BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780516|ref|YP_003064929.1| type II modification
methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780516|ref|YP_003064929.1| type II modification methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040193|gb|ACT56989.1| type II modification methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 83

 Score =  174 bits (440), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK
Sbjct: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          TQDIPDHDVLLAGFPCQPFSQAG
Sbjct: 61 TQDIPDHDVLLAGFPCQPFSQAG 83


>gi|319407456|emb|CBI81106.1| Cytosine-specific methyltransferase NlaX [Bartonella sp. 1-1C]
          Length = 307

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M +I DLF GIGGIRL  E  F   N +C F+SEI+ YS++TY+ NF N  + GDI +I 
Sbjct: 1  MYRIIDLFAGIGGIRLGFESAFGLNNTQCIFTSEIDKYSIQTYKLNFNNDYVHGDITQIH 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++IP HD+LLAGFPCQPFSQAG
Sbjct: 61 EEEIPKHDILLAGFPCQPFSQAG 83


>gi|261400948|ref|ZP_05987073.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209191|gb|EEZ75646.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 313

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+  +V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFD--DVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 59 VADIPDHDILLAGFPCQPFSQAG 81


>gi|313667524|ref|YP_004047808.1| cytosine-specific methyltransferase [Neisseria lactamica ST-640]
 gi|309378245|emb|CBX23130.1| DNA cytosine methyltransferase M.NlaX [Neisseria lactamica
          Y92-1009]
 gi|313004986|emb|CBN86414.1| cytosine-specific methyltransferase [Neisseria lactamica 020-06]
          Length = 313

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+   V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFD--GVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 59 VADIPDHDILLAGFPCQPFSQAG 81


>gi|150026187|ref|YP_001297013.1| type II modification methyltransferase [Flavobacterium
          psychrophilum JIP02/86]
 gi|149772728|emb|CAL44211.1| Probable type II modification methyltransferase [Flavobacterium
          psychrophilum JIP02/86]
          Length = 335

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGGIRL  E   +  N+EC F+SE N YS +TY AN+PN ++ GDI +I  
Sbjct: 7  IKIIDLFAGIGGIRLGFELA-SKNNIECVFTSEWNKYSEQTYLANYPNEIVHGDITQISE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+LLAGFPCQPFSQAG
Sbjct: 66 TQIPEHDILLAGFPCQPFSQAG 87


>gi|127471|sp|P24581|MTNX_NEILA RecName: Full=Cytosine-specific methyltransferase NlaX;
          Short=M.NlaX
 gi|45004|emb|CAA38357.1| cytosine-specific methyltransferase of NlaIII [Neisseria
          lactamica]
          Length = 313

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+  +V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFD--DVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+L AGFPCQPFSQAG
Sbjct: 59 VADIPDHDILSAGFPCQPFSQAG 81


>gi|317501747|ref|ZP_07959934.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896869|gb|EFV18953.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 499

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           ++  DLF G+GGIRL  E+      +E  C FSSEI  Y++K YQ  F N  ++GDI +I
Sbjct: 67  IRFIDLFAGLGGIRLGFEEGLREVGLEAKCVFSSEIKKYAIKAYQGYFGNEKVYGDITQI 126

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +T  IPD D LLAGFPCQPFS AG
Sbjct: 127 ETDTIPDFDFLLAGFPCQPFSSAG 150


>gi|315498495|ref|YP_004087299.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB
           48]
 gi|315416507|gb|ADU13148.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB
           48]
          Length = 410

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 55/79 (69%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
           DLF GIGG+R   ++   H    C F+SE N Y+ +TY ANF  N  I GDI +I+T DI
Sbjct: 70  DLFAGIGGLRRGFDEIGGH----CVFTSEWNKYAQQTYAANFRDNHPIHGDITQIETADI 125

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           PDHDVLLAGFPCQPFS AG
Sbjct: 126 PDHDVLLAGFPCQPFSIAG 144


>gi|269123998|ref|YP_003306575.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268315324|gb|ACZ01698.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 438

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           +K  DLF G+GGIR+  EQ FN   +  EC FSSEI  +++ +Y   F +  I GDI +I
Sbjct: 17  IKFIDLFAGLGGIRIGFEQAFNTLGISTECVFSSEIKKHAILSYTKYFGDYKIHGDIKEI 76

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              DIPD D LLAGFPCQPFS AG
Sbjct: 77  SVDDIPDFDFLLAGFPCQPFSSAG 100


>gi|462657|sp|P34877|MTSA_LACLC RecName: Full=Modification methylase ScrFIA; Short=M.ScrFI-A;
           Short=M.ScrFIA; AltName: Full=Cytosine-specific
           methyltransferase ScrFIA
 gi|149493|gb|AAA25220.1| SCRFI methylase [Lactococcus lactis]
 gi|2327034|gb|AAB66696.1| 5-methyl-cytosine methyltransferase [Lactococcus lactis subsp.
           cremoris]
          Length = 389

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLF GIGG RL   QT     V+  FSSEI+ +++KTY+ANF +    GDI KI  +
Sbjct: 80  KMIDLFAGIGGTRLGFHQT---EKVKSVFSSEIDKFAIKTYKANFGDE-PHGDITKIDEK 135

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+L+ GFPCQ FSQAG
Sbjct: 136 DIPDHDILVGGFPCQAFSQAG 156


>gi|321310755|ref|YP_004193084.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802599|emb|CBY93245.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 362

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLF GIGG RL   +T     V   FSSEI+ +S+KTY+ANF  T   GDI KI ++
Sbjct: 56  KMIDLFAGIGGTRLGFYKT---GKVNVVFSSEIDKFSIKTYKANFGET-PSGDITKIGSE 111

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+L+ GFPCQ FSQAG
Sbjct: 112 DIPDHDILVGGFPCQSFSQAG 132


>gi|54297036|ref|YP_123405.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
 gi|53750821|emb|CAH12229.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
          Length = 320

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 55/82 (67%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIR+     F+  N EC FSSEI+PY  KTY+ANF     FGDI KI  
Sbjct: 6  FKFIDLFAGIGGIRI----PFDKLNGECVFSSEIDPYCQKTYEANFGEKP-FGDITKISP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          QD+PDHD+LL GFPCQ FS  G
Sbjct: 61 QDVPDHDILLGGFPCQAFSIIG 82


>gi|224543136|ref|ZP_03683675.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523923|gb|EEF93028.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
          15897]
          Length = 430

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR   E   + R V  EC F+SEI PY++K  + N PN  I GDI ++
Sbjct: 5  IKFVDLFAGIGGIRKGFELACSDRGVKTECVFTSEIKPYAIKVLKQNHPNETITGDITQV 64

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              IPD D LL GFPCQ FS AG
Sbjct: 65 DATKIPDFDFLLGGFPCQAFSAAG 88


>gi|17863973|gb|AAL46998.1|AF448250_2 putative C-5 cytosine-specific DNA methylase [Bacteroides coprosuis
           DSM 18011]
          Length = 401

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 56/82 (68%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIRL     F     EC FSSEI+ ++ KTY +N+ +    GDI KIK 
Sbjct: 74  FKFIDLFAGIGGIRL----PFQLNGGECVFSSEIDYHAQKTYYSNYGD-YPSGDITKIKA 128

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDHD+LLAGFPCQ FSQAG
Sbjct: 129 EDIPDHDILLAGFPCQAFSQAG 150


>gi|325130383|gb|EGC53149.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          OX99.30304]
          Length = 425

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|161870123|ref|YP_001599293.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          053442]
 gi|225075874|ref|ZP_03719073.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
          NRL30031/H210]
 gi|296313674|ref|ZP_06863615.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
          43768]
 gi|161595676|gb|ABX73336.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          053442]
 gi|224952820|gb|EEG34029.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
          NRL30031/H210]
 gi|296839734|gb|EFH23672.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
          43768]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|15676920|ref|NP_274067.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|7226272|gb|AAF41432.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|325136241|gb|EGC58849.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325202033|gb|ADY97487.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          M01-240149]
 gi|325208214|gb|ADZ03666.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          NZ-05/33]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|304387455|ref|ZP_07369646.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|304338548|gb|EFM04667.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
          Length = 273

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|240128365|ref|ZP_04741026.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae SK-93-1035]
 gi|268686763|ref|ZP_06153625.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627047|gb|EEZ59447.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|59801103|ref|YP_207815.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA 1090]
 gi|121634967|ref|YP_975212.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|194098793|ref|YP_002001855.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae NCCP11945]
 gi|239999085|ref|ZP_04719009.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae 35/02]
 gi|240014008|ref|ZP_04720921.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae DGI18]
 gi|240016449|ref|ZP_04722989.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA6140]
 gi|240080568|ref|ZP_04725111.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA19]
 gi|240113063|ref|ZP_04727553.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae MS11]
 gi|240115818|ref|ZP_04729880.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID18]
 gi|240118116|ref|ZP_04732178.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID1]
 gi|240121574|ref|ZP_04734536.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID24-1]
 gi|240123666|ref|ZP_04736622.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID332]
 gi|240125856|ref|ZP_04738742.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae SK-92-679]
 gi|254493863|ref|ZP_05107034.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440365|ref|ZP_05794181.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae DGI2]
 gi|268594923|ref|ZP_06129090.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268596698|ref|ZP_06130865.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268599147|ref|ZP_06133314.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268601493|ref|ZP_06135660.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268603831|ref|ZP_06137998.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268682295|ref|ZP_06149157.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268684453|ref|ZP_06151315.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043662|ref|ZP_06569378.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|293398965|ref|ZP_06643130.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717998|gb|AAW89403.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA 1090]
 gi|120866673|emb|CAM10425.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|193934083|gb|ACF29907.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae NCCP11945]
 gi|226512903|gb|EEH62248.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548312|gb|EEZ43730.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268550486|gb|EEZ45505.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268583278|gb|EEZ47954.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268585624|gb|EEZ50300.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268587962|gb|EEZ52638.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268622579|gb|EEZ54979.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268624737|gb|EEZ57137.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012125|gb|EFE04114.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|291610379|gb|EFF39489.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164377|gb|ADV07918.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|254673505|emb|CBA08927.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
          alpha275]
          Length = 273

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|218768275|ref|YP_002342787.1| DNA modification methylase [Neisseria meningitidis Z2491]
 gi|121052283|emb|CAM08611.1| DNA modification methylase [Neisseria meningitidis Z2491]
          Length = 423

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|293363234|ref|ZP_06610118.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris
          A21JP2]
 gi|292553093|gb|EFF41842.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris
          A21JP2]
          Length = 428

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+GGIR+  EQ    + +  EC F+SEI  +++K Y+ NF ++ I GDI+KI
Sbjct: 13 IKFIDLFAGLGGIRIGFEQALKDKKIKSECVFTSEIKKHAIKAYKNNFKDSNINGDISKI 72

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + IP  D LLAGFPCQPFS AG
Sbjct: 73 DLEKIPYFDYLLAGFPCQPFSSAG 96


>gi|12229863|sp|Q59605|MTB5_NEIGO RecName: Full=Modification methylase NgoBV; Short=M.NgoBV;
          AltName: Full=Cytosine-specific methyltransferase
          NgoBV; Short=M.NgoV
 gi|1165242|gb|AAA86268.1| M.NgoV DNA methylase [Neisseria gonorrhoeae]
          Length = 423

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|189423370|ref|YP_001950547.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419629|gb|ACD94027.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 415

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/84 (57%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
           M    DLF GIGGIRL     F      C F+SE N +S KTY  NF N   I GDI   
Sbjct: 67  MFTFIDLFAGIGGIRLG----FQSAGGRCVFTSEWNDWSQKTYVENFGNEHAIVGDIVPY 122

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDHDVLLAGFPCQPFS AG
Sbjct: 123 PAEDIPDHDVLLAGFPCQPFSIAG 146


>gi|172036128|ref|YP_001802629.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171697582|gb|ACB50563.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 349

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 5/83 (6%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++K  DLF GIGG+RL   + F     +C FSSE + Y+ KTY+ANF     FGDI +I 
Sbjct: 38  IIKFVDLFAGIGGMRLGFSRPF----TQCVFSSEWDKYAQKTYEANFQEKP-FGDINEIH 92

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            QDIPDHD+L+ GFPCQPFS  G
Sbjct: 93  LQDIPDHDILIGGFPCQPFSTIG 115


>gi|217980150|ref|YP_002364200.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
 gi|217508321|gb|ACK55106.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
          Length = 419

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 52/79 (65%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
           DLF G+GGIR+  E         C F+SE + Y+ KTY  NFP    + GDI KI+  DI
Sbjct: 70  DLFAGVGGIRMGFEA----HGGRCVFTSEWDSYAQKTYAENFPAEHPLNGDITKIEAADI 125

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           PDHDVLLAGFPCQPFS AG
Sbjct: 126 PDHDVLLAGFPCQPFSIAG 144


>gi|153955289|ref|YP_001396054.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348147|gb|EDK34683.1| Predicted DNA methylase [Clostridium kluyveri DSM 555]
          Length = 416

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E  +     +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFEDKY----TKCVFSSEWDKYAAQTYEANYGEK-PHGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 156 NDIPDHDVLLAGFPCQPFSNIG 177


>gi|219855710|ref|YP_002472832.1| hypothetical protein CKR_2367 [Clostridium kluyveri NBRC 12016]
 gi|219569434|dbj|BAH07418.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 419

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E  +     +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 104 LTFIDLFAGIGGIRLGFEDKY----TKCVFSSEWDKYAAQTYEANYGEK-PHGDITKINE 158

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 159 NDIPDHDVLLAGFPCQPFSNIG 180


>gi|220930232|ref|YP_002507141.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000560|gb|ACL77161.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 416

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E  +     +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFEDKY----TKCVFSSEWDKYAAQTYEANYGEK-PHGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 156 NDIPDHDVLLAGFPCQPFSNIG 177


>gi|261400634|ref|ZP_05986759.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
          23970]
 gi|313668389|ref|YP_004048673.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|1709164|sp|P50182|MTN4_NEILA RecName: Full=Modification methylase NlaIV; Short=M.NlaIV;
          AltName: Full=Cytosine-specific methyltransferase NlaIV
 gi|476227|gb|AAA53237.1| M.NlaIV [Neisseria lactamica]
 gi|269209540|gb|EEZ75995.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
          23970]
 gi|313005851|emb|CBN87307.1| DNA modification methylase [Neisseria lactamica 020-06]
          Length = 423

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  +C F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACKCVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|328948822|ref|YP_004366159.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328449146|gb|AEB14862.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 437

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR   E       +  EC F+SEI P++V+  + N PN  + GDI KI
Sbjct: 7  IKFIDLFAGIGGIRKGFESACADLGIKTECVFTSEIKPHAVEVLKQNHPNETVRGDITKI 66

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T +IPD D LL GFPCQ FS AG
Sbjct: 67 ETAEIPDFDFLLGGFPCQAFSAAG 90


>gi|260554958|ref|ZP_05827179.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
 gi|260411500|gb|EEX04797.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
          Length = 413

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/78 (57%), Positives = 53/78 (67%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGGIRL  +Q       +C FSSE + ++ KTY ANF   L  GDI +I+  DIP
Sbjct: 63  DLFAGIGGIRLPFQQL----KGKCVFSSEWDKFAQKTYAANF-GELPSGDITQIRAADIP 117

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+LL GFPCQ FSQAG
Sbjct: 118 DHDILLGGFPCQAFSQAG 135


>gi|323650698|gb|ADX97433.1| M1.BspACI [Bacillus psychrodurans]
          Length = 320

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 11/85 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
           K  DLF GIGG R+ LE+       +C FSS+I+ Y+ +TY+ NF   P+    GDI K
Sbjct: 4  FKFIDLFSGIGGFRIALEENGG----QCVFSSDIDKYARETYKENFGEEPS----GDITK 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK+++IPDHD+L AGFPCQPFS AG
Sbjct: 56 IKSEEIPDHDILCAGFPCQPFSIAG 80


>gi|154149305|ref|YP_001405677.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          hominis ATCC BAA-381]
 gi|153805314|gb|ABS52321.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          hominis ATCC BAA-381]
          Length = 88

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M K  DLF GIGGIRL  +Q F   +++  F SE++  +V+TY+ANF +++ + GDI K+
Sbjct: 1  MYKSIDLFAGIGGIRLGFDQAFGD-DIKTVFISELDEKAVETYKANFNDSIDVVGDITKV 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + IP+HD+LLAGFPCQ FS AG
Sbjct: 60 DEKKIPEHDILLAGFPCQAFSLAG 83


>gi|119026301|ref|YP_910146.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765885|dbj|BAF40064.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 383

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/78 (57%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG RL  ++T     V+  FSSEIN +S KTY ANF      GDI +I   DIP
Sbjct: 77  DLFAGIGGTRLGFQET---GRVKVVFSSEINKFSAKTYHANF-GEYPAGDITQIAASDIP 132

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+L+ GFPCQ FSQAG
Sbjct: 133 DHDILVGGFPCQAFSQAG 150


>gi|127427|sp|P17044|MTBF_BACSU RecName: Full=Modification methylase BsuFI; Short=M.BsuFI; AltName:
           Full=Cytosine-specific methyltransferase BsuFI
 gi|39984|emb|CAA35888.1| unnamed protein product [Bacillus subtilis]
          Length = 409

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E  +     +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFEDKYT----KCVFSSEWDKYAAQTYEANYGEK-PHGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPD DVLLAGFPCQPFS  G
Sbjct: 156 NDIPDQDVLLAGFPCQPFSNIG 177


>gi|328947602|ref|YP_004364939.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447926|gb|AEB13642.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 431

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 54/79 (68%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           DLF GIGGIR   EQ       +C F+SE + ++ KTY  N+P+   I GDI K+  +DI
Sbjct: 79  DLFAGIGGIRKGFEQAGG----KCVFTSEWDEFAQKTYSNNYPSKCPINGDITKVNAEDI 134

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           PDHDVLLAGFPCQPFS AG
Sbjct: 135 PDHDVLLAGFPCQPFSIAG 153


>gi|332188292|ref|ZP_08390019.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
 gi|332011688|gb|EGI53766.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
          Length = 423

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 50/79 (63%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
           DLF GIGGIRL  E         C F+SE + Y+ KTY  NF     I GDI K+   DI
Sbjct: 75  DLFAGIGGIRLGFEAAGG----RCVFTSEWDKYAQKTYIENFGEEHEIAGDITKVDADDI 130

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           PDHDVLLAGFPCQPFS AG
Sbjct: 131 PDHDVLLAGFPCQPFSLAG 149


>gi|283471715|emb|CAQ50926.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 397

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLF GIGG RL  +    H NV+C FSSE + +S KTY+ANF  T   GDI +I   
Sbjct: 87  KMIDLFAGIGGTRLGFQL---HGNVKCVFSSEWDKFSAKTYKANFGETPK-GDITQIIAD 142

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           +IP HD+L+AGFPCQ FSQAG
Sbjct: 143 EIPTHDILVAGFPCQAFSQAG 163


>gi|325913633|ref|ZP_08175995.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325476992|gb|EGC80142.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 372

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLF GIGGIRL  E   + +N EC +SSE + Y+ KTYQANF   +  GDI K+  
Sbjct: 56  IKFIDLFAGIGGIRLGFEG--DSKNTECVYSSEWDKYAQKTYQANF-GVMPDGDITKVSA 112

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP+ +VLLAGFPCQPFS  G
Sbjct: 113 SSIPNFNVLLAGFPCQPFSSIG 134


>gi|254429380|ref|ZP_05043087.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
 gi|196195549|gb|EDX90508.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
          Length = 435

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
            K  DLF GIGG+R+     F     +C F+SE + Y+ +TY  NF ++  + GDI ++ 
Sbjct: 86  FKFVDLFAGIGGLRM----AFESAGGQCVFTSEWDSYAQRTYLGNFGDSHQLNGDITEVN 141

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPDHDVLLAGFPCQPFS AG
Sbjct: 142 AADIPDHDVLLAGFPCQPFSIAG 164


>gi|239621327|ref|ZP_04664358.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515788|gb|EEQ55655.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 343

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 24  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 82

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             D+PD D+LLAGFPCQPFS AG
Sbjct: 83  EHDVPDIDLLLAGFPCQPFSIAG 105


>gi|189439219|ref|YP_001954300.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|189427654|gb|ACD97802.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 323

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 4  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D+LLAGFPCQPFS AG
Sbjct: 63 EHDVPDIDLLLAGFPCQPFSIAG 85


>gi|148244085|ref|YP_001220322.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400648|gb|ABQ29180.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
          Length = 487

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 53/80 (66%), Gaps = 6/80 (7%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           DLF GIGG+R    + F      C F+SE + YS  TY AN+P  +  I GDI KI  +D
Sbjct: 136 DLFAGIGGLR----RGFEAIGGRCVFTSEWDKYSQATYAANYPYDDHTISGDITKIGEKD 191

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           IP+HDVLLAGFPCQPFS AG
Sbjct: 192 IPEHDVLLAGFPCQPFSIAG 211


>gi|23466029|ref|NP_696632.1| modification methylase very EcoRII
          (cytosine-specificmethyltransferase [Bifidobacterium
          longum NCC2705]
 gi|23326750|gb|AAN25268.1| modification methylase very similar to EcoRII
          (cytosine-specificmethyltransferase [Bifidobacterium
          longum NCC2705]
          Length = 323

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 4  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D+LLAGFPCQPFS AG
Sbjct: 63 EHDVPDIDLLLAGFPCQPFSIAG 85


>gi|294788070|ref|ZP_06753314.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
 gi|294484363|gb|EFG32046.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK  DLF G+GGIR   +Q F  R +E  FSSEI+ ++ +TY AN+ + + +GDI +I+ 
Sbjct: 41  LKAIDLFAGVGGIRTGFQQAFGER-IEFVFSSEIDKFARQTYAANY-HEIPYGDITQIQA 98

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            ++P HD++LAGFPCQ FS AG
Sbjct: 99  HEVPTHDIILAGFPCQAFSVAG 120


>gi|254251049|ref|ZP_04944367.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124893658|gb|EAY67538.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 530

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 50/79 (63%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           DLF GIGGIR+     F      C F+SE + Y+ KTY  NFP+ + I GDI  +    I
Sbjct: 176 DLFAGIGGIRM----AFELNGGRCVFTSEWDSYAQKTYHVNFPDGMPIHGDITDVDETSI 231

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P HDVLLAGFPCQPFS AG
Sbjct: 232 PSHDVLLAGFPCQPFSIAG 250


>gi|187923141|ref|YP_001894783.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714335|gb|ACD15559.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 426

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK 58
            +  DLF GIGGIR+  E        +C F+SE N +S KTY+ N+P      + GDI  
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGDCVFTSEWNDFSTKTYRENYPGGGEHALIGDIVS 126

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +D+P HDVLL GFPCQPFS AG
Sbjct: 127 FPAEDVPSHDVLLGGFPCQPFSIAG 151


>gi|167751356|ref|ZP_02423483.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
 gi|167655602|gb|EDR99731.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
          Length = 475

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
           + +  DLF GIGGIRL  E+ F ++ +E  F SE + Y+ KTY+ANF +   I GDI KI
Sbjct: 140 VFRSIDLFAGIGGIRLGFERAFKNQ-IETVFVSEWDEYAQKTYRANFEDDFEIAGDITKI 198

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              D+P+ D+ LAGFPCQ FS AG
Sbjct: 199 DESDVPEFDICLAGFPCQAFSLAG 222


>gi|312898460|ref|ZP_07757850.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
 gi|310620379|gb|EFQ03949.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
          Length = 400

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 53/81 (65%), Gaps = 11/81 (13%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
           DLF GIGG+RL  EQ   H    C +S+E N YS +TY ANF   P+    GDI K+   
Sbjct: 57  DLFAGIGGMRLAYEQAGGH----CVYSNEWNKYSQQTYFANFGEQPD----GDITKVDEN 108

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L+AGFPCQPFS AG
Sbjct: 109 SIPDHDILVAGFPCQPFSIAG 129


>gi|300813374|ref|ZP_07093725.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836
          str. F0141]
 gi|300512517|gb|EFK39666.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836
          str. F0141]
          Length = 347

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M K  DLF GIGGIRL  +Q F + ++E  F SE +  + +TY ANF     IFGDI KI
Sbjct: 1  MFKSIDLFAGIGGIRLGFDQAFGN-DIETVFVSEWDKKAQETYIANFGEKPKIFGDITKI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP HD+LLAGFPCQ FS AG
Sbjct: 60 DEIDIPIHDILLAGFPCQAFSLAG 83


>gi|319893523|ref|YP_004150398.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163219|gb|ADV06762.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLF GIGG RL  +    + NV+  FSSE + +S KTY+ANF   +  GDI +IK  
Sbjct: 87  KMIDLFAGIGGTRLGFQL---NGNVKSVFSSEWDKFSQKTYKANF-GEIPAGDITEIKEG 142

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           DIP+HD+L+ GFPCQ FSQAG
Sbjct: 143 DIPNHDILVGGFPCQAFSQAG 163


>gi|298373723|ref|ZP_06983712.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298274775|gb|EFI16327.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 457

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          LK  DLF G+GG  L L++       +C F+SEI     K Y+ NFP T +I GDI KIK
Sbjct: 12 LKFIDLFAGLGGFHLALKEL----GCKCVFASEIKDDLRKLYKINFPETPIIEGDITKIK 67

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +++IP HD+L AGFPCQPFSQAG
Sbjct: 68 SEEIPSHDILCAGFPCQPFSQAG 90


>gi|255262721|ref|ZP_05342063.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
 gi|255105056|gb|EET47730.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
          Length = 421

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGGIR+  ++   H    C FSSE + +S K+Y AN+   +  GDI +I  
Sbjct: 80  FRFIDLFAGIGGIRMPFQELGGH----CVFSSEWDKFSQKSYAANY-GEVPQGDITQIAA 134

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIP+HD+LLAGFPCQ FSQAG
Sbjct: 135 NDIPEHDLLLAGFPCQAFSQAG 156


>gi|294661528|ref|YP_003579981.1| hypothetical protein KP-KP15_gp115 [Klebsiella phage KP15]
 gi|292660689|gb|ADE34937.1| hypothetical protein [Klebsiella phage KP15]
          Length = 308

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DL  G+GG+RL  ++ F    VEC  +SEI+ ++ +TY  N+ +  I GDI  I  
Sbjct: 1  MKIIDLCAGVGGVRLGFDKAFG--GVECLLTSEIDKHAQQTYADNWGDENIQGDIFTIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NDVPDHDILLAGFPCQAFSKAG 80


>gi|290969050|ref|ZP_06560585.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
          str. 28L]
 gi|290781006|gb|EFD93599.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
          str. 28L]
          Length = 333

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M +  DLF GIGGIRL  EQ F    +   F+SE N  S +TY ANF   + IFGDI  I
Sbjct: 1  MYRAIDLFAGIGGIRLGFEQAFGA-EMTTVFTSEWNKKSQETYLANFGEEIHIFGDITAI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IP HD+LLAGFPCQ FS AG
Sbjct: 60 DERNIPPHDILLAGFPCQAFSLAG 83


>gi|238898088|ref|YP_002923769.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465848|gb|ACQ67622.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 401

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
            +  DLF GIGGIR+     F+ +  EC F+SE N +S KTY  N+  P+  + GDI   
Sbjct: 49  FRFIDLFAGIGGIRMG----FDAQGGECVFTSEWNRFSKKTYIQNYGAPHPFV-GDIVPY 103

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +D+PDHDVLLAGFPCQPFS AG
Sbjct: 104 PAEDVPDHDVLLAGFPCQPFSIAG 127


>gi|126658057|ref|ZP_01729209.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
 gi|126620695|gb|EAZ91412.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
          Length = 358

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG+R+   ++++    +C FSSE + Y+ +TYQ NF     FGDI KI  QDIP
Sbjct: 44  DLFAGIGGMRMGFSRSYS----QCVFSSEWDKYAQQTYQFNFGEKP-FGDINKINPQDIP 98

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+L+ GFPCQPFS  G
Sbjct: 99  DHDILIGGFPCQPFSTIG 116


>gi|323486195|ref|ZP_08091524.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|323400521|gb|EGA92890.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 382

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 11/85 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGG+R+  E+       +C +SSE N YS +TY ANF   P     GDI +
Sbjct: 55  FRFIDLFAGIGGMRIAYERAGG----KCVYSSEWNKYSQQTYFANFGEQPE----GDITQ 106

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++ +DIPDHD+L+AGFPCQPFS AG
Sbjct: 107 VEAEDIPDHDILVAGFPCQPFSIAG 131


>gi|308229518|gb|ADO24171.1| M.AciI [Arthrobacter citreus]
          Length = 703

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+  LF GIGG  L L+  ++  +    FSSEI+ ++ ++Y ANFPN  + GDI KI  Q
Sbjct: 23  KVVSLFSGIGGFELGLK--YSSLSSHVIFSSEIDKFAQQSYLANFPNHNLVGDITKIDEQ 80

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           +IPDHD+L+ GFPCQ FS AG
Sbjct: 81  EIPDHDILMGGFPCQAFSIAG 101



 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG RL LE+        C FSS+I+ Y+ +TY  NF   +  GDI KI +++IP
Sbjct: 389 DLFSGIGGFRLALEKN----GGTCLFSSDIDKYARETYFNNF-GEMPSGDITKIASENIP 443

Query: 66  DHDVLLAGFPCQPFSQAG 83
            HD+L AGFPCQPFS AG
Sbjct: 444 FHDILCAGFPCQPFSIAG 461


>gi|325973250|ref|YP_004250314.1| cytosine-specific DNA modification methylase, HpaII-like protein
          [Mycoplasma suis str. Illinois]
 gi|323651852|gb|ADX97934.1| cytosine-specific DNA modification methylase, HpaII-like protein
          [Mycoplasma suis str. Illinois]
          Length = 326

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLF GIGG RL    T     V+  FSSEI+ ++ KTY++NF +  + GDI +I ++
Sbjct: 20 RMIDLFAGIGGTRLGFHLT---GEVKVVFSSEIDKFAKKTYKSNFSDEPL-GDIREINSE 75

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD+L+AGFPCQ FSQAG
Sbjct: 76 DIPNHDILVAGFPCQAFSQAG 96


>gi|296126560|ref|YP_003633812.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018376|gb|ADG71613.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 311

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M +  DLF G+GG  L     FN  N  C F+SEI+  + +TY+ NFP+T++ GDI +I 
Sbjct: 1  MYRFIDLFAGVGGFHL----AFNSEN--CVFASEIDINARETYKLNFPDTVLEGDITEID 54

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++IP+HD+L AGFPCQPFS AG
Sbjct: 55 EKNIPEHDILCAGFPCQPFSVAG 77


>gi|291530358|emb|CBK95943.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 696

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          K  DLF GIGGIRL  EQ F + ++   F SE + Y+ +TY+ANF +   I GDI +I  
Sbjct: 5  KSIDLFAGIGGIRLGFEQAFGN-SINTVFVSEWDKYAQETYKANFRDKFDIAGDITQIDE 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPD D+ LAGFPCQ FS AG
Sbjct: 64 RDIPDFDICLAGFPCQAFSLAG 85


>gi|163732386|ref|ZP_02139832.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
 gi|161394684|gb|EDQ19007.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
          Length = 410

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
           DLF GIGG+R  +E         C F+SE + ++ +TY ANFP N  I GDI +I  +++
Sbjct: 67  DLFAGIGGLRKAMESAGG----RCVFTSEWDRFAQQTYDANFPDNRPIAGDITEIDAEEL 122

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P+HDVL+AGFPCQPFS AG
Sbjct: 123 PEHDVLVAGFPCQPFSIAG 141


>gi|149926993|ref|ZP_01915251.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
 gi|149824214|gb|EDM83434.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
          Length = 435

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 6/80 (7%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           DLF G+GGIR    + F ++  +C F+SE + Y+ KTY+ N+   +  I GDI K+ T D
Sbjct: 89  DLFAGVGGIR----RAFENQGGKCVFTSEWDSYAQKTYRENYQRDHHEISGDITKVNTVD 144

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           IP+HDVLLAGFPCQPFS AG
Sbjct: 145 IPNHDVLLAGFPCQPFSIAG 164


>gi|170729237|ref|YP_001763263.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169814584|gb|ACA89168.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 416

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF GIGG+RL  +Q     +  C FSSE + ++  TYQ N    L FGDI  I   
Sbjct: 97  KFIDLFAGIGGVRLGFQQN----DGACVFSSEFDKHAQATYQTNH-GELPFGDITAINPT 151

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            IPDHDVLLAGFPCQPFS AG
Sbjct: 152 HIPDHDVLLAGFPCQPFSHAG 172


>gi|194099739|ref|YP_002002874.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|240013125|ref|ZP_04720038.1| NgoIM [Neisseria gonorrhoeae DGI18]
 gi|240015568|ref|ZP_04722108.1| NgoIM [Neisseria gonorrhoeae FA6140]
 gi|240114103|ref|ZP_04728593.1| NgoIM [Neisseria gonorrhoeae MS11]
 gi|240114658|ref|ZP_04728720.1| NgoIM [Neisseria gonorrhoeae PID18]
 gi|240120196|ref|ZP_04733158.1| NgoIM [Neisseria gonorrhoeae PID24-1]
 gi|240122493|ref|ZP_04735449.1| NgoIM [Neisseria gonorrhoeae PID332]
 gi|240126658|ref|ZP_04739544.1| NgoIM [Neisseria gonorrhoeae SK-92-679]
 gi|254492718|ref|ZP_05105889.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|260441536|ref|ZP_05795352.1| NgoIM [Neisseria gonorrhoeae DGI2]
 gi|268600171|ref|ZP_06134338.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268600304|ref|ZP_06134471.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268602536|ref|ZP_06136703.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268681085|ref|ZP_06147947.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268685237|ref|ZP_06152099.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268685565|ref|ZP_06152427.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|193935029|gb|ACF30853.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|226511758|gb|EEH61103.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|268584302|gb|EEZ48978.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268584435|gb|EEZ49111.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268586667|gb|EEZ51343.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268621369|gb|EEZ53769.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268625521|gb|EEZ57921.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268625849|gb|EEZ58249.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|317165226|gb|ADV08767.1| NgoIM [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 315

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQVYEANFGEK-PFGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|296159065|ref|ZP_06841892.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
 gi|295890626|gb|EFG70417.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
          Length = 426

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAK 58
            +  DLF GIGGIR+  E        +C F+SE N +S KTY+ N+P      + GDI  
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGDCVFTSEWNDFSTKTYRENYPGDGEHALIGDIVS 126

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +++P HDVLL GFPCQPFS AG
Sbjct: 127 FPAEEVPGHDVLLGGFPCQPFSIAG 151


>gi|59802299|ref|YP_209011.1| NgoIM [Neisseria gonorrhoeae FA 1090]
 gi|240081825|ref|ZP_04726368.1| NgoIM [Neisseria gonorrhoeae FA19]
 gi|59719194|gb|AAW90599.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA 1090]
          Length = 315

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQVYEANFGEK-PFGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|268597921|ref|ZP_06132088.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
 gi|268551709|gb|EEZ46728.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
          Length = 320

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 6  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQVYEANFGEK-PFGDINGID 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 61 PSDIPDHDILLAGFPCQPFSIAG 83


>gi|268595734|ref|ZP_06129901.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291044897|ref|ZP_06570606.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397972|ref|ZP_06642178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|268549123|gb|EEZ44541.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291011791|gb|EFE03787.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611918|gb|EFF40987.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 320

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 6  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQVYEANFGEK-PFGDINGID 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 61 PSDIPDHDILLAGFPCQPFSIAG 83


>gi|78777762|ref|YP_394077.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans
          DSM 1251]
 gi|78498302|gb|ABB44842.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans
          DSM 1251]
          Length = 328

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGGIRL  EQ F  + +E  F+SEI+ Y+ +TY ANF  T   GDI +I  
Sbjct: 20 FRAIDLFAGIGGIRLGFEQAFGEK-IEFVFASEIDKYARETYYANFGET-PHGDITQIDE 77

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  D+LLAGFPCQ FS AG
Sbjct: 78 KNIPPFDILLAGFPCQAFSVAG 99


>gi|126464142|ref|YP_001045255.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105953|gb|ABN78483.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 417

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGG+R   +    H    C F+SE + ++ +TY+AN+   P  +  GDI K
Sbjct: 62  FRFIDLFAGIGGLRRGFDAVGGH----CVFTSEWDRFAQQTYRANYHDGPAHVFKGDITK 117

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++  +IP+HDVLLAGFPCQPFS AG
Sbjct: 118 VEMHEIPEHDVLLAGFPCQPFSIAG 142


>gi|12229862|sp|Q59603|MTB1_NEIGO RecName: Full=Modification methylase NgoBI; Short=M.NgoBI;
          AltName: Full=Cytosine-specific methyltransferase
          NgoBI; Short=M.NgoI
 gi|5924404|gb|AAB03206.2| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]
          Length = 317

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQVYEANFGEK-PFGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|254804105|ref|YP_003082326.1| putative type II DNA modification methyltransferase [Neisseria
          meningitidis alpha14]
 gi|254667647|emb|CBA03458.1| putative type II DNA modification methyltransferase [Neisseria
          meningitidis alpha14]
          Length = 315

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQMYEANFGEK-PFGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|296313699|ref|ZP_06863640.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
 gi|296839717|gb|EFH23655.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
          Length = 315

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+ +   NV   FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK-YGCTNV---FSSEWDKYARQMYEANFGEK-PFGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|124024750|ref|YP_001013866.1| site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
 gi|123959818|gb|ABM74601.1| Site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
          Length = 305

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGGIR+  E+       EC FSSE + YS  TY+ANF   +  GDI KI  
Sbjct: 5  FRFIDLFAGIGGIRIPFEEL----GGECVFSSEWDKYSQITYEANF-GEIPKGDITKINA 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP HD+L+ GFPCQ FSQAG
Sbjct: 60 EDIPKHDLLVGGFPCQAFSQAG 81


>gi|299536257|ref|ZP_07049570.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
 gi|298728243|gb|EFI68805.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
          Length = 403

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 11/83 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIK 60
           + DLF GIGGIRL     F  +   C F+SE + ++ KTY+ANF   PN    GDI KI 
Sbjct: 74  MIDLFAGIGGIRL----AFQSQGGYCCFTSEWDKFAAKTYRANFGDEPN----GDITKIN 125

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            ++IPDH++LLAGFPCQ FSQAG
Sbjct: 126 EKEIPDHNILLAGFPCQAFSQAG 148


>gi|325989685|ref|YP_004249384.1| cytosine-specific methyltransferase [Mycoplasma suis KI3806]
 gi|323574770|emb|CBZ40430.1| Cytosine-specific methyltransferase [Mycoplasma suis]
          Length = 326

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLF GIGG RL    T     V+  FSSEI+ ++ +TY++NF +  + GDI +I ++
Sbjct: 20 KMIDLFAGIGGTRLGFHLT---GEVKVVFSSEIDKFAKQTYKSNFSDEPL-GDIREINSE 75

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD+L+AGFPCQ FSQAG
Sbjct: 76 DIPNHDILVAGFPCQAFSQAG 96


>gi|54293106|ref|YP_125521.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
 gi|53752938|emb|CAH14374.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
          Length = 417

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 51/80 (63%), Gaps = 6/80 (7%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIKTQD 63
           DLF GIGGIRL  E        EC F+SE + YS  TY+ NF N    I GDI K+    
Sbjct: 71  DLFAGIGGIRLGFESIGG----ECIFTSEWDKYSQITYRKNFRNDHHPIIGDITKVDVNF 126

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           IP+HDVLLAGFPCQPFS AG
Sbjct: 127 IPEHDVLLAGFPCQPFSLAG 146


>gi|166368844|ref|YP_001661117.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
 gi|166091217|dbj|BAG05925.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
          Length = 338

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K  DLF GIGG R+     F +   +C FSSE N +S KTY+ANF N    GDI  I 
Sbjct: 1  MVKFIDLFAGIGGFRI----AFENLGCQCVFSSEWNKFSRKTYEANF-NDSPEGDITLIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L AGFPCQPFS AG
Sbjct: 56 ALTIPDHDILTAGFPCQPFSIAG 78


>gi|323650700|gb|ADX97434.1| M2.BspACI [Bacillus psychrodurans]
          Length = 444

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LKI  LF GIGG    LE++  + + +  FSSEI+ ++  +Y+ANFPN  + GDI KI  
Sbjct: 86  LKIVSLFSGIGGFEAGLEES--NVSGKIVFSSEIDRFAKISYEANFPNHNLHGDITKIDA 143

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +D+P+HD+L+ GFPCQ FS AG
Sbjct: 144 KDVPNHDLLIGGFPCQAFSIAG 165


>gi|313892290|ref|ZP_07825883.1| modification methylase HpaII [Dialister microaerophilus UPII
          345-E]
 gi|313119428|gb|EFR42627.1| modification methylase HpaII [Dialister microaerophilus UPII
          345-E]
          Length = 329

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M K  DLF GIGGIRL  EQ F +  ++  F SE +  + +TY+ANF + + I GDI  I
Sbjct: 1  MYKSIDLFAGIGGIRLGFEQAFKNE-IKTVFVSEWDKKAQETYRANFKDDIEIRGDINTI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +DIP H++LLAGFPCQ FS AG
Sbjct: 60 DEKDIPKHNILLAGFPCQAFSLAG 83


>gi|308126237|ref|ZP_05908633.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107574|gb|EFO45114.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 426

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGGIRL     F     +C F+SEI+ ++ +TY ANF      GDI KI   DIP
Sbjct: 89  DLFAGIGGIRL----PFQEVGGKCVFTSEIDKFAQQTYLANF-GEYPKGDITKISASDIP 143

Query: 66  DHDVLLAGFPCQPFSQAG 83
           +HDVLLAGFPCQ FSQAG
Sbjct: 144 NHDVLLAGFPCQAFSQAG 161


>gi|149184876|ref|ZP_01863193.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
 gi|148830987|gb|EDL49421.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
          Length = 410

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
           DLF GIGG+R    + F+     C F+SE + Y+  TY  N+P N  I GDI K+   +I
Sbjct: 68  DLFAGIGGLR----RAFDGIGGRCVFTSEWDKYAQLTYHTNYPDNRPIAGDITKVPVDEI 123

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P HDVLLAGFPCQPFS AG
Sbjct: 124 PVHDVLLAGFPCQPFSIAG 142


>gi|254671395|emb|CBA08869.1| hypothetical protein NME_1963 [Neisseria meningitidis alpha153]
 gi|316984659|gb|EFV63623.1| modification methylase NlaIV domain protein [Neisseria
          meningitidis H44/76]
          Length = 86

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF  + GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSEMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          +T DIPD D+LLAGFPCQ FS A
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFA 86


>gi|320331203|gb|EFW87160.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882725|gb|EGH16874.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 420

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +  DLF GIGGIR+  E        EC F+SE N +S KTY  N+ +   F GDI    
Sbjct: 69  FRFVDLFAGIGGIRMGFEA----HGGECVFTSEWNDFSKKTYIENYGDRHQFVGDIVPFP 124

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +D+P+HDVLL GFPCQPFS AG
Sbjct: 125 AEDVPNHDVLLGGFPCQPFSIAG 147


>gi|302347057|ref|YP_003815355.1| putative modification methylase HhaI [Prevotella melaninogenica
          ATCC 25845]
 gi|302150379|gb|ADK96640.1| putative modification methylase HhaI [Prevotella melaninogenica
          ATCC 25845]
          Length = 453

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG  L L +       +C FSSE+     K YQ N+P   I GDI KI  
Sbjct: 7  LQFIDLFAGLGGFHLALSKL----GCKCVFSSELKEDLRKLYQINYPGVRIEGDITKIAP 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP HD++ AGFPCQPFSQAG
Sbjct: 63 KDIPAHDIICAGFPCQPFSQAG 84


>gi|118576810|ref|YP_876553.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118195331|gb|ABK78249.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 325

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLFCGIGG+R+ LE+        C +S EIN  + KTY+ANF   +   DI ++  
Sbjct: 5  IRFIDLFCGIGGMRIGLERAGG----RCVYSCEINEPARKTYEANF-EPVTDKDITEVDA 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HDVL AGFPCQPFS AG
Sbjct: 60 GSIPNHDVLAAGFPCQPFSLAG 81


>gi|172038109|ref|YP_001804610.1| putative modification methylase [Cyanothece sp. ATCC 51142]
 gi|171699563|gb|ACB52544.1| putative modification methylase [Cyanothece sp. ATCC 51142]
          Length = 344

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 8/89 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQT-----FNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFG 54
           LK  DLFCGIGG R+ LE          + +E  C FSS+I+P + K Y+ANF      G
Sbjct: 16  LKYIDLFCGIGGFRIALESVCSQYRLKDKKIESICVFSSDIDPDAKKNYEANFKEKPQ-G 74

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI KI  + IP HD+LLAGFPCQPFS  G
Sbjct: 75  DITKIPIESIPKHDLLLAGFPCQPFSICG 103


>gi|157737722|ref|YP_001490405.1| DNA (cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|157699576|gb|ABV67736.1| DNA (Cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 326

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIR   E+ F   + E  F+SE++ Y+   Y  N+ N   +GDI KIK +
Sbjct: 21 KFIDLFAGIGGIRTGFEKVFKEES-EFVFASELDKYAQIAYFENY-NEKPYGDITKIKEE 78

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD++LAGFPCQ FS AG
Sbjct: 79 DIPNHDIILAGFPCQAFSIAG 99


>gi|327198092|ref|YP_004306459.1| gp47 [Burkholderia phage KL3]
 gi|310657226|gb|ADP02340.1| gp47 [Burkholderia phage KL3]
          Length = 422

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +  DLF GIGGIRL  E        EC F+SE N +S KTY  NF +   F GDI    
Sbjct: 70  FRFIDLFAGIGGIRLGFEA----HGGECVFTSEWNDFSKKTYVDNFGDHHPFIGDIVPFA 125

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            + +P HDVLLAGFPCQPFS AG
Sbjct: 126 AESVPTHDVLLAGFPCQPFSIAG 148


>gi|154484133|ref|ZP_02026581.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
          27560]
 gi|149735175|gb|EDM51061.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
          27560]
          Length = 366

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          +  DLF GIGGIR   +  F  +N++  F SE + Y+ KTY+AN+ +   I GDI KI  
Sbjct: 15 RAIDLFAGIGGIRKGFDNAFG-KNIDTVFVSEWDEYAQKTYRANYKDKFEIAGDITKIDE 73

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+ D+ LAGFPCQ FS AG
Sbjct: 74 KDIPEFDICLAGFPCQAFSLAG 95


>gi|127464|sp|P11408|MTM1_MORSP RecName: Full=Modification methylase MspI; Short=M.MspI; AltName:
           Full=Cytosine-specific methyltransferase MspI
 gi|44539|emb|CAA32393.1| unnamed protein product [Moraxella sp.]
          Length = 418

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF GIGGIR    Q+F     +C FSSEI+P++  TY  NF   + FGDI K++  
Sbjct: 106 KFIDLFSGIGGIR----QSFEVNGGKCVFSSEIDPFAKFTYYTNF-GVVPFGDITKVEAT 160

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            IP HD+L AGFPCQPFS  G
Sbjct: 161 TIPQHDILCAGFPCQPFSHIG 181


>gi|148826843|ref|YP_001291596.1| modification methylase HaeII [Haemophilus influenzae PittGG]
 gi|148718085|gb|ABQ99212.1| modification methylase HaeII [Haemophilus influenzae PittGG]
          Length = 318

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIRL  E  F  +NV   FSSE + Y+   Y+ NF     FGDI  I   
Sbjct: 5  KTIDLFAGIGGIRLGFE-AFGCKNV---FSSEWDKYAQSMYEVNFGEK-PFGDINDISPS 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPDHD+LLAGFPCQPFS AG
Sbjct: 60 DIPDHDILLAGFPCQPFSIAG 80


>gi|12229852|sp|O30868|MTH2_HAEAE RecName: Full=Modification methylase HaeII; Short=M.HaeII;
          AltName: Full=Cytosine-specific methyltransferase HaeII
 gi|2425087|gb|AAB70829.1| HaeII methylase [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIRL  E  F  +NV   FSSE + Y+   Y+ NF     FGDI  I   
Sbjct: 5  KTIDLFAGIGGIRLGFE-AFGCKNV---FSSEWDKYAQSMYEVNFGEK-PFGDINDISPS 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPDHD+LLAGFPCQPFS AG
Sbjct: 60 DIPDHDILLAGFPCQPFSIAG 80


>gi|68250112|ref|YP_249224.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
 gi|68058311|gb|AAX88564.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
          Length = 318

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIRL  E  F  +NV   FSSE + Y+   Y+ NF     FGDI  I   
Sbjct: 5  KTIDLFAGIGGIRLGFE-AFGCKNV---FSSEWDKYAQSMYEVNFGEK-PFGDINDISPS 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPDHD+LLAGFPCQPFS AG
Sbjct: 60 DIPDHDILLAGFPCQPFSIAG 80


>gi|319776347|ref|YP_004138835.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3047]
 gi|329123500|ref|ZP_08252064.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
 gi|317450938|emb|CBY87164.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3047]
 gi|327471082|gb|EGF16537.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIRL  E  F  +NV   FSSE + Y+   Y+ NF     FGDI  I   
Sbjct: 5  KTIDLFAGIGGIRLGFE-AFGCKNV---FSSEWDKYAQSMYEVNFGEK-PFGDINDISPS 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPDHD+LLAGFPCQPFS AG
Sbjct: 60 DIPDHDILLAGFPCQPFSIAG 80


>gi|145629544|ref|ZP_01785342.1| condesin subunit E [Haemophilus influenzae 22.1-21]
 gi|144978387|gb|EDJ88151.1| condesin subunit E [Haemophilus influenzae 22.1-21]
          Length = 95

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIRL  E  F  +NV   FSSE + Y+   Y+ NF     FGDI  I   
Sbjct: 5  KTIDLFAGIGGIRLGFE-AFGCKNV---FSSEWDKYAQSMYEVNFGEKP-FGDINDISPS 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPDHD+LLAGFPCQPFS AG
Sbjct: 60 DIPDHDILLAGFPCQPFSIAG 80


>gi|295675907|ref|YP_003604431.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
 gi|295435750|gb|ADG14920.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
          Length = 430

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------IFG 54
            +  DLF GIGGIR+  E        EC F+SE N +S +TY+ N+           + G
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGECVFTSEWNDFSTRTYRENYGGNAASGSAHALIG 126

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI     +D+P HDVLL GFPCQPFS AG
Sbjct: 127 DIVAFPAEDVPSHDVLLGGFPCQPFSIAG 155


>gi|210631776|ref|ZP_03297018.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
 gi|210159896|gb|EEA90867.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
          Length = 390

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGGIR+     F     EC FS E + ++ KTY+ N+  T   GDI ++   DIP
Sbjct: 77  DLFAGIGGIRM----PFQELGGECVFSCEWDKFAQKTYRMNYGETPA-GDIREVAASDIP 131

Query: 66  DHDVLLAGFPCQPFSQAG 83
           D DVLLAGFPCQPFS AG
Sbjct: 132 DFDVLLAGFPCQPFSLAG 149


>gi|288928693|ref|ZP_06422539.1| modification methylase NgoBI (Cytosine-specific methyltransferase
          NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329677|gb|EFC68262.1| modification methylase NgoBI (Cytosine-specific methyltransferase
          NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 309

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++  DLF GIGGIR+     F+    +C FSSE +  + KTY ANF + +  GDI KI 
Sbjct: 1  MVRYVDLFAGIGGIRI----PFDELGAQCVFSSEWDKAACKTYAANFGD-IPSGDITKIA 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP H +LLAGFPCQ FS  G
Sbjct: 56 AEDIPPHQLLLAGFPCQAFSIMG 78


>gi|255066464|ref|ZP_05318319.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298369378|ref|ZP_06980696.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|255049344|gb|EET44808.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298283381|gb|EFI24868.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 357

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGGIRL  E+       +C FSSEI+ ++  TYQA F   +  GDI +I  
Sbjct: 50  FRFIDLFAGIGGIRLPFEEL----GGQCVFSSEIDKFAKTTYQA-FYGDVPHGDITQIAP 104

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            +IPD D+LLAGFPCQPFSQAG
Sbjct: 105 SEIPDFDLLLAGFPCQPFSQAG 126


>gi|319644454|ref|ZP_07998887.1| hypothetical protein HMPREF9011_04490 [Bacteroides sp. 3_1_40A]
 gi|317384095|gb|EFV65072.1| hypothetical protein HMPREF9011_04490 [Bacteroides sp. 3_1_40A]
          Length = 139

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHR--NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR  LE   +      EC F+SEI  +++K  + N PN LI GDI ++
Sbjct: 5  IKFIDLFAGIGGIRCGLELAAHEAGYKTECVFTSEIKKHAIKVLKQNHPNELINGDITQV 64

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IPD D+  AGFPCQ FS  G
Sbjct: 65 NEKEIPDFDICCAGFPCQSFSGGG 88


>gi|262402975|ref|ZP_06079535.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
 gi|262350474|gb|EEY99607.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
          Length = 410

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGGIRL  ++   H    C F+SE + ++ KTY AN+   +  GDI +I  +DI 
Sbjct: 57  DLFAGIGGIRLPFQKLNGH----CVFTSEWDKFAQKTYLANY-GEMPSGDITQISAKDIK 111

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+LL GFPCQ FSQAG
Sbjct: 112 DHDILLGGFPCQAFSQAG 129


>gi|209520785|ref|ZP_03269531.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
 gi|209498782|gb|EDZ98891.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
          Length = 432

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL---------I 52
            +  DLF GIGGIR+  E        EC F+SE N +S +TY+ N+             +
Sbjct: 71  FRFIDLFAGIGGIRMGFET----HGGECVFTSEWNEFSTRTYRENYGENAGSGTDSAHAL 126

Query: 53  FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            GDI     +D+P HDVLL GFPCQPFS AG
Sbjct: 127 IGDIVAFPAEDVPSHDVLLGGFPCQPFSIAG 157


>gi|186476891|ref|YP_001858361.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
 gi|184193350|gb|ACC71315.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
          Length = 428

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 12/86 (13%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDIA 57
           DLF GIGGIR+  E        +C F+SE N +S KTY+ NF        P   + GDI 
Sbjct: 75  DLFAGIGGIRMGFEA----HGGQCVFTSEWNVFSQKTYRENFGEHCGDAAPQHTLIGDIV 130

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
               + +P+HD+LL GFPCQPFS AG
Sbjct: 131 TFPAEAVPEHDILLGGFPCQPFSIAG 156


>gi|66391578|ref|YP_239103.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
 gi|62288666|gb|AAX78649.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
          Length = 302

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  G+GG+R+  ++ F+   VEC  ++EI+ ++ +TY AN+    + GD+  I  
Sbjct: 1  MKLIDLCAGVGGVRMGFDRAFD--GVECVLTAEIDKFAQQTYAANWGGDNLEGDLFAIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NKVPDHDILLAGFPCQAFSKAG 80


>gi|166367724|ref|YP_001659997.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
 gi|166090097|dbj|BAG04805.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
          Length = 330

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLFCG+GG R+ +EQ    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFVDLFCGLGGFRVAIEQVCRQKNLESDCVFSCDIDKDARSIYHANFGDQPQ-GDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|119355933|ref|YP_910577.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
 gi|119353282|gb|ABL64153.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
          Length = 425

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
           DLF GIGG+R    + F      C F+SE + YS +TY ANF  +  I GDI KI  +DI
Sbjct: 71  DLFAGIGGMR----KAFEELGGRCVFTSEWDKYSRQTYCANFDCDHEIGGDITKIDARDI 126

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P HD+L+AGFPCQPFS AG
Sbjct: 127 PSHDILVAGFPCQPFSIAG 145


>gi|254445875|ref|ZP_05059351.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
 gi|198260183|gb|EDY84491.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
          Length = 321

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGG R+ LE+       EC FSSEI+ ++  TY+ NF +    GDI KI  
Sbjct: 7  FRFIDLFAGIGGFRIGLERLGG----ECVFSSEIDRHAAATYERNFGHKPA-GDITKIDA 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++PDH+V+  GFPCQPFS +G
Sbjct: 62 SEVPDHEVICGGFPCQPFSVSG 83


>gi|255591450|ref|XP_002535514.1| cytosine-specific methyltransferase, putative [Ricinus communis]
 gi|223522828|gb|EEF26867.1| cytosine-specific methyltransferase, putative [Ricinus communis]
          Length = 206

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 8/85 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAK 58
           +I DLF GIGGIR+  E        +C F+SE N +S KTYQ NF +      + GDI  
Sbjct: 29  RIIDLFAGIGGIRMGFEA----HGGQCVFTSEWNDFSQKTYQENFRDGTAQHALIGDIVT 84

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              + +P+HD+LL GFPCQPFS AG
Sbjct: 85  FPAEAVPEHDILLGGFPCQPFSIAG 109


>gi|1171044|sp|P43420|MTB6_BACSF RecName: Full=Modification methylase Bsp6I; Short=M.Bsp6I;
          AltName: Full=Cytosine-specific methyltransferase Bsp6I
 gi|547481|emb|CAA57293.1| site-specific DNA-methyltransferase (cytosine-specific) [Bacillus
          sp.]
 gi|1098125|prf||2115268B methyltransferase Bsp6IM
          Length = 315

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+I  LF G+GGI L  EQT      E  +++E +  +  TYQ+NF N LI  DI  IK
Sbjct: 1  MLQIASLFAGVGGIDLGFEQT---GYFETVWANEYDKNAAITYQSNFKNKLIIDDIRNIK 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D+PD DVLL+GFPC  FS AG
Sbjct: 58 VEDVPDFDVLLSGFPCTSFSVAG 80


>gi|227485931|ref|ZP_03916247.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227235976|gb|EEI85991.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 318

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+     F +   +C FSS+I+ Y+ +TY  NF      GDI K+ 
Sbjct: 1  MYKFIDLFCGIGGFRI----AFENLGCKCVFSSDIDVYARETYNDNF-GEYPAGDIIKVD 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + IP+HD+L AGFPCQPFS AG
Sbjct: 56 AETIPNHDILCAGFPCQPFSIAG 78


>gi|46191283|ref|ZP_00120453.2| COG0270: Site-specific DNA methylase [Bifidobacterium longum
          DJO10A]
          Length = 315

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 2/78 (2%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP 65
          +F GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+   D+P
Sbjct: 1  MFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDEHDVP 59

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D+LLAGFPCQPFS AG
Sbjct: 60 DIDLLLAGFPCQPFSIAG 77


>gi|315931535|gb|EFV10502.1| DNA (cytosine-5) methyltransferase [Campylobacter jejuni subsp.
          jejuni 327]
          Length = 284

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGGIR+  +  F  + +E  FSSEI+ ++ +TY  NF N L  GDI +I  
Sbjct: 8  LKAIDLFAGIGGIRIGFKNIFQEK-LEFVFSSEIDKFACQTYFCNF-NELPHGDITQINE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP H++LLAGFPCQ FS AG
Sbjct: 66 NNIPKHNILLAGFPCQAFSIAG 87


>gi|212716092|ref|ZP_03324220.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661459|gb|EEB22034.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
          Length = 453

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
            +  DLF GIGGIR        H      FSSE N +S +TY+ N+  T  + GDI K+ 
Sbjct: 84  FRTIDLFAGIGGIRRGFASAGGH----AVFSSEWNEFSARTYRTNYGFTEQMAGDITKVD 139

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPD DV+LAGFPCQPFS AG
Sbjct: 140 VDDIPDCDVVLAGFPCQPFSVAG 162


>gi|157414453|ref|YP_001481709.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|283955585|ref|ZP_06373079.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|157385417|gb|ABV51732.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|283792928|gb|EFC31703.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 321

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGGIR+  +  F  + +E  FSSEI+ ++ +TY  NF N L  GDI +I  
Sbjct: 8  LKAIDLFAGIGGIRIGFKNIFQEK-LEFVFSSEIDKFACQTYFCNF-NELPHGDITQINE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP H++LLAGFPCQ FS AG
Sbjct: 66 NNIPKHNILLAGFPCQAFSIAG 87


>gi|86136173|ref|ZP_01054752.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
 gi|85827047|gb|EAQ47243.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
          Length = 399

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 5/79 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           DLF GIGG+R+  E         C F+SE N +S +TY ANF +   + GDI +I   +I
Sbjct: 54  DLFAGIGGLRVGFEAAGG----TCVFTSEWNRFSQETYSANFGDEHPLSGDITEISEAEI 109

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P HDVLLAGFPCQPFS AG
Sbjct: 110 PAHDVLLAGFPCQPFSIAG 128


>gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
 gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
          Length = 377

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           ++  DLFCGIGG R   +  F+  ++E  C FSS+I+ Y+  +Y+ANF    + GDI KI
Sbjct: 74  IRYIDLFCGIGGFRYASQYAFDKLDLEGKCVFSSDIDKYAQVSYEANFGERPM-GDITKI 132

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +IPD D+L  GFPCQ FS  G
Sbjct: 133 EASEIPDFDILFGGFPCQAFSICG 156


>gi|238922589|ref|YP_002936102.1| modification methylase [Eubacterium rectale ATCC 33656]
 gi|238874261|gb|ACR73968.1| modification methylase [Eubacterium rectale ATCC 33656]
          Length = 392

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG+RL  E         C +S+E N YS +TY ANF      GDI K+  + IP
Sbjct: 69  DLFAGIGGMRLAYENVGGR----CVYSNEWNKYSQQTYYANFGEQPE-GDITKVDAKTIP 123

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+L+AGFPCQPFS AG
Sbjct: 124 DHDILVAGFPCQPFSIAG 141


>gi|1709152|sp|P50185|MTD5_DACSA RecName: Full=Modification methylase DsaV; Short=M.DsaV; AltName:
          Full=Cytosine-specific methyltransferase DsaV
 gi|505694|gb|AAA86046.1| DsaV methyltransferase [Dactylococcopsis salina]
          Length = 351

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG+R+  E+       +C FSSEI+ +  +TY+ANF   +  GDI K+  
Sbjct: 6  LKFIDLFAGIGGMRIPFEEL----GGKCVFSSEIDKHCQRTYEANF-GEMPTGDITKLSA 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP HD+LLAGFPCQ FSQ G
Sbjct: 61 DSIPYHDLLLAGFPCQAFSQGG 82


>gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 379

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKI 59
           ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN   FP+    GDI KI
Sbjct: 73  RMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGDFPD----GDITKI 125

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDH++L+ GFPC  FSQAG
Sbjct: 126 DEKDIPDHEILVGGFPCVAFSQAG 149


>gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae]
          Length = 379

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKI 59
           ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN   FP+    GDI KI
Sbjct: 73  RMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGDFPD----GDITKI 125

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDH++L+ GFPC  FSQAG
Sbjct: 126 DEKDIPDHEILVGGFPCVAFSQAG 149


>gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName:
           Full=Cytosine-specific methyltransferase SsoII
 gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4]
          Length = 379

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKI 59
           ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN   FP+    GDI KI
Sbjct: 73  RMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGDFPD----GDITKI 125

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDH++L+ GFPC  FSQAG
Sbjct: 126 DEKDIPDHEILVGGFPCVAFSQAG 149


>gi|317497297|ref|ZP_07955620.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895366|gb|EFV17525.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 385

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIR    Q F  +     +SSE + ++ KTY+ NF   +  GDI  +  
Sbjct: 72  FKQIDLFAGIGGIR----QAFQRQGGYNVYSSEWDKFAQKTYRINF-GEIPDGDITLVSE 126

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 127 NDIPDHDILLAGFPCQPFSQAG 148


>gi|50914506|ref|YP_060478.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|40218542|gb|AAR83196.1| type II modification methylase [Streptococcus pyogenes]
 gi|50261587|gb|AAT72355.1| methylase [Streptococcus pyogenes]
 gi|50903580|gb|AAT87295.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|114386439|gb|ABI74454.1| DNA methyltransferase [Streptococcus pyogenes]
          Length = 408

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL  + T     VE  F+SE + ++ KTY  NF +T   GDI +I  
Sbjct: 101 FKMIDLFAGIGGTRLGFQLT---NEVETVFTSEWDKFAQKTYITNFGDTPE-GDITQIDE 156

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L+AGFPCQ FSQAG
Sbjct: 157 NTIPDHDILVAGFPCQAFSQAG 178


>gi|323525262|ref|YP_004227415.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
 gi|323382264|gb|ADX54355.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
          Length = 428

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIA 57
            +  DLF GIGGIR    + F      C F+SE N +S KTYQ N  +        GDI 
Sbjct: 73  FRFIDLFAGIGGIR----RGFEAHGGRCVFTSEWNEFSKKTYQQNHRDADGTHQFVGDIV 128

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                D+P HDVLLAGFPCQPFS AG
Sbjct: 129 SFAENDVPAHDVLLAGFPCQPFSIAG 154


>gi|91782477|ref|YP_557683.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
 gi|91686431|gb|ABE29631.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
          Length = 418

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/86 (47%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIA 57
            ++ DLF GIGGIR    + F      C F+SE N +S KTYQ N+ +        GDI 
Sbjct: 69  FRLVDLFAGIGGIR----RGFEAHGGRCVFTSEWNDFSKKTYQENYRDCDDAHQFVGDIV 124

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 +P HDVLLAGFPCQPFS AG
Sbjct: 125 SFDVASVPSHDVLLAGFPCQPFSIAG 150


>gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 272

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKI 59
           ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN   FP+    GDI KI
Sbjct: 73  RMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGDFPD----GDITKI 125

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDH++L+ GFPC  FSQAG
Sbjct: 126 DEKDIPDHEILVGGFPCVAFSQAG 149


>gi|257060181|ref|YP_003138069.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256590347|gb|ACV01234.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 336

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 8/90 (8%)

Query: 1   MLKITDLFCGIGGIR--LDLEQTFNHRNVE-----CFFSSEINPYSVKTYQANFPNTLIF 53
           +LK +DLFCGIGG R  LD+  + + R  +     C FSS+I+P + K Y+ NF     F
Sbjct: 15  ILKYSDLFCGIGGFRVALDIVCSTSKRWDKKIKPICVFSSDIDPDAQKNYELNFGEK-PF 73

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI KI+ Q IP+H++L AGFPCQPFS  G
Sbjct: 74  GDITKIEAQSIPNHNLLFAGFPCQPFSICG 103


>gi|219724141|ref|YP_002477179.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
          burgdorferi 156a]
 gi|225575842|ref|YP_002724642.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
 gi|219693145|gb|ACL34349.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
          burgdorferi 156a]
 gi|225546742|gb|ACN92742.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
          Length = 311

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+ L++    + +EC FS +I+ Y+   YQ NF +   +GD+ +I 
Sbjct: 1  MFKFIDLFCGIGGFRVALQK----QGMECVFSCDIDKYAQTAYQKNFGDKP-YGDVTEIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP H++L AGFPCQPFS +G
Sbjct: 56 EDKIPRHEILCAGFPCQPFSISG 78


>gi|224796590|ref|YP_002641667.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|223929176|gb|ACN23896.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|312149869|gb|ADQ29935.1| DNA-cytosine methyltransferase [Borrelia burgdorferi N40]
          Length = 324

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+ L++    + +EC FS +I+ Y+   YQ NF +   +GD+ +I 
Sbjct: 14 MFKFIDLFCGIGGFRVALQK----QGMECVFSCDIDKYAQTAYQKNFGDKP-YGDVTEIP 68

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP H++L AGFPCQPFS +G
Sbjct: 69 EDKIPRHEILCAGFPCQPFSISG 91


>gi|315637499|ref|ZP_07892709.1| modification methylase EcoRII [Arcobacter butzleri JV22]
 gi|315478217|gb|EFU68940.1| modification methylase EcoRII [Arcobacter butzleri JV22]
          Length = 326

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGGIR   E+ F   + E  F+SE++ Y+   Y  N+ N   +GDI KI  +
Sbjct: 21 KFIDLFAGIGGIRTGFEKVFKEES-EFVFASELDRYAQIAYFENY-NEKPYGDITKINEE 78

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD++LAGFPCQ FS AG
Sbjct: 79 DIPNHDIVLAGFPCQAFSIAG 99


>gi|170691874|ref|ZP_02883038.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
 gi|170143158|gb|EDT11322.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
          Length = 438

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIA 57
            +  DLF GIGGIR    + F     +C F+SE N +S KTYQ N  +        GDI 
Sbjct: 83  FRFIDLFAGIGGIR----RGFEAHGGQCVFTSEWNEFSKKTYQQNHRDADDAHQFVGDIV 138

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                +IP HDVLLAGFPCQPFS AG
Sbjct: 139 SFAEDEIPPHDVLLAGFPCQPFSIAG 164


>gi|326571776|gb|EGE21785.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC7]
          Length = 458

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 5/81 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF GIGGIRL  E+        C FSSE + ++ +TYQ N  + + FGDI +I   
Sbjct: 121 KFIDLFAGIGGIRLGAERN----GGLCVFSSEFDKFAQQTYQLNH-HEMPFGDITQIDAN 175

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           ++P HD+LLAGFPCQPFS +G
Sbjct: 176 NLPSHDLLLAGFPCQPFSYSG 196


>gi|307729019|ref|YP_003906243.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
 gi|307583554|gb|ADN56952.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
          Length = 428

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIA 57
            +  DLF GIGGIR    + F      C F+SE N +S KTYQ N  +        GDI 
Sbjct: 73  FRFIDLFAGIGGIR----RGFEAHGGRCVFTSEWNEFSKKTYQQNHRDPDDAHQFVGDIV 128

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
               Q +P HDVLLAGFPCQPFS AG
Sbjct: 129 SFPEQSVPSHDVLLAGFPCQPFSIAG 154


>gi|169334482|ref|ZP_02861675.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259199|gb|EDS73165.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 337

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          ++  DLF GIGGIRL  E  F   N+E  F SE + Y+ KTY  NF +   I GDI +I 
Sbjct: 6  IRSIDLFAGIGGIRLGFENVFKD-NIETVFVSEWDKYAKKTYMENFNDDFEIAGDITEID 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP+ D+ LAGFPCQ FS AG
Sbjct: 65 ETSIPNFDICLAGFPCQAFSLAG 87


>gi|166367718|ref|YP_001659991.1| modification methylase [Microcystis aeruginosa NIES-843]
 gi|166090091|dbj|BAG04799.1| modification methylase [Microcystis aeruginosa NIES-843]
          Length = 159

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLFCG+GG R+ +E+    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFIDLFCGLGGFRVAIERVCRQKNLESDCVFSCDIDKDARAIYHANFGDQPQ-GDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|226942156|ref|YP_002797230.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|226717083|gb|ACO76221.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
          Length = 420

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 6/80 (7%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIKTQD 63
           DLF GIGGIR    Q F      C F+SE + Y+ KTY  N       + GDI ++   D
Sbjct: 75  DLFAGIGGIR----QAFEDVGGRCVFTSEWDSYAQKTYAENHRRDAHALNGDITQVGAAD 130

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           IP HDVLLAGFPCQPFS AG
Sbjct: 131 IPAHDVLLAGFPCQPFSIAG 150


>gi|261337441|ref|ZP_05965325.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
 gi|270277829|gb|EFA23683.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
          Length = 442

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPNTLIFGDIAKI 59
            +  DLF GIGGIR        H      FSSE N +S +TY+ N  F  T+  GDI ++
Sbjct: 73  FRTIDLFAGIGGIRRGFATAGGH----AVFSSEWNEFSTRTYRTNYGFAETMA-GDITQV 127

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              DIPD DV+LAGFPCQPFS AG
Sbjct: 128 DANDIPDCDVVLAGFPCQPFSLAG 151


>gi|304373674|ref|YP_003858419.1| putative DNA-methyltransferase, type II restriction-modification
          system [Enterobacteria phage RB16]
 gi|299829630|gb|ADJ55423.1| putative DNA-methyltransferase, type II restriction-modification
          system [Enterobacteria phage RB16]
          Length = 302

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DL  G+GG+R   +  F    VEC  +SEI+ ++ +TY  N+ +  + GD+  I  
Sbjct: 1  MKIIDLCAGVGGVRFGFDNAFG--GVECLLTSEIDKHAQQTYIENWGDDNLQGDLFAIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NKVPDHDILLAGFPCQAFSKAG 80


>gi|56461628|ref|YP_156909.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
 gi|56180638|gb|AAV83360.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
          Length = 419

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLF G+GGIRL  E+        C FSSEI+ ++  TY  N   T+ +GDI KI  
Sbjct: 99  IKFIDLFAGVGGIRLAFEKA----GAACVFSSEIDTHAQLTYFTNH-GTVPYGDITKIDA 153

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQPFS  G
Sbjct: 154 DSIPSHDILCAGFPCQPFSHIG 175


>gi|1171048|sp|P25263|MTC1_HERAU RecName: Full=Modification methylase HgiCI; Short=M.HgiCI;
          AltName: Full=Cytosine-specific methyltransferase HgiCI
 gi|515372|emb|CAA38933.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 420

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 52/85 (61%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          MLK  DLF GIGG+RL  EQ  +   +E  C  SSEI+ ++  TY  NF      GDI +
Sbjct: 1  MLKFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNFHEQSQ-GDITQ 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  QD P  D LLAGFPCQPFS AG
Sbjct: 60 I--QDFPSFDFLLAGFPCQPFSYAG 82


>gi|16923911|gb|AAL31632.1|AF438204_2 C5 DNA methyltransferase [Positive selection vector pMTet1]
          Length = 418

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF GIGGIR    Q+F     +C FSSEI+P++  TY  NF   + FGDI K++  
Sbjct: 106 KFIDLFSGIGGIR----QSFEVNGGKCVFSSEIDPFAKFTYYTNF-GVVPFGDITKVEAT 160

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+L AGFP QP+S  G
Sbjct: 161 TIPEHDILCAGFPGQPWSHMG 181


>gi|238783073|ref|ZP_04627100.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
 gi|238716074|gb|EEQ08059.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
          Length = 475

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 57/102 (55%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR    + F     +C F+SE NPY+V+TY+AN+   P+   F  DI 
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNPYAVRTYKANWYCDPDEHRFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EITLSETAEISDEEAYKYIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|254409526|ref|ZP_05023307.1| DNA-cytosine methyltransferase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183523|gb|EDX78506.1| DNA-cytosine methyltransferase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 437

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 52/84 (61%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF GIGGIRL  EQ  N  N   EC  +SEI+P     Y+ NF N  + GDI KI
Sbjct: 4  IRFIDLFAGIGGIRLAFEQAANTLNYKTECVLASEISPDCQWVYKNNF-NHEVLGDIRKI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P HDVLLAGFPCQ FS AG
Sbjct: 63 --NQLPPHDVLLAGFPCQSFSYAG 84


>gi|317182001|dbj|BAJ59785.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
           pylori F57]
          Length = 434

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +++  DLF G+GG+RL  EQ  +   +  +C  SSEI   +++ Y  +F  T   GDI +
Sbjct: 28  IVRFVDLFAGLGGLRLGFEQASSSIGLKSQCILSSEIKKSALQAYTDHFKETPQ-GDITQ 86

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I T DIP+ DVLLAGFPCQPFS AG
Sbjct: 87  INTNDIPNFDVLLAGFPCQPFSNAG 111


>gi|159027151|emb|CAO86782.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF GIGG R+ LE        +C FSSEI+P+S K Y AN+ +     DI K++
Sbjct: 1  MWTFIDLFAGIGGFRIALENL----GCQCVFSSEIDPHSQKVYLANYGHLPDNQDIRKLE 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +PDHD+L  GFPCQ FS AG
Sbjct: 57 AKTVPDHDILCGGFPCQAFSIAG 79


>gi|315608882|ref|ZP_07883855.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
 gi|315249409|gb|EFU29425.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
          Length = 312

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGGIRL  E    H    C FSSE +  + KTY+ANF      GDI KI+ +DIP
Sbjct: 10 DLFAGIGGIRLGFESAGGH----CVFSSEFDENACKTYEANF-GEHPSGDITKIEAKDIP 64

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D+LL GFPCQ FS  G
Sbjct: 65 DFDILLGGFPCQAFSIIG 82


>gi|166368121|ref|YP_001660394.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
 gi|166090494|dbj|BAG05202.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
          Length = 347

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G+GG R+ LE        +C FSSEI+P+S K Y AN+ +     DI K++
Sbjct: 1  MWTFIDLFAGVGGFRIALENL----GCQCVFSSEIDPHSQKVYLANYGHLPDNQDIRKLE 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +PDHD+L  GFPCQ FS AG
Sbjct: 57 AKTVPDHDILCGGFPCQAFSIAG 79


>gi|119511452|ref|ZP_01630563.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
 gi|119463917|gb|EAW44843.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
          Length = 433

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF GIGGIRL  EQ  N  N+E  C  SSEIN  +   Y+ NF N    GD+  I
Sbjct: 4  IRFVDLFSGIGGIRLAFEQAANSLNIESECVLSSEINTDAQFVYETNF-NHKSLGDVRLI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +P+H+VLLAGFPCQ FS AG
Sbjct: 63 --EKLPEHEVLLAGFPCQSFSHAG 84


>gi|227485932|ref|ZP_03916248.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227235977|gb|EEI85992.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 358

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G+GG    L       + +  F+SEI+ ++ K+Y +NF    ++GDI KI  
Sbjct: 5  IKIASLFSGVGGFEEGLR--LAKIDFDLVFASEIDRFAQKSYSSNFDTDNLYGDITKINE 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPDHD+LLAGFPCQ FS AG
Sbjct: 63 KNIPDHDLLLAGFPCQSFSIAG 84


>gi|332673536|gb|AEE70353.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 434

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +++  DLF G+GG+RL  EQ  +   +  +C  SSEI   +++ Y  +F  T   GDI +
Sbjct: 28  IVRFVDLFAGLGGLRLGFEQASSSIGLKSQCILSSEIKKSALQAYIDHFKETPQ-GDITQ 86

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I T DIP+ DVLLAGFPCQPFS AG
Sbjct: 87  INTNDIPNFDVLLAGFPCQPFSNAG 111


>gi|152998369|ref|YP_001343204.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
 gi|150839293|gb|ABR73269.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
          Length = 417

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 51/85 (60%), Gaps = 11/85 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAK 58
            +  DLF GIGG+RL  +Q        C FSSE + ++  TY+ N   FP    FGDI  
Sbjct: 96  FRFIDLFAGIGGVRLGFQQAGG----TCVFSSEFDKHAQLTYKKNHGEFP----FGDITL 147

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 ISPESIPAHDVLLAGFPCQPFSHAG 172


>gi|319778406|ref|YP_004129319.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis
          MCE9]
 gi|317108430|gb|ADU91176.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis
          MCE9]
          Length = 160

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIP 65
          +F GIG IRL  EQ F ++ ++  + SEI+  +VKTY +NF  N LI GD+ K    DIP
Sbjct: 1  MFAGIGCIRLGFEQAFGNK-LKTVYVSEIDSNAVKTYTSNFSSNKLIHGDVTKEVESDIP 59

Query: 66 DHDVLLAGFPCQPFSQAG 83
           HD LLAGFPC  FS AG
Sbjct: 60 PHDFLLAGFPCHAFSAAG 77


>gi|159026805|emb|CAO86650.1| ngoBIM [Microcystis aeruginosa PCC 7806]
          Length = 331

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF G+GG RL +EQ    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFIDLFSGLGGFRLAIEQVCRPKNLESDCVFSCDIDKDAQAIYHANFGDQ-PRGDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|119488852|ref|ZP_01621814.1| NgoIM [Lyngbya sp. PCC 8106]
 gi|119455013|gb|EAW36155.1| NgoIM [Lyngbya sp. PCC 8106]
          Length = 385

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
          +K  +LF GIGG RL ++      N+E  ++++ +  S + Y++NF  N+++  DI +I 
Sbjct: 1  MKAIELFAGIGGFRLGMKGA----NIETVWANDSSELSCRVYESNFGQNSIVLADITQID 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIP HD L AGFPCQPFS AG
Sbjct: 57 LSDIPHHDFLTAGFPCQPFSPAG 79


>gi|167746073|ref|ZP_02418200.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
 gi|167654588|gb|EDR98717.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
          Length = 312

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LFCG GG    L++ F+       ++++ + Y+V+TY+ANF + +I GDI +I+ 
Sbjct: 1  MRVLSLFCGCGG----LDKGFDETGYNIVWANDFDKYAVETYKANFGDNVILGDINEIEL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P+ DVL+ GFPCQPFS  G
Sbjct: 57 NSLPEFDVLIGGFPCQPFSMMG 78


>gi|259500984|ref|ZP_05743886.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
 gi|302190566|ref|ZP_07266820.1| DNA-cytosine methyltransferase [Lactobacillus iners AB-1]
 gi|259167678|gb|EEW52173.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
          Length = 336

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYQMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|309807025|ref|ZP_07701007.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          03V1-b]
 gi|308166645|gb|EFO68842.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          03V1-b]
          Length = 336

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYQMNFGDTP-GGDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|254443346|ref|ZP_05056822.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198257654|gb|EDY81962.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 349

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           +D+F G GG R  LE+        C FS E++ ++ +TYQANF  T  +GDI  +  + +
Sbjct: 37  SDIFAGAGGGRFALERL----EGRCVFSCELDKFAQRTYQANFGET-PYGDIFDVSPKSV 91

Query: 65  PDHDVLLAGFPCQPFSQAG 83
           P H++L AGFPCQPFS AG
Sbjct: 92  PPHNILFAGFPCQPFSHAG 110


>gi|325912401|ref|ZP_08174796.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          143-D]
 gi|325475743|gb|EGC78914.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          143-D]
          Length = 336

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDRFAQETYQMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|238787820|ref|ZP_04631617.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
 gi|238724163|gb|EEQ15806.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
          Length = 475

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR    + F     +C F+SE NPY+V+TY+AN+   P    F  DI 
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNPYAVRTYKANWYCDPVEHRFNSDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           +I   +                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EITLSENTEISDEEAYRNIDEHIPDHDVLLAGFPCQPFSLAG 193


>gi|296114735|ref|ZP_06833385.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978659|gb|EFG85387.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 419

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
            +  DLF GIGG+R+  E+        C F+SE + +S +TY  N+P N  I GDI    
Sbjct: 70  FRFIDLFAGIGGLRIGFEEIGG----RCVFTSEWDRFSRQTYALNYPDNHEISGDIRPFA 125

Query: 61  TQD--IPDHDVLLAGFPCQPFSQAG 83
                IP+HDVLLAGFPCQPFS AG
Sbjct: 126 EDPSLIPEHDVLLAGFPCQPFSIAG 150


>gi|157827820|ref|YP_001496884.1| site-specific DNA methylase [Rickettsia bellii OSU 85-389]
 gi|157803124|gb|ABV79847.1| Site-specific DNA methylase [Rickettsia bellii OSU 85-389]
          Length = 165

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     +N+EC FSS+I+    + Y+ NF +    GDI +I 
Sbjct: 1  MYKFIDLFCGIGGFRKALES----KNLECVFSSDIDKDVQEAYKRNFGDKP-HGDITEIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ANKIPKHDILCAGFPCQSFSISG 78


>gi|307152213|ref|YP_003887597.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982441|gb|ADN14322.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 317

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +++  DLFCGIGG R+   Q     N+  +C FSS+I+P + + Y   F      GDI K
Sbjct: 12 VIRYIDLFCGIGGFRIAASQVCLEYNIKPQCVFSSDIDPDAQQVYSKYFGEKPA-GDITK 70

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    IPDH +LLAGFPCQPFS  G
Sbjct: 71 IPADSIPDHHLLLAGFPCQPFSICG 95


>gi|67458530|ref|YP_246154.1| site-specific DNA methylase [Rickettsia felis URRWXCal2]
 gi|67004063|gb|AAY60989.1| Site-specific DNA methylase [Rickettsia felis URRWXCal2]
          Length = 105

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     + +EC FSS+I+    + Y+ NF +   +GDI +I 
Sbjct: 1  MYKFIDLFCGIGGFRKALEA----KGLECVFSSDIDKDVQEAYKRNFGDKP-YGDITEIS 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ENKIPKHDILCAGFPCQSFSISG 78


>gi|91206207|ref|YP_538562.1| site-specific DNA methylase [Rickettsia bellii RML369-C]
 gi|91069751|gb|ABE05473.1| Site-specific DNA methylase [Rickettsia bellii RML369-C]
          Length = 308

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     +N+EC FSS+I+    + Y+ NF +    GDI ++ 
Sbjct: 1  MYKFIDLFCGIGGFRKALES----KNLECVFSSDIDKDVQEAYKRNFGDKP-HGDITEMP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ANKIPKHDILCAGFPCQSFSISG 78


>gi|323495143|ref|ZP_08100228.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
 gi|323310583|gb|EGA63762.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
          Length = 443

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 12/82 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
           DLF GIGGIR    Q F      C F+SE + ++ KTY  N+   PN    GDI KI  +
Sbjct: 88  DLFAGIGGIR----QPFQELGGHCVFTSEWDKFAQKTYLHNYGEMPN----GDITKICVK 139

Query: 63  D-IPDHDVLLAGFPCQPFSQAG 83
           + IP+HD+LL GFPCQ FSQAG
Sbjct: 140 EQIPEHDILLGGFPCQAFSQAG 161


>gi|309803758|ref|ZP_07697844.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          11V1-d]
 gi|308164167|gb|EFO66428.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          11V1-d]
          Length = 336

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAQCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|218439646|ref|YP_002377975.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218172374|gb|ACK71107.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 320

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQT---FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          ++K  DLFCGIGG RL + Q    +N +++ C FSS+I+  +   Y+ NF + L  GDI 
Sbjct: 12 VIKYVDLFCGIGGFRLAVNQVSEGYNFKSI-CVFSSDIDGDAQTVYRENFGD-LPEGDIT 69

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI  + IP H +LLAGFPCQPFS  G
Sbjct: 70 KIPAEMIPHHHLLLAGFPCQPFSICG 95


>gi|329920363|ref|ZP_08277095.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
 gi|328936039|gb|EGG32492.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|312872570|ref|ZP_07732638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2062A-h1]
 gi|311091932|gb|EFQ50308.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2062A-h1]
          Length = 336

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 SIPDHDILCAGFPCQPFSISG 88


>gi|256760956|ref|ZP_05501536.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
 gi|256682207|gb|EEU21902.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
          Length = 405

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF GIGG RL  + T     V+  FSSE + ++ KTY ANF      GDI +I  + 
Sbjct: 97  MIDLFAGIGGTRLGFQLT---GKVKSVFSSEWDKFAQKTYFANF-GEYPHGDITQIDEKV 152

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           +P+HD+L+AGFPCQ FSQAG
Sbjct: 153 VPNHDILVAGFPCQAFSQAG 172


>gi|309808410|ref|ZP_07702309.1| putative modification methylase HhaI [Lactobacillus iners LactinV
          01V1-a]
 gi|308168238|gb|EFO70357.1| putative modification methylase HhaI [Lactobacillus iners LactinV
          01V1-a]
          Length = 198

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|320326214|gb|EFW82269.1| cytosine-specific DNA-methyltransferase [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 448

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L L++       EC F++E   +  + Y  NF      GDI  +  
Sbjct: 4  FRFVDLFAGLGGFHLALDRLGG----ECVFAAEWKEHLREIYNVNF-GLYPAGDITSVSL 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPDHDVL AGFPCQPFS+AG
Sbjct: 59 KDIPDHDVLTAGFPCQPFSKAG 80


>gi|121997219|ref|YP_001002006.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
 gi|121588624|gb|ABM61204.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
          Length = 436

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 19/93 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKT-- 61
           DLF G+GGIR   E    H    C FSSE + ++++TY+ANF N    I  DI +I    
Sbjct: 74  DLFAGVGGIRQGFESVGGH----CVFSSEWDRFALQTYRANFGNEGEEIQTDIRQITAVS 129

Query: 62  -----------QDIPDHDVLLAGFPCQPFSQAG 83
                      + IP HDVLLAGFPCQPFS AG
Sbjct: 130 DDADENSRSIDERIPQHDVLLAGFPCQPFSLAG 162


>gi|312874943|ref|ZP_07734962.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2053A-b]
 gi|311089688|gb|EFQ48113.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2053A-b]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|315653956|ref|ZP_07906872.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
 gi|315488652|gb|EFU78298.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|309809622|ref|ZP_07703479.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
          2503V10-D]
 gi|308170103|gb|EFO72139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
          2503V10-D]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|309804726|ref|ZP_07698791.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          09V1-c]
 gi|312871535|ref|ZP_07731628.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          3008A-a]
 gi|325913106|ref|ZP_08175476.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          60-B]
 gi|308166118|gb|EFO68336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          09V1-c]
 gi|311092930|gb|EFQ51281.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          3008A-a]
 gi|325477527|gb|EGC80669.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          60-B]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|312874304|ref|ZP_07734336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2052A-d]
 gi|311090177|gb|EFQ48589.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2052A-d]
          Length = 336

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++   
Sbjct: 13 KFIDLFAGIGGFRLALESF----GAKCVYSNEWDKFAQETYHMNFGDTPE-GDITQVDET 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IPDHD+L AGFPCQPFS +G
Sbjct: 68 RIPDHDILCAGFPCQPFSISG 88


>gi|67922277|ref|ZP_00515790.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67855853|gb|EAM51099.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 226

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 8/89 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE-------CFFSSEINPYSVKTYQANFPNTLIFG 54
           LK  DLFCGIGG R+ LE   +H   +       C FSS+I+  + K Y+ANF +    G
Sbjct: 16  LKYIDLFCGIGGFRIALELVCSHYKFKEHKIKPICVFSSDIDADAQKNYEANFKDKPQ-G 74

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI +I  + IP+H++LLAGFPCQ FS  G
Sbjct: 75  DITQIPVELIPNHNLLLAGFPCQTFSICG 103


>gi|113478034|ref|YP_724095.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169082|gb|ABG53622.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 413

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
           LK  +LF GIGG  L +       N++  ++++++    + YQ+NF  ++++  DI KI 
Sbjct: 29  LKAIELFAGIGGFCLGMRAA----NIKTIWANDVSKLCCQVYQSNFGSSSIVLDDINKIN 84

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             +IP+HD+L AGFPCQPFSQAG
Sbjct: 85  LLEIPEHDILTAGFPCQPFSQAG 107


>gi|255279955|ref|ZP_05344510.1| modification methylase EcoRII [Bryantella formatexigens DSM
          14469]
 gi|255269728|gb|EET62933.1| modification methylase EcoRII [Bryantella formatexigens DSM
          14469]
          Length = 311

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG    L++ F     +  ++++ + Y+V+TY+ANF   ++ GDI +I  
Sbjct: 1  MKVVSLFSGIGG----LDRGFLDTGYDVIWANDFDKYAVQTYKANFGEHIVLGDINEIPL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPD DVL+ GFPCQPFS  G
Sbjct: 57 DEIPDCDVLIGGFPCQPFSMMG 78


>gi|85709931|ref|ZP_01040996.1| Type II restriction-modification system methylation subunit
          [Erythrobacter sp. NAP1]
 gi|85688641|gb|EAQ28645.1| Type II restriction-modification system methylation subunit
          [Erythrobacter sp. NAP1]
          Length = 370

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 11/81 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
          DLF GIGG+R+     F+    EC FSSE + ++  TY+ NF   PN    GDI KI   
Sbjct: 26 DLFAGIGGMRI----PFDELGGECTFSSEWDKFAQDTYELNFGHRPN----GDITKIDAS 77

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++  HD+LL GFPCQ FS AG
Sbjct: 78 EVGAHDILLGGFPCQAFSNAG 98


>gi|331002097|ref|ZP_08325616.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411191|gb|EGG90607.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 706

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 49/85 (57%), Gaps = 11/85 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
          LK  DLF GIGG RL  E        +C FSSEI+ ++ + Y+ NF   P      DI K
Sbjct: 6  LKFIDLFAGIGGFRLGFEDA----GCKCVFSSEIDEHACEMYELNFGENPKC----DITK 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +DIPD D+L AGFPCQ FS  G
Sbjct: 58 LNIKDIPDFDILCAGFPCQAFSICG 82


>gi|119484300|ref|ZP_01618917.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
 gi|119457774|gb|EAW38897.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
          Length = 449

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          MLK  DLF GIGG+RL  E+      +  EC  +SEI+  + + Y  NF + +  GDI +
Sbjct: 1  MLKFIDLFAGIGGLRLGFERGIASLGLRGECLLASEIDAEASQVYSQNFLH-VPEGDIRQ 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK+  +P HDVLLAGFPCQ FS AG
Sbjct: 60 IKS--LPKHDVLLAGFPCQSFSYAG 82


>gi|119493789|ref|ZP_01624358.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
 gi|119452484|gb|EAW33671.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
          Length = 689

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGGIRL  E+       +C FSSE +  + +TY+ANF    + GDI  I    IP
Sbjct: 14 DLFAGIGGIRLPFEELGG----KCVFSSEWDEAAQETYEANFGERPL-GDITTIDPGSIP 68

Query: 66 DHDVLLAGFPCQPFSQAG 83
           HD+LLAGFPCQ FS  G
Sbjct: 69 HHDILLAGFPCQAFSIIG 86


>gi|46581246|ref|YP_012054.1| type II DNA modification methyltransferase [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46450667|gb|AAS97314.1| type II DNA modification methyltransferase, putative
          [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234912|gb|ADP87766.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 358

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 48/87 (55%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---------GDI 56
          DLF GIGGIRL  E         C  S+E + Y+ KTY+A F  +  F         GDI
Sbjct: 11 DLFAGIGGIRLGFEAAGG----RCVMSAEYDKYAQKTYRAFFGESPDFSEIMSVSPPGDI 66

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           K+    +PDHDVL  GFPCQPFS AG
Sbjct: 67 TKLPPHLVPDHDVLTGGFPCQPFSLAG 93


>gi|300717257|ref|YP_003742060.1| cytosine-specific methyltransferase [Erwinia billingiae Eb661]
 gi|299063093|emb|CAX60213.1| Cytosine-specific methyltransferase [Erwinia billingiae Eb661]
          Length = 466

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N YSV+TY+AN+   P+   F  DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKYSVRTYKANWYCDPDAHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  + +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGNPAVSEQQAYQHIDKQVPDHDVLLAGFPCQPFSLAG 190


>gi|114571596|ref|YP_758276.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
 gi|114342058|gb|ABI67338.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
          Length = 406

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGG+RL  E        +C F+SE + +S +TY+ANF    +    GDI  
Sbjct: 66  FRFIDLFAGIGGLRLGFEAIGG----KCVFTSEWDVHSQRTYRANFLDDDSHTFAGDIRP 121

Query: 59  IKT--QDIPDHDVLLAGFPCQPFSQAG 83
             T    +P+HDVLLAGFPCQPFS AG
Sbjct: 122 YGTDPSKVPEHDVLLAGFPCQPFSLAG 148


>gi|153870185|ref|ZP_01999636.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152073352|gb|EDN70367.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 235

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGGIRL  E        +C FSSE + Y+  TY+ANF      GDI KI  + IP
Sbjct: 8  DLFAGIGGIRLGFESI----GGKCVFSSEWDKYAQDTYEANFGERPE-GDITKINAKTIP 62

Query: 66 DHDVLLAGFPCQPFSQAG 83
          +H++LL GFPCQ FS  G
Sbjct: 63 EHNILLGGFPCQAFSICG 80


>gi|193216537|ref|YP_001999779.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
          arthritidis 158L3-1]
 gi|193001860|gb|ACF07075.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
          arthritidis 158L3-1]
          Length = 327

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG R+ LE        +C +S+E + ++ + Y+ NF N +  GDI  I  
Sbjct: 12 LKFIDLFAGLGGFRIALESC----GAKCVYSNEWDKHAQEVYKMNF-NEIPDGDITLINE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHDVL AGFPCQ FS +G
Sbjct: 67 NDIPDHDVLCAGFPCQAFSISG 88


>gi|228469904|ref|ZP_04054843.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
 gi|228308539|gb|EEK17327.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
          Length = 395

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------FPNTLIF 53
           L   DLF GIGG  L +         +C F+SE + Y+ +TY+AN        F   L  
Sbjct: 34  LTFIDLFAGIGGFHLAMHSV----GAQCVFASEWDQYARQTYEANYRKLAPELFSRGLFA 89

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI K+    IP  D+L AGFPCQPFS AG
Sbjct: 90  GDITKVDPASIPPFDILCAGFPCQPFSVAG 119


>gi|78778033|ref|YP_394348.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
          deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498573|gb|ABB45113.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
          deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 657

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 12/86 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--------NTLIFGDIA 57
          DLF GIGG      Q  +    EC F+SEI+ Y+ KTY+ NF         N L   DI 
Sbjct: 10 DLFAGIGG----FHQAMHELGGECVFASEIDIYARKTYKYNFKKYSPELFENGLFNEDIK 65

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I  ++IPD D+L AGFPCQPFSQAG
Sbjct: 66 TIMPEEIPDFDLLCAGFPCQPFSQAG 91


>gi|170769440|ref|ZP_02903893.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
 gi|170121764|gb|EDS90695.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
          Length = 472

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANYYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDAAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|259909642|ref|YP_002649998.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965264|emb|CAX56796.1| Cytosine-specific methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|261863687|gb|ACY01298.1| unknown [Erwinia pyrifoliae]
 gi|283479721|emb|CAY75637.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 473

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIRKGFEEIGG----QCVFTSEWNKDAVRTYKANWYNDEEVHRFNFDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  +++  D        IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRPEVREDDAYRNIDKEIPDHDVLLAGFPCQPFSLAG 193


>gi|269122857|ref|YP_003305434.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
 gi|268314183|gb|ACZ00557.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
          Length = 329

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG RL LE        EC +S+E +  + K YQ NF + +  GDI  I  
Sbjct: 12 LKFIDLFAGLGGFRLSLESF----GAECVYSNEWDKNAQKVYQMNFGD-MPEGDITLIDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPDHD+L AGFPCQ FS +G
Sbjct: 67 NNIPDHDILCAGFPCQAFSISG 88


>gi|150400370|ref|YP_001324137.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
 gi|150013073|gb|ABR55525.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
          Length = 368

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLE-------QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+  LF G GG+ L  +       Q + H   E  FS++I+  + +TY++NF ++ +  
Sbjct: 35  FKVISLFSGCGGMDLGFKGGFEIFKQHYEHNPYEIIFSNDISDKACRTYESNFCHSSVCA 94

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI  IK +DIP+ D+++ GFPCQ FS AG
Sbjct: 95  DIKDIKNEDIPNADIVIGGFPCQDFSHAG 123


>gi|26554428|ref|NP_758362.1| cytosine-specific DNA methylase [Mycoplasma penetrans HF-2]
 gi|26454438|dbj|BAC44766.1| cytosine-specific DNA methylase [Mycoplasma penetrans HF-2]
          Length = 426

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 7/88 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFP----NTLIFGD 55
          +K  DLF GIGG    LE+    N+ N+EC F SEI+  ++KTY +NF       +   D
Sbjct: 4  IKFIDLFAGIGGFHKALERVAKKNNFNIECVFVSEIDNEAIKTYSSNFSVDKEKIINIRD 63

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + +  +Q +PDHD L AGFPCQ FS AG
Sbjct: 64 LDESASQ-VPDHDFLFAGFPCQTFSNAG 90


>gi|288559284|ref|YP_003422770.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288541994|gb|ADC45878.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 339

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG RL  E        +C FSS+I+ ++ +TY  NF      GDI++I    IP
Sbjct: 34  DLFSGIGGFRLAFESV----GGKCVFSSDIDKWANETYYMNF-GEYPHGDISEIPANQIP 88

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+L AGFPCQPFS  G
Sbjct: 89  DHDILCAGFPCQPFSIGG 106


>gi|50513617|pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
          Methyltransferase: An Insight Into Protein-Protein
          Interactions
 gi|50513618|pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
          Methyltransferase: An Insight Into Protein-Protein
          Interactions
          Length = 327

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|300869073|ref|ZP_07113674.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
          PCC 6506]
 gi|300332930|emb|CBN58870.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
          PCC 6506]
          Length = 345

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG R    Q F +   EC FS E++ +  + Y  NF N + FGDI  +  
Sbjct: 1  MKFIDLFAGIGGFR----QGFENAGFECVFSCEVDKHCREVYSNNF-NEVPFGDIKDVNP 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I D DVL+AGFPCQPFS  G
Sbjct: 56 HEIEDFDVLVAGFPCQPFSICG 77


>gi|118138268|pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
          Sequence Discrimination Of Dna Methyltransferase M.Hhai
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|12084381|pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
          Mutant (T250g) In Complex With Dna And Adohcy
 gi|85544394|pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
          Oligonucleotide Containing 2-Aminopurine As A Target
          Base (Gpgc:gmgc) And Sah
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|160877870|pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine
          Dna Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|127455|sp|P05102|MTH1_HAEPH RecName: Full=Modification methylase HhaI; Short=M.HhaI; AltName:
          Full=Cytosine-specific methyltransferase HhaI
 gi|1065144|pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase,
          Dna And S-Adenosyl-L-Homocysteine
 gi|1942412|pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
          Unmodified Dna And Adohcy
 gi|1942415|pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
          Dna And Adohcy
 gi|2392799|pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
          Hemimethylated Dna And Adohcy
 gi|3660437|pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
          And Dna Containing 4'-Thio-2'deoxycytidine At The
          Target
 gi|4139672|pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139675|pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139680|pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4558252|pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
          And Hemimethylated Dna Containing
          5,6-Dihydro-5-Azacytosine At The Target
 gi|4699814|pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
          Formed In The Presence Of A Short Nonpsecific Dna
          Oligonucleotide
 gi|24158912|pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms
          A Covalent Complex With Dna Methyltransferase
 gi|52695513|pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
          Abasic South Carbocyclic Sugar At Its Target Site
 gi|85544385|pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
          Oligonucleotide Containing 2-Aminopurine Adjacent To
          The Target Base (Pcgc:gmgc) And Sah
 gi|85544388|pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
          Containing 2-Aminopurine Opposite To The Target Base (
          Gcgc:gmpc) And Sah
 gi|85544391|pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
          Containing 2-Aminopurine Outside The  Recognition
          Sequence (Paired With G) And Sah
 gi|116667789|pdb|2HR1|A Chain A, Ternary Structure Of Wt M.Hhai C5-Cytosine Dna
          Methyltransferase With Unmodified Dna And Adohcy
 gi|157831356|pdb|1HMY|A Chain A, Crystal Structure Of The Hhal Dna Methyltransferase
          Complexed With S-Adenosyl-L-Methionine
 gi|290560089|pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing
          A Propane Diol In Place Of The Deoxycytidine Residue
          Targeted For Methylation.
 gi|148949|gb|AAA24989.1| DNA methylase [Haemophilus haemolyticus]
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|161761159|pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine
          Dna Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|158431504|pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
          Methyltransferase With Unmodified Dna And Adohcy
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|189339547|pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With
          13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|189096047|pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With
          13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|296282358|ref|ZP_06860356.1| DNA-cytosine methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 439

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI- 59
            +  DLF GIGG+R+  +    H    C F+SE + ++ +TY+ NF  N  + GD+ +  
Sbjct: 90  FRFIDLFAGIGGLRIGFQGIGGH----CVFTSEWDRFAQETYRVNFRDNHKLHGDVREFA 145

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQAG 83
              + IP+HDVLL GFPCQPFS AG
Sbjct: 146 ENPELIPEHDVLLGGFPCQPFSLAG 170


>gi|312873586|ref|ZP_07733633.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
 gi|311090839|gb|EFQ49236.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
          Length = 487

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 9/83 (10%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIK 60
           DLF G+GGIRL  E+      +  +C FSS+I   ++  Y+ NF   P      DI KI 
Sbjct: 74  DLFSGLGGIRLGFEEALTDYGLTGKCVFSSDIKESAITAYKTNFGENPKC----DITKIN 129

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             ++P+ D LLAGFPCQ FSQAG
Sbjct: 130 PTNLPNFDFLLAGFPCQAFSQAG 152


>gi|294155594|ref|YP_003559978.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
 gi|291600134|gb|ADE19630.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
          Length = 388

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG      Q  ++   EC FSSEI+ Y + TY  NF  +  F DI K+  
Sbjct: 6  FKFIDLFSGIGG----FHQAMSYFGGECVFSSEIDKYCINTYFNNFNISSDF-DITKVNV 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP HD+L AGFPCQ FS+AG
Sbjct: 61 NEIPKHDLLCAGFPCQAFSKAG 82


>gi|327254549|gb|EGE66165.1| modification methylase EcoRII [Escherichia coli STEC_7v]
          Length = 474

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------- 52
            +  DLF GIGGIR    + F +   +C F+SE N  +V+TY+AN+ N  +         
Sbjct: 96  FRFIDLFAGIGGIR----KGFENIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 53  ------FGDIAKIKT-----QDIPDHDVLLAGFPCQPFSQAG 83
                   D+++++      ++IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEVEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|167465361|ref|ZP_02330450.1| DNA-cytosine methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 432

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M    +LF GIGG R  L+Q        C F+SEI+ ++  +Y+A +     + GDI KI
Sbjct: 1  MFTYVELFAGIGGFRSALDQLGG----ICTFASEIDKFATISYRAMYDGAPELCGDITKI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             D+PDHD+L+ GFPCQ FS AG
Sbjct: 57 DASDVPDHDLLVGGFPCQAFSVAG 80


>gi|331668651|ref|ZP_08369499.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331063845|gb|EGI35756.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 458

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 73  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 128

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 129 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 170


>gi|323152708|gb|EFZ38980.1| DNA-cytosine methyltransferase [Escherichia coli EPECa14]
          Length = 374

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|315290247|gb|EFU49625.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 478

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 93  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 149 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 190


>gi|331673470|ref|ZP_08374238.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331069668|gb|EGI41055.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 472

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300923873|ref|ZP_07139889.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300419870|gb|EFK03181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
          Length = 477

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|157145245|ref|YP_001452564.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157082450|gb|ABV12128.1| hypothetical protein CKO_00981 [Citrobacter koseri ATCC BAA-895]
          Length = 477

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFVDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYYCDPQRHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHRDGVSDSEAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|229126345|ref|ZP_04255362.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228657116|gb|EEL12937.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 363

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF G GG+ L LEQ       E  ++++++ ++V+ Y+ N    ++ GDI KI  
Sbjct: 8  LKVVSLFSGCGGLDLGLEQA----GFEILWANDVDKHAVEIYKHNI-GKIVEGDITKISE 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  DVL AGFPCQPFS AG
Sbjct: 63 EEIPSCDVLTAGFPCQPFSSAG 84


>gi|300940416|ref|ZP_07155001.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300454810|gb|EFK18303.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 476

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|300899219|ref|ZP_07117494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|300357175|gb|EFJ73045.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 477

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|301050676|ref|ZP_07197538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300297633|gb|EFJ54018.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 477

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|238919389|ref|YP_002932904.1| DNA cytosine methylase [Edwardsiella ictaluri 93-146]
 gi|238868958|gb|ACR68669.1| modification methylase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIA 57
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 94  FRFIDLFAGIGGIR----KGFESIGGQCVFTSEWNKEAVRTYKANWYNDEDLHTFNMDIR 149

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 150 EITLSAESDISEHDAYKNINQHIPDHDVLLAGFPCQPFSLAG 191


>gi|82776352|ref|YP_402701.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|309789422|ref|ZP_07684012.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
 gi|81240500|gb|ABB61210.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|308922816|gb|EFP68333.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
          Length = 472

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHRFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|74312499|ref|YP_310918.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|73855976|gb|AAZ88683.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|323168918|gb|EFZ54598.1| DNA-cytosine methyltransferase [Shigella sonnei 53G]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300994233|ref|ZP_07180788.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300304943|gb|EFJ59463.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 477

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|284921868|emb|CBG34943.1| DNA-cytosine methyltransferase [Escherichia coli 042]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|315296465|gb|EFU55762.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 476

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|315286667|gb|EFU46100.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 475

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 90  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 145

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 146 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 187


>gi|331663456|ref|ZP_08364366.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|331059255|gb|EGI31232.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331658007|ref|ZP_08358969.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331056255|gb|EGI28264.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300975476|ref|ZP_07173024.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|300410366|gb|EFJ93904.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|293410317|ref|ZP_06653893.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470785|gb|EFF13269.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|289423024|ref|ZP_06424844.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
 gi|289156598|gb|EFD05243.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
          Length = 706

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 11/85 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
          LK  DLF GIGG RL  E        +C FSSEI+ ++ + Y+ NF   P      DI +
Sbjct: 6  LKFIDLFAGIGGFRLGFENA----GCKCVFSSEIDDHACEMYELNFGENPRC----DITQ 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +DIPD D+L AGFPCQ FS  G
Sbjct: 58 LNPKDIPDFDILCAGFPCQAFSICG 82


>gi|82543581|ref|YP_407528.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|81244992|gb|ABB65700.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|332096894|gb|EGJ01883.1| DNA-cytosine methyltransferase [Shigella boydii 3594-74]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|157158517|ref|YP_001463262.1| DNA cytosine methylase [Escherichia coli E24377A]
 gi|157080547|gb|ABV20255.1| DNA-cytosine methyltransferase [Escherichia coli E24377A]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|187732725|ref|YP_001879611.1| DNA cytosine methylase [Shigella boydii CDC 3083-94]
 gi|293446340|ref|ZP_06662762.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|187429717|gb|ACD08991.1| DNA-cytosine methyltransferase [Shigella boydii CDC 3083-94]
 gi|291323170|gb|EFE62598.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|320175451|gb|EFW50550.1| DNA-cytosine methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320184499|gb|EFW59303.1| DNA-cytosine methyltransferase [Shigella flexneri CDC 796-83]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|330911766|gb|EGH40276.1| DNA-cytosine methyltransferase [Escherichia coli AA86]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323962004|gb|EGB57603.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|320641809|gb|EFX11197.1| DNA cytosine methylase [Escherichia coli O157:H7 str. G5101]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAVEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|320182772|gb|EFW57655.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEDVSDEGAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|309795932|ref|ZP_07690345.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308120382|gb|EFO57644.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331653374|ref|ZP_08354379.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|331049472|gb|EGI21544.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|301029418|ref|ZP_07192512.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877722|gb|EFI85933.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 476

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|238917714|ref|YP_002931231.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
          27750]
 gi|238873074|gb|ACR72784.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
          27750]
          Length = 311

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+   F G+GG    L++ F     +  ++++ + Y+V+TY+ANF   ++ GDI +I  
Sbjct: 1  MKVVSFFSGLGG----LDKGFVDTGYDIIWANDFDKYAVQTYKANFGEHIVLGDINEIPL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPD D+L+ GFPCQPFS  G
Sbjct: 57 EEIPDCDILIGGFPCQPFSMMG 78


>gi|218554541|ref|YP_002387454.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|260868553|ref|YP_003234955.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|218361309|emb|CAQ98893.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|257764909|dbj|BAI36404.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|323180787|gb|EFZ66327.1| DNA-cytosine methyltransferase [Escherichia coli 1180]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|189096062|pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex
          With 13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS  G
Sbjct: 67 KTIPDHDILCAGFPCQAFSIQG 88


>gi|188494720|ref|ZP_03001990.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
 gi|188489919|gb|EDU65022.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|91211180|ref|YP_541166.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|117624099|ref|YP_853012.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218558817|ref|YP_002391730.1| DNA cytosine methylase [Escherichia coli S88]
 gi|91072754|gb|ABE07635.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|115513223|gb|ABJ01298.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218365586|emb|CAR03313.1| DNA cytosine methylase [Escherichia coli S88]
 gi|294492656|gb|ADE91412.1| DNA-cytosine methyltransferase [Escherichia coli IHE3034]
 gi|307626564|gb|ADN70868.1| DNA cytosine methylase [Escherichia coli UM146]
 gi|323952452|gb|EGB48325.1| DNA-cytosine methyltransferase [Escherichia coli H252]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|24113334|ref|NP_707844.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30063396|ref|NP_837567.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110805927|ref|YP_689447.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|24052347|gb|AAN43551.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30041648|gb|AAP17376.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110615475|gb|ABF04142.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|281601397|gb|ADA74381.1| Cytosine-specific methyltransferase [Shigella flexneri 2002017]
 gi|313650184|gb|EFS14597.1| DNA-cytosine methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|332756118|gb|EGJ86471.1| DNA-cytosine methyltransferase [Shigella flexneri 4343-70]
 gi|332757312|gb|EGJ87649.1| DNA-cytosine methyltransferase [Shigella flexneri 2747-71]
 gi|332757528|gb|EGJ87863.1| DNA-cytosine methyltransferase [Shigella flexneri K-671]
 gi|332766700|gb|EGJ96904.1| cytosine-specific methyltransferase [Shigella flexneri 2930-71]
 gi|333003060|gb|EGK22614.1| DNA-cytosine methyltransferase [Shigella flexneri VA-6]
 gi|333003307|gb|EGK22853.1| DNA-cytosine methyltransferase [Shigella flexneri K-218]
 gi|333004068|gb|EGK23602.1| DNA-cytosine methyltransferase [Shigella flexneri K-272]
 gi|333017687|gb|EGK36999.1| DNA-cytosine methyltransferase [Shigella flexneri K-304]
 gi|333017841|gb|EGK37148.1| DNA-cytosine methyltransferase [Shigella flexneri K-227]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|26248232|ref|NP_754272.1| DNA cytosine methylase [Escherichia coli CFT073]
 gi|227885611|ref|ZP_04003416.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|237705920|ref|ZP_04536401.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|331647554|ref|ZP_08348646.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|26108636|gb|AAN80839.1|AE016762_92 DNA-cytosine methyltransferase [Escherichia coli CFT073]
 gi|226900677|gb|EEH86936.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837184|gb|EEJ47650.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|281179022|dbj|BAI55352.1| DNA cytosine methylase [Escherichia coli SE15]
 gi|307553973|gb|ADN46748.1| DNA cytosine methylase [Escherichia coli ABU 83972]
 gi|320194327|gb|EFW68958.1| DNA-cytosine methyltransferase [Escherichia coli WV_060327]
 gi|323956356|gb|EGB52099.1| DNA-cytosine methyltransferase [Escherichia coli H263]
 gi|324005878|gb|EGB75097.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331043278|gb|EGI15416.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|15802395|ref|NP_288421.1| DNA cytosine methylase [Escherichia coli O157:H7 EDL933]
 gi|15831953|ref|NP_310726.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|16129907|ref|NP_416470.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108792|ref|AP_002572.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. W3110]
 gi|168752207|ref|ZP_02777229.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758275|ref|ZP_02783282.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168771615|ref|ZP_02796622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777717|ref|ZP_02802724.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783359|ref|ZP_02808366.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789321|ref|ZP_02814328.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801737|ref|ZP_02826744.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|170081604|ref|YP_001730924.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|195939267|ref|ZP_03084649.1| DNA cytosine methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810340|ref|ZP_03252216.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816602|ref|ZP_03257722.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821263|ref|ZP_03261583.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400193|ref|YP_002271076.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919382|ref|YP_002293466.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217328629|ref|ZP_03444710.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218689956|ref|YP_002398168.1| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238901165|ref|YP_002926961.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253773091|ref|YP_003035922.1| DNA cytosine methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254793611|ref|YP_003078448.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|256017846|ref|ZP_05431711.1| DNA cytosine methylase [Shigella sp. D9]
 gi|261227545|ref|ZP_05941826.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254631|ref|ZP_05947164.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293415271|ref|ZP_06657914.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300818618|ref|ZP_07098826.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300920181|ref|ZP_07136630.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|301327749|ref|ZP_07220953.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301644580|ref|ZP_07244570.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307312454|ref|ZP_07592088.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|312973821|ref|ZP_07787993.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|332278872|ref|ZP_08391285.1| DNA cytosine methylase [Shigella sp. D9]
 gi|83305674|sp|P0AEE0|DCM_ECO57 RecName: Full=DNA-cytosine methyltransferase
 gi|83305675|sp|P0AED9|DCM_ECOLI RecName: Full=DNA-cytosine methyltransferase; AltName:
           Full=M.EcoDcm
 gi|12516070|gb|AAG56975.1|AE005418_3 DNA cytosine methylase [Escherichia coli O157:H7 str. EDL933]
 gi|41239|emb|CAA31705.1| unnamed protein product [Escherichia coli K-12]
 gi|145719|gb|AAA03723.1| DNA cytosine methylase [Escherichia coli]
 gi|1736630|dbj|BAA15788.1| DNA cytosine methylase [Escherichia coli str. K12 substr. W3110]
 gi|1788271|gb|AAC75027.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362167|dbj|BAB36122.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|169889439|gb|ACB03146.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|187767102|gb|EDU30946.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013903|gb|EDU52025.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999305|gb|EDU68291.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354901|gb|EDU73320.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359668|gb|EDU78087.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371047|gb|EDU89463.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376137|gb|EDU94553.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|208724856|gb|EDZ74563.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730945|gb|EDZ79634.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741386|gb|EDZ89068.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161593|gb|ACI39026.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766668|gb|ACI81646.1| DNA cytosine methylase [Escherichia coli]
 gi|209766670|gb|ACI81647.1| DNA cytosine methylase [Escherichia coli]
 gi|209766672|gb|ACI81648.1| DNA cytosine methylase [Escherichia coli]
 gi|209766676|gb|ACI81650.1| DNA cytosine methylase [Escherichia coli]
 gi|209912641|dbj|BAG77715.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217317976|gb|EEC26403.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218427520|emb|CAR08415.2| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238860813|gb|ACR62811.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253324135|gb|ACT28737.1| DNA-cytosine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254593011|gb|ACT72372.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|260448927|gb|ACX39349.1| DNA-cytosine methyltransferase [Escherichia coli DH1]
 gi|291432919|gb|EFF05898.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300412803|gb|EFJ96113.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300528790|gb|EFK49852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300845711|gb|EFK73471.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301077088|gb|EFK91894.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|306907625|gb|EFN38128.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|310332416|gb|EFP99651.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|315061260|gb|ADT75587.1| DNA cytosine methylase [Escherichia coli W]
 gi|315136597|dbj|BAJ43756.1| DNA cytosine methylase [Escherichia coli DH1]
 gi|320191934|gb|EFW66581.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198651|gb|EFW73251.1| DNA-cytosine methyltransferase [Escherichia coli EC4100B]
 gi|320647167|gb|EFX16000.1| DNA cytosine methylase [Escherichia coli O157:H- str. 493-89]
 gi|320652452|gb|EFX20750.1| DNA cytosine methylase [Escherichia coli O157:H- str. H 2687]
 gi|320658054|gb|EFX25816.1| DNA cytosine methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658625|gb|EFX26319.1| DNA cytosine methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668523|gb|EFX35350.1| DNA cytosine methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323174657|gb|EFZ60277.1| DNA-cytosine methyltransferase [Escherichia coli LT-68]
 gi|323183944|gb|EFZ69331.1| DNA-cytosine methyltransferase [Escherichia coli 1357]
 gi|323378163|gb|ADX50431.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
 gi|323948336|gb|EGB44323.1| DNA-cytosine methyltransferase [Escherichia coli H120]
 gi|326342371|gb|EGD66152.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1044]
 gi|326344875|gb|EGD68622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|332101224|gb|EGJ04570.1| DNA cytosine methylase [Shigella sp. D9]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|191169235|ref|ZP_03030988.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
 gi|190900713|gb|EDV60509.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|110642066|ref|YP_669796.1| DNA cytosine methylase [Escherichia coli 536]
 gi|191173268|ref|ZP_03034798.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|110343658|gb|ABG69895.1| DNA-cytosine methyltransferase [Escherichia coli 536]
 gi|190906385|gb|EDV65994.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|222033699|emb|CAP76440.1| DNA-cytosine methyltransferase [Escherichia coli LF82]
 gi|312946553|gb|ADR27380.1| DNA cytosine methylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|324013473|gb|EGB82692.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|193071315|ref|ZP_03052233.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331683510|ref|ZP_08384111.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|192955357|gb|EDV85842.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331079725|gb|EGI50922.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|149369548|ref|ZP_01889400.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
 gi|149356975|gb|EDM45530.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
          Length = 421

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
            K  DLF GIGG R+ L+      N+E  C F+SE + YS +TY+ANF   + FGDI + 
Sbjct: 97  FKFIDLFAGIGGFRMALQ------NLEGKCVFTSEWDKYSKQTYKANF-GEIPFGDITRP 149

Query: 60  KTQD-IPDH-DVLLAGFPCQPFSQAG 83
           +T+  IPD+ DVL AGFPCQ FS AG
Sbjct: 150 QTKSYIPDNFDVLCAGFPCQAFSIAG 175


>gi|331091354|ref|ZP_08340194.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404515|gb|EGG84059.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 391

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG      Q  ++   EC F+SEI+ Y+++TY+ N+       +I  +  
Sbjct: 5  FKFIDLFAGIGG----FHQAMHNLGGECVFASEIDKYAIETYKTNYGVDAGI-NIRDVHE 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+HDVL AGFPCQ FS+AG
Sbjct: 60 EDIPEHDVLCAGFPCQAFSKAG 81


>gi|306814216|ref|ZP_07448382.1| DNA cytosine methylase [Escherichia coli NC101]
 gi|305852375|gb|EFM52826.1| DNA cytosine methylase [Escherichia coli NC101]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300904853|ref|ZP_07122678.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301304244|ref|ZP_07210359.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300403236|gb|EFJ86774.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300840501|gb|EFK68261.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315257206|gb|EFU37174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|301018179|ref|ZP_07182696.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300399832|gb|EFJ83370.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|260855934|ref|YP_003229825.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300822269|ref|ZP_07102410.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|257754583|dbj|BAI26085.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300525152|gb|EFK46221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|309702249|emb|CBJ01566.1| DNA-cytosine methyltransferase [Escherichia coli ETEC H10407]
 gi|323937230|gb|EGB33510.1| DNA-cytosine methyltransferase [Escherichia coli E1520]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|215487159|ref|YP_002329590.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967158|ref|ZP_07781376.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
 gi|215265231|emb|CAS09622.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312288622|gb|EFR16524.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|170681403|ref|YP_001743285.1| DNA cytosine methylase [Escherichia coli SMS-3-5]
 gi|170519121|gb|ACB17299.1| DNA-cytosine methyltransferase [Escherichia coli SMS-3-5]
 gi|324119009|gb|EGC12898.1| DNA-cytosine methyltransferase [Escherichia coli E1167]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|193066646|ref|ZP_03047681.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|260844359|ref|YP_003222137.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
 gi|192925721|gb|EDV80380.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|257759506|dbj|BAI31003.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|157161430|ref|YP_001458748.1| DNA cytosine methylase [Escherichia coli HS]
 gi|157067110|gb|ABV06365.1| DNA-cytosine methyltransferase [Escherichia coli HS]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|218705454|ref|YP_002412973.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|293405443|ref|ZP_06649435.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298381087|ref|ZP_06990686.1| DNA cytosine methylase [Escherichia coli FVEC1302]
 gi|218432551|emb|CAR13444.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|291427651|gb|EFF00678.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298278529|gb|EFI20043.1| DNA cytosine methylase [Escherichia coli FVEC1302]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|30019096|ref|NP_830727.1| Type II restriction-modification system methylation subunit
          [Bacillus cereus ATCC 14579]
 gi|29894639|gb|AAP07928.1| Type II restriction-modification system methylation subunit
          [Bacillus cereus ATCC 14579]
          Length = 373

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF G GG+ L LEQ       E  ++++++ ++V+ Y+ N    ++ GDI KI  
Sbjct: 18 LKVVSLFSGCGGLDLGLEQA----GFEILWANDVDKHAVEIYKHNI-GKIVEGDITKISE 72

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  DVL AGFPCQPFS AG
Sbjct: 73 EEIPSCDVLTAGFPCQPFSSAG 94


>gi|323186716|gb|EFZ72038.1| DNA-cytosine methyltransferase [Escherichia coli RN587/1]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323158561|gb|EFZ44575.1| DNA-cytosine methyltransferase [Escherichia coli E128010]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|194433657|ref|ZP_03065933.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|194418086|gb|EDX34179.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|332095525|gb|EGJ00541.1| DNA-cytosine methyltransferase [Shigella dysenteriae 155-74]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEGAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|194430436|ref|ZP_03062919.1| DNA-cytosine methyltransferase [Escherichia coli B171]
 gi|194411515|gb|EDX27854.1| DNA-cytosine methyltransferase [Escherichia coli B171]
          Length = 472

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|218695565|ref|YP_002403232.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|256022383|ref|ZP_05436248.1| DNA cytosine methylase [Escherichia sp. 4_1_40B]
 gi|218352297|emb|CAU98056.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|323972739|gb|EGB67939.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
 gi|332343686|gb|AEE57020.1| DNA-cytosine methyltransferase [Escherichia coli UMNK88]
          Length = 472

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331671799|ref|ZP_08372595.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
 gi|331070788|gb|EGI42147.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
          Length = 474

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FG-DIA 57
            +  DLF GIGGIR    + F +   +C F+SE N  +V+TY+AN+ N  +   F  DI 
Sbjct: 96  FRFIDLFAGIGGIR----KGFENIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|282899236|ref|ZP_06307209.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195872|gb|EFA70796.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
          Length = 422

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M++  DLF GIGG+RL  +Q  +   VE  C  SSEI+  +V+TY+ NF +    GDI +
Sbjct: 1  MIRFIDLFAGIGGMRLGFQQACDVLGVEYECVLSSEIDKKAVETYKINFDDQPR-GDIRE 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    +P+ D +LAGFPCQPFS AG
Sbjct: 60 IDI--MPEFDFMLAGFPCQPFSYAG 82


>gi|307138628|ref|ZP_07497984.1| DNA cytosine methylase [Escherichia coli H736]
 gi|331642581|ref|ZP_08343716.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331039379|gb|EGI11599.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 472

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|294979850|pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
           Shigella Flexneri 2a Str. 301
          Length = 482

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 89  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 144

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 145 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 186


>gi|188533556|ref|YP_001907353.1| DNA cytosine methylase [Erwinia tasmaniensis Et1/99]
 gi|188028598|emb|CAO96460.1| DNA-cytosine methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 469

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------P 48
            +  DLF GIGGIR   E        +C F+SE N +SV+TY+AN+              
Sbjct: 95  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHSVRTYKANWYCDETQHRFNQDIR 150

Query: 49  NTLIFGD-------IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  + GD         +   Q IPDHDVLLAGFPCQPFS AG
Sbjct: 151 DVTLSGDPQVDDREAYQHIQQQIPDHDVLLAGFPCQPFSLAG 192


>gi|256822924|ref|YP_003146887.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796463|gb|ACV27119.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
          Length = 419

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGGIRL     F      C FSSE    +  TY+ NF     FGDI  + +++IP
Sbjct: 101 DLFAGIGGIRLG----FQKYGGACVFSSEFEKAAQNTYKENF-GEHPFGDITTVPSENIP 155

Query: 66  DHDVLLAGFPCQPFSQAG 83
            HD+LL GFPCQ FS AG
Sbjct: 156 KHDILLGGFPCQAFSVAG 173


>gi|323968376|gb|EGB63783.1| DNA-cytosine methyltransferase [Escherichia coli M863]
 gi|327253092|gb|EGE64746.1| DNA-cytosine methyltransferase [Escherichia coli STEC_7v]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF----- 53
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F     
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANYYCDPAVHHFNEDIR 142

Query: 54  ----------GDIAKIK--TQDIPDHDVLLAGFPCQPFSQAG 83
                     GD A  +   Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGIGDDAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323977859|gb|EGB72945.1| DNA-cytosine methyltransferase [Escherichia coli TW10509]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF----- 53
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F     
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANYYCDPAVHHFNEDIR 142

Query: 54  ----------GDIAKIK--TQDIPDHDVLLAGFPCQPFSQAG 83
                     GD A  +   Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGIGDDAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|224418923|ref|ZP_03656929.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|253827874|ref|ZP_04870759.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|313142438|ref|ZP_07804631.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|253511280|gb|EES89939.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|313131469|gb|EFR49086.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
          Length = 328

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGGIR    + F      C FSSEI+ ++ +TY+AN+      GDI KI+  DIP
Sbjct: 27 DLFAGIGGIR----RGFEIEGGTCVFSSEIDKFACQTYEANWGEKPS-GDITKIEACDIP 81

Query: 66 DHDVLLAGFPCQPFSQAG 83
            D+LL GFPCQ FS AG
Sbjct: 82 KFDILLGGFPCQAFSIAG 99


>gi|167035739|ref|YP_001670970.1| DNA cytosine methylase [Pseudomonas putida GB-1]
 gi|166862227|gb|ABZ00635.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
          Length = 447

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 51/98 (52%), Gaps = 24/98 (24%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGD-IAKIKT 61
           DLF GIGGIR   EQ        C F+SE N  +V+TY+AN    P    + D I K+  
Sbjct: 80  DLFAGIGGIRRGFEQ----HGGRCVFTSEWNDQAVRTYKANHYSDPEHHRYNDDIRKVTL 135

Query: 62  QD----------------IPDHDVLLAGFPCQPFSQAG 83
            D                IPDHDVLLAGFPCQPFS AG
Sbjct: 136 SDNDDVSEQDVIASIHRQIPDHDVLLAGFPCQPFSIAG 173


>gi|322383485|ref|ZP_08057261.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321152224|gb|EFX45054.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 425

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M    +LF GIGG R  L+Q        C F+SEI+ ++  +Y+A +     + GDI KI
Sbjct: 1  MFTYVELFAGIGGFRSALDQLGG----ICTFASEIDKFATISYRAMYDGAPELHGDITKI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +D+P+HD+L+ GFPCQ FS AG
Sbjct: 57 DAKDVPEHDLLVGGFPCQAFSVAG 80


>gi|56751653|ref|YP_172354.1| hypothetical protein syc1644_d [Synechococcus elongatus PCC 6301]
 gi|81301269|ref|YP_401477.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
 gi|56686612|dbj|BAD79834.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170150|gb|ABB58490.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 424

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 10/84 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           DLF GIGG R+  E+       +C F+SE +  + KTY+ANF      I GDI +I  + 
Sbjct: 75  DLFAGIGGTRMGFERAGG----KCVFTSEWDTSAQKTYRANFSVDEHPIIGDIHEITVEG 130

Query: 64  ----IPDHDVLLAGFPCQPFSQAG 83
               +P+HDVL+AGFPCQPFS AG
Sbjct: 131 KWDLLPEHDVLVAGFPCQPFSIAG 154


>gi|312281368|ref|YP_004022731.1| DNA-cytosine methyltransferase [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181897|gb|ADQ42066.1| DNA-cytosine methyltransferase [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 319

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G+GGI L     F     +  ++++I+ Y+  TY++NFP   L+ GDI  I 
Sbjct: 4  IRVVSLFSGVGGICL----AFKQAGFDVIWANDIDKYACITYRSNFPTVELVEGDIQSID 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + +IP+ D++ AGFPCQPFS AG
Sbjct: 60 SNNIPECDIITAGFPCQPFSIAG 82


>gi|291283137|ref|YP_003499955.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209766674|gb|ACI81649.1| DNA cytosine methylase [Escherichia coli]
 gi|290763010|gb|ADD56971.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 472

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF G+GGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGVGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331645413|ref|ZP_08346517.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
 gi|331045575|gb|EGI17701.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
          Length = 474

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N  +   F  DI 
Sbjct: 96  FRFIDLFAGIGGIR----KGFESIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|167761084|ref|ZP_02433211.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC
          35704]
 gi|167661318|gb|EDS05448.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC
          35704]
          Length = 405

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          DLF GIGG      Q  +     C F+SEI+ Y ++TYQ N+  ++ I  DI  +  +DI
Sbjct: 27 DLFSGIGG----FHQAMSSLGGRCVFASEIDKYCIETYQENYGMDSGI--DIRNVDEKDI 80

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P HDVL AGFPCQ FS+AG
Sbjct: 81 PPHDVLCAGFPCQAFSKAG 99


>gi|325499566|gb|EGC97425.1| DNA cytosine methylase [Escherichia fergusonii ECD227]
          Length = 473

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 151

Query: 50  --TLIFGDIAKIKT------QDIPDHDVLLAGFPCQPFSQAG 83
             TL   D    K       + IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 193


>gi|324112381|gb|EGC06359.1| DNA-cytosine methyltransferase [Escherichia fergusonii B253]
          Length = 473

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 151

Query: 50  --TLIFGDIAKIKT------QDIPDHDVLLAGFPCQPFSQAG 83
             TL   D    K       + IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 193


>gi|323191533|gb|EFZ76794.1| modification methylase EcoRII [Escherichia coli RN587/1]
          Length = 474

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N  +   F  DI 
Sbjct: 96  FRFIDLFAGIGGIR----KGFESIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|296538000|gb|ADH30019.1| EcoRII cytosine methylase [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|160431610|ref|YP_001551777.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin]
 gi|298206539|ref|YP_003717476.1| EcoRII modification enzyme [Escherichia coli]
 gi|159885479|dbj|BAF93082.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|296537944|gb|ADH29964.1| EcoRII modification enzyme [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|113706802|ref|YP_724464.1| DNA cytosine methylase [Escherichia coli]
 gi|190576899|ref|YP_001966231.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|194433606|ref|ZP_03065883.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|209901141|ref|YP_002286923.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|209901236|ref|YP_002287017.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|215528089|ref|YP_002332862.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|302141639|ref|YP_003813098.1| EcoRII methylase [Klebsiella pneumoniae]
 gi|127448|sp|P05101|MTE2_ECOLX RecName: Full=Modification methylase EcoRII; Short=M.EcoRII;
           AltName: Full=Cytosine-specific methyltransferase EcoRII
 gi|41317|emb|CAA28725.1| unnamed protein product [Escherichia coli HB101]
 gi|109390538|gb|ABG33840.1| EcoRII modification enzyme [Escherichia coli]
 gi|110264483|gb|ABG56846.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|165928612|gb|ABY74380.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|194418198|gb|EDX34290.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|197092209|gb|ACH42172.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|209574187|gb|ACI63075.1| modification methylase [Klebsiella pneumoniae]
 gi|209574298|gb|ACI63184.1| modification methylase [Klebsiella pneumoniae]
 gi|296033904|gb|ADG84867.1| EcoRII methylase [Klebsiella pneumoniae]
          Length = 477

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|300724477|ref|YP_003713798.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297631015|emb|CBJ91699.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+   P   +F  DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEEIGG----QCVFTSEWNKDAVRTYKANWYCDPEEHVFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  ++IP+HDVLLAGFPCQPFS AG
Sbjct: 152 DITLSHDISVSDKEAYQNIDREIPNHDVLLAGFPCQPFSLAG 193


>gi|297622183|ref|YP_003675732.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
 gi|296492002|gb|ADH29504.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
          Length = 491

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 110 FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 165

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 207


>gi|218551294|ref|YP_002385086.1| DNA cytosine methylase [Escherichia fergusonii ATCC 35469]
 gi|218358836|emb|CAQ91493.1| DNA modification methylase [Escherichia fergusonii ATCC 35469]
          Length = 485

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 108 FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 163

Query: 50  --TLIFGDIAKIKT------QDIPDHDVLLAGFPCQPFSQAG 83
             TL   D    K       + IPDHDVLLAGFPCQPFS AG
Sbjct: 164 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 205


>gi|157368818|ref|YP_001476807.1| DNA cytosine methylase [Serratia proteamaculans 568]
 gi|157320582|gb|ABV39679.1| DNA-cytosine methyltransferase [Serratia proteamaculans 568]
          Length = 491

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+   P    F  DI 
Sbjct: 112 FRFIDLFAGIGGIRKGFEEIGG----QCVFTSEWNKEAVRTYKANWYCDPAHHKFNSDIR 167

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  ++IPDHDVLLAGFPCQPFS AG
Sbjct: 168 EITLSENDDISDQEAYKNIDKEIPDHDVLLAGFPCQPFSLAG 209


>gi|133756232|ref|YP_001096382.1| DNA cytosine methylase [Escherichia coli]
 gi|110084067|gb|ABG49221.1| hypothetical protein [Escherichia coli]
          Length = 566

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 185 FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 240

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 241 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 282


>gi|313158099|gb|EFR57504.1| putative DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 431

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF G+GG RL ++    H    C FSSE N Y+ +TY ANF   + FGDI K + ++ I
Sbjct: 114 DLFAGMGGFRLAMQ----HYGGRCVFSSEWNKYAQQTYLANF-GEVPFGDITKDEIKEYI 168

Query: 65  PD-HDVLLAGFPCQPFSQAG 83
           PD  D+L AGFPCQPFS AG
Sbjct: 169 PDGFDILCAGFPCQPFSIAG 188


>gi|303328045|ref|ZP_07358484.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
 gi|302861871|gb|EFL84806.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
          Length = 417

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G+GG  L L +       +C F+SEI+      Y+ NF    + GDI K+ 
Sbjct: 6  MKTFIDLFAGLGGFHLGLSRA----GYQCVFASEIDGDLASLYERNFGLRPV-GDIRKVD 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P HDVL AGFPCQPFS AG
Sbjct: 61 VNHVPKHDVLCAGFPCQPFSSAG 83


>gi|283785730|ref|YP_003365595.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
 gi|282949184|emb|CBG88792.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
          Length = 477

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P +  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYYCDPASHRFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHREGISDRQAAEHIRQHVPQHDVLLAGFPCQPFSLAG 189


>gi|37524351|ref|NP_927695.1| DNA cytosine methylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783775|emb|CAE12633.1| DNA-cytosine methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 478

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 24/101 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIAK 58
           +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+   P +  F  DI +
Sbjct: 97  RFIDLFAGIGGIRKGFEEI----GGQCVFTSEWNKDAVRTYKANWYCDPESHKFNSDIRE 152

Query: 59  IK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           I                  ++IPDHDVLLAGFPCQPFS AG
Sbjct: 153 ITLSENSKIDEKEAYKNIDKEIPDHDVLLAGFPCQPFSLAG 193


>gi|292670064|ref|ZP_06603490.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
 gi|292648252|gb|EFF66224.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
          Length = 377

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           DLF GIGGIR   +  F    +   F SE + ++ KTY+AN+ ++  I GDI KI  ++I
Sbjct: 35  DLFAGIGGIRKGFDNAFGDA-IRTVFVSEWDEHAQKTYRANYNDSFEIAGDITKIAAEEI 93

Query: 65  PDHDVLLAGFPCQPFSQAG 83
              D+ LAGFPCQ FS AG
Sbjct: 94  APFDICLAGFPCQAFSMAG 112


>gi|296103580|ref|YP_003613726.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058039|gb|ADF62777.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 471

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 86  FRFIDLFAGIGGIR----HGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPDAHQFNADIR 141

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q+IP HDVLLAGFPCQPFS AG
Sbjct: 142 DVTLSHKSGVSDEEAAEHIRQNIPAHDVLLAGFPCQPFSLAG 183


>gi|300951590|ref|ZP_07165422.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300449174|gb|EFK12794.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 478

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 93  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 149 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 190


>gi|300956520|ref|ZP_07168803.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300316661|gb|EFJ66445.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 477

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 189


>gi|291463698|pdb|3LX6|A Chain A, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
 gi|291463699|pdb|3LX6|B Chain B, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
          Length = 410

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 27  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 82

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 83  DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 124


>gi|317009733|gb|ADU80313.1| type II DNA modification enzyme [Helicobacter pylori India7]
          Length = 318

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLISGFPCQAFSING 81


>gi|53714966|ref|YP_100958.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
 gi|52217831|dbj|BAD50424.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
          Length = 431

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF   + FGDI K  T+  I
Sbjct: 117 DLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANF-GEMPFGDITKEMTKSYI 171

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P + DVL AGFPCQPFS AG
Sbjct: 172 PRNFDVLCAGFPCQPFSIAG 191


>gi|188527903|ref|YP_001910590.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|188144143|gb|ACD48560.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|308063905|gb|ADO05792.1| type II DNA modification enzyme [Helicobacter pylori Sat464]
          Length = 320

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +IK
Sbjct: 5  ILTFMDFCSGIGGGRLGLEQC----RLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIK 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 61 PNDLPDFDALISGFPCQAFSING 83


>gi|170019707|ref|YP_001724661.1| DNA cytosine methylase [Escherichia coli ATCC 8739]
 gi|169754635|gb|ACA77334.1| DNA-cytosine methyltransferase [Escherichia coli ATCC 8739]
 gi|323940380|gb|EGB36571.1| DNA-cytosine methyltransferase [Escherichia coli E482]
 gi|332093084|gb|EGI98148.1| DNA-cytosine methyltransferase [Shigella boydii 5216-82]
          Length = 472

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 184


>gi|324018843|gb|EGB88062.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 472

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVNDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 184


>gi|331084584|ref|ZP_08333682.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400654|gb|EGG80261.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 324

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K    F G+GGI    E T   + V   +++EI+ Y  +T++ NF   +   DI ++K
Sbjct: 1  MFKCASFFAGVGGIDYGFESTGVFKTV---YANEIDSYPAQTFELNFDVKVDVRDIHEVK 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +++IPD D++LAGFPCQ FS AG
Sbjct: 58 SEEIPDFDIMLAGFPCQAFSIAG 80


>gi|209527672|ref|ZP_03276170.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491900|gb|EDZ92257.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 429

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGG+RL  EQ         +C  SSEI+  + + YQANF  T   GDI  I
Sbjct: 4  VKFIDLFAGIGGLRLGFEQALESLGCIPDCLLSSEIDGDARQVYQANFSETPQ-GDIQTI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +P H VLLAGFPCQ FS AG
Sbjct: 63 PS--LPPHHVLLAGFPCQSFSYAG 84


>gi|168234623|ref|ZP_02659681.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736513|ref|YP_002117411.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712015|gb|ACF91236.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291717|gb|EDY31067.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 474

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 50  -TLIFGD--IAKIKT-----QDIPDHDVLLAGFPCQPFSQAG 83
              + G+  I++ K      Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|161617789|ref|YP_001591754.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161367153|gb|ABX70921.1| hypothetical protein SPAB_05653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 474

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 50  -TLIFGD--IAKIKT-----QDIPDHDVLLAGFPCQPFSQAG 83
              + G+  I++ K      Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|323650448|gb|ADX97301.1| M.Fnu4HI [Fusobacterium nucleatum]
          Length = 351

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT + + V   + +E +  + +T++ NF N L   DI ++ 
Sbjct: 1  MYKVASLFAGVGGIDLGFEQTGHFKTV---WXNEYDDKARETFRCNFSNKLNENDIREVD 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q+IPD D+LL+GFPC  FS AG
Sbjct: 58 VQEIPDIDILLSGFPCTSFSVAG 80


>gi|161505003|ref|YP_001572115.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866350|gb|ABX22973.1| hypothetical protein SARI_03133 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 474

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 50  -TLIFGD--IAKIKT-----QDIPDHDVLLAGFPCQPFSQAG 83
              + G+  I++ K      Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|48093754|gb|AAT40239.1| Eco128I DNA methylase [Escherichia coli]
          Length = 332

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 15  FRFIDLFAGIGGIR----KGFETIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 70

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D  ++   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 71  EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 112


>gi|166366204|ref|YP_001658477.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
 gi|166088577|dbj|BAG03285.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
          Length = 346

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 18 LTFADFYAGIGGFRLGLEQI----GWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 73

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 74 SLLPDFEVFCGGFPCQPFSRAG 95


>gi|159029905|emb|CAO90959.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 346

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 18 LTFADFYAGIGGFRLGLEQI----GWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 73

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 74 SLLPDFEVFCGGFPCQPFSRAG 95


>gi|294646710|ref|ZP_06724334.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294807186|ref|ZP_06766001.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|292637950|gb|EFF56344.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294445609|gb|EFG14261.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 445

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF   + FGDI K  T+  I
Sbjct: 117 DLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANF-GEMPFGDITKEVTKSYI 171

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P + D+L AGFPCQPFS AG
Sbjct: 172 PQYFDILCAGFPCQPFSIAG 191


>gi|329298618|ref|ZP_08255954.1| DNA cytosine methylase [Plautia stali symbiont]
          Length = 465

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 51/101 (50%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR   EQ       +C F+SE N  +V+TY+AN    P    F    +
Sbjct: 91  FQFIDLFAGIGGIRRGFEQIGG----QCVFTSEWNKEAVRTYKANHYSDPAQHQFNSDIR 146

Query: 59  IKTQ----------------DIPDHDVLLAGFPCQPFSQAG 83
           + TQ                 IPDH VLLAGFPCQPFS AG
Sbjct: 147 LITQPAGLPDEQAIYQHIDQTIPDHQVLLAGFPCQPFSLAG 187


>gi|284050345|ref|ZP_06380555.1| DNA (cytosine-5-)-methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 429

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGG+RL  EQ  +      +C  SSEI+  + + YQANF  T   GDI  I
Sbjct: 4  VKFIDLFAGIGGLRLGFEQAVDSFGCIPDCLLSSEIDRDARQVYQANFSETPQ-GDIKTI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +P H +LLAGFPCQ FS AG
Sbjct: 63 SS--LPPHHILLAGFPCQSFSYAG 84


>gi|237713924|ref|ZP_04544405.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262409168|ref|ZP_06085712.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
 gi|229446080|gb|EEO51871.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262352915|gb|EEZ02011.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
          Length = 361

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF   + FGDI K  T+  I
Sbjct: 33  DLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANF-GEMPFGDITKEVTKSYI 87

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P + D+L AGFPCQPFS AG
Sbjct: 88  PQYFDILCAGFPCQPFSIAG 107


>gi|157147667|ref|YP_001454986.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157084872|gb|ABV14550.1| hypothetical protein CKO_03470 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 50  -TLIFGD--IAKIKT-----QDIPDHDVLLAGFPCQPFSQAG 83
              + G+  I++ K      Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|291569071|dbj|BAI91343.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 429

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGG+RL  EQ  +      +C  SSEI+  + + YQANF  T   GDI  I
Sbjct: 4  VKFIDLFAGIGGLRLGFEQAVDSFGCIPDCLLSSEIDRDARQVYQANFSETPQ-GDIKTI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +P H +LLAGFPCQ FS AG
Sbjct: 63 SS--LPPHHILLAGFPCQSFSYAG 84


>gi|254410261|ref|ZP_05024041.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183297|gb|EDX78281.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 384

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG R+  EQT      +C +S EI+P   + Y  NF +    GDI +I  
Sbjct: 4  IKFIDLFAGIGGFRIAFEQT----GYKCVYSCEIDPKCQEVYFNNFLDKPA-GDIREIDI 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPD DVL AGFPCQPFS  G
Sbjct: 59 NSIPDFDVLTAGFPCQPFSICG 80


>gi|313677762|ref|YP_004055758.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944460|gb|ADR23650.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 378

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          LK    FCG GG+ L L   FN+ N        E  ++++ + Y+ + Y +NF +  I  
Sbjct: 10 LKAASFFCGCGGMDLGLVGNFNYLNGNYSSLPFEIVYANDFDTYATEIYNSNFEHKCITK 69

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          DI  +   +IP+HD+LL GFPCQ FS
Sbjct: 70 DIKDVSMSEIPEHDILLGGFPCQSFS 95


>gi|218699478|ref|YP_002407107.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218369464|emb|CAR17229.1| DNA cytosine methylase [Escherichia coli IAI39]
          Length = 472

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR    + F     +C F+ E N ++V+TY+AN    P T  F +  +
Sbjct: 87  FRFIDLFAGIGGIR----RGFESIGGQCVFTREWNKHAVRTYKANHYCDPATHHFNEDTR 142

Query: 59  IKT-----------------QDIPDHDVLLAGFPCQPFSQAG 83
             T                 Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|172039424|ref|YP_001805925.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
 gi|171700878|gb|ACB53859.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
          Length = 729

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E+   H    C +S EIN +  + Y  NF   L   DI KI  
Sbjct: 6  LKFIDLFAGIGGFRLAFEKAGYH----CVYSCEINDHCRQVYYDNF-GELPDQDITKIIP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPD D+L AGFPCQPFS  G
Sbjct: 61 KNIPDFDILTAGFPCQPFSICG 82


>gi|319779706|ref|YP_004130619.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109730|gb|ADU92476.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 329

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLF GIGG R+ L+        +C FSSE + ++ +TY  NF N +   DI KI  
Sbjct: 12 LTFIDLFAGIGGFRVALQSL----GAKCVFSSEWDKFAKETYWLNF-NEIAHDDITKIDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+L AGFPCQ FS +G
Sbjct: 67 CTIPNHDILCAGFPCQAFSISG 88


>gi|322616984|gb|EFY13892.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618223|gb|EFY15115.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625894|gb|EFY22713.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626346|gb|EFY23156.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632761|gb|EFY29506.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639103|gb|EFY35796.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640419|gb|EFY37075.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647220|gb|EFY43719.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648528|gb|EFY44979.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655540|gb|EFY51848.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660318|gb|EFY56556.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662999|gb|EFY59206.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668184|gb|EFY64343.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674057|gb|EFY70151.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675591|gb|EFY71665.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682998|gb|EFY79014.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686692|gb|EFY82670.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195420|gb|EFZ80600.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198052|gb|EFZ83169.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204476|gb|EFZ89482.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207566|gb|EFZ92514.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210995|gb|EFZ95855.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217551|gb|EGA02270.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323226697|gb|EGA10894.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231573|gb|EGA15686.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236016|gb|EGA20095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240586|gb|EGA24629.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245478|gb|EGA29478.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247596|gb|EGA31547.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254424|gb|EGA38240.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257764|gb|EGA41444.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262129|gb|EGA45692.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266252|gb|EGA49742.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270729|gb|EGA54168.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|200390041|ref|ZP_03216652.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602486|gb|EDZ01032.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168239231|ref|ZP_02664289.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734985|ref|YP_002115026.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204931362|ref|ZP_03222061.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194710487|gb|ACF89708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288080|gb|EDY27467.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204319845|gb|EDZ05054.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|198242597|ref|YP_002215094.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937113|gb|ACH74446.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622842|gb|EGE29187.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|167552776|ref|ZP_02346527.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322616|gb|EDZ10455.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|161613440|ref|YP_001587405.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205352316|ref|YP_002226117.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856496|ref|YP_002243147.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|161362804|gb|ABX66572.1| hypothetical protein SPAB_01156 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205272097|emb|CAR36949.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708299|emb|CAR32602.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627365|gb|EGE33708.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|159795737|pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
          Observable Precatalytic Intermediates During Dna
          Cytosine Methylation
          Length = 327

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKPE-GDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFP Q FS +G
Sbjct: 67 KTIPDHDILCAGFPAQAFSISG 88


>gi|331643338|ref|ZP_08344469.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
 gi|331036809|gb|EGI09033.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
          Length = 491

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 110 FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 165

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D   +   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 207


>gi|323960520|gb|EGB56149.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 477

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D   +   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 193


>gi|307139342|ref|ZP_07498698.1| DNA cytosine methylase [Escherichia coli H736]
          Length = 477

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 96  FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 151

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D   +   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 193


>gi|218701133|ref|YP_002408762.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218371119|emb|CAR18947.1| Modification methylase EcoRII (M.EcoRII) (Cytosine-specific
           methyltransferase EcoRII) [Escherichia coli IAI39]
          Length = 491

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN+ N            
Sbjct: 110 FRFIDLFAGIGGIR----KGFEAIGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 165

Query: 50  TLIFGDIAKIKTQD--------IPDHDVLLAGFPCQPFSQAG 83
            +   D   +   D        +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 207


>gi|168259722|ref|ZP_02681695.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205351069|gb|EDZ37700.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168462467|ref|ZP_02696398.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443436|ref|YP_002041256.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|238912436|ref|ZP_04656273.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|194402099|gb|ACF62321.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195634356|gb|EDX52708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168234164|ref|ZP_02659222.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168821682|ref|ZP_02833682.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470868|ref|ZP_03076852.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263635|ref|ZP_03163709.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|194457232|gb|EDX46071.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197241890|gb|EDY24510.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331847|gb|EDZ18611.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341769|gb|EDZ28533.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085391|emb|CBY95172.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|56413096|ref|YP_150171.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362022|ref|YP_002141659.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127353|gb|AAV76859.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093499|emb|CAR58960.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 476

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|239627884|ref|ZP_04670915.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518030|gb|EEQ57896.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 325

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCGIGG R  LE         C FS + N  +  TYQ+N+ + +  GDI KI+ +DIP
Sbjct: 8  DLFCGIGGFRQALESV----GGTCVFSCDKNKNARLTYQSNYGD-MPDGDITKIEAKDIP 62

Query: 66 DHDVLLAGFPCQPFSQAG 83
            ++L AGFPCQPFS AG
Sbjct: 63 PFNILCAGFPCQPFSIAG 80


>gi|197251440|ref|YP_002146032.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215143|gb|ACH52540.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 476

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|16765328|ref|NP_460943.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993566|ref|ZP_02574660.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|16420526|gb|AAL20902.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205328427|gb|EDZ15191.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247157|emb|CBG24980.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993981|gb|ACY88866.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158505|emb|CBW18015.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912981|dbj|BAJ36955.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224636|gb|EFX49699.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130270|gb|ADX17700.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988880|gb|AEF07863.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|16760934|ref|NP_456551.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141374|ref|NP_804716.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213424982|ref|ZP_03357732.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|289829483|ref|ZP_06547095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25286126|pir||AH0754 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16503231|emb|CAD05739.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137001|gb|AAO68565.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 476

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168244842|ref|ZP_02669774.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449372|ref|YP_002046042.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407676|gb|ACF67895.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336375|gb|EDZ23139.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 476

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|224583511|ref|YP_002637309.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468038|gb|ACN45868.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 476

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|332673919|gb|AEE70736.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 83]
          Length = 319

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|146312197|ref|YP_001177271.1| DNA cytosine methylase [Enterobacter sp. 638]
 gi|145319073|gb|ABP61220.1| DNA-cytosine methyltransferase [Enterobacter sp. 638]
          Length = 471

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P+T  F +  +
Sbjct: 86  FRFVDLFAGIGGIR----HGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPHTHQFNEDIR 141

Query: 59  IKT-----------------QDIPDHDVLLAGFPCQPFSQAG 83
             T                 + IP HDVLLAGFPCQPFS AG
Sbjct: 142 DVTLSHKSGVTDAEAADHIRRTIPAHDVLLAGFPCQPFSLAG 183


>gi|62180565|ref|YP_216982.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128198|gb|AAX65901.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715041|gb|EFZ06612.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 476

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|315587009|gb|ADU41390.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 35A]
          Length = 313

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           DVL++GFPCQ FS  G
Sbjct: 59 FDVLISGFPCQAFSING 75


>gi|159025987|emb|CAO87894.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 329

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 1  MTFADFYAGIGGFRLGLEQI----GWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 57 SLLPDFEVFCGGFPCQPFSRAG 78


>gi|262043463|ref|ZP_06016586.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039205|gb|EEW40353.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 477

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|238895488|ref|YP_002920223.1| DNA cytosine methylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330000908|ref|ZP_08303852.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238547805|dbj|BAH64156.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537840|gb|EGF64032.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 477

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|152970972|ref|YP_001336081.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955821|gb|ABR77851.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 477

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|314055098|ref|YP_004063436.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
 gi|313574989|emb|CBI70002.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
          Length = 315

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +  DLF G G     LE T  +   EC F+++ +  S + Y  N  +T + GD+  I  +
Sbjct: 4  RFIDLFAGTGAFTYALENTGKY---ECVFANDFDKSSKEIYTNNHDSTFVLGDLNDILVE 60

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD+L  GFPCQPFS AG
Sbjct: 61 DIPEHDLLCGGFPCQPFSIAG 81


>gi|310767946|gb|ADP12896.1| DNA cytosine methylase [Erwinia sp. Ejp617]
          Length = 467

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGKPEITDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 190


>gi|292488627|ref|YP_003531511.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|292899788|ref|YP_003539157.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291199636|emb|CBJ46755.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291554058|emb|CBA21160.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|312172770|emb|CBX81026.1| DNA cytosine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 469

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 95  FRFIDLFAGIGGIRSGFEAIGG----QCVFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 150

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 151 DVTLSGKPEISDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 192


>gi|317480905|ref|ZP_07939986.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902990|gb|EFV24863.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
          Length = 441

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG  L LE+       EC F+SEI       Y+ N    +  GDI ++  
Sbjct: 4  LKFIDLFAGLGGFHLALEKL----GCECVFASEIQTELRTLYERNH-GIICHGDINEVDI 58

Query: 62 Q-DIPDHDVLLAGFPCQPFSQAG 83
          + DIP+HD+L  GFPCQPFSQAG
Sbjct: 59 EKDIPEHDILCGGFPCQPFSQAG 81


>gi|317048624|ref|YP_004116272.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
 gi|316950241|gb|ADU69716.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
          Length = 467

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 50/101 (49%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR   EQ       +C F+SE N  +V+TY+AN    P    F    +
Sbjct: 93  FQFVDLFAGIGGIRRGFEQIGG----QCVFTSEWNKEAVRTYKANHYCDPQQHRFNSDIR 148

Query: 59  IKTQ----------------DIPDHDVLLAGFPCQPFSQAG 83
             TQ                 IPDH VLLAGFPCQPFS AG
Sbjct: 149 QVTQPAGLHDEQAIYQHIDRTIPDHQVLLAGFPCQPFSLAG 189


>gi|317177871|dbj|BAJ55660.1| Type II DNA modification enzyme [Helicobacter pylori F16]
          Length = 319

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|161502886|ref|YP_001569998.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864233|gb|ABX20856.1| hypothetical protein SARI_00944 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLEHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVGDDEAAEHIRQYIPQHDVLLAGFPCQPFSLAG 188


>gi|260886138|ref|ZP_05736578.2| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
 gi|260850757|gb|EEX70626.1| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
          Length = 427

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 7/83 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G+GG RL L++        C +SSE  P + +TY AN+   + FGDI K  T+
Sbjct: 106 KFIDLFAGVGGFRLALQRI----GGRCVYSSEFEPNAQQTYLANY-GEMPFGDITKESTK 160

Query: 63  D-IPDH-DVLLAGFPCQPFSQAG 83
             IPD+ DVL AGFPCQPFS +G
Sbjct: 161 SYIPDNFDVLCAGFPCQPFSISG 183


>gi|317012898|gb|ADU83506.1| type II DNA modification enzyme [Helicobacter pylori Lithuania75]
          Length = 318

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|317014507|gb|ADU81943.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          Gambia94/24]
          Length = 318

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLVSGFPCQAFSING 81


>gi|261838450|gb|ACX98216.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 318

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|208435018|ref|YP_002266684.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432947|gb|ACI27818.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 318

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALVSGFPCQAFSING 81


>gi|157412142|ref|YP_001481483.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|99867167|gb|ABF67812.1| cytosine methylase [Escherichia coli APEC O1]
          Length = 489

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 24/98 (24%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIAKIKT 61
           DLF GIGG+R      F+    +C F+SE N YS +TY+AN+    N   F  DI  I  
Sbjct: 110 DLFAGIGGLR----SGFDAIGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIRDITL 165

Query: 62  QD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                IPDHDVLLAGFPCQPFS AG
Sbjct: 166 SNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 203


>gi|322511205|gb|ADX06517.1| putative C-5 cytosine specific DNA methyltransferase [Organic Lake
           phycodnavirus]
          Length = 384

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK+ DLF G G   L  + T     V   F +++  +S   Y  NF + L   D+ ++K 
Sbjct: 72  LKMIDLFAGTGAFTLAFQLT---NAVNVVFGNDMVEHSKNIYDNNFNHKLTLKDLNEVKN 128

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIP HD+L  GFPCQPFS AG
Sbjct: 129 EDIPSHDILTGGFPCQPFSIAG 150


>gi|307637790|gb|ADN80240.1| DNA-cytosine methyl transferase [Helicobacter pylori 908]
 gi|325996388|gb|ADZ51793.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
 gi|325997976|gb|ADZ50184.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
          pylori 2017]
          Length = 318

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLVSGFPCQAFSING 81


>gi|218247578|ref|YP_002372949.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218168056|gb|ACK66793.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 727

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 46/84 (54%), Gaps = 11/84 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI 59
          K  DLF GIGG RL  EQ       +C +S EIN Y  K Y  NF   P+     D+ KI
Sbjct: 7  KFIDLFAGIGGFRLAFEQA----QYQCVYSCEINEYCQKVYYNNFDECPD----NDVTKI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P+ DVL AGFPCQPFS  G
Sbjct: 59 NPHTLPNFDVLTAGFPCQPFSICG 82


>gi|213650730|ref|ZP_03380783.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 405

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 20  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 75

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 76  DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 117


>gi|257061088|ref|YP_003138976.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256591254|gb|ACV02141.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 331

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL  EQ       +C +S EIN Y  K Y  NF +     D+ +I  
Sbjct: 6  FKFIDLFAGIGGFRLAFEQA----QYQCVYSCEINEYCQKVYYNNF-DECPDNDVTQINP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD DVL AGFPCQPFS  G
Sbjct: 61 DTLPDFDVLTAGFPCQPFSICG 82


>gi|226807724|ref|YP_002791420.1| Dcm [Enterobacter cloacae]
 gi|226810038|ref|YP_002791733.1| Dcm [Enterobacter cloacae]
 gi|226425951|gb|ACO54044.1| Dcm [Enterobacter cloacae]
 gi|226426265|gb|ACO54357.1| Dcm [Enterobacter cloacae]
          Length = 489

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 24/98 (24%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIAKIKT 61
           DLF GIGG+R      F+    +C F+SE N YS +TY+AN+    N   F  DI  I  
Sbjct: 110 DLFAGIGGLR----SGFDAIGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIRDITL 165

Query: 62  QD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                IPDHDVLLAGFPCQPFS AG
Sbjct: 166 SNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 203


>gi|261340425|ref|ZP_05968283.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317516|gb|EFC56454.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 477

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----HGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPDEHHFNADIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHKSGVTDEEAAHHIRQAIPAHDVLLAGFPCQPFSLAG 189


>gi|259908144|ref|YP_002648500.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224963766|emb|CAX55267.1| DNA-cytosine methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283478063|emb|CAY73979.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEAIGG----QCAFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGKPEITDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 190


>gi|317182374|dbj|BAJ60158.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 318

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----RLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|261839852|gb|ACX99617.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori 52]
          Length = 319

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHGALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|317180853|dbj|BAJ58639.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 312

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D L++GFPCQ FS  G
Sbjct: 59 FDALISGFPCQAFSING 75


>gi|308062397|gb|ADO04285.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
          Length = 318

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----RLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|317178577|dbj|BAJ56365.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 318

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----RLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|290508755|ref|ZP_06548126.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289778149|gb|EFD86146.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 477

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F +  +
Sbjct: 92  FRFVDLFAGIGGIR----NGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 59  IKT-----------------QDIPDHDVLLAGFPCQPFSQAG 83
             T                 + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 189


>gi|288934555|ref|YP_003438614.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
 gi|288889264|gb|ADC57582.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
          Length = 466

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F +  +
Sbjct: 81  FRFVDLFAGIGGIR----NGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 136

Query: 59  IKT-----------------QDIPDHDVLLAGFPCQPFSQAG 83
             T                 + IP HDVLLAGFPCQPFS AG
Sbjct: 137 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 178


>gi|206577074|ref|YP_002237693.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206566132|gb|ACI07908.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 477

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F +  +
Sbjct: 92  FRFVDLFAGIGGIR----NGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 59  IKT-----------------QDIPDHDVLLAGFPCQPFSQAG 83
             T                 + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 189


>gi|300727022|ref|ZP_07060441.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
          bryantii B14]
 gi|299775566|gb|EFI72157.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
          bryantii B14]
          Length = 446

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP-NTLIFGDIA 57
          M+   DLF G+GGIR+   Q  N   +E  C F+SEI   ++     NFP   +I  DI 
Sbjct: 1  MIDYIDLFAGLGGIRIGFTQAANELGLESRCVFTSEIKDSALCALNHNFPGENIIKRDIT 60

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          K+ + +IP  ++LL GFPCQ FS AG
Sbjct: 61 KVASDEIPHFNILLGGFPCQAFSFAG 86


>gi|213053466|ref|ZP_03346344.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 320

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|217034658|ref|ZP_03440063.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
 gi|216942866|gb|EEC22357.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
          Length = 312

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D L++GFPCQ FS  G
Sbjct: 59 FDALISGFPCQAFSING 75


>gi|300931174|ref|ZP_07146520.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300461007|gb|EFK24500.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
          Length = 477

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGI     + F     +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIC----RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|38347986|ref|NP_941235.1| DNA cytosine methylase [Serratia marcescens]
 gi|190410308|ref|YP_001965811.1| dcm [Klebsiella pneumoniae]
 gi|38259463|emb|CAE51691.1| DNA-cytosine methyltransferase [Serratia marcescens]
 gi|146151102|gb|ABQ02868.1| dcm [Klebsiella pneumoniae]
          Length = 475

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 52/98 (53%), Gaps = 24/98 (24%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIAKIKT 61
           DLF GIGG+R      F+    +C F+SE N YS +TY+AN+    N   F  DI  I  
Sbjct: 96  DLFAGIGGLR----SGFDAIGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIRDITL 151

Query: 62  QD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 SNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|311279100|ref|YP_003941331.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
 gi|308748295|gb|ADO48047.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
          Length = 492

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F D  +
Sbjct: 108 FRFIDLFAGIGGIR----HGFEAIGGQCVFTSEWNKHAVRTYKANWYCSPQDHQFNDDIR 163

Query: 59  IKTQD-----------------IPDHDVLLAGFPCQPFSQAG 83
             T                   IP HDVLLAGFPCQPFS AG
Sbjct: 164 SVTLSHQPNVTDGEAAEHIRGVIPQHDVLLAGFPCQPFSLAG 205


>gi|127420|sp|P19888|MTBA_BACAR RecName: Full=Modification methylase BanI; Short=M.BanI; AltName:
          Full=Cytosine-specific methyltransferase BanI
 gi|216242|dbj|BAA00613.1| BanI modification methylase [Aneurinibacillus aneurinilyticus]
          Length = 428

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH--RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR+  E+         EC  SSEI+  + +TY  NF      GDI +I
Sbjct: 3  IKFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEPQ-GDIHEI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           +   P+ D LLAGFPCQPFS AG
Sbjct: 62 TS--FPEFDFLLAGFPCQPFSYAG 83


>gi|109947180|ref|YP_664408.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis
          str. Sheeba]
 gi|109714401|emb|CAJ99409.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis
          str. Sheeba]
          Length = 315

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           DVL++GFPCQ FS  G
Sbjct: 59 FDVLISGFPCQAFSING 75


>gi|323222462|gb|EGA06833.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
          Length = 203

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 24/101 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG----- 54
           +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F      
Sbjct: 92  RFIDLFAGIGGIRRGFEAIGG----QCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRD 147

Query: 55  ------------DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                       + A+   Q IP HDVLLAGFPCQPFS AG
Sbjct: 148 ITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|308184861|ref|YP_003928994.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060781|gb|ADO02677.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 318

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  ++KTY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALKTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALVSGFPCQAFSING 81


>gi|295098276|emb|CBK87366.1| DNA-methyltransferase (dcm) [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 477

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIF-GDIA 57
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 92  FRFIDLFAGIGGIR----HGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPDAHQFNADIR 147

Query: 58  KI----KT------------QDIPDHDVLLAGFPCQPFSQAG 83
            +    KT              IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHKTGVSDEEAAEHIRNTIPAHDVLLAGFPCQPFSLAG 189


>gi|213864727|ref|ZP_03386846.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 237

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 52/101 (51%), Gaps = 24/101 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIAK 58
           +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI  
Sbjct: 92  RFIDLFAGIGGIRRGFEAI----GGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRD 147

Query: 59  IK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 148 ITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|156933419|ref|YP_001437335.1| DNA cytosine methylase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531673|gb|ABU76499.1| hypothetical protein ESA_01237 [Cronobacter sakazakii ATCC BAA-894]
          Length = 481

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 98  FRFIDLFAGIGGIR----SGFEAAGGQCVFTSEWNKHAVRTYKANWYCDPQQHQFNEDIR 153

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 154 DVTLSHKPEISDEAAAEHIRACIPQHDVLLAGFPCQPFSLAG 195


>gi|291320332|ref|YP_003515594.1| modification methylase Bsp6I [Mycoplasma agalactiae]
 gi|290752665|emb|CBH40638.1| Modification methylase Bsp6I [Mycoplasma agalactiae]
          Length = 315

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT   + +   +++E +  ++ TY++NF   +   DI K+ 
Sbjct: 1  MYKVGSLFAGVGGIDLGFEQTGKFKTI---WANEFDKNAILTYKSNFSTFVSNEDIRKVD 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+ D++L+GFPC  FS AG
Sbjct: 58 VRDIPEVDIILSGFPCTSFSVAG 80


>gi|298735876|ref|YP_003728401.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|298355065|emb|CBI65937.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 312

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+L++GFPCQ FS  G
Sbjct: 59 FDMLVSGFPCQAFSING 75


>gi|213024641|ref|ZP_03339088.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 189

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 24/101 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG----- 54
           +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F      
Sbjct: 92  RFIDLFAGIGGIRRGFEAIGG----QCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRD 147

Query: 55  ------------DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                       + A+   Q IP HDVLLAGFPCQPFS AG
Sbjct: 148 ITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|15645735|ref|NP_207912.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
          pylori 26695]
 gi|2314272|gb|AAD08164.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
          pylori 26695]
          Length = 312

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D L++GFPCQ FS  G
Sbjct: 59 FDALISGFPCQAFSING 75


>gi|313678561|ref|YP_004056301.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950401|gb|ADR24996.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 315

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT   + +   +++E +  ++ TY++NF   +   DI K+ 
Sbjct: 1  MYKVGSLFAGVGGIDLGFEQTGKFKTI---WANEFDKNALLTYKSNFSTFVSNVDIRKVN 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D++L+GFPC  FS AG
Sbjct: 58 VNDIPDVDIILSGFPCTSFSIAG 80


>gi|163937935|ref|YP_001642821.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
 gi|163865790|gb|ABY46846.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
          Length = 444

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K   LF GIGG     EQ  N +   C  +SE++ Y+   Y+  +    + GDI K+++
Sbjct: 9  FKYVSLFSGIGG----FEQALNGKGGICVMASEVDKYANTAYELIYGKKTV-GDITKVRS 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P HD+L AGFPC  FS AG
Sbjct: 64 MDVPRHDILTAGFPCPTFSVAG 85


>gi|15612115|ref|NP_223767.1| type II DNA modification (methyltransferase [Helicobacter pylori
          J99]
 gi|4155654|gb|AAD06642.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
          pylori J99]
          Length = 321

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEAIRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLVSGFPCQAFSING 81


>gi|332362221|gb|EGJ40021.1| DNA methylase [Streptococcus sanguinis SK1056]
          Length = 412

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
           I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 21  IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 77

Query: 63  DIPDH--DVLLAGFPCQPFSQAG 83
           DIP    DV++ GFPCQ FS AG
Sbjct: 78  DIPAERVDVIMGGFPCQAFSIAG 100


>gi|308061739|gb|ADO03627.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
          Length = 704

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L+       ++C FS+E NP+++  YQANF +     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLALDSL----GLKCVFSAENNPHAIAMYQANFDDDST-CDITLLN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|217032692|ref|ZP_03438178.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
 gi|216945622|gb|EEC24273.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
          Length = 211

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+L++GFPCQ FS  G
Sbjct: 59 FDMLVSGFPCQAFSING 75


>gi|268610192|ref|ZP_06143919.1| cytosine-specific DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 475

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
            +  DLF G+GG      Q   +   EC  ++E N   VKTY+ N+      + GD+ KI
Sbjct: 59  FRFIDLFAGVGG----FHQAMRYLGGECVMAAETNQECVKTYKLNYKIDEKEVRGDVNKI 114

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             + I   DVL AGFPCQPFS+AG
Sbjct: 115 DPETIAPFDVLCAGFPCQPFSKAG 138


>gi|317011319|gb|ADU85066.1| type II DNA modification enzyme [Helicobacter pylori
          SouthAfrica7]
          Length = 321

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINDEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLISGFPCQAFSING 81


>gi|237732007|ref|ZP_04562488.1| DNA cytosine methylase [Citrobacter sp. 30_2]
 gi|226907546|gb|EEH93464.1| DNA cytosine methylase [Citrobacter sp. 30_2]
          Length = 476

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANNYCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHHDGVSDQQAAEHIRQHVPEHDVLLAGFPCQPFSLAG 188


>gi|322392562|ref|ZP_08066022.1| DNA methylase [Streptococcus peroris ATCC 700780]
 gi|321144554|gb|EFX39955.1| DNA methylase [Streptococcus peroris ATCC 700780]
          Length = 406

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 15 IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 71

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DIP    DV++ GFPCQ FS AG
Sbjct: 72 DIPAERVDVIMGGFPCQAFSIAG 94


>gi|260598469|ref|YP_003211040.1| DNA cytosine methylase [Cronobacter turicensis z3032]
 gi|260217646|emb|CBA31957.1| DNA-cytosine methyltransferase [Cronobacter turicensis z3032]
          Length = 450

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR      F     +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 67  FRFIDLFAGIGGIR----SGFEAAGGQCVFTSEWNKHAVRTYKANWYCDPQLHQFNEDIR 122

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 123 DVTLSHKPEVSDEAAADHIRACIPPHDVLLAGFPCQPFSLAG 164


>gi|170718974|ref|YP_001784137.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827103|gb|ACA32474.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 323

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIGG RL LE       +EC   SE++P    TYQ  F +   +GD+ KI  
Sbjct: 7  LKFMDFCSGIGGGRLGLELN----GMECIAHSELDPNPDLTYQLFFNDKNNYGDLTKINI 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P+ DV+LAGFPCQ FS  G
Sbjct: 63 NDLPEFDVMLAGFPCQTFSIVG 84


>gi|167920593|ref|ZP_02507684.1| cytosine-specific DNA methylase [Burkholderia pseudomallei
          BCC215]
          Length = 454

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 11/85 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
           +  DLF G+GG  L L++        C +++E   +    Y+ NF   P     GDI  
Sbjct: 4  FRFVDLFAGLGGFHLALQRLGG----TCVYAAEWQEHLRDLYEVNFGLRPE----GDITL 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  +D+P HDVL AGFPCQPFS+AG
Sbjct: 56 ISPKDVPSHDVLTAGFPCQPFSKAG 80


>gi|307710826|ref|ZP_07647254.1| DNA-cytosine methyltransferase family protein [Streptococcus
          mitis SK321]
 gi|307617432|gb|EFN96604.1| DNA-cytosine methyltransferase family protein [Streptococcus
          mitis SK321]
          Length = 406

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 15 IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 71

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DIP    DV++ GFPCQ FS AG
Sbjct: 72 DIPAERVDVIMGGFPCQAFSIAG 94


>gi|291085206|ref|ZP_06352388.2| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291072321|gb|EFE10430.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 476

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N ++V+TY+AN    P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIR----RGFEAIGGQCVFTSEWNKHAVRTYKANNYCDPLQHRFNEDIR 146

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHHDGVSDQQAAEHIRQHVPEHDVLLAGFPCQPFSLAG 188


>gi|322376119|ref|ZP_08050628.1| DNA modification methylase [Streptococcus sp. C300]
 gi|321278887|gb|EFX55931.1| DNA modification methylase [Streptococcus sp. C300]
          Length = 406

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 15 IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 71

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DIP    DV++ GFPCQ FS AG
Sbjct: 72 DIPAERVDVIMGGFPCQAFSIAG 94


>gi|308183225|ref|YP_003927352.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
 gi|308065410|gb|ADO07302.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
          Length = 318

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINDEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLVSGFPCQAFSING 81


>gi|210135280|ref|YP_002301719.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133248|gb|ACJ08239.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 315

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D L++GFPCQ FS  G
Sbjct: 59 FDALISGFPCQAFSING 75


>gi|291530357|emb|CBK95942.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 317

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI L  EQ       +  +++EI+  + KTYQ NFP T LI  DI K+ 
Sbjct: 1  MKLGSLFAGIGGIELGFEQV----GFDIVWANEIDTDACKTYQFNFPKTKLIKSDIRKVN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++   D++ AGFPCQPFS  G
Sbjct: 57 FSELEKIDIITAGFPCQPFSVCG 79


>gi|157151353|ref|YP_001449946.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157076147|gb|ABV10830.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
          Challis substr. CH1]
          Length = 406

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 15 IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 71

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DIP    DV++ GFPCQ FS AG
Sbjct: 72 DIPAERVDVIMGGFPCQAFSIAG 94


>gi|306824635|ref|ZP_07457980.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433203|gb|EFM36174.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 410

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E + Y+ +TYQ N P+T + G DI  ++ +
Sbjct: 15 IAAFFSGVGGIELGFEQTNEFRVV---YANEFDKYARQTYQLNHPDTYLDGRDIHDVQPE 71

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DIP    D+++ GFPCQ FS AG
Sbjct: 72 DIPVERVDIIMGGFPCQAFSIAG 94


>gi|294678239|ref|YP_003578854.1| cytosine-specific DNA-methyltransferase [Rhodobacter capsulatus
          SB 1003]
 gi|294477059|gb|ADE86447.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Rhodobacter capsulatus SB 1003]
          Length = 451

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG    LE    H    C F+SE+N      Y+ NF      GDI +   
Sbjct: 4  LKFADLFAGLGGFHQALE-GLGH---TCVFASELNSGLADLYEKNF-GIRPHGDIRE-AI 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P HD+L AGFPCQPFS+AG
Sbjct: 58 DDVPPHDILCAGFPCQPFSKAG 79


>gi|2765225|emb|CAA73243.1| methylase [Lactococcus lactis subsp. cremoris]
          Length = 317

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLKI   F G+GGI L  E        +  +++E + Y+  T++ NF   +   DI  ++
Sbjct: 1  MLKIASFFAGVGGIDLGFENA----GFKTIYANEFDNYAADTFEMNFDVKVDRRDINDVQ 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            +IPD D++LAGFPCQ FS AG
Sbjct: 57 ADEIPDFDIMLAGFPCQAFSIAG 79


>gi|5420107|emb|CAB46561.1| cytosine-specific methyltransferase [Streptococcus thermophilus]
          Length = 316

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +   F G+GGI L  E+       +  +++E + Y+  T++ NF  T+   DI  + 
Sbjct: 1  MLTVASFFAGVGGIDLGFEKA----GFKTIYANEFDNYAADTFELNFDVTVDRRDINTVP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+ DV+LAGFPCQ FS AG
Sbjct: 57 AEDIPNFDVMLAGFPCQAFSIAG 79


>gi|197302809|ref|ZP_03167861.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
          29176]
 gi|197298046|gb|EDY32594.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
          29176]
          Length = 333

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF G+GG R+ LE        +C +S+E N    K Y  NF + +  GDI ++    IP
Sbjct: 16 DLFAGLGGFRIALESL----GAKCVYSNEWNVPVQKVYADNFGD-IPEGDITQVDENTIP 70

Query: 66 DHDVLLAGFPCQPFSQAG 83
          DHD+L AGFPCQ FS +G
Sbjct: 71 DHDILCAGFPCQAFSISG 88


>gi|313651376|gb|EFS15772.1| modification methylase EcoRII [Shigella flexneri 2a str. 2457T]
          Length = 463

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGG+R      F+    +C F+SE N +S +TY AN+           DI 
Sbjct: 80  FRFIDLFAGIGGLR----SGFDAIGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 135

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            I   +                IPDHDVLLAGFPCQPFS AG
Sbjct: 136 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 177


>gi|18466581|ref|NP_569389.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|160431784|ref|YP_001551898.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|16505897|emb|CAD09776.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|159885325|dbj|BAF92929.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
          Length = 475

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGG+R      F+    +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLR----SGFDAIGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 147

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            I   +                IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|260752101|ref|YP_003237616.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257767571|dbj|BAI39065.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 475

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGG+R      F+    +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLR----SGFDAIGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 147

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            I   +                IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|169786848|ref|YP_001700742.1| modification methylase (cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter baumannii
           SDF]
 gi|169150765|emb|CAP02959.1| modification methylase (Cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter
           baumannii]
          Length = 366

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL     F +    C FSSEI+  + KTY ANF +T  +GDI    T
Sbjct: 42  FKFIDLFAGIGGFRL----AFQNLGGRCVFSSEIDLAAQKTYTANFGDTP-YGDITLEST 96

Query: 62  QD-IPDH-DVLLAGFPCQPFSQAG 83
           +D IPD+ D+L  GFPCQ FS AG
Sbjct: 97  KDAIPDNFDILCGGFPCQAFSIAG 120


>gi|108563484|ref|YP_627800.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107837257|gb|ABF85126.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 313

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+PD
Sbjct: 3  FCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           D L++GFPCQ FS  G
Sbjct: 59 FDALISGFPCQAFSING 75


>gi|322510834|gb|ADX06148.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 344

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLFCGIG        +F     +C  S +I+    +TY++N+   L  GDI +I+ 
Sbjct: 69  IKFIDLFCGIGSFHY----SFKKLGWDCVMSCDIDKAVKETYKSNY-GILPLGDITEIEP 123

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           ++I ++D+L AGFPCQPFSQ G
Sbjct: 124 KNITNYDILCAGFPCQPFSQCG 145


>gi|327403407|ref|YP_004344245.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327318915|gb|AEA43407.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
          Length = 422

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL L+        +C F+SE +  + KTYQANF   + FGDI K  T
Sbjct: 97  FKFIDLFAGIGGFRLALQNL----GGKCVFTSEWDEQAKKTYQANF-GEIPFGDITKDST 151

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IPD  DVL  GFPCQ FS AG
Sbjct: 152 KAFIPDGFDVLCGGFPCQAFSIAG 175


>gi|317010127|gb|ADU80707.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 703

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L+       ++C FS+E NP+++  Y+ANF N     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLALDSL----GLKCVFSAENNPHAIAMYKANF-NDDSTCDITILN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|207091758|ref|ZP_03239545.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 703

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L+       ++C FS+E NP+++  Y+ANF N     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLALDSL----GLKCVFSAENNPHAIAMYKANF-NDDSTCDITILN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|10957343|ref|NP_058367.1| DNA cytosine methylase [Salmonella typhi]
 gi|7800396|gb|AAF69992.1|AF250878_153 EcoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|145849042|emb|CAM91602.1| ecoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 475

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 50/102 (49%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGG+R      F+    +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLR----SGFDAIGGKCVFTSEWNQFSRRTYSANWYCEDTEHHFNSDIR 147

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            I   +                IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSEDQAYASIAASIPDHDVLLAGFPCQPFSIAG 189


>gi|127417|sp|P25262|MTB1_HERAU RecName: Full=Modification methylase HgiBI; Short=M.HgiBI;
          AltName: Full=Cytosine-specific methyltransferase HgiBI
 gi|43478|emb|CAA38927.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 9/84 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FGDIAKI 59
          +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P   +    GDI  I
Sbjct: 5  RFIDLFAGIGGFRLGLEAV----GGVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITAI 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q +P HDVL+ G PCQP+S AG
Sbjct: 61 --QQLPAHDVLVGGVPCQPWSIAG 82


>gi|331270911|ref|YP_004385622.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
 gi|329127303|gb|AEB77247.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
          Length = 318

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 8/82 (9%)

Query: 1  MLKITDLFCG--IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          + K  +LF G  +GG+ LD      +   EC   SE++ Y++K Y++NFPN + +GDI K
Sbjct: 3  IFKYLELFAGSGLGGMVLD------NYGGECIGYSEVDKYAIKNYESNFPNKINYGDITK 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFS 80
          I  +++P  D+L+ G PCQ  S
Sbjct: 57 INEKELPKFDLLIGGSPCQNIS 78


>gi|23100788|ref|NP_694255.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
          HTE831]
 gi|22779022|dbj|BAC15289.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
          HTE831]
          Length = 370

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF GIGGI +  EQ          +++E++ ++ +TY+ NF + LI  D+  IK  D
Sbjct: 5  VASLFAGIGGIDIGFEQA----GARVIWANEMDKHACETYRQNFESKLIEDDVRNIKESD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D++ AG+PC  FS AG
Sbjct: 61 MPDADIITAGWPCVAFSIAG 80


>gi|258652183|ref|YP_003201339.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM
          44233]
 gi|258555408|gb|ACV78350.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM
          44233]
          Length = 467

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
           +  DLF G+GG  + L +        C F++E++P     Y  N+     + DI     
Sbjct: 8  FRFVDLFAGLGGFHVALRELGG----ACVFAAELDPTLNALYAENY-QLEAWKDINDLAS 62

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++I +Q++PDHDVL AGFPCQPFS+AG
Sbjct: 63 SRIISQEVPDHDVLTAGFPCQPFSKAG 89


>gi|127447|sp|P25266|MTE1_HERAU RecName: Full=Modification methylase HgiEI; Short=M.HgiEI;
          AltName: Full=Cytosine-specific methyltransferase HgiEI
 gi|43471|emb|CAA38944.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 9/84 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FGDIAKI 59
          +  DLF GIGG RL LE         C  S+EI+  ++K Y  N+P   +    GDI +I
Sbjct: 5  RFIDLFAGIGGFRLGLEAV----GGVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDITQI 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q +P HDVL+ G PCQP+S AG
Sbjct: 61 --QQLPAHDVLVGGVPCQPWSIAG 82


>gi|254779672|ref|YP_003057778.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
 gi|254001584|emb|CAX29633.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
          Length = 318

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++PD D L++GFPCQ FS  G
Sbjct: 59 PNNLPDFDALVSGFPCQAFSING 81


>gi|24527986|emb|CAD33713.1| putative DNA methylase [Escherichia coli]
          Length = 310

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L L+Q+     ++  ++++I   +V TY+ N    ++ GDIA I +
Sbjct: 1  MKVVSLFSGAGGLDLGLKQS----GLDIIWANDIYEDAVDTYKRNIGEHIVLGDIANINS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIP+ DV++ GFPCQ FS A
Sbjct: 57 SDIPNCDVVVGGFPCQGFSVA 77


>gi|207109252|ref|ZP_03243414.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 210

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +L   DLF GIGG RL L+       ++C FS+E NP+++  Y+ANF N     DI  + 
Sbjct: 29  LLTYADLFAGIGGFRLALDSL----GLKCVFSAENNPHAIAMYKANF-NDDSTCDITILN 83

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
              +P+ D+L AGFPCQ FS  G
Sbjct: 84  PNTMPNFDILCAGFPCQAFSVCG 106


>gi|304398880|ref|ZP_07380750.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
 gi|304353584|gb|EFM17961.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
          Length = 458

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 50/101 (49%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------- 47
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN               
Sbjct: 89  FRFIDLFAGIGGIR----KGFEAIGGKCVFTSEWNKEAVRTYKANHYSDPLEHHFNTDIR 144

Query: 48  ----PNTLIFGD-IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
               P  L   D I +     IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPEGLTDDDAIYRAIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|159027646|emb|CAO89510.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 728

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF GIGG RL  E        +C +S EI+    K Y  NF   +   DI KI  
Sbjct: 6  LRFIDLFAGIGGFRLAFESV----GYDCVYSCEIDENCRKVYFNNF-QEIPDQDIRKIAI 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD +VL AGFPCQPFS +G
Sbjct: 61 HDLPDFEVLTAGFPCQPFSISG 82


>gi|311742739|ref|ZP_07716548.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
          15272]
 gi|311314367|gb|EFQ84275.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
          15272]
          Length = 428

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--KIKTQD 63
          DLF GIGG    L +       EC ++SEI+  + K YQ N+ N  + GDI         
Sbjct: 12 DLFAGIGGFHAALSELGG----ECVYASEIDEAAAKIYQHNW-NMPVAGDIVPETDPVVK 66

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P HDVL AGFPCQPFS++G
Sbjct: 67 VPPHDVLAAGFPCQPFSKSG 86


>gi|308185227|ref|YP_003929360.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
 gi|308061147|gb|ADO03043.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
          Length = 317

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGG+ L     F     E  ++++ + ++V+TY+AN    +I GDI +I+ 
Sbjct: 1  MKIASLFSGIGGLDLG----FIQNGFEIVWANDFDKHAVETYKANIGQNIILGDI-EIEK 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I  HD+L+ GFPCQPFS  G
Sbjct: 56 DHICGHDILIGGFPCQPFSTLG 77


>gi|110643908|ref|YP_671638.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
 gi|110345500|gb|ABG71737.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
          Length = 315

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+  LF G GG+ L     F +   +  ++++I+  +V TY+ N  + ++  D+++I 
Sbjct: 1  MMKVVSLFSGAGGLDL----GFKNAGFQIVWANDIDSDAVLTYKKNIGDHIVLKDLSQID 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
            DIPD DV++ GFPCQ FSQA
Sbjct: 57 MDDIPDCDVVIGGFPCQGFSQA 78


>gi|304387412|ref|ZP_07369603.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
 gi|304338505|gb|EFM04624.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
          Length = 336

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF GIGG R+ +E         C FSSE +  + +TYQ NF N + +GDI   +T+  I
Sbjct: 24 DLFAGIGGFRIAMENVGGR----CVFSSEWDDKARQTYQVNF-NDIPYGDITLKETKAAI 78

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P   DVL AGFPCQPFS AG
Sbjct: 79 PSKFDVLTAGFPCQPFSIAG 98


>gi|15677157|ref|NP_274310.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|161870164|ref|YP_001599334.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          053442]
 gi|218768314|ref|YP_002342826.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|7226530|gb|AAF41666.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|121052322|emb|CAM08652.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|161595717|gb|ABX73377.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          053442]
 gi|254670478|emb|CBA06174.1| putative DNA modification methylase [Neisseria meningitidis
          alpha153]
 gi|308389411|gb|ADO31731.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          alpha710]
 gi|316984080|gb|EFV63058.1| modification methylase SsoII [Neisseria meningitidis H44/76]
 gi|319410559|emb|CBY90927.1| putative type II restriction-modification system enzyme Mod
          [Neisseria meningitidis WUE 2594]
 gi|325134466|gb|EGC57111.1| modification methylase EcoRII [Neisseria meningitidis M13399]
 gi|325136204|gb|EGC58812.1| modification methylase EcoRII [Neisseria meningitidis M0579]
 gi|325140483|gb|EGC63004.1| modification methylase EcoRII [Neisseria meningitidis CU385]
 gi|325144567|gb|EGC66866.1| modification methylase EcoRII [Neisseria meningitidis M01-240013]
 gi|325200082|gb|ADY95537.1| modification methylase EcoRII [Neisseria meningitidis H44/76]
 gi|325201996|gb|ADY97450.1| modification methylase EcoRII [Neisseria meningitidis M01-240149]
 gi|325205934|gb|ADZ01387.1| modification methylase EcoRII [Neisseria meningitidis M04-240196]
 gi|325208252|gb|ADZ03704.1| modification methylase EcoRII [Neisseria meningitidis NZ-05/33]
          Length = 337

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF GIGG R+ +E         C FSSE +  + +TYQ NF N + +GDI   +T+  I
Sbjct: 24 DLFAGIGGFRIAMENVGGR----CVFSSEWDDKARQTYQVNF-NDIPYGDITLKETKAAI 78

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P   DVL AGFPCQPFS AG
Sbjct: 79 PSKFDVLTAGFPCQPFSIAG 98


>gi|325130344|gb|EGC53110.1| modification methylase EcoRII [Neisseria meningitidis OX99.30304]
          Length = 337

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF GIGG R+ +E         C FSSE +  + +TYQ NF N + +GDI   +T+  I
Sbjct: 24 DLFAGIGGFRIAMENVGGR----CVFSSEWDDKARQTYQVNF-NDIPYGDITLKETKAAI 78

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P   DVL AGFPCQPFS AG
Sbjct: 79 PSKFDVLTAGFPCQPFSIAG 98


>gi|167837977|ref|ZP_02464836.1| modification methylase HaeII [Burkholderia thailandensis MSMB43]
          Length = 111

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L L++        C +++E   +    Y+ NF      GDI  I  
Sbjct: 4  FRFVDLFAGLGGFHLALQRL----GGTCVYAAEWQEHLRDLYEVNF-GLRPEGDITLISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +D+P HDVL AGFPCQPFS+AG
Sbjct: 59 KDVPSHDVLTAGFPCQPFSKAG 80


>gi|111607698|gb|ABH10736.1| DNA methyltransferase [Flavobacterium sp. 4H]
          Length = 408

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL L+        +C F+SE N  + KTY+ NF   + FGDI K + 
Sbjct: 95  FKFIDLFAGIGGFRLALQNV----GGKCVFTSEWNNEAQKTYRENF-GEVPFGDITKERN 149

Query: 62  QD-IPDH-DVLLAGFPCQPFSQAG 83
           ++ IP+  D+L AGFPCQ FS AG
Sbjct: 150 KNYIPEKFDILCAGFPCQAFSIAG 173


>gi|327399867|ref|YP_004346898.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
          1112]
 gi|327182537|gb|AEA32972.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
          1112]
          Length = 401

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  +QT   R V   +++E +  + KTY  N P T + G DI  +K+ 
Sbjct: 12 IDAFFAGVGGIELGFKQTGEFRVV---YANEFDKNARKTYAENNPETPLDGRDIHDVKSD 68

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +IPD +V++ GFPCQ FS AG
Sbjct: 69 EIPDSNVIMGGFPCQAFSIAG 89


>gi|327394286|dbj|BAK11708.1| modification methylase EcoRII [Pantoea ananatis AJ13355]
          Length = 459

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR   E+       +C F+SE N  +++TY+AN    P    F    +
Sbjct: 89  FRFIDLFAGIGGIRRGFERIGG----KCVFTSEWNKEAIRTYRANHYSDPAEHHFNTDIR 144

Query: 59  IKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
             TQ                 IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPAGLTDEQAIYQSIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|291617874|ref|YP_003520616.1| EcoRIIM [Pantoea ananatis LMG 20103]
 gi|291152904|gb|ADD77488.1| EcoRIIM [Pantoea ananatis LMG 20103]
          Length = 459

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 50/101 (49%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGGIR   E+       +C F+SE N  +++TY+AN    P    F    +
Sbjct: 89  FRFIDLFAGIGGIRRGFERIGG----KCVFTSEWNKEAIRTYRANHYSDPAEHHFNTDIR 144

Query: 59  IKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
             TQ                 IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPAGLTDEQAIYQSIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|220929948|ref|YP_002506857.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000276|gb|ACL76877.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 338

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF G+GG R+ LE        +C +S+E +    K Y  NF + +  GDI +I  
Sbjct: 12 FKFIDLFAGLGGFRIALESL----GAKCVYSNEWDKPVRKVYTDNFGD-IPEGDITQINE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+L AGFPCQ FS +G
Sbjct: 67 NSIPEHDILCAGFPCQAFSISG 88


>gi|329121769|ref|ZP_08250386.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
          19965]
 gi|327468239|gb|EGF13725.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
          19965]
          Length = 416

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV---ECFFSSEINPYSVKTYQANFPNTLIFG-DIA 57
          +K+ DLF G+GG  L L +  N   V     +  S  N ++   Y+ NFP T I   DI 
Sbjct: 6  IKVVDLFAGVGGFHLGLSRASNRYEVVWANQYEPSRKNQFAYNIYKKNFPKTPISNEDIR 65

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQA 82
          KI   +IP  D+L+AGFPCQ +S A
Sbjct: 66 KINKDEIPKMDLLVAGFPCQDYSVA 90


>gi|256819660|ref|YP_003140939.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581243|gb|ACU92378.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 318

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G+GG R  L+        EC FSSE + ++ +TY+ N+   + FGDI   +T
Sbjct: 5  VKFIDLFAGVGGFRYALQNI----GAECVFSSEWDKFAQQTYKLNY-GEVPFGDITLQET 59

Query: 62 QD-IPDH-DVLLAGFPCQPFSQAG 83
          +D IP+  D+L AGFPCQ FS AG
Sbjct: 60 KDNIPNEFDILCAGFPCQAFSIAG 83


>gi|313668796|ref|YP_004049080.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica ST-640]
 gi|313006258|emb|CBN87720.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica 020-06]
          Length = 362

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QDI 64
           DLF GIGG R+ ++        EC FSSE +  + +TY+ANF   + FGDI   +T Q I
Sbjct: 40  DLFAGIGGFRIAMQNLGG----ECVFSSEWDEKAKQTYEANF-GEVPFGDITLEETKQCI 94

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P+  DVL AGFPCQ FS AG
Sbjct: 95  PEQFDVLCAGFPCQAFSIAG 114


>gi|195867949|ref|ZP_03079946.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
 gi|195660345|gb|EDX53605.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
          Length = 319

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|308187315|ref|YP_003931446.1| DNA cytosine methylase [Pantoea vagans C9-1]
 gi|308057825|gb|ADO09997.1| DNA cytosine methylase [Pantoea vagans C9-1]
          Length = 458

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 53/101 (52%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR    + F     +C F+SE N  +V+TY+AN    P    F  DI 
Sbjct: 89  FRFIDLFAGIGGIR----KGFEAIGGKCVFTSEWNKEAVRTYKANHYSDPLEHHFNTDIR 144

Query: 58  KIK-----TQD----------IPDHDVLLAGFPCQPFSQAG 83
           ++      T D          +PDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPEGLTDDEEIYRAIDAAVPDHQVLLAGFPCQPFSLAG 185


>gi|209554428|ref|YP_002284952.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
          str. ATCC 33699]
 gi|209541929|gb|ACI60158.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
          str. ATCC 33699]
          Length = 319

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|171920707|ref|ZP_02931926.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
          str. ATCC 33698]
 gi|185179015|ref|ZP_02964765.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188024024|ref|ZP_02996783.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188518336|ref|ZP_03003849.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
          serovar 11 str. ATCC 33695]
 gi|188524309|ref|ZP_03004347.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 12 str. ATCC 33696]
 gi|198273488|ref|ZP_03206024.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 4 str. ATCC 27816]
 gi|225550923|ref|ZP_03771872.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 2 str. ATCC 27814]
 gi|225551062|ref|ZP_03772008.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 8 str. ATCC 27618]
 gi|171903447|gb|EDT49736.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
          str. ATCC 33698]
 gi|184209104|gb|EDU06147.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188019052|gb|EDU57092.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188997975|gb|EDU67072.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
          serovar 11 str. ATCC 33695]
 gi|195660089|gb|EDX53469.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 12 str. ATCC 33696]
 gi|198250008|gb|EDY74788.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 4 str. ATCC 27816]
 gi|225378877|gb|EEH01242.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 8 str. ATCC 27618]
 gi|225380077|gb|EEH02439.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 2 str. ATCC 27814]
          Length = 319

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|313674544|ref|YP_004052540.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941242|gb|ADR20432.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 420

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG R+ ++        +C F+SE +  +  TY+ANF     FGDI K +T
Sbjct: 98  FKFIDLFAGIGGFRIAMQNLGG----KCIFTSEWDSKAKVTYRANFGEE-PFGDITKEET 152

Query: 62  QD-IPDH-DVLLAGFPCQPFSQAG 83
           +  IPD+ D+L AGFPCQ FS AG
Sbjct: 153 KSYIPDNFDLLCAGFPCQAFSIAG 176


>gi|218900599|ref|YP_002449010.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218543463|gb|ACK95857.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L   Q  +    +  ++++I+  +V+TY+ N  N ++  D+ ++ T
Sbjct: 1  MKVISLFSGAGGLDLGFVQAGH----QIIWANDIDKDAVETYKKNLGNHIVLKDLKEVDT 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIPD D+++ GFPCQ FS A
Sbjct: 57 NDIPDADIVIGGFPCQGFSVA 77


>gi|16077674|ref|NP_388488.1| DNA-methyltransferase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221308443|ref|ZP_03590290.1| hypothetical protein Bsubs1_03408 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221312765|ref|ZP_03594570.1| hypothetical protein BsubsN3_03384 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221317688|ref|ZP_03598982.1| hypothetical protein BsubsJ_03343 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221321964|ref|ZP_03603258.1| hypothetical protein BsubsS_03414 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81669152|sp|O34680|YDIP_BACSU RecName: Full=Probable BsuMI modification methylase subunit ydiP;
          Short=M2.BsuMI; AltName: Full=Cytosine-specific
          methyltransferase M2.BsuMI
 gi|2521998|dbj|BAA22751.1| ydiP [Bacillus subtilis]
 gi|2632920|emb|CAB12426.1| DNA-methyltransferase (cytosine-specific) [Bacillus subtilis
          subsp. subtilis str. 168]
          Length = 389

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGGI L L Q+ +   + C    E++P +      NFP   I  DI +I+ 
Sbjct: 1  MKVVSLFSGIGGIELGLHQSGHTTEIFC----EVDPLAKAVLSKNFPGVKIEDDINEIR- 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++ AGFPCQ  SQAG
Sbjct: 56 -ELPSCDLVAAGFPCQDLSQAG 76


>gi|296126993|ref|YP_003634245.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018809|gb|ADG72046.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 324

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGG R+ LE        +C +S+E + ++ ++Y  NF + +   DI KI  + IP
Sbjct: 16 DLFAGIGGFRIALESL----GAKCVYSNEWDKFAKESYYKNFGD-IPDDDITKIDEKLIP 70

Query: 66 DHDVLLAGFPCQPFSQAG 83
           HD+L AGFPCQ FS +G
Sbjct: 71 AHDILCAGFPCQAFSISG 88


>gi|254410214|ref|ZP_05023994.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183250|gb|EDX78234.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 392

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 6/79 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
          +LFCGIGG R+  +Q    RN+   ++++  P + + Y+  F    +  GDI ++   +I
Sbjct: 11 ELFCGIGGFRIAADQ----RNIATIWANDRCPKACQVYRDRFGKAQLHQGDIYQL-VDEI 65

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P HD+L AGFPCQPFS AG
Sbjct: 66 PPHDLLTAGFPCQPFSSAG 84


>gi|224438066|ref|ZP_03659005.1| DNA-cytosine methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 342

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIKTQDI 64
          FC GIGG RL LE       ++C   SEI+  ++KTY+   N  N L  GD+ +I  Q +
Sbjct: 25 FCSGIGGGRLGLESC----GLKCLGFSEIDRAAIKTYKTFFNTSNELELGDLTQINPQSL 80

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PD D+L++GFPCQ FS  G
Sbjct: 81 PDFDLLISGFPCQSFSIVG 99


>gi|119510471|ref|ZP_01629604.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
 gi|119464893|gb|EAW45797.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
          Length = 727

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E+     + EC FS EI+    + Y  NF +     DI KI  
Sbjct: 6  LKFGDLFAGIGGFRLAFEKA----DYECVFSCEIDQACQQVYLNNFGDKP-ECDIRKIDL 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +P  DVL AGFPCQPFS  G
Sbjct: 61 EKLPYFDVLTAGFPCQPFSICG 82


>gi|331677320|ref|ZP_08377999.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331075055|gb|EGI46371.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 415

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 50/86 (58%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNH--RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M+K  DLF G GGIRL  EQ       + +C  SSEI+  + +TY+ NF     + DI  
Sbjct: 1  MIKFVDLFSGTGGIRLGFEQAMKEIGLSTKCVKSSEIDKKACETYKLNFDEE-SYCDIHD 59

Query: 59 IKTQDIPDH-DVLLAGFPCQPFSQAG 83
          +   DI +  DVLLAGFPCQ FS AG
Sbjct: 60 V---DIDESFDVLLAGFPCQAFSYAG 82


>gi|313144510|ref|ZP_07806703.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
 gi|313129541|gb|EFR47158.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
          Length = 323

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 7/79 (8%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIKTQDI 64
          FC GIGG RL LE       ++C   SEI+  ++KTY+   N  N L  GD+ +I  Q +
Sbjct: 6  FCSGIGGGRLGLESC----GLKCLGFSEIDRAAIKTYKTFFNTSNELELGDLTQINPQSL 61

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PD D+L++GFPCQ FS  G
Sbjct: 62 PDFDLLISGFPCQSFSIVG 80


>gi|150026305|ref|YP_001297131.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772846|emb|CAL44330.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG R+ ++        +C F+SE +  + KTY+AN+   + FGDI K + 
Sbjct: 95  FKFVDLFAGIGGFRMAMQNLGG----KCVFTSEWDKEAQKTYRANY-GEVPFGDITKQQI 149

Query: 62  QD-IPDH-DVLLAGFPCQPFSQAG 83
           +D IP   D+L AGFPCQ FS AG
Sbjct: 150 KDYIPSEFDLLCAGFPCQAFSIAG 173


>gi|227357019|ref|ZP_03841390.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|261345118|ref|ZP_05972762.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
          4541]
 gi|227162822|gb|EEI47782.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|282566805|gb|EFB72340.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
          4541]
          Length = 301

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K++  F GIGG  L LE++     +   F  EIN +       N+P+  ++ DI  +K  
Sbjct: 10 KVSSFFAGIGGFDLGLERS----GMNVVFQCEINKFCQSVLNKNWPDIPLYTDITNLKAN 65

Query: 63 DIPDHDVLLAGFPCQPFSQA 82
          DIPD +V   GFPCQ  S A
Sbjct: 66 DIPDSNVWCGGFPCQDVSSA 85


>gi|27497145|gb|AAO17336.1| methylase [Neisseria lactamica]
          Length = 384

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG R+ ++        EC FSSE +  + +TY+ANF   + FGDI   +T+  I
Sbjct: 62  DLFAGIGGFRIAMQNL----GGECVFSSEWDEKAKQTYEANF-GEVPFGDITLEETKQCI 116

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P+  DVL AGFPCQ FS AG
Sbjct: 117 PEQFDVLCAGFPCQAFSIAG 136


>gi|313201769|ref|YP_004040427.1| modification methylase [Methylovorus sp. MP688]
 gi|312441085|gb|ADQ85191.1| putative modification methylase [Methylovorus sp. MP688]
          Length = 378

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  +LF GIGG RL      +++N+   F+++I   +   Y + F  +++  GDI    
Sbjct: 1  MKAVELFSGIGGFRL----ACDNKNIRTVFANDIKTLACDVYASQFGTSVLHRGDIKDFF 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + IPDHD+L AGFPCQPFS AG
Sbjct: 57 DK-IPDHDLLTAGFPCQPFSSAG 78


>gi|261400408|ref|ZP_05986533.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209852|gb|EEZ76307.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 362

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG R+ ++        EC FSSE +  + +TY+ANF   + FGDI   +T+  I
Sbjct: 40  DLFAGIGGFRIAMQNL----GGECVFSSEWDEKAKQTYEANF-GEVPFGDITLEETKQCI 94

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P+  DVL AGFPCQ FS AG
Sbjct: 95  PEQFDVLCAGFPCQAFSIAG 114


>gi|67924690|ref|ZP_00518097.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67853467|gb|EAM48819.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 420

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M+   DLF GIGG+RL LE      N+E  C  SSEI+  + +TY  NF + +  GDI  
Sbjct: 1  MINFIDLFAGIGGMRLGLELACKKLNIETRCILSSEIDYKACETYALNF-DEIPQGDIKN 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    I   + +LAG PCQPFS AG
Sbjct: 60 I--DKISSFNFILAGSPCQPFSYAG 82


>gi|309378773|emb|CBX22599.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 342

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF GIGG R+ ++        EC FSSE +  + +TY+ANF   + FGDI   +T+  I
Sbjct: 20 DLFAGIGGFRIAMQNL----GGECVFSSEWDEKAKQTYEANF-GEVPFGDITLEETKQCI 74

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P+  DVL AGFPCQ FS AG
Sbjct: 75 PEQFDVLCAGFPCQAFSIAG 94


>gi|24527985|emb|CAD33712.1| putative DNA methylase [Escherichia coli]
          Length = 314

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F +   +  ++++I+  +V TY+ N  + ++  D+++I  
Sbjct: 1  MKVVSLFSGAGGLDL----GFKNAGFQIVWANDIDSDAVLTYKKNIGDHIVLRDLSQIDM 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIPD DV++ GFPCQ FSQA
Sbjct: 57 DDIPDCDVVIGGFPCQGFSQA 77


>gi|326798326|ref|YP_004316145.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
 gi|326549090|gb|ADZ77475.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
          Length = 409

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG RL  +        +C F+SE N  + +TY+ANF   + FGDI K  T+  I
Sbjct: 89  DLFAGIGGFRLACQNL----GGKCVFTSEWNESAKRTYEANFAE-VPFGDITKESTKAFI 143

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P   DVL AGFPCQ FS AG
Sbjct: 144 PKQFDVLCAGFPCQAFSIAG 163


>gi|303285300|ref|XP_003061940.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456351|gb|EEH53652.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 341

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 11/86 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDIA 57
          ++LF G+GG  + L            F+SE+ P++ +TY AN        P  LI GDI 
Sbjct: 4  SELFAGVGGFGIALRSLGG----SVVFASEMCPHARRTYAANNVVEIGDAPPALIVGDIT 59

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    IP HD+L  GFPCQ FSQ G
Sbjct: 60 DVCEDIIPPHDILTGGFPCQSFSQRG 85


>gi|167854495|ref|ZP_02477276.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase
          [Haemophilus parasuis 29755]
 gi|219872138|ref|YP_002476513.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA
          methylase [Haemophilus parasuis SH0165]
 gi|167854250|gb|EDS25483.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase
          [Haemophilus parasuis 29755]
 gi|219692342|gb|ACL33565.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA
          methylase [Haemophilus parasuis SH0165]
          Length = 320

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNT-LIF 53
           ++  LF G GG+ L  +  F+  N        E  ++++IN  + KT + NFP T ++ 
Sbjct: 5  FRVISLFSGAGGLDLGFKGGFDFLNKRYDENPFEVVWANDINEKACKTLKHNFPETPVVC 64

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          GDI  +    +P+ DV+L GFPCQ FS AG
Sbjct: 65 GDITLVDKSTLPEADVVLGGFPCQDFSLAG 94


>gi|282859944|ref|ZP_06269032.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587347|gb|EFB92564.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 448

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (62%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG R+ + Q    R   C FSSE +  + KTY  N+   + FGDI + +T+  I
Sbjct: 118 DLFAGIGGFRMAM-QNLGGR---CVFSSEWDIQAQKTYFLNY-GEVPFGDITQERTKAYI 172

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           PDH D+L AGFPCQ FS AG
Sbjct: 173 PDHFDILCAGFPCQAFSLAG 192


>gi|322510825|gb|ADX06139.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 390

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 47/92 (51%), Gaps = 18/92 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV-------ECFFSSEINPYSVKTYQANF---PNTL 51
           +K  DLFCG+G         FN  N+        C  +S+IN    K Y+ N+   P   
Sbjct: 79  VKYIDLFCGLGA----FHTAFNRNNILQNEVKYTCVLASDINECVRKIYEENYGIKPE-- 132

Query: 52  IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             GDI KI    +PD D+L AGFPCQPFS AG
Sbjct: 133 --GDINKINIDTMPDFDILCAGFPCQPFSIAG 162


>gi|252957|gb|AAA09969.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P      ++  I T 
Sbjct: 5  RFIDLFAGIGGFRLGLEAVGGI----CVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITTL 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          Q +P HD+++ G PCQP+S AG
Sbjct: 61 QQLPAHDLVVGGVPCQPWSIAG 82


>gi|127435|sp|P25264|MTC2_HERAU RecName: Full=Modification methylase HgiCII; Short=M.HgiCII;
          AltName: Full=Cytosine-specific methyltransferase
          HgiCII
 gi|43464|emb|CAA38935.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P      ++  I T 
Sbjct: 5  RFIDLFAGIGGFRLGLEAVGGI----CVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITTL 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          Q +P HD+++ G PCQP+S AG
Sbjct: 61 QQLPAHDLVVGGVPCQPWSIAG 82


>gi|295110826|emb|CBL24779.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 312

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F     +  +++++   +V+TY+ N  + +I  DI+KIK 
Sbjct: 1  MKVVSLFSGAGGLDLG----FKMAGHDIIWANDMYADAVETYKKNIGDHIICEDISKIKA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          +DIPD D+++ GFPCQ FS A
Sbjct: 57 EDIPDCDIIIGGFPCQGFSVA 77


>gi|308184574|ref|YP_003928707.1| site-specific DNA methylase [Helicobacter pylori SJM180]
 gi|308060494|gb|ADO02390.1| site-specific DNA methylase [Helicobacter pylori SJM180]
          Length = 405

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L     F     E  ++++    +V+TYQ N  + +I+GDI KI + 
Sbjct: 7  KIISLFSGCGGLDL----GFIKEGFEVIWANDFFKEAVETYQKNIGSHIIYGDITKIPSG 62

Query: 63 DIPDH-DVLLAGFPCQPFSQA 82
          DIP+  DVLL GFPCQ FS A
Sbjct: 63 DIPNECDVLLGGFPCQGFSVA 83


>gi|305665822|ref|YP_003862109.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
 gi|88710593|gb|EAR02825.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
          Length = 408

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
          LK+ +LF G+GG RL LE T N+   E  +S++  P + K   A+      FG       
Sbjct: 4  LKVIELFAGVGGFRLGLENTGNY---EVVWSNQWEP-ATKAQHASMVYEARFGSENHSNQ 59

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DI+++ T +IPD D+L+ GFPCQ +S A
Sbjct: 60 DISEVPTGEIPDADILVGGFPCQDYSVA 87


>gi|328947436|ref|YP_004364773.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447760|gb|AEB13476.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 439

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG RL ++        +C FSSE +  + +TY  N+   + FGDI K + +D I
Sbjct: 100 DLFAGIGGFRLAMQSC----GGQCVFSSEWDDAAKQTYFENY-GEVPFGDITKTEIKDLI 154

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P   DVL AGFPCQPFS +G
Sbjct: 155 PKKFDVLCAGFPCQPFSYSG 174


>gi|57116673|gb|AAW33810.1| M.HinP1I methyltransferase [Haemophilus influenzae]
          Length = 322

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIGG RL LE       +EC   SE++    KTY+  F ++   GD+ ++  
Sbjct: 4  LKFIDFCAGIGGGRLGLELN----GMECIAHSEVDLNPAKTYEIFFNDSRNLGDLTQLAP 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +PD D+++AGFPCQ FS  G
Sbjct: 60 KSLPDFDLMIAGFPCQTFSIIG 81


>gi|2760954|gb|AAB95336.1| EaeI methyltransferase alpha subunit [Enterobacter aerogenes]
          Length = 309

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K++  F GIGG  L LE+      +E  F  EIN +  K  + N+PN  +  DI ++   
Sbjct: 10 KVSSFFAGIGGFDLGLEKA----GMEVVFQCEINKFCQKVLRKNWPNVPLHTDITQLNAD 65

Query: 63 DIPDHDVLLAGFPCQPFSQA 82
          +IP+  V   GFPCQ  S A
Sbjct: 66 EIPESSVWCGGFPCQDVSSA 85


>gi|269978372|gb|ACZ55920.1| putative type I restriction-modification system specificity
          subunit S [Helicobacter pylori]
          Length = 263

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L     F     E  ++++    +V+TYQ N  + +++GDI KI + 
Sbjct: 11 KIISLFSGCGGLDL----GFIKEGFEVIWANDFFKEAVETYQKNIGSHIVYGDITKIPSG 66

Query: 63 DIPDH-DVLLAGFPCQPFSQA 82
          DIP+  DVLL GFPCQ FS A
Sbjct: 67 DIPNECDVLLGGFPCQGFSVA 87


>gi|260591129|ref|ZP_05856587.1| modification methylase AluI [Prevotella veroralis F0319]
 gi|260536994|gb|EEX19611.1| modification methylase AluI [Prevotella veroralis F0319]
          Length = 452

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 8/80 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--AKIKTQD 63
          DLF G+GG  L L++       +C F+SE+       Y+ NF N    G+I    IKT D
Sbjct: 14 DLFAGLGGFHLALQKL----GCKCVFASELQTDLQTLYERNF-NMKCSGNINDVNIKT-D 67

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IP HD+L  GFPCQPFSQAG
Sbjct: 68 IPHHDILCGGFPCQPFSQAG 87


>gi|253569226|ref|ZP_04846636.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
 gi|251841245|gb|EES69326.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
          Length = 448

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +  DLF G+GG  L LE+       +C F+SE+     + Y  N       GDI ++  +
Sbjct: 5  RFIDLFAGLGGFHLALEKL----GCKCVFASELQQELQELYYLNH-GIKCHGDINQVNIK 59

Query: 63 -DIPDHDVLLAGFPCQPFSQAG 83
           DIP HD+L AGFPCQPFS+AG
Sbjct: 60 NDIPSHDILCAGFPCQPFSKAG 81


>gi|113971536|ref|YP_735329.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
 gi|113886220|gb|ABI40272.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
          Length = 417

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG  L L      +  +  FSSE +  +  TY  N+  T  FGDI +   
Sbjct: 82  FKFIDLFAGIGGFNLAL----TSQGGKAVFSSEWDKSAKITYFNNYGKTP-FGDINQFTA 136

Query: 62  QD---------IPDHDVLLAGFPCQPFSQAG 83
           Q          IPDHDVL  GFPCQPFS AG
Sbjct: 137 QGVSNEFIETMIPDHDVLAGGFPCQPFSHAG 167


>gi|57505223|ref|ZP_00371152.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
          upsaliensis RM3195]
 gi|57016359|gb|EAL53144.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
          upsaliensis RM3195]
          Length = 326

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 7/79 (8%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDI 64
          FC GIGG RL LE        +C   SEI+  ++KTY+  F   N L  GD+ +I  Q +
Sbjct: 6  FCSGIGGGRLGLESC----GFKCLGFSEIDRAAIKTYKTFFDTSNELELGDLTQINPQSL 61

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PD D+L++GFPCQ FS  G
Sbjct: 62 PDFDLLISGFPCQSFSIVG 80


>gi|220903552|ref|YP_002478864.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219867851|gb|ACL48186.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
          Length = 310

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L L Q  +    E  ++++ +   V TY+ N  N  + GDI KI  
Sbjct: 1  MRIVSLFSGAGGLDLGLIQAGH----EIVWANDFDKDCVATYKKNIGNHAVLGDIKKINA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
            IP  +V++ GFPCQ FSQA
Sbjct: 57 SQIPRGEVVVGGFPCQGFSQA 77


>gi|110643909|ref|YP_671639.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
 gi|110345501|gb|ABG71738.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
          Length = 305

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          +F G GG+ L L+Q+     ++  ++++I   +V TY+ N    ++ GDIA I + DIP+
Sbjct: 1  MFSGAGGLDLGLKQS----GLDIIWANDIYEDAVDTYKRNIGEHIVLGDIANINSSDIPN 56

Query: 67 HDVLLAGFPCQPFSQA 82
           DV++ GFPCQ FS A
Sbjct: 57 CDVVVGGFPCQGFSVA 72


>gi|20385949|gb|AAM21516.1|AF438205_2 GST-M.SPRX methyltransferase fusion protein [Mutation screening
           vector pSPRX]
          Length = 659

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
           L++  LF GIGG    L      RN+    E    SEI+ Y+VK++ A  N    L FGD
Sbjct: 230 LRVMSLFSGIGGFEAAL------RNIGVGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGD 283

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 284 VSKIDKKKLPEFDILVGGSPCQSFSVAG 311


>gi|291543181|emb|CBL16291.1| Site-specific DNA methylase [Ruminococcus bromii L2-63]
          Length = 149

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  D+F GIGG R  LE        EC    EI+ Y+ + Y+A +     L F D  KI
Sbjct: 3  IRYFDMFAGIGGFRSGLEAI---GGFECVGYCEIDKYAKQAYEAMYDTGGELYFDDARKI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +PD D+L+ GFPCQ FS AG
Sbjct: 60 VLEQLPDFDLLVGGFPCQSFSIAG 83


>gi|323968851|gb|EGB64187.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 282

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 39/56 (69%), Gaps = 7/56 (12%)

Query: 31 FSSEINPYSVKTYQAN---FPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          FSSE + ++ KTY AN   FP+    GDI KI  +DIPDH++L+ GFPC  FSQAG
Sbjct: 1  FSSEWDKFAQKTYHANYGDFPD----GDITKIDEKDIPDHEILVGGFPCVAFSQAG 52


>gi|2599488|gb|AAB84141.1| FauI DNA methyltransferase [Flavobacterium aquatile]
          Length = 343

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN----HRNVECF---FSSEINPYSVKTYQANFPNTLIFG 54
          LK+  LFCG GG+ + ++  F     H +   F   ++ + + Y+ K Y  NF +     
Sbjct: 10 LKVASLFCGCGGMDVGIQGDFKFLKKHYDTLPFKVVYAVDNDAYATKIYNDNFAHKCETK 69

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          D+  I   ++PDHD+LL GFPCQ FS
Sbjct: 70 DVRDIVPSEVPDHDILLGGFPCQSFS 95


>gi|127459|sp|P15446|MTH2_HAEPA RecName: Full=Modification methylase HpaII; Short=M.HpaII; AltName:
           Full=Cytosine-specific methyltransferase HpaII
 gi|43630|emb|CAA35705.1| unnamed protein product [Haemophilus parainfluenzae]
 gi|305377|gb|AAA20481.1| HpaII modification methyltransferase [Haemophilus parainfluenzae]
          Length = 358

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG R+ ++        +C FSSE +  + KTY+ANF + L +GDI   +T+  I
Sbjct: 36  DLFAGIGGFRIAMQNL----GGKCIFSSEWDEQAQKTYEANFGD-LPYGDITLEETKAFI 90

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P+  D+L AGFPCQ FS AG
Sbjct: 91  PEKFDILCAGFPCQAFSIAG 110


>gi|145638078|ref|ZP_01793692.1| putative type II 5-cytosoine methyltransferase [Haemophilus
          influenzae PittHH]
 gi|145268726|gb|EDK08715.1| putative type II 5-cytosoine methyltransferase [Haemophilus
          influenzae PittHH]
          Length = 226

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L +  LF G GG+ L  +Q  FN       ++++ +  +V+TY+ N     + GDI KI 
Sbjct: 6  LTVISLFSGAGGLDLGFKQAGFN-----LIWANDFDKDAVETYKENIGKECVLGDITKIP 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
          + +IP+ DV++ GFPCQ FS A
Sbjct: 61 SSEIPNADVMIGGFPCQGFSMA 82


>gi|295110825|emb|CBL24778.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 311

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ L L Q  N    E  ++++I+  +V TY+ N  + ++  DI  I  
Sbjct: 1  MKIISLFSGAGGLDLGLIQAGN----EVIWANDIDKDAVATYRENIGDHIVCDDIKNINI 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           D+P+ DV++ GFPCQ FS A
Sbjct: 57 YDLPEADVVVGGFPCQGFSLA 77


>gi|325912423|ref|ZP_08174818.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
 gi|325475765|gb|EGC78936.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
          Length = 314

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +C +SSE + Y+ +TY+ NF + +  GDI +I  ++IPDHD+L AGFPCQ FS +G
Sbjct: 13 QCVYSSEWDKYAQETYKMNFGD-VPEGDITQIDEKNIPDHDILCAGFPCQAFSISG 67


>gi|48243617|gb|AAT40769.1| putative DNA methylase [Haemophilus influenzae]
          Length = 293

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L +  LF G GG+ L  +Q  FN       ++++ +  +V+TY+ N     + GDI KI 
Sbjct: 5  LTVISLFSGAGGLDLGFKQAGFN-----LIWANDFDKDAVETYKENIGKECVLGDITKIP 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
          + +IP+ DV++ GFPCQ FS A
Sbjct: 60 SSEIPNADVMIGGFPCQGFSMA 81


>gi|228472108|ref|ZP_04056874.1| cytosine-specific methyltransferase NlaX [Capnocytophaga
          gingivalis ATCC 33624]
 gi|228276311|gb|EEK15035.1| cytosine-specific methyltransferase NlaX [Capnocytophaga
          gingivalis ATCC 33624]
          Length = 367

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++   ++  E +FS EI+  ++  Y+ NFP+    GDI  ++ 
Sbjct: 1  MKIIDLFSGIGGFALGFQRA-GYQFTEHYFS-EIDKQAIANYKYNFPHAKYIGDITTLQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DI   D++  G PCQ FS AG
Sbjct: 59 ADIAGADIITFGSPCQDFSLAG 80


>gi|166368611|ref|YP_001660884.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090984|dbj|BAG05692.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 464

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 12/87 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIA 57
           +  DLF GIGG R+ LE+        C   SEI+  +++ YQ NF      N + FGD++
Sbjct: 33  RFIDLFAGIGGFRIALEKLGGR----CLGYSEIDKQAIQVYQQNFISYLNSNEIAFGDVS 88

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           KI   ++PD+ D ++ G PCQP+S AG
Sbjct: 89  KI--SNLPDNLDFIVGGVPCQPWSVAG 113


>gi|57506196|ref|ZP_00372116.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
          RM3195]
 gi|57015523|gb|EAL52317.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
          RM3195]
          Length = 315

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGGI L     F     +  ++ E++  +  TY+AN  + +I  D+AK+  
Sbjct: 1  MKIGSLFAGIGGIELG----FKKAGFKTAWAVELDSKACITYKANHKHKIINNDLAKVDL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +   D+L AGFPCQ FS AG
Sbjct: 57 KSLSKIDILTAGFPCQAFSVAG 78


>gi|326567273|gb|EGE17393.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326568220|gb|EGE18302.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC8]
          Length = 354

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN        +  E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGNFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDGDIPKADIVIGGFPCQDFSLAG 110


>gi|332879681|ref|ZP_08447373.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332682372|gb|EGJ55277.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 299

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++   +   E +FS EI+ +++  Y+ NFPN    GDI  I+ 
Sbjct: 1  MKIIDLFSGIGGFSLGFQRA-GYNFTEHYFS-EIDKHAIANYKYNFPNAKHIGDITTIQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   D++  G PC  FS AG
Sbjct: 59 ANLAGADIITFGSPCVDFSVAG 80


>gi|326566077|gb|EGE16234.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC1]
          Length = 354

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN        +  E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGDFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDTDIPKADIVIGGFPCQDFSLAG 110


>gi|326559503|gb|EGE09926.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 7169]
          Length = 354

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN        +  E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGNFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDGDIPKADIVIGGFPCQDFSLAG 110


>gi|326563801|gb|EGE14052.1| type II DNA modification enzyme [Moraxella catarrhalis 46P47B1]
 gi|326566814|gb|EGE16953.1| type II DNA modification enzyme [Moraxella catarrhalis 103P14B1]
 gi|326576727|gb|EGE26634.1| type II DNA modification enzyme [Moraxella catarrhalis 101P30B1]
          Length = 327

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ +
Sbjct: 3  LKFMDFCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNS 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD DV+LAGFPCQ FS  G
Sbjct: 59 DDLPDFDVMLAGFPCQTFSIVG 80


>gi|326567346|gb|EGE17461.1| type II DNA modification enzyme [Moraxella catarrhalis BC1]
          Length = 327

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ +
Sbjct: 3  LKFMDFCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNS 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD DV+LAGFPCQ FS  G
Sbjct: 59 DDLPDFDVMLAGFPCQTFSIVG 80


>gi|268611036|ref|ZP_06144763.1| prophage LambdaSa2, type II DNA modification methyltransferase,
          putative [Ruminococcus flavefaciens FD-1]
          Length = 425

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAK 58
          M++  D+F GIGG R  LE+       EC    EI+ ++ + Y+A +  +  + + D  K
Sbjct: 1  MIRYLDMFAGIGGFRSGLERV---GGFECVGYCEIDKFAKQAYEALYDTSKEVYYDDATK 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  +D+PD D++  GFPCQ FS AG
Sbjct: 58 IVPEDLPDIDLICGGFPCQSFSIAG 82


>gi|306828113|ref|ZP_07461376.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
 gi|304429650|gb|EFM32696.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
          Length = 214

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQANFPNTLIFGDI 56
          MLK+ + F GIG  R+ L      RN+    E    +EI+ +++K+Y+A        GDI
Sbjct: 3  MLKVFEAFAGIGTQRMAL------RNIGIPHEVVAIAEIDKFAIKSYEAIHGPVNNLGDI 56

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +KI   DIPDHD+    FPCQ  S AG
Sbjct: 57 SKINPDDIPDHDLFTYSFPCQDISVAG 83


>gi|159026722|emb|CAO89036.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 455

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 12/87 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIA 57
           +  DLF GIGG R+ LE+        C   SEI+  +++ YQ NF      + + FGD++
Sbjct: 25  RFVDLFAGIGGFRIALEKLGGR----CLGYSEIDKQAIQVYQQNFISYLNSDEIAFGDVS 80

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           KI   ++PD+ D+++ G PCQP+S AG
Sbjct: 81  KI--SNLPDNLDLIVGGVPCQPWSVAG 105


>gi|265751236|ref|ZP_06087299.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270294601|ref|ZP_06200803.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238132|gb|EEZ23582.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270276068|gb|EFA21928.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 466

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+   F G GG+ L  EQ       E  +++E +    KTYQ N PNT L   DI K+K
Sbjct: 1  MKVASFFAGCGGLDLGFEQA----GYEVVWANEFDEAIHKTYQFNHPNTYLCKSDIRKLK 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIPD D  + G PCQ +S+ G
Sbjct: 57 GEDIPDCDGFIGGPPCQSWSEGG 79


>gi|254282099|ref|ZP_04957067.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
 gi|219678302|gb|EED34651.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
          Length = 356

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 20/94 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY---QANFPNTLIFGDIAK 58
            K  DLF GIGG RL LE     R+V   F+SE +  + + Y     ++P    FGDI K
Sbjct: 28  FKFIDLFAGIGGFRLGLEAQ-GGRSV---FASEWDKTAKEYYFRNHGDYP----FGDINK 79

Query: 59  IK---------TQDIPDHDVLLAGFPCQPFSQAG 83
                       Q +PDHD+L  GFPCQPFS AG
Sbjct: 80  FTGEHLSDEQVDQLVPDHDLLAGGFPCQPFSIAG 113


>gi|167751358|ref|ZP_02423485.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
 gi|167655604|gb|EDR99733.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
          Length = 316

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          + I  LF GIGGI L  EQ          ++++IN  + KTY+ NFPN  ++  DI  + 
Sbjct: 1  MTIGSLFAGIGGIDLGFEQA----GFRAIWANDINKNACKTYRYNFPNVNLYECDIRSLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +   DVL AGFPCQPFS  G
Sbjct: 57 PSILQPVDVLTAGFPCQPFSVCG 79


>gi|84497092|ref|ZP_00995914.1| cytosine-specific DNA methylase [Janibacter sp. HTCC2649]
 gi|84381980|gb|EAP97862.1| cytosine-specific DNA methylase [Janibacter sp. HTCC2649]
          Length = 499

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ--- 62
           DLF GIGG         +H    C + SEI+  + +TY  N+ + L       + T    
Sbjct: 39  DLFAGIGG----FHAMLDHAGGRCVYVSEIDREARQTYVRNWVDPLPTAQQPIVNTDITI 94

Query: 63  --------DIPDHDVLLAGFPCQPFSQAG 83
                   D+P+HDVL AGFPCQPFS++G
Sbjct: 95  ATPDDAPVDVPNHDVLAAGFPCQPFSKSG 123


>gi|256819720|ref|YP_003140999.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581303|gb|ACU92438.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 389

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLF GIGG  L  ++   H     F  SEI+ +++  Y+ NFPN    GDI  +  
Sbjct: 1  MKLIDLFSGIGGFSLGFQRAGYHFTEHYF--SEIDKHAIANYKNNFPNAKYIGDITTLHG 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D++  G PCQ FS AG
Sbjct: 59 GDFTGIDIITFGSPCQDFSLAG 80


>gi|219122422|ref|XP_002181544.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406820|gb|EEC46758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 495

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           +LF GIGG  + LE        EC F SEI+      Y  NF      GDI +++ +D P
Sbjct: 145 ELFAGIGGFGVALESLGG----ECVFCSEIDEVCRTVYALNFSTKNQHGDIYEVRDRDFP 200

Query: 66  DH-DVLLAGFPCQPFS 80
              D+L+ GFPCQPFS
Sbjct: 201 SQLDLLVGGFPCQPFS 216


>gi|309378580|emb|CBX22758.1| DNA cytosine methyltransferase M.NlaIV [Neisseria lactamica
          Y92-1009]
          Length = 380

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 40 VKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  + N+P+ + +GDI KI+T DIPD D+LLAGFPCQ FS AG
Sbjct: 1  MEVLKQNYPDEVPYGDIPKIETGDIPDFDILLAGFPCQAFSFAG 44


>gi|187778292|ref|ZP_02994765.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
          15579]
 gi|187771917|gb|EDU35719.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
          15579]
          Length = 355

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  D+FCGIG +R+  EQ  +    EC +S E + +  K Y   F      GDI K + 
Sbjct: 1  MKFIDMFCGIGTVRMGFEQAGH----ECVYSIEWDKWKRKIYSIIFGGEPEGGDITKCRA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D    G PCQ FS AG
Sbjct: 57 NELPKSDCWCFGAPCQDFSVAG 78


>gi|239625135|ref|ZP_04668166.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
          1_7_47_FAA]
 gi|239519365|gb|EEQ59231.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
          1_7_47FAA]
          Length = 301

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++    F GIGGI L LE++     +E  +  EI  +  K  + ++PN  +  DI K+  
Sbjct: 1  MRAASFFSGIGGIDLGLEKS----GIEIVYQCEILSFGQKVLKKHWPNIPLSQDITKLTG 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          +DIPD ++   GFPCQ  S A
Sbjct: 57 KDIPDAEIFAGGFPCQDLSLA 77


>gi|167854713|ref|ZP_02477492.1| cell division protein MukB [Haemophilus parasuis 29755]
 gi|167854127|gb|EDS25362.1| cell division protein MukB [Haemophilus parasuis 29755]
          Length = 361

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG RL +E+   +    C FSSEI+  + KTY  NF     +GDI   +T+  I
Sbjct: 41  DLFAGIGGFRLAMEKLGGY----CVFSSEIDENAQKTYATNFGEKP-YGDITLEETKRLI 95

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P   D+L AGFPCQ FS AG
Sbjct: 96  PTTFDILCAGFPCQAFSIAG 115


>gi|298504551|gb|ADI83274.1| DNA cytosine methyltransferase [Geobacter sulfurreducens KN400]
          Length = 428

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DLFCG GG+ L   +  NH     + +++ N Y+ +TY  NF N  + GDI +I  +
Sbjct: 36  RVIDLFCGAGGMTLGFTKFTNHVFTPVW-ANDFNAYAARTYNRNFGNHCVVGDIVEILER 94

Query: 63  D---IPDHDVLLAGFPCQPFS 80
               IP  DV++ G PCQ FS
Sbjct: 95  PETVIPKADVVIGGPPCQGFS 115


>gi|225076313|ref|ZP_03719512.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
 gi|224952437|gb|EEG33646.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
          Length = 359

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
           DLF GIGG R+ ++        +C FSSE +  + +TY ANF   + FGDI   +T+  I
Sbjct: 41  DLFAGIGGFRIAMQSL----GGKCLFSSEWDDKAQQTYAANF-GEIPFGDITTEETKSHI 95

Query: 65  P-DHDVLLAGFPCQPFSQAG 83
           P + D+L AGFPCQ FS AG
Sbjct: 96  PKEFDILCAGFPCQAFSIAG 115


>gi|82752078|ref|YP_417819.1| DNA modification methylase [Staphylococcus aureus RF122]
 gi|82657609|emb|CAI82057.1| DNA modification methylase [Staphylococcus aureus RF122]
          Length = 402

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP 65
           F G+GGI L   QT   R V   +++E +  +  TY+ NF N +L   DI  +KT +IP
Sbjct: 18 FFSGVGGIELGFHQTNKFRVV---YANEFDKNAQITYENNFNNVSLDCRDIHDVKTSEIP 74

Query: 66 DHDVLLAGFPCQPFSQAG 83
            DV++ GFPCQ FS AG
Sbjct: 75 MSDVIVGGFPCQAFSIAG 92


>gi|332710136|ref|ZP_08430089.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332351094|gb|EGJ30681.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 370

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          L  T LF G GG+ +  E   F H      +S++I+ +SVKT + N P   +   DI ++
Sbjct: 3  LSFTSLFSGAGGLDIGFEMAGFQH-----LYSTDIDTWSVKTLRNNRPEWDVEEADIREL 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +D+PD DV+LAG PCQ FS  G
Sbjct: 58 SERDLPDSDVILAGVPCQGFSLGG 81


>gi|41019146|sp|P09389|MTBB_BPSPB RecName: Full=Modification methylase SPBetaI; Short=M.SPBetaI;
          AltName: Full=Cytosine-specific methyltransferase
          SPBetaI
          Length = 257

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N   TL  GD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+K K  +IP  D+L +GFPC  FS AG
Sbjct: 58 ISKAKKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|208289|gb|AAA72678.1| Mtase protein (ttg start codon) [synthetic construct]
          Length = 474

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N   TL  GD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+K K  +IP  D+L +GFPC  FS AG
Sbjct: 58 ISKAKKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|9630267|ref|NP_046694.1| modification methylase [Bacillus phage SPBc2]
 gi|16079084|ref|NP_389907.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|221309931|ref|ZP_03591778.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221314254|ref|ZP_03596059.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. NCIB 3610]
 gi|221319176|ref|ZP_03600470.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. JH642]
 gi|221323451|ref|ZP_03604745.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. SMY]
 gi|56405062|sp|P68585|MTBP_BACSU RecName: Full=Phi-3T prophage-derived modification methylase
          Phi3TI; Short=M.Phi3TI; AltName: Full=Cytosine-specific
          methyltransferase Phi3TI
 gi|56405063|sp|P68586|MTBP_BPPHT RecName: Full=Modification methylase Phi3TI; Short=M.Phi3TI;
          AltName: Full=Cytosine-specific methyltransferase
          Phi3TI
 gi|7433506|pir||T12906 modification methylase - Bacillus subtilis phage SPBc2
 gi|215471|gb|AAA32352.1| methyltransferase (ttg start codon) [Bacillus phage phi3T]
 gi|2634418|emb|CAB13917.1| putative SP-beta prophage DNA (cytosine-5-)-methyltransferase
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025620|gb|AAC13115.1| modification methylase [Bacillus phage SPbeta]
          Length = 443

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N   TL  GD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+K K  +IP  D+L +GFPC  FS AG
Sbjct: 58 ISKAKKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|315446158|ref|YP_004079037.1| DNA-methyltransferase Dcm [Mycobacterium sp. Spyr1]
 gi|315264461|gb|ADU01203.1| DNA-methyltransferase Dcm [Mycobacterium sp. Spyr1]
          Length = 365

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          LK+ DLF G GG    +   F  +  +  FS E+N ++  TY ANF    IF GDI +  
Sbjct: 5  LKLIDLFAGCGG----MTAGFKPQGFDPVFSVELNLHAAATYAANFGEDHIFWGDIDEAL 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P+ DV++ G PCQ FS  G
Sbjct: 61 KGEVPEADVVIGGPPCQGFSNLG 83


>gi|332881189|ref|ZP_08448845.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332680863|gb|EGJ53804.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 367

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++  +++  E +FS EI+ +++  Y+ NFPN    GDI  I+ 
Sbjct: 1  MKIIDLFSGIGGFSLGFQRA-SYQFTEHYFS-EIDKHAIANYKYNFPNAKHIGDITTIQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   D++  G PC  FS AG
Sbjct: 59 ANLAGADIITFGSPCVDFSVAG 80


>gi|218900598|ref|YP_002449009.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218544695|gb|ACK97089.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++K+  LF G GG+ L   Q  +    E  +++++   + +TY+ N  N ++  D+ ++ 
Sbjct: 3  IMKVISLFSGAGGMDLGFIQAGH----EIIWANDLYEDAAETYKKNIGNHIVLKDLKEVD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
          T +IPD D+++ GFPCQ FS A
Sbjct: 59 TNNIPDGDIVIGGFPCQGFSVA 80


>gi|237742049|ref|ZP_04572530.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
 gi|229429697|gb|EEO39909.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
          Length = 385

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----K 58
          K  DLF GIGGIR   E T    N+    S+EI+ Y+ +TY+  F N   F D++    K
Sbjct: 8  KTIDLFSGIGGIRKGFELTGFFENI---ISAEIDKYACETYKHLF-NENPFNDVSSEEFK 63

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK + + ++D+LLAGFPCQ FS AG
Sbjct: 64 IKLESL-EYDILLAGFPCQSFSIAG 87


>gi|1171045|sp|P09915|MTBR_BPRH1 RecName: Full=Modification methylase Rho11sI; Short=M.Rho11sI;
          AltName: Full=Bsu P11s; AltName: Full=Cytosine-specific
          methyltransferase Rho11sI
 gi|579194|emb|CAA28869.1| unnamed protein product [Bacillus phage rho11s]
          Length = 503

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N    L FGD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVEYELVGFSEIDKYAIKSYCAIHNADEQLNFGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 58 VSKIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|329769727|ref|ZP_08261128.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
 gi|328838089|gb|EGF87707.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
          Length = 406

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          +   F G+GGI L  E+T   R V   +++EI+  +  TY+ NFPN  +   DI ++K +
Sbjct: 12 VAAFFSGVGGIELGFEKTNKFRVV---YANEIDKNARITYKLNFPNVFLDPRDIHEVKPE 68

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          +I +   DV++ GFPCQ FS AG
Sbjct: 69 EIKEEKLDVIVGGFPCQAFSIAG 91


>gi|313667088|gb|ADR72987.1| M2.BsmFI [Geobacillus stearothermophilus]
          Length = 365

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L     F +      ++ +I+  +V TY+ N  + +I GDI KI+ +D
Sbjct: 5  VVSLFSGGGGLDLG----FKNSGFNIIWAIDIDKDAVSTYKENLGDHIILGDITKIQEKD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IP  DV++ G PCQ FS  G
Sbjct: 61 IPKADVVIGGPPCQSFSLVG 80


>gi|261326799|emb|CBH09772.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 621

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 21/96 (21%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------------FPNTL 51
           ++LF GIG  R+ LE+       +C F+ E  P++   Y AN              P T 
Sbjct: 229 SELFAGIGMFRVGLERIGG----KCVFAVECAPHARSVYHANHHLPRRSSCGNEALPATR 284

Query: 52  ----IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
               + GDI  + +   P HDVL AGFPCQ F++AG
Sbjct: 285 RPVPLVGDITTVPSHYFPHHDVLTAGFPCQSFAKAG 320


>gi|194017229|ref|ZP_03055841.1| site-specific DNA-methyltransferase [Bacillus pumilus ATCC 7061]
 gi|194011097|gb|EDW20667.1| site-specific DNA-methyltransferase [Bacillus pumilus ATCC 7061]
          Length = 327

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  PY  K    NFPN  +F D+  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPYCQKLLNQNFPNVPVFDDVRTLNR 56

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          Q + D          D++  GFPCQP+S AG
Sbjct: 57 QLLEDKGVIEPNGTIDIISGGFPCQPYSSAG 87


>gi|127431|sp|P00476|MTBS_BPSPR RecName: Full=Modification methylase SPRI; Short=M.SPRI; AltName:
          Full=Cytosine-specific methyltransferase SPRI
 gi|224091|prf||1010250A methyltransferase
          Length = 439

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y+VK++ A  N    L FGD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 58 VSKIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|216171|gb|AAA32604.1| DNA methyltransferase [Bacillus phage SPR]
          Length = 439

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y+VK++ A  N    L FGD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 58 VSKIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|9622224|gb|AAF89681.1| cytosine-specific methyltransferase [Bacillus sp. LU11]
          Length = 365

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L     F +      ++ +I+  +V TY+ N  + +I GDI KI+ +D
Sbjct: 5  VVSLFSGGGGLDLG----FKNSGFNIIWAIDIDKDAVLTYKENLGDHIILGDITKIQEKD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IP+ DV++ G PCQ FS  G
Sbjct: 61 IPEADVVIGGPPCQSFSLVG 80


>gi|160939012|ref|ZP_02086363.1| hypothetical protein CLOBOL_03906 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437975|gb|EDP15735.1| hypothetical protein CLOBOL_03906 [Clostridium bolteae ATCC
          BAA-613]
          Length = 168

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +     F +   E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGI----AFKNAGYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|90408525|ref|ZP_01216682.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
 gi|90310344|gb|EAS38472.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
          Length = 380

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 20/101 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           K+  LF G+GG+ L  +  FN +   +  +++E++  ++KTY+ NF + +I GDI KI  
Sbjct: 4   KVGSLFAGVGGVCLGFKSAFNEKGGYQLIWANELDEQAIKTYRCNFEHNMIPGDIEKIVK 63

Query: 60  ----------------KTQDIPDH-DVLLAGFPCQPFSQAG 83
                           K Q +    DVL AGFPCQ FS AG
Sbjct: 64  PERAKADGEEALFAQKKMQMLAQPIDVLTAGFPCQAFSIAG 104


>gi|311064356|ref|YP_003971081.1| cytosine methyl transferase Dcm [Bifidobacterium bifidum PRL2010]
 gi|310866675|gb|ADP36044.1| Dcm Cytosine methyl transferase [Bifidobacterium bifidum PRL2010]
          Length = 326

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++  LF G GG+ L     F     +  ++++ +  +V+TY+AN  +  +  DI+++   
Sbjct: 14 RVVSLFSGAGGLDLG----FKLAGFQLAWANDFDKDAVETYRANIDDHCVCADISEVSDH 69

Query: 63 DIPDHDVLLAGFPCQPFSQA 82
          DIPD D+++ GFPCQ FS A
Sbjct: 70 DIPDCDIMIGGFPCQGFSMA 89


>gi|220903553|ref|YP_002478865.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219867852|gb|ACL48187.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
          Length = 308

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F        +++++   +VKTY+ N  + ++  DI+++ T
Sbjct: 1  MKVVSLFSGAGGLDLG----FKMAGHSIIWANDVYEDAVKTYRMNIGDHILCKDISQVTT 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           ++PD D+++ GFPCQ FS A
Sbjct: 57 AEVPDSDIIIGGFPCQGFSVA 77


>gi|25011412|ref|NP_735807.1| hypothetical protein gbs1370 [Streptococcus agalactiae NEM316]
 gi|24412950|emb|CAD47029.1| unknown [Streptococcus agalactiae NEM316]
          Length = 450

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K  DLF GIGG RL LE     +  EC    EI+ ++ K+Y+A F     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLES----QGHECLGFCEIDKFARKSYKAIFETEGEVEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRKFRGQVDIICVGFPCQAFSLAG 84


>gi|257870038|ref|ZP_05649691.1| DNA methylase [Enterococcus gallinarum EG2]
 gi|257804202|gb|EEV33024.1| DNA methylase [Enterococcus gallinarum EG2]
          Length = 401

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          +   F G+GGI L  EQT   R V   +++E +  +  TY  N+P T L   DI ++ ++
Sbjct: 15 VAAFFSGVGGIELGFEQTGKFRVV---YANEFDKNAQITYAENYPQTPLDKRDIHEVDSK 71

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  D+++ GFPCQ FS AG
Sbjct: 72 EVPVSDLIVGGFPCQAFSIAG 92


>gi|317056067|ref|YP_004104534.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
 gi|315448336|gb|ADU21900.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
          Length = 425

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M+K  D+F GIGG R  LE+       EC    E + ++ + Y+A +     L F D  K
Sbjct: 1  MIKFFDIFAGIGGFRSGLEKVGGF---ECVGYCECDKFAKQAYEALYDTRKELYFDDARK 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  +++PD D++  GFPCQ FS AG
Sbjct: 58 IDPEELPDIDLICGGFPCQSFSIAG 82


>gi|331027909|ref|YP_004421459.1| DNA methylase [Synechococcus phage S-CBS2]
 gi|294805522|gb|ADF42361.1| DNA methylase [Synechococcus phage S-CBS2]
          Length = 286

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 35/54 (64%)

Query: 30 FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +F+SEI+ Y+++  Q N+PNT   G I  +K + +P  D+L  G PCQ FS AG
Sbjct: 27 YFASEIDKYAIQVTQKNYPNTKQIGSITDVKGEYLPKIDLLFGGSPCQSFSNAG 80


>gi|332162719|ref|YP_004299296.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666949|gb|ADZ43593.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859459|emb|CBX69803.1| hypothetical protein YEW_FM23370 [Yersinia enterocolitica W22703]
          Length = 365

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           K+  LF G GG+ L        L + +     E  +++E NP +VKTY+ NF + ++ GD
Sbjct: 61  KLISLFSGCGGMDLGFCGDFSVLNKKYKKTKFEIIWANEFNPNAVKTYKKNFSHNIVEGD 120

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I ++      + DVL+ GFPCQ  S  G
Sbjct: 121 IWELIDSVPTECDVLIGGFPCQDISING 148


>gi|169823657|ref|YP_001691160.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832277|dbj|BAG09192.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 332

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          K+  LF G+GGI +  E+       E  +++EI+  + +TY+ NFP   +   DI  ++ 
Sbjct: 4  KVISLFAGVGGIDIGFEKA----GFETIYANEIDEKARQTYKLNFPEVFLDSRDIRDVQK 59

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           DIP +  V+++GFPCQ FS AG
Sbjct: 60 DDIPHEASVVVSGFPCQSFSIAG 82


>gi|322514130|ref|ZP_08067198.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
 gi|322120016|gb|EFX92002.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
          Length = 356

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LFCG GG+ L  E+       E   ++E +     T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFCGCGGLDLGFEKA----GFEVPVANEYDKTIWATFKANHPKTRLIEGDIRNIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|78778049|ref|YP_394364.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498589|gb|ABB45129.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 435

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------ 54
           ++  +LF G+GG RL LE+T   +++    +S++  P S KT  A+      FG      
Sbjct: 26  IRTVELFAGVGGFRLGLEKTSLENKSYSVVWSNQWEP-STKTQHASDIYCARFGYENHSN 84

Query: 55  -DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI+ +    IPDHD+L+ GFPCQ +S A
Sbjct: 85  DDISTVDASVIPDHDLLVGGFPCQDYSVA 113


>gi|238793797|ref|ZP_04637418.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726861|gb|EEQ18394.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 365

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           K+  LF G GG+ L        L + +     E  +++E NP +VKTY+ NF + ++ GD
Sbjct: 61  KLISLFSGCGGMDLGFCGNFSFLNKEYKKTKFEIIWANEFNPNAVKTYKKNFSHNIVEGD 120

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I ++      + DVL+ GFPCQ  S  G
Sbjct: 121 IWELIDSVPTECDVLIGGFPCQDISING 148


>gi|326560963|gb|EGE11328.1| type II DNA modification enzyme [Moraxella catarrhalis 7169]
 gi|326575187|gb|EGE25115.1| type II DNA modification enzyme [Moraxella catarrhalis CO72]
          Length = 322

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ + D+PD
Sbjct: 3  FCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNSDDLPD 58

Query: 67 HDVLLAGFPCQPFSQAG 83
           DV+LAGFPCQ FS  G
Sbjct: 59 FDVMLAGFPCQTFSIVG 75


>gi|291525029|emb|CBK90616.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 337

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +     F +   E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGI----AFKNAGYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|239625877|ref|ZP_04668908.1| methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520107|gb|EEQ59973.1| methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 338

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +     F +   E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGI----AFKNAGYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|311977229|gb|ADQ20489.1| M.AspCNI [Acinetobacter sp. 1690]
          Length = 327

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF G GG+ L   Q       +  ++++IN ++ KTY  N  + ++ GDI +I  
Sbjct: 4  LTAISLFSGCGGMDLGFVQA----GFDVLWANDINGFACKTYAHNIGDHIVHGDITEIDY 59

Query: 62 QDIPDHDVLLAGFPCQPFS 80
          Q IP  D+++ GFPCQ FS
Sbjct: 60 QSIPTADIIIGGFPCQDFS 78


>gi|309389435|gb|ADO77315.1| DNA-cytosine methyltransferase [Halanaerobium praevalens DSM
          2228]
          Length = 328

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          ML   DLF G GG+    E+       E  FS E NP   +TY+ NFP N LI  DIA I
Sbjct: 1  MLNYIDLFSGAGGMSCGFEKA----GFENIFSLEFNPEFAETYKKNFPKNNLIVKDIADI 56

Query: 60 KTQDIP------DHDVLLAGFPCQPFSQAG 83
             ++       D DV++ G PCQ FS AG
Sbjct: 57 SEPEVKKIIGETDVDVIVGGPPCQGFSLAG 86


>gi|219870523|ref|YP_002474898.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219690727|gb|ACL31950.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 350

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
           DLF G GG RL +E+   +    C FSSEI+  + KTY  NF     +GDI   +T+ + 
Sbjct: 30  DLFAGFGGFRLAMEKLGGY----CVFSSEIDENAQKTYATNFGEKP-YGDITLEETKRLI 84

Query: 65  -PDHDVLLAGFPCQPFSQAG 83
               D+L AGFPCQ FS AG
Sbjct: 85  PTTFDILCAGFPCQAFSIAG 104


>gi|320108256|ref|YP_004183846.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319926777|gb|ADV83852.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 347

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF GIGGI L  E+    R V   +  EINPY  +    NFP+   + DI +    +
Sbjct: 6  VGSLFAGIGGIDLGFERA-GFRTV---WQVEINPYCQRVLAKNFPHAERYADIRECGAHN 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +   DV++ GFPCQ  S AG
Sbjct: 62 LKPVDVIVGGFPCQDISNAG 81


>gi|125974805|ref|YP_001038715.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
 gi|125715030|gb|ABN53522.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
          Length = 334

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ + LE        +  ++++I+  +  TY+      ++ GDIAKI   D
Sbjct: 17 VASLFAGAGGLDMGLELA----GFKTVWANDIDKDACATYRLWSQADVVQGDIAKIDYSD 72

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD DV+  GFPCQ FS AG
Sbjct: 73 VPDTDVITGGFPCQGFSLAG 92


>gi|72386611|ref|XP_843730.1| cytosine-specific DNA methylase [Trypanosoma brucei TREU927]
 gi|62175408|gb|AAX69550.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei]
 gi|70800262|gb|AAZ10171.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 621

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 21/96 (21%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------------FPNTL 51
           ++LF G+G  R+ LE+       +C F+ E  P++   Y AN              P T 
Sbjct: 229 SELFAGMGMFRVGLERIGG----KCVFAVECAPHARSVYHANHHLPRRNSCGNEALPATR 284

Query: 52  ----IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
               + GDI  + +   P HDVL AGFPCQ F++AG
Sbjct: 285 RPVPLVGDITTVPSHYFPHHDVLTAGFPCQSFAKAG 320


>gi|216165|gb|AAA32601.1| methyltransferase (ttg start codon) [Bacillus phage SPbeta]
          Length = 143

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N   TL  GD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVDYELIGFSEIDKYAIKSYCAIHNVSETLNVGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+K K  +IP  D+L +GFPC  FS AG
Sbjct: 58 ISKAKKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|291087089|ref|ZP_06345376.2| modification methylase HpaII [Clostridium sp. M62/1]
 gi|291076158|gb|EFE13522.1| modification methylase HpaII [Clostridium sp. M62/1]
          Length = 490

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 17/90 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++  DL  GIGGIR   E   +  NV    S+EI+ Y+ +TY+       +FGD A+   
Sbjct: 20  MRTIDLCSGIGGIRRGFELAGDFENV---LSAEIDKYACQTYEH------LFGDDARNDV 70

Query: 62  QD--------IPDHDVLLAGFPCQPFSQAG 83
            +          D+DVLLAGFPCQPFS+ G
Sbjct: 71  TNDEFRKLVCRTDYDVLLAGFPCQPFSKIG 100


>gi|319779704|ref|YP_004130617.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109728|gb|ADU92474.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 339

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
          +DLF G+GG R+     F     +C FS E N ++ +TY  NF   L + DI  I    +
Sbjct: 15 SDLFAGMGGFRV----AFESLGAKCVFSCENNTFAKETYWINF-KELTYDDIYTIPMDIV 69

Query: 65 PDHDVLLAGFPCQPFS 80
          PDHD++ AGFP +  S
Sbjct: 70 PDHDIMCAGFPPETIS 85


>gi|49476998|ref|YP_035184.1| modification methylase HpaII (cytosine-specific methyltransferase
          HpaII) [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|49328554|gb|AAT59200.1| modification methylase HpaII (Cytosine-specific methyltransferase
          HpaII) [Bacillus thuringiensis serovar konkukian str.
          97-27]
          Length = 373

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI 59
          K  DLF GIGGIR   E T    NV    S+EI+ Y+ +TY+  +   P   +     K 
Sbjct: 4  KTLDLFAGIGGIRRGFELTGRFENV---LSAEIDQYACQTYEHLYSENPKNDVTSAEFKE 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K + +  +DVLL GFPCQ FS AG
Sbjct: 61 KVEKL-TYDVLLGGFPCQAFSTAG 83


>gi|229131851|ref|ZP_04260720.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
 gi|228651598|gb|EEL07564.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
          Length = 427

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N +  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFDVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+   Q+IP+HD+L+ GFPCQ +S A
Sbjct: 58 KDIAE-AWQEIPEHDLLVGGFPCQDYSVA 85


>gi|17228429|ref|NP_484977.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17130280|dbj|BAB72891.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 477

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K    F G  G+ L  E+      +E   + E++ Y  +T  AN P+  + GDIA    
Sbjct: 73  VKAISFFSGAMGLDLGFEKA----GIEILLACEVDKYCRQTIVANKPDIALLGDIAAYSA 128

Query: 62  QDIPDH--------DVLLAGFPCQPFSQAG 83
           QDI DH        D++L G PCQ FS AG
Sbjct: 129 QDILDHANLAKEDVDIMLGGPPCQAFSTAG 158


>gi|302870498|ref|YP_003839135.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
 gi|302573357|gb|ADL49559.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
          Length = 383

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          +F G GG+ L  EQT   + V   ++++I P++V+TY+ N    ++  DIA++   D+P 
Sbjct: 13 MFSGCGGMDLGAEQT---KRVGVVWANDIEPWAVETYRRNLGRHIVAEDIAELDVPDVP- 68

Query: 67 HDVLLAGFPCQPFS 80
           D+LLAG PCQ +S
Sbjct: 69 CDILLAGPPCQDYS 82


>gi|325298663|ref|YP_004258580.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318216|gb|ADY36107.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 463

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +K+   F G GG+ L  EQ      +E  ++++I     +TYQ N PNT++   DI ++ 
Sbjct: 1  MKVASFFSGCGGLDLGFEQA----GIEVIWANDIEASIHETYQYNHPNTILCKSDIRELH 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D  + G PCQ +S+ G
Sbjct: 57 ASDIPDCDGFIGGPPCQSWSEGG 79


>gi|119512301|ref|ZP_01631388.1| DNA modification methylase [Nodularia spumigena CCY9414]
 gi|119463081|gb|EAW44031.1| DNA modification methylase [Nodularia spumigena CCY9414]
          Length = 502

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQD 63
          DLF GIGG ++ L     H        SEIN  ++KTY  NF    +   GDI KIK  +
Sbjct: 10 DLFAGIGGFKMALSNNGGH----SLGFSEINQDAIKTYCDNFQIEPSYNLGDITKIK--E 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P HD+L AG PCQ +S AG
Sbjct: 64 LPPHDLLTAGVPCQSWSIAG 83


>gi|325298704|ref|YP_004258621.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318257|gb|ADY36148.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 399

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHR-------NVECFFSSEINPYSVKTYQANFPNT-----L 51
          I  LF G GG+ L     F  R       N E  F+++ +  +   Y AN   T      
Sbjct: 5  IASLFSGCGGLDLGFTGGFTFRGQFYDRLNTEILFANDFDQDAQSCYNANPLLTNNGANC 64

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  DI  I   +IPD D+LLAGFPCQPFS AG
Sbjct: 65 LLADIRDIDANEIPDFDILLAGFPCQPFSNAG 96


>gi|228919775|ref|ZP_04083134.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839862|gb|EEM85144.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 442

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
           M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 16  MVKVVELFAGVGGFRLGLEA---NENFEIIWGNQWEPLTKAQHAFNCYATQFENKGIHEN 72

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DIA++  + IP+HD+L+ GFPCQ +S A
Sbjct: 73  KDIAEVWPE-IPEHDLLVGGFPCQDYSVA 100


>gi|229195244|ref|ZP_04322018.1| Modification methylase Sau3AI [Bacillus cereus m1293]
 gi|228588270|gb|EEK46314.1| Modification methylase Sau3AI [Bacillus cereus m1293]
          Length = 442

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
           M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 16  MVKVVELFAGVGGFRLGLEA---NENFEIIWGNQWEPLTKAQHAFNCYATQFENKGIHEN 72

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DIA++  + IP+HD+L+ GFPCQ +S A
Sbjct: 73  KDIAEVWPE-IPEHDLLVGGFPCQDYSVA 100


>gi|157311258|ref|YP_001469302.1| gp69 [Mycobacterium phage Tweety]
 gi|148540887|gb|ABQ86138.1| gp69 [Mycobacterium phage Tweety]
          Length = 261

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ + +EQ F  R V   +  E+NP + K     +P     GDI  +  
Sbjct: 1  MKIGSLFSGAGGLDIAVEQFFGARTV---WHCELNPAAAKVLAHRWPGVPNLGDITAVDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  GFPCQ  S AG
Sbjct: 58 STVEPVDILAGGFPCQDVSAAG 79


>gi|294673665|ref|YP_003574281.1| prophage PRU01 DNA methylase, C-5 cytosine-specific family
          [Prevotella ruminicola 23]
 gi|294471747|gb|ADE81136.1| prophage PRU01, DNA methylase, C-5 cytosine-specific family
          [Prevotella ruminicola 23]
          Length = 330

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +P   +T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFERA----GFEVPVANEFDPSIWETFEANHPKTKLIRGDIRNIK 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D P D D ++ G PCQ +S+AG
Sbjct: 57 ESDFPKDVDGIIGGPPCQSWSEAG 80


>gi|171911440|ref|ZP_02926910.1| DNA-cytosine methyltransferase [Verrucomicrobium spinosum DSM
          4136]
          Length = 292

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG  L  E+       +C +S EINP +       FP++  F D+ +    ++  
Sbjct: 18 LFAGIGGFELGFERA----GFQCSWSVEINPINRAVLADRFPHSRQFEDVRECGAHNLSP 73

Query: 67 HDVLLAGFPCQPFSQAG 83
           DVL AGFPCQ  S AG
Sbjct: 74 VDVLTAGFPCQDISAAG 90


>gi|301020988|ref|ZP_07185039.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|3660493|emb|CAA57706.1| M.EcoHK31I alpha polypeptide [Escherichia coli]
 gi|300398362|gb|EFJ81900.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 309

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K++  F GIGG  L LE+      +E  F  EIN +  K  + N+    +  DI ++   
Sbjct: 10 KVSSFFAGIGGFDLGLEKA----GMEVVFQCEINKFCQKVLRKNWSKVPLHTDITRLNAD 65

Query: 63 DIPDHDVLLAGFPCQPFSQA 82
          +IP+ +V   GFPCQ  S A
Sbjct: 66 EIPESNVWCGGFPCQDVSSA 85


>gi|328553026|gb|AEB23518.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
          amyloliquefaciens TA208]
          Length = 503

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N      FGD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQSNFGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 58 VSKIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|239999928|ref|ZP_04719852.1| NgoIM [Neisseria gonorrhoeae 35/02]
 gi|240116859|ref|ZP_04730921.1| NgoIM [Neisseria gonorrhoeae PID1]
 gi|240127204|ref|ZP_04739865.1| NgoIM [Neisseria gonorrhoeae SK-93-1035]
          Length = 278

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          Y+ANF     FGDI  I   DIPDHD+LLAGFPCQPFS AG
Sbjct: 2  YEANF-GEKPFGDINGIDPSDIPDHDILLAGFPCQPFSIAG 41


>gi|262038316|ref|ZP_06011702.1| modification methylase spri [Leptotrichia goodfellowii F0264]
 gi|261747667|gb|EEY35120.1| modification methylase spri [Leptotrichia goodfellowii F0264]
          Length = 318

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 8  FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          FC GIGG RL  E+        C    EI+  + KTYQ  + +   +GD+ K+  +++PD
Sbjct: 8  FCSGIGGGRLGFEKN----GFICVGHCEIDEKADKTYQLFYNDGRNYGDLMKVNPKELPD 63

Query: 67 HDVLLAGFPCQPFSQAG 83
           + L+AGFPCQ FS  G
Sbjct: 64 FNYLIAGFPCQTFSIVG 80


>gi|322411818|gb|EFY02726.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ +++K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFAMKSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFKQLRGQVDIICGGFPCQAFSLAG 84


>gi|125974232|ref|YP_001038142.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
 gi|125714457|gb|ABN52949.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
          Length = 483

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKTQD 63
          D F GIGG RL LE    H+   C    E + ++VK+Y+A F         D+ K+K++D
Sbjct: 5  DFFAGIGGFRLGLELA-GHK---CIGFCEKDKFAVKSYRAMFDTEGEWYADDVTKLKSED 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IP  D+   GFPCQ  S AG
Sbjct: 61 IPYADIWCFGFPCQDISVAG 80


>gi|329767116|ref|ZP_08258644.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
 gi|328837841|gb|EGF87466.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
          Length = 396

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIP 65
           F G+GGI L  E+T   R V   +++EI+  +  TY+ NFP+  +   DI ++K ++I 
Sbjct: 5  FFSGVGGIELGFEKTNKFRVV---YANEIDKNARITYKLNFPDVFLDPRDIHEVKPEEIK 61

Query: 66 DH--DVLLAGFPCQPFSQAG 83
          +   DV++ GFPCQ FS AG
Sbjct: 62 EEKLDVIVGGFPCQAFSIAG 81


>gi|261364680|ref|ZP_05977563.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
 gi|288566964|gb|EFC88524.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
          Length = 419

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           + K+ +LF G GG+ + +EQ       E    +EI+  + KT + N PN  ++ GDIAK+
Sbjct: 75  LYKLLELFAGAGGLAIGMEQA----GFESVLLNEIDAAACKTLRKNRPNWNVVEGDIAKL 130

Query: 60  KTQDIPDH-DVLLAGFPCQPFSQAG 83
                 D  D+L  GFPCQ FS AG
Sbjct: 131 DFTPYRDQIDILSGGFPCQAFSYAG 155


>gi|261252209|ref|ZP_05944782.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935600|gb|EEX91589.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
          Length = 584

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 51/112 (45%), Gaps = 38/112 (33%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLI------ 52
           DLF GIGG+R    + F     +C F+SE +  + +TY AN        P  L       
Sbjct: 99  DLFAGIGGLR----RGFEDIGGKCRFTSEWDDKARRTYLANHYVDKDELPYFLDESTENP 154

Query: 53  -----FGDIAKIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
                F DI KI                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 155 MKNRDFMDITKITLSGESSVSEKEKLNHIRKHIPEHDVLLAGFPCQPFSLAG 206


>gi|116627564|ref|YP_820183.1| site-specific DNA methylase [Streptococcus thermophilus LMD-9]
 gi|116100841|gb|ABJ65987.1| Site-specific DNA methylase [Streptococcus thermophilus LMD-9]
          Length = 406

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG+ L     F +      ++++    +V+TY+ N  N ++ GDI KI +
Sbjct: 4  LNLLSLFSGAGGMDL----GFKNAGFNILWANDFQKDAVETYKNNIGNHIVLGDITKIDS 59

Query: 62 QDIP--DHDVLLAGFPCQPFSQA 82
           +IP  D DV++ GFPCQ FS A
Sbjct: 60 SEIPGTDIDVVIGGFPCQGFSIA 82


>gi|328912201|gb|AEB63797.1| Modification methylase Rho11sI [Bacillus amyloliquefaciens LL3]
          Length = 503

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N    L +GD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQLNYGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI    +P+ D+L+ G PCQ FS AG
Sbjct: 58 VSKIDKTFLPEFDLLVGGSPCQSFSVAG 85


>gi|261379604|ref|ZP_05984177.1| modification methylase EcoRII [Neisseria subflava NJ9703]
 gi|284798084|gb|EFC53431.1| modification methylase EcoRII [Neisseria subflava NJ9703]
          Length = 320

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF GIGG    L++       +C F+SE +  + KTY+ N  N    GDI K + +D I
Sbjct: 10 DLFAGIGGFHFALKEL----RGKCVFASEWDKNAQKTYEVNH-NLKPLGDITKQEIKDQI 64

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P+  D+L AGFPCQ FS AG
Sbjct: 65 PEKFDILCAGFPCQAFSIAG 84


>gi|149190453|ref|ZP_01868724.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
 gi|148835707|gb|EDL52673.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
          Length = 373

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+   F GIGG  L  E+      +E  F  E+N +  K  + ++P+  +  DI  +  
Sbjct: 81  FKVASFFAGIGGFDLGCERA----GMEVVFQCEVNSFCQKVLKKHWPSIPLHSDIKTLSA 136

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            DIPD ++   GFPCQ  S A
Sbjct: 137 SDIPDANIWCGGFPCQDVSLA 157


>gi|293371777|ref|ZP_06618187.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292633229|gb|EFF51800.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 459

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+   F G GG+ L  EQ       E  +++E +    +TYQ N PNT L   DI  +K
Sbjct: 1  MKVASFFAGCGGLDLGFEQA----GYEVIWANEFDEGIHETYQFNHPNTYLCKSDIRTLK 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D  + G PCQ +S+ G
Sbjct: 57 AADIPDCDGFIGGPPCQSWSEGG 79


>gi|219871000|ref|YP_002475375.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          parasuis SH0165]
 gi|219691204|gb|ACL32427.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          parasuis SH0165]
          Length = 295

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 36/57 (63%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++C   SEI+P    TYQ  F +    GD+ +I  Q +PD DV+LAGFPCQ FS AG
Sbjct: 1  MQCVGHSEIDPEPDTTYQIFFNDRNNLGDLTQIDIQKLPDFDVMLAGFPCQTFSIAG 57


>gi|320156908|ref|YP_004189287.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319932220|gb|ADV87084.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 38/112 (33%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNT----- 50
           DLF GIGG+R    + F +   +C F+SE +  + +TY AN          F N+     
Sbjct: 102 DLFAGIGGLR----KGFENVGGKCVFTSEWDEKARRTYLANHYVDESELPYFLNSEQDDG 157

Query: 51  ---LIFGDIAKIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
                F DI +I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 158 MKNTNFMDITQITLSGDPEATELQQQASILKHIPKHDVLLAGFPCQPFSLAG 209


>gi|197303495|ref|ZP_03168534.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
          29176]
 gi|197297493|gb|EDY32054.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
          29176]
          Length = 496

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIA 57
          + K  DL  GIGGIR   E T    NV    S+EI+PY+  TY+  F   P   +  +  
Sbjct: 2  IYKTIDLCAGIGGIRRGFEMTGLFENV---LSAEIDPYAALTYKHLFGEDPTNDLTSEDF 58

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          K +  +  ++DVLLAGFPCQ FS+ G
Sbjct: 59 KNEVVNT-EYDVLLAGFPCQAFSRVG 83


>gi|305666023|ref|YP_003862310.1| putative DNA modification methylase [Maribacter sp. HTCC2170]
 gi|88710798|gb|EAR03030.1| putative DNA modification methylase (N.MgoV) [Maribacter sp.
          HTCC2170]
          Length = 493

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 8/80 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQD 63
          DLF GIGG RL L++       EC   SEIN  ++  Y  NF +  +   G+I KI  ++
Sbjct: 8  DLFSGIGGFRLGLQRN----GGECIGFSEINKDAIDFYCENFGDDRSENLGNITKI--EN 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P HD+L AG PCQ +S AG
Sbjct: 62 LPQHDLLTAGVPCQSWSIAG 81


>gi|225862882|ref|YP_002748260.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225789623|gb|ACO29840.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 360

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 12/90 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          + ++ DLFCG GGI     + F     E     +IN  +V+T+  NFP++  +  DI KI
Sbjct: 2  VARVIDLFCGCGGI----SEGFRLSGFEIVGGLDINEDAVETFNKNFPDSQAYCADIEKI 57

Query: 60 KTQDIP-------DHDVLLAGFPCQPFSQA 82
          K  DIP       D DV++ G PCQ FS A
Sbjct: 58 KNDDIPFMFDLLGDIDVIVGGPPCQGFSSA 87


>gi|218248203|ref|YP_002373574.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060473|ref|YP_003138361.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218168681|gb|ACK67418.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256590639|gb|ACV01526.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 460

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 12/84 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-----FGDIAKIK 60
           DLF GIGG R+ L+        +C   SEI+  ++K YQ NF N L      FGDI +I 
Sbjct: 27  DLFAGIGGFRIALKSLGG----KCLGFSEIDKQAIKVYQHNFINYLTSDEREFGDITQIP 82

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
             ++P + D+++ G PCQP+S AG
Sbjct: 83  --NLPQNVDIIVGGVPCQPWSVAG 104


>gi|330718183|ref|ZP_08312783.1| cytosine-specific methyltransferase [Leuconostoc fallax KCTC
          3537]
          Length = 414

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I   F G+GGI L  E    +R V   +++E +  +  T++ NF +   + D   IK  D
Sbjct: 5  IVSFFAGVGGIDLGFEDAGEYRTV---YANEFDKNAQHTFETNFKSRGTYLDRRDIKQVD 61

Query: 64 I-------PDHDVLLAGFPCQPFSQAG 83
                  P+  VLLAGFPCQPFS AG
Sbjct: 62 AKEVKAKAPNASVLLAGFPCQPFSIAG 88


>gi|254883949|ref|ZP_05256659.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
 gi|254836742|gb|EET17051.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
          Length = 420

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G+   ++ L++       E +++SEI+ ++++  Q NFP+T+  GD+ ++  
Sbjct: 1  MKVLSLFDGMSCGQIALKRL--GIRTETYYASEIDRHAIRQTQLNFPDTIQLGDVTQVDV 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +   D+L+ G PCQ FS AG
Sbjct: 59 RQLEPIDLLIGGSPCQSFSFAG 80


>gi|332970702|gb|EGK09683.1| DNA (cytosine-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 197

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          E  ++++ +PY+VK Y ANF +     D+  I   ++P+HD+LL GFPCQ FS
Sbjct: 22 EIAYAADYDPYAVKIYNANFSHQAEIKDVRDIVAGELPEHDILLGGFPCQSFS 74


>gi|229095557|ref|ZP_04226542.1| Modification methylase Sau3AI [Bacillus cereus Rock3-29]
 gi|228687859|gb|EEL41752.1| Modification methylase Sau3AI [Bacillus cereus Rock3-29]
          Length = 427

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    ++N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NKNFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEVPEHDLLVGGFPCQDYSVA 85


>gi|206600250|ref|YP_002241856.1| gp69 [Mycobacterium phage Ramsey]
 gi|206287338|gb|ACI12681.1| gp69 [Mycobacterium phage Ramsey]
          Length = 447

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ + +EQ F  R V   +  E+NP + K     +P     GDI  +  
Sbjct: 1  MKIGSLFSGAGGLDIAVEQFFGARTV---WHCELNPDASKVLAHRWPGVPNLGDITAVDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  GFPCQ  S AG
Sbjct: 58 STVEPVDILAGGFPCQDVSAAG 79


>gi|328948537|ref|YP_004365874.1| DNA (cytosine-5-)-methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328448861|gb|AEB14577.1| DNA (cytosine-5-)-methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 129

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++ N PNT LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFEKA----GFEIPIANEFDSSIWATFEKNHPNTKLIRGDIRNIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|317008995|gb|ADU79575.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 309

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGG----FECAFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|294083958|ref|YP_003550715.1| cytosine-specific methyltransferase [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292663530|gb|ADE38631.1| Cytosine-specific methyltransferase [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 407

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK  DL  GIGG  L  E     + +      + + +  K    ++P+  I  D+ ++ 
Sbjct: 1  MLKHLDLASGIGGFSLGFEWAGLSQPI---MFCDTDEWCRKVLNKHWPDVPIVNDVKELA 57

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
           +   IPDHD+L AG+PCQPFS AG
Sbjct: 58 NEPSQIPDHDILSAGYPCQPFSVAG 82


>gi|317181696|dbj|BAJ59480.1| DNA-cytosine methyltransferase [Helicobacter pylori F57]
          Length = 309

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGG----FECAFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|308061704|gb|ADO03592.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
 gi|308063214|gb|ADO05101.1| DNA-cytosine methyltransferase [Helicobacter pylori Sat464]
 gi|317180749|dbj|BAJ58535.1| DNA-cytosine methyltransferase [Helicobacter pylori F32]
          Length = 309

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGG----FECAFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|261839203|gb|ACX98968.1| DNA-cytosine methyltransferase [Helicobacter pylori 52]
          Length = 309

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGG----FECAFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|224436796|ref|ZP_03657794.1| modification methylase HaeIII [Helicobacter cinaedi CCUG 18818]
 gi|313143285|ref|ZP_07805478.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
 gi|313128316|gb|EFR45933.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
          Length = 305

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F     E  F+++I+  + ++YQ N  N ++  DI  ++ 
Sbjct: 4  IKVISLFSGCGGLDLG----FIKAGFEIVFANDIDKEACESYQKNIGNHIVCKDIYTLEV 59

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          ++IP+ D+L+ GFPC  F+ A
Sbjct: 60 EEIPNADILIGGFPCLGFTIA 80


>gi|325860528|ref|ZP_08173633.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
 gi|325481968|gb|EGC84996.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
          Length = 403

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 13/95 (13%)

Query: 2  LKITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---- 50
          +KI  LF G GG+ L        + +++     E  F+++ +  +   Y +N   T    
Sbjct: 5  IKIASLFSGCGGLDLGFIGGFDFMGKSYPKLPTEIVFANDFDTDAATCYNSNSLLTKNNH 64

Query: 51 --LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             +  DI  +  ++IPD+D+LLAGFPCQPFS AG
Sbjct: 65 AKCLLRDIRSVNVEEIPDYDILLAGFPCQPFSNAG 99


>gi|307244197|ref|ZP_07526312.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492347|gb|EFM64385.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 534

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 15/86 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK---- 58
           K+  LF G GG+ L  +Q       E  ++++ +  + + Y+ NF      G+I K    
Sbjct: 197 KLVSLFSGCGGMDLGFKQA----GYEIVYANDFDSDAQRVYEKNF------GEIDKRSIL 246

Query: 59  -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            +  ++IPD D+L AGFPCQPFS AG
Sbjct: 247 DVDEKEIPDCDILTAGFPCQPFSNAG 272


>gi|225375779|ref|ZP_03753000.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans
          DSM 16841]
 gi|225212376|gb|EEG94730.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans
          DSM 16841]
          Length = 431

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          ++  DLF GIGG R  L +     N  C    E++ Y+ K YQ  F         D   I
Sbjct: 6  IQFFDLFSGIGGFREGLRRA---GNFVCVGHCEVDTYADKNYQLLFDTEGEWYCNDARTI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + + +PD D+L AGFPCQ FS AG
Sbjct: 63 EPERMPDFDLLCAGFPCQAFSIAG 86


>gi|188527161|ref|YP_001909848.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
 gi|188143401|gb|ACD47818.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
          Length = 309

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGG----FECAFLQAGFEIDWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|228957327|ref|ZP_04119088.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228802360|gb|EEM49216.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 427

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEIPEHDLLVGGFPCQDYSVA 85


>gi|229078249|ref|ZP_04210814.1| Modification methylase Sau3AI [Bacillus cereus Rock4-2]
 gi|228705049|gb|EEL57470.1| Modification methylase Sau3AI [Bacillus cereus Rock4-2]
          Length = 427

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEIPEHDLLVGGFPCQDYSVA 85


>gi|229101666|ref|ZP_04232385.1| Modification methylase Sau3AI [Bacillus cereus Rock3-28]
 gi|228681735|gb|EEL35893.1| Modification methylase Sau3AI [Bacillus cereus Rock3-28]
          Length = 427

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEIPEHDLLVGGFPCQDYSVA 85


>gi|229108527|ref|ZP_04238142.1| Modification methylase Sau3AI [Bacillus cereus Rock1-15]
 gi|228674934|gb|EEL30163.1| Modification methylase Sau3AI [Bacillus cereus Rock1-15]
          Length = 427

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEIPEHDLLVGGFPCQDYSVA 85


>gi|229171704|ref|ZP_04299279.1| Modification methylase Sau3AI [Bacillus cereus MM3]
 gi|228611850|gb|EEK69097.1| Modification methylase Sau3AI [Bacillus cereus MM3]
          Length = 430

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEIPEHDLLVGGFPCQDYSVA 85


>gi|325130663|gb|EGC53404.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325134723|gb|EGC57362.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325144843|gb|EGC67131.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325205668|gb|ADZ01121.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 316

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 15  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 74

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I +   +     D+++ GFPCQ  S  G
Sbjct: 75  IWQYLDEIPTSADIIIGGFPCQDISING 102


>gi|254805366|ref|YP_003083587.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|254668908|emb|CBA07091.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|308389730|gb|ADO32050.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
          Length = 389

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 88  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 147

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I +   +     D+++ GFPCQ  S  G
Sbjct: 148 IWQYLDEIPTSADIIIGGFPCQDISING 175


>gi|332361316|gb|EGJ39120.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sanguinis SK1056]
          Length = 454

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG R+ LE     +  EC    EI+ ++ K+YQA +     +   DI ++
Sbjct: 4  MKFLDLFAGIGGFRMGLES----QGHECIGYCEIDKFARKSYQAIYDTEGEIELHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|319745928|gb|EFV98213.1| type II DNA modification methyltransferase [Streptococcus
          agalactiae ATCC 13813]
          Length = 454

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFKQLRGQVDIICGGFPCQAFSLAG 87


>gi|157311261|ref|YP_001469305.1| gp72 [Mycobacterium phage Tweety]
 gi|148540890|gb|ABQ86141.1| gp72 [Mycobacterium phage Tweety]
          Length = 370

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L +E+ F  R V   +  EI+P + K     +P+   FG +  I  
Sbjct: 1  MRIGSLFSGAGGLDLAVEEVFGGRTV---WHCEIDPAASKVLAHRWPSVPNFGSVTDIDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DVL  GFPCQ  S AG
Sbjct: 58 STVEPVDVLCGGFPCQDLSCAG 79


>gi|296313785|ref|ZP_06863726.1| modification methylase NgoPII [Neisseria polysaccharea ATCC
          43768]
 gi|296839714|gb|EFH23652.1| modification methylase NgoPII [Neisseria polysaccharea ATCC
          43768]
          Length = 330

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI  IK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEVPVANEYDKTIWSTFKANHPKTHLIEGDIRSIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|154502686|ref|ZP_02039746.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
 gi|153796569|gb|EDN78989.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
          Length = 458

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
           ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 35  IRFFDLFSGIGGFREGLRRA---GGFTCVGHCEVDAYADKNYRLLFDTEGEWFCNDARTI 91

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +T+ +PD D+L AGFPCQ FS AG
Sbjct: 92  ETERMPDFDLLCAGFPCQAFSIAG 115


>gi|153815491|ref|ZP_01968159.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC
          27756]
 gi|145847133|gb|EDK24051.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC
          27756]
          Length = 439

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 16 IRFFDLFSGIGGFREGLRRA---GGFTCVGHCEVDAYADKNYRLLFDTEGEWFCNDARTI 72

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T+ +PD D+L AGFPCQ FS AG
Sbjct: 73 ETERMPDFDLLCAGFPCQAFSIAG 96


>gi|332968936|gb|EGK07982.1| DNA-cytosine methyltransferase [Desmospora sp. 8437]
          Length = 379

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           ++ DLF G GG+        +  + E  ++++ N Y+VKTY  NF N  + GDI  +  
Sbjct: 5  FRVIDLFSGAGGMSAGFSN-LSKGDFEPVWANDYNAYAVKTYNRNFDNHCVHGDIVDLLG 63

Query: 60 -KTQDIPDHDVLLAGFPCQPFS 80
            T +IP  D+++ G PCQ FS
Sbjct: 64 DTTVEIPKADLVIGGPPCQGFS 85


>gi|288958310|ref|YP_003448651.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
 gi|288910618|dbj|BAI72107.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
          Length = 375

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 6/81 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLFCG GG+ L   Q    R V   F+ + + ++ +TY+ NF + +I GDI +I++ 
Sbjct: 31  KLIDLFCGAGGLTLGFVQA-GFRPV---FAIDDDRHAAETYRLNFGDHIICGDIRQIES- 85

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
             P  DV++ G PCQ FS+ G
Sbjct: 86  -FPAADVVIGGPPCQGFSRLG 105


>gi|225858823|ref|YP_002740333.1| methyl transferase [Streptococcus pneumoniae 70585]
 gi|225720620|gb|ACO16474.1| methyl transferase [Streptococcus pneumoniae 70585]
          Length = 451

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAMFKTEEEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             DI       DV+  GFPCQ FS AG
Sbjct: 57 TDHDIRQFRGQVDVICGGFPCQAFSLAG 84


>gi|293975|gb|AAB59071.1| cytosine methylase [Neisseria gonorrhoeae]
          Length = 341

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|289422787|ref|ZP_06424624.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
 gi|289156786|gb|EFD05414.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
          Length = 536

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI---- 56
          M    DLF G GG+ L   QT   +  +   + E NP   +TY+ N P   +FGD+    
Sbjct: 1  MFNTIDLFAGAGGLSLGFMQT---KKFDIKVAYEFNPSMQETYKKNHPGVAVFGDVRDAN 57

Query: 57 -AKIKTQDIPDHDVLLAGFPCQPFSQA 82
           A+IK +   D DV++ G PCQ FS A
Sbjct: 58 YAEIK-EKYGDIDVVIGGPPCQGFSNA 83


>gi|268604583|ref|ZP_06138750.1| cytosine methylase [Neisseria gonorrhoeae PID1]
 gi|268588714|gb|EEZ53390.1| cytosine methylase [Neisseria gonorrhoeae PID1]
          Length = 341

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|1399076|gb|AAB03209.1| NgoII cytosine methylase M.NgoII [Neisseria gonorrhoeae]
          Length = 341

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|59802113|ref|YP_208825.1| DcmB [Neisseria gonorrhoeae FA 1090]
 gi|268593822|ref|ZP_06127989.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae 35/02]
 gi|268597735|ref|ZP_06131902.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA19]
 gi|291042825|ref|ZP_06568566.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria
          gonorrhoeae DGI2]
 gi|293398154|ref|ZP_06642359.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|44873|emb|CAA30038.1| unnamed protein product [Neisseria gonorrhoeae]
 gi|44888|emb|CAA36888.1| NgoPII restriction and modification [Neisseria gonorrhoeae]
 gi|293960|gb|AAA17019.1| cytosine methylase [Neisseria gonorrhoeae]
 gi|59719008|gb|AAW90413.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA 1090]
 gi|268547211|gb|EEZ42629.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae 35/02]
 gi|268551523|gb|EEZ46542.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA19]
 gi|291013259|gb|EFE05225.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria
          gonorrhoeae DGI2]
 gi|291611417|gb|EFF40487.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|227054|prf||1613419B NgoPII methylase
          Length = 341

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|319746106|gb|EFV98380.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 458

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|228913600|ref|ZP_04077228.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228846011|gb|EEM91034.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 427

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEVPEHDLLVGGFPCQDYSVA 85


>gi|228944657|ref|ZP_04107027.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228815117|gb|EEM61368.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 427

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAE-AWPEVPEHDLLVGGFPCQDYSVA 85


>gi|307152045|ref|YP_003887429.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982273|gb|ADN14154.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 323

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+  LF G GG+ L     F     +  ++++I+  + +TY+ N  + +I  D+  I 
Sbjct: 1  MIKVISLFSGCGGMDLG----FKWAGYQIIWANDIDHDACETYKRNIGDHIIKDDVKNIN 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
           + +PD D++L GFPCQ FS
Sbjct: 57 FEQLPDCDLILGGFPCQDFS 76


>gi|325132717|gb|EGC55400.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325136737|gb|EGC59337.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325138603|gb|EGC61162.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142796|gb|EGC65168.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198710|gb|ADY94166.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325201728|gb|ADY97182.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325204572|gb|ADZ00026.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
 gi|325208528|gb|ADZ03980.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 316

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 15  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 74

Query: 56  IAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I +    +IP   D+++ GFPCQ  S  G
Sbjct: 75  IWQ-HLDEIPTSADIIIGGFPCQDISING 102


>gi|261392162|emb|CAX49670.1| putative modification methylase (cytosine-specific
           methyltransferase) [Neisseria meningitidis 8013]
 gi|309378365|emb|CBX23011.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 389

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 88  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 147

Query: 56  IAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I +    +IP   D+++ GFPCQ  S  G
Sbjct: 148 IWQ-HLDEIPTSADIIIGGFPCQDISING 175


>gi|225075681|ref|ZP_03718880.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
 gi|224952952|gb|EEG34161.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
          Length = 389

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 88  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 147

Query: 56  IAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I +    +IP   D+++ GFPCQ  S  G
Sbjct: 148 IWQ-HLDEIPTSADIIIGGFPCQDISING 175


>gi|121635255|ref|YP_975500.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313668027|ref|YP_004048311.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica ST-640]
 gi|120866961|emb|CAM10721.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313005489|emb|CBN86924.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica 020-06]
          Length = 383

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 3   KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           KI  LF G GG+ L        L +T++  + +  +++EI+ ++V+TY+ N  N ++ GD
Sbjct: 82  KIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHGD 141

Query: 56  IAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I +    +IP   D+++ GFPCQ  S  G
Sbjct: 142 IWQ-HLDEIPTSADIIIGGFPCQDISING 169


>gi|283797105|ref|ZP_06346258.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075522|gb|EFE12886.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 535

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +  LF GIGG  L       H  +   ++SEI P+ ++  +  FP+    GDI K+ 
Sbjct: 1  MLTLGSLFDGIGGFPL----AGIHNGITPLWASEIEPFPIQVTKLRFPDMEHVGDITKLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P  DV+  G PCQ  S AG
Sbjct: 57 GGKLPPVDVICGGSPCQDLSVAG 79


>gi|332523411|ref|ZP_08399663.1| modification methylase HpaII [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314675|gb|EGJ27660.1| modification methylase HpaII [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 451

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|312863775|ref|ZP_07724013.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
          F0396]
 gi|311101311|gb|EFQ59516.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
          F0396]
          Length = 454

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|126660265|ref|ZP_01731380.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
 gi|126618440|gb|EAZ89194.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
          Length = 458

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 12/84 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKIK 60
           D F GIGG R+ LE+       +C   SEI+  ++K YQ NF        L  GDI+KI 
Sbjct: 32  DFFAGIGGFRIPLEKL----GGKCLGYSEIDKEAIKVYQQNFISYYNSEELNLGDISKIN 87

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
           +  +P + D+ + G PCQP+S AG
Sbjct: 88  S--LPKNVDLFVGGVPCQPWSVAG 109


>gi|146298415|ref|YP_001193006.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152833|gb|ABQ03687.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
          Length = 329

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  L+ G+GGI L     F     E  +++E +  +  TY+ NF + LI GD+  +    
Sbjct: 5  VGSLYAGVGGICL----GFKKAGFELEWANEFDKNACITYKNNFEHNLIEGDVMALDVTS 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +   ++L AGFPCQPFS AG
Sbjct: 61 LKKINILTAGFPCQPFSVAG 80


>gi|901818|gb|AAA69959.1| 5C-DNA methyltransferase [Bacillus phage H2]
          Length = 503

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQA--NFPNTLIFGD 55
          L++  LF GIG     L      RN+    E    SEI+ Y++K+Y A  N      FGD
Sbjct: 4  LRVMSLFSGIGAFEAAL------RNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQSNFGD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++KI  + +P+ D+L+ G PCQ FS  G
Sbjct: 58 VSKIDKKKLPEFDLLVGGSPCQSFSVRG 85


>gi|329960681|ref|ZP_08299024.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT
          12057]
 gi|328532554|gb|EGF59348.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT
          12057]
          Length = 572

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
          +++ +LF G+GG R+ LE   +    +  ++++  P S K   A+      FG       
Sbjct: 5  IRVVELFAGVGGFRIGLEGASD--AYQTIWNNQWEP-STKRQDASLVYKARFGSKGHSNR 61

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI  + T++IPDHD+L+ GFPCQ +S A 
Sbjct: 62 DINTVPTKEIPDHDLLVGGFPCQDYSVAA 90


>gi|319757724|gb|ADV69666.1| DNA-cytosine methyltransferase [Streptococcus suis JS14]
          Length = 451

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         V+  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|325270473|ref|ZP_08137075.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
 gi|324987196|gb|EGC19177.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
          Length = 365

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 3  KITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          K+  LFCG GG  L        L + ++    E  ++ + + ++V TY  NF +  +  D
Sbjct: 7  KVASLFCGCGGSDLGIVGGFEYLGKRYDELPFEIAYAVDFDKWAVDTYNKNFRHKAVCAD 66

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFS 80
          + ++   +  D DVL+ GFPCQ FS
Sbjct: 67 VTEVDFDETADVDVLIGGFPCQSFS 91


>gi|20094956|ref|NP_614803.1| site-specific DNA methylase [Methanopyrus kandleri AV19]
 gi|19888204|gb|AAM02733.1| Site-specific DNA methylase [Methanopyrus kandleri AV19]
          Length = 315

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+ DLFCG GG      + F     +     E NP    TY+ NFP   +I  DI ++ +
Sbjct: 4  KVVDLFCGAGG----FSRGFKEAGFKILGGVENNPAPAATYRENFPEAEVIERDIQRVDS 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQA 82
          ++I D     DV++ G PC+PF+ A
Sbjct: 60 EEIVDELGEPDVIIGGPPCEPFTAA 84


>gi|1781029|emb|CAA67412.1| orf1 [Methanopyrus kandleri]
          Length = 146

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+ DLFCG GG      + F     +     E NP    TY+ NFP   +I  DI ++ +
Sbjct: 4  KVVDLFCGAGG----FSRGFKEAGFKILGGVENNPAPAATYRENFPEAEVIERDIQRVDS 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQA 82
          ++I D     DV++ G PC+PF+ A
Sbjct: 60 EEIVDELGEPDVIIGGPPCEPFTAA 84


>gi|328947038|ref|YP_004364375.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447362|gb|AEB13078.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 466

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QDI 64
           DLF G+GG  L +++       +C F+SE+       Y+ N+     FGDI K+   +DI
Sbjct: 30  DLFAGLGGFHLAMQKL----GGKCVFASELKEDLRILYKENY-GIDCFGDINKVDIDKDI 84

Query: 65  PDH-DVLLAGFPCQPFSQAG 83
           P   D+L AGFPCQPFS+AG
Sbjct: 85  PKKFDMLCAGFPCQPFSKAG 104


>gi|292670760|ref|ZP_06604186.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647381|gb|EFF65353.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 476

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GIGG  L       H  V   ++SEI P+       +FPN   FGDI +I  
Sbjct: 1  MTLGSLFDGIGGWLL----AARHAGVTPVWASEIEPFPCSVTARHFPNVKQFGDITQIDP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++ AG PCQ  S AG
Sbjct: 57 DEIDPVDIICAGSPCQDLSIAG 78


>gi|327534643|gb|AEA93477.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis OG1RF]
          Length = 334

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +H    C    EI+ Y+ K+YQA       +   DI  +
Sbjct: 1  MEFLDLFAGIGGFRLGMEMAGHH----CIGFCEIDKYARKSYQAIHQTKGEIELHDITSV 56

Query: 60 KT---QDIPDHDVLLAGFPCQPFSQAG 83
               Q I   D+L  GFPCQ FS AG
Sbjct: 57 SNEFIQSIGHTDILCGGFPCQAFSIAG 83


>gi|153939897|ref|YP_001391385.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          Langeland]
 gi|152935793|gb|ABS41291.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          Langeland]
 gi|295319412|gb|ADF99789.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          230613]
          Length = 547

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF G GG+ L  E T      E     E N  + KTY  N  N   + DI K+ 
Sbjct: 1  MYKIVDLFAGAGGLSLGFEMT---EKFEIVAFVENNKNAAKTYLKNHSNIKNYEDILKLD 57

Query: 61 TQDI----PDHDVLLAGFPCQPFSQA 82
            DI    P+ DV++ G PCQ FS A
Sbjct: 58 FNDILSSNPNIDVVIGGPPCQGFSNA 83


>gi|70606458|ref|YP_255328.1| site-specific DNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567106|gb|AAY80035.1| site-specific DNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 319

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLF G GG  L     FN    E   S +IN  + +TY  NFPNT++   DI  I 
Sbjct: 4  VKVIDLFSGAGGFSLG----FNREPFEIKLSVDINHAAARTYSINFPNTVVIEDDIRNIT 59

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQA 82
           +DI      + D+++   PC+PF+ A
Sbjct: 60 GRDIRYLIGGEPDIIIGSPPCEPFTGA 86


>gi|228969793|ref|ZP_04130554.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228789920|gb|EEM37741.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 246

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLF GIGGI L  +       +E     EI P++ K    ++P   IF DI  +  
Sbjct: 1  MKMLDLFSGIGGISLAADWA----GIETTAFCEIEPFNQKVLNKHWPKVPIFSDIRTLTK 56

Query: 62 QDIPDHDV-------LLAGFPCQPFSQAG 83
          Q + +  V       +  GFPCQP+S AG
Sbjct: 57 QSLEERGVDVGTISIVAGGFPCQPYSVAG 85


>gi|194099965|ref|YP_002003104.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|239997973|ref|ZP_04717897.1| Modification methylase NgoPII [Neisseria gonorrhoeae 35/02]
 gi|240015049|ref|ZP_04721962.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI18]
 gi|240017498|ref|ZP_04724038.1| Modification methylase NgoPII [Neisseria gonorrhoeae FA6140]
 gi|240122118|ref|ZP_04735080.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID24-1]
 gi|240124411|ref|ZP_04737367.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID332]
 gi|240124717|ref|ZP_04737603.1| Modification methylase NgoPII [Neisseria gonorrhoeae SK-92-679]
 gi|254494673|ref|ZP_05107844.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|260439589|ref|ZP_05793405.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI2]
 gi|268599983|ref|ZP_06134150.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          MS11]
 gi|268602320|ref|ZP_06136487.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID18]
 gi|268683040|ref|ZP_06149902.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID332]
 gi|268683292|ref|ZP_06150154.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-92-679]
 gi|268687469|ref|ZP_06154331.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-93-1035]
 gi|462655|sp|P08455|MTP2_NEIGO RecName: Full=Modification methylase NgoPII; Short=M.NgoPII;
          AltName: Full=Cytosine-specific methyltransferase
          NgoPII
 gi|193935255|gb|ACF31079.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|226513713|gb|EEH63058.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|268584114|gb|EEZ48790.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          MS11]
 gi|268586451|gb|EEZ51127.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID18]
 gi|268623324|gb|EEZ55724.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID332]
 gi|268623576|gb|EEZ55976.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-92-679]
 gi|268627753|gb|EEZ60153.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-93-1035]
 gi|317165417|gb|ADV08958.1| DcmB [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 330

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPEEIDGIIGGPPCQSWSEAG 80


>gi|323693327|ref|ZP_08107545.1| hypothetical protein HMPREF9475_02408 [Clostridium symbiosum
          WAL-14673]
 gi|323502810|gb|EGB18654.1| hypothetical protein HMPREF9475_02408 [Clostridium symbiosum
          WAL-14673]
          Length = 536

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G GG+ L   QT   +  +   + E NP   +TY+ N P   +FGD+    
Sbjct: 1  MFNTIDLFAGAGGLSLGFMQT---KKFDIKVAYEFNPAMQETYKKNHPGVAVFGDVRDAN 57

Query: 61 TQDIPDH----DVLLAGFPCQPFSQA 82
            +I +     DV++ G PCQ FS A
Sbjct: 58 YAEIKEKYGNIDVVIGGPPCQGFSNA 83


>gi|269121452|ref|YP_003309629.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268615330|gb|ACZ09698.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 372

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--FGDIAKI 59
          +K+ +LF GIG  R  LE+   H  V  F  SEI+ +++ +Y+A   + L    GDI KI
Sbjct: 1  MKVIELFAGIGSPRKALEKLNIHHKVIAF--SEIDRFAIDSYRAIHNDFLTPNLGDIEKI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++P+ D+L+ G PCQ  S AG
Sbjct: 59 K--ELPETDLLIYGSPCQDISIAG 80


>gi|300867524|ref|ZP_07112175.1| putative Modification methylase HgiDII [Oscillatoria sp. PCC 6506]
 gi|300334518|emb|CBN57345.1| putative Modification methylase HgiDII [Oscillatoria sp. PCC 6506]
          Length = 361

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           +L   DLFCG GG+    E   NH N+    + + NP   KTY+ N PN  ++  DIA +
Sbjct: 18  LLTAVDLFCGCGGVT---EGLTNH-NIRVVAAVDNNPIVCKTYKINHPNVNLYESDIALL 73

Query: 60  KTQDI-------PDHDVLLAGFPCQPFS 80
              DI        D D+L+   PCQPFS
Sbjct: 74  DPMDIRQNDLKGADVDILVVCAPCQPFS 101


>gi|153854028|ref|ZP_01995361.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
 gi|149753410|gb|EDM63341.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
          Length = 468

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
           ++  DLF GIGG R  L +     N  C    E++ Y+ K Y+  F         D   I
Sbjct: 43  IQFFDLFSGIGGFREGLRRA---GNFVCVGHCEVDTYADKNYRLLFDTEGEWYCNDTRTI 99

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           + + +PD D+L AGFPCQ FS AG
Sbjct: 100 EPERMPDFDLLCAGFPCQAFSIAG 123


>gi|227536485|ref|ZP_03966534.1| site-specific DNA-methyltransferase [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227243562|gb|EEI93577.1| site-specific DNA-methyltransferase [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 349

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTF-NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ML+   LF GIGG   D+  ++   +NV   FS E +P+     +  +PNT  + DI   
Sbjct: 1  MLRHGSLFSGIGG--FDIAASWMGWQNV---FSCEKDPFCRTVLKHYWPNTAHYEDIYDF 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
          +      H D++  GFPCQPFSQAG
Sbjct: 56 RATHFRGHIDIISGGFPCQPFSQAG 80


>gi|312874669|ref|ZP_07734692.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
 gi|311089796|gb|EFQ48217.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
          Length = 331

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F     E   ++E +    KTY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDLG----FKKAGYEIVAANEFDKTIWKTYEKNHATRLIKGDICKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P+ D ++ G PCQ +S+AG
Sbjct: 57 DEFPECDGIIGGPPCQSWSEAG 78


>gi|302866239|ref|YP_003834876.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
 gi|302569098|gb|ADL45300.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
          Length = 368

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          L + DLF G GG+ +     F++       S E +  +  TY ANF      + DI KIK
Sbjct: 8  LSMIDLFAGCGGMTVG----FHNEGFRPILSVEWDRAAASTYAANFGKEHTRWEDIEKIK 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            +IPD DV++ G PCQ FS  G
Sbjct: 64 DDEIPDADVIIGGPPCQGFSNLG 86


>gi|254285523|ref|ZP_04960487.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
 gi|150424385|gb|EDN16322.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
          Length = 417

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK- 60
           K+ +LF G GG+ + +EQ      ++    +E++ ++  T + N P+  +I GDIAK+  
Sbjct: 79  KLVELFAGGGGLAIGMEQA----GLKSILLNEMDKHACNTLRHNRPDWNVIEGDIAKVDF 134

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
           TQ   + DVL  GFPCQ FS AG
Sbjct: 135 TQIKEEVDVLTGGFPCQAFSYAG 157


>gi|7243959|gb|AAB21481.2| cytosine DNA methyltransferase homolog [Neisseria gonorrhoeae]
          Length = 347

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLYLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|228982443|ref|ZP_04142702.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          Bt407]
 gi|228776626|gb|EEM24934.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          Bt407]
          Length = 418

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 6  DLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          DLFCG G    G++L              ++ + NPY+VKTY        +  DI KI  
Sbjct: 20 DLFCGAGVGACGVKL--------AGYHMAYAVDNNPYAVKTYNKMIGPHAVLADIRKINP 71

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD ++A   C+ FS AG
Sbjct: 72 NDIPDHDFMIATPVCKSFSVAG 93


>gi|322411604|gb|EFY02512.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLIR----QGHECIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|256397638|ref|YP_003119202.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM
          44928]
 gi|256363864|gb|ACU77361.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM
          44928]
          Length = 389

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          LK+ DLFCG GG     E+T    + E  +  +I P SV T+Q N    L + GDI K++
Sbjct: 4  LKVMDLFCGTGGFSKGFEKT---GSFEVVYGIDILPLSVATFQLNHEAALALSGDIRKVR 60

Query: 61 TQDIPDH--------DVLLAGFPCQPFS 80
            +I +         DV++ G PCQ FS
Sbjct: 61 RSEIAEKLNLARDEVDVIIGGPPCQGFS 88


>gi|325972432|ref|YP_004248623.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
 gi|324027670|gb|ADY14429.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
          Length = 402

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTL-IFGDIA 57
          + +LF G+GG R+ LE +   +     F+++  P     ++   Y  +F   +    DIA
Sbjct: 7  VVELFAGVGGFRVGLEASGVWK---VAFANQWEPGKKNQWAFDCYTKHFSEGIHSNADIA 63

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          K++ +DIPDH +L+ GFPCQ +S A 
Sbjct: 64 KVEAKDIPDHSLLVGGFPCQDYSVAA 89


>gi|260890952|ref|ZP_05902215.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
 gi|260859505|gb|EEX74005.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
          Length = 452

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L + +       E  ++++    +V+TY+ N  N ++ GDI  I ++
Sbjct: 10 KVISLFSGAGGMDLGIIKA----GFEVIWANDFEKDAVETYRRNIGNHIVLGDITMISSK 65

Query: 63 DIP----DHDVLLAGFPCQPFSQA 82
          +IP    + D+++ GFPCQ FS A
Sbjct: 66 EIPLKKGEVDLIIGGFPCQGFSIA 89


>gi|254442311|ref|ZP_05055787.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
 gi|198256619|gb|EDY80927.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
          Length = 338

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 28 ECFFSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          EC   SEINP + +TY+        +   L  GD+ KI   D PD DV+L GFPCQ FS 
Sbjct: 29 ECVGYSEINPKAKRTYRMLHELDTLWEPQLDLGDLTKINPNDAPDFDVMLGGFPCQTFSI 88

Query: 82 AG 83
           G
Sbjct: 89 VG 90


>gi|303231468|ref|ZP_07318199.1| modification methylase HhaI family protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302513905|gb|EFL55916.1| modification methylase HhaI family protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 411

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT   R V   +++E +  +  TY+ NFP+  +   DI  + + 
Sbjct: 11 IAAFFSGVGGIELGFEQTNKFRVV---YANEFDKNANITYKLNFPDIQLDNRDIHIVSSS 67

Query: 63 DIPDH--DVLLAGFPCQPFSQAG 83
          DI     DV++ GFPCQ FS AG
Sbjct: 68 DIKTEKIDVIVGGFPCQAFSIAG 90


>gi|225869346|ref|YP_002745294.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
          zooepidemicus]
 gi|225702622|emb|CAX00673.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
          zooepidemicus]
          Length = 451

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L +   H+   C    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLTRQ-GHK---CIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 56

Query: 60 KTQDIPD----HDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQMDIICGGFPCQAFSLAG 84


>gi|170718749|ref|YP_001783936.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168826878|gb|ACA32249.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 372

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 16 KILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 71

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 72 DPTIPDCDIILGGFPCQDFS 91


>gi|323127564|gb|ADX24861.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 96

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL L      +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGL----TRQGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|59800809|ref|YP_207521.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA 1090]
 gi|254493277|ref|ZP_05106448.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|260440968|ref|ZP_05794784.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|268594414|ref|ZP_06128581.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|268596411|ref|ZP_06130578.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|268598542|ref|ZP_06132709.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268600894|ref|ZP_06135061.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268681681|ref|ZP_06148543.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268683908|ref|ZP_06150770.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291044296|ref|ZP_06570005.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|293399487|ref|ZP_06643640.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717704|gb|AAW89109.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA 1090]
 gi|226512317|gb|EEH61662.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|268547803|gb|EEZ43221.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|268550199|gb|EEZ45218.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|268582673|gb|EEZ47349.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268585025|gb|EEZ49701.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268621965|gb|EEZ54365.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268624192|gb|EEZ56592.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291011190|gb|EFE03186.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|291610056|gb|EFF39178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 374

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|268686152|ref|ZP_06153014.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
 gi|268626436|gb|EEZ58836.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
          Length = 374

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|159037548|ref|YP_001536801.1| C-5 cytosine-specific DNA methylase [Salinispora arenicola
          CNS-205]
 gi|157916383|gb|ABV97810.1| C-5 cytosine-specific DNA methylase [Salinispora arenicola
          CNS-205]
          Length = 98

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----A 57
          L + DLF GIGG+ L L++      +      EINPY       ++P      D+    A
Sbjct: 6  LHVLDLFAGIGGLSLGLQRA----GMRIVGHVEINPYCRAVLARHWPEVSCHDDVRTAAA 61

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++ D P  DV+  G+PCQP S AG
Sbjct: 62 WWRSTDRPRVDVVAGGYPCQPESLAG 87


>gi|11386930|sp|Q59606|MTF7_NEIGO RecName: Full=Modification methylase NgoFVII; Short=M.NgoFVII;
          AltName: Full=Cytosine-specific methyltransferase
          NgoFVII; Short=M.NgoVII
 gi|1165245|gb|AAA86270.1| M.NgoVII [Neisseria gonorrhoeae]
          Length = 374

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|240117500|ref|ZP_04731562.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID1]
 gi|268603200|ref|ZP_06137367.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
 gi|268587331|gb|EEZ52007.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
          Length = 374

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|332655061|ref|ZP_08420802.1| modification methylase NgoFVII
          (Cytosine-specificmethyltransferase NgoFVII)
          (M.NgoFVII) (M.NgoVII) [Ruminococcaceae bacterium D16]
 gi|332515921|gb|EGJ45530.1| modification methylase NgoFVII
          (Cytosine-specificmethyltransferase NgoFVII)
          (M.NgoFVII) (M.NgoVII) [Ruminococcaceae bacterium D16]
          Length = 369

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 7/81 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--- 59
          K+  +F G GG+ L     F+       ++++   ++VK+++ANF + + + DI KI   
Sbjct: 12 KVVSIFSGCGGLDLG----FHMEGYNTIWANDFAEWAVKSFRANFGDVIKYEDITKINPY 67

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
          + + IP+ D++L GFPCQ FS
Sbjct: 68 EDKSIPECDLVLGGFPCQDFS 88


>gi|317504402|ref|ZP_07962385.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
 gi|315664482|gb|EFV04166.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
          Length = 579

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK-----TYQANFPNT-LIFGD 55
          +K+ +LF G+GG R+ LE   +  + E  ++++  P ++       Y+A F +      D
Sbjct: 9  IKVVELFAGVGGFRIGLEGASD--DYETIWNNQWEPSTIHQDASLVYRARFGSKGHCNED 66

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  + T +IP+HD+L+ GFPCQ +S A
Sbjct: 67 INNVDTANIPNHDLLVGGFPCQDYSVA 93


>gi|309809233|ref|ZP_07703103.1| modification methylase HaeIII [Lactobacillus iners SPIN
          2503V10-D]
 gi|308170467|gb|EFO72490.1| modification methylase HaeIII [Lactobacillus iners SPIN
          2503V10-D]
          Length = 340

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F     E   ++E +    KTY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDL----GFKKAGYEIVVANEFDKTIWKTYEKNNATKLIKGDICKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+AG
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEAG 78


>gi|319744643|gb|EFV96990.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 451

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL LE    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGLESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +++ DH         D++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|269214273|ref|ZP_05986228.2| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
 gi|269210330|gb|EEZ76785.1| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
          Length = 330

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPEGIDGIIGGPPCQSWSEAG 80


>gi|319744417|gb|EFV96775.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 450

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            +D        D++  GFPCQ FS AG
Sbjct: 60 TDEDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|254411906|ref|ZP_05025682.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181628|gb|EDX76616.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 456

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKI 59
            DLF GIGG R+ LE+       +C   SEI+  +V  Y+ NF      + L  GDI  I
Sbjct: 31  VDLFAGIGGFRIPLEEL----GGKCLGYSEIDKEAVNVYKKNFISYINADELYLGDI--I 84

Query: 60  KTQDIP-DHDVLLAGFPCQPFSQAG 83
               +P + D+L+ G PCQP+S AG
Sbjct: 85  ALHKLPFEVDILVGGVPCQPWSIAG 109


>gi|327463103|gb|EGF09424.1| modification methylase ScrFIA [Streptococcus sanguinis SK1]
          Length = 346

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +        L+Q +    +E  ++++I+  + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLDQHYADNQIEIVYANDIDDSANKMFEKNFGITPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          ++ ++K+ +IP  D+L  GFPCQ FS
Sbjct: 64 NVREVKSNEIPSFDILTGGFPCQSFS 89


>gi|80159730|ref|YP_398474.1| putative DNA methylase [Clostridium phage c-st]
 gi|78675320|dbj|BAE47742.1| putative DNA methylase [Clostridium phage c-st]
          Length = 370

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  D F G G  R  +E   +    EC    EI   + +TY+ N+  T    F D+A++
Sbjct: 1  MKFIDFFSGAGMFRKGMEDAGH----ECIGYVEIQKQARETYETNYDTTKEWTFHDVAQL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          K +DIP+ D+   GFPC+  S A
Sbjct: 57 KAEDIPNADIWCFGFPCKNMSTA 79


>gi|260591850|ref|ZP_05857308.1| type II DNA modification methyltransferase [Prevotella veroralis
          F0319]
 gi|260536134|gb|EEX18751.1| type II DNA modification methyltransferase [Prevotella veroralis
          F0319]
          Length = 166

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG    L++ F++       ++E +P    T++ANFP+T LI GDI  +K
Sbjct: 1  MNLISLFSGAGG----LDKGFHNAGFRTMVANEFDPKICPTFKANFPDTKLIEGDIRNVK 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
            + P H   ++ G PCQ +S+AG
Sbjct: 57 DGEFPKHVAGIIGGPPCQSWSEAG 80


>gi|40218563|gb|AAR83217.1| chromosome partitioning protein parB [Streptococcus pyogenes]
 gi|50261608|gb|AAT72376.1| methylase [Streptococcus pyogenes]
          Length = 388

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F GIGG R  LE       + C    E + ++V++YQA +         DI K+
Sbjct: 4  LTFIDFFAGIGGFRRGLELA----GMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+  AG PCQ  S AG
Sbjct: 60 KPNDIPKADIWTAGSPCQNVSIAG 83


>gi|50914489|ref|YP_060461.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50903563|gb|AAT87278.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F GIGG R  LE       + C    E + ++V++YQA +         DI K+
Sbjct: 4  LTFIDFFAGIGGFRRGLELA----GMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+  AG PCQ  S AG
Sbjct: 60 KPNDIPKADIWTAGSPCQNVSIAG 83


>gi|291525775|emb|CBK91362.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 510

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF GIGG    L  T N  ++   ++SEI+P+ +      FP     GDI K+  
Sbjct: 4  LKLGSLFDGIGG--FPLAATMN--DIRPVWASEIDPFPMAVTAYRFPEMKHMGDITKLHG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  DV+  G PCQ  S AG
Sbjct: 60 ANLPVVDVIAGGSPCQDLSVAG 81


>gi|126698504|ref|YP_001087401.1| putative DNA methylase [Clostridium difficile 630]
 gi|115249941|emb|CAJ67761.1| putative phage DNA modification methylase [Clostridium difficile]
          Length = 357

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIA 57
          ML   DLF GIGG RL +E+   H+   C    E + ++  +Y A      +     DI 
Sbjct: 1  MLTFLDLFAGIGGFRLGMEKA-GHK---CLGHCEYDKFANLSYNAMHKPKEDEWFERDIR 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +I+T++IP  DV   GFPCQ  S AG
Sbjct: 57 EIRTENIPRADVWCFGFPCQDISVAG 82


>gi|159030022|emb|CAO90403.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 412

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ L LE       ++     EIN   V T + N P   +I  DI KIK  
Sbjct: 71  VIELFAGCGGMALGLENA----GLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIKFS 126

Query: 63  DIPDH-DVLLAGFPCQPFSQAG 83
           D  D  D++  GFPCQPFS AG
Sbjct: 127 DFRDKIDIVAGGFPCQPFSYAG 148


>gi|308176203|ref|YP_003915609.1| DNA (cytosine-5-)-methyltransferase-like protein [Arthrobacter
           arilaitensis Re117]
 gi|307743666|emb|CBT74638.1| DNA (cytosine-5-)-methyltransferase-like protein [Arthrobacter
           arilaitensis Re117]
          Length = 391

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  LF G GG+ L +E  F     E  + SEIN    + +  ++P+    GDI  I  
Sbjct: 32  LRVGSLFSGYGGLDLAVEYQFI---AETIWFSEINEPVARVFSHHWPDVPNLGDITAIDW 88

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             +P  D++  GFPCQ  S  G
Sbjct: 89  TTVPSVDIVCGGFPCQDVSTVG 110


>gi|209901299|ref|YP_002290938.1| putative DNA methylase [Clostridium phage phiCD27]
 gi|199612180|gb|ACH91353.1| putative DNA methylase [Clostridium phage phiCD27]
          Length = 276

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIA 57
          ML   DLF GIGG RL +E+   H+   C    E + ++  +Y A      +     DI 
Sbjct: 1  MLTFLDLFAGIGGFRLGMEKA-GHK---CLGHCEYDKFANLSYNAMHKPKEDEWFERDIR 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +I+T++IP  DV   GFPCQ  S AG
Sbjct: 57 EIRTENIPRADVWCFGFPCQDISVAG 82


>gi|145641419|ref|ZP_01796998.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          influenzae R3021]
 gi|145273962|gb|EDK13829.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          influenzae 22.4-21]
          Length = 298

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +EC   SE++    KTY+  F ++L  GD+ ++  + +PD D+++AGFPCQ FS  G
Sbjct: 1  MECIAHSEVDLNPAKTYEIFFNDSLNLGDLTQLAPKSLPDFDLMIAGFPCQTFSIIG 57


>gi|315150308|gb|EFT94324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0012]
          Length = 334

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +H    C    EI+ Y+ K+YQA       +   DI  +
Sbjct: 1  MEFLDLFAGIGGFRLGMEMAGHH----CIGFCEIDKYARKSYQAIHQTKGEIELHDITSV 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   D+L  GFPCQ FS AG
Sbjct: 57 SNEFIRSIGHTDILCGGFPCQAFSIAG 83


>gi|210614083|ref|ZP_03290039.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
 gi|210150861|gb|EEA81869.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
          Length = 244

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIKTQDI 64
          +F GIGG R  L +        C    EI+ Y+ ++Y+A  N        D  KI+ +++
Sbjct: 1  MFSGIGGFREGLNRA---GGFSCVGHCEIDKYADRSYRAIFNTEGEWFCNDAKKIRPEEL 57

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P+ D+L  GFPCQ FS AG
Sbjct: 58 PEFDLLCGGFPCQAFSVAG 76


>gi|109947509|ref|YP_664737.1| methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714730|emb|CAJ99738.1| methylase [Helicobacter acinonychis str. Sheeba]
          Length = 177

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MEVGSLFAGIGG----FECMFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|302873674|ref|YP_003842307.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686602|ref|ZP_07629048.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576531|gb|ADL50543.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 448

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 1  MLKITDL-FC-GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDI 56
          M+ +T L FC GIGG RL LE T  H+   C    E + ++VK+Y+A F         DI
Sbjct: 1  MISMTFLDFCAGIGGFRLGLELT-GHK---CIGFCEKDKFAVKSYKAMFETEGEWYANDI 56

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++K+ +IP  D+   GFPCQ  S AG
Sbjct: 57 TELKSDEIPYADIWCFGFPCQDISVAG 83


>gi|325069077|ref|ZP_08127750.1| cytosine-specific DNA modification methyltransferase [Actinomyces
          oris K20]
          Length = 448

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK---- 60
          TDLF GIGG    L         +C ++ EI+  + + Y+ N+      GDI        
Sbjct: 8  TDLFAGIGGFHAALSGMGG----QCTYAVEIDKDAARIYEQNW-GVGALGDITVDAGEHG 62

Query: 61 -TQDIPDHDVLLAGFPCQPFSQAG 83
           ++ I  HD+L AGFPCQPFS++G
Sbjct: 63 VSERIQPHDILAAGFPCQPFSKSG 86


>gi|306833678|ref|ZP_07466805.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
          700338]
 gi|304424448|gb|EFM27587.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
          700338]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F NT   G++     
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAIF-NTE--GEMEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         V+  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|223933016|ref|ZP_03625010.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223898333|gb|EEF64700.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         V+  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|91976449|ref|YP_569108.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91682905|gb|ABE39207.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  LF GIGG     ++ F   +       EI+ +     + ++P T +F DI KI  
Sbjct: 27  LRVASLFAGIGG----FDKAFESVSASVVAQCEIDSFCRAVLRRHWPQTKLFEDITKINP 82

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            + P  D+  AGFPCQ  S A
Sbjct: 83  AEFPAADIWTAGFPCQDVSLA 103


>gi|255530844|ref|YP_003091216.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255343828|gb|ACU03154.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
          Length = 350

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 21/97 (21%)

Query: 2  LKITDLFCGIGGIR-------LDLEQTFNHRNVECFFSSEINPYSVKTYQANF------- 47
          ++  +LF GIGG R       +D +Q F     EC   SEI+ ++  TY AN+       
Sbjct: 1  MRYIELFSGIGGFRNAADHLTVDTDQPF-----ECIAFSEIDRHAKSTYLANYNTEGEVQ 55

Query: 48 -PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + + F D  K   +++PD D+LL GFPCQ FS  G
Sbjct: 56 MDDIISFTD-EKKNIENLPDFDLLLGGFPCQAFSLLG 91


>gi|229824483|ref|ZP_04450552.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC
          51271]
 gi|229786084|gb|EEP22198.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC
          51271]
          Length = 406

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I   F G+GGI L  EQT     V   +++E +  +  TY  N+P+T +   DI ++   
Sbjct: 14 IAAFFSGVGGIELGFEQTGKFHTV---YANEFDANARTTYALNYPDTFLDPRDIHEVSPD 70

Query: 63 DIPDH-DVLLAGFPCQPFSQAG 83
          +I +  D+++ GFPCQ FS AG
Sbjct: 71 EIGEQVDLVVGGFPCQAFSIAG 92


>gi|157419765|gb|ABV55454.1| DNA methylase [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         ++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|86142380|ref|ZP_01060890.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
          blandensis MED217]
 gi|85831132|gb|EAQ49589.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
          blandensis MED217]
          Length = 332

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          LK  DLF G GG  L     F+++  +  FS +I P   +TY  NFP + LI  DI  +K
Sbjct: 5  LKYIDLFSGAGGFSLG----FDNKGFQNVFSVDIEPSFCETYNHNFPSHNLIHKDICDVK 60

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
            ++       + DV++ G PCQ FS AG
Sbjct: 61 DAELKYLKEYDEIDVVIGGPPCQGFSIAG 89


>gi|319639602|ref|ZP_07994349.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399173|gb|EFV79847.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 327

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          LK+  LFCG GG  L        L QT+     E  ++ + + ++V+TY ANF +  I  
Sbjct: 5  LKVVSLFCGCGGSDLGLLGGFEYLGQTYPKLPFEIVYALDFDKFAVQTYNANFEHPAICD 64

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          DI  +  Q++ D D+LL GFPCQ FS
Sbjct: 65 DIKNLNIQELDDFDLLLGGFPCQSFS 90


>gi|319638577|ref|ZP_07993339.1| modification methylase NgoFVII [Neisseria mucosa C102]
 gi|317400326|gb|EFV80985.1| modification methylase NgoFVII [Neisseria mucosa C102]
          Length = 374

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 RILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|325678044|ref|ZP_08157681.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus
          8]
 gi|324110261|gb|EGC04440.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus
          8]
          Length = 324

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTF-------NHRNVECFFSSEINPYSVKTYQANF-PNTLI 52
          M  +  LFCG GG  +     F            +  FS +I+  ++ TY+ANF  + +I
Sbjct: 1  MYNVVSLFCGCGGADMGTVGGFVFNKKKYKKHPCKLVFSCDIDQKAIDTYKANFNSDEVI 60

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
           GD+  + ++++P  D+L  GFPCQ FS
Sbjct: 61 CGDVCDLPSENVPPCDILTGGFPCQSFS 88


>gi|253755079|ref|YP_003028219.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|251817543|emb|CAZ55290.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         ++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|22537444|ref|NP_688295.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          2603V/R]
 gi|76797962|ref|ZP_00780222.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          18RS21]
 gi|77406085|ref|ZP_00783160.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          H36B]
 gi|313890485|ref|ZP_07824113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|22534321|gb|AAN00168.1|AE014251_12 C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          2603V/R]
 gi|76586686|gb|EAO63184.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          18RS21]
 gi|77175318|gb|EAO78112.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          H36B]
 gi|313121002|gb|EFR44113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|323127117|gb|ADX24414.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         ++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|218439218|ref|YP_002377547.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218171946|gb|ACK70679.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 323

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+++  LF G GG+ L     F     E  ++++I+  + +TYQ N  + +I  DI  I 
Sbjct: 1  MIRVVSLFSGCGGMDLG----FIWAGYEIVWANDIDHDACETYQLNIGDHIIEDDIKNIN 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
           + +P+ D++L GFPCQ FS
Sbjct: 57 FKHLPECDLILGGFPCQDFS 76


>gi|52841468|ref|YP_095267.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628579|gb|AAU27320.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 416

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ L     F++  ++C    EI+   V+T + N P+  +I  DIA + 
Sbjct: 81  FKVVELFAGAGGLALG----FHNAGLDCSMLVEIDKNPVETLRHNCPSWNVIHDDIANVD 136

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            Q I   DV+  GFPCQ FS AG
Sbjct: 137 FQGI-TADVVAGGFPCQAFSYAG 158


>gi|146318633|ref|YP_001198345.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|146320840|ref|YP_001200551.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751755|ref|YP_003024896.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|253755540|ref|YP_003028680.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|145689439|gb|ABP89945.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|145691646|gb|ABP92151.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251816044|emb|CAZ51664.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|251818004|emb|CAZ55786.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CLGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         ++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|225076231|ref|ZP_03719430.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
          NRL30031/H210]
 gi|224952355|gb|EEG33564.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
          NRL30031/H210]
          Length = 374

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 RILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          D  IPD D++L GFPCQ FS
Sbjct: 73 DPTIPDCDIILGGFPCQDFS 92


>gi|160894995|ref|ZP_02075769.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
 gi|156863426|gb|EDO56857.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
          Length = 447

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR--NVECFFSSEINPYSVKTYQANFPNT--LIFGDIA 57
           ++  DLF GIGG R  L     HR     C    E + Y+   Y+  F         D  
Sbjct: 20  IRFFDLFSGIGGFREGL-----HRAGGFTCVGHCEADAYADHNYRVLFDTEGEWFCNDAR 74

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
            I+T+ +PD D+L AGFPCQ FS AG
Sbjct: 75  NIETERMPDFDLLCAGFPCQAFSIAG 100


>gi|291514217|emb|CBK63427.1| DNA-methyltransferase (dcm) [Alistipes shahii WAL 8301]
          Length = 296

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + + +LF GIGG  L L Q  F    V   + SEI+ ++V  ++ NFP+    G +  I 
Sbjct: 1  MNLLELFSGIGGFSLGLRQAGFTFDKV---YFSEIDRHAVANFKHNFPHAQHVGSVCDIT 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             I   D++  G PCQ FS AG
Sbjct: 58 GTSIERPDIITFGSPCQNFSAAG 80


>gi|237725529|ref|ZP_04556010.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D4]
 gi|229436216|gb|EEO46293.1| DNA (cytosine-5-)-methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 374

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 18/92 (19%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-------------NTLI 52
          DLF GIGG    +         +C F+SE + Y+  +Y+AN+              N L 
Sbjct: 10 DLFAGIGGFHTAMHSV----GGKCVFASEWDKYARISYEANYKDIEPDLFQKDSYGNYLF 65

Query: 53 FG-DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          F  DI +   + IP  DV   GFPCQPFS AG
Sbjct: 66 FNNDITEAIPESIPAFDVCCGGFPCQPFSIAG 97


>gi|218249004|ref|YP_002374375.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218169482|gb|ACK68219.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 456

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKIK 60
           DLF GIGG R+ LEQ       +C   SEI+  ++K Y+ NF      +    GDI ++ 
Sbjct: 32  DLFSGIGGFRIPLEQL----GGKCLGYSEIDTEAIKVYRRNFIRYSNRDETYLGDITQL- 86

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
              IP   DV++ G PCQP+S AG
Sbjct: 87  -NQIPFKVDVIVGGVPCQPWSIAG 109


>gi|160893669|ref|ZP_02074453.1| hypothetical protein CLOL250_01223 [Clostridium sp. L2-50]
 gi|156864654|gb|EDO58085.1| hypothetical protein CLOL250_01223 [Clostridium sp. L2-50]
          Length = 573

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVEC----FFSSEINPYSVKTYQANFPNTLIFGDI 56
          M+ +  LF GIGG  L          V C     ++SEI P+ ++  +  FP+ +  GDI
Sbjct: 1  MMTLGSLFDGIGGFPL--------AAVHCGGVPVWASEIEPFPMRVTKLRFPDMIHVGDI 52

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           K+    +P  DV+  G PCQ  S AG
Sbjct: 53 TKLDGAKLPPVDVICGGSPCQDLSVAG 79


>gi|257062089|ref|YP_003139977.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256592255|gb|ACV03142.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 456

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKIK 60
           DLF GIGG R+ LEQ       +C   SEI+  ++K Y+ NF      +    GDI ++ 
Sbjct: 32  DLFSGIGGFRIPLEQL----GGKCLGYSEIDTEAIKVYRRNFIRYSNRDETYLGDITQL- 86

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
              IP   DV++ G PCQP+S AG
Sbjct: 87  -NQIPFKVDVIVGGVPCQPWSIAG 109


>gi|160931938|ref|ZP_02079330.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
 gi|156868980|gb|EDO62352.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
          Length = 379

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          ++  DLF GIGG R  L Q        C    EI+ ++ ++Y+A F         DI K 
Sbjct: 6  IRYLDLFSGIGGFREGLTQA---GGFTCAGHCEIDQHADRSYRALFDTEGEWFCDDIRKA 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +++PD ++L  GFPCQ FS AG
Sbjct: 63 DPEELPDVELLCGGFPCQAFSIAG 86


>gi|314942817|ref|ZP_07849633.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133C]
 gi|314953501|ref|ZP_07856416.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133A]
 gi|314992545|ref|ZP_07857964.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|314997818|ref|ZP_07862728.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a01]
 gi|313588159|gb|EFR67004.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a01]
 gi|313592912|gb|EFR71757.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|313594483|gb|EFR73328.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133A]
 gi|313598452|gb|EFR77297.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133C]
          Length = 144

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|314940603|ref|ZP_07847734.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313640209|gb|EFS04790.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
          Length = 83

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|192824080|ref|YP_001994542.1| gp84 [Mycobacterium phage KBG]
 gi|190610310|gb|ACE79832.1| gp84 [Mycobacterium phage KBG]
          Length = 237

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          + +  LF GIGG+ L LE+      +      EI+P+  +  + ++P+     D+     
Sbjct: 1  MNVLSLFAGIGGLELGLERL----GMRVVGQVEIDPFCQQVLEKHWPDVPKHDDVRTAVE 56

Query: 60 --KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++++ P  DV+  GFPCQPFS AG
Sbjct: 57 WWESEERPGVDVICGGFPCQPFSSAG 82


>gi|223932228|ref|ZP_03624232.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223899209|gb|EEF65566.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E    H+   C    EI+ ++  +Y+A F NT   G+I     
Sbjct: 1  MKFLDLFAGIGGFRLGMESQ-GHK---CVGFCEIDKFARTSYKAMF-NTE--GEIEYHDI 53

Query: 62 QDIPDHD---------VLLAGFPCQPFSQAG 83
          +++ DHD         ++  GFPCQ FS AG
Sbjct: 54 KEVTDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|293371782|ref|ZP_06618192.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CMC
          3f]
 gi|292633234|gb|EFF51805.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CMC
          3f]
          Length = 161

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +KI  LF G GG+ L  E+       +  +++E +    KTY+ N  NT++    I  I 
Sbjct: 1  MKIVSLFAGAGGLDLGFERA----GFDIVWANEYDKDIWKTYEKNHSNTILDKRSITDIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T DIP+ D ++ G PCQ +S+AG
Sbjct: 57 TTDIPECDGIIGGPPCQSWSEAG 79


>gi|210617281|ref|ZP_03291507.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
 gi|210149385|gb|EEA80394.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
          Length = 455

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
           ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 32  IQFFDLFSGIGGFREGLRRA---GGFTCVGHCEVDTYADKNYRLLFDTEGEWYCSDARTI 88

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           + + +PD D+L AGFPCQ FS AG
Sbjct: 89  EPERMPDFDLLCAGFPCQAFSIAG 112


>gi|330996255|ref|ZP_08320145.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
 gi|329573759|gb|EGG55350.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
          Length = 351

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG  L  E T    NV   F  EIN +  +    +FPN   + DI K  T   P 
Sbjct: 10 LFSGIGGFDLAAEWT-GWTNV---FHCEINEFCTRILNHHFPNAEHYADITK--TDFTPW 63

Query: 67 H---DVLLAGFPCQPFSQAG 83
              DVL  GFPCQPFS AG
Sbjct: 64 RGRIDVLSGGFPCQPFSLAG 83


>gi|256545597|ref|ZP_05472956.1| modification methylase HaeIII (cytosine-specificmethyltransferase
          HaeIII) [Anaerococcus vaginalis ATCC 51170]
 gi|256398722|gb|EEU12340.1| modification methylase HaeIII (cytosine-specificmethyltransferase
          HaeIII) [Anaerococcus vaginalis ATCC 51170]
          Length = 340

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L     F     E   ++E +    +TY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDL----GFQKAGYEIVAANEFDKTIWETYEKNHEAKLIKGDIFKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P+ D ++ G PCQ +S+AG
Sbjct: 57 DEFPECDGIIGGPPCQSWSEAG 78


>gi|331091171|ref|ZP_08340013.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330405393|gb|EGG84929.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 375

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 17/86 (19%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-------K 58
          DL  GIGG+R   E T    NV    ++EI+ Y+  TYQ       ++GD A       +
Sbjct: 7  DLCAGIGGMRKGFELTGYFHNV---LAAEIDKYACMTYQH------LYGDDANHDLTSEE 57

Query: 59 IKTQ-DIPDHDVLLAGFPCQPFSQAG 83
           K + D   +DVLLAGFPCQ FS+AG
Sbjct: 58 FKAELDTIQYDVLLAGFPCQTFSKAG 83


>gi|22538008|ref|NP_688859.1| prophage LambdaSa2, type II DNA modification methyltransferase
          [Streptococcus agalactiae 2603V/R]
 gi|22534910|gb|AAN00732.1|AE014276_13 prophage LambdaSa2, type II DNA modification methyltransferase,
          putative [Streptococcus agalactiae 2603V/R]
          Length = 437

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +EQ  +    EC    EIN ++  +Y+   +    +   DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEQAGH----ECIGFCEINKFARASYKVIHDTEGEIELHDITRV 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|296114087|ref|YP_003628025.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|295921781|gb|ADG62132.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|326560672|gb|EGE11040.1| cytosine-specific methyltransferase [Moraxella catarrhalis
          46P47B1]
          Length = 318

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-I 64
          DLF G+GG    ++        EC F+SE +  + KTY AN    + +GDI   +T++ I
Sbjct: 8  DLFAGVGGFHFAMQAV----GGECVFASEWDLNAKKTYFANH-GFVPYGDITLDETKEKI 62

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P + DVL AGFPCQ FS AG
Sbjct: 63 PQNFDVLCAGFPCQAFSVAG 82


>gi|258514764|ref|YP_003190986.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
 gi|257778469|gb|ACV62363.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
          Length = 703

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L +  LF GIGG  L  + Q F        ++SEI P+ ++  +  FP  L  GDI K+K
Sbjct: 5  LSLGSLFDGIGGFPLAGVRQGF-----ASVWASEIEPFPIEVTKIRFPEMLHVGDITKLK 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++   DV+  G PCQ  S AG
Sbjct: 60 GAELAPVDVVCGGSPCQDLSVAG 82


>gi|15611502|ref|NP_223153.1| type II DNA modification (methyltransferase [Helicobacter pylori
          J99]
 gi|4154963|gb|AAD06007.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
          pylori J99]
          Length = 351

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPRVPIDILLGGPPCQSYSTLG 83


>gi|312901958|ref|ZP_07761220.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0470]
 gi|311290894|gb|EFQ69450.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0470]
          Length = 380

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|147668731|ref|YP_001213549.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
 gi|146269679|gb|ABQ16671.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
          Length = 335

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ++I  LF G GG+ L  E+  FN       +++E +     TYQ NFPNT L    I +I
Sbjct: 1  MQIISLFSGAGGLDLGFEKAGFN-----VVWANEYDKTIWDTYQHNFPNTNLDTRSITEI 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           + +IP  D ++ G PCQ +S+AG
Sbjct: 56 PSTEIPTSDGIIGGPPCQSWSEAG 79


>gi|167772229|ref|ZP_02444282.1| hypothetical protein ANACOL_03604 [Anaerotruncus colihominis DSM
          17241]
 gi|167665332|gb|EDS09462.1| hypothetical protein ANACOL_03604 [Anaerotruncus colihominis DSM
          17241]
          Length = 603

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M  +  LF GIGG  L   +      +E  ++SEI  + ++  +  FP+ L  GDI K+ 
Sbjct: 1  MPTLGSLFDGIGGFPLAAVRN----GIEPVWASEIEAFPIEVTRKRFPSILHVGDITKLN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P  D++  G PCQ  S AG
Sbjct: 57 GAELPPVDIITGGSPCQDLSVAG 79


>gi|161869727|ref|YP_001598894.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          meningitidis 053442]
 gi|161595280|gb|ABX72940.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          meningitidis 053442]
          Length = 374

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFS 80
          +  IPD D++L GFPCQ FS
Sbjct: 73 NPTIPDCDIILGGFPCQDFS 92


>gi|317013900|gb|ADU81336.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          Gambia94/24]
          Length = 351

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HPHFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HYHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|229100187|ref|ZP_04231087.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
 gi|228683229|gb|EEL37207.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
          Length = 306

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF G+GG RL +EQ   HR   C    E + ++ K+Y+A  +      + DI+ I
Sbjct: 3  LTFIDLFAGLGGFRLGMEQA-GHR---CLGYVEWDKFARKSYEAIHDTGEEWTWNDISTI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IP  D    GFPCQ  S  G
Sbjct: 59 DYRNIPKSDCWTFGFPCQDISIGG 82


>gi|330723388|gb|AEC45758.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis MCLD]
          Length = 407

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-----YQANFPNT--LIFG 54
          +K+ +LF G+GG RL  E+T   +  +  ++++  P   K      Y  +F N+   +  
Sbjct: 9  IKVVELFAGVGGFRLGFERT--SKLFKTIWANQWEPNKTKQWAFDCYTKHFGNSDNHVNE 66

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DIA +  Q +P+HD+L+ GFPCQ +S A
Sbjct: 67 DIANVIDQ-VPEHDLLVGGFPCQDYSVA 93


>gi|238765010|ref|ZP_04625947.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238696779|gb|EEP89559.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 338

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
           K+ DLFCG GG+     +       E   + + +  ++KTY ANF N  +  +I + I+
Sbjct: 7  FKVIDLFCGAGGLSAGFLKGKQANYFESILAIDNDTAAIKTYNANFGNHGVTANIDEWIE 66

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            +IP  D+++ G PCQ FS
Sbjct: 67 ENEIPQADLVIGGPPCQGFS 86


>gi|304373002|ref|YP_003856211.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis HUB-1]
 gi|304309193|gb|ADM21673.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis HUB-1]
          Length = 407

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-----YQANFPNT--LIFG 54
          +K+ +LF G+GG RL  E+T   +  +  ++++  P   K      Y  +F N+   +  
Sbjct: 9  IKVVELFAGVGGFRLGFERT--SKLFKTIWANQWEPNKTKQWAFDCYTKHFGNSDNHVNE 66

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DIA +  Q +P+HD+L+ GFPCQ +S A
Sbjct: 67 DIANVIDQ-VPEHDLLVGGFPCQDYSVA 93


>gi|262283394|ref|ZP_06061160.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
 gi|262260885|gb|EEY79585.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
          Length = 460

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 21/93 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG RL +E   +    +C    E++ ++ K+Y+A      IF    +++ 
Sbjct: 1  MKFLDLFAGIGGFRLGMEAAGH----QCVGFCEVDGFARKSYKA------IFNTEKEVEL 50

Query: 62 QDI---PDH--------DVLLAGFPCQPFSQAG 83
           DI   PD         D+L  GFPCQ FS AG
Sbjct: 51 HDIRSVPDESIRGLGQVDILCGGFPCQSFSLAG 83


>gi|291543286|emb|CBL16395.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 369

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQD 63
          DL  GIGG    L  T ++R   C   +EI+  + K Y A +     L +GD+  I  ++
Sbjct: 7  DLCSGIGGFHSGLVNTGHYR---CVGHAEIDKNAEKAYNAIYGEEGGLNYGDLRTINPRE 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L  GFPCQ FS AG
Sbjct: 64 LPHFDLLCGGFPCQSFSVAG 83


>gi|291530602|emb|CBK96187.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 369

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQD 63
          DL  GIGG    L  T ++R   C   +EI+  + K Y A +     L +GD+  I  ++
Sbjct: 7  DLCSGIGGFHSGLVNTGHYR---CVGHAEIDKNAEKAYNAIYGEEGGLNYGDLRTINPRE 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L  GFPCQ FS AG
Sbjct: 64 LPHFDLLCGGFPCQSFSVAG 83


>gi|145592627|ref|YP_001156924.1| C-5 cytosine-specific DNA methylase [Salinispora tropica CNB-440]
 gi|145301964|gb|ABP52546.1| C-5 cytosine-specific DNA methylase [Salinispora tropica CNB-440]
          Length = 236

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----A 57
          L + +LF GIGG+ L L++      +      EINP+       ++P      D+    A
Sbjct: 6  LNVLELFAGIGGLSLGLQRA----GLRIVGHVEINPFCRAVLHKHWPEVPCHDDVRTAAA 61

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++ D P  DV+  G+PCQP S AG
Sbjct: 62 WWRSTDRPRVDVVAGGYPCQPESTAG 87


>gi|260913722|ref|ZP_05920198.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
 gi|260632261|gb|EEX50436.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
          Length = 329

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFEKA----GFEIPVANEYDKTIWATFKANHPKTKLIEGDIRSIK 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
            D P+  D ++ G PCQ +S+AG
Sbjct: 57 EDDFPNEIDGIIGGPPCQSWSEAG 80


>gi|324323924|gb|ADY24967.1| modification methylase SPRI [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 290

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF G+GG R  +EQ   H+   C    EI+P++ K+Y+A           DI K+
Sbjct: 3  LTFLDLFSGVGGFRFGMEQA-GHK---CLGYVEIDPHARKSYEAIHQTEGEWSAHDITKV 58

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            +++       DV+  GFPCQ FS AG
Sbjct: 59 SNKELRRFRGKVDVICGGFPCQAFSIAG 86


>gi|160939240|ref|ZP_02086591.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438203|gb|EDP15963.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
          BAA-613]
          Length = 366

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
          D F GIG  RL LEQ        C    EI+ Y+  +YQA            DI K+  Q
Sbjct: 5  DFFAGIGLFRLGLEQA----GWTCKGHCEIDKYANMSYQAMHHIKEGEWFEEDITKVSAQ 60

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +PD D+   GFPCQ  S AG
Sbjct: 61 SLPDVDLWTGGFPCQDVSMAG 81


>gi|86750436|ref|YP_486932.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86573464|gb|ABD08021.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 438

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AK 58
            + DLFCG GG    L Q F          S+ +P ++ TY+ANFP    I GDI  A 
Sbjct: 6  FSVVDLFCGAGG----LSQGFRDAGFRVVAGSDNDPDAMATYRANFPEAAGITGDIRSAP 61

Query: 59 IKTQDIP---DHDVLLAGFPCQPFSQ 81
          IK Q +       VL+ G PCQ FSQ
Sbjct: 62 IKEQLLEAARRATVLIGGPPCQAFSQ 87


>gi|281424544|ref|ZP_06255457.1| modification methylase NgoFVII [Prevotella oris F0302]
 gi|281401381|gb|EFB32212.1| modification methylase NgoFVII [Prevotella oris F0302]
          Length = 131

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 50/82 (60%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF G GG+ L  EQ  +++ +   ++++    + +T++ +F + ++ GDI +I  
Sbjct: 6  IRVVSLFSGCGGLDLGFEQVGDYKTL---WANDFKHEACQTFRRHFGDIIVEGDIEQIDP 62

Query: 62 QD---IPDHDVLLAGFPCQPFS 80
           +   +PD D++L GFPCQ FS
Sbjct: 63 YNNFSVPDCDLVLGGFPCQDFS 84


>gi|262283530|ref|ZP_06061296.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
 gi|262261021|gb|EEY79721.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
          Length = 411

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 21/93 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG R  +E   +    EC    E++ ++ K+Y+A      IF    +++ 
Sbjct: 1  MKFLDLFSGIGGFRFGMEAAGH----ECIGFCEVDVFARKSYKA------IFNTEKEVEL 50

Query: 62 QDI---PDH--------DVLLAGFPCQPFSQAG 83
           DI   PD         D+L  GFPCQ FS AG
Sbjct: 51 HDIRSVPDESIRGLGQVDILCGGFPCQSFSLAG 83


>gi|207092664|ref|ZP_03240451.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_AG0C1]
 gi|207108938|ref|ZP_03243100.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 160

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN     +I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPHFELIWANDIDKDAILSYQANHKEVQIILCDIVQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|319412045|emb|CBY91978.1| C-5-cytosine-specific DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E   +    EC    EI+ ++ K+Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGMESVRH----ECIGFCEIDKFARKSYKSFFQTE---GEIEFRDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|183983894|ref|YP_001852185.1| phage DNA methylase [Mycobacterium marinum M]
 gi|183177220|gb|ACC42330.1| conserved hypothetical phage DNA methylase [Mycobacterium marinum
          M]
          Length = 291

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L +E  F        +  E +P + K    ++P     GD+ +I  
Sbjct: 4  MRIGSLFSGAGGLDLAVEHIFG---ATVAWHCENDPAASKVLAHHWPGVPNLGDVTEIDW 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  G+PCQPFS AG
Sbjct: 61 AQVEPVDILCGGWPCQPFSLAG 82


>gi|289167633|ref|YP_003445902.1| methyl transferase [Streptococcus mitis B6]
 gi|288907200|emb|CBJ22035.1| methyl transferase [Streptococcus mitis B6]
          Length = 452

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ K+Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARKSYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|15901190|ref|NP_345794.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae TIGR4]
 gi|14972819|gb|AAK75434.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae TIGR4]
          Length = 407

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 16/92 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+ + DLF GIGG R+ +E     +  EC    EI+ ++ K+Y++ F      G+I    
Sbjct: 1  MIWVLDLFAGIGGFRMGMEA----QGHECLGFCEIDKFARKSYKSIFQTE---GEIEFHD 53

Query: 61 TQDIPDH---------DVLLAGFPCQPFSQAG 83
           +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 IRDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 85


>gi|331090242|ref|ZP_08339130.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330402188|gb|EGG81760.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 464

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
          L   DL  GIGG RL LE    HR   C    E + ++  +Y+A +     +   D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLESA-GHR---CIGYCEYDRFARASYEAMYDTEGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K++D+P  D+   GFPCQ  S AG
Sbjct: 60 KSEDVPYADIWCFGFPCQDISVAG 83


>gi|317010732|gb|ADU84479.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          SouthAfrica7]
          Length = 348

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCYNLPCTSIDILLGGPPCQSYSTLG 83


>gi|288904476|ref|YP_003429697.1| DNA methylase [Streptococcus gallolyticus UCN34]
 gi|288731201|emb|CBI12749.1| Putative DNA methylase [Streptococcus gallolyticus UCN34]
          Length = 366

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG R+ LE +  HR   C    EI+P++  +Y+  +     + F DI  +
Sbjct: 1  MKFFDLFAGIGGFRMGLE-SLGHR---CVGFCEIDPFARASYKVIYDTEGDIEFHDIRNV 56

Query: 60 KT---QDIPDHDVLLAGFPCQPFSQAG 83
           T   + I   D++  GFPCQ FS AG
Sbjct: 57 TTDAIRGIGRVDIICGGFPCQAFSIAG 83


>gi|308184264|ref|YP_003928397.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060184|gb|ADO02080.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 188

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HPHFELIWANDIDKDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|270157659|ref|ZP_06186316.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
 gi|269989684|gb|EEZ95938.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
          Length = 414

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ L     F++  + C    EI+ + V+T + N P+  +I  DIA + 
Sbjct: 81  FKVVELFAGAGGLALG----FHNAGLNCELLVEIDKFPVETLRKNCPSWNVICDDIANVN 136

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            + +   D++  GFPCQ FS AG
Sbjct: 137 FRGV-KADIVAGGFPCQAFSYAG 158


>gi|160933407|ref|ZP_02080795.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
 gi|156867284|gb|EDO60656.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
          Length = 382

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKTQD 63
          DLF GIGG R  L +        C    EI+ Y+ ++Y+A F         D+ +    +
Sbjct: 9  DLFSGIGGFREGLSRA---GGFVCVGHCEIDKYADQSYRALFDTKGEWFREDVREADPDE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D+L  GFPCQ FS AG
Sbjct: 66 MPDFDLLCGGFPCQSFSIAG 85


>gi|148988377|ref|ZP_01819824.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926058|gb|EDK77132.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
          Length = 343

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +     F+          +E  ++++I   + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLGKHYADNQIEIVYANDIEDSANKMFEKNFGVTPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          +I +IK+ +IP  D+L  GFPCQ FS
Sbjct: 64 NIREIKSDEIPSFDILTGGFPCQSFS 89


>gi|322376648|ref|ZP_08051141.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sp. M334]
 gi|321282455|gb|EFX59462.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sp. M334]
          Length = 452

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ K+Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARKSYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVVCGGFPCQAFSIAG 84


>gi|262402827|ref|ZP_06079388.1| type II restriction-modification system methylation subunit
          [Vibrio sp. RC586]
 gi|262351609|gb|EEZ00742.1| type II restriction-modification system methylation subunit
          [Vibrio sp. RC586]
          Length = 341

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          +   LF G GG+ L     F+       FS++I      TY+ N  + LI  DI KI   
Sbjct: 11 RTISLFSGCGGLDLG----FHKAGFNIVFSNDIEKNVESTYRYNLGDILI-KDITKIDID 65

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           +IP D DV+LAG PCQPFS AG
Sbjct: 66 SEIPNDIDVILAGIPCQPFSSAG 88


>gi|120402107|ref|YP_951936.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119954925|gb|ABM11930.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 386

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF G GG+ L  E +   R  +  ++ + +P++V+TYQ N    ++ GD+      ++P 
Sbjct: 20 LFAGCGGMDLGAEAS---RAAKVVWAIDSDPWAVQTYQRNIGKHIVEGDVTTTPVPEVP- 75

Query: 67 HDVLLAGFPCQPFS 80
           DVLLAG PCQ +S
Sbjct: 76 CDVLLAGPPCQDYS 89


>gi|194335797|ref|YP_002017591.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308274|gb|ACF42974.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 434

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           L++ DLF G GG+       F H +    ++++ N  + ++Y ANF +    GDI  I  
Sbjct: 35  LRVIDLFAGAGGLSAGFSHFFGH-HFTPVWANDFNSCAAESYNANFGHHCRVGDIVDILD 93

Query: 60  -KTQDIPDHDVLLAGFPCQPFS 80
             T  IP  DV++ G PCQ FS
Sbjct: 94  NPTTIIPKADVVIGGPPCQGFS 115


>gi|150007509|ref|YP_001302252.1| site-specific DNA-methyltransferase [Parabacteroides distasonis
          ATCC 8503]
 gi|149935933|gb|ABR42630.1| site-specific DNA-methyltransferase [Parabacteroides distasonis
          ATCC 8503]
          Length = 427

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF G+GG  L  E        E  F  EIN +  K  + +FP ++ + DI +  T   P 
Sbjct: 6  LFSGVGGFDLAAEWM----GWENLFHCEINEWCQKVLRFHFPKSIQYDDITR--TDFTPW 59

Query: 66 --DHDVLLAGFPCQPFSQAG 83
              DVL  GFPCQPFS AG
Sbjct: 60 RGKVDVLTGGFPCQPFSTAG 79


>gi|293568986|ref|ZP_06680299.1| methyl transferase [Enterococcus faecium E1071]
 gi|291588419|gb|EFF20254.1| methyl transferase [Enterococcus faecium E1071]
          Length = 380

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI ++
Sbjct: 1  MRFLDLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTRKEVEMHDITRV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   DVL  GFPCQ FS AG
Sbjct: 57 SDEFVQSLGPVDVLCGGFPCQAFSIAG 83


>gi|166365618|ref|YP_001657891.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166087991|dbj|BAG02699.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 412

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ L LE       ++     EIN   V T + N P   +I  DI KIK  
Sbjct: 71  VIELFAGCGGMALGLENA----GLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIKFS 126

Query: 63  DIPDH-DVLLAGFPCQPFSQAG 83
           +  D  D++  GFPCQPFS AG
Sbjct: 127 NFRDKIDIVAGGFPCQPFSYAG 148


>gi|317055417|ref|YP_004103884.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
 gi|315447686|gb|ADU21250.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
          Length = 543

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLF G GG+ L   QT   +  E   + E NP   KTY+ N P   + GD+      
Sbjct: 5  KVVDLFAGAGGLSLGFVQT---KKYEIKVAFENNPNMQKTYRRNHPKVDVRGDVCAADYS 61

Query: 63 DIPDH----DVLLAGFPCQPFSQA 82
          +I       DV++ G PCQ FS A
Sbjct: 62 EIKRKYGTIDVVIGGPPCQGFSNA 85


>gi|325997344|gb|ADZ49552.1| Type II DNA modification enzyme [Helicobacter pylori 2017]
          Length = 159

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|325995748|gb|ADZ51153.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
          Length = 160

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|238788388|ref|ZP_04632182.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC
          33641]
 gi|238723634|gb|EEQ15280.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC
          33641]
          Length = 380

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
           K+ DLFCG GG+     +       E   + + +  +++TY ANF N  +  +I + I 
Sbjct: 11 FKVIDLFCGAGGLSAGFLKGKQANYFESILAIDNDTAAIRTYNANFGNHGVTANIDEWIA 70

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            +IP  D+++ G PCQ FS
Sbjct: 71 ENEIPQADIVIGGPPCQGFS 90


>gi|289167787|ref|YP_003446056.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907354|emb|CBJ22191.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 346

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +     F+          +E  ++++I   + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLGKHYADNQIEIVYANDIEDSANKMFEKNFGVTPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          +I +IK+ +IP  D+L  GFPCQ FS
Sbjct: 64 NIREIKSDEIPSFDILTGGFPCQSFS 89


>gi|307637157|gb|ADN79607.1| DNA cytosine methyltransferase [Helicobacter pylori 908]
          Length = 165

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|292486555|ref|YP_003529421.1| modification methylase [Erwinia amylovora CFBP1430]
 gi|291551968|emb|CBA19005.1| modification methylase [Erwinia amylovora CFBP1430]
          Length = 379

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  +F G GG+ L   Q       +  ++++ +  +  TY+ N  + +I GD+  +   D
Sbjct: 18 VVSMFSGCGGMDLGFVQA----GYDVVWANDFDADACLTYKRNIGD-IIHGDVTTLDVPD 72

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          + + DVL AGFPCQPFS AG
Sbjct: 73 VKNLDVLTAGFPCQPFSNAG 92


>gi|294787738|ref|ZP_06752982.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
 gi|294484031|gb|EFG31714.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
          Length = 331

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     TY+AN P T LI GDI  I+
Sbjct: 1  MKVISLFSGCGGLDLGFERA----GFEIPVANEYDKTIWATYKANHPKTQLIEGDIRHIQ 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
            + PD  D ++ G PCQ +S+AG
Sbjct: 57 EINFPDEIDGIIGGPPCQSWSEAG 80


>gi|167751790|ref|ZP_02423917.1| hypothetical protein ALIPUT_00030 [Alistipes putredinis DSM
          17216]
 gi|167660688|gb|EDS04818.1| hypothetical protein ALIPUT_00030 [Alistipes putredinis DSM
          17216]
          Length = 318

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG  L  E      N    F+ EI+P+  K  + +FPN   + DI         D
Sbjct: 6  LFSGIGGFDLAAEWA-GWTNA---FNCEIDPFCRKVLKYHFPNAEQYEDIRTTDFTVWKD 61

Query: 67 H-DVLLAGFPCQPFSQAG 83
            DVL  GFPCQPFS AG
Sbjct: 62 RIDVLTGGFPCQPFSLAG 79


>gi|167753338|ref|ZP_02425465.1| hypothetical protein ALIPUT_01612 [Alistipes putredinis DSM
          17216]
 gi|167659269|gb|EDS03399.1| hypothetical protein ALIPUT_01612 [Alistipes putredinis DSM
          17216]
          Length = 319

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG  L  E      N    F+ EI+P+  K  + +FPN   + DI         D
Sbjct: 6  LFSGIGGFDLAAEWA-GWTNA---FNCEIDPFCRKVLKYHFPNAEQYEDIRATDFTVWKD 61

Query: 67 H-DVLLAGFPCQPFSQAG 83
            DVL  GFPCQPFS AG
Sbjct: 62 RIDVLTGGFPCQPFSLAG 79


>gi|292897792|ref|YP_003537161.1| cytosine-specific DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291197640|emb|CBJ44735.1| putative modification methylase (cytosine-specific DNA methylase)
          [Erwinia amylovora ATCC 49946]
          Length = 372

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  +F G GG+ L   Q       +  ++++ +  +  TY+ N  + +I GD+  +   D
Sbjct: 11 VVSMFSGCGGMDLGFVQA----GYDVVWANDFDADACLTYKRNIGD-IIHGDVTTLDVPD 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          + + DVL AGFPCQPFS AG
Sbjct: 66 VKNLDVLTAGFPCQPFSNAG 85


>gi|269964614|ref|ZP_06178852.1| hypothetical protein VMC_02820 [Vibrio alginolyticus 40B]
 gi|269830513|gb|EEZ84734.1| hypothetical protein VMC_02820 [Vibrio alginolyticus 40B]
          Length = 556

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          +LF G GG  L LE+      +EC   ++ +P +  T + N PN  L+ G+I+ +    I
Sbjct: 8  ELFAGCGGTALGLEKA----GMECVLLNDSDPRACDTLRTNRPNWNLVEGNISNVDFSTI 63

Query: 65 PDHDVLLAG-FPCQPFSQAG 83
            H  LL+G FP QPFS AG
Sbjct: 64 STHVDLLSGSFPVQPFSLAG 83


>gi|119512221|ref|ZP_01631310.1| hypothetical protein N9414_08959 [Nodularia spumigena CCY9414]
 gi|119463119|gb|EAW44067.1| hypothetical protein N9414_08959 [Nodularia spumigena CCY9414]
          Length = 393

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
            DLFCG GGI   L Q           S EI+P +  T++ NFP    F GDI +   QD
Sbjct: 63  VDLFCGAGGITQGLSQA----GFTPLASVEISPIASATHKKNFPQCHHFCGDIEQFSAQD 118

Query: 64  I------PDHDVLLAGFPCQPFSQAG 83
                  P+ +V++ G PCQ FS AG
Sbjct: 119 WLQQIGSPEVNVVVGGPPCQGFSVAG 144


>gi|169823586|ref|YP_001691089.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832206|dbj|BAG09121.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 330

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +  LF G GG+ L  ++  FN        ++E +    +TY+ N+   LI  DI  ++
Sbjct: 1  MDLISLFSGAGGLDLGFIKAGFN-----VLVANEYDKRIWETYEKNYETRLIKDDITNVR 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + ++PD D L+ G PCQ +S+AG
Sbjct: 56 SNELPDCDGLIGGPPCQSWSEAG 78


>gi|225856779|ref|YP_002738290.1| methyl transferase [Streptococcus pneumoniae P1031]
 gi|225724445|gb|ACO20297.1| methyl transferase [Streptococcus pneumoniae P1031]
          Length = 452

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ K+Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARKSYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          D++  GFPCQ FS AG
Sbjct: 54 RDVSDAEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|282598683|ref|YP_003358780.1| gp77 [Mycobacterium phage Peaches]
 gi|255928210|gb|ACU41828.1| gp77 [Mycobacterium phage Peaches]
 gi|302858592|gb|ADL71338.1| gp78 [Mycobacterium phage Eagle]
          Length = 177

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIK 60
          +I  LF G GG+ L +E+ F  + +   +  E+   +       F  PN    GD++K+ 
Sbjct: 6  RIGSLFSGAGGLDLAVEEVFGGQTI---WQVEVEKAAATLLAKRFGVPN---LGDVSKVN 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P  D+L  GFPCQ  S AG
Sbjct: 60 WHEVPAVDILCGGFPCQDVSPAG 82


>gi|312200922|ref|YP_004020983.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232258|gb|ADP85113.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 384

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLFCG GG+ L   Q       +   S + +  S++T++ANFP   I  DI      D
Sbjct: 38  LIDLFCGAGGMTLGFMQA----GFQPILSIDHDLPSIETHRANFPGMSICTDIRDF--VD 91

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
            P  DV++ G PCQ FS+ G
Sbjct: 92  FPSADVVVGGPPCQGFSRLG 111


>gi|168335325|ref|ZP_02693422.1| DNA-cytosine methyltransferase [Epulopiscium sp. 'N.t. morphotype
          B']
          Length = 324

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF G GG+ L  E+       E   ++E +     TY+ N    LI GDI+KI +
Sbjct: 1  MRLISLFAGAGGLDLGFEKA----GYEIAAANEYDKTIWATYEKNHKGPLIKGDISKIPS 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
           D PD  D ++ G PCQ +S AG
Sbjct: 57 ADFPDGIDGIIGGPPCQSWSAAG 79


>gi|307570754|emb|CAR83933.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
 gi|307572166|emb|CAR85345.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
          Length = 426

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E+  +    EC    EI+ ++ K+YQA  +        DI K+
Sbjct: 1  MKFLDLFAGIGGFRLGMERAGH----ECVGYVEIDKFARKSYQAIHDTEGEWTREDITKV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 TDEEWRTLRGTVDIICGGFPCQSFSIAG 84


>gi|206975132|ref|ZP_03236046.1| modification methylase HaeIII [Bacillus cereus H3081.97]
 gi|206746553|gb|EDZ57946.1| modification methylase HaeIII [Bacillus cereus H3081.97]
          Length = 352

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G+GG+ L  EQ       E   ++E +      Y+ N  NT +I GDIA++  +
Sbjct: 5  VIDLFAGVGGLSLGFEQ----EGFEVVLANEYDESIANAYKKNHRNTKMIVGDIAELDIK 60

Query: 63 DI-----PDHDVLLAGFPCQPFSQAG 83
          ++        DV++ G PCQ FSQ G
Sbjct: 61 NVFCPYVGKIDVIIGGPPCQGFSQKG 86


>gi|462651|sp|P34906|MTF1_FUSNU RecName: Full=Modification methylase FnuDI; Short=M.FnuDI;
          AltName: Full=Cytosine-specific methyltransferase FnuDI
 gi|2961231|gb|AAC05695.1| FnuDI DNA modification methyltransferase [Fusobacterium
          nucleatum]
          Length = 344

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  E+       E   ++E +    +TY+ N    LI  DI +I +
Sbjct: 1  MKLLSLFSGAGGLDLGFERA----GFEIIVANEYDKTIWETYEKNHKAKLIKKDIREILS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +++P  D ++ G PCQ +S+AG
Sbjct: 57 EELPKSDGIIGGPPCQSWSEAG 78


>gi|262381005|ref|ZP_06074143.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_33B]
 gi|262296182|gb|EEY84112.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 306

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF G+GG  L  E        E  F  EIN +  K  + +FP ++ + DI +  T   P 
Sbjct: 6  LFSGVGGFDLAAEWM----GWENLFHCEINEWCQKVLRFHFPKSIQYDDITR--TDFTPW 59

Query: 66 --DHDVLLAGFPCQPFSQAG 83
              DVL  GFPCQPFS AG
Sbjct: 60 RGKVDVLTGGFPCQPFSVAG 79


>gi|86159861|ref|YP_466646.1| DNA-cytosine methyltransferase [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85776372|gb|ABC83209.1| DNA-cytosine methyltransferase [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 380

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +  LF GIGG+ L + ++ +H  + C    E +  +     A FP     GDI  + 
Sbjct: 1  MLSVAGLFAGIGGLELGMARSGHHTKLLC----ENDACARAVLDARFPEVPKHGDIRTL- 55

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           + +P D  ++ AGFPCQ  SQAG
Sbjct: 56 -ERLPKDTSLVTAGFPCQDLSQAG 78


>gi|323650451|gb|ADX97303.1| M.FseI [Frankia sp. Eul1b]
          Length = 374

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLFCG GG+ L   Q       +   S + +  S++T++ANFP   I  DI      D
Sbjct: 28  LIDLFCGAGGMTLGFMQA----GFQPILSIDHDLPSIETHRANFPGMSICTDIRDF--VD 81

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
            P  DV++ G PCQ FS+ G
Sbjct: 82  FPSADVVVGGPPCQGFSRLG 101


>gi|312142618|ref|YP_003994064.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311903269|gb|ADQ13710.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 406

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFP-----NTLIF 53
          + +LF G+GG RL LE++      +  + ++  P     ++ + Y  NF      N    
Sbjct: 5  VCELFAGVGGFRLGLEKS--SEEWKTVWMNQWEPTRKSQWAYECYIENFGKDKAINLFSN 62

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+++ T  IPDH++L+ GFPCQ +S A
Sbjct: 63 TDISEVDTSVIPDHNLLVGGFPCQDYSVA 91


>gi|317181803|dbj|BAJ59587.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 351

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|150024829|ref|YP_001295655.1| modification methyltransferase Sau3AI [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771370|emb|CAL42839.1| Probable modification methyltransferase Sau3AI [Flavobacterium
           psychrophilum JIP02/86]
          Length = 431

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 25/102 (24%)

Query: 2   LKITDLFCGIGGIRLDLE------QTFNHR-----NVECFFSSEINP----------YSV 40
           +K+ +LF G+GG RL LE       + N++     + E  +S++  P          Y  
Sbjct: 5   IKVVELFAGVGGFRLGLEGWNNKSASSNYKENFESSYEIVWSNQWEPSTKVQHASMVYET 64

Query: 41  KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           +  + N  N     DI+ ++   IPDHD+L+ GFPCQ +S A
Sbjct: 65  RWDKKNHCNQ----DISTVEVDIIPDHDLLVGGFPCQDYSVA 102


>gi|329123496|ref|ZP_08252060.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
 gi|327471078|gb|EGF16533.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
          Length = 133

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L     F         ++E +    KTY++N    LI GDI+KI +
Sbjct: 21 MNLISLFSGAGGLDLG----FQKAGFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 76

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 77 DEFPKCDGIIGGPPCQSWSEGG 98


>gi|124009653|ref|ZP_01694325.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123984703|gb|EAY24688.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 354

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L   Q     NV   F+ E NP+     +  +P+T+ + DI   + 
Sbjct: 1  MRHASLFSGLGGFDL-AAQRMGWTNV---FTVENNPFCQTILRHYWPDTIHYEDI---RQ 53

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
           D   H    D+L  GFPCQPFSQAG
Sbjct: 54 TDFTPHYGQIDLLTGGFPCQPFSQAG 79


>gi|288922732|ref|ZP_06416903.1| C-5 cytosine-specific DNA methylase [Frankia sp. EUN1f]
 gi|288345909|gb|EFC80267.1| C-5 cytosine-specific DNA methylase [Frankia sp. EUN1f]
          Length = 174

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  L  G GG+ L + Q    R     + ++ +P + +    ++P+    GDI  +  
Sbjct: 8  LRVGSLCSGYGGLDLAVHQVIGGR---LAWVADPDPGAARILARHWPDVPNHGDITAVDW 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L AGFPCQP+S AG
Sbjct: 65 TTVEPIDLLTAGFPCQPWSDAG 86


>gi|315574420|gb|EFU86611.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0309B]
          Length = 386

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK--- 60
          DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +  +  +   DI  +    
Sbjct: 9  DLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSVSDEF 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 65 IQSLGPVDILCGGFPCQAFSIAG 87


>gi|294668765|ref|ZP_06733858.1| modification methylase BsuRI [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309282|gb|EFE50525.1| modification methylase BsuRI [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 313

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          M     LF G GG       T  HR  ++   +++I PY+   Y AN P T  I  D+ K
Sbjct: 1  MATAVSLFSGCGG-----SDTGVHRLGIDILMANDIIPYARDVYLANLPQTDYILKDVRK 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +++   P  D+LL  +PCQ FSQ G
Sbjct: 56 LES--FPSADLLLGCYPCQGFSQGG 78


>gi|261839303|gb|ACX99068.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori 52]
          Length = 348

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|188527268|ref|YP_001909955.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|188143508|gb|ACD47925.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
          Length = 348

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|317179147|dbj|BAJ56935.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 351

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|227553877|ref|ZP_03983924.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis HH22]
 gi|307285310|ref|ZP_07565454.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0860]
 gi|227176989|gb|EEI57961.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis HH22]
 gi|306502887|gb|EFM72149.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0860]
          Length = 380

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK--- 60
          DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +  +  +   DI  +    
Sbjct: 5  DLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSVSDEF 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 61 IQSLGPVDILCGGFPCQAFSIAG 83


>gi|325285907|ref|YP_004261697.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321361|gb|ADY28826.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ GDI    
Sbjct: 75  FKVLELFAGAGGLAVGLEKA----GIKCVALNEIDKWACQTLRENRPHWNVLEGDIKSFN 130

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
             +  +  D++  GFPCQ FS AG
Sbjct: 131 FSEYNNQVDIVTGGFPCQAFSYAG 154


>gi|315586449|gb|ADU40830.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori
          35A]
          Length = 351

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPHFELIWANDIDKDAILSYQANHRKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             + P    D+LL G PCQ +S  G
Sbjct: 58 NCHNFPCVSIDILLGGPPCQSYSTLG 83


>gi|315580106|gb|EFU92297.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0309A]
          Length = 382

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK--- 60
          DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +  +  +   DI  +    
Sbjct: 5  DLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSVSDEF 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 61 IQSLGPVDILCGGFPCQAFSIAG 83


>gi|296448772|ref|ZP_06890624.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
 gi|296253709|gb|EFH00884.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
          Length = 297

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGG+ L L +  +    EC   +E  P +     A FP     GDIA ++ 
Sbjct: 1  MKTVGLFAGIGGLELGLARAGH----ECLLVAENWPLAAGVLAARFPGLPNAGDIASLRR 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
            +P   +++ AGFPCQ  SQAG
Sbjct: 57 --LPGGTELVAAGFPCQDLSQAG 77


>gi|227517066|ref|ZP_03947115.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis TX0104]
 gi|255975250|ref|ZP_05425836.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T2]
 gi|227075490|gb|EEI13453.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis TX0104]
 gi|255968122|gb|EET98744.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T2]
          Length = 384

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK--- 60
          DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +  +  +   DI  +    
Sbjct: 9  DLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSVSDEF 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 65 IQSLGPVDILCGGFPCQAFSIAG 87


>gi|332361999|gb|EGJ39801.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK49]
          Length = 480

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 29  MKFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 81

Query: 62  QDIPDH---------DVLLAGFPCQPFSQAG 83
           +D+ D          D++  GFPCQ FS AG
Sbjct: 82  RDVSDDEFKKLRGKVDIICGGFPCQAFSIAG 112


>gi|327474139|gb|EGF19549.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK408]
          Length = 480

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 29  LRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 81

Query: 62  QDIPDH---------DVLLAGFPCQPFSQAG 83
           +D+ D          D++  GFPCQ FS AG
Sbjct: 82  RDVSDDEFKKLRGKVDIICGGFPCQAFSIAG 112


>gi|317012300|gb|ADU82908.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Lithuania75]
          Length = 348

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|126700764|ref|YP_001089661.1| putative DNA-methyltransferase [Clostridium difficile 630]
 gi|115252201|emb|CAJ70040.1| putative DNA-methyltransferase [Clostridium difficile]
          Length = 541

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M  + DLF G GG+ L  E T    N+  F   E N  + KTY  N P+   + DI ++ 
Sbjct: 1  MYNVIDLFAGAGGLSLGFEMT-KKFNMVAFV--EKNDNAAKTYLENHPSVKRYCDIKRLD 57

Query: 61 TQDIPDH----DVLLAGFPCQPFSQA 82
           QDI +     DV++ G PCQ FS A
Sbjct: 58 FQDILNSVDKIDVVIGGPPCQGFSNA 83


>gi|317180646|dbj|BAJ58432.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 348

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|303274236|ref|XP_003056440.1| cytosine-specific DNA methylase [Micromonas pusilla CCMP1545]
 gi|226462524|gb|EEH59816.1| cytosine-specific DNA methylase [Micromonas pusilla CCMP1545]
          Length = 1085

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGG+ L LE+  +    E     E +P+ V+  Q  FP   +  D+A+++ 
Sbjct: 1  MKTVSLFSGIGGLDLGLEEAGH----EVILQVENDPHCVQVLQRQFPGKALARDVAEVR- 55

Query: 62 QDIPDH-DVLLAGFPCQPFSQA 82
           D+P+  ++L AGFPC   S +
Sbjct: 56 -DLPEETELLAAGFPCPDVSTS 76


>gi|91215328|ref|ZP_01252299.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
 gi|91186280|gb|EAS72652.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
          Length = 412

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ + LEQ+     ++C   +EI+ ++ +T + N P+  ++ GDI     +
Sbjct: 78  VLELFAGAGGLAIGLEQS----GIKCTALNEIDKWACQTLRTNRPSWNILEGDIKNFDFR 133

Query: 63  DIPDH-DVLLAGFPCQPFSQAG 83
              +  D++  GFPCQ FS AG
Sbjct: 134 QYENKVDIVTGGFPCQAFSYAG 155


>gi|322385307|ref|ZP_08058952.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
 gi|321270566|gb|EFX53481.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
          Length = 480

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 29  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 81

Query: 62  QDIPDH---------DVLLAGFPCQPFSQAG 83
           +D+ D          DV+  GFPCQ FS AG
Sbjct: 82  RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 112


>gi|158320884|ref|YP_001513391.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141083|gb|ABW19395.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 329

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  E+       +   ++E +    +TY+ N    LI GDI +I +
Sbjct: 1  MKLISLFSGAGGMDLGFEKA----GFKVIAANEYDKTIWETYEKNHNAPLIKGDIREIAS 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
           D PD  D ++ G PCQ +S+AG
Sbjct: 57 GDFPDDCDGIIGGPPCQSWSEAG 79


>gi|317009105|gb|ADU79685.1| type II DNA modification [Helicobacter pylori India7]
          Length = 348

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|310830456|ref|YP_003965557.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
 gi|309249923|gb|ADO59489.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
          Length = 156

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L + DLFCG G         F     +   + +   Y+V TY  N  N  I  +I  + +
Sbjct: 36  LTMIDLFCGAG----IGASGFLLAGYKIISAVDNQKYAVDTYNRNIENHAICANIRFLNS 91

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            ++PD DV+  GFPCQPFS +G
Sbjct: 92  NELPDADVISGGFPCQPFSFSG 113


>gi|238801891|ref|YP_002925094.1| putative DNA methylase [Streptococcus phage 5093]
 gi|238558577|gb|ACR45907.1| putative DNA methylase [Streptococcus phage 5093]
          Length = 319

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A  N    +   DI ++
Sbjct: 1  MKFIDLFAGIGGFRLGMESAGH----ECVGFCEIDKFARASYKAIHNTEGEIELHDITQV 56

Query: 60 ---KTQDIPDHDVLLAGFPCQPFSQAG 83
             + ++I   D +  GFPCQ FS AG
Sbjct: 57 TDDEIREIGHVDAICGGFPCQAFSIAG 83


>gi|325288246|ref|YP_004264427.1| C-5 cytosine-specific DNA methylase [Syntrophobotulus glycolicus
          DSM 8271]
 gi|324963647|gb|ADY54426.1| C-5 cytosine-specific DNA methylase [Syntrophobotulus glycolicus
          DSM 8271]
          Length = 90

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+ +  LF GIGG  L       H  +   ++SEI  + ++  +  FP  L  GDI K+ 
Sbjct: 1  MMTMGSLFDGIGGFPL----VAVHNGITPLWASEIEAFPIEVTKIRFPEMLHVGDITKLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
             +P  DV+  G PCQ +++
Sbjct: 57 GAALPLVDVICGGSPCQDYAE 77


>gi|323512819|gb|ADX88273.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2006_D]
 gi|323513047|gb|ADX88500.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2006_C]
          Length = 332

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G+   R+ LE+      V  +++SEI+  ++K  QAN+P+ +  GD+ K + 
Sbjct: 1  MNVLSLFDGMACCRIALERA--GIQVGNYYASEIDKNAIKVAQANWPDNIQLGDVTKWQE 58

Query: 62 Q--DIPDHDVLLAGFPCQPFSQAG 83
             D    D++  GFPCQ +S AG
Sbjct: 59 WGIDWASIDLVTGGFPCQAWSIAG 82


>gi|312386601|emb|CBY05924.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|311977245|gb|ADQ20501.1| M2.BfuAI [Lysinibacillus fusiformis]
          Length = 342

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
          +K+ DLFCG GG+ L     F     E   + + NP   KT++ NFP    F D      
Sbjct: 1  MKVVDLFCGAGGLHLG----FQEAGFEIKLAVDSNPIVAKTHEFNFPEIPFFSDDINQLT 56

Query: 56 ----IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 I+ ++I   DVL+ G PCQ FS  G
Sbjct: 57 GFELFNLIEGEEI---DVLIGGPPCQGFSTIG 85


>gi|169832810|ref|YP_001694558.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995312|gb|ACA35924.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|168821212|ref|ZP_02833212.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205342142|gb|EDZ28906.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|320088731|emb|CBY98489.1| C-5 cytosine-specific DNA methylase family protein [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 361

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +++  LF G GG+   +         +  F++++   + KT    FP+T I  GDI++I 
Sbjct: 12 IRVLSLFSGCGGMDFGITSAGG----DIVFANDVVENACKTLGNYFPDTDIRHGDISQI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  PD D+++ G+PCQ FS AG
Sbjct: 67 -QSFPDVDIVVGGYPCQSFSMAG 88


>gi|229187780|ref|ZP_04314910.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228595683|gb|EEK53373.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 365

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF GIGG RL +E    H+   C    EI+ ++ K+Y+A  N        DI  +
Sbjct: 3  LTFIDLFAGIGGFRLGMEAA-GHK---CLGYVEIDKFARKSYEAIHNTKGEWTAHDITTV 58

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 59 TNDDLRLLRGTVDVICGGFPCQAFSIAG 86


>gi|319776343|ref|YP_004138831.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
 gi|127460|sp|P20589|MTH3_HAEAE RecName: Full=Modification methylase HaeIII; Short=M.HaeIII;
          AltName: Full=Cytosine-specific methyltransferase
          HaeIII
 gi|148915|gb|AAA24970.1| methyltransferase [Haemophilus aegyptius]
 gi|2961233|gb|AAC05696.1| HaeIII DNA modification methyltransferase [Haemophilus influenzae
          biotype aegyptius]
 gi|317450934|emb|CBY87160.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
          Length = 330

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|326204903|ref|ZP_08194756.1| DNA-cytosine methyltransferase [Clostridium papyrosolvens DSM
          2782]
 gi|325984952|gb|EGD45795.1| DNA-cytosine methyltransferase [Clostridium papyrosolvens DSM
          2782]
          Length = 569

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +  LF GIGG  +  + Q F        ++SEI  + +   +  FP  L  GDI K+K
Sbjct: 5  ITVGSLFDGIGGFPMAGIRQGFIP-----VWASEIEAFPIAVTKLRFPQMLHVGDITKLK 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +P  DV+  G PCQ  S AG
Sbjct: 60 GETLPQVDVVCGGSPCQDLSVAG 82


>gi|319897026|ref|YP_004135221.1| modification methylase haeiii [Haemophilus influenzae F3031]
 gi|317432530|emb|CBY80890.1| Modification methylase HaeIII [Haemophilus influenzae F3031]
          Length = 330

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|157265308|ref|YP_001467867.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|157265426|ref|YP_001467984.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
 gi|156905203|gb|ABU96847.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|156905321|gb|ABU96964.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
          Length = 368

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 4  ITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI 56
          +  LF G GG+ L        L +T+     +   + + N  +V TY AN        D+
Sbjct: 10 VLSLFSGAGGMDLGFTGGFTFLGKTYPRTGFKVVKAYDNNRRAVDTYNANLDPVAELKDV 69

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++  +IP  DV++ GFPCQ FS AG
Sbjct: 70 TTLQDHEIPSVDVVIGGFPCQDFSLAG 96


>gi|291543312|emb|CBL16421.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 668

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L       +  ++  + SEI PY+V       P+   +GD++K+  
Sbjct: 6  LTLGSLFSGSGGFEL----AGIYAGIKPVWLSEIEPYAVLVTHNRLPDVKHYGDVSKLSG 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P  D++  G PCQ  S AG
Sbjct: 62 ADLPPVDIITFGSPCQDMSIAG 83


>gi|210134686|ref|YP_002301125.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132654|gb|ACJ07645.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 160

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+     +   H + E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSK---HPHFELIWANDIDKDAILSYQANHKEAQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|1127162|pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound
          To Dna
 gi|1127163|pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound
          To Dna
          Length = 324

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|240118874|ref|ZP_04732936.1| DcmB [Neisseria gonorrhoeae PID1]
          Length = 325

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP 65
          +F G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK +D P
Sbjct: 1  MFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIKEEDFP 56

Query: 66 DH-DVLLAGFPCQPFSQAG 83
          +  D ++ G PCQ +S+AG
Sbjct: 57 EEIDGIIGGPPCQSWSEAG 75


>gi|240081638|ref|ZP_04726181.1| DcmB [Neisseria gonorrhoeae FA19]
 gi|240113919|ref|ZP_04728409.1| DcmB [Neisseria gonorrhoeae MS11]
 gi|240116652|ref|ZP_04730714.1| DcmB [Neisseria gonorrhoeae PID18]
 gi|240129088|ref|ZP_04741749.1| DcmB [Neisseria gonorrhoeae SK-93-1035]
          Length = 325

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 6/79 (7%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP 65
          +F G GG+ L  E+       E   ++E +     T++AN P T LI GDI KIK +D P
Sbjct: 1  MFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIKEEDFP 56

Query: 66 DH-DVLLAGFPCQPFSQAG 83
          +  D ++ G PCQ +S+AG
Sbjct: 57 EEIDGIIGGPPCQSWSEAG 75


>gi|254779148|ref|YP_003057253.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
 gi|254001059|emb|CAX29005.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
          Length = 348

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSV---HSHFELIWANDIDKDAILSYQANHKEVQTILCDIVQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPRVSIDILLGGPPCQSYSTLG 83


>gi|183217290|gb|ACC59209.1| methyltransferase [Streptococcus pneumoniae]
 gi|321156848|emb|CBW38835.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|255972594|ref|ZP_05423180.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256762698|ref|ZP_05503278.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257422413|ref|ZP_05599403.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
 gi|255963612|gb|EET96088.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256683949|gb|EEU23644.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257164237|gb|EEU94197.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
          Length = 351

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|4063721|gb|AAC98421.1| methyl transferase [Streptococcus pneumoniae]
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|254413040|ref|ZP_05026812.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196180204|gb|EDX75196.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 355

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 4  ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKT 61
          I  LF G GG+ L   Q  FN       +++E +    +TYQ+N PNT +   DI  + +
Sbjct: 11 IVSLFSGCGGLDLGFRQAGFN-----VVWANEYDKDIWQTYQSNHPNTFLDRRDIRHVPS 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPD   ++ G PCQ +S+AG
Sbjct: 66 ADIPDCFGIVGGPPCQSWSEAG 87


>gi|332075476|gb|EGI85945.1| modification methylase HpaII [Streptococcus pneumoniae GA41301]
          Length = 452

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          DV+  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGEVDVICGGFPCQAFSIAG 84


>gi|20530828|gb|AAM27270.1|AF507962_1 methyl transferase [Lactococcus lactis]
          Length = 185

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+A  N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQSFSIAG 84


>gi|30089875|ref|NP_839905.1| putative methylase [Lactococcus phage P335 sensu lato]
 gi|21954664|gb|AAM83053.1|AF489521_14 putative methylase [Lactococcus phage 4268]
          Length = 185

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+A  N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQAFSIAG 84


>gi|168205340|ref|ZP_02631345.1| putative modification methylase Eco47II [Clostridium perfringens E
           str. JGS1987]
 gi|170663208|gb|EDT15891.1| putative modification methylase Eco47II [Clostridium perfringens E
           str. JGS1987]
          Length = 437

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           ++++  +F G G     L+  F+  ++ +  F+S+I   + ++Y+ N  N ++   I +I
Sbjct: 118 IIRVVSMFSGAGM----LDYAFHKDQDFKIVFASDIMKEACESYRENIGNHIVNKSITEI 173

Query: 60  KTQDIPDHDVLLAGFPCQPFSQA 82
            + +IP  DV+L G PC+PFS A
Sbjct: 174 NSNEIPVADVILGGVPCKPFSNA 196


>gi|126659133|ref|ZP_01730272.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
          CCY0110]
 gi|126619540|gb|EAZ90270.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
          CCY0110]
          Length = 346

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          F +   +  ++++I+  + +TY+ N  N ++  DIA I  +DIP  D+++ GFPCQ FS
Sbjct: 5  FVNAGYKIIWANDIDSDACQTYKNNIGNHIVKSDIANINLKDIPKCDIIIGGFPCQDFS 63


>gi|288906872|emb|CBJ21706.1| type II DNA modification methyltransferase [Streptococcus mitis
          B6]
          Length = 380

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E    H+   C    EI+ ++ ++Y+A  N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESA-GHK---CIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|113478170|ref|YP_724231.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169218|gb|ABG53758.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 379

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L     F++   +  ++ + + Y+ +T++ N  N +    I  I   
Sbjct: 16 KIISLFSGCGGMDL----PFHYTGFKLVWAIDSDLYACRTFRRNISNIIENNQIENINIA 71

Query: 63 DIPDHDVLLAGFPCQPFS 80
          ++P+ D+++ GFPCQ FS
Sbjct: 72 EVPEADLIIGGFPCQDFS 89


>gi|218133430|ref|ZP_03462234.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990805|gb|EEC56811.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
          43243]
          Length = 320

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIKTQD 63
          DL  GIGG RL LE T  H+   C    E + ++  +Y+A +     +   D+ K+K +D
Sbjct: 8  DLCSGIGGFRLGLE-TAGHK---CIGYCEYDKFARASYEAMYDTEGEWKAHDVTKLKPED 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+   GFPCQ  S AG
Sbjct: 64 VPYADIWCFGFPCQDISVAG 83


>gi|154504826|ref|ZP_02041564.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC
          29149]
 gi|153794709|gb|EDN77129.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC
          29149]
          Length = 422

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIKTQD 63
          DL  GIGG RL LE T  H+   C    E + ++  +Y+A +     +   D+ K+K +D
Sbjct: 8  DLCSGIGGFRLGLE-TAGHK---CIGYCEYDKFARASYEAMYDTEGEWKAHDVTKLKPED 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+   GFPCQ  S AG
Sbjct: 64 VPYADIWCFGFPCQDISVAG 83


>gi|15897209|ref|NP_341814.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus P2]
 gi|284174455|ref|ZP_06388424.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus 98/2]
 gi|13813404|gb|AAK40604.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus P2]
 gi|261601877|gb|ACX91480.1| DNA-cytosine methyltransferase [Sulfolobus solfataricus 98/2]
          Length = 325

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ++KI DLF G GG  L     F    +E   + +IN  + +TY  NFPNT++   DI +I
Sbjct: 3  LIKIIDLFSGAGGFSL----GFKKLGIEPKLAIDINHAATRTYSLNFPNTIVIEDDIREI 58

Query: 60 KTQDI-----PDHDVLLAGFPCQPFSQA 82
             +I      D DV++ G PC+ ++ A
Sbjct: 59 SGGEILKNVGNDIDVVIGGPPCEGYTAA 86


>gi|62390655|ref|YP_226057.1| modification methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324545|dbj|BAB99169.1| Site-specific DNA methylase or type II 5-cytosine
          methyltransferase [Corynebacterium glutamicum ATCC
          13032]
 gi|41325993|emb|CAF20156.1| MODIFICATION METHYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 363

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK--T 61
          I   F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I   T
Sbjct: 7  IVSTFSGCGGLDLGLQEV----GFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPFT 62

Query: 62 QD-IPDHDVLLAGFPCQPFS 80
           D IPD D++  GFPCQ FS
Sbjct: 63 DDTIPDGDLVTGGFPCQDFS 82


>gi|321156918|emb|CBW38908.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          D++  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|332652901|ref|ZP_08418646.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium
          D16]
 gi|332518047|gb|EGJ47650.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium
          D16]
          Length = 542

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF G GG+ L   QT  + +++  F  E +PY  +TY+ N P   + GD+     +DI 
Sbjct: 8  DLFAGAGGLSLGFMQTQKY-DIKVAF--ENSPYMQETYRQNHPGVEVQGDVCTADYEDIM 64

Query: 66 DH----DVLLAGFPCQPFSQA 82
                DV++ G PCQ FS A
Sbjct: 65 RRYGKIDVVIGGPPCQGFSNA 85


>gi|1808696|gb|AAC00045.1| putative type II 5-cytosoine methyltransferase [Corynebacterium
          glutamicum]
          Length = 363

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 7/80 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK--T 61
          I   F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I   T
Sbjct: 7  IVSTFSGCGGLDLGLQEV----GFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPFT 62

Query: 62 QD-IPDHDVLLAGFPCQPFS 80
           D IPD D++  GFPCQ FS
Sbjct: 63 DDTIPDGDLVTGGFPCQDFS 82


>gi|310657624|ref|YP_003935345.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
          519]
 gi|308824402|emb|CBH20440.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 326

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 4  ITDLFCGIGGIRLDL-------EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI 56
          +  LFCG GG  + L       + ++   ++E  ++++I+  + + ++ NF       DI
Sbjct: 1  MASLFCGCGGTDVGLLGGFKFLDNSYAKNDMEIVYANDIDINACRIFEENFDIMPDNRDI 60

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFS 80
           ++ + ++P+ D+L  GFPCQ FS
Sbjct: 61 REVASNELPEFDILTGGFPCQSFS 84


>gi|146305026|ref|YP_001192342.1| DNA-cytosine methyltransferase [Metallosphaera sedula DSM 5348]
 gi|145703276|gb|ABP96418.1| DNA-cytosine methyltransferase [Metallosphaera sedula DSM 5348]
          Length = 313

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K+ DLF G GG      + F     +   + EIN  + +TY ANFP T++   DI +I  
Sbjct: 5  KVVDLFSGAGG----FGRGFKEVGFQIGVAVEINHAAARTYSANFPTTIVLEEDIREITG 60

Query: 62 QDI-----PDHDVLLAGFPCQPFSQA 82
          ++I      + DV++   PC+PF+ A
Sbjct: 61 REIVREIGKEPDVVIGSPPCEPFTAA 86


>gi|261837889|gb|ACX97655.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 348

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDNDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|228969065|ref|ZP_04129983.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228790631|gb|EEM38314.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 326

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF GIGG RL +EQ   H+   C    E + ++ K+Y+A  N        DI  +
Sbjct: 3  LTFIDLFAGIGGFRLGMEQA-GHK---CLGYVEWDKFARKSYEAIHNTKGEWTEHDITTV 58

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 59 TNDDLRLFRGQVDVICGGFPCQAFSIAG 86


>gi|154497795|ref|ZP_02036173.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
          29799]
 gi|150273293|gb|EDN00438.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
          29799]
          Length = 222

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQD 63
          +F GIGG R  L +       +C    EI+ Y+  +Y+A          + D  +I   D
Sbjct: 1  MFAGIGGFRAGLARAGG---FQCVGHCEIDKYADASYRAIHDIREEERYYPDAREIDPGD 57

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D+L  GFPCQ FS AG
Sbjct: 58 LPDFDLLCGGFPCQAFSLAG 77


>gi|15616070|ref|NP_244375.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
 gi|10176132|dbj|BAB07227.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
          Length = 326

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF G GG+ +  E+       +  ++++I+  +  T++      ++ GDI+KI    IP 
Sbjct: 11 LFSGAGGLDMGFERI----GFKIIWANDIDEDACATHRLWSDAEVVQGDISKIDVSTIPS 66

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+LL G+PCQ FS AG
Sbjct: 67 ADILLGGWPCQGFSLAG 83


>gi|315162212|gb|EFU06229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0645]
          Length = 398

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|315035876|gb|EFT47808.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0027]
          Length = 298

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +   +I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIREIGSVDVICGGFPCQAFSIAG 83


>gi|182684309|ref|YP_001836056.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae CGSP14]
 gi|221232093|ref|YP_002511246.1| DNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|182629643|gb|ACB90591.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae CGSP14]
 gi|220674554|emb|CAR69117.1| putative DNA methylase [Streptococcus pneumoniae ATCC 700669]
          Length = 452

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          D++  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|111220172|ref|YP_710966.1| putative DNA modification methylase [Frankia alni ACN14a]
 gi|111147704|emb|CAJ59362.1| putative DNA Modification methylase (Cytosine-specific
           methyltransferase) [Frankia alni ACN14a]
          Length = 401

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           I DLFCG GG+ L   Q           + + +  S+ T++ANFP   +  DI  +   D
Sbjct: 57  IIDLFCGAGGMSLGFVQA----GFSPILAIDHDQPSIDTHRANFPGDSLCVDIRDV--SD 110

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
            P  DV++ G PCQ FS+ G
Sbjct: 111 FPAADVVIGGPPCQGFSRLG 130


>gi|307290179|ref|ZP_07570098.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0411]
 gi|306498807|gb|EFM68305.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0411]
          Length = 416

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|257081612|ref|ZP_05575973.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|256989642|gb|EEU76944.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
          Length = 398

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRRIGSVDVICGGFPCQAFSIAG 83


>gi|225863800|ref|YP_002749178.1| cytosine-specific methyltransferase NlaX [Bacillus cereus
          03BB102]
 gi|225788166|gb|ACO28383.1| cytosine-specific methyltransferase NlaX [Bacillus cereus
          03BB102]
          Length = 576

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG RL +EQ   H+   C    E + ++ K+Y+A  N        DI  +
Sbjct: 1  MNFIDLFAGIGGFRLGMEQA-GHK---CLGYVEKDKFARKSYEAIHNTKGEWTAHDITAV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 57 TNDDLRLLRGQVDVICGGFPCQAFSIAG 84


>gi|208434405|ref|YP_002266071.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432334|gb|ACI27205.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 348

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSI---HPYFELIWANDIDRDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|323484104|ref|ZP_08089474.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
          WAL-14163]
 gi|323402546|gb|EGA94874.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
          WAL-14163]
          Length = 430

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          L   DL  GIGG RL LE    H+   C    E + Y+  +Y+A +         D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLEAA-GHK---CIGYCEYDKYARASYEAMYDAKGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+   GFPCQ  S AG
Sbjct: 60 KPGDIPYADIWTFGFPCQDISIAG 83


>gi|124004276|ref|ZP_01689122.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123990346|gb|EAY29845.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 391

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L  E+     NV   F+ E NP+     +  +P+T  + DI   + 
Sbjct: 1  MRHASLFSGMGGFDLAAER-MGWVNV---FTVENNPFCQTILRHYWPDTTHYEDI---RQ 53

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
           D   H    D+L  GFPCQPFSQAG
Sbjct: 54 TDFTPHYGQIDLLTGGFPCQPFSQAG 79


>gi|251811836|ref|ZP_04826309.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282875124|ref|ZP_06283997.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          SK135]
 gi|251804633|gb|EES57290.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281295889|gb|EFA88410.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          SK135]
          Length = 329

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 15/87 (17%)

Query: 6  DLFCGIGGIRL--DLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          DLF G GG+ L  DLE     +NV   FS E +  + +TY+ NFPN  LI  DI +I T 
Sbjct: 7  DLFSGAGGMSLGFDLE---GFKNV---FSVEYDLQTAQTYRYNFPNHVLINKDIQEISTN 60

Query: 63 DIPD------HDVLLAGFPCQPFSQAG 83
          +I         DV++ G PCQ FS AG
Sbjct: 61 EIKKIINNNTVDVIIGGPPCQGFSLAG 87


>gi|194396841|ref|YP_002037999.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
          pneumoniae G54]
 gi|194356508|gb|ACF54956.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
          pneumoniae G54]
          Length = 452

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLF GIGG RL +E +  H   EC    EI+ ++ ++Y++ F      G+I     
Sbjct: 1  MRFIDLFSGIGGFRLGME-SVGH---ECIGFCEIDKFARESYKSIFQTE---GEIEFHDI 53

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          +D+ D          D++  GFPCQ FS AG
Sbjct: 54 RDVSDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|329768652|ref|ZP_08260136.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
 gi|328836366|gb|EGF86031.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
          Length = 427

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG RL +E+   H+   C    EI+ ++  +Y+   N  N + + DI ++
Sbjct: 1  MNFLDLFAGIGGFRLGMERA-GHK---CVGFCEIDKFARSSYKVMHNTENEIEYHDIKEV 56

Query: 60 KTQDI----PDHDVLLAGFPCQPFSQAG 83
            ++        DV+  GFPCQ FS AG
Sbjct: 57 TNEEFRKLRAKVDVICGGFPCQAFSIAG 84


>gi|229492462|ref|ZP_04386265.1| DNA-cytosine methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320448|gb|EEN86266.1| DNA-cytosine methyltransferase [Rhodococcus erythropolis SK121]
          Length = 387

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +   +  + C    EI+P +    ++ F +  + GD+ K++   +P 
Sbjct: 10 LFAGIGGLELGLSEHGWNTELLC----EIDPGAQAVLRSRFADVPLHGDVTKLRA--LPS 63

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 64 DIELVAAGFPCQDLSQAG 81


>gi|226303815|ref|YP_002763773.1| modification methylase [Rhodococcus erythropolis PR4]
 gi|226182930|dbj|BAH31034.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 392

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +   +  + C    EI+P +    ++ F +  + GD+ K++   +P 
Sbjct: 15 LFAGIGGLELGLSEHGWNTELLC----EIDPGAQAVLRSRFADVPLHGDVTKLRA--LPS 68

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 69 DIELVAAGFPCQDLSQAG 86


>gi|290891561|ref|ZP_06554618.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
 gi|290478814|gb|EFD87481.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
          Length = 382

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+A  N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQAFSIAG 84


>gi|182417652|ref|ZP_02948971.1| modification methylase Sau3AI [Clostridium butyricum 5521]
 gi|237668746|ref|ZP_04528730.1| modification methylase Sau3AI (Cytosine-specificmethyltransferase
          Sau3AI) (M.Sau3AI) [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182378376|gb|EDT75907.1| modification methylase Sau3AI [Clostridium butyricum 5521]
 gi|237657094|gb|EEP54650.1| modification methylase Sau3AI (Cytosine-specificmethyltransferase
          Sau3AI) (M.Sau3AI) [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 426

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNT-----LIF 53
          I +LF G+GG R+  E++      +  ++++  P     ++ + Y+++F  +        
Sbjct: 6  ICELFAGVGGFRVGFEKS--SPEWKTVWANQWEPSKKIQHAFECYKSHFETSGGIDEFSN 63

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+K+  + IPDH VL+ GFPCQ +S A
Sbjct: 64 TDISKVPEEHIPDHTVLVGGFPCQDYSVA 92


>gi|167758237|ref|ZP_02430364.1| hypothetical protein CLOSCI_00575 [Clostridium scindens ATCC 35704]
 gi|167664134|gb|EDS08264.1| hypothetical protein CLOSCI_00575 [Clostridium scindens ATCC 35704]
          Length = 418

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K+  LF GI   ++ LE+      +E + + EI+ Y++K  + N P+ +  GD+ K   
Sbjct: 21  MKVLSLFDGISCGKVALERA--GIQIEEYVAFEIDKYAIKISKKNHPDIIQRGDVTKADF 78

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            +    D+++ G PCQ FS AG
Sbjct: 79  SEFEGFDIVIGGSPCQGFSFAG 100


>gi|218441171|ref|YP_002379500.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173899|gb|ACK72632.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 415

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   + EINP    TY+ NFP  T+I   +A I+ ++I
Sbjct: 14 DLFAGAGGMSLGFEQA----GFDVLAAVEINPIHCATYEYNFPFWTIICRSVADIRGEEI 69

Query: 65 --------PDHDVLLAGFPCQPFSQAG 83
                   + DV+  G PCQ FS  G
Sbjct: 70 RQLSALKNQEIDVVFGGPPCQGFSLMG 96


>gi|296330570|ref|ZP_06873048.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674618|ref|YP_003866290.1| putative C-5 cytosine-specific DNA methylase [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296152252|gb|EFG93123.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412862|gb|ADM37981.1| putative C-5 cytosine-specific DNA methylase [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 298

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    NF    IF D+  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKVLNKNFRGVPIFDDVRTLNR 56

Query: 62 QDIPDH---------DVLLAGFPCQPFSQAG 83
          Q + +          D++  GFPCQP+S AG
Sbjct: 57 QLLEEKGVIEPGGTIDIISGGFPCQPYSIAG 87


>gi|1709158|sp|P50192|MTHA_HAEPH RecName: Full=Modification methylase HphIA; Short=M.HphIA; AltName:
           Full=Cytosine-specific methyltransferase HphIA; AltName:
           Full=M.Hphi(C)
 gi|732729|emb|CAA59690.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Haemophilus parahaemolyticus]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           L   DLF G GG  L  ++   H+      S EI P+   TY+ANFP+  +   D+  + 
Sbjct: 45  LTYIDLFSGAGGFSLGFDRAGFHQ----LLSVEIEPHYCDTYRANFPDHQVLQQDLTTLS 100

Query: 61  TQDIPDH------DVLLAGFPCQPFSQAG 83
             ++  H      DV++ G PCQ FS AG
Sbjct: 101 DDNLLRHINHRKVDVVIGGPPCQGFSMAG 129


>gi|294651999|ref|ZP_06729281.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
          ATCC 19194]
 gi|292822115|gb|EFF81036.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 336

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          LKI  LF G GG+ L  ++  FN       F++E +     TY+ N PNT L    I +I
Sbjct: 3  LKIVSLFSGAGGLDLGFQKAGFN-----ITFANEFDKDIWATYEYNHPNTHLDKRSITEI 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++P+ D ++ G PCQ +S+ G
Sbjct: 58 KENEVPECDGIIGGPPCQSWSEGG 81


>gi|331085742|ref|ZP_08334825.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406665|gb|EGG86170.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 425

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
          L   DL  GIGG RL LE    H+   C    E + ++  +Y+A +     +   D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLESA-GHK---CVGYCEYDKFARASYEAMYDTEGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D+P  D+   GFPCQ  S AG
Sbjct: 60 KPSDVPRADIWCFGFPCQDISVAG 83


>gi|327439466|dbj|BAK15831.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 286

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +H   EC    E + Y+ K+Y+A  N        DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMEMA-DH---ECIGYVEWDEYARKSYEAIHNTNGEWTEHDITGI 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            +   +     DV+  GFPCQ FS AG
Sbjct: 57 TDEQWREFKGEIDVICGGFPCQAFSVAG 84


>gi|260890220|ref|ZP_05901483.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
 gi|260859840|gb|EEX74340.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
          Length = 293

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 39 SVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + KT+  N  + L   DI  +K+ D+PD DV++ GFPCQ FS AG
Sbjct: 7  AAKTFLKNNDSKLAVDDIHNVKSTDVPDTDVIVGGFPCQAFSIAG 51


>gi|260664324|ref|ZP_05865177.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|260562210|gb|EEX28179.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
          Length = 298

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
          +K  DLF G+GG R  LE    H+   C    E + ++ K+YQA +     F   DI   
Sbjct: 1  MKFLDLFSGVGGFRTGLEAA-GHK---CVGFIEFDKFARKSYQAIYDTKDEFTKNDIRTT 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++PD  +   GFPCQ  S AG
Sbjct: 57 KGSELPDAGIWCFGFPCQDISIAG 80


>gi|56964613|ref|YP_176344.1| site-specific DNA-methyltransferase [Bacillus clausii KSM-K16]
 gi|56910856|dbj|BAD65383.1| site-specific DNA-methyltransferase [Bacillus clausii KSM-K16]
          Length = 286

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    ++P+  IF DI  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKILNKHWPDVPIFDDIKTLDK 56

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          +       D+   +++  GFPCQP+S AG
Sbjct: 57 KALEERGIDVGAIELITGGFPCQPYSVAG 85


>gi|291165856|gb|EFE27903.1| modification methylase EcoRII [Filifactor alocis ATCC 35896]
          Length = 375

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 17/91 (18%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--- 57
          +    DL  GIGGIR   E T + +N+    ++EI+ Y+  TYQ       ++G+ A   
Sbjct: 2  LFTTIDLCAGIGGIRKGFELTGHFKNL---VAAEIDRYACLTYQH------LYGEDADND 52

Query: 58 ----KIKTQ-DIPDHDVLLAGFPCQPFSQAG 83
              + KT  +   +DVLLAGFPCQ FS+AG
Sbjct: 53 LTSEEFKTALEGLHYDVLLAGFPCQTFSRAG 83


>gi|269122950|ref|YP_003305527.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
 gi|268314276|gb|ACZ00650.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
          Length = 328

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ L     F     +   ++E +    +TY+ N    LI GDI  I +
Sbjct: 1  MKIISLFSGAGGLDL----GFKKAGFDIVAANEFDKTIWETYEKNHKTHLIKGDICNIHS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P+ D ++ G PCQ +S+AG
Sbjct: 57 SMFPECDGIIGGPPCQSWSEAG 78


>gi|312903177|ref|ZP_07762357.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
 gi|310633053|gb|EFQ16336.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
          Length = 398

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDATGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|535137|emb|CAA56493.1| type II DNA-methyltransferase [Bacillus phage phi3T]
          Length = 326

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + +LFCG GG+       F     E   + +I+  +VK Y+ NF + +   DI +I    
Sbjct: 16 VLELFCG-GGLG---ATGFKSAGYEIVKALDIDKNAVKAYRHNFGDYVEQADINEIDIDS 71

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD DV+  G PCQ FS AG
Sbjct: 72 LPDTDVIFGGPPCQDFSVAG 91


>gi|149373126|ref|ZP_01892014.1| DcmB [unidentified eubacterium SCB49]
 gi|149354274|gb|EDM42843.1| DcmB [unidentified eubacterium SCB49]
          Length = 349

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          +KI   F G GG+ L  +Q  FN       +++E +    +TY+ N PNT++    I  I
Sbjct: 1  MKIVSFFAGAGGLDLGFQQAGFN-----VIWANEYDKEIWETYEKNHPNTILDKRSIVNI 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             ++P+ D ++ G PCQ +S+AG
Sbjct: 56 PADEVPECDGIIGGPPCQSWSEAG 79


>gi|239624728|ref|ZP_04667759.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521114|gb|EEQ60980.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 554

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF G GG+ L  +QT     V+   ++E N  + KTY+ NF    ++ D+  I   +
Sbjct: 25  VIDLFAGAGGLSLGFKQT---GQVKIIAAAENNLNARKTYKRNFKLARLYSDVRTIDYAE 81

Query: 64  IPDH----DVLLAGFPCQPFSQA 82
           + D     D+++ G PCQ FS A
Sbjct: 82  LQDTVGPVDIVIGGPPCQGFSNA 104


>gi|323475189|gb|ADX85795.1| DNA-cytosine methyltransferase [Sulfolobus islandicus REY15A]
 gi|323477921|gb|ADX83159.1| DNA-cytosine methyltransferase [Sulfolobus islandicus HVE10/4]
          Length = 325

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLF G GG  L     F    +E   + +IN  + +TY  NFPNT++   DI +I 
Sbjct: 4  IKVIDLFSGAGGFSL----GFKKLGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQA 82
           ++I  +     DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|229579730|ref|YP_002838129.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.G.57.14]
 gi|228010445|gb|ACP46207.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.G.57.14]
          Length = 325

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLF G GG  L     F    +E   + +IN  + +TY  NFPNT++   DI +I 
Sbjct: 4  IKVIDLFSGAGGFSL----GFKKLGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQA 82
           ++I  +     DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|300124212|gb|ADJ68008.1| M.BanII [Aneurinibacillus aneurinilyticus]
          Length = 385

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ--D 63
          LF G GG    ++  F +  V+   ++EI+ Y+  TYQAN P T    GDI  + ++  +
Sbjct: 10 LFSGAGG----MDVGFKNAGVKVLCANEIDKYASATYQANNPETKFKLGDIRDVYSELKE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
            + D++  G PCQ FS AG
Sbjct: 66 FKNIDIIFGGPPCQGFSVAG 85


>gi|229585366|ref|YP_002843868.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.27]
 gi|228020416|gb|ACP55823.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.27]
          Length = 325

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLF G GG  L     F    +E   + +IN  + +TY  NFPNT++   DI +I 
Sbjct: 4  IKVIDLFSGAGGFSL----GFKKLGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQA 82
           ++I  +     DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|227828127|ref|YP_002829907.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.14.25]
 gi|227830834|ref|YP_002832614.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.S.2.15]
 gi|229581602|ref|YP_002840001.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.N.15.51]
 gi|238620327|ref|YP_002915153.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.4]
 gi|284998349|ref|YP_003420117.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.D.8.5]
 gi|227457282|gb|ACP35969.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.S.2.15]
 gi|227459923|gb|ACP38609.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.14.25]
 gi|228012318|gb|ACP48079.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.N.15.51]
 gi|238381397|gb|ACR42485.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.4]
 gi|284446245|gb|ADB87747.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.D.8.5]
          Length = 325

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLF G GG  L     F    +E   + +IN  + +TY  NFPNT++   DI +I 
Sbjct: 4  IKVIDLFSGAGGFSL----GFKKLGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQA 82
           ++I  +     DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|168490143|ref|ZP_02714342.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae SP195]
 gi|183571468|gb|EDT91996.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae SP195]
 gi|321157174|emb|CBW39159.1| Cytosine-specific DNA methyltransferase [Streptococcus phage
          11865]
          Length = 360

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E    H+   C    EI+ ++ ++Y+A  N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESA-GHK---CIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|168494837|ref|ZP_02718980.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494899|ref|ZP_02719042.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494952|ref|ZP_02719095.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494999|ref|ZP_02719142.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575153|gb|EDT95681.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575203|gb|EDT95731.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575231|gb|EDT95759.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575300|gb|EDT95828.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
          Length = 360

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E    H+   C    EI+ ++ ++Y+A  N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESA-GHK---CIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|332668060|ref|YP_004450848.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
 gi|332336874|gb|AEE53975.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
          Length = 395

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQ 62
          + F GIG +RL LEQ       E  ++++I+P   K YQ +F    N    GDI ++  +
Sbjct: 15 EFFAGIGLMRLGLEQA----GWEITYANDIDPIKDKIYQNHFQDPQNHFQLGDIHQLDVK 70

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +IP   +  A FPC   S AG
Sbjct: 71 EIPYVTLATASFPCTDLSLAG 91


>gi|308182632|ref|YP_003926759.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori PeCan4]
 gi|308064817|gb|ADO06709.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori PeCan4]
          Length = 351

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHEEVQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|78000013|ref|YP_358798.1| putative methylase [Lactobacillus phage Lc-Nu]
 gi|37826042|gb|AAR04663.1| putative methylase [Lactobacillus phage Lc-Nu]
          Length = 261

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  +LF GIGGI L  +       +E     E   Y     Q ++P+  +F D+ K+  
Sbjct: 1  MRSLELFAGIGGIALAEQMA----GIEVAGLCEYADYPRAILQKHWPDVPLFKDVTKLDR 56

Query: 62 QDI------PDH-DVLLAGFPCQPFSQAG 83
          +++      PD  D++  GFPCQPFS AG
Sbjct: 57 EELTNAGISPDSIDIVSGGFPCQPFSIAG 85


>gi|218895988|ref|YP_002444399.1| cytosine-specific methyltransferase NlaX [Bacillus cereus G9842]
 gi|218540614|gb|ACK93008.1| cytosine-specific methyltransferase NlaX [Bacillus cereus G9842]
          Length = 348

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 1  MLKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +LK  DLF GIGG R  L   +  +   E     EI       Y   F     +I  D+ 
Sbjct: 2  ILKYLDLFAGIGGFRQALINSSLKNVKFEPIGYCEIEKKCQLVYNEIFGTDGEVIVDDVK 61

Query: 58 KIKTQD---------IPDHDVLLAGFPCQPFSQAG 83
          KI + D         +P+ D+LL GFPCQPFS  G
Sbjct: 62 KIFSPDMVNVDGSKKLPEFDLLLGGFPCQPFSNVG 96


>gi|19552978|ref|NP_600980.1| site-specific DNA methylase or [Corynebacterium glutamicum ATCC
          13032]
          Length = 356

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK--TQD-I 64
          F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I   T D I
Sbjct: 4  FSGCGGLDLGLQEV----GFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPFTDDTI 59

Query: 65 PDHDVLLAGFPCQPFS 80
          PD D++  GFPCQ FS
Sbjct: 60 PDGDLVTGGFPCQDFS 75


>gi|284051619|ref|ZP_06381829.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 443

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 18/88 (20%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDI 56
           DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF        PN    GD+
Sbjct: 18 VDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPN---LGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|291570812|dbj|BAI93084.1| cytosine-specific DNA methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 443

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 18/88 (20%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDI 56
           DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF        PN    GD+
Sbjct: 18 VDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPN---LGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|229551649|ref|ZP_04440374.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus rhamnosus
          LMS2-1]
 gi|229314967|gb|EEN80940.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus rhamnosus
          LMS2-1]
          Length = 283

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  +LF GIGGI L  +       +E     E   Y     Q ++P+  +F D+ K+  
Sbjct: 1  MRSLELFAGIGGIALAEQMA----GIEVAGLCEYADYPRTILQKHWPDVPLFKDVTKLDR 56

Query: 62 QDI------PDH-DVLLAGFPCQPFSQAG 83
          +++      PD  D++  GFPCQPFS AG
Sbjct: 57 EELTNAGISPDSIDIVSGGFPCQPFSIAG 85


>gi|158284395|ref|XP_306830.2| Anopheles gambiae str. PEST AGAP012836-PA [Anopheles gambiae str.
          PEST]
 gi|157021124|gb|EAA45924.2| AGAP012836-PA [Anopheles gambiae str. PEST]
          Length = 238

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ +LF GIGG+R+ LEQ    +  E   + ++NP + + Y+ NF   T+  G+I  +  
Sbjct: 16 RVLELFSGIGGMRMALEQA--GKEFEIVSAIDVNPIANEVYKHNFGAKTVRNGNILSLTA 73

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
          + +     D +L   PCQPF++ G
Sbjct: 74 EKVTKLKVDTILMSPPCQPFTRNG 97


>gi|124002907|ref|ZP_01687758.1| modification methylase PspPI [Microscilla marina ATCC 23134]
 gi|123991557|gb|EAY30965.1| modification methylase PspPI [Microscilla marina ATCC 23134]
          Length = 353

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L  E+     NV   F+ E NP+     +  +P+T  + DI +  T
Sbjct: 1  MRHASLFSGMGGFDLAAER-MGWVNV---FTVENNPFCQTILRHYWPDTTHYEDIRQ--T 54

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
             P +   D+L  GFPCQPFSQAG
Sbjct: 55 NFTPHYGQIDLLTGGFPCQPFSQAG 79


>gi|295103751|emb|CBL01295.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 412

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF---FSSEINP-----YSVKTYQANFPN--TL 51
          +++ +LF G+GG RL LEQ  +     CF   ++++  P     ++ + Y+ +F +    
Sbjct: 4  IRVVELFAGVGGFRLGLEQASS-----CFQTVWANQWEPSMRSQFAFECYERHFGHRPEH 58

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  DI   K  +IP HD+L+ GFPCQ +S A
Sbjct: 59 VCQDIVTAKG-NIPPHDLLVGGFPCQDYSIA 88


>gi|298714740|emb|CBJ25639.1| Cytosine-C5 specific DNA methyltransferase [Ectocarpus siliculosus]
          Length = 412

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSS-EINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           + + GIGG+R+ LE+     ++E    S EI+  +   Y+ NFP  ++    I  +  QD
Sbjct: 57  EFYSGIGGLRVSLEKALEAVSLETSVGSFEISSVANSVYEHNFPGCSVTRRSIEHLSAQD 116

Query: 64  IP-DHDVLLAGFPCQPFSQAG 83
           I  D D+ L   PCQPF + G
Sbjct: 117 IEVDADIWLLSPPCQPFCRVG 137


>gi|4033737|gb|AAC97190.1| modification methylase M.NspI [Nostoc sp. PCC 7524]
          Length = 397

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK------ 58
           DLFCG GGI   L Q       +   S EI+P +  T+Q NFP+   F GDI +      
Sbjct: 64  DLFCGAGGITQGLVQA----GFQALASVEISPIASATHQRNFPHCHHFWGDIEQFYPKSW 119

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++    P+ ++++ G PCQ FS AG
Sbjct: 120 LQQIGYPEVNLVVGGPPCQGFSVAG 144


>gi|313675860|ref|YP_004053856.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942558|gb|ADR21748.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 412

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ GDI     +
Sbjct: 76  VLELFAGAGGLAVGLEKA----GLKCQALNEIDKWACQTLRNNRPHWNVLEGDIKDFDFK 131

Query: 63  DIPDH-DVLLAGFPCQPFSQAG 83
           ++ +  DV+  GFPCQ FS AG
Sbjct: 132 ELENQIDVVTGGFPCQAFSYAG 153


>gi|134097718|ref|YP_001103379.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006322|ref|ZP_06564295.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133910341|emb|CAM00454.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 248

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          L +  LF GIGG+ L LE+      +      E++P+  +    ++P      D+     
Sbjct: 4  LTVLSLFAGIGGLELGLERA----GMRVVGQVELDPWCRQVLAHHWPEVPRHDDVRTAVD 59

Query: 60 --KTQDIPDHDVLLAGFPCQPFSQAG 83
             +Q  PD +++  GFPCQPFS  G
Sbjct: 60 WWHSQPRPDVELVAGGFPCQPFSTYG 85


>gi|282851890|ref|ZP_06261250.1| modification methylase Rho11sI family protein [Lactobacillus
          gasseri 224-1]
 gi|282556899|gb|EFB62501.1| modification methylase Rho11sI family protein [Lactobacillus
          gasseri 224-1]
          Length = 343

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          +   D F GIGG R  LE+   H+   C    E + ++ K+YQA +     F   DI ++
Sbjct: 1  MNFIDFFAGIGGFRSGLEKA-GHK---CVGFVEFDKFARKSYQAMYDTKGEFTGYDIRQV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + +D+P  D+   G PCQ  S AG
Sbjct: 57 RGKDLPKADIWTFGSPCQDVSIAG 80


>gi|256958119|ref|ZP_05562290.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
 gi|256948615|gb|EEU65247.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
          Length = 298

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|213692102|ref|YP_002322688.1| C-5 cytosine-specific DNA methylase [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|213523563|gb|ACJ52310.1| C-5 cytosine-specific DNA methylase [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|320458217|dbj|BAJ68838.1| hypothetical phage protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 880

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP--YSVKTYQANFPNTLIFGDIAKIKT 61
          I  LF G GG+ L ++       +   ++S+I P   ++++Y A+  +    GDI  I  
Sbjct: 11 IGSLFSGYGGLDLGVDMALGG-GMRVAYTSDIEPGPCAIESYHAHGDDCPNLGDITGIDF 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +PD DV++ G PCQ  S AG
Sbjct: 70 EKLPDTDVVVGGSPCQSLSLAG 91


>gi|108562885|ref|YP_627201.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836658|gb|ABF84527.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 160

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKEAQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|79835495|gb|ABB52098.1| Mod [Arthrospira platensis]
          Length = 412

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 18/88 (20%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDI 56
           DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF        PN    GD+
Sbjct: 18 VDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPN---LGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|54022198|ref|YP_116440.1| putative DNA cytosine methyltransferase [Nocardia farcinica IFM
          10152]
 gi|54013706|dbj|BAD55076.1| putative DNA cytosine methyltransferase [Nocardia farcinica IFM
          10152]
          Length = 382

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++  LF GIGG+ L L          C    EI+P +     A FP+T +  DI  ++  
Sbjct: 5  RMVGLFAGIGGLELGLAA----HGWTCELLCEIDPGAQAVLGARFPDTDLHADITALRA- 59

Query: 63 DIP-DHDVLLAGFPCQPFSQAG 83
           +P   +++ AGFPCQ  SQAG
Sbjct: 60 -VPAGTELVAAGFPCQDLSQAG 80


>gi|238855331|ref|ZP_04645644.1| methyl transferase [Lactobacillus jensenii 269-3]
 gi|282933726|ref|ZP_06339082.1| Phi-3T prophage-derived modification methylase Phi3TI
          [Lactobacillus jensenii 208-1]
 gi|313472896|ref|ZP_07813384.1| type II DNA modification methyltransferase [Lactobacillus
          jensenii 1153]
 gi|238832031|gb|EEQ24355.1| methyl transferase [Lactobacillus jensenii 269-3]
 gi|239528918|gb|EEQ67919.1| type II DNA modification methyltransferase [Lactobacillus
          jensenii 1153]
 gi|281302166|gb|EFA94412.1| Phi-3T prophage-derived modification methylase Phi3TI
          [Lactobacillus jensenii 208-1]
          Length = 343

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          +   D F GIGG R  LE+   H+   C    E + ++ K+YQA +     F   DI ++
Sbjct: 1  MNFIDFFAGIGGFRSGLEKA-GHK---CVGFVEFDKFARKSYQAMYDTKGEFTGYDIRQV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + +D+P  D+   G PCQ  S AG
Sbjct: 57 RGKDLPTADIWTFGSPCQDVSIAG 80


>gi|315650298|ref|ZP_07903370.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487409|gb|EFU77719.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 644

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG  L   Q      V   ++SEI P+ +      FP  L  GDI K+  
Sbjct: 16 MKLGALFSGSGGFEL-AGQLVGFTPV---WASEIEPFPILVTTKRFPRMLHLGDIKKLDG 71

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  D++  G PCQ  S AG
Sbjct: 72 AKMPKVDIITGGSPCQDMSIAG 93


>gi|89892790|ref|YP_516277.1| hypothetical protein DSY0044 [Desulfitobacterium hafniense Y51]
 gi|89332238|dbj|BAE81833.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 721

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GIGG  L   +      +   ++SEI  + ++  +  FP  L  GDI K+  
Sbjct: 1  MTMGSLFDGIGGFPLAAVRN----GIAPVWASEIEAFPIEVTKIRFPEMLHVGDITKLNG 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  DV+  G PCQ  S AG
Sbjct: 57 AKLPPVDVICGGSPCQDLSVAG 78


>gi|281491829|ref|YP_003353809.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
 gi|281375540|gb|ADA65046.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
          Length = 351

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTF----NH---RNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           +I  LF G GG  +     F    NH    NVE  F+++I   + + ++ NF       
Sbjct: 4  FRIASLFSGGGGTDIGFSGGFDFLGNHYKNNNVEIVFANDIEEKANEFFEENFKLKPESR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
           I  I + ++PD D+L  GFPCQ FS
Sbjct: 64 SIRDIDSSELPDFDILTGGFPCQSFS 89


>gi|167746072|ref|ZP_02418199.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
 gi|167654587|gb|EDR98716.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
          Length = 476

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKI 59
           + DLFCG GG+ L     F         +++I P  V TY  N P+T    +I GDI  +
Sbjct: 108 MIDLFCGAGGLSLG----FTQNGFITSLANDIEPCCVDTYAHNHPDTPRENIILGDINNV 163

Query: 60  -----KTQDIPDHDVLLAGFPCQPFSQA 82
                + Q     DV++ G PCQ FS A
Sbjct: 164 IENITELQRFSSVDVVVGGPPCQGFSMA 191


>gi|153814253|ref|ZP_01966921.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC
          27756]
 gi|145848649|gb|EDK25567.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC
          27756]
          Length = 422

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIKTQD 63
          DL  GIGG RL LE T  H+   C    E + ++  +Y+A +     +   D+ K+K  D
Sbjct: 8  DLCSGIGGFRLGLE-TAGHK---CIGYCEYDKFARASYEAMYDTEGEWKAHDVTKLKPGD 63

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+   GFPCQ  S AG
Sbjct: 64 VPYADIWCFGFPCQDISVAG 83


>gi|1709155|sp|P50196|MTE8_ECOLX RecName: Full=Modification methylase Eco47II; Short=M.Eco47II;
           AltName: Full=Cytosine-specific methyltransferase
           Eco47II
 gi|558571|emb|CAA57629.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Escherichia coli]
 gi|1098127|prf||2115269B methyltransferase Eco47IIM
          Length = 417

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ L LE+      ++    +EI+ ++ KT + N P   ++ GD++++   
Sbjct: 83  VLELFAGAGGMALGLEKA----GLKSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQVDFT 138

Query: 63  DIPDH-DVLLAGFPCQPFSQAG 83
              +  DVL  GFPCQ FS AG
Sbjct: 139 PYRNTVDVLAGGFPCQAFSYAG 160


>gi|327311917|ref|YP_004338814.1| DNA-cytosine methyltransferase [Thermoproteus uzoniensis 768-20]
 gi|326948396|gb|AEA13502.1| DNA-cytosine methyltransferase [Thermoproteus uzoniensis 768-20]
          Length = 312

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M  + DLF G GG      + F           EI+  + +TY  NFP  ++   D+A I
Sbjct: 1  MYNVVDLFAGGGG----FSRGFADAGFRVVLGVEIDANAARTYSYNFPRAVVLEEDVASI 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFS 80
            +++  H    DV++ G PC+PF+
Sbjct: 57 SYREVERHVGKVDVVIGGSPCEPFT 81


>gi|228471867|ref|ZP_04056638.1| cytosine-specific methyltransferase NlaX [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276797|gb|EEK15500.1| cytosine-specific methyltransferase NlaX [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 186

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 2   LKITDLFCGIGGIRL---DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIF 53
           L+I + F G GG       L++ +     E    SEI+ ++   +  N           +
Sbjct: 11  LRIFEGFAGYGGASFALRKLKEKYPQFKYEVVGYSEIDKFASSLFDVNHKGKQGNPIKNW 70

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI  I   ++PD D+   GFPCQPFS AG
Sbjct: 71  GDITLIDPYELPDFDMFTGGFPCQPFSSAG 100


>gi|288801979|ref|ZP_06407420.1| modification methylase HaeIII (Cytosine-specific
          methyltransferase HaeIII) [Prevotella melaninogenica
          D18]
 gi|288335414|gb|EFC73848.1| modification methylase HaeIII (Cytosine-specific
          methyltransferase HaeIII) [Prevotella melaninogenica
          D18]
          Length = 336

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG    L++ F++       ++E +     T++ANFP+T LI GDI  I 
Sbjct: 1  MRLISLFSGAGG----LDKGFHNAGFRTIVANEFDKKICPTFRANFPDTKLIEGDIHDIP 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
          +   P + V ++ G PCQ +S+AG
Sbjct: 57 SDAFPMNPVGIIGGPPCQSWSEAG 80


>gi|238751088|ref|ZP_04612584.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
 gi|238710778|gb|EEQ03000.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
          Length = 362

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +++  LF G GG+   +E        +  F+++I   + KT    FP++ I  GDI+ I 
Sbjct: 12 IRVLSLFSGGGGMDFGIESAGG----KVVFANDIVENACKTLDKYFPDSDIRLGDISNI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  P  DV++ G+PCQ FS AG
Sbjct: 67 -QSFPCVDVVVGGYPCQSFSMAG 88


>gi|213586034|ref|ZP_03367860.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 112

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 24/92 (26%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG---- 54
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F     
Sbjct: 25  FRFIDLFAGIGGIRRGFEAI----GGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 80

Query: 55  -------------DIAKIKTQDIPDHDVLLAG 73
                        + A+   Q IP HDVLLAG
Sbjct: 81  DITLSHREGVSDDEAAEHIRQHIPQHDVLLAG 112


>gi|225017397|ref|ZP_03706589.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
          DSM 5476]
 gi|224949807|gb|EEG31016.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
          DSM 5476]
          Length = 485

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
          D F GIGG R    + F    + C    EI+ Y+ ++Y+A      +     DI K+   
Sbjct: 8  DFFAGIGGFR----KGFELCGMRCVGHCEIDKYADRSYRAIHDVKEDEWYAADITKVAPA 63

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D+P  D+   GFPCQ  S AG
Sbjct: 64 DLPRADLWAGGFPCQDISVAG 84


>gi|307153788|ref|YP_003889172.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984016|gb|ADN15897.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 424

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   S EI+P    T++ NFP +T+I   + +I  ++I
Sbjct: 13 DLFAGAGGMSLGFEQA----GFDVLASVEIDPIHCATHEYNFPFSTMICRSVTEITAREI 68

Query: 65 --------PDHDVLLAGFPCQPFSQAG 83
                   D DV+  G PCQ FS  G
Sbjct: 69 RNLSPIGTQDIDVVFGGPPCQGFSLIG 95


>gi|194337838|ref|YP_002019632.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194310315|gb|ACF45015.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 409

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          +K  ++F G GG+   LE + F H         E N ++ ++   NF P  + FGDI   
Sbjct: 1  MKTLEIFSGAGGLAKGLELSGFEHTAF-----VEFNKHACESLSENFDPARVFFGDIKDF 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              + D D++  G PCQPFS  G
Sbjct: 56 DLDSLEDIDIVAGGPPCQPFSLGG 79


>gi|50365124|ref|YP_053549.1| modification methylase Sau3AI (GATC cytosine-specific
          methyltransferase) [Mesoplasma florum L1]
 gi|50363680|gb|AAT75665.1| modification methylase Sau3AI (GATC cytosine-specific
          methyltransferase) [Mesoplasma florum L1]
          Length = 404

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFGDI 56
          +K+ +LF G+GG  L L+++    N E  FS++  P     ++      NF   ++  + 
Sbjct: 5  IKVVELFAGVGGFSLALKKS--KGNYEVIFSNQWEPSTKNQFAFNALNKNFKKHILSNED 62

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQA 82
           +   + +P D D+L+ GFPCQ +S A
Sbjct: 63 IQFAKEKLPNDFDLLVGGFPCQDYSVA 89


>gi|255520393|ref|ZP_05387630.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes FSL
          J1-175]
          Length = 451

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG RL +E   +     C    EI+ Y+ K+YQA  +        DI K+
Sbjct: 1  MNFLDLFAGIGGFRLGMEAAGH----TCVGYVEIDKYARKSYQAIHDTEGEWTAHDITKV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             +  +     DV+  GFPCQ FS AG
Sbjct: 57 TDDEWRELRGTVDVICGGFPCQSFSIAG 84


>gi|217964683|ref|YP_002350361.1| cytosine-specific methyltransferase [Listeria monocytogenes
          HCC23]
 gi|217333953|gb|ACK39747.1| cytosine-specific methyltransferase [Listeria monocytogenes
          HCC23]
          Length = 340

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E+  +    EC    EI+    K+YQA  +        DI K+
Sbjct: 1  MKFLDLFAGIGGFRLGMERAGH----ECVGYVEIDKSPRKSYQAIHDTEGEWTREDITKV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 TDEEWRTLRGTVDIICGGFPCQSFSIAG 84


>gi|268589649|ref|ZP_06123870.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
 gi|291314961|gb|EFE55414.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
          Length = 424

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK-T 61
           + +LF G GG+ L LE+      +     +EI+ ++  T + N P+  ++ GD+A I  +
Sbjct: 77  VLELFAGAGGMALGLEKA----GLSAVMLNEIDKHACNTLRLNRPDWNVVEGDVAGIDFS 132

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           Q     DVL  GFPCQ FS AG
Sbjct: 133 QYKGKVDVLAGGFPCQAFSYAG 154


>gi|295104578|emb|CBL02122.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 293

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 11 IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDV 69
          IGG    L + ++    +  +++EINP + KTY+ NF N ++ GDI++ K   IP   D+
Sbjct: 6  IGGFDF-LGKHYSKTGFKIIWANEINPAACKTYRDNFGNYIVEGDISE-KINTIPASADI 63

Query: 70 LLAGFPCQPFSQAG 83
          ++ GFPCQ  S  G
Sbjct: 64 VVGGFPCQDISING 77


>gi|260909972|ref|ZP_05916659.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
          F0295]
 gi|260635922|gb|EEX53925.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
          F0295]
          Length = 370

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 18/92 (19%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFG------- 54
          DLF GIGG    +         +C F+SE +  +  +Y+AN+    P+    G       
Sbjct: 10 DLFAGIGGFHTAMRSVGG----KCVFASEWDKNARLSYEANYIESEPHLFKKGGNGQYLY 65

Query: 55 ---DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             DI      ++P+ D+   GFPCQPFS AG
Sbjct: 66 FNEDINHAIPSEMPNFDICCGGFPCQPFSVAG 97


>gi|298286911|sp|P13906|MTB1_BACSH RecName: Full=Modification methylase BspRI; Short=M.BspRI; AltName:
           Full=Cytosine-specific methyltransferase BspRI
 gi|258593908|emb|CAA33764.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 424

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------QTFNHRNV----------ECFFSSEINP 37
             +  LFCG GG+ L  E              + F  R+V             ++++I  
Sbjct: 58  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 117

Query: 38  YSVKTYQANFPNTLIF--GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN +     DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 118 EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 163


>gi|632681|gb|AAB31678.1| DNA (cytosine-5)-methyltransferase, m5C-MTase {BspRI
           restriction-modification system} [Escherichia coli,
           Peptide, 424 aa]
          Length = 424

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------QTFNHRNV----------ECFFSSEINP 37
             +  LFCG GG+ L  E              + F  R+V             ++++I  
Sbjct: 58  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 117

Query: 38  YSVKTYQANFPNTLIF--GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN +     DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 118 EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 163


>gi|307699864|ref|ZP_07636915.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614902|gb|EFN94120.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 439

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLE----------QTFNHRNVECFFSSEINP-------YSVKTYQ 44
           +++ +LF G+GG RL LE             +  N    ++++  P       ++ + YQ
Sbjct: 9   IRVAELFAGVGGFRLGLEGWAGDATAPGTLPSAGNFTTIWANQWEPPGTLPRQFAARCYQ 68

Query: 45  ANF-PNTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
           ++F  N++I  DIA++         +IPD D+++ GFPCQ +S A
Sbjct: 69  SHFGENSVINRDIARVMDDAEAGQIEIPDVDLVVGGFPCQDYSVA 113


>gi|126433434|ref|YP_001069125.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
 gi|126233234|gb|ABN96634.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
          Length = 349

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          F  +  +  FS E+N ++  TY ANF    IF GDI +    ++P  DV++ G PCQ FS
Sbjct: 5  FKPQGFDPVFSVELNLHAAATYAANFGEDHIFWGDIDEALKGEVPHADVVIGGPPCQGFS 64

Query: 81 QAG 83
            G
Sbjct: 65 NLG 67


>gi|300933957|ref|ZP_07149213.1| DNA-cytosine methyltransferase [Corynebacterium resistens DSM
          45100]
          Length = 363

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--- 59
          K+   F G GG+ L L+        +  ++++ +  +V TY+ N    ++ GDI +I   
Sbjct: 6  KVVSTFAGCGGLDLGLQDV----GFDIVWANDFSKEAVATYRHNINAHIVDGDITEIDPF 61

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + IPD D++  GFPCQ FS
Sbjct: 62 TDETIPDADLVTGGFPCQDFS 82


>gi|315174236|gb|EFU18253.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX1346]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MTFLDLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               + +   DVL  GFPCQ FS AG
Sbjct: 57 SDEFVRSLGPVDVLCGGFPCQAFSIAG 83


>gi|217033040|ref|ZP_03438509.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298736593|ref|YP_003729119.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945239|gb|EEC23921.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298355783|emb|CBI66655.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 351

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+     +   H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSK---HPYFELIWANDIDKDAILSYQANHKEAQTILCDIVQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    ++LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSINILLGGPPCQSYSTLG 83


>gi|284050655|ref|ZP_06380865.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835464|gb|ABB52092.1| Mod [Arthrospira platensis]
          Length = 406

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L     F+    E  ++ + N  + +T++ N   T+   +I +I   
Sbjct: 17 KLVSLFSGCGGMDL----PFHRAGFEVVWAIDCNGAACRTFRRNISETIACNNIQEIDIT 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  D++  GFPCQ FS  G
Sbjct: 73 KVPKADLITGGFPCQDFSMIG 93


>gi|291568714|dbj|BAI90986.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 406

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L     F+    E  ++ + N  + +T++ N   T+   +I +I   
Sbjct: 17 KLVSLFSGCGGMDL----PFHRAGFEVVWAIDCNGAACRTFRRNISETIACNNIQEIDIT 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  D++  GFPCQ FS  G
Sbjct: 73 KVPKADLITGGFPCQDFSMIG 93


>gi|258593909|emb|CAA33765.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 396

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------QTFNHRNV----------ECFFSSEINP 37
             +  LFCG GG+ L  E              + F  R+V             ++++I  
Sbjct: 30  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 89

Query: 38  YSVKTYQANFPNTLIF--GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN +     DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 90  EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 135


>gi|237711274|ref|ZP_04541755.1| site-specific DNA-methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455118|gb|EEO60839.1| site-specific DNA-methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 296

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + +LF GIGG  + L+      + E  F SEI  +++  ++ NFP     G +  I    
Sbjct: 3  LLELFSGIGGFSMGLQAA--GYSFEKVFFSEIEKHAIANFKYNFPYAEHIGSVTDIAKVG 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   D++  G PCQ FS  G
Sbjct: 61 IARPDIITFGSPCQNFSAVG 80


>gi|315657354|ref|ZP_07910236.1| modification methylase NgoPII [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315491826|gb|EFU81435.1| modification methylase NgoPII [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 355

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + +  LF G GG+ L  EQ  FN        ++E +P   +T++AN P+T LI GDI  +
Sbjct: 1  MNVISLFSGCGGLDLGFEQAGFN-----IPVANEFDPTIYETFKANHPHTHLIEGDIRGV 55

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +DI      + D ++ G PCQ +S+AG
Sbjct: 56 TIEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|282901524|ref|ZP_06309446.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
 gi|281193567|gb|EFA68542.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
          Length = 436

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ-- 62
          DLF G GG+ L +E        E   S EI+P     +  NFPN   I  DI+ + ++  
Sbjct: 16 DLFSGAGGLSLGIESA----GFEVVISIEIDPVHSAIHNYNFPNCANICRDISNVSSEEL 71

Query: 63 -------DIPDHDVLLAGFPCQPFSQAG 83
                 DI + D+L  G PCQ FSQ G
Sbjct: 72 WNILNDKDINEVDLLAGGPPCQGFSQMG 99


>gi|296814510|ref|XP_002847592.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
 gi|238840617|gb|EEQ30279.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
          Length = 586

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ + +P ++ +Y+ANFP++L    D+A   T  I
Sbjct: 298 DGFCGAGGVSRGAQQA----GLKLTWAFDHSPSAMNSYRANFPSSLAETSDVADFLTNSI 353

Query: 65  PD--HDVLLAGFPCQPFSQA 82
            D   DVL A  PCQPFS A
Sbjct: 354 WDIIVDVLHASPPCQPFSPA 373


>gi|315611977|ref|ZP_07886895.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
 gi|315315966|gb|EFU64000.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
          Length = 359

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A  +    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRRIGRVDIICGGFPCQAFSIAG 83


>gi|298346143|ref|YP_003718830.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          43063]
 gi|298236204|gb|ADI67336.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          43063]
          Length = 355

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + +  LF G GG+ L  EQ  FN        ++E +P   +T++AN P+T LI GDI  +
Sbjct: 1  MNVISLFSGCGGLDLGFEQAGFN-----IPVANEFDPTIYETFKANHPHTHLIEGDIRGV 55

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +DI      + D ++ G PCQ +S+AG
Sbjct: 56 TIEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|242024278|ref|XP_002432555.1| Modification methylase HaeIII, putative [Pediculus humanus
          corporis]
 gi|212518015|gb|EEB19817.1| Modification methylase HaeIII, putative [Pediculus humanus
          corporis]
          Length = 267

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          + + +L+ GIGG+   L+++  +++ V+     +IN  + + Y+ NFP TL+ G +I  +
Sbjct: 1  MNVIELYSGIGGMHFALKESGIDYKVVKAV---DINTTANEVYKLNFPKTLLLGKNIQSL 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + +D    D++L   PCQP ++ G
Sbjct: 58 QLEDFNGIDMILMSPPCQPHTRNG 81


>gi|304390097|ref|ZP_07372051.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326579|gb|EFL93823.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 355

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + +  LF G GG+ L  EQ  FN        ++E +P   +T++AN P+T LI GDI  +
Sbjct: 1  MNVISLFSGCGGLDLGFEQAGFN-----IPVANEFDPTIYETFKANHPHTHLIEGDIRGV 55

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +DI      + D ++ G PCQ +S+AG
Sbjct: 56 TIEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|238923038|ref|YP_002936551.1| DcmB [Eubacterium rectale ATCC 33656]
 gi|238874710|gb|ACR74417.1| DcmB [Eubacterium rectale ATCC 33656]
          Length = 672

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + I  LF G GG+ L  E   FN        ++E +     T++AN PNT LI GDI ++
Sbjct: 1  MNIISLFSGCGGLDLGFESAGFN-----IPVANEFDKTIWATFKANHPNTHLIEGDIRQV 55

Query: 60 KTQDIPDH-----DVLLAGFPCQPFSQAG 83
            +DI  +     D ++ G PCQ +S+AG
Sbjct: 56 TKEDIEQYIDGEIDGIIGGPPCQSWSEAG 84


>gi|127487|sp|P09795|MTS1_SALIN RecName: Full=Modification methylase SinI; Short=M.SinI; AltName:
           Full=Cytosine-specific methyltransferase SinI
 gi|79032|pir||A32008 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella sp
 gi|154350|gb|AAA27212.1| modification methylase (M.SinI) [Salmonella enterica subsp.
           enterica serovar Infantis]
          Length = 461

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K    F G  G+ L +EQ       E   +SEI+  +  T  +N PN  + GDI    T+
Sbjct: 76  KALSFFSGAMGLDLGIEQA----GFETLLASEIDKAARDTILSNRPNMALIGDIRDYTTE 131

Query: 63  DI---------PDHDVLLAGFPCQPFSQAG 83
           DI          + D+++ G PCQ FS AG
Sbjct: 132 DILKLAGVSSGNEIDLIMGGPPCQAFSTAG 161


>gi|240145320|ref|ZP_04743921.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis
          L1-82]
 gi|257202585|gb|EEV00870.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis
          L1-82]
          Length = 504

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKRN----GIRPVWASEIEKFPMAVTMHRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|153868905|ref|ZP_01998633.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152074513|gb|EDN71359.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 418

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
           + DLF G GG+   LE    H      F++EI P    TY+ N PNT L+ GD+ ++   
Sbjct: 33  LVDLFAGAGGLSCGLEMAGFH----PLFANEIEPVYANTYKHNHPNTDLVIGDVRQMCAS 88

Query: 63  DIPDH--------DVLLAGFPCQPFS 80
            + +         D+L  G PCQ FS
Sbjct: 89  TLRERLGVKQGEIDLLAGGPPCQGFS 114


>gi|110834520|ref|YP_693379.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
          borkumensis SK2]
 gi|110647631|emb|CAL17107.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
          borkumensis SK2]
          Length = 308

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF G GG    L Q       +   +++I PY+   Y ANFP T  +  I   + Q  P 
Sbjct: 3  LFTGCGGSDSGLHQA----GYDVLMANDILPYAKDFYLANFPET-DYQVIDVREIQSFPS 57

Query: 67 HDVLLAGFPCQPFSQAG 83
           DVL+  +PCQ FSQ G
Sbjct: 58 ADVLVGCYPCQGFSQGG 74


>gi|323143137|ref|ZP_08077837.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
          12066]
 gi|322417087|gb|EFY07721.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
          12066]
          Length = 541

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG+ L   QT  +     F   E +P    TY+ N PN  + GD+      D
Sbjct: 5  VVDLFAGAGGLSLGFVQTGKYEMKVAF---ERDPNMQATYRLNHPNVELQGDVCGADYAD 61

Query: 64 IPDH----DVLLAGFPCQPFSQA 82
          I       DV++ G PCQ FS A
Sbjct: 62 IQKRYGAIDVVIGGPPCQGFSNA 84


>gi|312385012|gb|EFR29606.1| hypothetical protein AND_01274 [Anopheles darlingi]
          Length = 348

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L++ +LF GIGG+R+ LE+T   R  E   + ++NP +   Y  NF       G+I  + 
Sbjct: 13 LRVLELFSGIGGMRMALERT--GRAFEIVSAIDVNPIANSVYTHNFGEKAARNGNILSLT 70

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
           + I     D +L   PCQPF++ G
Sbjct: 71 AKTISKLAIDTVLMSPPCQPFTRNG 95


>gi|291537886|emb|CBL10997.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 473

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKRN----GIRPVWASEIEKFPMAVTMYRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|225375653|ref|ZP_03752874.1| hypothetical protein ROSEINA2194_01278 [Roseburia inulinivorans
          DSM 16841]
 gi|225212510|gb|EEG94864.1| hypothetical protein ROSEINA2194_01278 [Roseburia inulinivorans
          DSM 16841]
          Length = 473

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKRN----GIRPVWASEIEKFPMAVTMYRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|200388503|ref|ZP_03215115.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|199605601|gb|EDZ04146.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 361

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +++  LF G GG+   +         +  F++++   + KT    FP+T I   DI++I 
Sbjct: 12 IRVLSLFSGCGGMDFGITSAGG----DIVFANDVVENACKTLGNYFPDTDIRHSDISQI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  PD D+++ G+PCQ FS AG
Sbjct: 67 -QSFPDVDIVVGGYPCQSFSMAG 88


>gi|206972356|ref|ZP_03233302.1| modification methylase [Bacillus cereus AH1134]
 gi|206732681|gb|EDZ49857.1| modification methylase [Bacillus cereus AH1134]
          Length = 309

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCG-IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +K+  LF G I G+ L  +     +  E   S+E+   +VKT + N+ +T+I  DI  + 
Sbjct: 4  IKVGSLFSGAIDGMSLGFQMC--SKQYEVIISNELEATAVKTAKLNYNHTIIQQDIRNVS 61

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +   + DV+L  FPCQ +S+A 
Sbjct: 62 VEAFRECDVILGTFPCQEYSKAA 84


>gi|300867442|ref|ZP_07112096.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
 gi|300334557|emb|CBN57264.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
          Length = 350

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 4  ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          I  LF G GG+ L   Q  FN       ++SE +    +TY+ N P+T +   DI  I +
Sbjct: 9  IVALFSGCGGLDLGFSQAGFN-----VIWASEYDKDIWETYENNHPDTFLDKRDIRAISS 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPD   ++ G PCQ +S+AG
Sbjct: 64 AEIPDCTGIIGGSPCQSWSEAG 85


>gi|323650438|gb|ADX97294.1| M.Cac8I [Clostridium acetobutylicum]
          Length = 398

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDI 56
           ++++   F G GG+ L     F     E  +S++ +  +V+TY  N    + +  + GDI
Sbjct: 25  LMRVISFFSGAGGMDLG----FTLAGHEIVWSNDFDKDAVQTYNENIGKYWKHESVLGDI 80

Query: 57  AKIKTQD-------IPDHDVLLAGFPCQPFSQA 82
            K+ ++        IPD DV++ GFPCQ FS A
Sbjct: 81  TKLLSKPFEEIDKIIPDGDVVIGGFPCQGFSIA 113


>gi|315654722|ref|ZP_07907628.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
 gi|315491186|gb|EFU80805.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
          Length = 360

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + +  LF G GG+ L  EQ  FN        ++E +P   +T++AN P+T LI GDI  +
Sbjct: 6  MNVISLFSGCGGLDLGFEQAGFN-----IPVANEFDPTIYETFKANHPHTHLIEGDIRGV 60

Query: 60 KTQDIP---DHDV--LLAGFPCQPFSQAG 83
            +DI    D +V  ++ G PCQ +S+AG
Sbjct: 61 TIEDIAPFIDGEVAGIIGGPPCQSWSEAG 89


>gi|254450593|ref|ZP_05064030.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
 gi|198264999|gb|EDY89269.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
          Length = 365

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K   LF G GG+   ++        +  F++++  Y+ +T++  F +T  I GDI +I 
Sbjct: 1  MKTISLFSGCGGMDFGIKAA----GCDVVFANDVMKYAAETHRKYFKDTDFIHGDIREI- 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            + P  D+++ G+PCQ FS  G
Sbjct: 56 -SNFPSTDLVVGGYPCQSFSMGG 77


>gi|124009862|ref|ZP_01694529.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123984098|gb|EAY24464.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 353

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L  E+     NV   F+ E NP+     +  +P++  + DI +I  
Sbjct: 1  MRHASLFSGLGGFDLAAER-MGWVNV---FTVENNPFCQTILRHYWPDSTHYEDIRQIDF 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
                 D+L  GFPCQPFSQAG
Sbjct: 57 SPYYGQIDLLTGGFPCQPFSQAG 79


>gi|170698721|ref|ZP_02889786.1| DNA-cytosine methyltransferase [Burkholderia ambifaria IOP40-10]
 gi|170136346|gb|EDT04609.1| DNA-cytosine methyltransferase [Burkholderia ambifaria IOP40-10]
          Length = 353

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+   F G GG+ L     F++R         E   + EI+     TY+ N        
Sbjct: 32  FKVVSFFAGCGGLDLGFTGGFSYRGERFAKLPFEIERAYEIDARCKATYEQNIGPHFETC 91

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           D++    + +P+ DVL+ GFPCQ FS  G
Sbjct: 92  DLSTADIESMPNADVLIGGFPCQEFSICG 120


>gi|111021129|ref|YP_704101.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus jostii RHA1]
 gi|110820659|gb|ABG95943.1| probable DNA (cytosine-5-)-methyltransferase [Rhodococcus jostii
          RHA1]
          Length = 392

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +   +  + C    EI+P +    +  F +  +  D+ K+++  +P 
Sbjct: 15 LFAGIGGLELGLREHGWNTELLC----EIDPGAQAVLRTQFTDVPVHSDVTKLRS--LPR 68

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 69 DIELVAAGFPCQDLSQAG 86


>gi|330723541|gb|AEC45911.1| cytosine specific DNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 416

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 21/96 (21%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG+  DL         E   S EI P +V+TY  NF N     ++  I+T+
Sbjct: 93  KFIDLFSGAGGLSCDLVMA----GFEPIASVEIMPDAVETYVYNFQNRKKKEEL--IETR 146

Query: 63  DI---------------PDHDVLLAGFPCQPFSQAG 83
           DI                D D+++ GFPCQ FS AG
Sbjct: 147 DIRDVKVKEELYNKFKDTDIDLIVGGFPCQGFSMAG 182


>gi|228911341|ref|ZP_04075144.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
 gi|228848278|gb|EEM93129.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
          Length = 236

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   D F G+GG RL +EQ   HR   C    E + ++  +Y+A  N        DI  I
Sbjct: 3  LTFLDFFSGVGGFRLGMEQA-KHR---CIGYVEWDKFARASYEAIHNTEGEWTNHDINNI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          K+  IP  DV   GFPC   S A
Sbjct: 59 KSGTIPKADVWCFGFPCTDISIA 81


>gi|261368869|ref|ZP_05981752.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile
          DSM 15176]
 gi|282568964|gb|EFB74499.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile
          DSM 15176]
          Length = 565

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLF G GG+ L   QT  + +++  F  E +PY  +TY+ N     + GD+      
Sbjct: 6  KVVDLFSGAGGLSLGFLQTKKY-DIKVAF--ENSPYMQETYKKNHTGVEVQGDVCAADYA 62

Query: 63 DIPDH----DVLLAGFPCQPFSQA 82
          DI       DV++ G PCQ FS A
Sbjct: 63 DIVRRYGKIDVVIGGPPCQGFSNA 86


>gi|269986305|gb|EEZ92611.1| DNA-cytosine methyltransferase [Candidatus Parvarchaeum
          acidiphilum ARMAN-4]
          Length = 349

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L     F +      F+++ +    +TY+ NF + L    I  IK++D
Sbjct: 5  LISLFSGCGGLDLG----FRNAGFGIVFANDNDKAVWETYEKNFGHKLDGRSIIDIKSED 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D ++ G PCQ +S AG
Sbjct: 61 LPDADGIIGGPPCQSWSLAG 80


>gi|312137784|ref|YP_004005120.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi 103S]
 gi|311887123|emb|CBH46432.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi 103S]
          Length = 387

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG+ L L        + C    EI+P + +  +  F +  + GD+ ++++  +P 
Sbjct: 10 LFAGIGGVELGLRSHGWETELLC----EIDPGAQQVLRTRFADVELHGDVTRLRS--LPQ 63

Query: 67 H-DVLLAGFPCQPFSQAG 83
            +++ AGFPCQ  SQAG
Sbjct: 64 RTELVAAGFPCQDLSQAG 81


>gi|218902126|ref|YP_002449960.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
 gi|218538919|gb|ACK91317.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
          Length = 350

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+  +F GIGG  L  +Q       E  +++E++  +  TY+  +    L   D+ ++  
Sbjct: 6  KLGSMFAGIGGTCLGFQQA----GAEIVWANEVDRNASITYRHFWKGEYLQEADVTEVDK 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP  D+L+ GFPCQ FS AG
Sbjct: 62 TTIPQLDILIGGFPCQAFSIAG 83


>gi|158291464|ref|XP_312975.4| AGAP004101-PA [Anopheles gambiae str. PEST]
 gi|157017559|gb|EAA08679.4| AGAP004101-PA [Anopheles gambiae str. PEST]
          Length = 345

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ +LF GIGG+R+ LE+    +  E   + ++NP + + Y+ NF   T+  G+I  +  
Sbjct: 16 RVLELFSGIGGMRMALEEA--GKEFEIVSAIDVNPIANEVYKHNFGAETVRNGNILSLTA 73

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
          + +     D +L   PCQPF++ G
Sbjct: 74 EKVTKLKVDTILMSPPCQPFTRNG 97


>gi|326574028|gb|EGE23977.1| DcmB [Moraxella catarrhalis CO72]
          Length = 337

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L     F     +   ++E +     T++AN  NT LI GDI  I 
Sbjct: 1  MKIISLFSGCGGLDL----GFKKAGFKIAVANEYDKSIWATFKANHHNTKLIEGDIRHIL 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P D D ++ G PCQ +S+AG
Sbjct: 57 EEDFPNDIDGIIGGPPCQSWSEAG 80


>gi|967022|emb|CAA62381.1| DNA (cytosine-5-)-methyltransferase [Geobacillus
          stearothermophilus]
 gi|1262297|gb|AAA96793.1| m5C-multispecific methyltransferase [Geobacillus
          stearothermophilus]
 gi|1589631|prf||2211376A cytosine-C5-DNA methyltransferase
          Length = 534

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L + +LF G G + + L            ++++ +  +   Y+ N  + ++ GDI  I  
Sbjct: 14 LTVAELFAGGGLMAVGLRAA----GYNLVWANDFDKSACAAYRHNLGDHIVHGDITAIDP 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPD DV+  G PCQ +S AG
Sbjct: 70 ADIPDTDVIAGGPPCQDYSVAG 91


>gi|313667095|gb|ADR72992.1| M2.BspMI [Bacillus sp. M(2010)]
          Length = 353

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ML   DLF G GG+ L L++       +   S EIN  + +T++ NFP   +F GDI  +
Sbjct: 1  MLTAVDLFSGAGGLLLALKEA----GYQTLLSCEINESACETHKYNFPEIPLFQGDIQNL 56

Query: 60 KTQDI------PDHDVLLAGFPCQPFSQAG 83
              I       D D+++ G PCQ +S  G
Sbjct: 57 TEDKIIEYTKGTDVDLVVGGPPCQGYSMFG 86


>gi|291519163|emb|CBK74384.1| DNA-methyltransferase (dcm) [Butyrivibrio fibrisolvens 16/4]
          Length = 406

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSE---INPYSVKTYQANFPNTLIFG------ 54
          I +LF G+GG RL  E+     N   F   E    N ++   Y  +F +           
Sbjct: 5  ICELFAGVGGFRLGFERLNTGWNTTWFSQWEPEKKNQWAHDCYVEHFGDLPDLQGEFHTG 64

Query: 55 -DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+ I   +IPDH++L+ GFPCQ +S A
Sbjct: 65 EDISIINKDNIPDHNLLVGGFPCQDYSVA 93


>gi|310819714|ref|YP_003952072.1| cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
 gi|309392786|gb|ADO70245.1| Cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
          Length = 421

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+  LF G GG    L+  F     E   + E++    +T + N P+ T++  DI K++ 
Sbjct: 5  KVISLFSGAGG----LDYGFEAAGFETAVALEMDHACCETLRENRPSWTVMETDILKVRG 60

Query: 62 QD--------IPDHDVLLAGFPCQPFSQAG 83
          +D        I + DVL+ G PCQPFS+AG
Sbjct: 61 KDVLKAAGLKIGEADVLIGGPPCQPFSKAG 90


>gi|119513855|ref|ZP_01632813.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
          spumigena CCY9414]
 gi|119461493|gb|EAW42572.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
          spumigena CCY9414]
          Length = 318

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 13/88 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          KI DLF G GG    L   F+    E   + +I+  ++ TY+ N+PNT +I  DI ++  
Sbjct: 4  KIIDLFAGAGG----LTTGFDMEGFESLCAIDIDAKALATYKHNYPNTKIIHQDIRQVNP 59

Query: 62 QDI--------PDHDVLLAGFPCQPFSQ 81
           D+         +  VL+ G PCQ FS+
Sbjct: 60 SDLRLALGLRQEELTVLIGGPPCQGFSR 87


>gi|400283|sp|P31974|MTA1_CELCE RecName: Full=Modification methylase AluI; Short=M.AluI; AltName:
          Full=Cytosine-specific methyltransferase AluI
 gi|580712|emb|CAA77866.1| Alu I DNA-(cytosine C5)-methyltransferase [Cellulosimicrobium
          cellulans]
 gi|300124216|gb|ADJ68011.1| M.AluI [Cellulosimicrobium cellulans]
          Length = 521

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 20/89 (22%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLF GIGG    L  T       C ++ EI+  +   Y+ N+ N    GDI    T D  
Sbjct: 12 DLFAGIGGFHAALAATGG----VCEYAVEIDREAAAVYERNW-NKPALGDI----TDDAN 62

Query: 66 DH-----------DVLLAGFPCQPFSQAG 83
          D            DVL  GFPCQPFS++G
Sbjct: 63 DEGVTLRGYDGPIDVLTGGFPCQPFSKSG 91


>gi|308063322|gb|ADO05209.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Sat464]
          Length = 348

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQ N      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQVNHKEVQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|302789792|ref|XP_002976664.1| hypothetical protein SELMODRAFT_105635 [Selaginella
          moellendorffii]
 gi|300155702|gb|EFJ22333.1| hypothetical protein SELMODRAFT_105635 [Selaginella
          moellendorffii]
          Length = 334

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L++ + + GIGG+R  LE+   +   VE F   EIN  +   Y+ NF +    G+I ++ 
Sbjct: 8  LRVLEFYSGIGGLRFSLEEAKIDATVVEAF---EINELANDVYERNFGHRPNQGNIQRLS 64

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
            D+  +  D  L   PCQP+++ G
Sbjct: 65 VSDLDKYEADAWLLSPPCQPYTRQG 89


>gi|166363188|ref|YP_001655461.1| cytosine-specific DNA methylase [Microcystis aeruginosa NIES-843]
 gi|166085561|dbj|BAG00269.1| cytosine-specific DNA methylase [Microcystis aeruginosa NIES-843]
          Length = 387

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 13/86 (15%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GGI   L Q  FN        S+EI+P +  T+Q NFPN   F GDI    TQ+
Sbjct: 63  DLFSGAGGITQGLLQAGFNP-----VASAEISPIASATHQKNFPNCHHFCGDIHDFNTQE 117

Query: 64  I------PDHDVLLAGFPCQPFSQAG 83
                  P   +++ G PCQ FS AG
Sbjct: 118 WLAKIGNPFIHLVVGGPPCQGFSVAG 143


>gi|323514189|gb|ADX89637.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2004_A]
          Length = 332

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G+   R+ LE+      V  +++SEI+  ++K  QAN+P+ +  GD+ K + 
Sbjct: 1  MNVLSLFDGMACCRIALERA--GIQVGNYYASEIDKNAIKVAQANWPDNIQLGDVTKWQE 58

Query: 62 Q--DIPDHDVLLAGFPCQPFSQAG 83
             D     ++  GFPCQ +S AG
Sbjct: 59 WGIDWASIGLVTGGFPCQAWSIAG 82


>gi|308235652|ref|ZP_07666389.1| DcmB [Gardnerella vaginalis ATCC 14018]
 gi|311115197|ref|YP_003986418.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
          14019]
 gi|310946691|gb|ADP39395.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
          14019]
          Length = 333

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++ N P T LI GD+ K+ 
Sbjct: 1  MKVLSLFSGCGGLDLGFEKA----GFEIPVANEFDKTIWDTFKINHPKTHLIEGDVRKVS 56

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQAG 83
            DI ++     D ++ G PCQ +S+AG
Sbjct: 57 KNDISEYLSGNLDGIIGGPPCQSWSEAG 84


>gi|18976421|ref|NP_577778.1| cytosine-specific DNA-methyltransferase [Pyrococcus furiosus DSM
          3638]
 gi|18891953|gb|AAL80173.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Pyrococcus furiosus DSM 3638]
          Length = 301

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M  + DLF G GG  L     F     +   + E      KTY  NFP   ++  DI  +
Sbjct: 1  MPSVIDLFAGAGGFSLG----FKLAGFKIISAVENFKPKAKTYSFNFPEVKVYVSDIKAL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            +D P  DV++ G PC+PF+
Sbjct: 57 NPKDFPKADVIIGGPPCEPFT 77


>gi|14520267|ref|NP_125742.1| modification methylase [Pyrococcus abyssi GE5]
 gi|5457482|emb|CAB48973.1| Citosine-specific modificatrion methylase [Pyrococcus abyssi GE5]
          Length = 309

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+ DLF G GG  L     F     E   + E      KTY  NFP   +I  DI  I 
Sbjct: 8  MKVLDLFAGAGGFSLG----FKLVGFEIVAAIENFKPKAKTYSHNFPGVKVIAQDIKVIS 63

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            +I D DV++ G PC+PF+
Sbjct: 64 PDEIGDVDVIIGGPPCEPFT 83


>gi|254293303|ref|YP_003059326.1| DNA-cytosine methyltransferase [Hirschia baltica ATCC 49814]
 gi|254041834|gb|ACT58629.1| DNA-cytosine methyltransferase [Hirschia baltica ATCC 49814]
          Length = 383

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ + F G G     LE +F+     C F+++ +P   +TY ANF P      D+  +  
Sbjct: 14 RVLEFFAGGGFAIKGLEDSFH-----CVFANDNDPLKSRTYTANFGPTHFDTSDVWTLDA 68

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+ ++  A FPCQ  S AG
Sbjct: 69 NHIPNAELAWASFPCQDISIAG 90


>gi|319956919|ref|YP_004168182.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
          16511]
 gi|319419323|gb|ADV46433.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
          16511]
          Length = 394

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIG   +     F     E  FS EI+ ++ K+Y A +    ++ D+  +  
Sbjct: 1  MKIATLFSGIGAPEMAARHIFPSH--EIVFSCEIDKFARKSYAAIYGEEPLYHDVHNVPA 58

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
               H D+L+ G PCQ FS AG
Sbjct: 59 IFYQGHIDLLVGGSPCQSFSVAG 81


>gi|212632918|ref|YP_002309443.1| site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
 gi|212554402|gb|ACJ26856.1| Site-specific DNA-methyltransferase (cytosine-specific) [Shewanella
           piezotolerans WP3]
          Length = 412

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 27  VECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           +E  F +E++ ++ KT + N P+  ++ GDI+KI    I  D DVL  GFPCQ FS AG
Sbjct: 98  LESIFLNEMDKHACKTLRHNRPDWNVVEGDISKIDFSVIKQDVDVLTGGFPCQAFSYAG 156


>gi|316931670|ref|YP_004106652.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315599384|gb|ADU41919.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 390

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G+GG+ L L +  +    +    SEI   +    +  F      GD+A +K+
Sbjct: 1  MKIAGLFAGVGGLELGLHRAGH----DTLVFSEIWEPAGAVLERRFGGVPNVGDVASLKS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P D D++ AGFPCQ  SQAG
Sbjct: 57 --LPADVDLMTAGFPCQDLSQAG 77


>gi|294155572|ref|YP_003559956.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
 gi|291599876|gb|ADE19372.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
          Length = 415

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 17/97 (17%)

Query: 2  LKITDLFCGIGGIRLDLE---------QTFNHRNVECFFSSEINPYSVKTYQANFPNTLI 52
          L + +LF G+GG R+ L          +   + N    ++++  P S K +      T  
Sbjct: 3  LSVVELFAGVGGFRVGLNHINSFDENGRAIENNNWNFVWANQYEPSSNKQHAFECYITR- 61

Query: 53 FGD-------IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          FGD       I+K+  + IPDH++L+ GFPCQ +S A
Sbjct: 62 FGDKNHSNDDISKVDKKVIPDHNLLVGGFPCQDYSVA 98


>gi|257882475|ref|ZP_05662128.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|294620467|ref|ZP_06699776.1| methyl transferase [Enterococcus faecium E1679]
 gi|294623872|ref|ZP_06702700.1| methyl transferase [Enterococcus faecium U0317]
 gi|257818133|gb|EEV45461.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|291593380|gb|EFF24945.1| methyl transferase [Enterococcus faecium E1679]
 gi|291596826|gb|EFF28049.1| methyl transferase [Enterococcus faecium U0317]
          Length = 380

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIK--- 60
          DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +    
Sbjct: 5  DLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTRKEVEMHDITSVSDEF 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +   D+L  GFPCQ FS AG
Sbjct: 61 VRSLGPVDILCGGFPCQAFSIAG 83


>gi|307277185|ref|ZP_07558289.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX2134]
 gi|306506115|gb|EFM75281.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX2134]
          Length = 429

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY--------SVKTYQANFPNTL-I 52
          L + +LF G+GG R+ LE    H N + F +   N +        + + Y   FPN+  I
Sbjct: 9  LNVLELFAGVGGFRVGLE----HSNADLFKTKWANQWEPSRKSQDAFEVYDYRFPNSENI 64

Query: 53 FGDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
            +I +I  ++    D D+++ GFPCQ +S A
Sbjct: 65 NRNIEEISNEEFEQMDADIIVGGFPCQDYSVA 96


>gi|308814119|ref|XP_003084365.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
 gi|116056249|emb|CAL58430.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
          Length = 625

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF GIGG  + LE+   HR V      E +P   +  +  FP+  +  D+A++  
Sbjct: 4  LRVASLFAGIGGFDVGLERA-GHRVV---LQVEKDPRCRRVLKRRFPDVALVRDVAEVLP 59

Query: 62 QDIPDHDVLLAGFPCQPFS 80
            +   D+L+AGFPC   S
Sbjct: 60 HALDGVDLLVAGFPCNDCS 78


>gi|163755904|ref|ZP_02163021.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
 gi|161324075|gb|EDP95407.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
          Length = 413

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           ++ +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ G+I     
Sbjct: 76  RVLELFAGAGGLAIGLEKA----GIKCVALNEIDKWACQTLRENRPDWNVLEGNIKSFDF 131

Query: 62  QDIPDH-DVLLAGFPCQPFSQAG 83
               D  +++  GFPCQ FS AG
Sbjct: 132 SKYKDKVEIVTGGFPCQAFSYAG 154


>gi|213622824|ref|ZP_03375607.1| DNA cytosine methylase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/22 (86%), Positives = 19/22 (86%)

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          Q IP HDVLLAGFPCQPFS AG
Sbjct: 15 QHIPQHDVLLAGFPCQPFSLAG 36


>gi|116750223|ref|YP_846910.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699287|gb|ABK18475.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 399

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--- 59
           ++ DLF G GG+ L       H   +  ++++ N Y+V+TY +NF    + GDI  +   
Sbjct: 21  RLIDLFSGAGGMTLGFTSRMGHF-FQPVWANDFNMYAVQTYNSNFGTHCVPGDIVDLLRD 79

Query: 60  KTQDIPDHDVLLAGFPCQPFS 80
                P  +V++ G PCQ FS
Sbjct: 80  PAAAPPRAEVVIGGPPCQGFS 100


>gi|302782830|ref|XP_002973188.1| hypothetical protein SELMODRAFT_98974 [Selaginella
          moellendorffii]
 gi|300158941|gb|EFJ25562.1| hypothetical protein SELMODRAFT_98974 [Selaginella
          moellendorffii]
          Length = 334

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L++ + + GIGG+R  LE+   +   VE F   EIN  +   Y+ NF +    G+I ++ 
Sbjct: 4  LRVLEFYSGIGGLRFSLEEAKIDAMVVEVF---EINELANDVYERNFGHRPNQGNIQRLS 60

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
            D+  +  D  L   PCQP+++ G
Sbjct: 61 VSDLDKYEADAWLLSPPCQPYTRQG 85


>gi|330939305|gb|EGH42698.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 382

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M    + F G G  R  L   +     EC  +++++      Y  N+  + L+ GD+A++
Sbjct: 1  MASFYEFFAGGGMARAGLGAEW-----ECLLANDLSTQKAACYAENWGDDHLLIGDVAEL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
           T+D+P H D+  A FPCQ  S AG
Sbjct: 56 TTKDLPGHADLAWASFPCQDLSLAG 80


>gi|229148238|ref|ZP_04276541.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
 gi|228635250|gb|EEK91777.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
          Length = 180

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF G+G +R+ LEQ  +     C    E N  + KTY+A  +        DI   
Sbjct: 3  LTFIDLFAGVGMMRIGLEQAGH----TCIGFCEWNEPARKTYEAMHDTEGEWTEHDIRNA 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K   IP  D+  AGFPC   S+ G
Sbjct: 59 KGTTIPRADIWTAGFPCTDISKNG 82


>gi|187934831|ref|YP_001884812.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum B str. Eklund 17B]
 gi|187722984|gb|ACD24205.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum B str. Eklund 17B]
          Length = 424

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFP-----NTLIF 53
          I +LF G+GG R+  E++    + +  ++++  P     ++ + Y+++F      N    
Sbjct: 5  ICELFAGVGGFRVGFEKS--SSDWKTVWANQWEPSKKVQHAFECYRSHFETSGGINEFSN 62

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+++  + IP H VL+ GFPCQ +S A
Sbjct: 63 IDISQVPEEHIPGHTVLVGGFPCQDYSVA 91


>gi|291336805|gb|ADD96340.1| DNA cytosine 5 methyltransferase [uncultured organism
          MedDCM-OCT-S08-C700]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ D F GIGG     E+         F   E +PY  K    ++PN  I  DI   + 
Sbjct: 4  LRLLDTFSGIGGFSYAAEKLVGGYETTQFV--ENDPYCQKVLNKHWPNVPIHDDIETYRA 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +   DV+  GFPCQ  S AG
Sbjct: 62 E-LYSADVICGGFPCQDISAAG 82


>gi|254228592|ref|ZP_04922017.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262392607|ref|YP_003284461.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
 gi|151938974|gb|EDN57807.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262336201|gb|ACY49996.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
          Length = 427

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L     F GIGG  L     F ++  E  F  E+N +     + ++    + GDI+ +  
Sbjct: 8  LNFNSFFAGIGGFDL----AFENQGFEPSFQCELNAFCQSVLKKHWGRVPLHGDISNLDA 63

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP   V   GFPCQ  S A
Sbjct: 64 SEIPKATVWCGGFPCQDLSVA 84


>gi|169834211|ref|YP_001693507.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|168996713|gb|ACA37325.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
          Hungary19A-6]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG R+ +E   +    EC    EI+ ++  +Y+A  +    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRIGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITTV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               + I   DV+  GFPCQ FS AG
Sbjct: 57 SDDTIRGIGHVDVICGGFPCQAFSIAG 83


>gi|325675056|ref|ZP_08154742.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554017|gb|EGD23693.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 398

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG+ L L        + C    EI+P + +  +  F    + GD+ ++++  +P 
Sbjct: 21 LFAGIGGVELGLRSHGWETELLC----EIDPGAQQVLRTRFAGVELHGDVTRLRS--LPQ 74

Query: 67 H-DVLLAGFPCQPFSQAG 83
            +++ AGFPCQ  SQAG
Sbjct: 75 RTELVAAGFPCQDLSQAG 92


>gi|325690436|gb|EGD32439.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis
          SK115]
          Length = 390

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKTQD 63
          D F GIGG R  LE T     ++C    E + ++ K+Y+A +         DI  I    
Sbjct: 7  DFFAGIGGFRCGLELT----GMKCIGYCEKDKFARKSYEAMYETKGEWFHDDITSINPAQ 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+  AG PCQ  S AG
Sbjct: 63 LPKADLWCAGSPCQNLSIAG 82


>gi|197106819|ref|YP_002132196.1| DNA-cytosine methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196480239|gb|ACG79767.1| DNA-cytosine methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKIKTQ 62
          + F G G  RL L   +      C F+++ +P    TY+ANFP+       GD+ K+   
Sbjct: 10 EFFAGGGMARLGLGARW-----ACAFANDFDPVKAATYRANFPDAESHFREGDVWKLGPV 64

Query: 63 DIPDH-DVLLAGFPCQPFSQAG 83
          D+P   D+  A  PCQ FS AG
Sbjct: 65 DLPGRADLAWASSPCQDFSLAG 86


>gi|325298662|ref|YP_004258579.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318215|gb|ADY36106.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 336

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L     F++   +   ++E++     TY+ NFP+  LI GDI  I 
Sbjct: 1  MTLISLFSGAGGLDL----GFHYAGFKTIIANELDAKICPTYRINFPDVKLIEGDIRNIP 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
          + + PD    ++ G PCQ +S+AG
Sbjct: 57 SSEFPDGITGIIGGPPCQSWSEAG 80


>gi|255692343|ref|ZP_05416018.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
          17565]
 gi|260621969|gb|EEX44840.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
          17565]
          Length = 297

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + +LF GIGG    L+      + E  + SEI   ++  ++ NFP     G + +I T +
Sbjct: 3  LLELFSGIGGFSKGLQAA--GYSFEKVYFSEIEKNAIANFKYNFPYAEHIGSVTEIGTAE 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   D++  G PCQ FS  G
Sbjct: 61 IGHPDIITFGSPCQNFSSVG 80


>gi|317054725|ref|YP_004103193.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
 gi|294869157|gb|ADF47149.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M KI DLF G GG+    EQ       +   + E +  + KT+  N P T +F  DI  I
Sbjct: 1  MPKIVDLFAGAGGMTEGFEQA----GYQSALAIEYDEMAAKTFSFNHPQTPVFIKDIRTI 56

Query: 60 KTQDIPDH------DVLLAGFPCQPFSQAG 83
          + + + +       DVL  G PCQ FS AG
Sbjct: 57 QEESVREALKYSPIDVLCGGPPCQGFSLAG 86


>gi|15088756|ref|NP_150145.1| putative DNA methylase [Streptococcus phage MM1]
 gi|15074902|emb|CAC48079.1| putative DNA methylase [Streptococcus phage MM1]
 gi|73747029|gb|AAZ82425.1| C5 methyltransferase alpha subunit [Streptococcus phage MM1 1998]
          Length = 385

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG R+ +E   +    EC    EI+ ++  +Y+A  +    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRIGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITTV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               + I   DV+  GFPCQ FS AG
Sbjct: 57 SDDTIRGIGHVDVICGGFPCQAFSIAG 83


>gi|158339669|ref|YP_001520676.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
          MBIC11017]
 gi|158309910|gb|ABW31526.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
          MBIC11017]
          Length = 382

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ--- 62
          D+FCG GG+ L     F     +     + NP++VKT+  NFP   +  D   I+     
Sbjct: 3  DIFCGAGGMSLG----FQKAGCKILGGIDNNPHAVKTHHQNFPKCKLKLDATDIRDIENL 58

Query: 63 -----DIPDHDVLLAGFPCQPFSQAG 83
               D  + D+L+ G PCQ FS+ G
Sbjct: 59 EDLGIDPKEVDILIGGPPCQVFSRVG 84


>gi|261415336|ref|YP_003249019.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371792|gb|ACX74537.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326638|gb|ADL25839.1| cytosine specific DNA methyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 418

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
            F G  G+ + L +      ++   +SEI P + +T   N PN  + GDI+    +DI  
Sbjct: 26  FFSGAMGLDIGLSKA----GIKVLLASEIEPNARRTILTNEPNIGLIGDISDYSAEDIRK 81

Query: 67  H---------DVLLAGFPCQPFSQAG 83
           +         DV++ G PCQ FS AG
Sbjct: 82  YANLPKNQEIDVMVGGPPCQAFSTAG 107


>gi|217977517|ref|YP_002361664.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
 gi|217502893|gb|ACK50302.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
          Length = 393

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 28 ECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
          +C F+++ +      Y  N+  N  IFGD+AKI+  D+P   D+  A FPCQ  S AG
Sbjct: 27 QCVFANDFSKMKAAAYIQNWGSNHFIFGDVAKIRPADMPGVADLAWASFPCQDLSLAG 84


>gi|144952808|gb|ABP04058.1| DNA methyltransferase 2 [Macrobrachium rosenbergii]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+I +L+ GIGG+R+  +++      +   S EIN  +++ YQ NFP T    +I  +  
Sbjct: 10 LRILELYSGIGGMRVAAKES--GLQFDIVGSYEINTTALEVYQHNFPKTPKAYNIMGLTL 67

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
            +     DV++   PCQPF++ G
Sbjct: 68 DHLESLSPDVIMMSPPCQPFTRQG 91


>gi|282897137|ref|ZP_06305139.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
 gi|281197789|gb|EFA72683.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD- 63
          DLF G GG+ L +E        E   S EI+P     +  NFPN   I  DI+ + +++ 
Sbjct: 16 DLFSGAGGLSLGIESA----GFEVVISIEIDPVHSAIHNYNFPNCANICRDISNVSSEEL 71

Query: 64 --------IPDHDVLLAGFPCQPFSQAG 83
                  I + D+L  G PCQ FSQ G
Sbjct: 72 WNILNDKHINEVDLLAGGPPCQGFSQMG 99


>gi|224044835|ref|XP_002192893.1| PREDICTED: tRNA aspartic acid methyltransferase 1 [Taeniopygia
          guttata]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L ++  H   E   + ++N  +   Y+ NFP+T ++    +   
Sbjct: 4  LRVLELYSGIGGMHQALRESCRH--AEVVAAVDVNTLANAVYKHNFPSTPLWAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +K  D    D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILLSPPCQPFTRTG 86


>gi|226363491|ref|YP_002781273.1| modification methylase [Rhodococcus opacus B4]
 gi|226241980|dbj|BAH52328.1| modification methylase [Rhodococcus opacus B4]
          Length = 381

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG+ L L +   +  + C    EI+P +    +  F +  +  D+ K+++  +P 
Sbjct: 4  LFAGIGGLELGLREHGWNTELLC----EIDPGAQAVLRTRFTDVPVHSDVTKLRS--LPQ 57

Query: 67 H-DVLLAGFPCQPFSQAG 83
          + +++ AGFPCQ  SQAG
Sbjct: 58 NIELVAAGFPCQDLSQAG 75


>gi|307155289|ref|YP_003890673.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306985517|gb|ADN17398.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK------ 58
           DLF G GGI     Q F    ++   S EINP +  TY  NFP    F GDIA+      
Sbjct: 74  DLFAGAGGI----TQGFVQAGLKPIASLEINPIASATYVKNFPQCHHFCGDIAEFLPINW 129

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +     P+  +++ G PCQ FS AG
Sbjct: 130 LNQIGSPEIHLVVGGPPCQGFSVAG 154


>gi|298385398|ref|ZP_06994956.1| C-5 cytosine-specific DNA methylase superfamily [Bacteroides sp.
          1_1_14]
 gi|298261539|gb|EFI04405.1| C-5 cytosine-specific DNA methylase superfamily [Bacteroides sp.
          1_1_14]
          Length = 420

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIK-TQDIPDHDVLLAGFPCQPFSQAG 83
          F  EINP+  +  +  FPN+  + DI K   +Q     DVL  GFPCQPFS AG
Sbjct: 28 FHCEINPFCNEILKYWFPNSEHYEDITKTDFSQWKGRIDVLTGGFPCQPFSLAG 81


>gi|313665643|ref|YP_004047514.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
 gi|312949997|gb|ADR24593.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
          Length = 327

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG+ L     F   N E   + E    +V TY  NF   +   DI  +  + 
Sbjct: 9  IIDLFAGAGGLTLG----FTQNNFEILDTVEFWQPAVDTYNYNFKKNITVKDITNLNVRQ 64

Query: 64 -IPDH-----DVLLAGFPCQPFSQAG 83
           + D+     D+++ GFPCQ FS AG
Sbjct: 65 CLQDNYKSKTDLVIGGFPCQGFSMAG 90


>gi|268680341|ref|YP_003304772.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
          6946]
 gi|268618372|gb|ACZ12737.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
          6946]
          Length = 335

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + I  LF G GG+ L  E+       +  +++E +    +T++ NFP+T L    I  I 
Sbjct: 1  MNIISLFSGAGGLDLGFEKA----GFKTVWANEYDKEIWETFEKNFPHTTLDRRSIRNIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + DIP+   L+ G PCQ +S+AG
Sbjct: 57 SCDIPEAIGLIGGPPCQSWSEAG 79


>gi|229586279|ref|YP_002844780.1| Site-specific DNA methylase [Rickettsia africae ESF-5]
 gi|228021329|gb|ACP53037.1| Site-specific DNA methylase [Rickettsia africae ESF-5]
          Length = 65

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 29 CFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          CFF   I+    + Y+ NF +   +GDI +I    IP HD+L AGFPCQ FS +G
Sbjct: 2  CFF---IDKDVQEAYKRNFGDKP-YGDITEISETKIPKHDILCAGFPCQSFSISG 52


>gi|228474527|ref|ZP_04059258.1| site-specific DNA methylase [Staphylococcus hominis SK119]
 gi|228271190|gb|EEK12558.1| site-specific DNA methylase [Staphylococcus hominis SK119]
          Length = 414

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 8/81 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ- 62
          +  LF G GG+ L     F        ++++    +V TY+ N  + +++GDI KI  + 
Sbjct: 6  VISLFAGAGGMDLG----FKKAGFNIIWANDFEKDAVTTYKNNIGDHIVYGDITKIDIKN 61

Query: 63 DIPDH---DVLLAGFPCQPFS 80
          ++P+    D+++ GFPCQ FS
Sbjct: 62 ELPNEEEIDLVIGGFPCQGFS 82


>gi|148380278|ref|YP_001254819.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum A str.
          ATCC 3502]
 gi|148289762|emb|CAL83870.1| putative C-5 cytosine-specific DNA methylase [Clostridium
          botulinum A str. ATCC 3502]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K+  LF GIG     L     +++ E     EI+ Y+   Y    N   +L  GD++KI
Sbjct: 4  IKLLSLFSGIGAFEKALSNI--NQDHEIINYCEIDKYASYAYSVLHNANESLNLGDVSKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              + D D+L  G PCQ FS AG
Sbjct: 62 NPDTLKDFDLLTHGSPCQSFSLAG 85


>gi|15920534|ref|NP_376203.1| modification methylase [Sulfolobus tokodaii str. 7]
 gi|15621317|dbj|BAB65312.1| 322aa long hypothetical modification methylase [Sulfolobus
          tokodaii str. 7]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          + DLF G GG  L     F     +  F+ +IN  + +TY  NFP TL+   DI  I  +
Sbjct: 5  VVDLFSGAGGFSLG----FKKLGFDIRFAIDINHAAARTYATNFPTTLVIEDDIRNITGR 60

Query: 63 DIP-----DHDVLLAGFPCQPFSQA 82
          DI        D+++   PC+P++ A
Sbjct: 61 DIEYLIGRKVDIVIGSPPCEPYTGA 85


>gi|328782909|ref|XP_393991.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Apis mellifera]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M+++ +L+ GIGG+   L+++    ++    + +IN  +   Y+ NFPN L+   +I  +
Sbjct: 1  MMRVLELYSGIGGMHYALQESGIKGDIVA--AVDINTVANSIYKYNFPNVLLLNCNIQSL 58

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
            Q+I +   D +L   PCQP+++ G
Sbjct: 59 SAQEINNLNIDTILMSPPCQPYTRIG 84


>gi|307210936|gb|EFN87251.1| tRNA (cytosine-5-)-methyltransferase [Harpegnathos saltator]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ +L+ GIGG+   L ++     V    + +INP +   Y+ NFP T++   +I  I 
Sbjct: 1  MKVLELYSGIGGMHFALLESGIPAKV--VAAIDINPVANDVYRHNFPETVLMNRNIQSIS 58

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           Q +   D D +L   PCQPF++ G
Sbjct: 59 AQTLNKLDVDAILMSPPCQPFTRLG 83


>gi|91205699|ref|YP_538054.1| cytosine-C5 specific DNA methylase-like protein [Rickettsia bellii
           RML369-C]
 gi|91069243|gb|ABE04965.1| Cytosine-C5 specific DNA methylase-like protein [Rickettsia bellii
           RML369-C]
          Length = 147

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 25/107 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-HRNV----------------------ECFFSSEINPY 38
           +K+  LF G GG+ L  E  FN H +                       E  F ++I   
Sbjct: 31  IKVISLFSGCGGLDLGFEGNFNIHESCIKDDDFIKSKNGNTVILKDNPFEIVFCNDIMQE 90

Query: 39  SVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +   ++ANF N L +    I ++K   +P  D+++ GFPCQ FS AG
Sbjct: 91  AKVAWEANFSNKLEYSTKSIRELKGYLLPKADLVIGGFPCQDFSLAG 137


>gi|284046510|ref|YP_003396850.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
 gi|283950731|gb|ADB53475.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLFCG GG    L Q      +    +++ +P +  TY+ NFP T L+ GD+   +
Sbjct: 7  LTAVDLFCGAGG----LSQGLADAGMHVVAAADHDPDACATYRRNFPRTVLVEGDLTSRE 62

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQ 81
            +         D D+L  G PCQ +SQ
Sbjct: 63 KHEALLDALQGSDLDLLAGGPPCQAYSQ 90


>gi|154795669|gb|ABS86795.1| putative DNA methylase [Helicobacter cetorum]
          Length = 381

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 15/93 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----GDIA 57
          LK+ DLF G+GG      + F + N     ++EI+     +Y+ N  NT++      D  
Sbjct: 4  LKVLDLFAGVGG----FSKGFENANFNIVLANEIDKEIAYSYKENHKNTIMIDSDINDFL 59

Query: 58 K----IKTQDI---PDHDVLLAGFPCQPFSQAG 83
          K    ++T+D     D DV++ G PCQ FS AG
Sbjct: 60 KHYHNLETKDKEKCKDIDVIIGGSPCQGFSMAG 92


>gi|39933426|ref|NP_945702.1| site-specific DNA-methyltransferase [Rhodopseudomonas palustris
          CGA009]
 gi|192288783|ref|YP_001989388.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|39647272|emb|CAE25793.1| possible site-specific DNA-methyltransferase [Rhodopseudomonas
          palustris CGA009]
 gi|192282532|gb|ACE98912.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 390

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G+GG+ L L +  +    +    SEI   +    +  F      GD+A +K+
Sbjct: 1  MKVAGLFAGVGGLELGLHRAGH----DTLVFSEIWDPAGAVLERRFGGVPNVGDVASLKS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P D D++ AGFPCQ  SQAG
Sbjct: 57 --LPADVDLMTAGFPCQDLSQAG 77


>gi|291561285|emb|CBL40084.1| DNA-methyltransferase (dcm) [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQA--NFPNTLIFGDI 56
          M++   LF GIG      E+  ++  +  E     E++ Y+ K Y    + P ++  GDI
Sbjct: 1  MIRYLSLFSGIGA----FEKALDNLGIPYELLAYCEVDKYASKAYSLLHHVPESMNLGDI 56

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           K+  + +P D D+L  GFPCQ  S AG
Sbjct: 57 TKVDEKALPTDIDLLTYGFPCQDISIAG 84


>gi|255073161|ref|XP_002500255.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226515517|gb|ACO61513.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 599

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------PNTL 51
           ++LF G+GG  + L ++     V   F+SE+  ++ +TY A+              P  +
Sbjct: 267 SELFAGVGGFGVAL-RSLGGTPV---FASELCGHARRTYLAHHGGSWGDDGGTDARPPLV 322

Query: 52  IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             GDI  +    +P HD+L  GFPCQ FS+ G
Sbjct: 323 CCGDITDVCETSMPPHDLLTGGFPCQSFSRRG 354


>gi|21241348|ref|NP_640930.1| cytosine methyltransferase [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21106676|gb|AAM35466.1| cytosine methyltransferase [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 106

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          +  LF G GG+   ++           FS++I   + KT +  FP++ +  GDIA +   
Sbjct: 17 VISLFSGCGGMDFGIKAAGGR----IVFSNDILADACKTLEKYFPDSTVSCGDIAAL--H 70

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          + P+ DV++ G+PCQ FS AG
Sbjct: 71 EFPEADVVVGGYPCQSFSMAG 91


>gi|308229535|gb|ADO24183.1| M.AscI [Arthrobacter sp. NEB 688]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 29 CFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          C  +++ +P  V+ Y+AN+PN  +   DI  +   DIP   +  A FPC   SQAG
Sbjct: 37 CQLANDNDPKKVRAYEANYPNVPVSALDIRDLSASDIPPATLATASFPCIDLSQAG 92


>gi|322372404|ref|ZP_08046940.1| modification methylase DdeI [Streptococcus sp. C150]
 gi|321277446|gb|EFX54515.1| modification methylase DdeI [Streptococcus sp. C150]
          Length = 387

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN------VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  + N          F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPKITMIE 60

Query: 54 GDIAKI-----KTQDIPDH--DVLLAGFPCQPFSQAG 83
           DIA I     K++ I     D+++ G PCQ FS  G
Sbjct: 61 DDIANIDESFLKSKGISSKGVDLVIGGPPCQSFSTVG 97


>gi|315639354|ref|ZP_07894516.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
          JV21]
 gi|315480680|gb|EFU71322.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
          JV21]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L     F     E  F+++I+  + ++Y+ N    ++  DI  +  ++
Sbjct: 5  VISLFSGCGGLDLG----FIKAGFEVVFANDIDKEACESYEKNIGKHILCKDIYTLDVKE 60

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          IP+ D+L+ GFPC  F+ A
Sbjct: 61 IPNADLLIGGFPCLGFTIA 79


>gi|309379756|emb|CBX21532.1| putative DNA cytosine methyltransferase M.NlaII [Neisseria
          lactamica Y92-1009]
          Length = 419

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNT----LI 52
          +K+ +LF G+GG R+ LE   N    E  ++++  P      + + Y  +FPN+    + 
Sbjct: 1  MKVLELFAGVGGFRIGLENA-NKDLFETKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   K  ++ D D+++ GFPCQ +S A
Sbjct: 60 IADITNEKFSEM-DADMIVGGFPCQDYSVA 88


>gi|307169339|gb|EFN62060.1| tRNA (cytosine-5-)-methyltransferase [Camponotus floridanus]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ +L+ GIGG+   L ++      +   + +INP +   Y+ NFP T++   +I  + 
Sbjct: 1  MKVLELYSGIGGMHYALRES--EITAKVVAAIDINPVANAVYRENFPETILMNRNIESLN 58

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           Q++     D +L   PCQPF++ G
Sbjct: 59 AQELNKLGLDAILMSPPCQPFTRLG 83


>gi|329769196|ref|ZP_08260616.1| hypothetical protein HMPREF0433_00380 [Gemella sanguinis M325]
 gi|328839415|gb|EGF88993.1| hypothetical protein HMPREF0433_00380 [Gemella sanguinis M325]
          Length = 415

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 16/97 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQT--FNHRNVECF--------FSSEINP-----YSVKTYQAN 46
          L + +LF G+GG R+ L     FN +  +          ++++  P     ++ + Y   
Sbjct: 3  LDVVELFAGVGGFRVGLNNITEFNKKTGKALEKNGWNFVWANQYEPSTKAQHAFECYSER 62

Query: 47 FPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          F +      DI K+  + IPDH +L+ GFPCQ +S A
Sbjct: 63 FQDGECSNEDINKVDKKSIPDHSLLVGGFPCQDYSVA 99


>gi|153007575|ref|YP_001368790.1| DNA (cytosine-5-)-methyltransferase [Ochrobactrum anthropi ATCC
          49188]
 gi|151559463|gb|ABS12961.1| DNA (cytosine-5-)-methyltransferase [Ochrobactrum anthropi ATCC
          49188]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ DLF GIGG  L LE+T     V      EI  +  +    ++P    + D+ ++  
Sbjct: 4  LRVLDLFSGIGGFSLGLERTGGFETVA---FCEIEEFPRRVLAKHWPEVPCYHDVRELTA 60

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
            +       DV+  GFPCQ  S AG
Sbjct: 61 AKLASDGIAIDVICGGFPCQDISTAG 86


>gi|197301928|ref|ZP_03166992.1| hypothetical protein RUMLAC_00650 [Ruminococcus lactaris ATCC
          29176]
 gi|197298996|gb|EDY33532.1| hypothetical protein RUMLAC_00650 [Ruminococcus lactaris ATCC
          29176]
          Length = 134

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    +LF G GG+ L +E+       +    +E N  +  T + N PN  +I GD+A+I
Sbjct: 1  MFTTIELFAGAGGLALGIEKA----GFKTLALNEFNADACATLRKNRPNWNVIEGDVAEI 56

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ ++        D+L  G PCQ FS AG
Sbjct: 57 SGLDLEEYFSVRKGELDLLSGGAPCQAFSYAG 88


>gi|157827940|ref|YP_001494182.1| site-specific DNA methylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165932629|ref|YP_001649418.1| hypothetical protein RrIowa_0090 [Rickettsia rickettsii str.
          Iowa]
 gi|157800421|gb|ABV75674.1| Site-specific DNA methylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165907716|gb|ABY72012.1| hypothetical protein RrIowa_0090 [Rickettsia rickettsii str.
          Iowa]
          Length = 65

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 29 CFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          CFF   I+    + Y+ NF +   +GDI +I    IP HD+L AGFPCQ FS +G
Sbjct: 2  CFF---IDKDVQEAYKRNFGDKP-YGDIMEISETKIPKHDILCAGFPCQSFSISG 52


>gi|313123965|ref|YP_004034224.1| modification methylase rho11Si family protein [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
 gi|312280528|gb|ADQ61247.1| Modification methylase Rho11sI family protein [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
          Length = 349

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          +K  DLF GIGG    LE+  +     C    E + ++ ++YQA +    ++   DI  +
Sbjct: 1  MKFIDLFAGIGGFHTGLEKAGH----TCVGWVEWDKFARQSYQAIYDTDGLYTATDIQDV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D+PD D+   G PC   S AG
Sbjct: 57 KGVDLPDADLWTFGSPCTDISLAG 80


>gi|261400519|ref|ZP_05986644.1| modification methylase Sau3AI [Neisseria lactamica ATCC 23970]
 gi|269209782|gb|EEZ76237.1| modification methylase Sau3AI [Neisseria lactamica ATCC 23970]
          Length = 383

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNT----LI 52
          +K+ +LF G+GG R+ LE   N    E  ++++  P      + + Y  +FPN+    + 
Sbjct: 1  MKVLELFAGVGGFRIGLENA-NKDLFETKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   K  ++ D D+++ GFPCQ +S A
Sbjct: 60 IADITNEKFSEM-DADMIVGGFPCQDYSVA 88


>gi|193071751|ref|ZP_03052649.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|192954951|gb|EDV85456.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
          Length = 374

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGDIA 57
           ++ DLFCG GG    L   F H  +  +F S +    N  ++ TY ANF    +  +I 
Sbjct: 9  FRVIDLFCGAGG----LSYGFLHGEMSDYFESILAIDNNAAAINTYNANFGLHGVQANIE 64

Query: 58 KIKTQD-IPDHDVLLAGFPCQPFS 80
          +  + + +P+ DV++ G PCQ FS
Sbjct: 65 EWASSNTVPEADVVIGGPPCQGFS 88


>gi|288927044|ref|ZP_06420936.1| site-specific DNA-methyltransferase [Prevotella buccae D17]
 gi|288336182|gb|EFC74571.1| site-specific DNA-methyltransferase [Prevotella buccae D17]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-TQDIP 65
          LF GIG   L        +N+   F  EI  +  K  +  FPN++ + DI K   T+   
Sbjct: 10 LFSGIGAPEL-AAHWMGWKNL---FHCEIQEFQRKVLEYWFPNSVSYEDITKTDFTEWRG 65

Query: 66 DHDVLLAGFPCQPFSQAG 83
            D+L  GFPCQPFS AG
Sbjct: 66 KVDILTGGFPCQPFSVAG 83


>gi|91201234|emb|CAJ74294.1| similar to site-specific DNA-methyltransferase
          (cytosine-specific) [Candidatus Kuenenia
          stuttgartiensis]
          Length = 313

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV-------ECFFSSEINPYSVKTYQANFPNTLIFG 54
          + +  LF G GG+ L     F+   V       E  +++E++  + +TY+ N    ++ G
Sbjct: 8  ITVVSLFAGCGGMDLGFSGGFDFLGVHYARTQFEIIWANELSGAACRTYRKNIGQHIVEG 67

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI +  ++   + DV++ GFPCQ  S  G
Sbjct: 68 DIWQAISEMPKNADVVIGGFPCQDISVNG 96


>gi|315222617|ref|ZP_07864506.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
 gi|315188303|gb|EFU22029.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
          Length = 348

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +  LF G GG+ L  E+  FN        ++E +    +TY+ N    LI GDI  I 
Sbjct: 9  MNLISLFSGAGGLDLGFEKAGFN-----VVAANEYDKTIWETYEKNHDTKLIKGDICGIP 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          ++  P  D ++ G PCQ +S+AG
Sbjct: 64 SEMFPKCDGIIGGPPCQSWSEAG 86


>gi|83944557|ref|ZP_00957008.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
 gi|83844594|gb|EAP82480.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
          Length = 373

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          + F G G +R  L   +      C F+++++P   + Y+ N+  + L+  DIA + + ++
Sbjct: 5  EFFAGGGMVRAGLGVRW-----RCLFANDVSPKKARIYRRNWGGDALVLADIAALTSAEL 59

Query: 65 PD-HDVLLAGFPCQPFSQAG 83
          PD  D++   FPCQ  S AG
Sbjct: 60 PDVPDLVWGSFPCQDLSVAG 79


>gi|329767389|ref|ZP_08258914.1| hypothetical protein HMPREF0428_00611 [Gemella haemolysans M341]
 gi|328836078|gb|EGF85769.1| hypothetical protein HMPREF0428_00611 [Gemella haemolysans M341]
          Length = 144

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          ++ DLF G+GG    L + F     E   ++E++     +Y+ N P   +I  DI+K+  
Sbjct: 4  QVIDLFSGVGG----LSKGFFDSGFEIVLANEVDYSIANSYKKNHPKVKMINEDISKLDI 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
           D+ +     DV++ G PCQ FSQ G
Sbjct: 60 DDVFNEYKNIDVIVGGPPCQGFSQKG 85


>gi|156552675|ref|XP_001599223.1| PREDICTED: similar to DNA cytosine-5 methyltransferase 3B2 [Nasonia
           vitripennis]
          Length = 1093

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI- 59
           +++  LF GIG   + L+    + N+EC+++SEI+P S++    N  N +I  GD+  I 
Sbjct: 824 IRVLSLFDGIGTGLVVLKHL--NVNIECYYASEIDPDSMQVSFFNHGNEIIQLGDVRNID 881

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
             K ++I   D+L+ G PC   S A
Sbjct: 882 EKKIKEIAPIDLLIGGSPCNELSLA 906


>gi|8489198|gb|AAF75616.1|AF216814_7 5-methylcytosine methyltransferase [Lactococcus lactis subsp.
          lactis bv. diacetylactis]
 gi|3702801|gb|AAC77904.1| LlaKR2I methylase enzyme [Lactococcus lactis]
          Length = 420

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQT----FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          +K+ +LF G+GG R+ LE      F  +    +  S  +  + + Y  +FPN+    +  
Sbjct: 1  MKVLELFAGVGGFRIGLENADKNLFKTKWSNQWEPSRKSQDAFEVYDYHFPNS----ENI 56

Query: 58 KIKTQDIPDH-------DVLLAGFPCQPFSQA 82
           I   DIPD        D+++ GFPCQ +S A
Sbjct: 57 NISISDIPDEKFAEMDADIIVGGFPCQDYSVA 88


>gi|284053792|ref|ZP_06384002.1| cytosine-specific DNA methylase [Arthrospira platensis str. Paraca]
 gi|291570060|dbj|BAI92332.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 418

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD- 63
           DLF G+GGI     Q F         S EINP +  T+Q NFPN   F GD+        
Sbjct: 80  DLFSGVGGI----TQGFWQAGFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFNPHQW 135

Query: 64  -----IPDHDVLLAGFPCQPFSQAG 83
                 P   +++ G PCQ FS AG
Sbjct: 136 LSKIGSPSVHLVVGGPPCQGFSVAG 160


>gi|29566487|ref|NP_818053.1| gp80 [Mycobacterium phage Che9d]
 gi|29425212|gb|AAN07998.1| gp80 [Mycobacterium phage Che9d]
          Length = 252

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          + +  LF GIGG+ L LE+      +      EINPY  +    ++P+     D+     
Sbjct: 1  MNVLSLFSGIGGLELGLERA----GMTVVGQVEINPYCRQILAKHWPHVPRHDDVRTTVE 56

Query: 60 --KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++++ P  D++  GFPCQ  S AG
Sbjct: 57 WWESEERPRVDLICGGFPCQDISNAG 82


>gi|108797795|ref|YP_637992.1| DNA-cytosine methyltransferase [Mycobacterium sp. MCS]
 gi|119866887|ref|YP_936839.1| DNA-cytosine methyltransferase [Mycobacterium sp. KMS]
 gi|108768214|gb|ABG06936.1| DNA-cytosine methyltransferase [Mycobacterium sp. MCS]
 gi|119692976|gb|ABL90049.1| DNA-cytosine methyltransferase [Mycobacterium sp. KMS]
          Length = 385

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF GIGG+ + L ++     + C    EI+P +      + P+  +  D+ +++   
Sbjct: 5  VAGLFAGIGGLEVGLSRSGWETTLLC----EIDPAARAVLSHHMPDVELQDDVRRLRA-- 58

Query: 64 IPDH-DVLLAGFPCQPFSQAG 83
          +P   D+L AGFPCQ  SQAG
Sbjct: 59 LPQSLDLLAAGFPCQDLSQAG 79


>gi|251792768|ref|YP_003007494.1| DNA-cytosine methyltransferase [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534161|gb|ACS97407.1| DNA-cytosine methyltransferase [Aggregatibacter aphrophilus
          NJ8700]
          Length = 383

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+     Q ++PN    GD+     KI  ++IP  DVL+ G PCQ +S AG
Sbjct: 28 SEIEPFPCALLQHHYPNVPNLGDMQNLPQKILHREIPAPDVLIGGTPCQSYSYAG 82


>gi|57506146|ref|ZP_00372067.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
 gi|57015541|gb|EAL52334.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
          Length = 316

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L     F     E  F+++I+  + ++Y+ N    ++  DI  +  ++
Sbjct: 1  MISLFSGCGGLDLG----FIKAGFEIVFANDIDKEACESYEKNIGKHILCKDIYTLDMKE 56

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          IP+ D+L+ GFPC  F+ A
Sbjct: 57 IPNADILIGGFPCLGFTIA 75


>gi|160947479|ref|ZP_02094646.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
 gi|158446613|gb|EDP23608.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
          Length = 348

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +  LF G GG+ L  E+  FN        ++E +    +TY+ N    LI GDI  I 
Sbjct: 9  MNLVSLFSGAGGLDLGFERAGFN-----IVVANEYDKTIWETYEKNHKTKLIKGDICGIP 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +   P  D ++ G PCQ +S+AG
Sbjct: 64 SDMFPKCDGIIGGPPCQSWSEAG 86


>gi|254526757|ref|ZP_05138809.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
          9202]
 gi|221538181|gb|EEE40634.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
          9202]
          Length = 298

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 21/25 (84%)

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          + T+ IP HDVLLAGFPCQPFS AG
Sbjct: 1  MDTKSIPSHDVLLAGFPCQPFSLAG 25


>gi|240127759|ref|ZP_04740420.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae SK-93-1035]
          Length = 347

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--IPDHDVLLAGFPCQPF 79
          F+    E  ++++ + ++ ++++ N  + ++ GDI +I   D  IPD D++L GFPCQ F
Sbjct: 5  FHQAGCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPNDPTIPDCDIILGGFPCQDF 64

Query: 80 S 80
          S
Sbjct: 65 S 65


>gi|240114016|ref|ZP_04728506.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae MS11]
          Length = 333

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPRHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLTNCLNGQSVDLVIGGPPCQGFSMAG 89


>gi|322796386|gb|EFZ18927.1| hypothetical protein SINV_80475 [Solenopsis invicta]
          Length = 354

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ++++ +L+ GIGG+   L ++     V    + +INP +   Y  NFP T LI  +I  I
Sbjct: 8  IMRVMELYSGIGGMHYALCESGIAAKV--VTAIDINPIANDVYHHNFPETVLINRNIQSI 65

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
            Q++   + D++L   PCQPF++ G
Sbjct: 66 NAQELNKLNIDIILMSPPCQPFTRLG 91


>gi|194098099|ref|YP_002001147.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae NCCP11945]
 gi|239998556|ref|ZP_04718480.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|240013681|ref|ZP_04720594.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI18]
 gi|240016120|ref|ZP_04722660.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA6140]
 gi|240080261|ref|ZP_04724804.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|240112474|ref|ZP_04726964.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae MS11]
 gi|240115214|ref|ZP_04729276.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID18]
 gi|240120750|ref|ZP_04733712.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID24-1]
 gi|240123054|ref|ZP_04736010.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID332]
 gi|240125307|ref|ZP_04738193.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae SK-92-679]
 gi|193933389|gb|ACF29213.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae NCCP11945]
 gi|317163831|gb|ADV07372.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 347

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--IPDHDVLLAGFPCQPF 79
          F+    E  ++++ + ++ ++++ N  + ++ GDI +I   D  IPD D++L GFPCQ F
Sbjct: 5  FHQAGCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPNDPTIPDCDIILGGFPCQDF 64

Query: 80 S 80
          S
Sbjct: 65 S 65


>gi|157953266|ref|YP_001498157.1| hypothetical protein AR158_C075L [Paramecium bursaria Chlorella
          virus AR158]
 gi|156067914|gb|ABU43621.1| hypothetical protein AR158_C075L [Paramecium bursaria Chlorella
          virus AR158]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+  DLF GIGG    L        ++     E   +        FP+  IF D+    
Sbjct: 4  MLRSLDLFSGIGGNSYALRDI-----LKPIAYVEREQHLRDFLGRKFPDVPIFDDVVTFD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ + D D++ AGFPC  FS AG
Sbjct: 59 TRSVKDIDIITAGFPCTGFSTAG 81


>gi|53804329|ref|YP_114062.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758090|gb|AAU92381.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 345

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
             +  LF G GG+ L     F               +++EIN  + +TY+ N  + +  G
Sbjct: 42  FSVISLFSGCGGMDLGFRGGFEFLGKRYAKLPFNVIWANEINEAACQTYRRNLGSHIHHG 101

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++     P+ DV++ GFPCQ  S  G
Sbjct: 102 DIWQMMDSLPPEADVVIGGFPCQDISVNG 130


>gi|59802210|ref|YP_208922.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA 1090]
 gi|239997871|ref|ZP_04717795.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae 35/02]
 gi|240015148|ref|ZP_04722061.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae DGI18]
 gi|240017596|ref|ZP_04724136.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA6140]
 gi|240081740|ref|ZP_04726283.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA19]
 gi|240116752|ref|ZP_04730814.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID18]
 gi|240118973|ref|ZP_04733035.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID1]
 gi|240122219|ref|ZP_04735181.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID24-1]
 gi|240124509|ref|ZP_04737465.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID332]
 gi|240124618|ref|ZP_04737504.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae SK-92-679]
 gi|240129189|ref|ZP_04741850.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae SK-93-1035]
 gi|260439487|ref|ZP_05793303.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae DGI2]
 gi|268593717|ref|ZP_06127884.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597838|ref|ZP_06132005.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683185|ref|ZP_06150047.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          SK-92-679]
 gi|291042721|ref|ZP_06568462.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398253|ref|ZP_06642458.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|2330911|gb|AAC45838.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]
 gi|59719105|gb|AAW90510.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA 1090]
 gi|268547106|gb|EEZ42524.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551626|gb|EEZ46645.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623469|gb|EEZ55869.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          SK-92-679]
 gi|291013155|gb|EFE05121.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611516|gb|EFF40586.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317165321|gb|ADV08862.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 333

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPRHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLTNCLNGQSVDLVIGGPPCQGFSMAG 89


>gi|308172812|ref|YP_003919517.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307605676|emb|CBI42047.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
          Length = 406

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCG--IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + + +LFCG  +G I       F         + + +  +VK Y+ NF + +   DI+ +
Sbjct: 105 MNVLELFCGGGLGAI------GFKAAGYNIVKALDFDKNAVKAYRHNFGDYVEQADISAV 158

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
               +PD DV+  G PCQ FS AG
Sbjct: 159 DIDSLPDTDVIFGGPPCQDFSVAG 182


>gi|256375192|ref|YP_003098852.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255919495|gb|ACU35006.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 361

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQ 62
          + DLF G GG    +   F     E   + E + ++  TY ANF    + + DIA +   
Sbjct: 1  MIDLFAGCGG----MTSGFTSAGFEPVMAVEHDLHAASTYAANFGEDHVRWADIAAVPDS 56

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  DV++ G PCQ FS  G
Sbjct: 57 AVPRVDVVVGGPPCQGFSTLG 77


>gi|157826842|ref|YP_001495906.1| cytosine-C5 specific DNA methylase [Rickettsia bellii OSU 85-389]
 gi|157802146|gb|ABV78869.1| Cytosine-C5 specific DNA methylase [Rickettsia bellii OSU 85-389]
          Length = 374

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 25/107 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-HRN----------------------VECFFSSEINPY 38
           +K+  LF G GG+ L  E  FN H +                       E  F ++I   
Sbjct: 31  IKVISLFSGCGGLDLGFEGNFNIHESCIKDDDFIKSKNGNTVILKDNPFEIVFCNDIMQE 90

Query: 39  SVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +   ++ANF N L +    I ++K   +P  D+++ GFPCQ FS AG
Sbjct: 91  AKVAWEANFSNKLEYSTKSIRELKGYLLPKADLVIGGFPCQDFSLAG 137


>gi|157952392|ref|YP_001497284.1| hypothetical protein NY2A_B088L [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155122619|gb|ABT14487.1| hypothetical protein NY2A_B088L [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+  DLF GIGG    L        ++     E   +        FP+  IF D+    
Sbjct: 4  MLRSLDLFSGIGGNSYALRDI-----LKPVAYVEREQHLRDFLGRKFPDVPIFDDVVTFD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ + D D++ AGFPC  FS AG
Sbjct: 59 TRSVKDIDIITAGFPCTGFSTAG 81


>gi|112818953|gb|ABI23560.1| DNA methyltransferase 2 [Artemia franciscana]
          Length = 379

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +++ +LF G+GG+ + +       N++   S EIN  +VKTYQ NF + ++   +I  + 
Sbjct: 4  IQVLELFAGLGGLHIAVNNQ-KDANIQVVKSFEINVNAVKTYQENFGHDVVSNRNILSLS 62

Query: 61 TQDIPDHDV--LLAGFPCQPFSQAG 83
          T+++   +V  +    PCQPF++ G
Sbjct: 63 TEELFRQNVNAIFMSPPCQPFTRLG 87


>gi|145630454|ref|ZP_01786235.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
           R3021]
 gi|144984189|gb|EDJ91626.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
           R3021]
          Length = 362

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33  SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 150 SEIEPFPCAVLAYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSVAG 204


>gi|124005671|ref|ZP_01690510.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123988739|gb|EAY28345.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L   Q     NV   F+ E NP+     +  +P+T+ + DI +  T
Sbjct: 1  MRHASLFSGLGGFDL-AAQRMGWVNV---FTVENNPFCQAILRHYWPDTIHYEDIRQ--T 54

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
             P +   D++  GFPCQPFS AG
Sbjct: 55 NFHPYYGKVDIITGGFPCQPFSNAG 79


>gi|300863842|ref|ZP_07108767.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
 gi|300338190|emb|CBN53913.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ- 62
            DLFCG GG+   L Q       +   S E NP +  T+Q NFP    F GDI     Q 
Sbjct: 63  VDLFCGAGGMTQGLVQA----GFQPVASVEANPIASATHQKNFPKCHHFCGDIKSFSPQQ 118

Query: 63  -----DIPDHDVLLAGFPCQPFSQAG 83
                + P   +++ G PCQ FS AG
Sbjct: 119 WLSQINSPKVHLVVGGPPCQGFSVAG 144


>gi|170680813|ref|YP_001746263.1| DNA-cytosine methyltransferase family protein [Escherichia coli
          SMS-3-5]
 gi|307315390|ref|ZP_07594959.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|33413740|gb|AAN28260.1| Mth [Enterobacteria phage WPhi]
 gi|170518531|gb|ACB16709.1| DNA-cytosine methyltransferase family protein [Escherichia coli
          SMS-3-5]
 gi|306905264|gb|EFN35809.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|315063217|gb|ADT77544.1| DNA cytosine methylase [Escherichia coli W]
 gi|323380718|gb|ADX52986.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          M  +  LF G GG     L   FN        +++I PY+   Y  N P T  I GDI+ 
Sbjct: 1  MPTVVSLFSGCGGSDAGVLNAGFN-----VLMANDILPYARDVYLENHPETDYILGDISG 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  Q  P  ++L+  +PCQ FSQ G
Sbjct: 56 L--QSFPSAELLIGCYPCQGFSQGG 78


>gi|328946815|gb|EGG40952.1| modification methylase DdeI [Streptococcus sanguinis SK1087]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-----FNHRN-VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T     F  RN     F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPRVTMIE 60

Query: 54 GDIAKI-----KTQDIPDH--DVLLAGFPCQPFSQAG 83
           DIA I     K++ I     D+++ G PCQ FS  G
Sbjct: 61 EDIANIDKHFLKSKGISSKRVDLVIGGPPCQSFSTVG 97


>gi|1098476|gb|AAC37047.1| orf; homologous to Haemophilus parahaemolyticus hphIM(C)
          Accession Number M24625 [Neisseria meningitidis]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|325127899|gb|EGC50802.1| DNA-cytosine methyltransferase [Neisseria meningitidis N1568]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F+  N+     FS +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|323356693|ref|YP_004223089.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
 gi|323273064|dbj|BAJ73209.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
          Length = 360

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCG GG+ L L+Q      ++     +++P     Y+ N     I  D+  +K  D+ 
Sbjct: 12 DLFCGAGGLSLGLKQA----GIDVVAGIDLDPACQYPYEQNLKAQFILKDVGDVKGVDLQ 67

Query: 65 ---PDHDV-LLAG-FPCQPFS 80
             P+  + LLAG  PCQPFS
Sbjct: 68 ALWPEGKLRLLAGCAPCQPFS 88


>gi|295100151|emb|CBK89240.1| DNA-methyltransferase (dcm) [Eubacterium cylindroides T2-87]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-------- 55
          I +LF G+GG RL  E+  +      F  S+  P   +T  AN      FGD        
Sbjct: 5  ICELFAGVGGFRLGFERADSGWKTTWF--SQWEP-GARTQWANQCYVQHFGDSPDINGEF 61

Query: 56 -----IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
               I+ +    IPDH +L+ GFPCQ +S A
Sbjct: 62 HTCEDISTVDKNAIPDHTLLVGGFPCQDYSVA 93


>gi|119485563|ref|ZP_01619838.1| modification methylase [Lyngbya sp. PCC 8106]
 gi|119456888|gb|EAW38015.1| modification methylase [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++ DLF G GG+ L L+Q  FN   V  F   E    ++K YQ NF + +  G++ +++
Sbjct: 1  MRVVDLFAGCGGLSLGLQQAGFN--IVAAFDDWE---SAIKVYQKNFAHPIFSGNLQEVQ 55

Query: 61 TQ-DIP---DHDVLLAGFPCQPFSQAG 83
          T  D+      +V++ G PCQ FS AG
Sbjct: 56 TAVDLIKPFSPNVIVGGPPCQDFSSAG 82


>gi|330835884|ref|YP_004410612.1| DNA-cytosine methyltransferase [Metallosphaera cuprina Ar-4]
 gi|329568023|gb|AEB96128.1| DNA-cytosine methyltransferase [Metallosphaera cuprina Ar-4]
          Length = 321

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+ DLF G GG      + F  +  E   + ++N  + +TY +NFP  T++  DI  +  
Sbjct: 5  KVVDLFSGAGG----FAKGFKLQGFEISLAIDLNHAAARTYSSNFPTATVLEEDIRNVTG 60

Query: 62 QDI-----PDHDVLLAGFPCQPFSQA 82
          +DI        DV++   PC+PF+ A
Sbjct: 61 KDIIGLIGSRPDVVIGSPPCEPFTGA 86


>gi|325845888|ref|ZP_08169086.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481794|gb|EGC84826.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 434

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 16/97 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN----------HRNVECFFSSEINPYS-----VKTYQAN 46
          L + +LF G+GG R+ L +  N          + + +  ++++  P +      + Y   
Sbjct: 3  LTVVELFAGVGGFRVGLNKVTNFDEKSGKAIENGDWKFLWANQWEPSTKSQPAFECYSKR 62

Query: 47 FPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          F  ++    DI K+  + IP+H++L+ GFPCQ +S A
Sbjct: 63 FNESMNSNIDINKVNKESIPNHNLLVGGFPCQDYSVA 99


>gi|257058000|ref|YP_003135888.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256588166|gb|ACU99052.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 423

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + +LF G GG+ L LE       ++     EI+   V T Q N P   +I  D+ KI 
Sbjct: 73  LSVIELFAGCGGMALGLENA----GLKTELLVEIDRDCVNTLQKNRPYWPIIQEDVTKID 128

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
            +      D++L GFPCQ FS AG
Sbjct: 129 FRSYQGKIDIVLGGFPCQAFSYAG 152


>gi|83859530|ref|ZP_00953050.1| DNA-cytosine methyltransferase [Oceanicaulis alexandrii HTCC2633]
 gi|83851889|gb|EAP89743.1| DNA-cytosine methyltransferase [Oceanicaulis alexandrii HTCC2633]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
          + FCG G  RL L   +      C F+++I+      Y+ NF +     GD+  +K  D+
Sbjct: 15 EFFCGGGMARLGLGAHW-----RCHFANDIDADKANAYRDNFGDDHFHQGDVCALKPSDL 69

Query: 65 P-DHDVLLAGFPCQPFSQAG 83
          P + D+  A FPCQ  S AG
Sbjct: 70 PGEADLAWASFPCQDLSLAG 89


>gi|304388871|ref|ZP_07370921.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|302028149|gb|ADK90963.1| unknown [Neisseria meningitidis]
 gi|304337164|gb|EFM03348.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|316985914|gb|EFV64853.1| modification methylase HphIA [Neisseria meningitidis H44/76]
 gi|325143322|gb|EGC65656.1| cytosine-specificmethyltransferase HphIA [Neisseria meningitidis
          961-5945]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|325144138|gb|EGC66445.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325200491|gb|ADY95946.1| DNA-cytosine methyltransferase [Neisseria meningitidis H44/76]
          Length = 406

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F+  N+     FS +I+PY  K+Y  N+         DI 
Sbjct: 33  IRLATVFSGIGAV----EQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 88

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 89  QFDARKFRNQVDILVGGSPCQAFSMVG 115


>gi|91213886|ref|YP_543872.1| hypothetical protein UTI89_C4938 [Escherichia coli UTI89]
 gi|110644679|ref|YP_672409.1| modification methylase [Escherichia coli 536]
 gi|191170832|ref|ZP_03032384.1| modification methylase HgiDII [Escherichia coli F11]
 gi|300974517|ref|ZP_07172633.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|91075460|gb|ABE10341.1| hypothetical protein UTI89_C4938 [Escherichia coli UTI89]
 gi|110346271|gb|ABG72508.1| modification methylase [Escherichia coli 536]
 gi|190909056|gb|EDV68643.1| modification methylase HgiDII [Escherichia coli F11]
 gi|300308872|gb|EFJ63392.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|307629406|gb|ADN73710.1| DNA-cytosine methyltransferase [Escherichia coli UM146]
 gi|315290903|gb|EFU50272.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|324010993|gb|EGB80212.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 348

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + D FCG GG    L Q       +     +I+  + +T++ANFP+   I  DI KI+ Q
Sbjct: 3  VIDFFCGCGGASEGLRQA----GFDIELGLDIDQQASETFKANFPDAKFIQDDIRKIEPQ 58

Query: 63 DIPD-------HDVLLAG-FPCQPFSQ 81
          DI D         +LL+   PCQPFSQ
Sbjct: 59 DISDIIDIKAKRPLLLSACAPCQPFSQ 85


>gi|262171500|ref|ZP_06039178.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
 gi|261892576|gb|EEY38562.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           K+ +LF G GG+ L +EQ      ++  F +E++ Y+ +T + N P   ++ GDI+KI  
Sbjct: 79  KLVELFAGGGGLALGMEQA----GLQSIFLNELDKYACETLRHNRPEWNVVEGDISKIDF 134

Query: 62  QDIPDH-DVLLAGFPCQPFSQAG 83
             I +  D+L  GFPCQ FS AG
Sbjct: 135 TTITEPVDILTGGFPCQAFSYAG 157


>gi|228478395|ref|ZP_04063003.1| modification methylase HaeIII [Streptococcus salivarius SK126]
 gi|228250074|gb|EEK09344.1| modification methylase HaeIII [Streptococcus salivarius SK126]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN------VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  + N          F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPEITMIE 60

Query: 54 GDIAKI-----KTQDIPDH--DVLLAGFPCQPFSQAG 83
           DIA I     K++ I     D+++ G PCQ FS  G
Sbjct: 61 DDIANIDESFLKSKGISPKGVDLVIGGPPCQSFSTVG 97


>gi|257464589|ref|ZP_05628960.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
          202]
 gi|257450249|gb|EEV24292.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
          202]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L   DLF G GG  L     F+        S EI PY  +TY+ANFP   I   D+ ++ 
Sbjct: 3  LTYIDLFSGAGGFSLG----FDRVGFCQLLSVEIEPYYCETYRANFPKHHILQRDLTELP 58

Query: 61 TQDI------PDHDVLLAGFPCQPFSQAG 83
            ++         DV++ G PCQ FS AG
Sbjct: 59 DDELLVLLDNQKVDVVIGGPPCQGFSMAG 87


>gi|15676724|ref|NP_273868.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7226061|gb|AAF41239.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308389005|gb|ADO31325.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
 gi|316984499|gb|EFV63467.1| modification methylase HpaII [Neisseria meningitidis H44/76]
 gi|325129944|gb|EGC52743.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325140023|gb|EGC62552.1| DNA-cytosine methyltransferase [Neisseria meningitidis CU385]
 gi|325206334|gb|ADZ01787.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F+  N+     FS +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|68249848|ref|YP_248960.1| modification methylase Bsp6I-like [Haemophilus influenzae
          86-028NP]
 gi|68058047|gb|AAX88300.1| modification methylase Bsp6I-like [Haemophilus influenzae
          86-028NP]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 28 SEIEPFPCAVLAYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|157952312|ref|YP_001497204.1| hypothetical protein NY2A_B008R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155122539|gb|ABT14407.1| hypothetical protein NY2A_B008R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 11/87 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHR--NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          L+   LF G GG       TF  +   V+    SE++  ++KT+ +N P+ +  GD++ I
Sbjct: 4  LRAISLFAGAGG------DTFGMKLAGVDVVAFSELDADAMKTHNSNNPDCVALGDVSLI 57

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
              +    + D++ AGFPCQ FS AG
Sbjct: 58 DEAMLSQFVNIDIIFAGFPCQGFSNAG 84


>gi|254673893|emb|CBA09676.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
          alpha275]
          Length = 326

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|229844460|ref|ZP_04464600.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          6P18H1]
 gi|229812709|gb|EEP48398.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          6P18H1]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 28 SEIEPFPCAVLAYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|255022454|ref|ZP_05294440.1| hypothetical protein LmonocyFSL_01025 [Listeria monocytogenes FSL
          J1-208]
          Length = 150

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIK--- 60
          DLF G+GG RL +E    H+   C    EI+ Y+  +Y A       F   DI  I    
Sbjct: 15 DLFAGVGGFRLGMEAA-GHK---CVGYVEIDKYARTSYTAIHQTEGEFEGHDITSISDDV 70

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + I   D++  GFPCQ FS AG
Sbjct: 71 IRSIGRVDIITGGFPCQAFSIAG 93


>gi|240143787|ref|ZP_04742388.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
          intestinalis L1-82]
 gi|257204222|gb|EEV02507.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
          intestinalis L1-82]
          Length = 333

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + D FCG GG+ +     F +   +   + + + Y+V++Y  N  + +   DI ++  QD
Sbjct: 5  VNDFFCGCGGMGV----GFLNAGYKIAGAWDFDKYAVQSYDHNVGHHVKQADIKEMTWQD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P   V   GFPCQ  S AG
Sbjct: 61 VPFAHVWAFGFPCQDLSVAG 80


>gi|332796494|ref|YP_004457994.1| DNA-cytosine methyltransferase [Acidianus hospitalis W1]
 gi|332694229|gb|AEE93696.1| DNA-cytosine methyltransferase [Acidianus hospitalis W1]
          Length = 323

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          LK+ DLF G GG  L     F ++      + +IN  + + Y  NFP+T++   DI  + 
Sbjct: 3  LKVVDLFSGAGGFSLG----FKNQGFNIALAIDINHAAARAYAQNFPSTVVLEEDIRNVT 58

Query: 61 TQDIPD-----HDVLLAGFPCQPFSQA 82
           ++I D      D+L+   PC+ F+ A
Sbjct: 59 GEEIIDILGSSPDILIGSPPCEGFTAA 85


>gi|119489697|ref|ZP_01622456.1| putative 5-methylcytosine methyltransferase [Lyngbya sp. PCC
          8106]
 gi|119454434|gb|EAW35583.1| putative 5-methylcytosine methyltransferase [Lyngbya sp. PCC
          8106]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   LEQ       EC    + +  S++T+QAN  +  +I GD+ +I  +DI
Sbjct: 7  DLFSGAGGMSCGLEQA----GFECILGIDQDKASLETFQANHHHANIICGDLREITLEDI 62

Query: 65 PDH------DVLLAGFPCQPFSQAG 83
           +       D++  G PCQ FS  G
Sbjct: 63 YEQIDNQTVDLICGGPPCQGFSTIG 87


>gi|294782269|ref|ZP_06747595.1| modification methylase Sau3AI [Fusobacterium sp. 1_1_41FAA]
 gi|294480910|gb|EFG28685.1| modification methylase Sau3AI [Fusobacterium sp. 1_1_41FAA]
          Length = 423

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 2  LKITDLFCGIGGIRLDLE---------QTFNHRNVECFFSSEINP-----YSVKTYQANF 47
          L + +LF G+GG R+ L          +   +   E  ++++  P     Y+   Y   F
Sbjct: 3  LTVIELFAGVGGFRVGLNNIIKIDSQNKAVENGKWEFIWANQFEPSTKAQYAFDCYVTRF 62

Query: 48 PNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
              I   DI K+K   IP H +L+ GFPCQ +S A
Sbjct: 63 GKENISNEDINKVKKNLIPKHSLLVGGFPCQDYSVA 98


>gi|221236677|ref|YP_002519114.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
 gi|220965850|gb|ACL97206.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
          Length = 381

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKI 59
          +  + F G G  RL L   +      C F+++ +P    TY+ANF +       GD+  +
Sbjct: 15 RFLEFFAGGGMARLGLGADW-----ACAFANDFDPVKAATYRANFADAGKHFQEGDVFAL 69

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + +PD D+  A  PCQ FS
Sbjct: 70 SAERLPDADLAWASSPCQDFS 90


>gi|16127856|ref|NP_422420.1| DNA-cytosine methyltransferase [Caulobacter crescentus CB15]
 gi|13425378|gb|AAK25588.1| DNA-cytosine methyltransferase [Caulobacter crescentus CB15]
          Length = 374

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKI 59
          +  + F G G  RL L   +      C F+++ +P    TY+ANF +       GD+  +
Sbjct: 8  RFLEFFAGGGMARLGLGADW-----ACAFANDFDPVKAATYRANFADAGKHFQEGDVFAL 62

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + +PD D+  A  PCQ FS
Sbjct: 63 SAERLPDADLAWASSPCQDFS 83


>gi|329122250|ref|ZP_08250838.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
          11116]
 gi|327473811|gb|EGF19228.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
          11116]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 28 SEIEPFPCAVLAYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|325133150|gb|EGC55821.1| modification methylase HphIA [Neisseria meningitidis M6190]
 gi|325138766|gb|EGC61318.1| modification methylase HphIA [Neisseria meningitidis ES14902]
 gi|325197365|gb|ADY92821.1| modification methylase HphIA [Neisseria meningitidis G2136]
 gi|325203202|gb|ADY98655.1| modification methylase HphIA [Neisseria meningitidis M01-240355]
          Length = 332

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|296503162|ref|YP_003664862.1| type II restriction-modification system methylation subunit
          [Bacillus thuringiensis BMB171]
 gi|296324214|gb|ADH07142.1| Type II restriction-modification system methylation subunit
          [Bacillus thuringiensis BMB171]
          Length = 251

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +    +    C    EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWAGINTAAFC----EIEEFNQKVLRKNYPNIPIFPDLYKLTK 56

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          Q       D+    V+ AG+PCQ  S AG
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESMAG 85


>gi|87310990|ref|ZP_01093115.1| DNA-cytosine methyltransferase [Blastopirellula marina DSM 3645]
 gi|87286280|gb|EAQ78189.1| DNA-cytosine methyltransferase [Blastopirellula marina DSM 3645]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQD 63
          + F GIG +RL LE+       E  F+++I+    + Y+A+F        GD+ ++    
Sbjct: 11 EFFAGIGLVRLGLERA----GWEVRFANDIDAAKHRQYEAHFGADEAFALGDVHQLDAAA 66

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IPD  +  A FPC   S AG
Sbjct: 67 IPDVTLATASFPCTDLSLAG 86


>gi|306817606|ref|ZP_07451349.1| modification methylase Eco47II [Mobiluncus mulieris ATCC 35239]
 gi|307699879|ref|ZP_07636930.1| DNA binding domain protein, excisionase family [Mobiluncus mulieris
           FB024-16]
 gi|304649648|gb|EFM46930.1| modification methylase Eco47II [Mobiluncus mulieris ATCC 35239]
 gi|307614917|gb|EFN94135.1| DNA binding domain protein, excisionase family [Mobiluncus mulieris
           FB024-16]
          Length = 424

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG  L LE   F H        SE++  +V T + N PN  +  GD+A +  + 
Sbjct: 81  DLFAGAGGTALGLENAGFRH-----VLLSELDKDAVATLRLNRPNWNVSAGDVASLDFRA 135

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
                D++  GFPCQ FS AG
Sbjct: 136 FAGKVDLVEGGFPCQAFSYAG 156


>gi|269976186|ref|ZP_06183182.1| modification methylase Eco47II [Mobiluncus mulieris 28-1]
 gi|269935515|gb|EEZ92053.1| modification methylase Eco47II [Mobiluncus mulieris 28-1]
          Length = 424

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG  L LE   F H        SE++  +V T + N PN  +  GD+A +  + 
Sbjct: 81  DLFAGAGGTALGLENAGFRH-----VLLSELDKDAVATLRLNRPNWNVSAGDVASLDFRA 135

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
                D++  GFPCQ FS AG
Sbjct: 136 FAGKVDLVEGGFPCQAFSYAG 156


>gi|227876656|ref|ZP_03994765.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842553|gb|EEJ52753.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 424

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG  L LE   F H        SE++  +V T + N PN  +  GD+A +  + 
Sbjct: 81  DLFAGAGGTALGLENAGFRH-----VLLSELDKDAVATLRLNRPNWNVSAGDVASLDFRA 135

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
                D++  GFPCQ FS AG
Sbjct: 136 FAGKVDLVEGGFPCQAFSYAG 156


>gi|304411687|ref|ZP_07393299.1| DNA-cytosine methyltransferase [Shewanella baltica OS183]
 gi|307306261|ref|ZP_07586006.1| DNA-cytosine methyltransferase [Shewanella baltica BA175]
 gi|304349875|gb|EFM14281.1| DNA-cytosine methyltransferase [Shewanella baltica OS183]
 gi|306911134|gb|EFN41561.1| DNA-cytosine methyltransferase [Shewanella baltica BA175]
          Length = 371

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 20/100 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIF---GDI 56
           + I DLF G GG+ L   +      + C    + E+NP +  TY+ NF   L+    GDI
Sbjct: 26  VSIVDLFSGCGGLTLGALEAARKHQLTCNIKLAVELNPEAANTYEENFSENLLNLHKGDI 85

Query: 57  AKIKTQDIPDH---------------DVLLAGFPCQPFSQ 81
           ++I T    D+               DVLLAG PCQ  S+
Sbjct: 86  SEIITNYPGDNISEIEEKVRFQNNNIDVLLAGPPCQGHSR 125


>gi|212710423|ref|ZP_03318551.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens
          DSM 30120]
 gi|212686843|gb|EEB46371.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens
          DSM 30120]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +I   F G GG+ L  EQ  FN       +++E +     TY+ N P+T L    I  I 
Sbjct: 4  RIVSFFAGAGGLDLGFEQAGFN-----VIWANEFDKDIWATYKKNHPHTELDQRSITNIT 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + ++P+ D ++ G PCQ +S+AG
Sbjct: 59 SDEVPECDGIIGGPPCQSWSEAG 81


>gi|145629891|ref|ZP_01785682.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          22.1-21]
 gi|144977718|gb|EDJ87668.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          22.1-21]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 15 SEIEPFPCAVLTYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSIAG 69


>gi|148827577|ref|YP_001292330.1| hypothetical protein CGSHiGG_05020 [Haemophilus influenzae
          PittGG]
 gi|319775697|ref|YP_004138185.1| Cytosine-specific methyltransferase (pseudogene) [Haemophilus
          influenzae F3047]
 gi|319896763|ref|YP_004134957.1| cytosine-specific methyltransferase [Haemophilus influenzae
          F3031]
 gi|148718819|gb|ABQ99946.1| hypothetical protein CGSHiGG_05020 [Haemophilus influenzae
          PittGG]
 gi|317432266|emb|CBY80618.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3031]
 gi|317450288|emb|CBY86504.1| Cytosine-specific methyltransferase (pseudogene) [Haemophilus
          influenzae F3047]
          Length = 424

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++PN    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 28 SEIEPFPCAVLTYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSIAG 82


>gi|265751237|ref|ZP_06087300.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270294602|ref|ZP_06200804.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238133|gb|EEZ23583.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270276069|gb|EFA21929.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 335

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+ L   +          F ++I P    T++ANFP   LI GDI  I 
Sbjct: 1  MELISLFSGAGGLDLGFHKAGFRTVTANEFDAKICP----TFRANFPEVNLIEGDIRDIP 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
          + + PD+   ++ G PCQ +S+AG
Sbjct: 57 SCEFPDNITGIIGGPPCQSWSEAG 80


>gi|9632187|ref|NP_049039.1| hypothetical protein PBCV1_A683L [Paramecium bursaria Chlorella
          virus 1]
 gi|2447129|gb|AAC96987.1| nonfunctional M.CviAV cytosine DNA methyltransferase [Paramecium
          bursaria Chlorella virus 1]
          Length = 367

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFS-SEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +  +LF GI GI   L      R +    +  EIN  + K  +  F +  +F D+ K  
Sbjct: 3  FRTLELFAGIAGISHGL------RGISTPVAFVEINEDAQKFLKTKFSDASVFNDVTKFT 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D P D D++ AGFPC  FS AG
Sbjct: 57 KSDFPEDIDMITAGFPCTGFSIAG 80


>gi|289167263|ref|YP_003445530.1| type II DNA modification enzyme (methyltransferase
          cytosine-specific) [Streptococcus mitis B6]
 gi|288906828|emb|CBJ21662.1| type II DNA modification enzyme (methyltransferase
          cytosine-specific) [Streptococcus mitis B6]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-----FNHRN-VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T     F  RN     F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPGVTMIE 60

Query: 54 GDIAKI-----KTQDIPDH--DVLLAGFPCQPFSQAG 83
           DIA I     K++ I     D+++ G PCQ FS  G
Sbjct: 61 EDIANIDEHFLKSKGISSKRVDLVIGGPPCQSFSTVG 97


>gi|169829195|ref|YP_001699353.1| modification methylase SPRI [Lysinibacillus sphaericus C3-41]
 gi|168993683|gb|ACA41223.1| Modification methylase SPRI [Lysinibacillus sphaericus C3-41]
          Length = 418

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          ++  D F GIGG RL +EQ  +     C    E + ++ K+Y+A  N        DI  +
Sbjct: 1  MQFLDFFAGIGGFRLGMEQAGH----TCAGYVEWDKFARKSYEAIHNTEGEWTAHDITTV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 SDEEFSKFRGTVDIICGGFPCQAFSVAG 84


>gi|547931|sp|P36216|MTC1_PBCVI RecName: Full=Modification methylase CviJI; Short=M.CviJI;
          AltName: Full=Cytosine-specific methyltransferase CviJI
 gi|323315|gb|AAA88826.1| cytosine methyltransferase [Paramecium bursaria Chlorella virus
          IL3A]
 gi|483782|gb|AAC55063.1| cytosine methyltransferase [Chlorella virus]
          Length = 367

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFS-SEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +  +LF GI GI   L      R +    +  EIN  + K  +  F +  +F D+ K  
Sbjct: 3  FRTLELFAGIAGISHGL------RGISTPVAFVEINEDAQKFLKTKFSDASVFNDVTKFT 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D P D D++ AGFPC  FS AG
Sbjct: 57 KSDFPEDIDMITAGFPCTGFSIAG 80


>gi|227431785|ref|ZP_03913812.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
 gi|227352468|gb|EEJ42667.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
          Length = 448

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LE++  H  V      EI+ ++ ++YQA  N        DI K+
Sbjct: 1  MKFLDLFSGIGGFRLGLERS-GHTPVGYV---EIDKFARQSYQAMYNTDGEWTAEDINKV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 TDEEWRKFNGTVELIAGGFPCQSFSIAG 84


>gi|228962260|ref|ZP_04123693.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797429|gb|EEM44609.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 180

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   DLF GIG  R+ +E+   H+   C    E N  +  +Y+A  +        DI  +
Sbjct: 3  LTFIDLFAGIGMFRIGMEKA-GHK---CIGWVEWNKPARTSYEAMHDTKGEWTENDIRNV 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              IP  DV  AGFPCQ  S+ G
Sbjct: 59 TGTGIPAADVWCAGFPCQDISKNG 82


>gi|304372874|ref|YP_003856083.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309065|gb|ADM21545.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 413

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 21/96 (21%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG+   L         E   S EI P +V+TY  NF N     ++  I+T+
Sbjct: 93  KFIDLFSGAGGLSCGLVMA----GFEPIASVEIMPDAVETYVYNFQNRKKKEEL--IETR 146

Query: 63  DI---------------PDHDVLLAGFPCQPFSQAG 83
           DI                D D+++ GFPCQ FS AG
Sbjct: 147 DIRDVKVKEELYNKFKDTDIDLIVGGFPCQGFSMAG 182


>gi|330985029|gb|EGH83132.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 422

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIK 60
           +  + F G G  R  L   +     +C F+++ +P   + Y+ N+     L+  DI K+ 
Sbjct: 33  RFYEFFAGGGMARAGLGDGW-----DCLFANDFDPMKGRAYRDNWGGGLDLMVEDINKLT 87

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
           T+ +PD  D++ A FPCQ  S AG
Sbjct: 88  TEQLPDQADLVWASFPCQDLSLAG 111


>gi|323650463|gb|ADX97312.1| M.FspI [Fischerella muscicola SAG 1427-1]
          Length = 385

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+ DLF G GG    L   F+    E   + +++   + TY+ N+PNT +I  DI KI  
Sbjct: 4  KVIDLFAGAGG----LTTGFHMAGFESLCAIDVDAKPLATYKHNYPNTKIIHQDIRKINP 59

Query: 62 QDI--------PDHDVLLAGFPCQPFSQ 81
           D+         +   L+ G PCQ FS+
Sbjct: 60 SDLRLALGLQREELTALIGGPPCQGFSR 87


>gi|325979448|ref|YP_004289164.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|325179376|emb|CBZ49420.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 333

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  +LF G GG+ L +E+       E     E +  + +T + N PN  +I  D+A I 
Sbjct: 1  MKSIELFAGAGGLALGIEKA----GFETIGLIEFDSAAAETLKYNRPNWNVIHDDVANIS 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
            D+ D+        D+L  G PCQ FS AG
Sbjct: 57 KLDLEDYFSIRKGELDLLSGGAPCQSFSYAG 87


>gi|116492328|ref|YP_804063.1| site-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102478|gb|ABJ67621.1| Site-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTL-IFGD 55
          LK+ +LF G+GG R+ LE   N    +  +S++  P      + + Y  +FPN+  I  +
Sbjct: 5  LKVLELFAGVGGFRVGLEHA-NASLYKTLWSNQWEPGKKSQDAFEVYNYHFPNSENINEN 63

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I++I  +     + D+++ GFPCQ +S A
Sbjct: 64 ISEISNEKFKTMNADLIVGGFPCQDYSVA 92


>gi|283796860|ref|ZP_06346013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075266|gb|EFE12630.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 547

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG  L     F  R +   ++SEI P+ +     NFP     GDI K+  
Sbjct: 5  ITMGSLFSGSGGFEL-AGSIFGIRPI---WASEIEPFPILVTTKNFPEMKHLGDINKLNG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+    ++  G PCQ  S AG
Sbjct: 61 ADLEPVTIIAGGSPCQDMSIAG 82


>gi|332704951|ref|ZP_08425037.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
 gi|332356303|gb|EGJ35757.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
          Length = 360

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+ L     F+    +   + EI+  +V TY+ NFP+T +I  D+  I     
Sbjct: 9  DLFAGAGGLSLG----FHMAGWQITTAIEIDKSAVSTYRENFPSTNVIRSDVRAIDFTQF 64

Query: 65 PDHDVLLAGFPCQPFS 80
             D+++   PCQPFS
Sbjct: 65 QGIDLVVGSPPCQPFS 80


>gi|291539796|emb|CBL12907.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 107

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 12/83 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCG GG+ L LEQ+    N+      EIN  + +TY  N    ++  DI  I   +I 
Sbjct: 12 DLFCGAGGLSLGLEQS----NITVPLGVEINAIAAQTYTNNLNGNVLQDDIRNITGHEIL 67

Query: 66 DH-------DVLLAGF-PCQPFS 80
          +          LLAG  PCQ FS
Sbjct: 68 EQLNLQVGELFLLAGCPPCQTFS 90


>gi|209524941|ref|ZP_03273486.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494590|gb|EDZ94900.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 18/88 (20%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDI 56
           DLF GIGG R+ LE    +   +C   SEI   S++ Y+ NF        PN    GD+
Sbjct: 18 VDLFSGIGGFRIALE----NWGGKCLGYSEIAANSIQVYKQNFIRDANLDEPN---LGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +    +P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKLPFTVDLITGGVPCQPWSIAG 96


>gi|314055145|ref|YP_004063483.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
          virus 2]
 gi|313575036|emb|CBI70049.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
          virus 2]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP 65
          LF G GG  L +     +  ++    SE+     +T++ NF N+ LI GDI KI  +D  
Sbjct: 9  LFSGCGGDTLGM----TNAGIDVVAYSELKTKFQETHELNFKNSKLIGGDINKITDEDFE 64

Query: 66 DH----DVLLAGFPCQPFSQAG 83
                D++  GFPCQ FS AG
Sbjct: 65 KLSGKIDIIFGGFPCQSFSNAG 86


>gi|312902257|ref|ZP_07761465.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|283466064|emb|CBG92839.1| hypothetical protein [Enterococcus casseliflavus]
 gi|310634316|gb|EFQ17599.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 470

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 4   ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           + + F G GG+ L LE+  FN          EI+  +  T + N PN  +I GDI  I  
Sbjct: 137 LVETFAGAGGLSLGLEKAGFNS-----VADIEIDSTACSTLKLNRPNWNVIEGDINTIAQ 191

Query: 62  QDIPDH---------DVLLAGFPCQPFSQAG 83
             I +H         DVL  G+PCQ FS AG
Sbjct: 192 NGIFNHEQFTFRGELDVLSGGYPCQSFSYAG 222


>gi|2558956|gb|AAC49849.1| Masc1 [Ascobolus immersus]
          Length = 537

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ--- 62
           D FCG GG+ L   Q      +E  ++ ++NP +   Y+ NFPNT  F   A+   Q   
Sbjct: 231 DTFCGGGGVSLGARQA----GLEVKWAFDMNPNAGANYRRNFPNTDFFLAEAEQFIQLSV 286

Query: 63  DIPDH-DVLLAGFPCQPFSQA 82
            I  H D+L    PCQ FS+A
Sbjct: 287 GISQHVDILHLSPPCQTFSRA 307


>gi|224541047|ref|ZP_03681586.1| hypothetical protein CATMIT_00198 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526044|gb|EEF95149.1| hypothetical protein CATMIT_00198 [Catenibacterium mitsuokai DSM
           15897]
          Length = 418

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 21/102 (20%)

Query: 2   LKITDLFCGIGGIRLDL---------EQTFNHRNVECFFSSEINP----------YSVKT 42
           L + +LF G+GG R+ L         ++   +RN +  ++++  P          Y  + 
Sbjct: 3   LTVVELFAGVGGFRVGLNDIKSFDENDKAIENRNWKFVWANQFEPSTKTQPAYNCYCTRF 62

Query: 43  YQANFPNTLIFGDIAKIK--TQDIPDHDVLLAGFPCQPFSQA 82
            + +  NT I  ++A +   T  IP+H +L+ GFPCQ +S A
Sbjct: 63  GEEHTSNTDIQEEVAHLDEDTDYIPNHSLLVGGFPCQDYSVA 104


>gi|257867246|ref|ZP_05646899.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873580|ref|ZP_05653233.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801302|gb|EEV30232.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807744|gb|EEV36566.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
          Length = 470

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 4   ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           + + F G GG+ L LE+  FN          EI+  +  T + N PN  +I GDI  I  
Sbjct: 137 LVETFAGAGGLSLGLEKAGFNS-----VADIEIDSTACSTLKLNRPNWNVIEGDINTIAQ 191

Query: 62  QDIPDHD---------VLLAGFPCQPFSQAG 83
             I +HD         VL  G+PCQ FS AG
Sbjct: 192 NGIFNHDQFTFRGELDVLSGGYPCQSFSYAG 222


>gi|218895987|ref|YP_002444398.1| modification methylase DdeI [Bacillus cereus G9842]
 gi|218542827|gb|ACK95221.1| modification methylase DdeI [Bacillus cereus G9842]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 9/83 (10%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAK-IK 60
           DLFCG GG+ + LEQ     N E  F+ + +  + K+Y  N P    ++   GDI + + 
Sbjct: 94  DLFCGAGGLSVGLEQY----NFEPIFALDFDLSASKSYLFNRPFLSESSFYNGDIKEFLL 149

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             D+P   V++ G PCQ FS A 
Sbjct: 150 HNDLPKAPVIVGGPPCQGFSNAN 172


>gi|94968156|ref|YP_590204.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550206|gb|ABF40130.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           +L  G GG  L LEQ   NH  +      EIN ++ +T + N PN  ++ GD+       
Sbjct: 47  ELCAGAGGQALGLEQAGINHVAL-----VEINKHACETLRLNRPNWKVVEGDLQTFDPSP 101

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
               D++ AG PC PFS AG
Sbjct: 102 YKGADIVSAGLPCPPFSVAG 121


>gi|79835472|gb|ABB52097.1| Mod [Arthrospira platensis]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
           DLF G+GGI     Q F         S EINP +  T+Q NFPN   F GD+        
Sbjct: 80  DLFSGVGGI----TQGFWQAGFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFNPHQW 135

Query: 65  ------PDHDVLLAGFPCQPFSQAG 83
                 P   +++ G PCQ FS AG
Sbjct: 136 LSKIGSPSVHLVVGGPPCQGFSVAG 160


>gi|269119458|ref|YP_003307635.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268613336|gb|ACZ07704.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M ++ + F GI      L+    +H  V  F   EI+ ++++  +    N    GDI+K+
Sbjct: 1  MPRVVEAFSGIRSQTQALKNLGIDHEVVATF---EIDKWAIEMAKLLHGNVNNLGDISKV 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +++P+HD+    FPCQ  S AG
Sbjct: 58 DPKEVPEHDLFTYTFPCQDISTAG 81


>gi|317127844|ref|YP_004094126.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472792|gb|ADU29395.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          ++ DLF G GGI     + F     +     + NP +V+T+  NF N+  I  DI +IK 
Sbjct: 4  RVIDLFSGCGGI----SEGFRLAGFDILGGLDFNPDAVETFHQNFLNSRAICADIQEIKN 59

Query: 62 QDIP-------DHDVLLAGFPCQPFSQA 82
           +I        D DV++ G PCQ FS A
Sbjct: 60 DEITYMFDLTGDIDVIVGGPPCQGFSSA 87


>gi|290343528|ref|YP_003494895.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
 gi|260160943|emb|CAY39643.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP 65
          LF G GG  L +        V+    SE+     +T++ NF N+ LI GDI KI  +D  
Sbjct: 11 LFSGCGGDTLGMVNA----GVDVVAYSELKTKFQETHELNFKNSKLIGGDINKITDEDFE 66

Query: 66 DH----DVLLAGFPCQPFSQAG 83
                D++  GFPCQ FS AG
Sbjct: 67 KLSGKIDIIFGGFPCQSFSNAG 88


>gi|228958671|ref|ZP_04120388.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228801009|gb|EEM47909.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +         C    EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWAGIDTAAFC----EIEEFNQKVLRKNYPNIPIFPDLYKLTK 56

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          Q       D+    V+ AG+PCQ  S AG
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESMAG 85


>gi|325478716|gb|EGC81827.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 480

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG    L   F    ++  ++SE+ P+ ++  Q N P     GDI  I  
Sbjct: 5  LRLGSLFDGSGG--FPLAAIFCE--IKPIWASEVEPFPIRVTQKNLPQVKHLGDINDIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ  S AG
Sbjct: 61 SGIEPVDIISFGSPCQDLSIAG 82


>gi|283834737|ref|ZP_06354478.1| modification methylase HgiDII [Citrobacter youngae ATCC 29220]
 gi|291068977|gb|EFE07086.1| modification methylase HgiDII [Citrobacter youngae ATCC 29220]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+ D FCG GG      + F     +     + +  +  +Y+ANFPNT  I  DI  ++
Sbjct: 1  MKVIDFFCGCGGA----SKGFELAGFDIALGIDFDKSAADSYKANFPNTAFINSDIRNVR 56

Query: 61 TQDI----PDHD----VLLAGFPCQPFS 80
           +DI    PD      +  A  PCQPFS
Sbjct: 57 VRDIAEIVPDWKENDLIFCACAPCQPFS 84


>gi|51245886|ref|YP_065770.1| modification methylase [Desulfotalea psychrophila LSv54]
 gi|50876923|emb|CAG36763.1| probable modification methylase [Desulfotalea psychrophila LSv54]
          Length = 360

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 15/97 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQ---TFNHRNVECF-----FSSEINPYSVKTYQANFPN---- 49
           ++ +LFCG GGI L  +     +N+RN E F     ++++ +  + +TY  N  N    
Sbjct: 3  FELAELFCGPGGIALGAQLAGVVYNNRNNESFSIAPSWATDYDEATCRTYALNIHNSNEL 62

Query: 50 ---TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             T++  D+ ++  + +     L  GFPC  FS  G
Sbjct: 63 DLDTVVCQDVRELDIEALRPRQALAFGFPCNDFSSVG 99


>gi|228469860|ref|ZP_04054799.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
 gi|228308495|gb|EEK17283.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
          Length = 359

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L     F+        ++E +     T++ NFP+  L+ GDI KI 
Sbjct: 3  MTLISLFSGAGGMDLG----FHKAGFTTILANEYDKTICPTFKHNFPDVPLLEGDIRKIP 58

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +  P H D ++ G PCQ +S+AG
Sbjct: 59 ERLFPRHIDGIIGGPPCQSWSEAG 82


>gi|260910178|ref|ZP_05916855.1| site-specific DNA-methyltransferase [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260635682|gb|EEX53695.1| site-specific DNA-methyltransferase [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 403

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIG   L        RN+   F  EIN +     +  +PN++ + DI     ++   
Sbjct: 11 LFSGIGAPEL-AATWMGWRNL---FHCEINDFCRTILRYWYPNSVSYEDIKTTNFEEWRG 66

Query: 67 H-DVLLAGFPCQPFSQAG 83
            DVL  GFPCQPFS AG
Sbjct: 67 RVDVLTGGFPCQPFSAAG 84


>gi|75906326|ref|YP_320622.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75700051|gb|ABA19727.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 431

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 19/90 (21%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------------ 53
           DLF G GG+ L  EQ       +   + EI+P     ++ NFP   +             
Sbjct: 21  DLFAGAGGMTLGFEQA----GFDVLAAVEIDPIHCAVHEYNFPFCSVLCKSVEETTGKEI 76

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            D +KI  QDI   DV++ G PCQ FS  G
Sbjct: 77  RDRSKINNQDI---DVIICGSPCQGFSLMG 103


>gi|302348094|ref|YP_003815732.1| Cytosine-specific DNA methylase [Acidilobus saccharovorans
          345-15]
 gi|302328506|gb|ADL18701.1| Cytosine-specific DNA methylase [Acidilobus saccharovorans
          345-15]
          Length = 327

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIAKIKT 61
          DLF G GG      + F         + E +P   KTY+ANFP T +      D+++   
Sbjct: 4  DLFSGAGG----FSRGFELAGFNVVAAVENDPPVAKTYKANFPETYLIADDIKDVSEPTI 59

Query: 62 QDIP-----DHDVLLAGFPCQPFS 80
          +D+      D DV++A  PC+PF+
Sbjct: 60 KDVSGYGRGDVDVVIASPPCEPFT 83


>gi|315613695|ref|ZP_07888602.1| modification methylase Sau3AI [Streptococcus sanguinis ATCC
          49296]
 gi|315314386|gb|EFU62431.1| modification methylase Sau3AI [Streptococcus sanguinis ATCC
          49296]
          Length = 421

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLE----QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          +K+ +LF G+GG R+ LE    Q F  +    +  S  +  + + Y  +FPN+    +  
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQLFKTKWANQWEPSRKSQDAFEVYDYHFPNS----ENI 56

Query: 58 KIKTQDIPDH-------DVLLAGFPCQPFSQA 82
           I   DI D        D+++ GFPCQ +S A
Sbjct: 57 NISISDITDEQFSKMDADMIVGGFPCQDYSVA 88


>gi|304387865|ref|ZP_07370039.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|254670653|emb|CBA06706.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha153]
 gi|254672637|emb|CBA06420.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
 gi|261392815|emb|CAX50396.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis 8013]
 gi|304338130|gb|EFM04266.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410190|emb|CBY90526.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134031|gb|EGC56686.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325203903|gb|ADY99356.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F+  N+     F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|121634611|ref|YP_974856.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|4887086|gb|AAD32180.1|AF125564_2 putative site specific DNA methyltransferase [Neisseria
           meningitidis]
 gi|120866317|emb|CAM10058.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|325132026|gb|EGC54724.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325135954|gb|EGC58564.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325137780|gb|EGC60355.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142075|gb|EGC64502.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198036|gb|ADY93492.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325202381|gb|ADY97835.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325207867|gb|ADZ03319.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 411

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F+  N+     F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|16125285|ref|NP_419849.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|221234022|ref|YP_002516458.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
 gi|13422327|gb|AAK23017.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|220963194|gb|ACL94550.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
          Length = 335

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--FGDIAKIKT 61
          +  LFCG GG    L+Q F     E   + +    SVK+Y  N P+  +    D+++I  
Sbjct: 3  LLSLFCGAGG----LDQGFEEAGFEVGLALDRKLDSVKSYNLNRPSAAVARVKDLSEITI 58

Query: 62 QDIPD-------HDVLLAGFPCQPFSQA 82
          QDI D          ++ G PCQ FSQA
Sbjct: 59 QDIDDLYGKEFSPSGVIGGPPCQSFSQA 86


>gi|307704025|ref|ZP_07640957.1| cytosine methyl transferase [Streptococcus mitis SK597]
 gi|307622416|gb|EFO01421.1| cytosine methyl transferase [Streptococcus mitis SK597]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLFCGIGG+   ++Q      +      +I+  S   Y+ N     IF D+ +I+ 
Sbjct: 3  INAVDLFCGIGGLTYGIQQA----GINVVAGYDIDEKSKFAYEYNNGAKFIFKDVREIED 58

Query: 62 QDI-----PDHD--VLLAGFPCQPFS 80
           +I     PD D  VL+   PCQPFS
Sbjct: 59 NEILGLYPPDTDIKVLIGCAPCQPFS 84


>gi|293371778|ref|ZP_06618188.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292633230|gb|EFF51801.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L     F+    +   ++E +     T++ANF +T LI GDI  I 
Sbjct: 1  MNLISLFSGAGGLDL----GFHKAGFKVVTANEFDAKICPTFRANFSDTNLIEGDIRDIP 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
          + + PD+   ++ G PCQ +S+AG
Sbjct: 57 SSEFPDNIAGIIGGPPCQSWSEAG 80


>gi|293365989|ref|ZP_06612691.1| modification methylase Sau3AI [Streptococcus oralis ATCC 35037]
 gi|307702387|ref|ZP_07639344.1| DNA-cytosine methyltransferase [Streptococcus oralis ATCC 35037]
 gi|291315532|gb|EFE55983.1| modification methylase Sau3AI [Streptococcus oralis ATCC 35037]
 gi|307624064|gb|EFO03044.1| DNA-cytosine methyltransferase [Streptococcus oralis ATCC 35037]
          Length = 421

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLE----QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          +K+ +LF G+GG R+ LE    Q F  +    +  S  +  + + Y  +FPN+    +  
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQLFKTKWANQWEPSRKSQDAFEVYDYHFPNS----ENI 56

Query: 58 KIKTQDIPDH-------DVLLAGFPCQPFSQA 82
           I   DI D        D+++ GFPCQ +S A
Sbjct: 57 NISISDITDEQFSKMDADMIVGGFPCQDYSVA 88


>gi|239918514|ref|YP_002958072.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|281415284|ref|ZP_06247026.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|239839721|gb|ACS31518.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++   F GIGG  L  E       +   +  EI  +  +  + ++P      +I  +  
Sbjct: 13 LRMASFFTGIGGFDLGFENA----GIRTVYQCEIKDFCNQVLEYHWPEIPRGTNIELVNP 68

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIP+ D+   GFPCQ  S A
Sbjct: 69 DDIPEADIWTGGFPCQDISLA 89


>gi|321312120|ref|YP_004204407.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
 gi|320018394|gb|ADV93380.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
          Length = 380

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI- 59
           K   LF G GG+ +     F    V+  +++EI+  +  TY+ N P+T L  GDI+++ 
Sbjct: 5  FKAISLFSGAGGMDIG----FQKAGVDVVWANEIDKDACNTYELNNPDTYLRRGDISEVY 60

Query: 60 -KTQDIPDHDVLLAGFPCQPFSQAG 83
           + ++    D+L  G PCQ FS AG
Sbjct: 61 EELKNYNGIDLLFGGPPCQGFSVAG 85


>gi|119493084|ref|ZP_01624009.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
 gi|119452829|gb|EAW34004.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
          Length = 441

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK----- 58
            DLF G GG+ L  EQ       +   + EI+P     +Q NFP   +F  DI+K     
Sbjct: 17  VDLFAGSGGMTLGFEQA----GFDVLAAVEIDPIHCAVHQYNFPLWSVFCEDISKLSSDK 72

Query: 59  ------IKTQDIPDHDVLLAGFPCQPFSQAG 83
                 IK QDI   DV+  G PCQ FS  G
Sbjct: 73  IRIYSSIKNQDI---DVVFGGPPCQGFSLMG 100


>gi|163938820|ref|YP_001643704.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
 gi|163861017|gb|ABY42076.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
          Length = 350

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+  +F GIGG  L  +Q       E  +++E++  +  TY+  +    L   D+ ++  
Sbjct: 6  KLGSMFAGIGGTCLGFQQA----GAEIVWANEVDRNASITYRHFWKGEYLQEADVTEVDK 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D+L+ GFPCQ FS AG
Sbjct: 62 TTISQLDILIGGFPCQAFSIAG 83


>gi|284989342|ref|YP_003407896.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
 gi|284062587|gb|ADB73525.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK----- 60
           DLF G GG+ L LEQ          FS++ +P +V+T+  +F    +  D+A        
Sbjct: 52  DLFSGAGGMSLGLEQA----GFRVVFSADHDPEAVETHAHHFGGMSVDWDLADADAVERV 107

Query: 61  --TQDIPDHDVLLAGFPCQPFSQAG 83
             T      ++L  G PCQPFS+AG
Sbjct: 108 AATLRAVGVELLAGGPPCQPFSKAG 132


>gi|322499679|emb|CBZ34753.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 840

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 44  QANFPNT------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  FP+        + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 415 EGGFPDATARSVPFLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460


>gi|325678040|ref|ZP_08157677.1| putative modification methylase BspRI [Ruminococcus albus 8]
 gi|324110257|gb|EGC04436.1| putative modification methylase BspRI [Ruminococcus albus 8]
          Length = 358

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + + DLFCG GG      + F     +     +I   ++ TY  NFPN + I  DI+ +K
Sbjct: 1  MNVFDLFCGCGG----FSKGFQSAGFDIKLGIDIWQDAITTYNHNFPNAVTITEDISNLK 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
           +D+           DV++ G PCQ FS +G
Sbjct: 57 GEDLLSRANLTADEVDVIIGGPPCQGFSLSG 87


>gi|146088814|ref|XP_001466154.1| modification methylase-like protein [Leishmania infantum JPCM5]
 gi|134070256|emb|CAM68593.1| modification methylase-like protein [Leishmania infantum JPCM5]
          Length = 840

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 44  QANFPNT------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  FP+        + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 415 EGGFPDATARSVPFLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460


>gi|157870650|ref|XP_001683875.1| modification methylase-like protein [Leishmania major]
 gi|68126942|emb|CAJ05189.1| modification methylase-like protein [Leishmania major strain
           Friedlin]
          Length = 840

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 44  QANFPNT------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  FP+        + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 415 EGGFPDATARSVPFLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460


>gi|126465817|ref|YP_001040926.1| DNA-cytosine methyltransferase [Staphylothermus marinus F1]
 gi|126014640|gb|ABN70018.1| DNA-cytosine methyltransferase [Staphylothermus marinus F1]
          Length = 323

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          K  DLFCG GG       T   R+V         P + +TY+ NFP+++ I  DI +I+ 
Sbjct: 6  KFIDLFCGAGGFAEGFILTNRFRSV--LGIDNFRP-AAQTYKINFPDSIVIMEDIKRIRN 62

Query: 62 QDI-----PDH-DVLLAGFPCQPFSQA 82
           D+     P+  DV++   PC+PF+ A
Sbjct: 63 DDLIEIIDPEEIDVVIGSPPCEPFTGA 89


>gi|206972340|ref|ZP_03233286.1| C-5 cytosine-specific DNA methylase [Bacillus cereus AH1134]
 gi|206732665|gb|EDZ49841.1| C-5 cytosine-specific DNA methylase [Bacillus cereus AH1134]
          Length = 503

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+I  LF G G   L     F +   +  F+ E +  +VKTY+ N    ++  DI     
Sbjct: 182 LQIVSLFSGSGVFDLG----FKNEGFDIIFAIEKDEDAVKTYRHNLGEHVVCHDITTYPK 237

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
           +DIP+  +++ G PCQ FS +
Sbjct: 238 KDIPNAPIIIGGPPCQGFSNS 258


>gi|89097277|ref|ZP_01170167.1| hypothetical protein B14911_16900 [Bacillus sp. NRRL B-14911]
 gi|89088100|gb|EAR67211.1| hypothetical protein B14911_16900 [Bacillus sp. NRRL B-14911]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTL-IFGD 55
          L + +LF G+GG R+ LE+  +    +  ++++  P      +   Y ++FP+++    D
Sbjct: 5  LNVVELFAGVGGFRVGLERA-DKNFFDTVWANQWEPSKKAQDAFNCYNSHFPSSVNCNDD 63

Query: 56 IAKIKTQDIPDH--DVLLAGFPCQPFSQA 82
          I K+  +   D   D+L+ GFPCQ +S A
Sbjct: 64 IGKVSNKTFEDMNIDLLVGGFPCQDYSVA 92


>gi|221232587|ref|YP_002511741.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
 gi|220675049|emb|CAR69627.1| putative DNA modification methylase [Streptococcus pneumoniae
          ATCC 700669]
          Length = 421

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLE----QTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIF 53
          +K+ +LF G+GG R+ LE    Q F  +    +  S  +  + + Y  +FPN+    +  
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQLFKTKWANQWEPSRKSQDAFEVYDYHFPNSKNINISI 60

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI   +   + D D+++ GFPCQ +S A
Sbjct: 61 SDITDEQFSKM-DADMIVGGFPCQDYSVA 88


>gi|145356149|ref|XP_001422300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582541|gb|ABP00617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 778

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF GIGG+ L LE+  +    +     E + +  +  +  +P+  +  D+A +  
Sbjct: 3  LRVASLFSGIGGLDLGLERAGH----DVVLRVERDAHCRELLRRQYPDGALMDDVAAVMP 58

Query: 62 QDIPDHDVLLAGFPCQPFS 80
          +D+   D+L AGFPC   S
Sbjct: 59 RDLDGVDLLAAGFPCNDCS 77


>gi|145346921|ref|XP_001417930.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578158|gb|ABO96223.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 820

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G+GG+ L L+Q   HR +E     E + +  +   A FP   +  D+A++  
Sbjct: 4  LRVASLFSGVGGLDLGLQQA-GHR-IELMV--ERDAHCKQVLSARFPGVALLNDVAEVLP 59

Query: 62 QDIPDHDVLLAGFPCQPFS 80
            + + D ++AGFPC   S
Sbjct: 60 FMLENIDCVVAGFPCNDCS 78


>gi|50841408|gb|AAT84068.1| 5-cytosine DNA methyltransferase [Entamoeba invadens]
          Length = 324

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+I + F GIGG+R  LE++  H N   F + +IN  +   Y+ N+   ++  ++  +  
Sbjct: 9  LRILEFFSGIGGLRASLERSKVHTNT-TFCAIDINEIANTIYEGNYKEKVVVKNLDTVSV 67

Query: 62 QDIPDH--DVLLAGFPCQPFSQA 82
          + I +   +V     PCQP++ +
Sbjct: 68 EWIEEKRANVWFMSPPCQPYNNS 90


>gi|317127846|ref|YP_004094128.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472794|gb|ADU29397.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 564

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
          LK+ DLF G GG+    EQT    + E   + E N  + KT++ N  +      F DI  
Sbjct: 4  LKVIDLFAGAGGLSAGFEQT---DSFEVIAAIENNKNARKTFRRNHKSLRKEFFFRDIKD 60

Query: 59 IKTQDIPDH-----DVLLAGFPCQPFSQA 82
          +K + I +      D+++ G PCQ FS A
Sbjct: 61 LKYEQINELKKIGIDIVIGGPPCQGFSNA 89


>gi|254412384|ref|ZP_05026158.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196180694|gb|EDX75684.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 17/96 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPNTLIFGD 55
          ML    LF G GG+ + + Q       E     EI+PY  KT ++     N    LI  D
Sbjct: 1  MLSALSLFSGAGGMDIGVRQA----GFEILADIEIDPYCCKTIRSAMDRENLRTLLIEKD 56

Query: 56 IAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
          I ++    +         D D+L  G PCQ FSQAG
Sbjct: 57 IKQVDPSHLIRELTIQPGDLDLLFGGSPCQSFSQAG 92


>gi|157825194|ref|YP_001492914.1| site-specific DNA methylase [Rickettsia akari str. Hartford]
 gi|157799152|gb|ABV74406.1| Site-specific DNA methylase [Rickettsia akari str. Hartford]
          Length = 93

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          FSS+I     + Y+ N  + L +G+I +I    IP HD+L AGFP Q FS
Sbjct: 3  FSSDIGKDVQEAYKRNLGDKL-YGNITEISAHKIPKHDILCAGFPYQSFS 51


>gi|156741374|ref|YP_001431503.1| DNA-cytosine methyltransferase [Roseiflexus castenholzii DSM
          13941]
 gi|156232702|gb|ABU57485.1| DNA-cytosine methyltransferase [Roseiflexus castenholzii DSM
          13941]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   + F G G  R+ L   +      C F+++I+P     Y+ NF     L+  DI ++
Sbjct: 4  LTFYEFFAGGGLARIGLGPQWT-----CLFANDIDPKKADVYRRNFSGAPELVVADIHRV 58

Query: 60 KTQDIPDHDVLL-AGFPCQPFSQAG 83
           T  +P   +L  A FPCQ  S AG
Sbjct: 59 TTDMLPGRALLAWASFPCQDLSLAG 83


>gi|313678719|ref|YP_004056459.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950602|gb|ADR25197.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 324

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG+ L     F   N +   + E    +V TY  NF   ++  DI   + ++
Sbjct: 6  IIDLFAGAGGLTLG----FTQNNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRN 61

Query: 64 IPDH------DVLLAGFPCQPFSQAG 83
            +       D+++ GFPCQ FS AG
Sbjct: 62 ELESNWKNKTDLVIGGFPCQGFSLAG 87


>gi|157953197|ref|YP_001498088.1| hypothetical protein AR158_C006R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156067845|gb|ABU43552.1| hypothetical protein AR158_C006R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L+   LF G GG    ++       ++    SE++  ++KT+  N P+ +  GD++ I  
Sbjct: 4  LRAISLFAGAGGDTFGMKMA----GIDVVAFSELDIDAIKTHNRNNPDCVALGDVSLIDE 59

Query: 61 ---TQDIPDHDVLLAGFPCQPFSQAG 83
             +  + + D++ AGFPCQ FS AG
Sbjct: 60 TMLSPFVDNVDIIFAGFPCQGFSNAG 85


>gi|86151502|ref|ZP_01069717.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
          260.94]
 gi|85841849|gb|EAQ59096.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
          260.94]
          Length = 187

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDI--AK 58
           KI DLFCG GG     EQ  N + +      + N ++++T++ N P++ +I GD+  A 
Sbjct: 3  FKILDLFCGAGGFSNGFEQNENFKTI---IGVDFNKFALETFKYNHPDSKVICGDLKDAL 59

Query: 59 IKTQDIPDH-----DVLLAGFPCQPFSQAG 83
          +K+  I +      ++++ G PCQ FS  G
Sbjct: 60 VKSYIIDEAQKNGINMIIGGPPCQGFSSKG 89


>gi|78047901|ref|YP_364076.1| putative cytosine-specific DNA methylase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|78036331|emb|CAJ24022.1| putative cytosine-specific DNA methylase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M    + F G G  R  L   +     +C  +++ +P    +Y AN+  + L  GD+A +
Sbjct: 1  MANFYEFFAGGGMARAGLGPDW-----QCLLANDFDPKKAASYAANWGTDHLRVGDVAAL 55

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
           T D+P   D+  A FPCQ  S AG
Sbjct: 56 TTADLPAGADLAWASFPCQDLSLAG 80


>gi|268680630|ref|YP_003305061.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618661|gb|ACZ13026.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 31/113 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTF---------------NHRNV--------ECFFSSEINPY 38
           LK+   F G GG+ L LE  F                H+N         +  F+ +I P 
Sbjct: 4   LKVVSFFSGCGGLDLGLEGDFWVKAKSVKDKTWIKERHKNFVKLAPTAFQTVFACDIKPS 63

Query: 39  SVKTYQANFPNTLIFG--------DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + K ++  F    +F           AK  T   P+ DV+  GFPCQ FS AG
Sbjct: 64  AKKAWEYYFQRDNVFHLESIVELVKKAKEGTFTFPNADVVTGGFPCQDFSVAG 116


>gi|314998281|ref|ZP_07863147.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a01]
 gi|313587745|gb|EFR66590.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a01]
          Length = 171

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|198430517|ref|XP_002128135.1| PREDICTED: similar to DNA methyltransferase 2 [Ciona
          intestinalis]
          Length = 343

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          LK+ +L+ GIGG+   L    N +N E   S +I+P +   Y+ NFP T  +   I    
Sbjct: 5  LKVLELYSGIGGMHYALLGA-NLKNCEVVCSVDISPAASLVYKHNFPGTKHWERSIEGFS 63

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           +D  +   + L+   PCQPF++ G
Sbjct: 64 AKDFDNMGFNTLMMSPPCQPFTRVG 88


>gi|309790027|ref|ZP_07684601.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
 gi|308227882|gb|EFO81536.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 438

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 15/87 (17%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEIN--PYSVKTYQANFPNTLIFGDIAKIK--- 60
           DLFCG GG+ L  E          F ++ I+  P +V T++ NF +  I  DI +I    
Sbjct: 61  DLFCGAGGMSLGFESG------NFFVAAGIDAEPAAVMTHKYNFLSKGIACDIREISDPR 114

Query: 61  ----TQDIPDHDVLLAGFPCQPFSQAG 83
               T  +P  DV++ G PCQ F++ G
Sbjct: 115 ELLATLGLPRVDVIIGGPPCQGFARIG 141


>gi|188588765|ref|YP_001921868.1| DNA-cytosine methyltransferase [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188499046|gb|ACD52182.1| DNA-cytosine methyltransferase [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 304

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG  L ++        E   + +    ++K Y  NF + +   D+  I  
Sbjct: 1  MKVIDLFCGCGGFSLGMQNA----GFEIVAAYDNWEPAIKVYDENFNHPIYNIDLQNISL 56

Query: 62 QDIP-----DHDVLLAGFPCQPFSQAG 83
          ++I      + DV++ G PCQ +S AG
Sbjct: 57 EEIESMKKLNPDVIIGGPPCQDYSSAG 83


>gi|161869767|ref|YP_001598934.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161595320|gb|ABX72980.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP-------NTLI 52
           +++  +F GIG +    EQ F+  N+     F+ +I+PY  K+Y  N+        N + 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 53  FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D +K + Q     D+L+ G PCQ FS  G
Sbjct: 94  QFDASKFRNQV----DILVGGSPCQAFSMVG 120


>gi|239624756|ref|ZP_04667787.1| DNA-cytosine methyltransferase [Clostridiales bacterium
          1_7_47_FAA]
 gi|239521142|gb|EEQ61008.1| DNA-cytosine methyltransferase [Clostridiales bacterium
          1_7_47FAA]
          Length = 420

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + +LF G+GG RL L+ +      E  + S+  P   K + A+      +GDI +   QD
Sbjct: 5  VCELFAGVGGFRLGLQHS--SPQWETVWFSQWEPGRKKQW-AHDCYVKHWGDIDERTGQD 61

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I        PDH +L+ GFPCQ +S A 
Sbjct: 62 IASVDKTAIPDHTLLVGGFPCQNYSVAA 89


>gi|221120982|ref|XP_002166687.1| PREDICTED: similar to TRNA aspartic acid methyltransferase 1
          [Hydra magnipapillata]
          Length = 388

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          LK+ + + GIGG+   L       +VE  F  EIN  +   Y+ NFP  TL+  +I  + 
Sbjct: 5  LKVLEFYSGIGGVHYALTYAGVSVHVEAAF--EINTSANSVYRHNFPQTTLLQKNIEGLN 62

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +D+   + DV     PCQP+++ G
Sbjct: 63 LEDLEHFNADVWTMSPPCQPYTRLG 87


>gi|218767941|ref|YP_002342453.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|6900408|emb|CAB72018.1| putative cytosine-specific methyltransferase [Neisseria
           meningitidis]
 gi|121051949|emb|CAM08255.1| putative modification methylase [Neisseria meningitidis Z2491]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP-------NTLI 52
           +++  +F GIG +    EQ F+  N+     F+ +I+PY  K+Y  N+        N + 
Sbjct: 38  IRLATVFSGIGAV----EQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 53  FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D +K + Q     D+L+ G PCQ FS  G
Sbjct: 94  QFDASKFRNQV----DILVGGSPCQAFSMVG 120


>gi|314994131|ref|ZP_07859441.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|313591449|gb|EFR70294.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
          Length = 130

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|86747598|ref|YP_484094.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86570626|gb|ABD05183.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 390

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGG+ L L +  +    E    SEI   +    +  F      GD+A + +
Sbjct: 1  MKIAGLFAGIGGLELGLHRAGH----ETVILSEIWQPAGAVLEHRFKGAPNVGDVATLTS 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
            +P   +++ AGFPCQ  SQAG
Sbjct: 57 --LPSEVELMTAGFPCQDLSQAG 77


>gi|323487868|ref|ZP_08093126.1| type II modification methyltransferase [Planococcus donghaensis
          MPA1U2]
 gi|323398602|gb|EGA91390.1| type II modification methyltransferase [Planococcus donghaensis
          MPA1U2]
          Length = 420

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTLIFG-- 54
          L++ +LF G+GG RL L++  NH   +  + ++  P      +   Y  NF +T I    
Sbjct: 7  LRVIELFAGVGGFRLGLQKA-NHELFDIVWGNQWEPSRKAQDAFDCYSRNF-DTGIHSNE 64

Query: 55 DIAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
          DI K+      D   D+L+ GFPCQ +S A
Sbjct: 65 DITKVSDDTFHDLRADLLVGGFPCQDYSVA 94


>gi|53728781|ref|ZP_00135132.2| COG0270: Site-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 354

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGD----IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+       ++P+    GD    + KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 28 SEIEPFPCAVLAYHYPDIPNLGDMTALVPKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|314940406|ref|ZP_07847565.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a04]
 gi|313640387|gb|EFS04967.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a04]
          Length = 130

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|317132209|ref|YP_004091523.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470188|gb|ADU26792.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 9/80 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAKIKT 61
           DLFCG GG+ + LEQ    R V    + + +  +V TY+ N P     ++I  DI +I  
Sbjct: 64  DLFCGAGGLSVGLEQE-GFRPVA---AVDKDQSAVLTYRFNRPWLTDGSIIHEDIREIVN 119

Query: 62  QDI-PDHDVLLAGFPCQPFS 80
           QDI P   V++ G PCQ FS
Sbjct: 120 QDIFPHVPVVVGGPPCQGFS 139


>gi|213581465|ref|ZP_03363291.1| DNA cytosine methylase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/20 (85%), Positives = 18/20 (90%)

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P HDVLLAGFPCQPFS AG
Sbjct: 1  MPQHDVLLAGFPCQPFSLAG 20


>gi|157953886|ref|YP_001498777.1| hypothetical protein AR158_C696R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068534|gb|ABU44241.1| hypothetical protein AR158_C696R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L        VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGLRGF-----VEPMAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          +D  +  D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|291618717|ref|YP_003521459.1| HsdRM [Pantoea ananatis LMG 20103]
 gi|291153747|gb|ADD78331.1| HsdRM [Pantoea ananatis LMG 20103]
          Length = 313

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          M  +  LF G GG    +    FN        +++I PY+   Y AN P T  + G +  
Sbjct: 1  MPTVVSLFSGCGGSDAGVVNAGFN-----VLMANDILPYARDVYLANHPETDYVLGSVDN 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK    P  D+L+  +PCQ FSQ G
Sbjct: 56 IK--HFPKADLLVGCYPCQGFSQGG 78


>gi|288559285|ref|YP_003422771.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium
          M1]
 gi|288541995|gb|ADC45879.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium
          M1]
          Length = 342

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK-- 60
          + DLFCGIGG      + F     +  F  +I   +++T+Q N  NT  I  D+ ++   
Sbjct: 6  VIDLFCGIGG----FSKGFEMAGFDVLFGIDIWDIAIETFQHNHKNTEGILADLTELDDD 61

Query: 61 --TQDIPDHDVLLAGFPCQPFSQAG 83
             Q     DV++AG PCQ FS  G
Sbjct: 62 FFKQYTNKVDVIIAGPPCQGFSMCG 86


>gi|256078707|ref|XP_002575636.1| DNA (cytosine-5)-methyltransferase [Schistosoma mansoni]
 gi|238660878|emb|CAZ31869.1| DNA (cytosine-5)-methyltransferase, putative [Schistosoma
          mansoni]
          Length = 368

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++ +L+ GIGG+ +   E T  H   E   + EIN  +   Y+ NFPNTL    + +  
Sbjct: 1  MRVLELYSGIGGMHIAFKESTVKH---EVVAAVEINGVATDVYKYNFPNTLTLNRVIESF 57

Query: 61 TQDIP---DHDVLLAGFPCQPFSQAG 83
          + D     + +V     PCQPF++ G
Sbjct: 58 SPDYVCSLNANVWSLCPPCQPFTRLG 83


>gi|323350984|ref|ZP_08086641.1| modification methylase HgiDII [Streptococcus sanguinis VMC66]
 gi|322122708|gb|EFX94417.1| modification methylase HgiDII [Streptococcus sanguinis VMC66]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCG+GG+   +++T     +      +I+  S   Y+ N   T I  D+ +I  ++I 
Sbjct: 7  DLFCGVGGLTYGIQKT----GINVIAGYDIDEKSKFAYEYNNDATFILKDVKEIDDREIS 62

Query: 66 -------DHDVLLAGFPCQPFS 80
                 D  VL+   PCQPFS
Sbjct: 63 NLYPKDTDIKVLIGCAPCQPFS 84


>gi|308389149|gb|ADO31469.1| Cytosine-specific methyltransferase NlaX [Neisseria meningitidis
          alpha710]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF GIGG  L  EQ       +  +  EI+  +       FP+   F D+ +    D
Sbjct: 6  VGSLFAGIGGFDLGFEQA----GFQTAWQVEIDEVNRAVLADRFPHARQFADV-RTALPD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +   DV++ GFPCQ  S AG
Sbjct: 61 LWSVDVIVGGFPCQDVSTAG 80


>gi|260583507|ref|ZP_05851255.1| modification methylase HphIA [Granulicatella elegans ATCC 700633]
 gi|260158133|gb|EEW93201.1| modification methylase HphIA [Granulicatella elegans ATCC 700633]
          Length = 103

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          ++ DLF G+GG    L + F     E   ++E++      Y+ N P   +I  DI+K+  
Sbjct: 4  QVIDLFFGVGG----LSKEFFDSGFEIVLANEVDYSIANFYKKNHPKVKMINEDISKLDI 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
           D+ +     DV++ G PCQ FSQ G
Sbjct: 60 DDVFNEYKNIDVIVWGPPCQGFSQKG 85


>gi|238917713|ref|YP_002931230.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238873073|gb|ACR72783.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 477

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 19/93 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSS---EINPYSVKTYQANFPNT----LIFG 54
           LK+ DLFCG GG+ L   Q       E F +S   +I    V TY  N P T    ++ G
Sbjct: 102 LKMLDLFCGAGGLSLGFTQ-------EGFVTSLANDIQDCCVDTYAHNHPETPRDHIVLG 154

Query: 55  DIAK-IKTQDI----PDHDVLLAGFPCQPFSQA 82
           DI   +K  D      + D+++ G PCQ FS A
Sbjct: 155 DIKDVVKNLDELLAGRNVDIVVGGPPCQGFSMA 187


>gi|127485|sp|P16668|MTS3_STAAU RecName: Full=Modification methylase Sau3AI; Short=M.Sau3AI;
          AltName: Full=Cytosine-specific methyltransferase
          Sau3AI
 gi|153100|gb|AAA26673.1| Sau3AIM protein [Staphylococcus aureus]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ +LF G+GG RL LE T N    +  ++++  P     ++   Y   F N +    D
Sbjct: 4  IKVVELFAGVGGFRLGLENTKNGI-FDITWANQWEPSRKIQHAFDCYSKRFKNGIHSNKD 62

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          IA++  +++   + D+++ GFPCQ +S A
Sbjct: 63 IAQVSDEEMANTEADMIVGGFPCQDYSVA 91


>gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           L    LF G GG  L         NV  F   E++P   K Y+ NFPN+  + GDI +I+
Sbjct: 117 LNAISLFSGCGGFSLGFSAA--GFNVRGFL--ELDPGLRKIYRLNFPNSFEMGGDITQIQ 172

Query: 61  TQDIPDH-------DVLLAGFPCQPFSQAG 83
              I ++       DV++ G PCQ FS +G
Sbjct: 173 DAKIKNYKSLIGDIDVIIGGPPCQGFSLSG 202


>gi|303237411|ref|ZP_07323977.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302482361|gb|EFL45390.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 383

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           +LF G GG+ L  E+  F+H        +E+N  + +T ++N PN  ++  DI  +    
Sbjct: 48  ELFAGAGGLALGFEKAGFHH-----VMLNELNREACETLRSNRPNWNVLEADIHNVDFSK 102

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
             +  D+L  GFPCQ FS AG
Sbjct: 103 WHNQIDLLTGGFPCQAFSYAG 123


>gi|308229532|gb|ADO24181.1| M.ApaI [Acetobacter pasteurianus subsp. pasteurianus]
          Length = 349

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  DLF G GG+ L ++    H  +E     E N  +V TY A+ P+   +  DI  I 
Sbjct: 1  MKALDLFSGPGGLSLGMK----HAGIEPVACVEKNKDAVSTYDAHTPDAEHYCSDIRSIS 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +      D++  G PCQPFS  G
Sbjct: 57 FERYRGLVDIVFGGPPCQPFSTGG 80


>gi|218245850|ref|YP_002371221.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058898|ref|YP_003136786.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218166328|gb|ACK65065.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256589064|gb|ACU99950.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   S EI+P     +  NFP  ++I  DI  I  Q+I
Sbjct: 10 DLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCLVHHYNFPFWSIICRDIQTITGQEI 65

Query: 65 P------DH--DVLLAGFPCQPFSQAG 83
                 +H  DV+  G PCQ FS  G
Sbjct: 66 RQLSKVGNHPIDVVFGGPPCQGFSLMG 92


>gi|167746050|ref|ZP_02418177.1| hypothetical protein ANACAC_00745 [Anaerostipes caccae DSM 14662]
 gi|167654565|gb|EDR98694.1| hypothetical protein ANACAC_00745 [Anaerostipes caccae DSM 14662]
          Length = 615

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L    +     +   ++SEI P+ ++      P    +GDI+K+  
Sbjct: 6  LTLGSLFDGSGGFPLGGLIS----GITPLWASEIEPFPIRVTTKRLPQVKHYGDISKMNG 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+   D++  G PCQ  S AG
Sbjct: 62 ADLKPVDIITFGSPCQDMSIAG 83


>gi|3746579|gb|AAC64006.1| cytosine methyltransferase [Paramecium bursaria Chlorella virus
          NYs1]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L        VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGLRGF-----VEPVAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          +D  +  D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|213618692|ref|ZP_03372518.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
           +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+
Sbjct: 92  RFIDLFAGIGGIRRGFEAI----GGQCVFTSEWNKHAVRTYKANY 132


>gi|29566860|ref|NP_818425.1| gp127 [Mycobacterium phage Omega]
 gi|29425585|gb|AAN12767.1| gp127 [Mycobacterium phage Omega]
          Length = 247

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLF GIGG  L L++       +   + EI+    +    ++P+ + F DI  +  
Sbjct: 3  LTHVDLFAGIGGFSLTLQRA----GAKTVANVEIDKNCRQILARHYPDAVQFDDIKNVSG 58

Query: 62 QD------IPDHDVLLAGFPCQPFS 80
           D      +P+  +L  GFPCQ  S
Sbjct: 59 DDLRSVGFVPERGILTGGFPCQDIS 83


>gi|314942783|ref|ZP_07849602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133C]
 gi|314953681|ref|ZP_07856564.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133A]
 gi|313594323|gb|EFR73168.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133A]
 gi|313598474|gb|EFR77319.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133C]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIK--- 60
          DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +    
Sbjct: 5  DLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSVSDEF 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 61 IQSLGPVDILCGGFPCQAFSIAG 83


>gi|229066883|ref|ZP_04201078.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus cereus AH603]
 gi|228715383|gb|EEL67217.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus cereus AH603]
          Length = 251

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +       +E     EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWA----GIETAAFCEIEEFNQKVLRKNYPNIPIFPDLYKLAK 56

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          Q       D+    V+ AG+PCQ  S  G
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESLVG 85


>gi|167648711|ref|YP_001686374.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167351141|gb|ABZ73876.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 375

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---GDIAKIKTQ 62
          + F G G  RL L + +      C F+++ +P    TY+ N  +       GD+ KI   
Sbjct: 11 EFFAGGGMARLGLGEAWT-----CAFANDFDPVKAATYRDNHKDAATHFHEGDVWKIAAA 65

Query: 63 DIPDH-DVLLAGFPCQPFSQAG 83
          D+P   D+  A  PCQ FS AG
Sbjct: 66 DLPGQADLAWASSPCQDFSLAG 87


>gi|157953073|ref|YP_001497965.1| hypothetical protein NY2A_B769R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155123300|gb|ABT15168.1| hypothetical protein NY2A_B769R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L        VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGLRGF-----VEPVAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          +D  +  D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|69244913|ref|ZP_00603103.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257883136|ref|ZP_05662789.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|257891884|ref|ZP_05671537.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,410]
 gi|258616872|ref|ZP_05714642.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|289567034|ref|ZP_06447433.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          D344SRF]
 gi|293563825|ref|ZP_06678258.1| methyl transferase [Enterococcus faecium E1162]
 gi|294619669|ref|ZP_06699086.1| methyl transferase [Enterococcus faecium E1679]
 gi|68196079|gb|EAN10510.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257818794|gb|EEV46122.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|257828244|gb|EEV54870.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,410]
 gi|289161170|gb|EFD09071.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          D344SRF]
 gi|291594089|gb|EFF25546.1| methyl transferase [Enterococcus faecium E1679]
 gi|291604195|gb|EFF33696.1| methyl transferase [Enterococcus faecium E1162]
          Length = 380

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIK--- 60
          DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A  +    +   DI  +    
Sbjct: 5  DLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSVSDEF 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q +   D+L  GFPCQ FS AG
Sbjct: 61 IQSLGPVDILCGGFPCQAFSIAG 83


>gi|157691352|ref|YP_001485814.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680110|gb|ABV61254.1| possible DNA (cytosine-5-)-methyltransferase [Bacillus pumilus
          SAFR-032]
          Length = 261

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          +LF GIGGI L  E       +E     E N +  K    NFP   +F D+ K+  + + 
Sbjct: 14 ELFAGIGGIALAAEMA----GIEVMVFCEQNDFCRKVLNKNFPGVPVFNDVKKLNRELLE 69

Query: 66 DH---------DVLLAGFPCQPFSQAG 83
          +          D++  G+PCQ  S  G
Sbjct: 70 EEGLINRNESIDIISGGYPCQGESVIG 96


>gi|229056682|ref|ZP_04196086.1| Site-specific DNA-methyltransferase [Bacillus cereus AH603]
 gi|228720618|gb|EEL72179.1| Site-specific DNA-methyltransferase [Bacillus cereus AH603]
          Length = 602

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIF 53
           KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P     
Sbjct: 24  KIIDLFAGAGGLSNGFEQT---GKFEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSEI 80

Query: 54  GDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
            DI+ I  Q         P   V++ G PCQ FS A
Sbjct: 81  SDISSINFQKFMMQKGIDPSETVVIGGPPCQGFSNA 116


>gi|319757808|gb|ADV69750.1| hypothetical protein SSUJS14_0659 [Streptococcus suis JS14]
          Length = 424

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LSFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWTAGSPCQNVSIAG 82


>gi|209528195|ref|ZP_03276665.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491380|gb|EDZ91765.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
           DLF G GGI     Q F         S EINP +  T+Q NFPN   F GD+        
Sbjct: 63  DLFSGAGGI----TQGFWQAGFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFNPHQW 118

Query: 65  ------PDHDVLLAGFPCQPFSQAG 83
                 P   +++ G PCQ FS AG
Sbjct: 119 LSKIGSPSVHLVVGGPPCQGFSVAG 143


>gi|328766176|gb|EGF76234.1| hypothetical protein BATDEDRAFT_28720 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 27/107 (25%)

Query: 2   LKITDLFCGIGGIRLDLE------QTFNHRNVECF------------------FSSEINP 37
           L +  LF G GG+ L LE           + +E F                  +S+++  
Sbjct: 14  LTVLGLFSGCGGLDLGLELAGLAAAIGEEKALEAFKNKEKFDAIRGESIFHTIYSNDLFK 73

Query: 38  YSVKTYQANFPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + ++Y+ NFP+T     DI KIK  + P+ D++L GFPC  FS+AG
Sbjct: 74  EANESYKLNFPSTFQHELDIRKIK--EFPNADLVLGGFPCPGFSEAG 118


>gi|322492416|emb|CBZ27690.1| modification methylase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 847

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 44  QANFPNT------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  FP+        + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 422 EGGFPDATACSVPFLVGDITEIPSAFFPMHDVLTGGFPCQSFAKAG 467


>gi|299469435|emb|CBH51836.1| putative DNA (cytosine-5-)-methyltransferase [Campylobacter fetus
           subsp. fetus]
          Length = 105

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQ------------TFNHRNVECFFSS----EINPYSVKTYQA 45
           ++I DLF GIGG  L  E             T      + FF +    EI+    K  + 
Sbjct: 4   MQILDLFSGIGGFSLGFESANFKDYDFLKLPTKQESVNDGFFKTTAFCEIDTNCHKVLKK 63

Query: 46  NFPNTLIFGDIAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
           ++ + +IF D+ KI   D+      D++  GFPCQ  S AG
Sbjct: 64  HWASAIIFNDVTKITKDDLAPLGKIDIITGGFPCQDLSIAG 104


>gi|70725582|ref|YP_252496.1| hypothetical protein SH0581 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68446306|dbj|BAE03890.1| shlA1M [Staphylococcus haemolyticus JCSC1435]
          Length = 412

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANF-PNTLIFGD 55
          LK+ +LF G+GG RL LE T   +  +  ++++  P     ++   Y + F     +  D
Sbjct: 4  LKVAELFAGVGGFRLGLENT-KEKIFDVTWANQWEPSKKIQHAFDCYNSRFITGEHVNKD 62

Query: 56 IAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
          IA I  ++I +   D+++ GFPCQ +S A
Sbjct: 63 IALISDEEIANTKADMVVGGFPCQDYSVA 91


>gi|67924379|ref|ZP_00517809.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67853772|gb|EAM49101.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 435

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          DLF G+GG+ L  EQ       +   S EI+P     ++ NFP  T I   +  IK  +I
Sbjct: 10 DLFAGVGGMTLGFEQA----GFDVLASVEIDPIHCSIHRYNFPFWTTICASVTSIKASEI 65

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         DV+  G PCQ FS  G
Sbjct: 66 RELSTIKNKPIDVVFGGPPCQGFSLMG 92


>gi|260431846|ref|ZP_05785817.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260415674|gb|EEX08933.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 381

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 29 CFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          C F+++I+     +Y+AN      L+  D+AK+   +IP   D++ A FPCQ  S AG
Sbjct: 25 CLFANDIDAKKAASYRANHDGGRELLLKDVAKVTVDEIPGSADLVWASFPCQDLSLAG 82


>gi|76788592|ref|YP_329366.1| prophage LambdaSa04, methyltransferase C-5 [Streptococcus
          agalactiae A909]
 gi|76563649|gb|ABA46233.1| prophage LambdaSa04, methyltransferase, C-5 cytosine-specific
          family [Streptococcus agalactiae A909]
          Length = 417

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F G+GG R  LE       + C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GMTCLGYCEKDKFARKSYEAMYDTEGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTRLPKADLWTAGSPCQNLSIAG 82


>gi|297527509|ref|YP_003669533.1| DNA-cytosine methyltransferase [Staphylothermus hellenicus DSM
          12710]
 gi|297256425|gb|ADI32634.1| DNA-cytosine methyltransferase [Staphylothermus hellenicus DSM
          12710]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          K  DLFCG GG       T   R++         P + +TY+ NFP+++ +  DI +I+ 
Sbjct: 6  KFIDLFCGAGGFAEGFILTNRFRSI--LGIDNFRP-AAQTYKINFPDSIVVMEDIKRIRN 62

Query: 62 QDI-----PDH-DVLLAGFPCQPFSQA 82
           D+     P+  DV++   PC+PF+ A
Sbjct: 63 DDLIEIVDPEEIDVVIGSPPCEPFTGA 89


>gi|261495470|ref|ZP_05991917.1| modification methylase Bsp6I-like protein [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261308804|gb|EEY10060.1| modification methylase Bsp6I-like protein [Mannheimia haemolytica
          serotype A2 str. OVINE]
          Length = 157

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 30 FFSSEINPYSVKTYQANFPNTLIFGDI----AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + SEI P+        FP+    GD+     KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 27 LWFSEIEPFPCAVLAHRFPDVPNLGDMIALPEKILNREIPAPDVLVGGTPCQAFSMAG 84


>gi|118577457|ref|YP_899696.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118504962|gb|ABL01443.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          M+ +  LF G GG+ L     F+           +  +++E+N  + +TY+ N  + +  
Sbjct: 7  MITVVSLFSGCGGMDLGFSGGFDFLGEHYAKTQFKIIWANELNGAACRTYRKNIGHHIKE 66

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          GDI +   +     D+++ GFPCQ  S  G
Sbjct: 67 GDIWQTMPEMPQSADLVIGGFPCQDISVNG 96


>gi|312889577|ref|ZP_07749127.1| C-5 cytosine-specific DNA methylase [Mucilaginibacter paludis DSM
          18603]
 gi|311297925|gb|EFQ75044.1| C-5 cytosine-specific DNA methylase [Mucilaginibacter paludis DSM
          18603]
          Length = 79

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML    LF GIGG   D+  T+  +     FS E +P+  K  +  +P T  + DI +  
Sbjct: 1  MLTHASLFSGIGG--FDMAATW--KGWYNIFSCEKDPFCRKILKFYWPQTEQYEDIHQFD 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQA 82
                  ++L  GFPCQPFS A
Sbjct: 57 ATPYRGSINILSGGFPCQPFSSA 79


>gi|220930206|ref|YP_002507115.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000534|gb|ACL77135.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 719

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +E  ++SEI P+ ++      P    +GDI K+  
Sbjct: 4  LTLGSLFDGSGGFPLGGLLC----GIEPLWASEIEPFPIRVTTKRIPQMKHYGDINKLNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++  G PC   S AG
Sbjct: 60 AELPPVDIITFGSPCTDMSVAG 81


>gi|288926887|ref|ZP_06420787.1| modification methylase HindV (Cytosine-specific methyltransferase
          HindV) [Prevotella buccae D17]
 gi|288336326|gb|EFC74707.1| modification methylase HindV (Cytosine-specific methyltransferase
          HindV) [Prevotella buccae D17]
          Length = 313

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG+ L  E+      +   F + ++   V  Y+ NF +  I  D+  +K 
Sbjct: 1  MKVVDLFCGCGGLSLGFEKA--GMEIVAAFDNWVDALYV--YRNNFSHPAIRADLMNVKA 56

Query: 62 QDIP----DHDVLLAGFPCQPFSQAG 83
                    D+++ G PCQ FS AG
Sbjct: 57 SIEAIRPFKPDMIIGGPPCQDFSSAG 82


>gi|157691446|ref|YP_001485908.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680204|gb|ABV61348.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 548

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLF G GG+ L   QT      E   + EIN  + +TY  N    +   DI  I  +
Sbjct: 5  KVLDLFAGAGGLSLGFSQT---GRFETVMAVEINENAAQTYTKNHKIEVNTQDIRSINFK 61

Query: 63 DIPDHDVL------LAGFPCQPFSQAG 83
          D   + +L      + G PCQ FS A 
Sbjct: 62 DYKKYPILKEVSLVIGGPPCQGFSNAN 88


>gi|320101441|ref|YP_004177033.1| DNA-cytosine methyltransferase [Desulfurococcus mucosus DSM 2162]
 gi|319753793|gb|ADV65551.1| DNA-cytosine methyltransferase [Desulfurococcus mucosus DSM 2162]
          Length = 323

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  D+F G GG  L    +   +++    S    P + +TY+ANFP+TL+  +  K  T 
Sbjct: 6  KYIDVFSGAGGFSLGFHLSGRFKSLLAVDS--FKP-AAETYKANFPHTLVVNEDVKDLTG 62

Query: 63 DI------PDH-DVLLAGFPCQPFSQA 82
          +I      PD  DV++   PC+PF+ A
Sbjct: 63 EILTGLVKPDEVDVVIGSPPCEPFTGA 89


>gi|312133558|ref|YP_004000897.1| dcm2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772809|gb|ADQ02297.1| Dcm2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 429

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 27/106 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV------------------KTY 43
           ++I +LF G+GG RL L+     +  + F+     P+                    + Y
Sbjct: 5   IRIAELFAGVGGFRLGLDGY--GKKGDAFYMEPAGPFHTVWANQWEPTGQESKQFAWRCY 62

Query: 44  QANF-PNTLIFGDIAKI------KTQDIPDHDVLLAGFPCQPFSQA 82
           +  F   + +  DIAK+       T+ IP+ D+L+ GFPCQ +S A
Sbjct: 63  EKRFGEGSCVNEDIAKVLDEVDAGTRTIPEFDMLVGGFPCQDYSVA 108


>gi|209525887|ref|ZP_03274422.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493696|gb|EDZ94016.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L     F+    +  ++ + N  + +T++ N    +   +I +I+  
Sbjct: 17 KLISLFSGCGGMDL----PFHRAGFQVVWAIDCNEAACQTFRRNISENIACDNIQEIEIT 72

Query: 63 DIPDHDVLLAGFPCQPFS 80
           +P  D++  GFPCQ FS
Sbjct: 73 KVPQADLITGGFPCQDFS 90


>gi|328772423|gb|EGF82461.1| hypothetical protein BATDEDRAFT_3612 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 344

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + F GIGG+   LE+  +   V   F  ++N ++   YQ NF        I  +  
Sbjct: 4  LRVLEFFSGIGGLHYGLERAESTATVLASF--DVNEHANSCYQHNFGIKPSNKSIDTLTA 61

Query: 62 QDIPDHD--VLLAGFPCQPFSQAG 83
          +DI  +D    L   PCQPF+Q G
Sbjct: 62 KDIEKYDSNCWLLSPPCQPFTQGG 85


>gi|313575370|emb|CBR26899.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWCAGSPCQNVSIAG 82


>gi|262113733|emb|CAR95400.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 417

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWCAGSPCQNVSIAG 82


>gi|294673126|ref|YP_003573742.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
          23]
 gi|294473536|gb|ADE82925.1| DNA methylase, C-5 cytosine-specific family [Prevotella
          ruminicola 23]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          KI  +F G+GGI    +  F+H   +  F+++    +  +++AN+P+  ++   IA +  
Sbjct: 4  KIVSIFSGVGGI----DTGFSHAGFQTVFANDNWQNACDSFKANYPDAEVVCASIADVDF 59

Query: 62 QDIP----DHDVLLAGFPCQPFSQA 82
          ++I     D D L+ G PC PFS++
Sbjct: 60 KEIKKKYGDIDGLVGGPPCPPFSKS 84


>gi|257867242|ref|ZP_05646895.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873577|ref|ZP_05653230.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801298|gb|EEV30228.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807741|gb|EEV36563.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
          Length = 373

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1  MLKITDL-----FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          M++IT+L     F GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD
Sbjct: 15 MIRITNLTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGD 70

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + K+    IP  D++  G PCQ  S  G
Sbjct: 71 LTKLHGGKIPPVDIVTFGSPCQNLSTIG 98


>gi|4033740|gb|AAC97192.1| modification methylase M.NspHI [Nostoc sp. ATCC 29106]
          Length = 397

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK----- 58
            DLFCG GGI   L Q       +   S E +  +  T+Q NFP+   F GDI +     
Sbjct: 63  VDLFCGAGGITQGLIQA----GFQALASVETSSIASATHQRNFPHCHHFCGDIEQFSPKI 118

Query: 59  -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            +K    P+ ++++ G PCQ FS AG
Sbjct: 119 WLKQIGSPEVNLVVGGPPCQGFSVAG 144


>gi|42779474|ref|NP_976721.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
 gi|42735390|gb|AAS39329.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
          Length = 719

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +E  ++SEI P+ ++      P    +GDI K+  
Sbjct: 4  LTLGSLFDGSGGFPLGGLLC----GIEPLWASEIEPFPIRVTTKRIPQMKHYGDINKLNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++  G PC   S AG
Sbjct: 60 AELPPVDIITFGSPCTDMSVAG 81


>gi|157953001|ref|YP_001497893.1| hypothetical protein NY2A_B697R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155123228|gb|ABT15096.1| hypothetical protein NY2A_B697R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L+  DLF GIGGI   L +      VE     E N  +    +   P   +F D+    
Sbjct: 2  VLRALDLFSGIGGITHGLREI-----VEPIAFVEKNDEARSFLKKKHPEIPVFDDVCSFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D++LAG+PC  FS AG
Sbjct: 57 ATKWTHVDIILAGWPCTGFSNAG 79


>gi|167644366|ref|YP_001682029.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167644566|ref|YP_001682229.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167346796|gb|ABZ69531.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167346996|gb|ABZ69731.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AKIK 60
          + DLF G GG    L + F          S+ +P ++ TY  NFP    I+GD+   ++K
Sbjct: 10 VVDLFAGAGG----LSEGFRQAGFSIIAGSDNDPDALATYATNFPEARSIWGDVRTPEVK 65

Query: 61 TQDIP---DHDVLLAGFPCQPFSQ 81
           Q +       +++ G PCQ FSQ
Sbjct: 66 AQILDAARSASIIVGGPPCQAFSQ 89


>gi|328768493|gb|EGF78539.1| hypothetical protein BATDEDRAFT_13083 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 350

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + F GIGG+   LE+  +   V   F  ++N ++   YQ NF        I  +  
Sbjct: 5  LRVLEFFSGIGGLHYGLERAESTATVLASF--DVNEHANSCYQHNFGIKPSNKSIDTLTA 62

Query: 62 QDIPDHD--VLLAGFPCQPFSQAG 83
          +DI  +D    L   PCQPF+Q G
Sbjct: 63 KDIEKYDSNCWLLSPPCQPFTQGG 86


>gi|293395454|ref|ZP_06639738.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
 gi|291422138|gb|EFE95383.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
          Length = 354

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          D FCG GG    L Q       +     +++  + +TY+ANFP+   IF DI  +  + +
Sbjct: 5  DFFCGCGGASEGLRQA----GFDVVLGIDVDQQASETYKANFPDADFIFDDIRNVTVERV 60

Query: 65 P--------DHDVLLAGFPCQPFSQ 81
                   D  +L A  PCQPFSQ
Sbjct: 61 ANSIAFKSADGLLLSACAPCQPFSQ 85


>gi|312902260|ref|ZP_07761468.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
 gi|310634319|gb|EFQ17602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
          Length = 359

 Score = 42.7 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1  MLKITDL-----FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          M++IT+L     F GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD
Sbjct: 1  MIRITNLTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGD 56

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + K+    IP  D++  G PCQ  S  G
Sbjct: 57 LTKLHGGKIPPVDIVTFGSPCQNLSTIG 84


>gi|283782595|ref|YP_003373349.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|283441341|gb|ADB13807.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
          Length = 424

 Score = 42.7 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLE-QTFNHRN---------VECFFSSEINP-------YSVKTYQ 44
           +K+ +LF G+GG RL LE  T +  N          +  ++++  P       ++ + Y+
Sbjct: 5   IKVAELFAGVGGFRLGLEGYTPSEENNFTAEPAGPFKTVWANQWEPAGQESKQFAWRCYE 64

Query: 45  ANF-PNTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA++  +      DIP+ D+L+ GFPCQ +S A
Sbjct: 65  KRFGKGSCVNEDIAEVLKKFEHGECDIPNFDMLVGGFPCQDYSVA 109


>gi|229133328|ref|ZP_04262157.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
 gi|228650144|gb|EEL06150.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTLIF-- 53
          M+ + +LF G+GG R+ LE+  NH  V   + ++  P      +   Y   F +  I   
Sbjct: 1  MINVIELFAGVGGFRIGLEK-MNHFQV--VWGNQWEPSKKAQDAFHCYAQRFQDKGIHCN 57

Query: 54 GDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
           DIA +  ++I   D D+++ GFPCQ +S A
Sbjct: 58 QDIATVTDEEIQKIDADMIVGGFPCQDYSVA 88


>gi|15894505|ref|NP_347854.1| DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum ATCC 824]
 gi|15024146|gb|AAK79194.1|AE007635_8 DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum ATCC 824]
 gi|325508636|gb|ADZ20272.1| DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum EA 2018]
          Length = 314

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++K  +LF GIG  R   +      +++     EI+P  VKTY   F   L++      K
Sbjct: 6  IIKTLELFGGIGAPRKAFKNI--GIDIKAIDYVEIDPKPVKTYNEMFKKDLMY------K 57

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
          TQ++  +    DVL+ G PCQ FS AG
Sbjct: 58 TQNVIGYNLKPDVLIHGSPCQDFSIAG 84


>gi|222151724|ref|YP_002560880.1| type II modification methyltransferase [Macrococcus caseolyticus
          JCSC5402]
 gi|222120849|dbj|BAH18184.1| type II modification methyltransferase [Macrococcus caseolyticus
          JCSC5402]
          Length = 413

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ ++F G+GG R+ LE T N+   E  ++++  P     ++   Y  NF   +    D
Sbjct: 4  IKVAEMFAGVGGFRIGLENT-NNNMFEVTWANQWEPSRKVQHAFDCYSRNFKTGIHSNQD 62

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I ++   ++   + D+++ GFPCQ +S A
Sbjct: 63 ITEVPNAELAATNVDMIVGGFPCQDYSVA 91


>gi|126658774|ref|ZP_01729918.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
 gi|126619872|gb|EAZ90597.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI--- 64
           F G  G+ L +EQT     + C    EI+ Y  +T   N PN  + GDI      DI   
Sbjct: 77  FSGAMGLDLGIEQTGFDIKLAC----EIDKYCRQTITLNKPNIALVGDINSYSADDILSY 132

Query: 65  ------PDHDVLLAGFPCQPFSQAG 83
                  D D+++ G PCQ FS AG
Sbjct: 133 AGLTRSDDIDLIVGGPPCQAFSTAG 157


>gi|283466067|emb|CBG92842.1| hypothetical protein [Enterococcus casseliflavus]
          Length = 359

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1  MLKITDL-----FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          M++IT+L     F GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD
Sbjct: 1  MIRITNLTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGD 56

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + K+    IP  D++  G PCQ  S  G
Sbjct: 57 LTKLHGGKIPPVDIVTFGSPCQNLSTIG 84


>gi|315654951|ref|ZP_07907856.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          51333]
 gi|315490912|gb|EFU80532.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          51333]
          Length = 508

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG  L   +      +E  ++SEI P+ +       P     GDI  I  
Sbjct: 5  LRLGSLFDGSGGFPLAATKV----GIEPVWASEIEPFPILVTTTRLPQMQHLGDICDIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 61 SQLEPVDVVTFGSPCQDLSVAG 82


>gi|294673411|ref|YP_003574027.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
          23]
 gi|294473101|gb|ADE82490.1| DNA methylase, C-5 cytosine-specific family [Prevotella
          ruminicola 23]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          +K+ DLFCG GG+ L  ++     N+   F +  +  +V  Y ANF + +I  D++ +  
Sbjct: 1  MKVVDLFCGCGGLSLGFQKA--GFNILAAFDNWDDAITV--YHANFKHPVIKQDLSNVDQ 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
            + +  +  D+++ G PCQ FS AG
Sbjct: 57 TVEKVKKYKPDMIIGGPPCQDFSSAG 82


>gi|153855943|ref|ZP_01996894.1| hypothetical protein DORLON_02919 [Dorea longicatena DSM 13814]
 gi|149751791|gb|EDM61722.1| hypothetical protein DORLON_02919 [Dorea longicatena DSM 13814]
          Length = 433

 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ-----------ANFPNTLI 52
          I +LF G+GG RL  ++       E  + S+  P   K +            A+      
Sbjct: 5  ICELFAGVGGFRLGFDKL--ESGWETTWFSQWEPGKKKQWAHDCYVYHYGDCADLKGEFH 62

Query: 53 FG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           G DI+++   +IP+H++L+ GFPCQ +S A
Sbjct: 63 TGEDISQMNKNNIPNHNLLVGGFPCQDYSVA 93


>gi|229820628|ref|YP_002882154.1| C-5 cytosine-specific DNA methylase [Beutenbergia cavernae DSM
          12333]
 gi|229566541|gb|ACQ80392.1| C-5 cytosine-specific DNA methylase [Beutenbergia cavernae DSM
          12333]
          Length = 316

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG+ L +E  F+    E  + SE+N    + +  ++P+    GDI  +  
Sbjct: 12 LRVGPLFSGRGGLDLAVEHVFS---AETIWFSELNETVARIFGRHWPDAPNLGDITAMDR 68

Query: 62 QDIPDHDVLLAGFPCQ 77
          +     D+L   FPCQ
Sbjct: 69 RAAAPVDILTGVFPCQ 84


>gi|179506952|gb|ACB86652.1| EagI methylase [Pantoea agglomerans]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   L+        +  F++E+ P   +TY  N PN  ++ GDI  I   ++
Sbjct: 9  DLFAGAGGLTCGLDMA----GFQSIFANELVPVYAETYSKNHPNAEMVVGDIRAIAESNL 64

Query: 65 --------PDHDVLLAGFPCQPFS 80
                   + D+L  G PCQ FS
Sbjct: 65 MKSLGLKAGELDLLAGGPPCQGFS 88


>gi|307293581|ref|ZP_07573425.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306879732|gb|EFN10949.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 19/94 (20%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI---- 56
          +K   LF G GG     E        E   + E + Y+  TY+ NFP T +F GDI    
Sbjct: 1  MKAVSLFAGCGGFCEGAELA----GFEITVAVEWDKYACMTYRENFPKTPLFEGDIHDFL 56

Query: 57 -------AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                  K K +D+   D++  G PCQ FSQ G
Sbjct: 57 KPGSDHETKYKLKDL---DLVFGGPPCQGFSQIG 87


>gi|207108548|ref|ZP_03242710.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 171

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          FGD+ +I   D+PD D L++GFPCQ FS  G
Sbjct: 5  FGDLMRINPNDLPDFDALISGFPCQAFSING 35


>gi|325294602|ref|YP_004281116.1| DNA-cytosine methyltransferase [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325065050|gb|ADY73057.1| DNA-cytosine methyltransferase [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          ++I  LF G GG+ L  E           ++++ +    +TY  NFP T +   D+  I 
Sbjct: 1  MEIVSLFSGCGGLDLGFELA----GFSIVWANDNDKDVWETYTRNFPGTYLDKRDLRVIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD   ++ G PCQ +S+AG
Sbjct: 57 VSDIPDCVGIIGGPPCQSWSEAG 79


>gi|17229768|ref|NP_486316.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17131367|dbj|BAB73975.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 431

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 19/90 (21%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------------ 53
           DLF G GG+ L  EQ       +   + EI+P     ++ NFP   +             
Sbjct: 21  DLFAGAGGMSLGFEQA----GFDVLAAVEIDPIHCAVHEYNFPFCSVLCKSVEETTGKEI 76

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            D +KI  Q+I   DV++ G PCQ FS  G
Sbjct: 77  RDRSKINNQEI---DVIICGSPCQGFSLMG 103


>gi|254456253|ref|ZP_05069682.1| Cytosine-specific methyltransferase HphIA [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207083255|gb|EDZ60681.1| Cytosine-specific methyltransferase HphIA [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 342

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          ML + D F G GG    L Q F     +   + +     +KT+  NF ++     D+   
Sbjct: 1  MLSVNDFFSGCGG----LSQGFKEAGFKIQVAVDKEEAFLKTFSHNFKDSQTKNLDLGDS 56

Query: 60 KT-QDIPDHDVLLAGFPCQPFSQAG 83
          KT  DIP  D+++AG PCQ FS  G
Sbjct: 57 KTLNDIPKSDIIIAGPPCQGFSITG 81


>gi|294794108|ref|ZP_06759245.1| DNA (cytosine-5-)-methyltransferase [Veillonella sp. 3_1_44]
 gi|294455678|gb|EFG24050.1| DNA (cytosine-5-)-methyltransferase [Veillonella sp. 3_1_44]
          Length = 527

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDI 56
          MLK  DLF G GG+ L  E T   +      ++EIN  +  TY+ N     P   +  DI
Sbjct: 1  MLKTIDLFAGAGGLSLGFEMTGKFK---VLAAAEINKNAQATYKKNIVEGKPTFTMIEDI 57

Query: 57 AKIKTQDIPDH----DVLLAGFPCQPFSQA 82
                ++ +     DV++ G PCQ FS A
Sbjct: 58 NGYDFMELNEKLGGIDVVIGGPPCQGFSNA 87


>gi|205360554|ref|ZP_02684441.2| modification methylase DdeI [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|205348823|gb|EDZ35454.1| modification methylase DdeI [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
          Length = 394

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG  L     F+    E   + E++ ++ +T++ N P +L+   DI++  
Sbjct: 4  VKVLDTFAGAGGFSLG----FHMAGAEIIGAIEVDSWATETFKFNHPESLVIKKDISQFS 59

Query: 61 TQDIPDH------DVLLAGFPCQPFSQA 82
           ++I +       D++L G PCQ FS A
Sbjct: 60 DEEILETFKNNKPDIILGGPPCQGFSIA 87


>gi|167571686|ref|ZP_02364560.1| C-5 cytosine-specific DNA methylase [Burkholderia oklahomensis
          C6786]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M    + F G G  R  L   +     EC F+++ +     +Y AN+  + L   D+A +
Sbjct: 1  MYSFYEFFAGGGMARAGLGSDW-----ECQFANDFDSKKAISYAANWGDDHLNSDDVAAL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
           T D+P H D+  A FPCQ  S AG
Sbjct: 56 STADLPGHVDLAWASFPCQDLSLAG 80


>gi|153955901|ref|YP_001396666.1| hypothetical protein CKL_3292 [Clostridium kluyveri DSM 555]
 gi|219856251|ref|YP_002473373.1| hypothetical protein CKR_2908 [Clostridium kluyveri NBRC 12016]
 gi|146348759|gb|EDK35295.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219569975|dbj|BAH07959.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 302

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C F+     Y  +  + ++P+   + D+  I  + + +
Sbjct: 19 LFTGIGGIDLAAEWAGFKTVGQCEFAD----YPTRVLEKHWPDVERWKDVRSITVESVRE 74

Query: 67 H-----DVLLAGFPCQPFSQAG 83
                 VL AGFPCQP S AG
Sbjct: 75 RGIQEVTVLSAGFPCQPHSVAG 96


>gi|40063394|gb|AAR38205.1| C-5 cytosine-specific DNA methylase [uncultured marine bacterium
           580]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 26/107 (24%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN---------------VECFFSSEINPYS-----VK 41
           LK+ +LF G+GG RL LE    +++                E  +S++  P +       
Sbjct: 4   LKVAELFAGVGGFRLGLEGWKKNKDFFSASSDYKKKMPPLFEVVWSNQFEPLTKSQPASD 63

Query: 42  TYQANFPNTLIFG---DIAKIKTQD---IPDHDVLLAGFPCQPFSQA 82
            Y+  F ++       DI  +   D   IP HD+L+ GFPCQ +S A
Sbjct: 64  IYEQRFNSSTSLHSRVDIEHLVKNDIHSIPFHDLLVGGFPCQDYSVA 110


>gi|325270791|ref|ZP_08137382.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
 gi|324986907|gb|EGC18899.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           +LF G GG+ L + +  F H        +EI P + +T + N P+  ++  DI ++    
Sbjct: 77  ELFAGCGGLALGIHKAGFRH-----VLLNEIEPVACRTLRRNRPDWNVLNEDIHRVDFSP 131

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
           +    D+L  GFPCQ FS AG
Sbjct: 132 LSGKVDLLTGGFPCQAFSYAG 152


>gi|307565390|ref|ZP_07627879.1| C-5 cytosine-specific DNA methylase [Prevotella amnii CRIS 21A-A]
 gi|307345840|gb|EFN91188.1| C-5 cytosine-specific DNA methylase [Prevotella amnii CRIS 21A-A]
          Length = 492

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG   L        +NV   F  EIN +        FPN++ + +I   K
Sbjct: 4  IIRHASLFSGIGAPEL-AALWLGWQNV---FHCEINEFCNTILSYWFPNSINYENI---K 56

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
          T D        D+L  GFPCQPFS AG
Sbjct: 57 TTDFSKWQGQIDILTGGFPCQPFSSAG 83


>gi|291529734|emb|CBK95320.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 339

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          LKI +LF GIG  R  L+   +  ++++     EI PY+V  Y + F N     D+ K  
Sbjct: 12 LKILELFGGIGAPRKALQNLGYQLKSIDYV---EILPYAVMAYNSIFDNGYKPQDVTKWN 68

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
               D DVL+ G PCQ +S+ G
Sbjct: 69 L----DPDVLIHGSPCQDWSKNG 87


>gi|157165013|ref|YP_001467403.1| glutathionylspermidine synthase family protein [Campylobacter
          concisus 13826]
 gi|112801055|gb|EAT98399.1| conserved hypothetical protein [Campylobacter concisus 13826]
 gi|158605014|gb|ABW74816.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +KI +LF GIGG RL  +       V    + E +P   K Y   +PN  +I GD     
Sbjct: 1  MKILNLFAGIGGNRLLWDNVLPGVKVT---AVEFDPEIAKAYAKRYPNDNVIVGDAWDYA 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
           ++  D D + A  PCQ  S+
Sbjct: 58 AKNYLDFDFIWASPPCQTHSR 78


>gi|157953822|ref|YP_001498713.1| hypothetical protein AR158_C632R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068470|gb|ABU44177.1| hypothetical protein AR158_C632R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 348

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L+  DLF GIGGI   L +      VE     E N  +    +   P   +F D+    
Sbjct: 2  VLRALDLFSGIGGITHGLREI-----VEPIAFVEKNDEARSFLKKKHPEIPVFDDVCSFD 56

Query: 61 -TQDIPDHDVLLAGFPCQPFSQAG 83
           T+ I   D++LAG+PC  FS AG
Sbjct: 57 ATKWIDKVDIILAGWPCTGFSNAG 80


>gi|317495998|ref|ZP_07954360.1| DNA-cytosine methyltransferase [Gemella moribillum M424]
 gi|316913902|gb|EFV35386.1| DNA-cytosine methyltransferase [Gemella moribillum M424]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 16/97 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE-C---------FFSSEINP-----YSVKTYQAN 46
          L + +LF G+GG R+ L    + R  + C          ++++  P     ++ + Y   
Sbjct: 3  LDVVELFAGVGGFRVGLNNITDFRKKDGCAIEKNGWNFVWANQYEPSTKAQHAFECYSKR 62

Query: 47 FP-NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          F        DI K+  + IP+H +L+ GFPCQ +S A
Sbjct: 63 FQIGECSNEDINKVDKKTIPNHSLLVGGFPCQDYSVA 99


>gi|282860047|ref|ZP_06269129.1| C-5 cytosine-specific DNA methylase [Prevotella bivia JCVIHMP010]
 gi|282587175|gb|EFB92398.1| C-5 cytosine-specific DNA methylase [Prevotella bivia JCVIHMP010]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG   L        +NV   F  EIN +        FPN++   +   IK
Sbjct: 4  IIRHASLFSGIGAPEL-AALWLGWQNV---FHCEINEFCNTILSYWFPNSI---NYENIK 56

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
          T D        D+L  GFPCQPFS AG
Sbjct: 57 TTDFSKWQGQIDILTGGFPCQPFSSAG 83


>gi|325268581|ref|ZP_08135211.1| prophage LambdaBa01 protein [Prevotella multiformis DSM 16608]
 gi|324989109|gb|EGC21062.1| prophage LambdaBa01 protein [Prevotella multiformis DSM 16608]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG   L        +NV   F  EIN +        FPN++ + +I   K
Sbjct: 4  IIRHASLFSGIGAPEL-AALWLGWQNV---FHCEINEFCNTILNYWFPNSINYENI---K 56

Query: 61 TQDIP----DHDVLLAGFPCQPFSQAG 83
          T D        D+L  GFPCQPFS AG
Sbjct: 57 TTDFSRWQGQIDILTGGFPCQPFSSAG 83


>gi|298346372|ref|YP_003719059.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298236433|gb|ADI67565.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 508

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG  L   +      +E  ++SEI P+ +       P     GDI  I  
Sbjct: 5  LRLGSLFDGSGGFPLAATKV----GIEPAWASEIEPFPILVTTTRLPQMQHLGDICNIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 61 SQLEPVDVVTFGSPCQDLSVAG 82


>gi|315053597|ref|XP_003176173.1| modification methylase HphIA [Arthroderma gypseum CBS 118893]
 gi|311338019|gb|EFQ97221.1| modification methylase HphIA [Arthroderma gypseum CBS 118893]
          Length = 581

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      +   ++ + +P ++ +Y+ANFP++L    D+A   T   
Sbjct: 280 DGFCGAGGVSRGAQQA----GLRLSWAFDHSPSAMNSYRANFPSSLAETSDVADFLTNRS 335

Query: 65  PDH--DVLLAGFPCQPFSQA 82
            D   DVL    PCQPFS A
Sbjct: 336 LDIRIDVLHLSPPCQPFSPA 355


>gi|124027997|ref|YP_001013317.1| site-specific DNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123978691|gb|ABM80972.1| Site-specific DNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 319

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L++ DLF G GG      + F           + NP ++++++ANFP  +    DI ++ 
Sbjct: 4  LRLVDLFSGAGG----FAEGFRRAGFRILLGVDNNPAAIRSFKANFPEAVALAMDIQEVT 59

Query: 61 TQDIPDH----DVLLAGFPCQPFSQA 82
           + I       DV++   PC+P++ A
Sbjct: 60 GKLIESLVGPVDVVIGSPPCEPYTGA 85


>gi|60202518|gb|AAX14650.1| BbvCI methyltransferase 1 [Brevibacillus brevis]
          Length = 429

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           L   DLF G GG  L     F+        + E++ ++ +T++ NFP T ++  DI +I 
Sbjct: 19  LTAIDLFAGAGGFSLG----FSMAGFRVTHAIEVDKWAAETFEVNFPRTKVVTRDIQQIS 74

Query: 61  TQDIPD-----HDVLLAGFPCQPFSQA 82
            ++I D       V++ G PCQ FS +
Sbjct: 75  DEEIKDIIDERPLVVIGGPPCQGFSHS 101


>gi|157953702|ref|YP_001498593.1| hypothetical protein AR158_C512R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068350|gb|ABU44057.1| hypothetical protein AR158_C512R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 352

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGD 55
          ++K   LF G GG  L ++       +E     E +  ++ T++ NF       + + GD
Sbjct: 4  IMKAISLFAGAGGDSLGMKMA----GIEVVAFLENDTDAIYTHKRNFDKCHHIGSSVGGD 59

Query: 56 IAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
          I KI  ++     D D++ AGFPCQ FS AG
Sbjct: 60 ITKIPDEEFKKYGDVDIIFAGFPCQGFSNAG 90


>gi|195996059|ref|XP_002107898.1| hypothetical protein TRIADDRAFT_49657 [Trichoplax adhaerens]
 gi|190588674|gb|EDV28696.1| hypothetical protein TRIADDRAFT_49657 [Trichoplax adhaerens]
          Length = 254

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ++++ + + GIGG+   L+++  + N +   + +IN  +   Y+ NF NT ++  +I KI
Sbjct: 8  VMQVVEFYSGIGGMHYALQES--NINAKILAAIDINTVANNVYRHNFGNTPVWQREIGKI 65

Query: 60 KTQDIPD--HDVLLAGFPCQPFSQAG 83
            +++ +   D+     PCQPF++ G
Sbjct: 66 SLKELQELNGDLYTMSPPCQPFTRLG 91


>gi|30263689|ref|NP_846066.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Ames]
 gi|47529099|ref|YP_020448.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186533|ref|YP_029785.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Sterne]
 gi|65321007|ref|ZP_00393966.1| COG0270: Site-specific DNA methylase [Bacillus anthracis str.
          A2012]
 gi|165872817|ref|ZP_02217444.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0488]
 gi|167636020|ref|ZP_02394326.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0442]
 gi|167639742|ref|ZP_02398011.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0193]
 gi|170689288|ref|ZP_02880483.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0465]
 gi|170706823|ref|ZP_02897281.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0389]
 gi|177652017|ref|ZP_02934563.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0174]
 gi|190569254|ref|ZP_03022149.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813418|ref|YP_002813427.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CDC 684]
 gi|229604763|ref|YP_002867927.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0248]
 gi|254683612|ref|ZP_05147472.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721107|ref|ZP_05182898.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A1055]
 gi|254735716|ref|ZP_05193422.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Western North America
          USA6153]
 gi|254739585|ref|ZP_05197280.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Kruger B]
 gi|254751154|ref|ZP_05203193.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Vollum]
 gi|254759471|ref|ZP_05211496.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Australia 94]
 gi|30258324|gb|AAP27552.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Ames]
 gi|47504247|gb|AAT32923.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180460|gb|AAT55836.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Sterne]
 gi|164711495|gb|EDR17045.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0488]
 gi|167512143|gb|EDR87520.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0193]
 gi|167528532|gb|EDR91294.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0442]
 gi|170128241|gb|EDS97110.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0389]
 gi|170666746|gb|EDT17514.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0465]
 gi|172082386|gb|EDT67451.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0174]
 gi|190559628|gb|EDV13618.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006861|gb|ACP16604.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CDC 684]
 gi|229269171|gb|ACQ50808.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0248]
          Length = 259

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ DL  GI GI +  +         C    EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 9  LKMLDLCSGIAGISMAADWAGIDTAAFC----EIEEFNQKVLRKNYPNIPIFPDLYKLMK 64

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          Q       D+    V+ AG+PCQ  S  G
Sbjct: 65 QSLIDGGVDVDSIGVISAGYPCQGESLVG 93


>gi|56899928|ref|YP_173301.1| phage-related DNA methylase, N-terminal region [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|56800362|gb|AAW31029.1| phage-related DNA methylase, N-terminal region [Bacillus
          thuringiensis serovar konkukian str. 97-27]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          L   D F GIGG RL +E+  +H+   C    E + ++ K+Y++  N        DI  I
Sbjct: 3  LTFIDFFAGIGGFRLGMEEA-SHK---CIGYVEWDKFARKSYESIHNTRGEWTEHDINNI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
              IP  DV   GFPC   S A
Sbjct: 59 IPGAIPKADVWTFGFPCTDISIA 81


>gi|67924199|ref|ZP_00517640.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67853953|gb|EAM49271.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 358

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           +K  +LF G GG+ L LE       V      E++   V T Q N  N  IF  D++ I 
Sbjct: 72  IKTIELFAGCGGMALGLENA----GVRHELLVEVSKDCVNTLQKNRQNWTIFQEDVSNID 127

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
            Q      D++  GFPCQ FS AG
Sbjct: 128 FQQYYGKIDIVSGGFPCQAFSYAG 151


>gi|317489194|ref|ZP_07947712.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325832321|ref|ZP_08165320.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
 gi|316911702|gb|EFV33293.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486157|gb|EGC88611.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
          Length = 447

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
          SEI+P+        FP+    GDI+K++ +++    DV++ G PCQ FS AG
Sbjct: 28 SEIDPFCNAVLATRFPSVPNLGDISKVEWKEMRGEIDVVIGGSPCQSFSVAG 79


>gi|325069024|ref|ZP_08127697.1| modification methylase XorII [Actinomyces oris K20]
          Length = 201

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--I 59
          +++ DLF G GG+        +        + E++P +  +Y+A FP T ++    +  +
Sbjct: 6  IRVLDLFAGAGGLTAGFHTASSR--FRSIAAVEMDPEAAASYRATFPKTEVYAGAIQDWL 63

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
              IP   DV++ G PCQ FS  G
Sbjct: 64 AEGKIPTGVDVVVGGPPCQGFSTLG 88


>gi|161528981|ref|YP_001582807.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
 gi|160340282|gb|ABX13369.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
          Length = 360

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG+ L     F +   +   + E +  + +TY  NF  T LI  DI  IK+ 
Sbjct: 8  VIDLFAGSGGLSLG----FKNAGFKVIAAVEFDKSAAETYSKNFKETKLIVDDIKNIKSN 63

Query: 63 DIP-----DHDVLLAGFPCQPFSQA 82
          ++      +   ++ G PCQP+S A
Sbjct: 64 ELKKITSKERFCVIGGPPCQPYSNA 88


>gi|302531233|ref|ZP_07283575.1| DNA-cytosine methyltransferase [Streptomyces sp. AA4]
 gi|302440128|gb|EFL11944.1| DNA-cytosine methyltransferase [Streptomyces sp. AA4]
          Length = 371

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIKT 61
          + F GIG +RL LE        +  +S++I P     Y+A+F     +  + GD+A ++ 
Sbjct: 11 EFFAGIGLVRLGLEPA----GFDVAWSNDIEPAKQAMYEAHFNDQGAHEYVLGDVAALRG 66

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
           D+P    +  A FPC   S AG
Sbjct: 67 ADLPAGLSLAWASFPCTDLSLAG 89


>gi|328710652|ref|XP_001949338.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like
          [Acyrthosiphon pisum]
          Length = 328

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +++ + F GIGG+   L++  N  N E   + +IN  +   Y+  FP+T +   +I  + 
Sbjct: 1  MRVIEFFSGIGGMHFALKEC-NLENFEVVLAVDINTVANAVYRHFFPSTNLRDLNILSLS 59

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
           +  D    D+LL   PCQPF++ G
Sbjct: 60 PEQFDAYHPDILLMSPPCQPFTRNG 84


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
          Length = 561

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAK 58
          MLK+  LF GIG     L+        E     E++ Y+VK+Y +          GDI K
Sbjct: 1  MLKVRTLFSGIGSPERALKDL--QIPYELVDFCEVDKYAVKSYCSVHGVSEEKNLGDITK 58

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +++P  D+L+ GFPC   S AG
Sbjct: 59 VWGRNLPYADLLVWGFPCPDISVAG 83


>gi|188581100|ref|YP_001924545.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
 gi|179344598|gb|ACB80010.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
          Length = 446

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQD 63
          DLF G GG+ L  EQ  F+ R      ++EI+P     ++ NFPN  +    +  +   +
Sbjct: 8  DLFSGAGGLSLGFEQAGFDVRA-----AAEIDPVHAAVHKFNFPNCAVLARSVVGLTAAE 62

Query: 64 IPDH---------DVLLAGFPCQPFSQAG 83
          I +          DV+  G PCQ FS  G
Sbjct: 63 IREAAALGPSDRVDVVFGGPPCQGFSMIG 91


>gi|325969823|ref|YP_004246015.1| DNA-cytosine methyltransferase [Vulcanisaeta moutnovskia 768-28]
 gi|323709026|gb|ADY02513.1| DNA-cytosine methyltransferase [Vulcanisaeta moutnovskia 768-28]
          Length = 329

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G GG      + F     +     EI+  + +TY  NFP+  ++  DI  I+ +
Sbjct: 5  VIDLFAGAGG----FSRGFLDAGFDVVLGIEIDINAARTYSYNFPDAVMLVDDIKNIRGE 60

Query: 63 DIPDH-----DVLLAGFPCQPFSQ 81
          D+  +     DV++ G PC+ F++
Sbjct: 61 DVIKYIGDKPDVVIGGSPCEAFTE 84


>gi|315656923|ref|ZP_07909810.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492878|gb|EFU82482.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 503

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L  +       ++  ++SE++P++++  + N P     GDI  +  
Sbjct: 4  LTLGSLFDGSGGFPLAAKMV----GIKPMWASEVDPFAIRVTKKNLPEVRHVGDINLLDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 60 GRLQPVDVITFGSPCQDLSIAG 81


>gi|329890824|ref|ZP_08269167.1| cytosine-specific methyltransferase NlaX [Brevundimonas diminuta
          ATCC 11568]
 gi|328846125|gb|EGF95689.1| cytosine-specific methyltransferase NlaX [Brevundimonas diminuta
          ATCC 11568]
          Length = 395

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
          M    + F G G  R  L   +      C F+++ +     TYQAN+     L  GDI  
Sbjct: 1  MADFYEFFAGAGMARAGLGDGWT-----CQFANDFDGKKGLTYQANWGTGGELHVGDIRN 55

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          ++TQ +P + D++   FPCQ  S AG
Sbjct: 56 VETQQLPGEADLIWGSFPCQDLSLAG 81


>gi|60098349|emb|CAH65005.1| hypothetical protein RCJMB04_1a16 [Gallus gallus]
          Length = 102

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++    +   
Sbjct: 4  LRVLELYSGIGGMHQALKESCI--CAEVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
          +K  D    D++L   PCQPF+++
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTRS 85


>gi|320007884|gb|ADW02734.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 660

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD-- 63
           DLF G GG+ L LE+           + + +  +++T+ ANFP   +  D+     +D  
Sbjct: 46  DLFSGAGGLSLGLERA----GWTVAAAVDFDQRALRTHAANFPGMSLHMDLGNPDERDRL 101

Query: 64  ----IPDH-DVLLAGFPCQPFSQAG 83
                P   D++  G PCQPFS+AG
Sbjct: 102 VEMLAPAKIDLVAGGPPCQPFSRAG 126


>gi|288919495|ref|ZP_06413826.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
 gi|288349098|gb|EFC83344.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
          Length = 642

 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
           L + DLF G GG+ L LEQ      +      + +P + +T++ +F    +  D++    
Sbjct: 31  LLVADLFSGAGGLSLGLEQA----GLRVVLGVDHDPEATETHRHHFAGLTLDQDLSDPGR 86

Query: 59  -------IKTQDIPDHDVLLAGFPCQPFSQAG 83
                  I++  +   DV++ G PCQPFS+AG
Sbjct: 87  VDEIAGLIRSLRL---DVVVGGPPCQPFSRAG 115


>gi|326564851|gb|EGE15057.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 103P14B1]
          Length = 288

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ- 62
          I  LF GIGG  +  E+   H +    +  EINP         FP+   F D+     + 
Sbjct: 16 IGSLFAGIGGFDVGFEKAGFHTS----WQVEINPVCRAVLSDRFPHAKQFADVKTCLPEL 71

Query: 63 -DIPDH---DVLLAGFPCQPFSQAG 83
            +P+    DV+  GFPCQ  S AG
Sbjct: 72 LSLPNGGQVDVIAGGFPCQDVSVAG 96


>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          canadensis MIT 98-5491]
 gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
          MIT 98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
          MIT 98-5491]
          Length = 589

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M +I DLFCG GG    LEQ   ++N +     +    ++ T+  NF   + I GDI   
Sbjct: 1  MYRILDLFCGAGGFSYGLEQ---NKNFKTVIGLDFEKAAIDTFNHNFKQAIGICGDITNK 57

Query: 60 KTQDIPDH-------DVLLAGFPCQPFSQAG 83
          + +D   +       ++++ G PCQ FS  G
Sbjct: 58 EVKDKVVNLAKELKVNMVIGGPPCQGFSLKG 88


>gi|319936414|ref|ZP_08010830.1| cytosine-specific methyltransferase [Coprobacillus sp. 29_1]
 gi|319808529|gb|EFW05081.1| cytosine-specific methyltransferase [Coprobacillus sp. 29_1]
          Length = 418

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTF----NHRNVE-----CFFSSEINPYSVKTYQANFPNTLIFG 54
          + +LF G+GG R+ L        N R +E       ++++  P S K   A       FG
Sbjct: 5  VVELFAGVGGFRVGLNHITGFDENGRAIENGEWNFVWANQWEP-STKVQHAFDCYCKRFG 63

Query: 55 -------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                 DI+ +   DIP+H +L+ GFPCQ +S A
Sbjct: 64 NENHSNVDISLVNKSDIPNHTLLVGGFPCQDYSVA 98


>gi|115443362|ref|XP_001218488.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188357|gb|EAU30057.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 2106

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 14  IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QD 63
           +R   E+ F  R++   FS+EI P+     + NF    IF D+A++K           + 
Sbjct: 135 LRTHFERNFEFRHL---FSAEIVPFKQAYIERNFHPPFIFRDVAELKDRVAQTAYGSLEK 191

Query: 64  IPDH-DVLLAGFPCQPFS 80
           IP + D+L+AGF C  FS
Sbjct: 192 IPKNADILIAGFSCVDFS 209


>gi|167461724|ref|ZP_02326813.1| site-specific DNA-methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 345

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 15/87 (17%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  + T     +E     E   +  +  + ++P+  I+ D+  + T+++ +
Sbjct: 6  LFSGIGGIDLAAKWT----GIETVAFCEKESFPQQVLRKHWPDIPIYDDVCAL-TREVLE 60

Query: 67 HDVLL----------AGFPCQPFSQAG 83
           D ++          AG+PCQPFS AG
Sbjct: 61 QDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|119026251|ref|YP_910096.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765835|dbj|BAF40014.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 424

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR----------NVECFFSSEINP-------YSVKTYQ 44
           +K+ +LF G+GG RL L+   N +          N    +++   P       ++ + Y+
Sbjct: 5   IKVVELFAGVGGFRLGLDGYSNPKYPDFEMKPAGNFHTVWANNWEPDGRPTKQFAWRCYE 64

Query: 45  ANF-PNTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA +  Q      ++P+ D+L+ GFPCQ +S A
Sbjct: 65  KRFGEGSCVNEDIAVVVEQIKNGERELPEFDMLVGGFPCQDYSVA 109


>gi|315644199|ref|ZP_07897369.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
 gi|315280574|gb|EFU43863.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
          Length = 485

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------------QTFN---HRNV-ECFFSSEINP 37
             +  LF G GG+ +  E                      FN   H+++    +++++  
Sbjct: 57  FNLVSLFSGCGGLDMGFELAGLAAVIGEEAAMEAFKDKDKFNEVRHKSIFHTIYTNDLFT 116

Query: 38  YSVKTYQANFPNTLI--FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + ++Y+ NFP +++    DI K+K  + P  DV++ GFPC  FS+AG
Sbjct: 117 EANESYKINFPQSVVQHRKDIRKVK--NFPKADVVVGGFPCPGFSEAG 162


>gi|18313899|ref|NP_560566.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
 gi|18161467|gb|AAL64748.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 18/94 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------- 47
           ++  LF G GG+ L  + +  +   +  F++++N Y+  TY  NF              
Sbjct: 4  FRVVSLFSGAGGLDLGFKMSGMY---QIIFANDVNLYATTTYAKNFEMKLLKCGGLTEAE 60

Query: 48 PNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFS 80
          PN ++  D+ K+    +  + DV++ G PCQ FS
Sbjct: 61 PNVVLSCDVEKVLFSPLAGEADVVVGGPPCQDFS 94


>gi|157164649|ref|YP_001466261.1| putative two-component sensor [Campylobacter concisus 13826]
 gi|112801493|gb|EAT98837.1| modification methylase HphIA (Cytosine-specificmethyltransferase
           HphIA) (M.HphIA) (M.Hphi(C)) [Campylobacter concisus
           13826]
          Length = 489

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIK 60
           I DLFCG GG        F+        +++I+  +++TY  N P   ++ I  D  K+ 
Sbjct: 118 IIDLFCGAGG----FSYGFSKMGYNILLANDIDKDALRTYSFNHPEINSSRIINDDVKLI 173

Query: 61  TQDIPDH-----DVLLAGFPCQPFSQAG 83
           +Q+I  +     D+++ G PCQ FS A 
Sbjct: 174 SQNIHKYVNLQVDMIIGGPPCQSFSSAN 201


>gi|294463393|gb|ADE77228.1| unknown [Picea sitchensis]
          Length = 380

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++ + + GIGG+R  LEQ+  H + VE F   +IN  + + Y+ NF ++   G+I  + 
Sbjct: 12 FRVLEFYSGIGGMRFSLEQSGIHAKVVEAF---DINNIANEVYKHNFGHSPYQGNIQSLT 68

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
             +     +  L   PCQP+++ G
Sbjct: 69 ASQLDKFRANAWLLSPPCQPYTRQG 93


>gi|12583593|emb|CAC27339.1| Sth368IM methyltranferase [Streptococcus thermophilus]
 gi|15485439|emb|CAC67533.1| M.Sth368I methyltransferase [Streptococcus thermophilus]
          Length = 421

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQT----FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--- 54
          + + +LF G+GG R+ LE +    F  R    +  S  +  + + Y  +FP++   G   
Sbjct: 1  MNVLELFAGVGGFRIGLENSDKNFFKTRWSNQWEPSRKSQDAFEVYNYHFPDSENIGYSI 60

Query: 55 -DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+  K   + D D+++ GFPCQ +S A
Sbjct: 61 SDISDEKFASM-DADMIVGGFPCQDYSVA 88


>gi|2895947|gb|AAC40130.1| putative DNA cytosine methyltransferase DNMT2 [Mus musculus]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGIS 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +D      +++L   PCQPF++ G
Sbjct: 62 LEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|326921696|ref|XP_003207092.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Meleagris
          gallopavo]
          Length = 398

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++    +   
Sbjct: 4  LRVLELYSGIGGMHQALKESC--VCAEVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +K  D    D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTRIG 86


>gi|157952870|ref|YP_001497762.1| hypothetical protein NY2A_B566R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123097|gb|ABT14965.1| hypothetical protein NY2A_B566R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDI 56
           +K   LF G GG  L ++       +E     E +  ++ T++ NF       + + GDI
Sbjct: 19  MKAISLFAGAGGDSLGMKMA----GIEVVAFLENDTDAIYTHKRNFDKCHHIGSSVGGDI 74

Query: 57  AKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
            KI  ++     D D++ AGFPCQ FS AG
Sbjct: 75  TKIPDEEFKKYGDVDIIFAGFPCQGFSNAG 104


>gi|229183237|ref|ZP_04310467.1| Site-specific DNA-methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600376|gb|EEK57966.1| Site-specific DNA-methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 592

 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIF 53
           KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P     
Sbjct: 14  KIIDLFAGAGGLSNGFEQT---GRFEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSEI 70

Query: 54  GDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
            DI+ I   +        P   V++ G PCQ FS A
Sbjct: 71  SDISSINFHEFMMQKGIDPSETVVIGGPPCQGFSNA 106


>gi|218244975|ref|YP_002370346.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165453|gb|ACK64190.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 423

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L + +LF G GG+ L LE       ++     EI+   V T Q N P   I   D+ KI 
Sbjct: 73  LSVIELFAGCGGMALGLENA----GLKTELLVEIDRDCVNTLQKNRPYWPILQEDVTKID 128

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
            +      D++  GFPCQ FS AG
Sbjct: 129 FRSYQGKIDIVSGGFPCQAFSYAG 152


>gi|163855343|ref|YP_001629641.1| putative DNA-cytosine methyltransferase [Bordetella petrii DSM
          12804]
 gi|163259071|emb|CAP41370.1| putative DNA-cytosine methyltransferase [Bordetella petrii]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQ 81
           +E  + +EI P+        +P     GD+A I  Q     +P  D+L+ G PCQ FS 
Sbjct: 34 GLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMAAIARQVRAGTVPAPDILVGGTPCQSFSV 93

Query: 82 AG 83
          AG
Sbjct: 94 AG 95


>gi|26341152|dbj|BAC34238.1| unnamed protein product [Mus musculus]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGIS 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +D      +++L   PCQPF++ G
Sbjct: 62 LEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|161016803|ref|NP_034197.3| tRNA (cytosine-5-)-methyltransferase [Mus musculus]
 gi|20141317|sp|O55055|TRDMT_MOUSE RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2; AltName: Full=DNA methyltransferase
          homolog MmuIIP; Short=DNA MTase homolog MmuIIP;
          Short=M.MmuIIP; AltName: Full=Met-2
 gi|2627433|gb|AAC53529.1| putative DNA methyltransferase [Mus musculus]
 gi|56971714|gb|AAH87892.1| TRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|123857912|emb|CAM15443.1| tRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|123858289|emb|CAM16855.1| tRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|148676105|gb|EDL08052.1| DNA methyltransferase 2 [Mus musculus]
          Length = 415

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGIS 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +D      +++L   PCQPF++ G
Sbjct: 62 LEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|299065029|emb|CBJ36133.1| DNA-cytosine methyltransferase [Ralstonia solanacearum CMR15]
          Length = 385

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
          + F G G  R  L + +     +C F+++ +     TY+ N+  + L+ GD+ ++K  ++
Sbjct: 6  EFFAGGGMARAGLGEGW-----QCLFANDFDHKKGVTYRQNWGEDELLTGDVRQVKPNNL 60

Query: 65 PDHDVLLAG-FPCQPFSQAG 83
          PD   L+ G FPCQ  S AG
Sbjct: 61 PDRANLIWGSFPCQDLSLAG 80


>gi|213972219|ref|ZP_03400299.1| cytosine-specific DNA methylase [Pseudomonas syringae pv. tomato
          T1]
 gi|289626827|ref|ZP_06459781.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|301386398|ref|ZP_07234816.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062510|ref|ZP_07254051.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
 gi|213923026|gb|EEB56641.1| cytosine-specific DNA methylase [Pseudomonas syringae pv. tomato
          T1]
 gi|330870292|gb|EGH05001.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 382

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M    + F G G  R  L   +     +C F+++ +P    +Y  N+  + L  GD+A +
Sbjct: 1  MANFYEFFAGGGMARAGLGPDW-----QCMFANDFDPKKAASYATNWGDDHLRVGDVAAL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
           T ++P   D+  A FPCQ  S AG
Sbjct: 56 TTTELPGVVDLAWASFPCQDLSLAG 80


>gi|284052894|ref|ZP_06383104.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835469|gb|ABB52095.1| Mod [Arthrospira platensis]
 gi|291565921|dbj|BAI88193.1| type II DNA modification methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 314

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          ++  DLF G GG+ L     F +   +   + EI   ++K YQ NF + +   D++K   
Sbjct: 1  MRTIDLFAGCGGLSLG----FQNAGFDMKAAFEIWKPAIKVYQRNFSHPIFQVDLSKESV 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I T      +V++ G PCQ FS AG
Sbjct: 57 INTLGEWKPEVIIGGPPCQDFSSAG 81


>gi|332158207|ref|YP_004423486.1| modification methylase [Pyrococcus sp. NA2]
 gi|331033670|gb|AEC51482.1| modification methylase [Pyrococcus sp. NA2]
          Length = 310

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG  L     F     +   + E      KTY  NFP   +I  DI  +   
Sbjct: 12 VIDLFAGAGGFSLG----FKLAGFKIISAIENFKPKAKTYSQNFPEVNVIVSDIKLVNPL 67

Query: 63 DIPDH-DVLLAGFPCQPFS 80
          D+ D  DV++ G PC+PF+
Sbjct: 68 DVADKVDVIIGGPPCEPFT 86


>gi|145207311|gb|AAI14323.2| TRNA aspartic acid methyltransferase 1 [Danio rerio]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  +   Y+ NFP T L+   I  + 
Sbjct: 7  LRVFELYSGIGGMHYALKESL--VPAEVVAAVDVNTTANLIYKHNFPTTQLLPKTIEGMT 64

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           QD    + D++L   PCQPF++ G
Sbjct: 65 LQDFDRLNFDMILMSPPCQPFTRIG 89


>gi|90592696|ref|YP_529611.1| hypothetical protein CDBPCV119_gp60 [Clostridium phage phi CD119]
 gi|71482543|gb|AAX53484.1| hypothetical protein [Clostridium phage phi CD119]
          Length = 260

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 11 IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQDIPDH 67
          IGG RL +E+   H+   C    E + ++  +Y A      +     DI +I+T++IP  
Sbjct: 18 IGGFRLGMEKA-GHK---CLGHCEYDKFANLSYNAMHKPKEDEWFERDIREIRTENIPRA 73

Query: 68 DVLLAGFPCQPFSQAG 83
          DV   GFPCQ  S AG
Sbjct: 74 DVWCFGFPCQDISVAG 89


>gi|89941477|ref|NP_001018153.1| tRNA (cytosine-5-)-methyltransferase [Danio rerio]
 gi|62433271|dbj|BAD95483.1| DNA methyltransferase [Danio rerio]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  +   Y+ NFP T L+   I  + 
Sbjct: 7  LRVFELYSGIGGMHYALKESL--VPAEVVAAVDVNTTANLIYKHNFPTTQLLPKTIEGMT 64

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           QD    + D++L   PCQPF++ G
Sbjct: 65 LQDFDRLNFDMILMSPPCQPFTRIG 89


>gi|302534627|ref|ZP_07286969.1| predicted protein [Streptomyces sp. C]
 gi|302443522|gb|EFL15338.1| predicted protein [Streptomyces sp. C]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +L+I +L  G GG+ + +      R     + +E  P         +P+    GDI +I 
Sbjct: 25  LLEILELCAGYGGLGMAVAPLVGGR---IAYVAESAPGPSAVLAERYPDAPNLGDIREID 81

Query: 61  -TQDIPDHDVLLAGFPCQPFSQAG 83
            TQ +   DV+ AGFPCQ  S AG
Sbjct: 82  WTQLVGKVDVITAGFPCQDISIAG 105


>gi|326381717|ref|ZP_08203411.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326199964|gb|EGD57144.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK---- 60
          DLF G GG+   L+Q+     +EC  +S+    ++KTY  N P+   I  D+ K+     
Sbjct: 13 DLFAGAGGLSWGLQQS----GMECLLASDYWGDALKTYSHNMPDHPTIECDVRKLTMPKL 68

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           Q +P+  D ++ G PCQ +S  G
Sbjct: 69 AQLLPEKPDWVVGGPPCQGYSTVG 92


>gi|26325124|dbj|BAC26316.1| unnamed protein product [Mus musculus]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGIGGMHHALRKS--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLSKTIEGIS 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +D      +++L   PCQPF++ G
Sbjct: 62 LEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|237739124|ref|ZP_04569605.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
 gi|229423724|gb|EEO38771.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
          Length = 361

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           LK  +LF G GG+ L +E+  FN   +      EI+  +  T + N PN  +I  +IA I
Sbjct: 29  LKAIELFAGAGGLALGVEKAGFNTIGL-----IEIDKNACNTLKLNRPNWNVINENIANI 83

Query: 60  KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             +++ D         D+L  G PCQ FS AG
Sbjct: 84  SLKNLEDFFSIKKGELDLLSGGAPCQAFSYAG 115


>gi|52788777|gb|AAU87368.1| MnlI m5C-methyltransferase [Moraxella nonliquefaciens]
          Length = 351

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK- 58
          + I DLFCG GG+    EQ  FN          + N  ++ TYQ N  N+ I  GD+   
Sbjct: 1  MNILDLFCGAGGLSYGFEQAGFN-----AVLGVDFNEKALDTYQKNHKNSQILCGDLTSC 55

Query: 59 ------IKTQDIPDHDVLLAGFPCQPFSQAG 83
                +K     +   +L G PCQ FS  G
Sbjct: 56 ELKDEIVKIAKTNNVRAVLGGPPCQGFSLKG 86


>gi|67514595|ref|NP_001020002.1| tRNA (cytosine-5-)-methyltransferase [Gallus gallus]
 gi|66766328|dbj|BAD99025.1| DNA methyltransferase 2 [Gallus gallus]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++    +   
Sbjct: 4  LRVLELYSGIGGMHQALKESC--ICAEVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +K  D    D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTRIG 86


>gi|79835453|gb|ABB52085.1| Mod [Arthrospira platensis]
 gi|291569776|dbj|BAI92048.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 429

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
           + D F G GG  L  +    H       + EI+ ++ +T+Q N PN  LI GDI  I  +
Sbjct: 42  VLDTFAGAGGFSLGFQWAGAH----IIGAIEIDEWAGETFQFNHPNAHLIKGDIKGITDE 97

Query: 63  DIPDH------DVLLAGFPCQPFS 80
            I D        ++L G PCQ FS
Sbjct: 98  QILDTFGEIKPHIILGGIPCQGFS 121


>gi|119873163|ref|YP_931170.1| DNA-cytosine methyltransferase [Pyrobaculum islandicum DSM 4184]
 gi|119674571|gb|ABL88827.1| DNA-cytosine methyltransferase [Pyrobaculum islandicum DSM 4184]
          Length = 319

 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M  + D+F G GG  L     F     +   + EI+  + +TY AN  NT++   D+A +
Sbjct: 1  MYNVADIFSGAGGFGLG----FRKAGFKIKVAVEIDRDAARTYSANHQNTVVLQEDVANV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQA 82
            +D+  +     +++   PC+PF+ A
Sbjct: 57 DYKDLVKYGGEIKIIIGSPPCEPFTAA 83


>gi|260579295|ref|ZP_05847178.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
 gi|258602594|gb|EEW15888.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
          Length = 372

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           L   ++  G GG  L LE   F HR V      E++ ++V T +AN P   ++ GD+   
Sbjct: 36  LTSVEICAGAGGQALGLEAAGFIHRAV-----VELDGHAVSTLRANRPAWNIVHGDVLDF 90

Query: 60  KTQDIPDH-DVLLAGFPCQPFSQAG 83
                 D  D+L  G PC PFS AG
Sbjct: 91  DISPFADDLDLLAGGVPCPPFSIAG 115


>gi|293596744|ref|ZP_05263998.2| DNA-methyltransferase [Listeria monocytogenes J2818]
 gi|293592003|gb|EFG00338.1| DNA-methyltransferase [Listeria monocytogenes J2818]
          Length = 327

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 8  MVQILELFGGIGAPRKALENL--GVDIKSLDYVEILPFAVQAYNNIFSNDYVAQDVTKWN 65

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 66 MS----VDLLIHGSPCQDWSKNG 84


>gi|23428398|gb|AAL15430.1| DNA methyltransferase A [Moraxella nonliquefaciens]
          Length = 351

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK- 58
          + I DLFCG GG+    EQ  FN          + N  ++ TYQ N  N+ I  GD+   
Sbjct: 1  MNILDLFCGAGGLSYGFEQAGFN-----AVLGVDFNEKALDTYQKNHKNSQILCGDLTSC 55

Query: 59 ------IKTQDIPDHDVLLAGFPCQPFSQAG 83
                +K     +   +L G PCQ FS  G
Sbjct: 56 ELKDEIVKIAKTNNVRAVLGGPPCQGFSLKG 86


>gi|68536951|ref|YP_251655.1| putative DNA restriction-modification system, DNA methylase
          [Corynebacterium jeikeium K411]
 gi|68264550|emb|CAI38038.1| putative DNA restriction-modification system, DNA methylase
          [Corynebacterium jeikeium K411]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          L   ++  G GG  L LE   F HR V      E++ ++V T +AN P   ++ GD+   
Sbjct: 5  LTSVEICAGAGGQALGLEAAGFIHRAV-----VELDGHAVSTLRANRPAWNIVHGDVLDF 59

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
                D  D+L  G PC PFS AG
Sbjct: 60 DISPFADDLDLLAGGVPCPPFSIAG 84


>gi|325564165|gb|ADZ31422.1| M.PsuNI [Pseudomonas stutzeri]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 19/89 (21%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI------ 59
           LF G GG    +E +     V+   + E++ ++ +TY+ NFP+T +F GD+         
Sbjct: 23  LFSGCGGFCEGIENS----GVKVKVAVELDKFACQTYRHNFPSTPLFEGDVHNFLADGSG 78

Query: 60  -----KTQDIPDHDVLLAGFPCQPFSQAG 83
                + QD+   D++  G PCQ +SQ G
Sbjct: 79  HEDEYRLQDV---DLVFGGPPCQGYSQIG 104


>gi|299820316|gb|ADJ54326.1| C5-cytosine specific methylase [archaeon enrichment culture clone
          1(2010)]
          Length = 396

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ DL+ G+GG+ L +      + +      EIN  +V TY  N          AK   
Sbjct: 4  LKVLDLYSGLGGLSLGVAIALRPKEI---IGLEINKNAVDTYNLNLSRY-----NAKAFR 55

Query: 62 QDI----PD--HDVLLAGFPCQPFSQA 82
          QD+    P+  +D+++ G PC+PFS A
Sbjct: 56 QDVLQWQPEGHYDLIIGGSPCEPFSIA 82


>gi|328947595|ref|YP_004364932.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447919|gb|AEB13635.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-- 64
            F G  G+   +E+      +    +SEI P + KT   N PN  + GDI     +DI  
Sbjct: 80  FFSGAMGLDYGIEKA----GIHPLLASEIEPNARKTILLNRPNIGLIGDINNYSAKDIRK 135

Query: 65  -------PDHDVLLAGFPCQPFSQAG 83
                   + D+++ G PCQ FS AG
Sbjct: 136 FANISEKQEIDLVIGGPPCQAFSTAG 161


>gi|319787207|ref|YP_004146682.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis
          11-1]
 gi|317465719|gb|ADV27451.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis
          11-1]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI 64
          DLF G GG+ L  EQ       +   + EI+P     +  NFP+  +    +  +  Q I
Sbjct: 8  DLFAGAGGLSLGFEQA----GFDVVAAVEIDPVHAAVHAYNFPHCAVLPRSVTDLTAQHI 63

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           D         DV+  G PCQ FS  G
Sbjct: 64 RDAAGIGTRKVDVVFGGAPCQGFSLIG 90


>gi|315230475|ref|YP_004070911.1| DNA-cytosine methyltransferase [Thermococcus barophilus MP]
 gi|315183503|gb|ADT83688.1| DNA-cytosine methyltransferase [Thermococcus barophilus MP]
          Length = 321

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M  I DLF G GG      + F     +   + E       TY+ NFP   ++  DI +I
Sbjct: 1  MYTIIDLFAGAGG----FSRGFKEAGFKILAAIENFAPKADTYKFNFPEVRMYVEDIKRI 56

Query: 60 KT----QDIPDHDVLLAGFPCQPFSQA 82
           T    +D+   DV++ G PC+P++ A
Sbjct: 57 HTIDVMRDVGVPDVIIGGPPCEPYTAA 83


>gi|313891845|ref|ZP_07825450.1| putative modification methylase HhaI [Dialister microaerophilus
          UPII 345-E]
 gi|313119839|gb|EFR43026.1| putative modification methylase HhaI [Dialister microaerophilus
          UPII 345-E]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIKTQD 63
          DLF GIGG    LE+      ++C    E + ++ K+Y+A +    ++   DI K +   
Sbjct: 9  DLFSGIGGFHSGLEKV----GMKCVGWCEKDKFAQKSYRALYDTERLWFADDIRKCRGWG 64

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P+  +   GFPCQ  S AG
Sbjct: 65 MPNATLWSFGFPCQDISIAG 84


>gi|317481261|ref|ZP_07940332.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902594|gb|EFV24477.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
          Length = 461

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
          E  F  E+N +     +  FPN+  + DIAK   +      D+L  GFPCQPFS AG
Sbjct: 25 ENAFHCEVNDFCNIILKYWFPNSEHYEDIAKTDFKKWRGKIDILTGGFPCQPFSVAG 81


>gi|299142721|ref|ZP_07035850.1| C-5 cytosine-specific DNA methylase superfamily [Prevotella oris
          C735]
 gi|298575750|gb|EFI47627.1| C-5 cytosine-specific DNA methylase superfamily [Prevotella oris
          C735]
          Length = 398

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG   L        +NV   F  EIN +        FPN++ + +I    
Sbjct: 4  IIRHASLFSGIGAPEL-AALWLGWQNV---FHCEINEFCNTILNYWFPNSINYENIKTTN 59

Query: 61 -TQDIPDHDVLLAGFPCQPFSQAG 83
           +Q     D+L  GFPCQPFS AG
Sbjct: 60 FSQWQGKIDILTGGFPCQPFSSAG 83


>gi|296501658|ref|YP_003663358.1| type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
 gi|296322710|gb|ADH05638.1| Type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
          Length = 602

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 19/96 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIF 53
           KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P     
Sbjct: 24  KIIDLFAGAGGLSNGFEQT---GRFEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSEI 80

Query: 54  GDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
            DI+ I   +        P   V++ G PCQ FS A
Sbjct: 81  SDISSIDFNEFIMQKGIDPSETVVIGGPPCQGFSNA 116


>gi|222053814|ref|YP_002536176.1| DNA-cytosine methyltransferase [Geobacter sp. FRC-32]
 gi|221563103|gb|ACM19075.1| DNA-cytosine methyltransferase [Geobacter sp. FRC-32]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M    + F G G  R+ L + +     EC F+++ +P    +Y+  F   +  +  D+AK
Sbjct: 1  MKTFYEFFAGGGMARIGLGKGW-----ECVFANDFDPKKAISYRTYFRGNDHFVVEDVAK 55

Query: 59 IKT-QDIPDHDVLLAGFPCQPFSQAG 83
          I+T Q +   D+  A FPCQ  S AG
Sbjct: 56 IQTSQLLGTADLTWASFPCQDLSLAG 81


>gi|291549830|emb|CBL26092.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I   D+
Sbjct: 81  ELFAGAGGLALGIEKA----GFETLGLVEFDKDAAESLKTNRPNWRVIHDDIANISCMDL 136

Query: 65  PDH--------DVLLAGFPCQPFSQAG 83
            ++        D+L  G PCQ FS AG
Sbjct: 137 EEYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|284928852|ref|YP_003421374.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
 gi|284809311|gb|ADB95016.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          DLF G+GG+ L  EQ       +   S EI+P     +  NFP  T I  DI+ I  + I
Sbjct: 10 DLFAGVGGMTLGFEQA----GFDVLGSVEIDPIHCAAHHYNFPFWTTICSDISIINAKTI 65

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         DV+  G PCQ FS  G
Sbjct: 66 RNLSCIGNREIDVVFGGPPCQGFSLIG 92


>gi|254901064|ref|ZP_05260988.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
          J0161]
          Length = 320

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENL--GVDIKSLDYVEILPFAVQAYNNIFSNDYVAQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|293369629|ref|ZP_06616207.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292635333|gb|EFF53847.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 4  ITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +LF GIGG    LE    TF+       + SEI+ +++  ++ NFP     G +  I 
Sbjct: 3  LLELFSGIGGFSKGLEAAGYTFDK-----VYFSEIDKHAIANFKYNFPYAEHIGTVTNIG 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             I    ++  G PCQ FS  G
Sbjct: 58 EVGIERPHIVTFGSPCQNFSAIG 80


>gi|53712640|ref|YP_098632.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Bacteroides fragilis YCH46]
 gi|52215505|dbj|BAD48098.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Bacteroides fragilis YCH46]
          Length = 296

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 4  ITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + +LF GIGG    LE    TF+       + SEI+ +++  ++ NFP     G +  I 
Sbjct: 3  LLELFSGIGGFSKGLEAAGYTFDK-----VYFSEIDKHAIANFKYNFPYAEHIGTVTNIG 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             I    ++  G PCQ FS  G
Sbjct: 58 EVGIERPHIVTFGSPCQNFSAIG 80


>gi|209523295|ref|ZP_03271851.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209496446|gb|EDZ96745.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 387

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T+ I
Sbjct: 12 DLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREISTEQI 67

Query: 65 PDH------DVLLAGFPCQPFSQAG 83
           +       +++  G PCQ FS  G
Sbjct: 68 RELIGDRHINLICGGPPCQGFSTIG 92


>gi|209546991|ref|YP_002278909.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538235|gb|ACI58169.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 34 EINPYSVKTYQANFPNTLIFG-DIAKIKTQDI-PDHD--VLLAGFPCQPFSQA 82
          E +P +  TY AN P   + G DIAK+ T D+ P H   VL  G PCQ FS +
Sbjct: 29 ENHPSACLTYSANHPGATLLGTDIAKVATIDVGPRHQPLVLFGGPPCQGFSTS 81


>gi|328955052|ref|YP_004372385.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
 gi|328455376|gb|AEB06570.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
          Length = 353

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
          + F G G +   L   F  R+V   ++++I+      Y+AN  P+ L  GDI+++   D+
Sbjct: 10 EFFAGSGLVGCGLAPWF--RSV---WANDISERKAAVYRANLDPSVLHVGDISRVSGADL 64

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P   +  A FPCQ  S AG
Sbjct: 65 PAASLSWASFPCQDLSLAG 83


>gi|145593130|ref|YP_001157427.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
 gi|145302467|gb|ABP53049.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
          Length = 652

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 17/88 (19%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--------- 56
           DLF G GG+ L L +           +++ +P SV+T++ ++P   +  D+         
Sbjct: 55  DLFSGAGGLSLGLTEA----GFRVVLAADRDPESVETHRHHYPGLTLDYDLGESANIRRI 110

Query: 57  -AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            A +K   I   ++L  G PCQPFS+AG
Sbjct: 111 AALVKEAGI---ELLTGGPPCQPFSRAG 135


>gi|77409601|ref|ZP_00786278.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          COH1]
 gi|77171795|gb|EAO74987.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          COH1]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  +LF G GG+ L +E+       +     E +  + +T + N PN  +I  D+A I 
Sbjct: 1  MKSIELFAGAGGLALGIEKA----GFDTIGLVEFDSAASETLKYNRPNWNVIHDDVANIS 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
            D+ ++        D+L  G PCQ FS AG
Sbjct: 57 KLDLEEYFLIKKGELDLLSGGAPCQSFSYAG 87


>gi|291571391|dbj|BAI93663.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T+ I
Sbjct: 11 DLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREISTEQI 66

Query: 65 PDH------DVLLAGFPCQPFSQAG 83
           +       +++  G PCQ FS  G
Sbjct: 67 RELIGDRHINLICGGPPCQGFSTIG 91


>gi|79835459|gb|ABB52089.1| Mod [Arthrospira platensis]
          Length = 390

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T+ I
Sbjct: 11 DLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREISTEQI 66

Query: 65 PDH------DVLLAGFPCQPFSQAG 83
           +       +++  G PCQ FS  G
Sbjct: 67 RELIGDRHINLICGGPPCQGFSTIG 91


>gi|310815203|ref|YP_003963167.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
 gi|308753938|gb|ADO41867.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
          Length = 437

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   + EI+P     ++ NFP+  +I   +  +  +DI
Sbjct: 8  DLFSGAGGMSLGFEQA----GFDVVAAVEIDPVHAAVHKFNFPDCAVIPRSVTDVSGEDI 63

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
                     DV+  G PCQ FS  G
Sbjct: 64 RAEAGIGDQTVDVVFGGAPCQGFSLIG 90


>gi|15894780|ref|NP_348129.1| DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|15024448|gb|AAK79469.1|AE007660_12 DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|325508918|gb|ADZ20554.1| DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum EA 2018]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 50/129 (38%), Gaps = 50/129 (38%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  LF G+GGI L   +T  +R +     +++EI+ Y+ +TY+ NF + LI GDI KI  
Sbjct: 8   VGSLFAGVGGICLGF-KTAEYRGLGYNLIWANEIDEYAGETYRHNFDHNLIAGDIEKIVD 66

Query: 62  QDIPDH-----------------------------------------------DVLLAGF 74
            +I                                                  DVL  GF
Sbjct: 67  LNIIQSEQNRYINIMNEVATDEERIKYKVLIEKCEEEKQIYREKQKQILSSKIDVLNGGF 126

Query: 75  PCQPFSQAG 83
           PCQ FS AG
Sbjct: 127 PCQAFSIAG 135


>gi|320120362|gb|EFE28316.2| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC
          35896]
          Length = 363

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +     ++   ++SEI    +   + +FPN    GDI KIK 
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----HIVPVWASEIEKVPMSITKRHFPNMEHLGDITKIKG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I    ++  G PCQ  S AG
Sbjct: 60 GEITPVHIITFGSPCQNLSLAG 81


>gi|296139305|ref|YP_003646548.1| DNA-cytosine methyltransferase [Tsukamurella paurometabola DSM
          20162]
 gi|296027439|gb|ADG78209.1| DNA-cytosine methyltransferase [Tsukamurella paurometabola DSM
          20162]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAK 58
          +  + F GIG   + LE+     +++  +S++I+P     Y+ +F     +  I GD+A 
Sbjct: 14 RAAEFFAGIGLAGIGLEKA----DIKVAWSNDISPVKYALYEKHFGEREGHRYIVGDLAT 69

Query: 59 IK-TQDIPDHDVLLAGFPCQPFSQAG 83
          ++ +QD  D DV  A FPC   S AG
Sbjct: 70 LEASQDPIDIDVAWASFPCTDLSVAG 95


>gi|67539812|ref|XP_663680.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|40738861|gb|EAA58051.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|259479739|tpe|CBF70236.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_2G09120)
           [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 12/79 (15%)

Query: 14  IRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------Q 62
           ++ +L++ FN   + +  FS+EI PY     + NF   L+F D+A++K           +
Sbjct: 341 VKENLQKYFNRDLDFKHLFSAEIVPYKQAYIERNFRPRLLFRDVAELKDRVARTAYGSLE 400

Query: 63  DIPDH-DVLLAGFPCQPFS 80
            +P + D+L+AGF C  FS
Sbjct: 401 KVPKNADMLIAGFSCVDFS 419


>gi|312114242|ref|YP_004011838.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219371|gb|ADP70739.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 363

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLFCG GG    L   F+    +     + +      ++ N     I  D+A++K ++
Sbjct: 24  VVDLFCGAGG----LSHGFHSEGFDIVAGIDTDETCRYAFEHNNDAPFIRRDVAQLKGRE 79

Query: 64  IPD------HDVLLAGFPCQPFS 80
           I D      H VL+   PCQPFS
Sbjct: 80  IEDLFVPGRHRVLVGCAPCQPFS 102


>gi|42766604|gb|AAS45432.1| At5g25480 [Arabidopsis thaliana]
          Length = 176

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L  +      VE F   EIN  +   YQ NF +    G+I  +  
Sbjct: 16 QVLEFYSGIGGMRYSLMASGIVSEVVEAF---EINDSANDVYQHNFKHRPYQGNIQSLTA 72

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +  D  L   PCQP+++ G
Sbjct: 73 ADLDKYNADAWLLSPPCQPYTRQG 96


>gi|328913308|gb|AEB64904.1| putative DNA (Cytosine-5-)-methyltransferase [Bacillus
          amyloliquefaciens LL3]
          Length = 254

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    NFP   IF D   +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKVLNKNFPGVPIFDDACAVNR 56

Query: 62 QDIPDHDV---------LLAGFPCQPFSQAG 83
          Q + +  V         L  G+PCQ  S  G
Sbjct: 57 QLLEEKGVIEPGGTISILSGGYPCQGESVIG 87


>gi|322505075|emb|CAM39116.2| modification methylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 843

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 52  IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + G+I +I     P HDVL  GFPCQ F++AG
Sbjct: 438 LVGNITEIPNAFFPTHDVLTGGFPCQSFAKAG 469


>gi|317500279|ref|ZP_07958506.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087487|ref|ZP_08336423.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898322|gb|EFV20366.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330410467|gb|EGG89898.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I   D+
Sbjct: 81  ELFAGAGGLALGIEKA----GFEPLGLIEFDKDAAESLKTNRPNWRVIHDDIANISCLDL 136

Query: 65  PDH--------DVLLAGFPCQPFSQAG 83
            D+        D+L  G PCQ FS AG
Sbjct: 137 EDYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|154338798|ref|XP_001565621.1| modification methylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 843

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 52  IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + G+I +I     P HDVL  GFPCQ F++AG
Sbjct: 438 LVGNITEIPNAFFPTHDVLTGGFPCQSFAKAG 469


>gi|46580156|ref|YP_010964.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46449573|gb|AAS96223.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|311233853|gb|ADP86707.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDI 56
          K  DLFCG GG  L       +  +E   + E N Y+  TY+ NF      P  L  GDI
Sbjct: 12 KAVDLFCGAGGFSL----AARNLGIEVVAALENNHYAAATYRHNFIEGSRRPPLLFEGDI 67

Query: 57 AKIKTQDIPDH--------DVLLAGFPCQPFS 80
            I  +             D+++ G PCQ FS
Sbjct: 68 LAISPEAFMQAANLTPGGVDIIMGGPPCQGFS 99


>gi|194098495|ref|YP_002001557.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|239998889|ref|ZP_04718813.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240115566|ref|ZP_04729628.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|240125661|ref|ZP_04738547.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|254493672|ref|ZP_05106843.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440624|ref|ZP_05794440.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268594728|ref|ZP_06128895.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268601236|ref|ZP_06135403.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268684247|ref|ZP_06151109.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043935|ref|ZP_06569651.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|193933785|gb|ACF29609.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|226512712|gb|EEH62057.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548117|gb|EEZ43535.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268585367|gb|EEZ50043.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268624531|gb|EEZ56931.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012398|gb|EFE04387.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|317164179|gb|ADV07720.1| DNA modification methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE+  F+H  +      EI P + +T + N P+  +I GD+   + + 
Sbjct: 7  EICAGAGGQALGLERAGFSHVAL-----IEIEPSACQTLRLNRPDWNVIEGDVRLFQGEG 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+AG
Sbjct: 62 YDGIDLLAGGVPCPPFSKAG 81


>gi|74317828|ref|YP_315568.1| C-5 cytosine-specific DNA methylase [Thiobacillus denitrificans
          ATCC 25259]
 gi|74057323|gb|AAZ97763.1| C-5 cytosine-specific DNA methylase [Thiobacillus denitrificans
          ATCC 25259]
          Length = 382

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L   +     +C F+++ +P    +Y  N+  + L  GD+  +
Sbjct: 1  MPSFYEFFAGGGMARAGLGAEW-----DCLFANDFDPKKAASYAVNWDGDELRVGDVGTL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
             D+P   D+  A FPCQ  S AG
Sbjct: 56 TVPDLPGRADLAWASFPCQDLSLAG 80


>gi|400287|sp|P31033|MTM4_NEIGO RecName: Full=Modification methylase NgoMIV; Short=M.NgoMIV;
          AltName: Full=Cytosine-specific methyltransferase
          NgoMIV
          Length = 312

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE+  F+H  +      EI P + +T + N P+  +I GD+   + + 
Sbjct: 7  EICAGAGGQALGLERAGFSHVAL-----IEIEPSACQTLRLNRPDWNVIEGDVRLFQGEG 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+AG
Sbjct: 62 YDGIDLLAGGVPCPPFSKAG 81


>gi|59801274|ref|YP_207986.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|240014199|ref|ZP_04721112.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae DGI18]
 gi|240016634|ref|ZP_04723174.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA6140]
 gi|240080823|ref|ZP_04725366.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|240112810|ref|ZP_04727300.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae MS11]
 gi|240117858|ref|ZP_04731920.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID1]
 gi|240121762|ref|ZP_04734724.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID24-1]
 gi|240123416|ref|ZP_04736372.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID332]
 gi|240128118|ref|ZP_04740779.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae
          SK-93-1035]
 gi|268596944|ref|ZP_06131111.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268598881|ref|ZP_06133048.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603557|ref|ZP_06137724.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682037|ref|ZP_06148899.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686505|ref|ZP_06153367.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399137|ref|ZP_06643302.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|5051442|emb|CAB44950.1| DNA modification methylase [Neisseria gonorrhoeae]
 gi|5262959|emb|CAB45015.2| DNA modification methylase [Neisseria gonorrhoeae]
 gi|59718169|gb|AAW89574.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|268550732|gb|EEZ45751.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268583012|gb|EEZ47688.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587688|gb|EEZ52364.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622321|gb|EEZ54721.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626789|gb|EEZ59189.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610551|gb|EFF39661.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE+  F+H  +      EI P + +T + N P+  +I GD+   + + 
Sbjct: 7  EICAGAGGQALGLERAGFSHVAL-----IEIEPSACQTLRLNRPDWNVIEGDVRLFQGEG 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+AG
Sbjct: 62 YDGIDLLAGGVPCPPFSKAG 81


>gi|110800293|ref|YP_695463.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
 gi|110674940|gb|ABG83927.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNT-LIFGDIA 57
          + +LF G+GG  L L +     + E  ++++  P     ++ + Y  +FP T  +  DIA
Sbjct: 7  VCELFAGVGGFHLGLSKA--SADWEVLWANQWEPSRKVQHAFECYAKHFPKTNAVNEDIA 64

Query: 58 KIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
           +        +P +++L+ GFPCQ +S A 
Sbjct: 65 LVNENPEAFGLPKYNLLVGGFPCQDYSVAA 94


>gi|284050355|ref|ZP_06380565.1| site-specific DNA-methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 371

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + D F G GG  L  +    H       + EI+ ++ +T+Q N PN  LI GDI  I  +
Sbjct: 1  MLDTFAGAGGFSLGFQWAGAH----IIGAIEIDEWAGETFQFNHPNAHLIKGDIKGITDE 56

Query: 63 DIPDH------DVLLAGFPCQPFS 80
           I D        ++L G PCQ FS
Sbjct: 57 QILDTFGEIKPHIILGGIPCQGFS 80


>gi|20068992|gb|AAM09644.1|AF458984_2 m6 adenine and m5 cytosine DNA methyltransferase [Acinetobacter
           lwoffii]
          Length = 952

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 20/89 (22%)

Query: 6   DLFCGIGGI-----RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
           DLF G GG+     +  L+  F +   +CF S+ I      +++AN P T +I+GDI++ 
Sbjct: 731 DLFAGAGGMSQGMFQAGLKPIFAN---DCFLSACI------SHKANHPETDVIYGDISEA 781

Query: 60  KT-QDIPDH----DVLLAGFPCQPFSQAG 83
            T Q I  +    D+L  G PCQ FSQAG
Sbjct: 782 HTKQKIYQYANKIDILCGGPPCQGFSQAG 810


>gi|262118158|ref|YP_003275928.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
 gi|262088068|gb|ACY24035.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
          Length = 652

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 11/84 (13%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDI-AK 58
           DLF G GG+ L +E+           ++  N Y V+ ++AN P+       LI  ++ A 
Sbjct: 28  DLFSGFGGLTLGIEKA----GFTTILAANHNQYKVEVHEANHPHVQHWIADLINPEVPAY 83

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQA 82
              +D+P  D+L+AG  C   SQA
Sbjct: 84  HSVRDLPAADLLVAGVTCTNHSQA 107


>gi|19718332|ref|NP_604405.1| plasmid encoded methyltransferase Pem [Salmonella enteritidis]
 gi|19526586|gb|AAL87019.1| plasmid encoded methyltransferase Pem [Salmonella enterica subsp.
          enterica serovar Enteritidis]
          Length = 382

 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ++  ++F G GG+   LE   F H         E+N ++  + + NF    +F GDI   
Sbjct: 1  MRSLEIFSGAGGLAKGLELAGFQHVGF-----VELNKHACDSLRLNFDEEKVFQGDIKNY 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              I   D++  G PCQPFS  G
Sbjct: 56 DLSSIDKIDIVAGGPPCQPFSLGG 79


>gi|148826164|ref|YP_001290917.1| modification methylase [Haemophilus influenzae PittEE]
 gi|148716324|gb|ABQ98534.1| modification methylase [Haemophilus influenzae PittEE]
 gi|162532590|gb|ABY16693.1| probable methylase [Haemophilus influenzae]
 gi|309973308|gb|ADO96509.1| Probable cytosine-specific DNA methyltransferase [Haemophilus
           influenzae R2846]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
           +++  +F GIG I   +++   NH   E  F+ +I+P+  K+Y AN+         DI  
Sbjct: 35  IRLATVFSGIGAIEQAMKRLKLNH---EIIFAGDIDPHVKKSYLANYQLSEEHWHSDITT 91

Query: 59  IKTQDIPDH-DVLLAGFPCQPFSQAG 83
                  +  D+L+ G PCQ FS  G
Sbjct: 92  FDATPYREQIDLLVGGSPCQAFSMVG 117


>gi|326772743|ref|ZP_08232027.1| modification methylase XorII [Actinomyces viscosus C505]
 gi|326637375|gb|EGE38277.1| modification methylase XorII [Actinomyces viscosus C505]
          Length = 364

 Score = 40.8 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--I 59
          +++ DLF G GG+      T + R      + E++P +  +Y+A FP T ++    +  +
Sbjct: 6  IRVLDLFAGAGGLTAGF-HTASSR-FRSIAAVEMDPEAAASYRATFPKTEVYAGAIQDWL 63

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
              IP   DV++ G PCQ FS  G
Sbjct: 64 AEGTIPTGVDVVVGGPPCQGFSTLG 88


>gi|238493629|ref|XP_002378051.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220696545|gb|EED52887.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 2055

 Score = 40.8 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 18/89 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           +TD+F       +DL + FN        FS+EI PY  +    NF   L+F D+ ++K  
Sbjct: 144 LTDMF------SIDLRKHFNRDFKFRHLFSAEIVPYKQRYIDNNFHPRLLFRDVTQLKDR 197

Query: 62  ---------QDIP-DHDVLLAGFPCQPFS 80
                    + +P + D+L+AGF C  FS
Sbjct: 198 VAQTAYGSLEKVPRNPDMLIAGFSCVDFS 226


>gi|312200730|ref|YP_004020791.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232066|gb|ADP84921.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 464

 Score = 40.8 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIA---- 57
           K+ DLFCG GG    L + F     E   +++ +P +  TY+ NF    +  GD+     
Sbjct: 34  KLVDLFCGAGG----LSEGFRRVGFEVVAAADHDPDACATYERNFARAEVLCGDLRLPAL 89

Query: 58  KIKTQDI-PDHDVLLAGFPCQPFSQ 81
           + +  D+    D+++ G PCQ +SQ
Sbjct: 90  RERLVDLAAGADMIVGGPPCQAYSQ 114


>gi|188991808|ref|YP_001903818.1| hypothetical protein xccb100_2413 [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733568|emb|CAP51773.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas
          campestris pv. campestris]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P+    GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 30 IEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTMIARQVHAGTVPAPDILVGGTPCQSFSVA 89

Query: 83 G 83
          G
Sbjct: 90 G 90


>gi|315636653|ref|ZP_07891886.1| modification methylase Eco47II [Arcobacter butzleri JV22]
 gi|315479079|gb|EFU69779.1| modification methylase Eco47II [Arcobacter butzleri JV22]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +E    +EI+ Y+V+T + N P+  I   D++KI      +  D+L  GFPCQ FS AG
Sbjct: 94  IEHILLNEIDKYAVQTLKRNRPHWKIEHSDVSKIDFTSYKNKIDLLTGGFPCQAFSYAG 152


>gi|300118609|ref|ZP_07056347.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus SJ1]
 gi|298723998|gb|EFI64702.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus SJ1]
          Length = 602

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 19/96 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIF 53
           KI DLF G GG+    EQT      E   + EIN  +V TY  N          P     
Sbjct: 24  KIIDLFAGAGGLSNGFEQT---GRFEIVGAVEINKEAVATYICNHQNNKDIIIKPKNSEI 80

Query: 54  GDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
            DI+ I   +        P   V++ G PCQ FS A
Sbjct: 81  SDISSIDFNEFITQKGIDPSETVVIGGPPCQGFSNA 116


>gi|218128915|ref|ZP_03457719.1| hypothetical protein BACEGG_00487 [Bacteroides eggerthii DSM
          20697]
 gi|217988878|gb|EEC55195.1| hypothetical protein BACEGG_00487 [Bacteroides eggerthii DSM
          20697]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   ++     + ++     +++   +  Y+ N     IF DI  ++ 
Sbjct: 16 IEVVDLFCGIGGLSYGMKS----KGLKIKAGFDLDWTCLYAYETNNEAKFIFKDIRTVQK 71

Query: 62 QD-IPDHD-----VLLAGFPCQPFS 80
          +D IP +      VL    PCQPFS
Sbjct: 72 EDIIPFYSKKSIKVLAGCAPCQPFS 96


>gi|254804928|ref|YP_003083149.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|254668470|emb|CBA05754.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
          Length = 312

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE+  F+H  +      EI P + +T + N P+  +I GD+   + + 
Sbjct: 7  EICAGAGGQALGLERAGFSHVAL-----IEIEPSACQTLRLNRPDWNVIEGDVRLFQGKG 61

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+AG
Sbjct: 62 YDGIDLLAGGVPCPPFSKAG 81


>gi|309790719|ref|ZP_07685269.1| site-specific DNA-methyltransferase [Oscillochloris trichoides
          DG6]
 gi|308227250|gb|EFO80928.1| site-specific DNA-methyltransferase [Oscillochloris trichoides
          DG6]
          Length = 368

 Score = 40.8 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCG+GG    L      + +      +I+PY    Y+ N   T I  D+A I   ++ 
Sbjct: 21 DLFCGVGG----LTHGLIRQGLHITHGIDIDPYCRFPYENNNNATFIESDVANISGSELE 76

Query: 66 D-----HDVLLAG-FPCQPFS 80
          +        LLAG  PCQPFS
Sbjct: 77 NILGDAQLRLLAGCAPCQPFS 97


>gi|304311589|ref|YP_003811187.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
 gi|301797322|emb|CBL45542.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          +K  ++F G GG+   LE + F H         E N ++  +   NF    + FGDI   
Sbjct: 1  MKSLEIFSGAGGLAKGLELSGFKHAAF-----VEYNKHACASLSENFDRKKVFFGDIQDF 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              + + DV+  G PCQPFS  G
Sbjct: 56 DLTVLDNIDVVAGGPPCQPFSLGG 79


>gi|304389869|ref|ZP_07371828.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
 gi|304327045|gb|EFL94284.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
          Length = 503

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L  +       ++  ++SE++P++ +  + N P     GDI  +  
Sbjct: 4  LTLGSLFDGSGGFPLAAKMV----GIKPMWASEVDPFAFRVTKKNLPEVRHVGDINLLDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 60 GRLQPVDVITFGSPCQDLSIAG 81


>gi|126657178|ref|ZP_01728344.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
 gi|126621449|gb|EAZ92160.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
          Length = 433

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          DLF G+GG+ L  EQ       +   S EI+P     +  NFP  T I   + KI    I
Sbjct: 10 DLFAGVGGMTLGFEQA----GFDVLASVEIDPIHCSIHHYNFPFWTTICTSVTKITANQI 65

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         DV+  G PCQ FS  G
Sbjct: 66 RELSKIKNKPIDVVFGGPPCQGFSLMG 92


>gi|294788934|ref|ZP_06754174.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
 gi|294483036|gb|EFG30723.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L   DLF G GG  L     F+        S E+     +TY+ NFP   +   D+  + 
Sbjct: 3  LTYIDLFSGAGGFSLG----FDRAGFRQLLSVELEKTYCETYRTNFPKHHVLQTDLTTLS 58

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           + I +       DV++ G PCQ FS AG
Sbjct: 59 NEKILNELNGQAVDVVIGGPPCQGFSMAG 87


>gi|254933776|ref|ZP_05267135.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
 gi|293585336|gb|EFF97368.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
          Length = 325

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENL--GVDIKSLDYVEILPFAVQAYNNIFSNDYVPQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|148658198|ref|YP_001278403.1| DNA-cytosine methyltransferase [Roseiflexus sp. RS-1]
 gi|148570308|gb|ABQ92453.1| DNA-cytosine methyltransferase [Roseiflexus sp. RS-1]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          L   + F G G  R  L      R   C F+++I+    + YQ NF     ++  DI  I
Sbjct: 4  LTFYEFFAGGGLARFGL-----GRQWTCLFANDIDEKKAEVYQRNFSGAPEMVVEDIRHI 58

Query: 60 KTQDIPDHDVLL-AGFPCQPFSQAG 83
           T  +P    L  A FPCQ  S AG
Sbjct: 59 TTAMLPGRATLAWASFPCQDLSLAG 83


>gi|332310450|gb|EGJ23545.1| DNA-methyltransferase (Dcm) [Listeria monocytogenes str. Scott A]
          Length = 325

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENL--GVDIKSLDYVEILPFAVQAYNNIFSNDYVPQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|240142441|ref|YP_002966951.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
          AM1]
 gi|240012385|gb|ACS43610.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
          AM1]
          Length = 463

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG  L     F         S EI+P +  T+ ANFP  + F D       +
Sbjct: 13 VLDLFSGCGGFSLG----FQAAGFRIAGSVEIDPSARATHAANFPEAVHFDDATTADPAE 68

Query: 64 I------PDHDVLLAGFPCQPFSQAG 83
          +          VL+ G PCQ +++ G
Sbjct: 69 VGACLAGAPFTVLVGGPPCQAYARVG 94


>gi|237726505|ref|ZP_04556986.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. D4]
 gi|229435031|gb|EEO45108.1| C-5 cytosine-specific DNA methylase [Bacteroides dorei 5_1_36/D4]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   ++     + ++     +++   +  Y+ N     IF DI  ++ 
Sbjct: 11 IEVVDLFCGIGGLSYGMKS----KGLKIRAGFDLDQTCLYAYETNNEAKFIFKDIRTVRK 66

Query: 62 QD-IPDHD-----VLLAGFPCQPFS 80
          ++ IP +      VL    PCQPFS
Sbjct: 67 EEIIPFYSKKSIKVLAGCAPCQPFS 91


>gi|169834887|ref|YP_001715830.1| modification methylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408994|gb|ACA57404.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3
          str. Loch Maree]
          Length = 284

 Score = 40.8 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+     F G GG+ L L Q      +    S EI+     T + NF + +   DI+KI 
Sbjct: 1  MITAKSYFSGAGGMDLGLVQA----GINITHSYEIDSTCCNTLRTNFTHEIHQEDISKIT 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            D  D D+ +  FPC  +S
Sbjct: 57 VLDQQDADIYVGTFPCTKYS 76


>gi|119719333|ref|YP_919828.1| DNA-cytosine methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524453|gb|ABL77825.1| DNA-cytosine methyltransferase [Thermofilum pendens Hrk 5]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 14/89 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L + DLF G GG      + F         + E++P + + ++ NFP   +F  D+ ++ 
Sbjct: 5  LTVLDLFAGAGG----FSRGFAEEGFSIVGAVEVDPLAAEAFRLNFPGARVFEEDVREVH 60

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQA 82
          ++DI       P   V++ G PC+ +S+A
Sbjct: 61 SRDILLGLGFRP--RVIIGGPPCEAYSRA 87


>gi|153874403|ref|ZP_02002639.1| Modification methylase [Beggiatoa sp. PS]
 gi|152069134|gb|EDN67362.1| Modification methylase [Beggiatoa sp. PS]
          Length = 92

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+ DLF GIGG+ L     F +   +   + +    +++ YQANF +  +  D++++ 
Sbjct: 1  MMKVIDLFAGIGGLSL----GFQNAGFKIVAAIDNWQAAMENYQANFNHDALLIDLSQMS 56

Query: 61 T-QDIPDH--DVLLAGFPCQPFSQAG 83
            +   D+  D+++ G PCQ F   G
Sbjct: 57 DYKKFKDYQPDIIIGGPPCQDFPVPG 82


>gi|284161497|ref|YP_003400120.1| DNA-cytosine methyltransferase [Archaeoglobus profundus DSM 5631]
 gi|284011494|gb|ADB57447.1| DNA-cytosine methyltransferase [Archaeoglobus profundus DSM 5631]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + + D+F G GG      + F     E   + E      +TY+ NFP   +I  D+ +++
Sbjct: 1  MNVVDVFAGCGG----FSRGFKEEGFELVAAIENFKPVAETYKTNFPEVEVIVKDVKEVR 56

Query: 61 TQDIP----DHDVLLAGFPCQPFS 80
            D+     D DVL+   PC+PF+
Sbjct: 57 GFDVERICGDVDVLIGSPPCEPFT 80


>gi|109947738|ref|YP_664966.1| site-specific DNA methyltransferase [Helicobacter acinonychis
          str. Sheeba]
 gi|109714959|emb|CAJ99967.1| site-specific DNA methyltransferase [Helicobacter acinonychis
          str. Sheeba]
          Length = 327

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  EQ       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEQA----GFKIVIANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TNEINFSVDGIIGGPPCQSWSEAG 80


>gi|58580230|ref|YP_199246.1| modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424824|gb|AAW73861.1| Modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------IFGD-- 55
           DLF G GG+ L  EQ       +   + +I+P     ++ NFP           + GD  
Sbjct: 26  DLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTGDEL 81

Query: 56  --IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             IA I  +DI   D+++ G PCQ FS  G
Sbjct: 82  RRIAGIGKRDI---DIVIGGAPCQGFSLIG 108


>gi|62297515|sp|P52311|MTX2_XANOR RecName: Full=Modification methylase XorII; Short=M.XorII;
          AltName: Full=Cytosine-specific methyltransferase XorII
          Length = 424

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 19/90 (21%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------IFGD-- 55
          DLF G GG+ L  EQ       +   + +I+P     ++ NFP           + GD  
Sbjct: 8  DLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTGDEL 63

Query: 56 --IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            IA I  +DI   D+++ G PCQ FS  G
Sbjct: 64 RRIAGIGKRDI---DIVIGGAPCQGFSLIG 90


>gi|225158172|ref|ZP_03725067.1| DNA methyltransferase [Opitutaceae bacterium TAV2]
 gi|224802676|gb|EEG20930.1| DNA methyltransferase [Opitutaceae bacterium TAV2]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG  L     F    +   +  EI+       +  FP    F DI ++    +  
Sbjct: 20 LFAGIGGFDLG----FKRAGMNDCWQIEIDENCRDLLRRRFPTCEKFADIREVDVSTLAP 75

Query: 67 HDVLLAGFPCQPFSQAG 83
           DV+  GFPCQ  S AG
Sbjct: 76 VDVICGGFPCQDLSVAG 92


>gi|47207937|emb|CAF91437.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 405

 Score = 40.4 bits (93), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          +++ +L+ GIGG+   L+++   H+ V    + +IN  +   Y+ NFP+T L+   I  I
Sbjct: 1  MRVLELYSGIGGMHYALKESEVCHQVVA---AVDINTTANDVYRHNFPSTALLNKTIEGI 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
            ++      DV+L   PCQPF++ G
Sbjct: 58 TLEEFNQLSFDVILMSPPCQPFTRIG 83


>gi|331091845|ref|ZP_08340677.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402744|gb|EGG82311.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I   D+
Sbjct: 81  ELFAGAGGLALGIEKA----GFEPVGLIEFDKDAAESLKTNRPNWRVIHDDIANISCLDL 136

Query: 65  PDH--------DVLLAGFPCQPFSQAG 83
            D+        D+L  G PCQ FS AG
Sbjct: 137 EDYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|186683211|ref|YP_001866407.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594714|gb|AAK68647.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
          73102]
 gi|186465663|gb|ACC81464.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score = 40.4 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   S EI+P    T++ NFP  +++   +     ++I
Sbjct: 14 DLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHEFNFPYCSVLCQSVVDTTGEEI 69

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
                     DV++ G PCQ FS  G
Sbjct: 70 RSRSKIGDREIDVVICGSPCQGFSLIG 96


>gi|212716999|ref|ZP_03325127.1| hypothetical protein BIFCAT_01946 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212660059|gb|EEB20634.1| hypothetical protein BIFCAT_01946 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 392

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKIKT 61
          + F GIG  RL LE++      +  +S++I+    + Y+ NF +T    L+ GD++++  
Sbjct: 19 EFFAGIGLARLGLEES----GFQVEWSNDIDSAKCEMYRNNFTDTPGHTLVEGDMSELSG 74

Query: 62 QDIPDHDVLLA--GFPCQPFSQAG 83
           D+P HD  +A    PC   S AG
Sbjct: 75 DDLP-HDASIAWGSSPCTDLSLAG 97


>gi|322382626|ref|ZP_08056496.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153407|gb|EFX45824.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 345

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 15/87 (17%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI  DL   +       F   E  P  V   + ++P+  I+ D+  + T+++ +
Sbjct: 6  LFSGIGGI--DLAAKWAGIETVAFCEKESFPQQV--LRKHWPDIPIYDDVCAL-TREVLE 60

Query: 67 HDVLL----------AGFPCQPFSQAG 83
           D ++          AG+PCQPFS AG
Sbjct: 61 QDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|167461751|ref|ZP_02326840.1| site-specific DNA-methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 350

 Score = 40.4 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 15/87 (17%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI  DL   +       F   E  P  V   + ++P+  I+ D+  + T+++ +
Sbjct: 6  LFSGIGGI--DLAAKWAGIETVAFCEKESFPQQV--LRKHWPDIPIYDDVCAL-TREVLE 60

Query: 67 HDVLL----------AGFPCQPFSQAG 83
           D ++          AG+PCQPFS AG
Sbjct: 61 QDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|78047842|ref|YP_364017.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|78036272|emb|CAJ23963.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
          Length = 512

 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P+    GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 30 LEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTTIARQVHAGTVPAPDILVGGTPCQSFSVA 89

Query: 83 G 83
          G
Sbjct: 90 G 90


>gi|112983066|ref|NP_001036934.1| DNA cytosine-5 methyltransferase [Bombyx mori]
 gi|54888741|dbj|BAD67190.1| DNA cytosine-5 methyltransferase [Bombyx mori]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 3  KITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +I +L+ GIGG+     E T   + V      +IN  +   Y+ NFP TL+F  +I  + 
Sbjct: 8  RILELYSGIGGMHCAWNESTIKGKVVAAI---DINTVANDVYKYNFPETLLFTKNIQSLT 64

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
            +I  +  D +L   PCQPF++ G
Sbjct: 65 PIEIEKYKIDTVLMSPPCQPFTRNG 89


>gi|324993630|gb|EGC25549.1| modification methylase HgiDII [Streptococcus sanguinis SK405]
 gi|324995058|gb|EGC26971.1| modification methylase HgiDII [Streptococcus sanguinis SK678]
 gi|327462899|gb|EGF09220.1| modification methylase HgiDII [Streptococcus sanguinis SK1]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCG+GG+   ++Q      +      +I+  S   Y+ N     I  DI +I+  +I 
Sbjct: 7  DLFCGVGGLTYGVQQA----GINVVAGYDIDDKSKFAYEYNNDAKFILKDIKEIEDDEIL 62

Query: 65 ------PDHDVLLAGFPCQPFS 80
                 D  +L+   PCQPFS
Sbjct: 63 ALYPKDTDIKILIGCAPCQPFS 84


>gi|332706962|ref|ZP_08427022.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332354227|gb|EGJ33707.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 450

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---------FGDIA 57
           LFCG GG  L  +Q          ++++ +  +V+TY+ NF  +L          FG + 
Sbjct: 33  LFCGAGGCSLGFKQA----GYSIVYANDKDAAAVETYRINFTESLCSNEDIDNLDFGQVL 88

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                   + D+L+ G PCQ FS AG
Sbjct: 89  SEIVMKPGELDILIGGPPCQGFSTAG 114


>gi|289177801|gb|ADC85047.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 513

 Score = 40.4 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--- 63
            F G GG+ L  E+      + C    E N     T   N P+  + GDI KI   +   
Sbjct: 139 FFSGAGGLDLGFERAGISAALYC----ENNRECRMTLHRNRPDVALLGDITKISADEVRR 194

Query: 64  ---IP---DHDVLLAGFPCQPFSQAG 83
              IP   + DV+  G PCQ FS AG
Sbjct: 195 MARIPQGREIDVMFGGPPCQAFSTAG 220


>gi|240142254|ref|YP_002966764.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
 gi|240012198|gb|ACS43423.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G G +   LE   +    EC    E++  + +   + FP   +  D++ +  
Sbjct: 1  MRTIGLFSGSGSLEAGLEAGGH----ECLMLCEVSEPARRVLASRFPGVPVAHDVSDLAR 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  D+L AGFPCQ  S +G
Sbjct: 57 --LPSCDLLAAGFPCQDLSLSG 76


>gi|218134306|ref|ZP_03463110.1| hypothetical protein BACPEC_02199 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991681|gb|EEC57687.1| hypothetical protein BACPEC_02199 [Bacteroides pectinophilus ATCC
           43243]
          Length = 622

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIA-- 57
           M +I DLF G GG+   +E+   H   E     + N  +++T++ N P+T  + GDI   
Sbjct: 269 MFRILDLFSGAGGMSYGMEKN-EHFTTEVAL--DFNEKALQTFKHNMPDTETVCGDITDE 325

Query: 58  KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
           KIK + I        ++++ G PCQ FS  G
Sbjct: 326 KIKAKVIELCKAKKVNMIIGGPPCQGFSLKG 356


>gi|183602700|ref|ZP_02964064.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219682526|ref|YP_002468909.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190098|ref|YP_002967492.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195504|ref|YP_002969059.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218118|gb|EDT88765.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219620176|gb|ACL28333.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248490|gb|ACS45430.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250058|gb|ACS46997.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295793085|gb|ADG32620.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 453

 Score = 40.4 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--- 63
            F G GG+ L  E+      + C    E N     T   N P+  + GDI KI   +   
Sbjct: 79  FFSGAGGLDLGFERAGISAALYC----ENNRECRMTLHRNRPDVALLGDITKISADEVRR 134

Query: 64  ---IP---DHDVLLAGFPCQPFSQAG 83
              IP   + DV+  G PCQ FS AG
Sbjct: 135 MARIPQGREIDVMFGGPPCQAFSTAG 160


>gi|332711623|ref|ZP_08431554.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332349601|gb|EGJ29210.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 427

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            ++ +LF G GG+ L  E       +      EI+   V T + N P+  +I  DIA + 
Sbjct: 81  FRVIELFAGCGGMALGFENA----GLTTKLLVEIDKDCVNTLKLNRPSWEIIPEDIANVD 136

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
             +  D+ D++  G PCQ FS AG
Sbjct: 137 FTNYKDNVDIVAGGVPCQAFSYAG 160


>gi|283783021|ref|YP_003373775.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis
          409-05]
 gi|283441534|gb|ADB14000.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis
          409-05]
          Length = 357

 Score = 40.4 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G+GG+ L  E+           ++E +      Y  N   T ++ GDI  +   
Sbjct: 5  VIDLFSGVGGLSLGFEE----EGFSVLLANEYDESIANAYMKNHKTTKMVVGDITSLDLD 60

Query: 63 DI-----PDHDVLLAGFPCQPFSQAG 83
           +        DV++ G PCQ FSQ G
Sbjct: 61 AVFGTYKNKIDVIIGGPPCQGFSQKG 86


>gi|187923153|ref|YP_001894795.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714347|gb|ACD15571.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 317

 Score = 40.4 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          M     LF G GG    L    FN        +++I PY+   Y  N P T    G +A 
Sbjct: 1  MPTAVSLFTGCGGSDAGLVSLGFN-----VLMANDILPYARDVYLHNHPETDYRLGSVAD 55

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK+   P  ++L+  +PCQ FSQ G
Sbjct: 56 IKS--FPKAELLVGCYPCQGFSQGG 78


>gi|291544930|emb|CBL18039.1| Site-specific DNA methylase [Ruminococcus sp. 18P13]
          Length = 362

 Score = 40.4 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GI    L L++      VEC+ + EI+ Y+V   + NFP  +  G++     
Sbjct: 1  MKVLSLFDGISCGMLALQRA--GIPVECYDAFEIDKYAVTVSKRNFPVIVHHGNVYDGDF 58

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
               +D+LL G PC  +S A
Sbjct: 59 TQFKGYDLLLGGSPCTYWSIA 79


>gi|257069715|ref|YP_003155970.1| DNA-methyltransferase Dcm [Brachybacterium faecium DSM 4810]
 gi|256560533|gb|ACU86380.1| DNA-methyltransferase Dcm [Brachybacterium faecium DSM 4810]
          Length = 431

 Score = 40.4 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI----- 59
          DLF G GG+ L LEQ       E   S E +P     ++ NFP    F  D++K+     
Sbjct: 12 DLFAGAGGLSLGLEQA----GFEIAASVEYDPIHAAVHEFNFPYGKTFASDVSKVTGEQI 67

Query: 60 -KTQDIPDHDVLL--AGFPCQPFSQAG 83
           +  +I D ++ L   G PCQ  S  G
Sbjct: 68 RRESEIGDREIHLVAGGPPCQGISMIG 94


>gi|12229856|sp|P94147|MTA1_RUEGE RecName: Full=Modification methylase AgeI; Short=M.AgeI; AltName:
          Full=Cytosine-specific methyltransferase AgeI
 gi|8037880|gb|AAF71525.1|AF247972_2 AgeI methylase [Thalassobius gelatinovorus]
 gi|1695647|dbj|BAA11333.1| ageI metylase [Thalassobius gelatinovorus]
 gi|1588637|prf||2209243A AgeI methylase
          Length = 429

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          +K  DLFCG GG    L + F        ++++    ++ TY+ N P+ +   D I  + 
Sbjct: 1  MKTIDLFCGAGG----LGEGFRQAGFSALYANDHETPALATYKENHPDAVCSTDSIETVD 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
           + I +         DV++ G PCQ FS  G
Sbjct: 57 PKKIREDLGVAPGQVDVVMGGPPCQGFSTYG 87


>gi|255640237|gb|ACU20409.1| unknown [Glycine max]
          Length = 385

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L +   N + V+ F   EIN  +   YQ NF +    G+I  +  
Sbjct: 13 RVLEFYSGIGGMRYSLMKAQVNAQVVQAF---EINDTANDVYQHNFGHRPYQGNIQCLTA 69

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +  D  L   PCQP+++ G
Sbjct: 70 ADLDKYGADAWLLSPPCQPYTRQG 93


>gi|227875051|ref|ZP_03993196.1| possible DNA-cytosine methyltransferase [Mobiluncus mulieris ATCC
          35243]
 gi|304390295|ref|ZP_07372248.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|306817338|ref|ZP_07451083.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
          35239]
 gi|227844329|gb|EEJ54493.1| possible DNA-cytosine methyltransferase [Mobiluncus mulieris ATCC
          35243]
 gi|304326051|gb|EFL93296.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304649779|gb|EFM47059.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
          35239]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L   Q      +   ++SEI P+ +       P     GD+  +  
Sbjct: 4  LTLGSLFDGSGGFPLAGIQA----GIRPVWASEIEPFPILVTTRRLPQLTHVGDVTTVNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+   DV+  G PCQ  S AG
Sbjct: 60 ADVDAVDVITFGSPCQDLSVAG 81


>gi|255280633|ref|ZP_05345188.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
 gi|255269098|gb|EET62303.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
          Length = 378

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          MLK  DLF G GGI     + F      C  +++I+  +  T+  N P    +  D+ ++
Sbjct: 1  MLKTIDLFAGAGGI----TEGFRKAGYVCVCANDIDEEAKHTFTYNHPTVPFVLKDVREV 56

Query: 60 KTQDI--------PDHDVLLAGFPCQPFSQAG 83
             ++         + DV+  G PCQ FS AG
Sbjct: 57 TAAELLAAANCTAAEIDVITGGPPCQGFSLAG 88


>gi|313668596|ref|YP_004048880.1| DNA cytosine methyltransferase [Neisseria lactamica ST-640]
 gi|313006058|emb|CBN87519.1| DNA cytosine methyltransferase [Neisseria lactamica 020-06]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          +K  ++F G GG+   LE   F H +       E+N  +  + ++NF   L++ GD+A  
Sbjct: 1  MKSLEIFSGAGGLAKGLELAGFQHASF-----IELNKDACNSLRSNFNPKLVYQGDVADF 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  +V+  G PCQPFS  G
Sbjct: 56 DLSSQEGIEVIAGGPPCQPFSLGG 79


>gi|309380076|emb|CBX21487.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          +K  ++F G GG+   LE   F H +       E+N  +  + ++NF   L++ GD+A  
Sbjct: 1  MKSLEIFSGAGGLAKGLELAGFQHASF-----IELNKDACNSLRSNFNPKLVYQGDVADF 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  +V+  G PCQPFS  G
Sbjct: 56 DLSSQEGIEVIAGGPPCQPFSLGG 79


>gi|296081999|emb|CBI21004.3| unnamed protein product [Vitis vinifera]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L++   N + VE F   +IN  +   YQ NF +    G+I  +  
Sbjct: 15 RVLEFYSGIGGMRYSLKRGGVNAKIVEAF---DINNIANDVYQHNFGHRPCQGNIQSLTA 71

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +     L   PCQP+++ G
Sbjct: 72 ADLDRYRAHAWLLSPPCQPYTRQG 95


>gi|59801568|ref|YP_208280.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          FA 1090]
 gi|194097887|ref|YP_002000932.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998362|ref|ZP_04718286.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|240113683|ref|ZP_04728173.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          MS11]
 gi|240116425|ref|ZP_04730487.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          PID18]
 gi|240117164|ref|ZP_04731226.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          PID1]
 gi|240125114|ref|ZP_04738000.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          SK-92-679]
 gi|254494438|ref|ZP_05107609.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          1291]
 gi|260441646|ref|ZP_05795462.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|268594223|ref|ZP_06128390.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|268599750|ref|ZP_06133917.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          MS11]
 gi|268602094|ref|ZP_06136261.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID18]
 gi|268602852|ref|ZP_06137019.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID1]
 gi|268683710|ref|ZP_06150572.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          SK-92-679]
 gi|291045024|ref|ZP_06570732.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|10444408|gb|AAG17898.1|AF297971_2 DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae]
 gi|59718463|gb|AAW89868.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          FA 1090]
 gi|193933177|gb|ACF29001.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          NCCP11945]
 gi|226513478|gb|EEH62823.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          1291]
 gi|268547612|gb|EEZ43030.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|268583881|gb|EEZ48557.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          MS11]
 gi|268586225|gb|EEZ50901.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID18]
 gi|268586983|gb|EEZ51659.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID1]
 gi|268623994|gb|EEZ56394.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          SK-92-679]
 gi|291011027|gb|EFE03024.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|317163651|gb|ADV07192.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 377

 Score = 40.4 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          +K  ++F G GG+   LE   F H +       E+N  +  + ++NF   L++ GD+A  
Sbjct: 1  MKSLEIFSGAGGLAKGLELAGFQHASF-----IELNKDACNSLRSNFNPKLVYQGDVADF 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  +V+  G PCQPFS  G
Sbjct: 56 DLSSQEGIEVIAGGPPCQPFSLGG 79


>gi|282899425|ref|ZP_06307392.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
          CS-505]
 gi|281195689|gb|EFA70619.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
          CS-505]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          L   +LF G GG+   LE     H+ +      E++  +  T   N+ + LI+  D+ K 
Sbjct: 6  LSCLELFAGAGGLAKGLEMAKIKHKAL-----IELDYNACLTLANNYNHQLIYNVDVRKF 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K +++ + D++  G PCQPFS  G
Sbjct: 61 KFEEVGEVDIIAGGPPCQPFSLGG 84


>gi|283852745|ref|ZP_06370009.1| C-5 cytosine-specific DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283571826|gb|EFC19822.1| C-5 cytosine-specific DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 264

 Score = 40.4 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 34 EINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          E +P++    +  +P   +F D+  I  Q+    D+++ GFPCQ  S AG
Sbjct: 40 ECDPFARSILERRWPGVPVFHDVRDIHAQNAKRVDIVIGGFPCQDISCAG 89


>gi|169834680|ref|YP_001693292.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
 gi|169123228|gb|ACA47063.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+     F G GG+ L L Q      +    S EI+     T + NF + +   DI+KI 
Sbjct: 1  MITAKSYFSGAGGMDLGLVQA----GINITHSYEIDSTCCNTLRTNFTHEIHQEDISKIT 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            D  D D+ +  FPC  +S
Sbjct: 57 VLDQQDADIYVGTFPCTRYS 76


>gi|153814224|ref|ZP_01966892.1| hypothetical protein RUMTOR_00433 [Ruminococcus torques ATCC 27756]
 gi|145848620|gb|EDK25538.1| hypothetical protein RUMTOR_00433 [Ruminococcus torques ATCC 27756]
          Length = 702

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIA-- 57
           M +I DLF G GG+   +E+   H   E   + + N  +++T++ N P+T  + GDI   
Sbjct: 349 MFRILDLFSGAGGMSYGMEKN-EHFTTEV--ALDFNEKALQTFKHNMPDTETVCGDITDE 405

Query: 58  KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
           KIK + I        ++++ G PCQ FS  G
Sbjct: 406 KIKAKVIELCKAKKVNMIIGGPPCQGFSLKG 436


>gi|2894387|emb|CAA74997.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
          (C2) [Bacillus pumilus]
          Length = 392

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-------NTLIF 53
          M+   DLF G GG  L L+       ++   + E++ ++ +T++ NFP       N   +
Sbjct: 1  MITSLDLFSGAGGFTLGLKNA----GIKTIGAIELDRFASETFRKNFPEIPHYQANITEY 56

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          GD   IK       D++  G PCQ FS AG
Sbjct: 57 GDSEIIKL--FKGVDIITGGPPCQGFSVAG 84


>gi|75812889|ref|YP_320506.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
 gi|75705645|gb|ABA25317.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
          Length = 415

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           LF G+GG  L  E        E   + + NP  + TYQ NFP+ T++  DI ++  Q+I
Sbjct: 13 SLFSGVGGFDLGFEAA----GFEIAIAIDNNPIVLATYQHNFPHATVLCKDIREVTAQEI 68

Query: 65 P--------DHD----VLLAGFPCQPFSQAG 83
                   D D     +  G PCQ FS AG
Sbjct: 69 RACIQAKYVDWDGEIHTVFGGPPCQGFSVAG 99


>gi|14601777|ref|NP_148318.1| cytosine-specific DNA methylase [Aeropyrum pernix K1]
 gi|5105700|dbj|BAA81012.1| cytosine-specific DNA methylase [Aeropyrum pernix K1]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          D+F G GG      + F         + +  P + +TY+ANFP+T  I  D+ ++  ++I
Sbjct: 9  DVFAGGGG----FSRGFEEAGFRVRVAIDNYPPAARTYKANFPHTAFIADDVKEVGLEEI 64

Query: 65 P--------DHDVLLAGFPCQPFSQA 82
                   + DV++A  PC+PF+ A
Sbjct: 65 SSVSGLSPGEVDVVIASPPCEPFTGA 90


>gi|220923821|ref|YP_002499123.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219948428|gb|ACL58820.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 358

 Score = 40.0 bits (92), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +++ DLFCG GG+ L           +   S +I+P    +YQ NF  +  +  DI+ + 
Sbjct: 1  MRLIDLFCGCGGLSLGARNA----GFKVVSSVDIDPILTSSYQRNFRGSRPLIADISSLT 56

Query: 61 TQDIPDHDVLLAGF-----PCQPFSQAG 83
            ++  H            PCQ FS+AG
Sbjct: 57 RSELLRHAGGHVDGVVGGPPCQGFSEAG 84


>gi|257453711|ref|ZP_05618997.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
 gi|257448894|gb|EEV23851.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
          Length = 415

 Score = 40.0 bits (92), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 33  SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +E + Y+ +T +AN P+  +I  DI  +    +    D+L  GFPCQPFS AG
Sbjct: 109 NEKDKYACQTLRANRPDWNVIEDDITNVDFSHLKGQVDLLTGGFPCQPFSYAG 161


>gi|288576182|ref|ZP_05978340.2| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288566126|gb|EFC87686.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F   N+     F+ +I+P+  K+Y  N+         DI 
Sbjct: 33  IRLATVFSGIGAV----EQAFYRLNLNHTIVFAGDIDPHVKKSYLGNYQLDEGFWHDDIT 88

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 89  QFDARKFRNQVDILVGGSPCQAFSMVG 115


>gi|172038906|ref|YP_001805407.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171700360|gb|ACB53341.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLF G+GG+ L  EQ       +   S E++P     ++ NFP  T I   + +I    
Sbjct: 9  VDLFAGVGGMTLGFEQA----GFDVLASVELDPIHCSIHRYNFPFWTTICASVTRITANQ 64

Query: 64 IPDH--------DVLLAGFPCQPFSQAG 83
          I +         DV+  G PCQ FS  G
Sbjct: 65 IRELSSIQNQPIDVVFGGPPCQGFSLMG 92


>gi|66768381|ref|YP_243143.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
          8004]
 gi|66573713|gb|AAY49123.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
          8004]
          Length = 512

 Score = 40.0 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P+    GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 30 LEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTMIARQVHAGTVPAPDILVGGTPCQSFSVA 89

Query: 83 G 83
          G
Sbjct: 90 G 90


>gi|237731054|ref|ZP_04561535.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
 gi|226906593|gb|EEH92511.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
          Length = 411

 Score = 40.0 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          + F G G  R  L   +      C F+++++P    TY  N+        D+ +I + D+
Sbjct: 24 EFFAGGGMARAGLGNPW-----RCLFANDMDPIKASTYIDNWGGEHFDTRDVREIPSNDL 78

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P H D+  A FPCQ  S AG
Sbjct: 79 PRHADLTWASFPCQDLSLAG 98


>gi|119490455|ref|ZP_01622916.1| cytosine specific DNA methyltransferase (DDEM) [Lyngbya sp. PCC
          8106]
 gi|119453926|gb|EAW35081.1| cytosine specific DNA methyltransferase (DDEM) [Lyngbya sp. PCC
          8106]
          Length = 399

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK-I 59
          LK  DLFCG+GG+   L+ T   R +E  ++ +    ++  Y+ N P T L+  D+++ +
Sbjct: 3  LKALDLFCGMGGLSWGLKST---RKIEPIWAVDNCQTALNLYELNLPKTNLLNLDLSRQL 59

Query: 60 KTQDIPDH-------DVLLAGFPCQPFSQ 81
              + +        D+++ G PCQ F+Q
Sbjct: 60 DVTSLIEKINFNGGIDLMVGGSPCQGFTQ 88


>gi|288941188|ref|YP_003443428.1| DNA-cytosine methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896560|gb|ADC62396.1| DNA-cytosine methyltransferase [Allochromatium vinosum DSM 180]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLFCG+GG    L    +   ++     +I+      Y+AN P   I  D+  +  
Sbjct: 15 IKAVDLFCGVGG----LTHGLSRGGIQVMAGIDIDASCRYPYEANNPARFIEHDVGTLPP 70

Query: 62 QDI------PDHDVLLAGFPCQPFS 80
            I       D+ +L    PCQPFS
Sbjct: 71 DLITPYYENADYTLLAGCAPCQPFS 95


>gi|166237008|gb|ABY86226.1| BsaHI DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 323

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLF G GG    + + F +   E   + E    +++ Y+ NF + +I  D++ ++ 
Sbjct: 1  MRVIDLFAGCGG----MSKGFENAGYEIVAAFENWKDAIEVYKKNFKHPVIEYDLSNVED 56

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
           +I      D+++ G PCQ +S AG
Sbjct: 57 YNIFKQFKPDMIIGGPPCQDYSSAG 81


>gi|29366785|ref|NP_813725.1| gp9.1 [Streptomyces phage phiBT1]
 gi|29243105|emb|CAD80133.1| gp9.1 [Streptomyces phage phiBT1]
          Length = 166

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + I +L  G GG+ + +E     +       +E++  + +  +  FP+    GD+   + 
Sbjct: 1  MAILELCAGYGGLGIAVEALTGDK---VTVVAEVHKAACEVMKYRFPDAPNIGDVRHARW 57

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          +D+    D + AGFPCQ  S AG
Sbjct: 58 EDLRGEVDTITAGFPCQDISNAG 80


>gi|311104267|ref|YP_003977120.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758956|gb|ADP14405.1| cytosine-specific methyltransferase [Achromobacter xylosoxidans
          A8]
          Length = 536

 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQ 81
          ++E  + +EI P+        +P     GD+  I  Q     +P  D+L+ G PCQ FS 
Sbjct: 34 DLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSV 93

Query: 82 AG 83
          AG
Sbjct: 94 AG 95


>gi|302870555|ref|YP_003839192.1| C-5 cytosine-specific DNA methylase [Micromonospora aurantiaca
          ATCC 27029]
 gi|302573414|gb|ADL49616.1| C-5 cytosine-specific DNA methylase [Micromonospora aurantiaca
          ATCC 27029]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  +  G GG+ + +E        +  + +E + ++      ++P+    GDI  +   
Sbjct: 10 RIGSVCTGYGGLDMAVELVLGG---QLAWYAETDRHAATVLAHHWPDVDNLGDIRTVDWT 66

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +   D++ AGFPCQ  S AG
Sbjct: 67 QVAPVDIVTAGFPCQDISNAG 87


>gi|295691449|ref|YP_003595142.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295433352|gb|ADG12524.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 374

 Score = 40.0 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQ 62
          + F G G  R+ L   +      C F+++ +P    TY+ANF         GD+  +  +
Sbjct: 11 EFFAGGGMARIGLGNGWT-----CAFANDFDPVKAATYRANFGADEGHFQQGDVFALSAE 65

Query: 63 DIPDHDVLLAGFPCQPFS 80
           +P  D+  A  PCQ FS
Sbjct: 66 TLPTADLAWASSPCQDFS 83


>gi|297159196|gb|ADI08908.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 664

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF G GG+ L L++           + + +  +++T+ ANFP   +  D+     +D  
Sbjct: 46  DLFSGAGGLSLGLQRA----GWTTAAAVDFDERALETHAANFPGMSLRMDLGNPAERDRL 101

Query: 66  DH---------DVLLAGFPCQPFSQAG 83
           +          D++  G PCQPFS+AG
Sbjct: 102 EQVLEPAKGKIDLVAGGPPCQPFSRAG 128


>gi|225164697|ref|ZP_03726934.1| DNA-cytosine methyltransferase [Opitutaceae bacterium TAV2]
 gi|224800687|gb|EEG19046.1| DNA-cytosine methyltransferase [Opitutaceae bacterium TAV2]
          Length = 372

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            + ++  G GG  L L Q           + EI+  + KT + N P+  +F  D+ +I+
Sbjct: 5  FSVFEICAGAGGQALGLHQA----GFASAGAVEIDSDACKTLRLNRPDWNVFECDVREIR 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D    D+L  G PC PFS AG
Sbjct: 61 GRDFAGVDLLAGGVPCPPFSTAG 83


>gi|77918034|ref|YP_355849.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
          2380]
 gi|77544117|gb|ABA87679.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
          2380]
          Length = 405

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          MLK   L+ G GG+ L LE        E   + EI+ ++ +T   N PN   I  DI  +
Sbjct: 1  MLKTISLYTGAGGLDLGLEAA----GFETTVAVEIDKWACQTLCHNRPNWNPIEEDIHNV 56

Query: 60 KTQDIPD--------HDVLLAGFPCQPFSQAG 83
              + +          +L+ G PCQPFS+A 
Sbjct: 57 SCATLSEIGGFNSGEASLLIGGPPCQPFSKAA 88


>gi|317132208|ref|YP_004091522.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470187|gb|ADU26791.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 346

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIA 57
          +++  D F GIGG    ++Q   N          EI+  + K Y    +   T    D+ 
Sbjct: 4  VIRFFDCFAGIGGFYYGVQQIKSNKYEFRHVAYCEIDKSAQKFYDVACSSEGTQKIQDVK 63

Query: 58 KIKTQDIP------DHDVLLAGFPCQPFSQAG 83
           IKT+  P      D D+L AGFPCQ FS  G
Sbjct: 64 DIKTKKNPNGIMVSDFDILFAGFPCQSFSNVG 95


>gi|295673276|ref|XP_002797184.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
 gi|226282556|gb|EEH38122.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
          Length = 2095

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 26  NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGF 74
           N+   FS+EI+P+     Q NF   +IF D+ ++   D          +P D D+L+ GF
Sbjct: 150 NIHHLFSAEIDPFKQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVPADLDLLIVGF 209

Query: 75  PCQPFS 80
            C  FS
Sbjct: 210 SCVDFS 215


>gi|307595752|ref|YP_003902069.1| DNA-cytosine methyltransferase [Vulcanisaeta distributa DSM
          14429]
 gi|307550953|gb|ADN51018.1| DNA-cytosine methyltransferase [Vulcanisaeta distributa DSM
          14429]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG      + F     +     E++  + +T+  NFP   +I  DI  +  +
Sbjct: 5  VVDLFAGAGG----FSRGFKDVGFDVALGVEVDINAARTFSYNFPEAVMITDDIRNVSGK 60

Query: 63 DIPDH-----DVLLAGFPCQPFSQ 81
          DI  +     DV++ G PC+ F++
Sbjct: 61 DIIKYIGGRPDVIIGGSPCEAFTE 84


>gi|91784577|ref|YP_559783.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans
          LB400]
 gi|40019222|emb|CAE92946.1| putative DNA methyltransferase [Pseudomonas putida]
 gi|91688531|gb|ABE31731.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans
          LB400]
          Length = 533

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+        +P+    GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 39 LEAAWFAEIEPFPSAVLAHRYPHVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSVA 98

Query: 83 G 83
          G
Sbjct: 99 G 99


>gi|304390602|ref|ZP_07372555.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326358|gb|EFL93603.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 321

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++ DLF G GG+ L  EQ   ++ V  F      P +V  Y+ NF + +   D+A  + 
Sbjct: 25  MRVIDLFSGCGGMSLGFEQG-GYQVVAAF--DNWQP-AVDIYKENFQHPIHNIDLATDEA 80

Query: 62  QDIPDH---DVLLAGFPCQPFSQAG 83
            +I +    DV++ G PCQ +S AG
Sbjct: 81  LEIIEQAKPDVIIGGPPCQDYSIAG 105


>gi|34451616|gb|AAQ72364.1| methylase fusion protein [Geobacillus stearothermophilus]
          Length = 1007

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
           K  DLFCG GG    L   F    ++    ++I   +  T + N P   +  GDI++ +T
Sbjct: 774 KSIDLFCGAGG----LTAGFKEAGIQSVLCNDIEESACITLKINNPEIKVLCGDISQHET 829

Query: 62  QDI-------PDHDVLLAGFPCQPFSQAG 83
           ++         D D++  G PCQ FS AG
Sbjct: 830 KEHIVNVAINEDVDIICGGPPCQGFSMAG 858


>gi|323487872|ref|ZP_08093130.1| cytosine-specific methyltransferase [Planococcus donghaensis
          MPA1U2]
 gi|323398606|gb|EGA91394.1| cytosine-specific methyltransferase [Planococcus donghaensis
          MPA1U2]
          Length = 367

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK-IKT-QD 63
          LF G GG    ++  F    +   +++EI+  +  TY+ N P T++  GD+   I+T ++
Sbjct: 10 LFTGAGG----MDVGFKSAGIHVEWANEIDKDACNTYETNNPETILAKGDLRNYIETLKE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
            D D++  G PCQ FS AG
Sbjct: 66 HRDIDIVFGGPPCQGFSVAG 85


>gi|239622757|ref|ZP_04665788.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|239514754|gb|EEQ54621.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 390

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIK 60
          + F GIG  RL LE+   H      +S++I+    + Y+  F N     TLI GD+ ++ 
Sbjct: 20 EFFAGIGLARLGLEEAGFH----VAWSNDIDHAKCQMYRNQFGNNEQEHTLIEGDMGELH 75

Query: 61 TQDIPDHDVLLA--GFPCQPFSQAG 83
            D+P HD+ +A    PC   S AG
Sbjct: 76 GSDLP-HDISIAWGSSPCTDISLAG 99


>gi|10955252|ref|NP_052188.1| DNA-methyltransferase [Escherichia coli]
 gi|1237268|gb|AAC37145.1| eco29kIM [Escherichia coli]
 gi|2660513|emb|CAA04944.1| DNA-methyltransferase [Escherichia coli]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ++  ++F G GG+   LE   F H         E+N ++  + + NF    +F GDI   
Sbjct: 1  MRSLEIFSGAGGLAKGLELAGFQHVGF-----VELNKHACDSLRLNFDEEKVFQGDIKNY 55

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +   D++  G PCQPFS  G
Sbjct: 56 DLSSLDKIDIVAGGPPCQPFSLGG 79


>gi|268611949|ref|ZP_06145676.1| DNA-cytosine methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GI    L L++      VEC+ + EI+ Y+V   + NFP  +  G++     
Sbjct: 1  MKVLSLFDGISCGMLALQRA--GIPVECYDAFEIDKYAVTVSKRNFPVIVHHGNVYDGDF 58

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
               +D+LL G PC  +S A
Sbjct: 59 TQFRGYDLLLGGSPCTYWSIA 79


>gi|296453364|ref|YP_003660507.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          longum JDM301]
 gi|296182795|gb|ADG99676.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          longum JDM301]
          Length = 392

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKIKT 61
          + F GIG  RL LE+       +  +S++I+    + Y+ NF +T    L+ GD++++  
Sbjct: 19 EFFAGIGLARLGLEEA----GFQVEWSNDIDAAKCEMYRNNFTDTPGHTLVEGDMSELSG 74

Query: 62 QDIPDHDVLLA--GFPCQPFSQAG 83
           D+P HD  +A    PC   S AG
Sbjct: 75 DDLP-HDASIAWGSSPCTDLSLAG 97


>gi|225691140|gb|ACO06242.1| 5'-methylcytosine methyltransferase M.BbrI [Bifidobacterium breve
          UCC2003]
          Length = 392

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAKIKT 61
          + F GIG  RL LE+       +  +S++I+    + Y+ NF +T    L+ GD++++  
Sbjct: 19 EFFAGIGLARLGLEEA----GFQVEWSNDIDAAKCEMYRNNFTDTPGHTLVEGDMSELSG 74

Query: 62 QDIPDHDVLLA--GFPCQPFSQAG 83
           D+P HD  +A    PC   S AG
Sbjct: 75 DDLP-HDASIAWGSSPCTDLSLAG 97


>gi|163855756|ref|YP_001630054.1| putative DNA-cytosine methyltransferase [Bordetella petrii DSM
          12804]
 gi|163259484|emb|CAP41784.1| putative DNA-cytosine methyltransferase [Bordetella petrii]
          Length = 201

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQ 81
           +E  + +EI P+        +P+    GD+  I  Q     +P  D+L+ G PCQ FS 
Sbjct: 38 GLEAAWFAEIEPFPSAVLAHRYPHVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSV 97

Query: 82 AG 83
          AG
Sbjct: 98 AG 99


>gi|40850587|gb|AAR96017.1| M2.BsaI [Geobacillus stearothermophilus]
          Length = 381

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  DLF G GG+ L     F     +   +++I+ +++ TY  N  N ++ GDI   K  
Sbjct: 125 QFVDLFSGAGGLSLG----FLWAGWKPIIANDIDKWALTTYMNNIHNEVVLGDIRDEKVS 180

Query: 63  DI------------PDHDV-LLAGFPCQPFSQAG 83
           +             PD  + +L G PCQ FS AG
Sbjct: 181 ETIIQKCLIAKKSNPDRPLFVLGGPPCQGFSTAG 214


>gi|226292283|gb|EEH47703.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb18]
          Length = 2038

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 26  NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGF 74
           N+   FS+EI+P+     Q NF   +IF D+ ++   D          +P D D+L+ GF
Sbjct: 151 NIHHLFSAEIDPFKQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVPADLDLLIVGF 210

Query: 75  PCQPFS 80
            C  FS
Sbjct: 211 SCVDFS 216


>gi|113474395|ref|YP_720456.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110165443|gb|ABG49983.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 421

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   S E++P     ++ NFP  +++  ++ ++   +I
Sbjct: 8  DLFAGAGGMTLGFEQA----GFDIPISVELDPIHCAIHKFNFPFWSILCRNVVELTGNEI 63

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         DV+  G PCQ FSQ G
Sbjct: 64 REKLNIPNREIDVIFGGPPCQGFSQIG 90


>gi|320540918|ref|ZP_08040419.1| putative site-specific DNA methylase [Serratia symbiotica str.
           Tucson]
 gi|320029019|gb|EFW11197.1| putative site-specific DNA methylase [Serratia symbiotica str.
           Tucson]
          Length = 223

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           + F G G  R  L   +     +C F+++ +P     Y++N+     L+  DI  I +  
Sbjct: 45  EFFAGGGMARAGLGAQW-----DCLFANDFSPMKGHAYRSNWSGGTDLLVEDINNITSAQ 99

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
           +P   D++ A FPCQ  S AG
Sbjct: 100 LPAQADLVWASFPCQDLSLAG 120


>gi|261338523|ref|ZP_05966407.1| modification methylase Sau3AI [Bifidobacterium gallicum DSM 20093]
 gi|270276533|gb|EFA22387.1| modification methylase Sau3AI [Bifidobacterium gallicum DSM 20093]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR----------NVECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L+   N            +    ++++  P       ++ + Y+
Sbjct: 4   IRIAELFAGVGGFRLGLDGYDNPEHPDFHMEPAGDFRTVWANQWEPNGQDSKQFAWRCYE 63

Query: 45  ANF-PNTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA +  Q      +IP+ D+L+ GFPCQ +S A
Sbjct: 64  DRFGAGSCVNEDIAVVLDQVDAGEREIPEFDMLVGGFPCQDYSVA 108


>gi|172038386|ref|YP_001804887.1| site-specific DNA-methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699840|gb|ACB52821.1| probable site-specific DNA-methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 461

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI--- 64
           F G  G+ + +EQ      + C    EI+ Y  +T   N PN  + GDI      DI   
Sbjct: 77  FSGAMGLDIGIEQAGFDIKLAC----EIDKYCRQTIALNKPNIALVGDINSCSADDILSY 132

Query: 65  ------PDHDVLLAGFPCQPFSQAG 83
                  D D+++ G PCQ FS AG
Sbjct: 133 AGLTRSDDIDLIVGGPPCQAFSTAG 157


>gi|226223282|ref|YP_002757389.1| type II DNA modification enzyme (methyltransferase) [Listeria
          monocytogenes Clip81459]
 gi|225875744|emb|CAS04447.1| Putative type II DNA modification enzyme (methyltransferase)
          [Listeria monocytogenes serotype 4b str. CLIP 80459]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHR------NVECFFSSEINPYSVKTYQANFPNTLIFG 54
          M+++ DLF G GG+ L  +    +       +    F++E++ ++ + +  NFP   +  
Sbjct: 1  MIRVVDLFSGAGGLTLGFQNRIINNTFLPMSDYNILFANEVDKHASEAFSLNFPQIPMLN 60

Query: 55 DIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
                T+D  D+        D+++ G PCQ FS  G
Sbjct: 61 CSITELTEDYLDNHEIEYSNIDLVIGGPPCQSFSTVG 97


>gi|153940750|ref|YP_001392502.1| hypothetical protein CLI_3290 [Clostridium botulinum F str.
          Langeland]
 gi|152936646|gb|ABS42144.1| conserved domain protein [Clostridium botulinum F str. Langeland]
          Length = 338

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L   D F G+GG R  +E   +H+ V  C +    N  S K   +   +     DI  +K
Sbjct: 3  LTFIDFFAGVGGFRKGMEMA-DHKCVGHCEWDKFAN-MSYKEIHSPKEDEWFGTDIRNVK 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P  D    GFPCQ  S AG
Sbjct: 61 ATELPRADCWCFGFPCQDISVAG 83


>gi|251781727|ref|YP_002996029.1| 5-methylcytosine methyltransferase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
 gi|242390356|dbj|BAH80815.1| 5-methylcytosine methyltransferase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
          Length = 422

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT----FNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI 56
          +KI +LF G+GG R+ LE      F  +    +  S  +  + + Y  +F ++  I   I
Sbjct: 1  MKILELFAGVGGFRVGLENADKDLFQTKWANQWEPSRKSQDAFEVYDYHFSDSQNINISI 60

Query: 57 AKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          + I  +D    D D+++ GFPCQ +S A
Sbjct: 61 SDITDEDFEKMDADMIVGGFPCQDYSVA 88


>gi|167997277|ref|XP_001751345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697326|gb|EDQ83662.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 812

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE-CFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           L +  LF G+GGI     Q   +  +    +SSE+   +++  ++  P+    GD+ K+ 
Sbjct: 146 LVVLSLFDGLGGIW----QALTNLGIPFSGYSSEVLAPAIQVVKSRHPHVKHVGDVRKLN 201

Query: 61  TQDIPDH-DVLLAGFPCQPFSQAG 83
              IP+  D+++ GFPCQ  S  G
Sbjct: 202 LSAIPEKVDLVVGGFPCQDLSIMG 225


>gi|323454079|gb|EGB09949.1| hypothetical protein AURANDRAFT_62427 [Aureococcus anophagefferens]
          Length = 634

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
           ++   +LF GIGG R  LE            + EI   + + Y ANF   +L    + ++
Sbjct: 184 VVTFAELFAGIGGFRAGLEAAAGAPPAP-AVACEILESARRIYAANFGAESLTAAPVQRL 242

Query: 60  KTQDIPDHDVLLAGFPCQPFS-QAG 83
               +P  D+L+AGFPCQ ++ QAG
Sbjct: 243 DR--LPACDLLMAGFPCQSYTEQAG 265


>gi|223937258|ref|ZP_03629164.1| DNA-cytosine methyltransferase [bacterium Ellin514]
 gi|223894043|gb|EEF60498.1| DNA-cytosine methyltransferase [bacterium Ellin514]
          Length = 408

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN--------TL 51
          +L+  +LF G GG+ + L    F  R +      E N ++ +T + N  N         L
Sbjct: 7  ILRSLELFAGAGGLAIGLHHAGFKPRAL-----VEFNRHACETLRFNADNGFETLNGAKL 61

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            GD+ ++   +I   DV+  G PCQPFS  G
Sbjct: 62 FAGDVREVDFAEIDAVDVVTGGPPCQPFSIGG 93


>gi|21553420|gb|AAM62513.1| DNA methyltransferase PMT1-like protein [Arabidopsis thaliana]
          Length = 383

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L  +      VE F   EIN  +   YQ NF +    G+I  +  
Sbjct: 16 QVLEFYSGIGGMRYSLMASGIVSEVVEAF---EINDSANDVYQHNFKHRPYQGNIQSLTA 72

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +  D  L   PCQP+++ G
Sbjct: 73 ADLDKYNADAWLLSPPCQPYTRQG 96


>gi|296206220|ref|XP_002750112.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 1
          [Callithrix jacchus]
          Length = 391

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
           Q  D    D++L   PCQPF++ G
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTRIG 86


>gi|328946253|gb|EGG40397.1| modification methylase Sau96I [Streptococcus sanguinis SK1087]
          Length = 333

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ +LF G GG+ L +E+       E     E +  + +T ++N P+  +I  DI KI 
Sbjct: 1  MKVIELFAGAGGLALGIERA----GFESIGLIEFDKAASETLKSNRPDWNVIHEDIEKIS 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
            ++ +         D+L  G PCQ FS AG
Sbjct: 57 PLNLEELFNIRKGELDLLSGGAPCQSFSYAG 87


>gi|223983703|ref|ZP_03633876.1| hypothetical protein HOLDEFILI_01157 [Holdemania filiformis DSM
          12042]
 gi|223964334|gb|EEF68673.1| hypothetical protein HOLDEFILI_01157 [Holdemania filiformis DSM
          12042]
          Length = 340

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI------AKIK 60
          LF GIGG+ L  E        +C ++    PYSV   + ++P    F DI      A  +
Sbjct: 9  LFSGIGGLDLAAEAAGFRTVCQCEWADY--PYSV--LEKHWPEVPRFRDITTFTKEAFFE 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +    V+  GFPCQPFS AG
Sbjct: 65 KTGLETVTVISGGFPCQPFSTAG 87


>gi|148555377|ref|YP_001262959.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
 gi|148500567|gb|ABQ68821.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
          Length = 412

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK   LF GIGG+    E        +   + EI+  S +    N    +I  DI  + T
Sbjct: 9  LKAISLFTGIGGLDFGFEAA----GFDTAVALEIDKASCRVLGDNRDWPIIGEDIHDVGT 64

Query: 62 Q--------DIPDHDVLLAGFPCQPFSQAG 83
                   ++ + D+L+ G PCQPFS++G
Sbjct: 65 PRLLQAANLEVGEADILIGGPPCQPFSKSG 94


>gi|261820947|ref|YP_003259053.1| DNA-cytosine methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261604960|gb|ACX87446.1| DNA-cytosine methyltransferase [Pectobacterium wasabiae WPP163]
          Length = 487

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          SEI+P+        +P+    GD+ +I  Q    ++   D+L+ G PCQ FS AG
Sbjct: 37 SEIDPFPCAVLAHRYPHVPNLGDMTRIANQVRVGEVIAPDILVGGTPCQAFSIAG 91


>gi|56385094|gb|AAV85978.1| 5' cytosine DNA methyl transferase-like protein [Pristionchus
          pacificus]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ + +CGIGGI   L++T    ++   F  +IN  +   Y+ NFP+T +    + I+ 
Sbjct: 10 VKVLEFYCGIGGIHFALKRTSIPFHIAAAF--DINTTTNVIYRHNFPSTKL--KESNIQG 65

Query: 62 QDIPDHDVLLAGF-----PCQPFSQAG 83
            +   D L A       PCQPF+  G
Sbjct: 66 VSVSSLDKLGAELWTMSPPCQPFTLKG 92


>gi|22256926|sp|O33481|MTP1_PSYTA RecName: Full=Modification methylase PspPI; Short=M.PspPI; AltName:
           Full=Cytosine-specific methyltransferase PspPI
 gi|2558610|emb|CAA68841.1| type II DNA m5C-methyltransferase [Psychrobacter sp.]
          Length = 416

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 33  SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +E + Y+  T +AN PN  +I  DI  +    +    D+L  GFPCQPFS AG
Sbjct: 104 NEKDKYACATLRANRPNWNVIEDDIENVDFTHLNGKVDLLTGGFPCQPFSYAG 156


>gi|291460136|ref|ZP_06599526.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417477|gb|EFE91196.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG+ L  E       ++     E+  Y     + ++P+   + DI  +  +   +
Sbjct: 6  LFSGIGGLDLAAEWA----GIKTVGQCELADYPYSVLEKHWPDVPKWRDIRDLTKESFYE 61

Query: 67 H------DVLLAGFPCQPFSQAG 83
                 D++  GFPCQPFS AG
Sbjct: 62 RTGLRTVDIISGGFPCQPFSFAG 84


>gi|209527695|ref|ZP_03276192.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491867|gb|EDZ92225.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 314

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          ++  DLF G GG+ L  E      +++  F  EI   ++K YQ NF + +   D+++   
Sbjct: 1  MRTIDLFAGCGGLSLGFENA--GFDIKAAF--EIWQPAIKVYQRNFRHPIFQVDLSEESV 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I T      +V++ G PCQ FS AG
Sbjct: 57 IHTLREYKPEVIIGGPPCQDFSSAG 81


>gi|18420929|ref|NP_568474.1| DNMT2 (DNA METHYLTRANSFERASE-2); DNA binding [Arabidopsis
          thaliana]
 gi|332006070|gb|AED93453.1| DNA methyltransferase-2 [Arabidopsis thaliana]
          Length = 383

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L  +      VE F   EIN  +   YQ NF +    G+I  +  
Sbjct: 16 QVLEFYSGIGGMRYSLMASGIVSEVVEAF---EINDSANDVYQHNFKHRPYQGNIQSLTA 72

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +  D  L   PCQP+++ G
Sbjct: 73 ADLDKYNADAWLLSPPCQPYTRQG 96


>gi|154486241|ref|ZP_02027648.1| hypothetical protein BIFADO_00044 [Bifidobacterium adolescentis
          L2-32]
 gi|154084104|gb|EDN83149.1| hypothetical protein BIFADO_00044 [Bifidobacterium adolescentis
          L2-32]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GI    +   QT     V     +EI P+     + ++PN    GD+ K+  
Sbjct: 1  MKYISLFSGIEAATVAW-QTLGWEPVA---YAEIEPFPKAVLKHHYPNVPDLGDMTKVNW 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          ++     DV++ G PCQ FS AG
Sbjct: 57 KEYHHAADVVVGGSPCQAFSIAG 79


>gi|323694940|ref|ZP_08109090.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
 gi|323501030|gb|EGB16942.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
          Length = 338

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI------AKIK 60
          LF GIGG+ L  E        +C ++    PYSV   + ++P+   F DI      A  +
Sbjct: 9  LFSGIGGLDLAAEAAGFETVCQCEWADY--PYSV--LERHWPDVPKFRDITTFTKEAFFE 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +    ++  GFPCQPFS AG
Sbjct: 65 KTGLETVTIISGGFPCQPFSTAG 87


>gi|300866085|ref|ZP_07110814.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300335911|emb|CBN55972.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DI--AKI 59
          D F G GG+ L  EQ       +   S EI+P    T+  NFP   +F     DI  A+I
Sbjct: 14 DFFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHNFNFPFWSVFCQSIIDITGAEI 69

Query: 60 KTQD-IPDH--DVLLAGFPCQPFSQAG 83
          + +  I D   DV+  G PCQ FS  G
Sbjct: 70 RQKSAIGDREIDVVFGGPPCQGFSLIG 96


>gi|147856667|emb|CAN80315.1| hypothetical protein VITISV_020760 [Vitis vinifera]
          Length = 1148

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 3   KITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ + + GIGG+R  L++   N + VE F   +IN  +   YQ NF +    G+I  +  
Sbjct: 865 RVLEFYSGIGGMRYSLKRGGVNAKIVEAF---DINNIANDVYQHNFGHRPYQGNIQSLTA 921

Query: 62  QDIPD---HDVLLAGFPCQPFSQAG 83
            D+     H  LL+  PCQP+++ G
Sbjct: 922 ADLDRYRAHAWLLSP-PCQPYTRQG 945


>gi|121592996|ref|YP_984892.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120605076|gb|ABM40816.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 449

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 16/97 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF---FSSEINPYSVKTYQA----------NFP 48
           L++ +LF G+GG R  LEQ         F   ++++  P S K + A          +  
Sbjct: 12  LRVMELFAGVGGFRQGLEQVRTPAQQAAFKVVWANQYEPASKKQWAAEVYRARWGVQDLV 71

Query: 49  NTLIF---GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           N  IF    + A + + D    DVL+ GFPCQ +S A
Sbjct: 72  NEDIFEVLQEPALMASLDALCPDVLVGGFPCQDYSVA 108


>gi|241763153|ref|ZP_04761213.1| C-5 cytosine-specific DNA methylase [Acidovorax delafieldii 2AN]
 gi|241367778|gb|EER62032.1| C-5 cytosine-specific DNA methylase [Acidovorax delafieldii 2AN]
          Length = 536

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+        +P     GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 38 LEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSVA 97

Query: 83 G 83
          G
Sbjct: 98 G 98


>gi|121593710|ref|YP_985606.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|121593834|ref|YP_985730.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120605790|gb|ABM41530.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120605914|gb|ABM41654.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
          Length = 539

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+        +P     GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 38 LEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSVA 97

Query: 83 G 83
          G
Sbjct: 98 G 98


>gi|15838375|ref|NP_299063.1| DNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9106848|gb|AAF84583.1|AE003999_11 DNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 537

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+        +P     GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 38 LEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSVA 97

Query: 83 G 83
          G
Sbjct: 98 G 98


>gi|78047961|ref|YP_364136.1| DNA methyltransferase [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|78036391|emb|CAJ24082.1| DNA methyltransferase [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
          Length = 538

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+        +P     GD+  I  Q     +P  D+L+ G PCQ FS A
Sbjct: 38 LEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGTVPAPDILVGGTPCQSFSVA 97

Query: 83 G 83
          G
Sbjct: 98 G 98


>gi|156936516|ref|YP_001440431.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156534770|gb|ABU79595.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 415

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI 64
          DLF G GG    L +          +++EI+P   +TY  N P T++   DI ++    I
Sbjct: 20 DLFAGAGG----LSEGLREAGFTSLYANEISPRYAQTYAVNHPGTIVESRDIREVDAHKI 75

Query: 65 P--------DHDVLLAGFPCQPFS 80
                   + D++  G PCQ FS
Sbjct: 76 RNLLGLKRGELDLIAGGPPCQGFS 99


>gi|168207191|ref|ZP_02633196.1| modification methylase ScrFIB [Clostridium perfringens E str.
          JGS1987]
 gi|170661387|gb|EDT14070.1| modification methylase ScrFIB [Clostridium perfringens E str.
          JGS1987]
          Length = 310

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+KI +LF GIG  R  L        V+     EI+  +V++Y   F   L      K K
Sbjct: 1  MIKILELFGGIGSPRKALVNL--GVPVKAIDYVEIDKKAVRSYNEMFKKDL------KYK 52

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
          TQ +  +    D+L+ G PCQ FS AG
Sbjct: 53 TQSVVGYNLKPDILIHGSPCQSFSIAG 79


>gi|115386470|ref|XP_001209776.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190774|gb|EAU32474.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 597

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT--Q 62
           D FCG GG+     +   H      ++ +++ ++++TY  NFP T  +  D+    +   
Sbjct: 296 DAFCGAGGVSCGARKAGLHNE----WAVDVSQHALETYGLNFPTTDCWQADVNSFLSLNH 351

Query: 63  DIPDHDVLLAGFPCQPFSQA 82
           D    DVL    PCQPFS A
Sbjct: 352 DYLKVDVLHGSPPCQPFSPA 371


>gi|312278085|gb|ADQ62742.1| Cytosine-specific methyltransferase [Streptococcus thermophilus
          ND03]
          Length = 424

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTLIFGDI 56
          + + +LF G+GG R+ LE   N       +S++  P      + + Y  +FP++    + 
Sbjct: 1  MNVLELFAGVGGFRIGLENA-NPDYFRTLWSNQWEPSRKSQDAFEVYNYHFPDS----EN 55

Query: 57 AKIKTQDIPDH-------DVLLAGFPCQPFSQA 82
            I   DI D        D+++ GFPCQ +S A
Sbjct: 56 INISIADITDEQFAEMNADMIVGGFPCQDYSVA 88


>gi|296243020|ref|YP_003650507.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
 gi|296095604|gb|ADG91555.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
          Length = 323

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 24/93 (25%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCG GG  L    T   R +        NP  + TY+ NFP       + K+  +D
Sbjct: 6  VVDLFCGAGGFSLGFHLTRRFRTLLAI--DNYNPAGL-TYKLNFP-------MVKVLLED 55

Query: 64 IPDH--------------DVLLAGFPCQPFSQA 82
          I D               DVL+   PC+PF+ A
Sbjct: 56 IKDVNDSLLRKILGGAKIDVLIGSPPCEPFTGA 88


>gi|331002102|ref|ZP_08325621.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411196|gb|EGG90612.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 19/86 (22%)

Query: 6  DLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
          +LF GIG IR  L  Q   HR ++     EI+   VK+Y A +         A  K++DI
Sbjct: 2  ELFGGIGAIRKALIRQNIPHRVIDYV---EIDKNCVKSYNALYK--------ANFKSKDI 50

Query: 65 -----PDH--DVLLAGFPCQPFSQAG 83
               P+   D+L+ G PCQ FS+ G
Sbjct: 51 VGYHAPNENIDLLMHGSPCQDFSRVG 76


>gi|323484993|ref|ZP_08090347.1| hypothetical protein HMPREF9474_02098 [Clostridium symbiosum
          WAL-14163]
 gi|323401735|gb|EGA94079.1| hypothetical protein HMPREF9474_02098 [Clostridium symbiosum
          WAL-14163]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|291564095|emb|CBL42911.1| Site-specific DNA methylase [butyrate-producing bacterium SS3/4]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|256419690|ref|YP_003120343.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
 gi|256034598|gb|ACU58142.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
          Length = 390

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIF----GD 55
          +K+ DL+CG GG+ +  E T   +  E     +   ++VKT+  N P  N L       D
Sbjct: 4  IKVLDLYCGYGGLSMGFEFT---KAFEVVGGIDFYDWAVKTFYYNHPQLNKLKVINKPCD 60

Query: 56 IAKIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
          +  ++T ++        D+++ G PCQ FS AG
Sbjct: 61 MTNLETSEVLKDIGGKPDIIVGGPPCQGFSFAG 93


>gi|238923216|ref|YP_002936731.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238925032|ref|YP_002938548.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238874890|gb|ACR74597.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238876707|gb|ACR76414.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|160893193|ref|ZP_02073981.1| hypothetical protein CLOL250_00739 [Clostridium sp. L2-50]
 gi|160945817|ref|ZP_02093043.1| hypothetical protein FAEPRAM212_03350 [Faecalibacterium
          prausnitzii M21/2]
 gi|156865276|gb|EDO58707.1| hypothetical protein CLOL250_00739 [Clostridium sp. L2-50]
 gi|158443548|gb|EDP20553.1| hypothetical protein FAEPRAM212_03350 [Faecalibacterium
          prausnitzii M21/2]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|115345708|ref|YP_771887.1| DNA-cytosine methyltransferase, putative [Roseobacter
          denitrificans OCh 114]
 gi|115293028|gb|ABI93479.1| DNA-cytosine methyltransferase, putative [Roseobacter
          denitrificans OCh 114]
          Length = 394

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K  + F G G  R  L + +     +C F+++ +     TY+ N+ +  +I  DI  I
Sbjct: 10 MFKFYEFFAGGGMARAGLGEGW-----KCEFANDFDRKKGATYKKNWGDGEMIVDDIRNI 64

Query: 60 KTQDIPDH-DVLLAGFPCQPFS 80
             D+P H D++   FPCQ  S
Sbjct: 65 GLDDLPGHADLVWGSFPCQDLS 86


>gi|313115273|ref|ZP_07800751.1| C-5 cytosine-specific DNA methylase [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|310622412|gb|EFQ05889.1| C-5 cytosine-specific DNA methylase [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 338

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI------AKIK 60
          LF GIGG+ L  E        +C ++    PYS+   + ++PN   F DI      A  +
Sbjct: 9  LFSGIGGLDLAAEAAGFETVCQCEWADY--PYSI--LEQHWPNVPKFRDITTFTKEAFFE 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +    ++  GFPCQPFS  G
Sbjct: 65 KTGLETVTIISGGFPCQPFSSVG 87


>gi|291303703|ref|YP_003514981.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572923|gb|ADD45888.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis
          DSM 44728]
          Length = 552

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L I D FCG GG    ++       VE   ++     ++ ++ ANFP+     GDI K+ 
Sbjct: 3  LTIMDWFCGAGGSSQGIDAV---PGVEVTLAANHWQLALDSHAANFPHVDHKIGDIRKLP 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           QD P  D   A   C+ FS A
Sbjct: 60 VQDWPIADGFWASPECKKFSSA 81


>gi|326441740|ref|ZP_08216474.1| C-5 cytosine-specific DNA methylase [Streptomyces clavuligerus
          ATCC 27064]
          Length = 187

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I  L  G GG+ L ++     R     + ++  P + +    ++P     GDI+ +   D
Sbjct: 13 IGSLCSGYGGLDLGVQSVLGGRMA---WHADTAPGASRILARHWPGVPNLGDISVVSWAD 69

Query: 64 IPDHDVLLAGFPCQ 77
          +    VL AGFPCQ
Sbjct: 70 VQGVCVLTAGFPCQ 83


>gi|291557370|emb|CBL34487.1| Site-specific DNA methylase [Eubacterium siraeum V10Sc8a]
          Length = 361

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPAWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   V+  G PCQ  S  G
Sbjct: 60 GKIPPVHVITFGSPCQNLSLIG 81


>gi|224036442|pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
          Methyltransferase Encoded Within Prophage Cp-933r
          (E.Coli)
          Length = 376

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          L + DLF G+GG+ L   +       +   + EI+ +++ T+  NFP +L +  D++ + 
Sbjct: 3  LNVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLN 58

Query: 61 TQ--------DIPDHDVLLAGFPCQPFSQAG 83
           +        D+P  D ++ G PCQ FS  G
Sbjct: 59 AEIIKGFFKNDMP-IDGIIGGPPCQGFSSIG 88


>gi|189350232|ref|YP_001945860.1| DNA (cytosine-5-)-methyltransferase [Burkholderia multivorans
          ATCC 17616]
 gi|189334254|dbj|BAG43324.1| DNA (cytosine-5-)-methyltransferase [Burkholderia multivorans
          ATCC 17616]
          Length = 380

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          F SEI P+       ++P+    GD+   K       D+L+ G PCQ FS AG
Sbjct: 28 FVSEIEPFPCAVLAHHYPSVPNLGDMTNFKEWPDAAIDLLVGGTPCQSFSVAG 80


>gi|328543334|ref|YP_004303443.1| DNA methylase, C-5 cytosine-specific family [polymorphum gilvum
           SL003B-26A1]
 gi|326415695|gb|ADZ72758.1| DNA methylase, C-5 cytosine-specific family [Polymorphum gilvum
           SL003B-26A1]
          Length = 418

 Score = 39.7 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
           +  DLF G GG+ +     F          ++++P + +T++ NFP    F G ++K+  
Sbjct: 23  RCVDLFAGAGGLAVG----FRSAGWGIVAGNDVDPDAAQTFRLNFPEASFFEGPVSKLAA 78

Query: 62  QDI--------PDHDVLLAGFPCQPFSQ 81
            ++         D D L+ G PCQ FS 
Sbjct: 79  DELLADCGIERGDLDCLVGGPPCQSFSH 106


>gi|228478248|ref|ZP_04062856.1| modification methylase Sau3AI [Streptococcus salivarius SK126]
 gi|228249927|gb|EEK09197.1| modification methylase Sau3AI [Streptococcus salivarius SK126]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTLIFGDI 56
          + + +LF G+GG R+ LE   N       +S++  P      + + Y  +FP++    + 
Sbjct: 1  MNVLELFAGVGGFRIGLENA-NPDYFRTLWSNQWEPSRKSQDAFEVYNYHFPDS----EN 55

Query: 57 AKIKTQDIPDH-------DVLLAGFPCQPFSQA 82
            I   DI D        D+++ GFPCQ +S A
Sbjct: 56 INISIADITDEQFAEMNADMIVGGFPCQDYSVA 88


>gi|325270471|ref|ZP_08137073.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
 gi|324987194|gb|EGC19175.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
          Length = 398

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           + DLFCG GG+    E+       +     ++   ++ TYQ N  +  +   D++ I  +
Sbjct: 57  VLDLFCGCGGMSYGFEKA----GFDVLLGIDVWKDALVTYQHNHRSGGVLCADLSVITGK 112

Query: 63  DIPDH------DVLLAGFPCQPFSQAG 83
           ++  H      DV++ G PCQ FS AG
Sbjct: 113 EVGQHLGGKQVDVIIGGPPCQGFSVAG 139


>gi|261339110|ref|ZP_05966968.1| hypothetical protein ENTCAN_05324 [Enterobacter cancerogenus ATCC
          35316]
 gi|288318947|gb|EFC57885.1| modification methylase HgiDII [Enterobacter cancerogenus ATCC
          35316]
          Length = 355

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M K  DLFCG GG+   L+Q     N E   + E N  + +T++AN     +F  DI  I
Sbjct: 1  MFKAIDLFCGGGGLTEGLKQA----NFEVISAVENNISAAETFKANNRKCHLFQEDIRFI 56

Query: 60 KTQDIPDHD-------VLLAGF-PCQPFSQ 81
           +Q+I D          LLAG  PCQ FS 
Sbjct: 57 SSQEIMDKVGIKSGELSLLAGCPPCQGFSS 86


>gi|160881053|ref|YP_001560021.1| DNA-cytosine methyltransferase [Clostridium phytofermentans ISDg]
 gi|160429719|gb|ABX43282.1| DNA-cytosine methyltransferase [Clostridium phytofermentans ISDg]
          Length = 537

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ D FCG GG      + F     +  F+ +    +V TY+AN P   +I  D+ +I 
Sbjct: 1  MKVADFFCGAGG----FSEGFRQAGFDIVFAVDKWLPAVNTYKANKPMVNVIQDDVIRIS 56

Query: 61 T-------QDIPDHDVLLAGFPCQPFSQA 82
                  + +PD +V++   PC  FS +
Sbjct: 57 NLPDEEFEKLVPDTEVIIGSPPCVAFSNS 85


>gi|157961098|ref|YP_001501132.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846098|gb|ABV86597.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
          Length = 406

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 16/91 (17%)

Query: 4  ITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIK 60
          +  LF G GG+ + L E  F +R      S EI+  + KT + N P+  +   GDI K+ 
Sbjct: 1  MISLFSGAGGLDIGLCEAGFTNR-----LSVEIDEDAQKTLKLNQPSLKLATPGDIHKLT 55

Query: 61 TQDI-------PDHDVLLAGFP-CQPFSQAG 83
            ++       P    LLAG P CQPFS++G
Sbjct: 56 PSELLRQSGLQPKELTLLAGGPPCQPFSKSG 86


>gi|320094594|ref|ZP_08026360.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978509|gb|EFW10086.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 365

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 15/91 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           +I  LF G GG+ L  +Q          F+ +++P +++T++ NF +T+ +  D+ ++ +
Sbjct: 36  RIVSLFSGAGGLDLGFQQA----GFPLSFAVDLSPAAIETHRRNFQDTVAVEADLTELGS 91

Query: 62  QDIPDHDV----------LLAGFPCQPFSQA 82
             + +H            ++ G PCQ FS+A
Sbjct: 92  DGVLEHLAPILEPGESIGVIGGPPCQGFSRA 122


>gi|303239111|ref|ZP_07325641.1| C-5 cytosine-specific DNA methylase [Acetivibrio cellulolyticus
          CD2]
 gi|302593449|gb|EFL63167.1| C-5 cytosine-specific DNA methylase [Acetivibrio cellulolyticus
          CD2]
          Length = 632

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG    L    N   +   ++SEI P+ ++      P    +GDI KI  
Sbjct: 5  LTLGSLFDGSGG--FPLGALLN--GIVPIWASEIEPFPIRVTTKRLPFVKHYGDIRKING 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++  G PC   S AG
Sbjct: 61 AEIEPVDIITFGSPCTDMSVAG 82


>gi|9632084|ref|NP_048873.1| hypothetical protein PBCV1_A517L [Paramecium bursaria Chlorella
          virus 1]
 gi|1620188|gb|AAC96884.1| M.CviAII cytosine DNA methyltransferase [Paramecium bursaria
          Chlorella virus 1]
          Length = 344

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFS-SEINPYSVKTYQANFPNTLIFGDIAKI 59
          ML+  DLF GIGGI      T+  R +    +  E N  +    Q  +P+  +F D+   
Sbjct: 1  MLRALDLFSGIGGI------TYGLRGIVTPIAYVEKNEDARGFLQRKYPDVPVFDDVCTF 54

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
             +     D++ AG+PC  FS AG
Sbjct: 55 DAIEWKGKVDIITAGWPCTGFSTAG 79


>gi|296329951|ref|ZP_06872435.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305676676|ref|YP_003868348.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296152990|gb|EFG93855.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305414920|gb|ADM40039.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 488

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANF-PNTLIFGDI-- 56
          L++ DLF G GG      Q  NH N+  E   + EIN  +  T + +     +I GDI  
Sbjct: 5  LRVLDLFAGGGGFSTGFLQA-NHPNLKFEIIRAVEINQAASDTLRGHLGSEKVIQGDITN 63

Query: 57 AKIKT---QDIPDHDVLLAGFPCQPFSQAG 83
          + +K    Q   D DV++ G PCQ FS AG
Sbjct: 64 SDVKKEIFQSCGDIDVVIGGPPCQTFSLAG 93


>gi|125718611|ref|YP_001035744.1| modification methylase [Streptococcus sanguinis SK36]
 gi|125498528|gb|ABN45194.1| Modification methylase, putative [Streptococcus sanguinis SK36]
          Length = 408

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 49  NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           N L+  DI+++ +QD+PD D+L   FPCQ  S +G
Sbjct: 100 NNLV--DISEVHSQDLPDADILTYSFPCQDLSVSG 132


>gi|197124335|ref|YP_002136286.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
 gi|196174184|gb|ACG75157.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
          Length = 508

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGDIA 57
          DLFCG GG  L     F         + +I+  + +TY+ NF        P+ L  GD+ 
Sbjct: 10 DLFCGAGGFSLG----FRAAGALSLAAVDIDEVAARTYRRNFGKLQPGMAPHVLS-GDLG 64

Query: 58 KIKTQDIPD--H----DVLLAGFPCQPFSQAG 83
           ++  D+    H    D+L+ G PCQ FS+ G
Sbjct: 65 NLEEIDLGSIVHERTLDILIGGPPCQGFSRIG 96


>gi|223995915|ref|XP_002287631.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976747|gb|EED95074.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 319

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 52  IFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I GDI ++     P D D+L+AGFPCQPFS  G
Sbjct: 218 IHGDIYEVPDSAFPKDLDLLVAGFPCQPFSTLG 250


>gi|269941524|emb|CBI49922.1| phage C-5 cytosine-specific DNA methylase [Staphylococcus aureus
          subsp. aureus TW20]
          Length = 332

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+ +LF G+G   + L        +  F  +      +     N   +   GD+  + 
Sbjct: 1  MIKVLELFSGVGSFSISLNTLGIEHEIVGFSETRKTATQLFCKLHNKKESENLGDVRNVS 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D+ D D+L+ G PCQ F++AG
Sbjct: 61 AKDL-DVDLLVFGSPCQSFTRAG 82


>gi|186683285|ref|YP_001866481.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465737|gb|ACC81538.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 419

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 17/90 (18%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP 65
          LF G+GG  L     F     E   + + NP ++ TYQ NFP+ T++  DI ++  ++I 
Sbjct: 14 LFSGVGGFDLG----FKAAGFEIAIAIDNNPIALATYQHNFPHATVLCKDIREVTGEEIR 69

Query: 66 --------DHD----VLLAGFPCQPFSQAG 83
                  D D     +  G PCQ FS AG
Sbjct: 70 ACIQAKYGDWDGEIHTVFDGPPCQGFSVAG 99


>gi|254465219|ref|ZP_05078630.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
 gi|206686127|gb|EDZ46609.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
          Length = 437

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   + E++P     ++ NFP   +I   +  +   D+
Sbjct: 8  DLFSGAGGMSLGFEQA----GFDIVAAVELDPVHAAVHKYNFPECAVIPNSVTDVSGADV 63

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         DV+  G PCQ FS  G
Sbjct: 64 REAAGIGNKTVDVVFGGAPCQGFSLIG 90


>gi|297380299|gb|ADI35186.1| DNA-cytosine methyltransferase [Helicobacter pylori v225d]
          Length = 264

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +IK  D+PD DVL++GFPCQ FS  G
Sbjct: 2  RIKPNDLPDFDVLISGFPCQAFSING 27


>gi|266624606|ref|ZP_06117541.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288863534|gb|EFC95832.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 434

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG             +   ++SE+ P ++   + + P  +  GDI K+  + +P 
Sbjct: 9  LFDGIGG----FPYAALFYGIRPVWASEVLPTAISVTKRHIPEMVHVGDITKLDGRKLPP 64

Query: 67 HDVLLAGFPCQPFSQAG 83
           D++  G PCQ  S +G
Sbjct: 65 VDIITFGSPCQGLSISG 81


>gi|239624264|ref|ZP_04667295.1| DNA-cytosine methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520650|gb|EEQ60516.1| DNA-cytosine methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 470

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
           LF GIGG             +   ++SE+ P ++   + + P  +  GDI K+  + +P 
Sbjct: 45  LFDGIGG----FPYAALFYGIRPVWASEVLPTAISVTKRHIPEMVHVGDITKLDGRKLPP 100

Query: 67  HDVLLAGFPCQPFSQAG 83
            D++  G PCQ  S +G
Sbjct: 101 VDIITFGSPCQGLSISG 117


>gi|326790943|ref|YP_004308764.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326541707|gb|ADZ83566.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 292

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GI    + LE+      V+ +++SEI   S+K  + N+P  +  GDI  I T
Sbjct: 1  MNVLSLFDGISCGMVALERA--GIKVDNYYASEIEQDSIKISKKNYPWIIQLGDITNI-T 57

Query: 62 QDIPDH----DVLLAGFPCQPFS 80
          +++ D     D+++ G PCQ  S
Sbjct: 58 KEMLDTIMPIDIVIGGSPCQDLS 80


>gi|317180612|dbj|BAJ58398.1| Type II modification enzyme [Helicobacter pylori F32]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|217034513|ref|ZP_03439924.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
 gi|216943054|gb|EEC22533.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|13096616|pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
          Methyltransferase Homologue
          Length = 343

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 3  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 60

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D++L   PCQPF++ G
Sbjct: 61 LEEFDRLSFDMILMSPPCQPFTRIG 85


>gi|308063355|gb|ADO05242.1| site-specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|217033005|ref|ZP_03438476.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298736554|ref|YP_003729080.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945262|gb|EEC23940.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298355744|emb|CBI66616.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|188527304|ref|YP_001909991.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
 gi|188143544|gb|ACD47961.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTRLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|296393591|ref|YP_003658475.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180738|gb|ADG97644.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 372

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 34 EINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
          E +  +  T +ANFP+T +I GD+  +   +I    + D++  G PCQPFS AG
Sbjct: 33 EFDKNACATLRANFPDTPVIEGDVRGVDWSEIAAPGETDLVAGGPPCQPFSLAG 86


>gi|288932478|ref|YP_003436538.1| DNA-cytosine methyltransferase [Ferroglobus placidus DSM 10642]
 gi|288894726|gb|ADC66263.1| DNA-cytosine methyltransferase [Ferroglobus placidus DSM 10642]
          Length = 301

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI D+F G GG      + F     E   + +   ++V TY+ANF   +   D+     
Sbjct: 1  MKIADIFAGAGG----FARGFVEEKFEVVVAVDSFKHAVNTYKANFDADVFQVDVKNFSG 56

Query: 62 QDIPDHDV--LLAGFPCQPFSQA 82
          + + D+ V  ++A  PC+ F++A
Sbjct: 57 KMLKDYGVEMIIASPPCEAFTKA 79


>gi|315586485|gb|ADU40866.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
 gi|317178791|dbj|BAJ56579.1| Type II modification enzyme [Helicobacter pylori F30]
          Length = 327

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+      V   +   I P    TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKAGFKIVVANEYDKNITP----TYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|240142445|ref|YP_002966955.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
 gi|240012389|gb|ACS43614.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
          Length = 335

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L + DLF GIGGI L LE+    R +   F   +     +  + ++P+  I  D+  +  
Sbjct: 8  LTVLDLFSGIGGISLGLERAGPFRTIA--FCEALEARR-RILRRHWPDVPIHDDVRTLDG 64

Query: 62 QDI-----PDHDVLLAGFPCQPFSQAG 83
          +          DV+  GFPCQ  S AG
Sbjct: 65 RSFGAGSSRSVDVICGGFPCQDISLAG 91


>gi|171184904|ref|YP_001793823.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
 gi|170934116|gb|ACB39377.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
          Length = 462

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 18/92 (19%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------------P 48
          +  LF G GG+ L   Q+  +R     F++++   ++ TY  N                P
Sbjct: 6  VVSLFSGAGGLDLGFVQSGRYR---MLFANDVLSSALTTYAKNLDLKLELCSSRRTEARP 62

Query: 49 NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
             +  D+A++    + D DV++ G PCQ FS
Sbjct: 63 GVALVCDVAEVDFAPLGDVDVIVGGPPCQDFS 94


>gi|291528318|emb|CBK93904.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 344

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          M    +LF G GG+ L +E+  FN   +      E +  +  T + N PN  +I  DIA 
Sbjct: 1  MYTSIELFAGAGGLALGVEKAGFNTLGL-----IEFDKDAADTLKKNRPNWNVINDDIAN 55

Query: 59 IKTQDIPDH--------DVLLAGFPCQPFSQAG 83
          I   D+  +        D+L  G PCQ FS AG
Sbjct: 56 ISCLDLEKYFSIKKGELDLLSGGAPCQAFSYAG 88


>gi|218135211|ref|ZP_03464015.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990596|gb|EEC56607.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
          43243]
          Length = 344

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          M    +LF G GG+ L +E+  FN   +      E +  +  T + N PN  +I  DIA 
Sbjct: 1  MYTSIELFAGAGGLALGVEKAGFNTLGL-----IEFDKDAADTLKKNRPNWNVINDDIAN 55

Query: 59 IKTQDIPDH--------DVLLAGFPCQPFSQAG 83
          I   D+  +        D+L  G PCQ FS AG
Sbjct: 56 ISCLDLEKYFSIKKGELDLLSGGAPCQAFSYAG 88


>gi|207091855|ref|ZP_03239642.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori HPKX_438_AG0C1]
          Length = 109

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N + ++GDI +   
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNAIGVYGDITQTEI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK     + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQKLEINMIIGGPPCQGFSNKG 89


>gi|168018932|ref|XP_001761999.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686716|gb|EDQ73103.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 970

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           L +  LF G+GGI   L +    F+       +SSE+   +++  ++  P     GDI K
Sbjct: 354 LVVLSLFDGLGGIWQALTKLGIPFSG------YSSEVLAPAIQVVKSRHPRVKHVGDIRK 407

Query: 59  IKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +    +P+  D+++ GFPCQ  S  G
Sbjct: 408 LNLSAVPEKVDLVVGGFPCQDLSIMG 433


>gi|325685533|gb|EGD27624.1| modification methylase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 395

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 35  INPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + P  +K   A    T    DI K+   D+PD D+L   FPCQ  S AG
Sbjct: 70  MTPVQLKRILAAINRTNNLVDITKVHATDLPDGDILTYSFPCQDLSIAG 118


>gi|254470861|ref|ZP_05084264.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
 gi|211960003|gb|EEA95200.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
          Length = 498

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFG---DIAK 58
           ++ DLF G GG+ L     F+ +  E   + E++P++ +++  NF P         DI  
Sbjct: 19  RVLDLFAGCGGLSLG----FHSKGFEIAGAVELDPHAARSHGMNFHPGLETHAQPVDITS 74

Query: 59  IKTQDIP--------DH--DVLLAGFPCQPFSQAG 83
           +  +++         DH  D+++ G PCQ F++ G
Sbjct: 75  VGPEELAKKLSLGDTDHAIDIIIGGPPCQAFARVG 109


>gi|293392447|ref|ZP_06636769.1| site-specific DNA methylase [Serratia odorifera DSM 4582]
 gi|291425101|gb|EFE98308.1| site-specific DNA methylase [Serratia odorifera DSM 4582]
          Length = 379

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
          + F GIG  R  +EQ      ++  ++++ +      Y+ ++  + L+  DI  +K++D+
Sbjct: 16 EFFAGIGLSRAGMEQA----GIKTIWANDYDQNKKSMYEGHWKSHELLLADIHALKSEDL 71

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P  DV  A  PC   S AG
Sbjct: 72 PAADVAWASSPCTDLSLAG 90


>gi|225377327|ref|ZP_03754548.1| hypothetical protein ROSEINA2194_02974 [Roseburia inulinivorans
          DSM 16841]
 gi|225210858|gb|EEG93212.1| hypothetical protein ROSEINA2194_02974 [Roseburia inulinivorans
          DSM 16841]
          Length = 361

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+    GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMAHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   V+  G PCQ  S  G
Sbjct: 60 GKIPPVHVITFGSPCQNLSLIG 81


>gi|294667855|ref|ZP_06733064.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
 gi|292602358|gb|EFF45800.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
          Length = 410

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI 64
          DLF G GG    L +          +++EI+P   +TY  N P T +   DI K+  + +
Sbjct: 15 DLFAGAGG----LSEGLREAGFTSLYANEISPRYAQTYAVNHPGTQVDSQDIRKVDARKV 70

Query: 65 P--------DHDVLLAGFPCQPFS 80
                   + D++  G PCQ FS
Sbjct: 71 RKLLGLKRGELDLIAGGPPCQGFS 94


>gi|297621903|ref|YP_003710040.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
 gi|297377204|gb|ADI39034.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
          Length = 410

 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 33  SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +EI+  S  T + N P+  +I GDI  I  +     D L  GFPCQ FS AG
Sbjct: 104 NEIDKSSCMTLRKNRPSWNVIEGDIKSIDFRQFKGIDFLSGGFPCQAFSYAG 155


>gi|302520934|ref|ZP_07273276.1| phage DNA methylase [Streptomyces sp. SPB78]
 gi|302429829|gb|EFL01645.1| phage DNA methylase [Streptomyces sp. SPB78]
          Length = 190

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 18 LEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLA 72
          L+Q   H   +     +E +P + +   A  P+    GDI  +  Q    ++P    L A
Sbjct: 23 LDQAVEHVTGLTTVAVAEKDPAASRLLAARVPHARNLGDITAVDWQHVAAELPRPAALTA 82

Query: 73 GFPCQPFSQAG 83
          GFPCQ  S AG
Sbjct: 83 GFPCQDISNAG 93


>gi|225386628|ref|ZP_03756392.1| hypothetical protein CLOSTASPAR_00376 [Clostridium asparagiforme
          DSM 15981]
 gi|225047326|gb|EEG57572.1| hypothetical protein CLOSTASPAR_00376 [Clostridium asparagiforme
          DSM 15981]
          Length = 340

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 1  MLKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI-- 56
          M K+T   LF GIGG+ L  E        +C ++    P+SV +  A +P+   F DI  
Sbjct: 1  MNKLTHVSLFSGIGGLDLAAEAAGFETVCQCEWAD--FPHSVLS--ARWPDVPRFRDITT 56

Query: 57 ----AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              A  +   +    V+  GFPCQPFS AG
Sbjct: 57 FTKEAFFEKTGLETVTVISGGFPCQPFSTAG 87


>gi|291402254|ref|XP_002717405.1| PREDICTED: tRNA aspartic acid methyltransferase 1 [Oryctolagus
          cuniculus]
          Length = 367

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L+++     V    + ++N  + + Y+ NFP+TL+     +   
Sbjct: 4  LRVLELYSGIGGMHHALKESCVPAQV--VAAIDVNTVANEVYEYNFPHTLLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQ 81
          ++  D    +++L   PCQPF++
Sbjct: 62 LEEFDKLSFNMILMSPPCQPFTR 84


>gi|255279956|ref|ZP_05344511.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
 gi|255269729|gb|EET62934.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
          Length = 475

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----LIFGDIAK 58
           ++ DLFCG GG+ L     F         +++I    V TY  N P      +I GDI  
Sbjct: 103 RLVDLFCGAGGLSLG----FVQEGFAVSLANDIEECCVDTYAHNHPEVPESHIIRGDIHD 158

Query: 59  IKTQ---DIPDH--DVLLAGFPCQPFSQA 82
           +  +    + D   D+++ G PCQ FS A
Sbjct: 159 VAGELDDLLADRRVDIVIGGPPCQGFSMA 187


>gi|114629600|ref|XP_001151907.1| PREDICTED: DNA methyltransferase 2 isoform 5 [Pan troglodytes]
 gi|332833684|ref|XP_001151840.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 4 [Pan
          troglodytes]
 gi|29126973|gb|AAH47733.1| TRNA aspartic acid methyltransferase 1 [Homo sapiens]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|2895945|gb|AAC39764.1| putative DNA cytosine methyltransferase DNMT2 [Homo sapiens]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|4758184|ref|NP_004403.1| tRNA (cytosine-5-)-methyltransferase [Homo sapiens]
 gi|17374834|sp|O14717|TRDMT_HUMAN RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2; AltName: Full=DNA methyltransferase
          homolog HsaIIP; Short=DNA MTase homolog HsaIIP;
          Short=M.HsaIIP; AltName: Full=PuMet
 gi|2627431|gb|AAC51939.1| putative DNA methyltransferase [Homo sapiens]
 gi|2894544|emb|CAA11272.1| DNA methyltransferase [Homo sapiens]
 gi|7576230|emb|CAB87964.1| tRNA aspartic acid methyltransferase 1 [Homo sapiens]
 gi|47496579|emb|CAG29312.1| DNMT2 [Homo sapiens]
 gi|119606623|gb|EAW86217.1| hCG23994, isoform CRA_a [Homo sapiens]
 gi|158256270|dbj|BAF84106.1| unnamed protein product [Homo sapiens]
 gi|167887559|gb|ACA05983.1| tRNA aspartic acid methyltransferase 1 variant 3 [Homo sapiens]
 gi|167887563|gb|ACA05987.1| tRNA aspartic acid methyltransferase 1 variant 4 [Homo sapiens]
          Length = 391

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|323138162|ref|ZP_08073235.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322396624|gb|EFX99152.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 381

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 29 CFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
          C F+++ +    ++Y+AN+    +  GD+ +I T  +P   D++ A FPCQ  S AG
Sbjct: 27 CLFANDFDRKKAESYRANWGGGEMHVGDVREITTAQLPGRADLVWASFPCQDLSLAG 83


>gi|325696380|gb|EGD38271.1| modification methylase HgiDII [Streptococcus sanguinis SK160]
          Length = 358

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI 64
          DLF G GG    L+++     +    + EI+P +VKTY+ N P   +   DI  +   +I
Sbjct: 8  DLFSGAGGTTSGLKKS----GINVQVAIEIDPVAVKTYKLNNPEVYVIDRDIKLVSGDEI 63

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
            H         +L+A  PCQ FS  G
Sbjct: 64 KQHLKIGSDDKVMLVACPPCQGFSTIG 90


>gi|297812763|ref|XP_002874265.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata]
 gi|297320102|gb|EFH50524.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata]
          Length = 383

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L  +      VE F   EIN  +   YQ NF +    G+I  +  
Sbjct: 16 RVLEFYSGIGGMRYSLMASGVVAEVVEAF---EINDSANDVYQHNFKHRPYQGNIQSLTA 72

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +  D  L   PCQP+++ G
Sbjct: 73 VDLDKYNADAWLLSPPCQPYTRQG 96


>gi|77465763|ref|YP_355266.1| cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77390181|gb|ABA81365.1| Cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 443

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   + EI+P     ++ NFP+T +I   +  +  ++I
Sbjct: 7  DLFAGAGGLSLGFEQA----GFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEEI 62

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         D +  G PCQ FS  G
Sbjct: 63 RESAGIGNRPIDCVFGGPPCQGFSLIG 89


>gi|169826094|ref|YP_001696252.1| modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
 gi|168990582|gb|ACA38122.1| Modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 24/104 (23%)

Query: 4   ITDLFCGIGGIRLDLE--------------------QTFN---HRNV-ECFFSSEINPYS 39
           +  LF G GG+ L  E                    + F+   H++V    +++++   +
Sbjct: 61  VVGLFSGCGGLDLGFELAGLIAEIGEENAMTAFKNKEKFDEIRHKSVFNTIYTNDMFKEA 120

Query: 40  VKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +TY+ NFP+ +I  +    K  + P  +++L GFPC  FS+AG
Sbjct: 121 NETYKLNFPDHIIQHEKDIRKVANFPMCNLMLGGFPCPGFSEAG 164


>gi|315650253|ref|ZP_07903326.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
 gi|315487498|gb|EFU77807.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
          Length = 349

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLD-LEQTFNHRNVECF--FSSEINPYSVKTYQANF----PNTLIF 53
          + ++ +LFCG GGI    +  + N+ N      ++++ +  + KTY+ N     P T+  
Sbjct: 2  IFRLGELFCGPGGIGWGAINASINNPNYRIIHQWANDYDESTCKTYRYNICPNAPETVYH 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI       +   D L  GFPC  +S  G
Sbjct: 62 ADIRTFDMSQLAPIDALAFGFPCNDYSVVG 91


>gi|114629608|ref|XP_001151654.1| PREDICTED: DNA methyltransferase 2 isoform 1 [Pan troglodytes]
          Length = 377

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|320321292|gb|EFW77421.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
          str. B076]
          Length = 410

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI 64
          DLF G GG    L +          +++EI+P   +TY AN P+T +   DI ++  + +
Sbjct: 15 DLFAGAGG----LSEGLREAGFTSLYANEISPRYAQTYGANHPSTHVDNQDIREVDARKV 70

Query: 65 P--------DHDVLLAGFPCQPFS 80
                   + D++  G PCQ FS
Sbjct: 71 RKSLGLKRGELDLIAGGPPCQGFS 94


>gi|119511191|ref|ZP_01630308.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
 gi|119464179|gb|EAW45099.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
          Length = 432

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
          DLF G GG+ L  EQ       +   S EI+P    T++ NFP   +    + +  +Q+I
Sbjct: 10 DLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHEFNFPFWRVLCKPVEETTSQEI 65

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
                     DV+  G PCQ FS  G
Sbjct: 66 RQSSSIGDREIDVVFGGPPCQGFSLIG 92


>gi|291618481|ref|YP_003521223.1| Bsp6IM [Pantoea ananatis LMG 20103]
 gi|291153511|gb|ADD78095.1| Bsp6IM [Pantoea ananatis LMG 20103]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          + F GIG  R  +EQ      ++  ++++ +      Y+ ++ +   +  DI  +K++++
Sbjct: 16 EFFAGIGLARAGMEQA----GIKTVWANDYDVNKKAMYEGHWQSADFLLADIHSLKSEEL 71

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PD DV  A  PC   S AG
Sbjct: 72 PDADVAWASSPCTDLSLAG 90


>gi|160873497|ref|YP_001552813.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|160859019|gb|ABX47553.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|315265725|gb|ADT92578.1| DNA-cytosine methyltransferase [Shewanella baltica OS678]
          Length = 385

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 24/96 (25%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
          +K  DLF G GG+ L   Q      ++   + E++  +  TY+AN       P  LI GD
Sbjct: 1  MKAIDLFSGAGGLSLAAHQC----GIDVIAAIELDTAASITYRANLIEQLKAPTKLINGD 56

Query: 56 IAKIKTQDIP-----------DHDVLLAGFPCQPFS 80
          I ++   D+P           + ++LL G PCQ FS
Sbjct: 57 INEV---DLPALMKELKLKSGELELLLGGPPCQGFS 89


>gi|86137701|ref|ZP_01056277.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
 gi|85825293|gb|EAQ45492.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
          Length = 319

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ML   +L  G GG  L LE+  F+H  +      EI+ +   T + N PN  +  +  ++
Sbjct: 1  MLTSVELCAGAGGQALGLERAGFDHTAL-----VEIDKHCCATLRHNRPNWNVLEEDLRL 55

Query: 60 KTQDIPDH---DVLLAGFPCQPFSQAG 83
             D   +   D+L  G PC PFS AG
Sbjct: 56 FKDDASAYKGIDLLAGGLPCPPFSVAG 82


>gi|331000405|ref|ZP_08324080.1| DNA (cytosine-5-)-methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329571737|gb|EGG53417.1| DNA (cytosine-5-)-methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 392

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTL------IFG 54
           L + ++F G GGI L L QT   + + +  ++++ +  + +TY+ N    +      I  
Sbjct: 31  LTVGEMFSGPGGIGLALNQTKRGKLSFKHLWATDYDSDTCETYRKNIFTGIHKEALSICK 90

Query: 55  DIAKIK-TQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++   +++P  D  L GFPC  FS  G
Sbjct: 91  DIREVDIAKELPQADGFLYGFPCNDFSNVG 120


>gi|291301680|ref|YP_003512958.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570900|gb|ADD43865.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis DSM
           44728]
          Length = 329

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 28  ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           E  + ++ +P + +      P+    GDI     +D    D+L+AG PCQP S+AG
Sbjct: 50  ELAWVADTDPDAARVLTHRHPHAPNLGDIRTAPWEDAEPVDILVAGVPCQPVSKAG 105


>gi|34451612|gb|AAQ72361.1| BsaWI methylase [Geobacillus stearothermophilus]
          Length = 411

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L I D F G GGI       F     E   + E+    V+TY AN  +  +I  DI  + 
Sbjct: 5  LHIIDCFSGPGGIC----TGFRAAGFETLLAIELVESCVETYTANHKDVPVINKDIRDVT 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           +++         D+L AG PC+ FS AG
Sbjct: 61 EEEVKRIVGNRVVDILTAGMPCETFSTAG 89


>gi|321476287|gb|EFX87248.1| hypothetical protein DAPPUDRAFT_187425 [Daphnia pulex]
          Length = 341

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          ++I +L+ GIGG+    E    +   E  FS +IN  +   Y+ NF  T     +I  + 
Sbjct: 6  MRILELYSGIGGMHYAAE--LANVGAEVVFSVDINTSANAVYRHNFKQTNQQARNIESLS 63

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           ++I     D+++   PCQPF++ G
Sbjct: 64 AKEINKLRPDIIMMSPPCQPFTRVG 88


>gi|163941367|ref|YP_001646251.1| C-5 cytosine-specific DNA methylase [Bacillus weihenstephanensis
          KBAB4]
 gi|163863564|gb|ABY44623.1| C-5 cytosine-specific DNA methylase [Bacillus weihenstephanensis
          KBAB4]
          Length = 251

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +          ++     EI  ++    + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISM----AAGWAGIDTAAFCEIEEFNQSVLRKNYPNIPIFPDLYKLTK 56

Query: 62 Q-------DIPDHDVLLAGFPCQPFSQAG 83
          Q       D+    V+ AG+PCQ  S  G
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESLVG 85


>gi|327309192|ref|XP_003239287.1| hypothetical protein TERG_01268 [Trichophyton rubrum CBS 118892]
 gi|326459543|gb|EGD84996.1| hypothetical protein TERG_01268 [Trichophyton rubrum CBS 118892]
          Length = 622

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  T  +
Sbjct: 320 DGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLTKHSEVAQFLTS-L 374

Query: 65  PDH---DVLLAGFPCQPFSQA 82
           P     DV+    PCQPFS A
Sbjct: 375 PREILVDVMHVSPPCQPFSPA 395


>gi|156937913|ref|YP_001435709.1| DNA-cytosine methyltransferase [Ignicoccus hospitalis KIN4/I]
 gi|156566897|gb|ABU82302.1| DNA-cytosine methyltransferase [Ignicoccus hospitalis KIN4/I]
          Length = 315

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
          DLF G GG  L  E        E     + +    ++Y AN P  L +  D++K+ ++ I
Sbjct: 7  DLFSGAGGFALGFEMA----GFEGVLGVDNDKAPARSYAANHPKALTLVEDVSKLSSKTI 62

Query: 65 P----DHDVLLAGFPCQPFSQA 82
               D DV++   PC+P++ A
Sbjct: 63 ERLVGDVDVVIGSPPCEPYTAA 84


>gi|237753192|ref|ZP_04583672.1| cytosine specific DNA methyltransferase [Helicobacter
          winghamensis ATCC BAA-430]
 gi|229375459|gb|EEO25550.1| cytosine specific DNA methyltransferase [Helicobacter
          winghamensis ATCC BAA-430]
          Length = 354

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          ++ DLFCG GG    ++Q   +   E   + +    ++ T+  NFP   +I GDI  IK 
Sbjct: 7  RVLDLFCGAGGFSSGIDQ---NPYFETLLALDFEQSAINTFSHNFPKAQVICGDITDIKI 63

Query: 62 QDI-------PDHDVLLAGFPCQPFSQAG 83
          ++           ++++ G PCQ FS  G
Sbjct: 64 KNTLIKQAKRLKVNMIIGGPPCQGFSLKG 92


>gi|15801798|ref|NP_287816.1| putative DNA modification methyltransferase encoded within
          prophage CP-933R [Escherichia coli O157:H7 EDL933]
 gi|15831207|ref|NP_309980.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|217329077|ref|ZP_03445157.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          TW14588]
 gi|12515382|gb|AAG56430.1|AE005370_3 putative DNA modification methyltransferase encoded within
          prophage CP-933R [Escherichia coli O157:H7 str. EDL933]
 gi|13361418|dbj|BAB35376.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|217317516|gb|EEC25944.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          TW14588]
 gi|323179669|gb|EFZ65230.1| modification methylase XorII [Escherichia coli 1180]
 gi|326343203|gb|EGD66970.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          1044]
          Length = 383

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + + DLF G+GG+ L   +       +   + EI+ +++ T+  NFP +L +  D++ + 
Sbjct: 1  MNVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLN 56

Query: 61 TQ--------DIPDHDVLLAGFPCQPFSQAG 83
           +        D+P  D ++ G PCQ FS  G
Sbjct: 57 AEIIKGFFKNDMP-IDGIIGGPPCQGFSSIG 86


>gi|91089179|ref|XP_974235.1| PREDICTED: similar to DNA cytosine-5 methyltransferase [Tribolium
           castaneum]
          Length = 579

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           ++I +L+ GIGG+   L+ +     ++   + +INP +   Y+ NFP+  L+  ++  + 
Sbjct: 251 MEILELYSGIGGMHWALKVSGVEGTIKA--AVDINPTANSVYKHNFPHINLLNRNVQSLT 308

Query: 61  TQDIPDHDV--LLAGFPCQPFSQAG 83
            Q I    V  +L   PCQPF++ G
Sbjct: 309 PQFINKLGVNTILMSPPCQPFTRNG 333


>gi|323693680|ref|ZP_08107879.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
 gi|323502294|gb|EGB18157.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
          Length = 303

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C    E   + ++  + ++P    F DI  +  +   +
Sbjct: 9  LFSGIGGIDLAAEAAGFTTVCQC----EWADFPMEVLKKHWPQVPKFKDITTVTKEAFFE 64

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 65 KTGRETTTLISGGFPCQPFSSAG 87


>gi|51892448|ref|YP_075139.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856137|dbj|BAD40295.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 486

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 21/98 (21%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-- 60
           ++ DLF G GG+ L     F     E   + E++P++ +++  NF     F   AK +  
Sbjct: 14  RVLDLFAGCGGLSLG----FQRAGFEILAAVEMDPHAARSHAINFHPGDRFDLHAKPRDI 69

Query: 61  TQDIPDH---------------DVLLAGFPCQPFSQAG 83
           +Q+ PD                D+++ G PCQ +++ G
Sbjct: 70  SQEQPDQVLGELYPGERAEDLVDIIIGGPPCQAYARVG 107


>gi|227547415|ref|ZP_03977464.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212062|gb|EEI79958.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 433

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLE-------QTFNHR---NVECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L+         F+ +   + +  ++++  P       ++ + Y+
Sbjct: 13  IRIAELFAGVGGFRLGLDGYHDAAHPEFDMKPAGDFKTVWANQWEPNGQESKQFAWRCYE 72

Query: 45  ANF-PNTLIFGDIA------KIKTQDIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA      K   + IP+ D+L+ GFPCQ +S A
Sbjct: 73  KRFGEGSCVNEDIAVVLQEVKDGKRSIPEFDMLVGGFPCQDYSVA 117


>gi|303285424|ref|XP_003062002.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226456413|gb|EEH53714.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 338

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIAKIKTQD 63
          + +CG+GG+   L +      V   F  ++NP++  TY  NF +    I  ++A      
Sbjct: 16 EFYCGVGGLHYALLRARPDATVAAAF--DLNPHACDTYAFNFGDAARPIARNLASYPAAS 73

Query: 64 IPDH--DVLLAGFPCQPFSQAG 83
          I  H   + L   PCQPF++ G
Sbjct: 74 IDAHAASLWLLSPPCQPFTRQG 95


>gi|198422315|ref|XP_002126359.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha [Ciona
           intestinalis]
          Length = 678

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    + L+Q      ++ F +SEI+  +++  Q   P  +  GDI K+  
Sbjct: 386 IRVLSLFDGIATGVVALKQL--GLQIQKFVASEIDEAAIRLVQNRHPEVMHVGDITKLTD 443

Query: 62  QDIPDH---DVLLAGFPCQPFSQA 82
            DI  +   D+++ G PC   S A
Sbjct: 444 DDITRYGPFDLVMGGSPCNDLSGA 467


>gi|23465149|ref|NP_695752.1| modification methylase Sau3AI [Bifidobacterium longum NCC2705]
 gi|189440221|ref|YP_001955302.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|23325769|gb|AAN24388.1| modification methylase Sau3AI [Bifidobacterium longum NCC2705]
 gi|189428656|gb|ACD98804.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 423

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLE-------QTFNHR---NVECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L+         F+ +   + +  ++++  P       ++ + Y+
Sbjct: 3   IRIAELFAGVGGFRLGLDGYHDAAHPEFDMKPAGDFKTVWANQWEPNGQESKQFAWRCYE 62

Query: 45  ANF-PNTLIFGDIA------KIKTQDIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA      K   + IP+ D+L+ GFPCQ +S A
Sbjct: 63  KRFGEGSCVNEDIAVVLQEVKDGKRSIPEFDMLVGGFPCQDYSVA 107


>gi|46019826|emb|CAE52348.1| putative cytosine-specific methyltransferase [Streptococcus
          thermophilus]
          Length = 365

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 17/91 (18%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-----IFGDIAK 58
          + DLF G GG    L Q F           + +  ++KTY+ N  +++     +F + + 
Sbjct: 6  VVDLFSGAGG----LSQGFKQAGFNILMGVDFDDPALKTYKHNLKDSVALKADLFDEESA 61

Query: 59 IKTQDIPDH------DVLLAGFPCQPFSQAG 83
          IK  DI ++      DV++AG PCQ FS  G
Sbjct: 62 IK--DIENNLNGNKIDVIIAGPPCQGFSLTG 90


>gi|121698875|ref|XP_001267835.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
           NRRL 1]
 gi|119395977|gb|EAW06409.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
           NRRL 1]
          Length = 2150

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 14  IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QD 63
           +R    + F+ R++   FS+EI P+     + NF    +F D+A++K           + 
Sbjct: 136 LRKHFRKNFDFRHL---FSAEIVPFKQAYIERNFHPRFLFRDVAQLKDRVAQTAYGSLEK 192

Query: 64  IPDH-DVLLAGFPCQPFS 80
           IP + D+L+AGF C  FS
Sbjct: 193 IPKNADLLIAGFSCVDFS 210


>gi|322377723|ref|ZP_08052213.1| modification methylase HgiDII [Streptococcus sp. M334]
 gi|321281488|gb|EFX58498.1| modification methylase HgiDII [Streptococcus sp. M334]
          Length = 351

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLFCG+GG+   ++Q      +      +I+  S   Y+ N     I  DI  I+ 
Sbjct: 3  INAVDLFCGVGGLTYGIQQA----GINVVAGYDIDEKSKFAYEYNNDAKFILKDINGIED 58

Query: 62 QDI-------PDHDVLLAGFPCQPFS 80
           +I        D  VL+   PCQPFS
Sbjct: 59 DEILGLYPSDTDIKVLIGCAPCQPFS 84


>gi|226330016|ref|ZP_03805534.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
 gi|225200811|gb|EEG83165.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
          Length = 325

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 33 SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
          +EI+ ++  T + N P   +I GD+A I   +     DVL  GFPCQ FS AG
Sbjct: 3  NEIDKHACNTLRLNRPKWNVIEGDVAGIDFSEYKGKVDVLAGGFPCQAFSYAG 55


>gi|169794286|ref|YP_001712079.1| putative cytosine-specific methyltransferase [Acinetobacter
          baumannii AYE]
 gi|213159140|ref|YP_002321138.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|215481844|ref|YP_002324026.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
          HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332850048|ref|ZP_08432435.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013150]
 gi|332871527|ref|ZP_08440021.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013113]
 gi|169147213|emb|CAM85072.1| putative cytosine-specific methyltransferase [Acinetobacter
          baumannii AYE]
 gi|213058300|gb|ACJ43202.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|213986404|gb|ACJ56703.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
          HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332730897|gb|EGJ62203.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013150]
 gi|332731381|gb|EGJ62673.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013113]
          Length = 355

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG    L Q      ++     + +  + +TYQANFP  L +  DI ++ 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDITIGLDFDIKAAETYQANFPEALFYNVDIRELD 56

Query: 61 TQDIP----------DHDVLLAGFPCQPFS 80
           +++           +  + +A  PCQPFS
Sbjct: 57 EKELAKAFKEKNREKEPLLFVACAPCQPFS 86


>gi|42779446|ref|NP_976693.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
 gi|42735362|gb|AAS39301.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLD-LEQTFNHRNVECF--FSSEINPYSVKTYQANF----PNTLIF 53
          + ++ +LFCG GGI    +  +    N      ++++ +  + +TY+ N     PNT+  
Sbjct: 2  IFRLGELFCGPGGIAWGAMNASIEDPNFAIVHQWANDYDADTCETYRLNICPDTPNTVYH 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI K     +   D L  GFPC  +S  G
Sbjct: 62 ADIRKFDMSKLAPIDALAFGFPCNDYSVVG 91


>gi|270012712|gb|EFA09160.1| DNA methyltransferase 2 [Tribolium castaneum]
          Length = 329

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          ++I +L+ GIGG+   L+ +     ++   + +INP +   Y+ NFP+  L+  ++  + 
Sbjct: 1  MEILELYSGIGGMHWALKVSGVEGTIKA--AVDINPTANSVYKHNFPHINLLNRNVQSLT 58

Query: 61 TQDIPDHDV--LLAGFPCQPFSQAG 83
           Q I    V  +L   PCQPF++ G
Sbjct: 59 PQFINKLGVNTILMSPPCQPFTRNG 83


>gi|124486003|ref|YP_001030619.1| hypothetical protein Mlab_1183 [Methanocorpusculum labreanum Z]
 gi|124363544|gb|ABN07352.1| DNA-cytosine methyltransferase [Methanocorpusculum labreanum Z]
          Length = 352

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          D FCG GGI   L        ++     +I+P   +TY+ N  N  +  DI  I   +I 
Sbjct: 13 DFFCGGGGITKGLSDA----GIKVLGGIDISPDLKRTYEENNHNKFVNFDIRTISGSNIY 68

Query: 65 --------PDHDVLLAG-FPCQPFSQ 81
                   + ++LLAG  PCQPFS+
Sbjct: 69 KEFPEIEGDEDNLLLAGCAPCQPFSK 94


>gi|1709163|sp|P50188|MTN1_NOCAE RecName: Full=Modification methylase NaeI; Short=M.NaeI; AltName:
          Full=Cytosine-specific methyltransferase NaeI
 gi|775103|gb|AAC43325.1| NaeI modification methyltransferase [Lechevalieria
          aerocolonigenes]
          Length = 413

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          L++ ++  G GG  L LE+  F+HR      + E++  +  T + N   + +I GD+A  
Sbjct: 4  LEVVEICAGAGGQALGLEKAGFSHR-----LAVELDVNAAATLRKNLKSDVVITGDVADP 58

Query: 60 KTQDIPDH---DVLLAGFPCQPFSQAG 83
             +  +H    +L  G PC PFS AG
Sbjct: 59 SVLNPMEHLGVSLLAGGVPCPPFSIAG 85


>gi|328958689|ref|YP_004376075.1| DNA-methyltransferase [Carnobacterium sp. 17-4]
 gi|328675013|gb|AEB31059.1| DNA-methyltransferase [Carnobacterium sp. 17-4]
          Length = 431

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTL-IFGD 55
            I +LF G+GG R+  E + N    +  ++++  P      + + Y  ++P ++ I  +
Sbjct: 5  FNILELFAGVGGFRVGFENS-NESMFKTKWANQWEPAKKSQDAFEVYDYHYPESMNINEN 63

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I +I  +     D D+++ GFPCQ +S A
Sbjct: 64 IEEISDEAFQSMDADIIVGGFPCQDYSVA 92


>gi|313886494|ref|ZP_07820210.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312924040|gb|EFR34833.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 351

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L +      ++     +++      Y+ N     I+ DI  +  ++
Sbjct: 5  VVDLFCGIGGLSYGLREA----GLQILAGYDLDQTCAFAYERNNNAQFIYKDIRMVSGKE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSTLLAETDVKVLAGCAPCQPFS 83


>gi|306821027|ref|ZP_07454646.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
 gi|304550968|gb|EFM38940.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
          Length = 317

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + + +LF GIG +R  L  Q   H+ V+     EI+   VK+Y A +       DI K  
Sbjct: 9  VNVLELFGGIGALRKALIRQKIPHKVVDYV---EIDKNCVKSYNALYNADFTPKDIVKYH 65

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
              P+   D+L+ G PCQ FS+ G
Sbjct: 66 A---PNERVDLLMHGSPCQDFSRIG 87


>gi|317010333|gb|ADU84080.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SouthAfrica7]
          Length = 361

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AKI 59
          KI DLFCG GG    LE+    +        + +  ++ T++ N  N + I GDI  A I
Sbjct: 4  KILDLFCGAGGFSAGLERL---KEFSALIGLDCDKQALNTFENNHKNAVGICGDITQAGI 60

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
          K + I      + ++++ G PCQ FS  G
Sbjct: 61 KEKVIELAKKLEINMIIGGPPCQGFSNKG 89


>gi|304390603|ref|ZP_07372556.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326359|gb|EFL93604.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 309

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L+  DLF G GG+ L  E        +   + E    +++ Y+ANF +  +  D++ +  
Sbjct: 7  LRCVDLFSGCGGMSLGFEMA----GFDVVAAYENWAPALRVYRANFDHPAVEQDLSNVAE 62

Query: 61 -----TQDIPDHDVLLAGFPCQPFSQAG 83
               TQ  P  D+++ G PCQ FS AG
Sbjct: 63 SVESITQFEP--DLVIGGPPCQDFSTAG 88


>gi|254475144|ref|ZP_05088530.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
 gi|214029387|gb|EEB70222.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
          Length = 324

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          ML   +L  G GG  L LE+  F H  +      EI+ +   T + N P   ++  D+ K
Sbjct: 1  MLTSVELCAGAGGQALGLEKAGFEHTAL-----VEIDKHCCATLRHNRPKWNVLEEDVRK 55

Query: 59 IKTQDIPDH----DVLLAGFPCQPFSQAG 83
           K  D+ D     D+L  G PC PFS AG
Sbjct: 56 FK--DVADSYHGIDLLAGGLPCPPFSVAG 82


>gi|327535475|gb|AEA94309.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis OG1RF]
          Length = 363

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANF----PNTLIFG 54
           K+ +LFCG GGI L    + +      ++  ++++ +  + +TY  N     P T+I  
Sbjct: 3  FKLGELFCGPGGIALGAMTSQSDDGIYKIDHAWANDFDKDTCQTYINNICPEKPETVICE 62

Query: 55 DIAKI---KTQDIPDHDVLLAGFPCQPFSQAG 83
          DI K+   K + I D D L  GFPC  FS  G
Sbjct: 63 DIRKLDFRKLKRISDIDGLAFGFPCNDFSIVG 94


>gi|325971313|ref|YP_004247504.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
 gi|324026551|gb|ADY13310.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
          Length = 516

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTF-NHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
          ++ DLF G GG    L Q F N  N     + E N Y+ +T + N   T      L + D
Sbjct: 4  RVLDLFAGAGG----LSQGFKNAGNFSIAVAIENNKYAQETCRENHKETTMLSDVLDYSD 59

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           +  KT+   + DV++ G PCQ FS A
Sbjct: 60 FSDFKTK-YGEFDVVIGGPPCQGFSNA 85


>gi|319645695|ref|ZP_07999926.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
 gi|317392242|gb|EFV73038.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
          Length = 327

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 18/89 (20%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFG 54
          M+KI +LF GIG  R  L     +H+ ++     EI+  +V+ Y A +     P +++  
Sbjct: 1  MIKILELFGGIGAPRKALVNLGVDHKAIDYV---EIDEKAVRAYNALYDHRYKPQSVVGY 57

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          D+           DVL+ G PCQ FS+AG
Sbjct: 58 DLRP---------DVLVHGSPCQDFSRAG 77


>gi|220926789|ref|YP_002502091.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219951396|gb|ACL61788.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 358

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLFCG GG+ L          ++   S + +P    +Y  N P + LI  D+A +  +
Sbjct: 2  LIDLFCGCGGLSLGARSA----GLKVTLSVDNDPILTSSYTFNHPQSRLILADVADLSGR 57

Query: 63 DIPDH-----DVLLAGFPCQPFSQAG 83
           +        D ++ G PCQ FS+ G
Sbjct: 58 YLRRAAGGYIDGIVGGPPCQGFSEIG 83


>gi|86134515|ref|ZP_01053097.1| DNA (cytosine-5-)-methyltransferase [Polaribacter sp. MED152]
 gi|85821378|gb|EAQ42525.1| DNA (cytosine-5-)-methyltransferase [Polaribacter sp. MED152]
          Length = 583

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L + D FCG GG      Q    + +E F      P ++ TY  NF       DI K K 
Sbjct: 4  LTVIDFFCGAGGFSEGFRQV-GFKILEGF--DNWQP-AINTYNYNFDTESKLTDILKFKD 59

Query: 61 ----TQDIPDHDVLLAGFPCQPFSQA 82
                ++PD D+++   PC  FS +
Sbjct: 60 SLEEIDNLPDSDIIIGSPPCVSFSSS 85


>gi|145218883|ref|YP_001129592.1| DNA-cytosine methyltransferase [Prosthecochloris vibrioformis DSM
          265]
 gi|145205047|gb|ABP36090.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM
          265]
          Length = 377

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
          L   +LFCG GG+ + L +   H       ++EI P    T+  N P T +        D
Sbjct: 5  LNAVELFCGAGGLSIGLSRAGFH----IALANEIEPDFAATFSLNHPETKMLNEDIHDID 60

Query: 56 IAK--IKTQDIPDHDVLLAGFPCQPFSQAG 83
           A+  +KT  I D  ++  G PCQ FS  G
Sbjct: 61 FARESLKT-GITDVTLVSGGPPCQGFSTVG 89


>gi|194098027|ref|YP_002001075.1| methylase [Neisseria gonorrhoeae NCCP11945]
 gi|239998490|ref|ZP_04718414.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|240013615|ref|ZP_04720528.1| methylase [Neisseria gonorrhoeae DGI18]
 gi|240016054|ref|ZP_04722594.1| methylase [Neisseria gonorrhoeae FA6140]
 gi|240080196|ref|ZP_04724739.1| methylase [Neisseria gonorrhoeae FA19]
 gi|240112409|ref|ZP_04726899.1| methylase [Neisseria gonorrhoeae MS11]
 gi|240115149|ref|ZP_04729211.1| methylase [Neisseria gonorrhoeae PID18]
 gi|240117433|ref|ZP_04731495.1| methylase [Neisseria gonorrhoeae PID1]
 gi|240120685|ref|ZP_04733647.1| methylase [Neisseria gonorrhoeae PID24-1]
 gi|240122989|ref|ZP_04735945.1| methylase [Neisseria gonorrhoeae PID332]
 gi|240125241|ref|ZP_04738127.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|240127695|ref|ZP_04740356.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493209|ref|ZP_05106380.1| methylase [Neisseria gonorrhoeae 1291]
 gi|260441033|ref|ZP_05794849.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|268594349|ref|ZP_06128516.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|268596345|ref|ZP_06130512.1| methylase [Neisseria gonorrhoeae FA19]
 gi|268598472|ref|ZP_06132639.1| methylase [Neisseria gonorrhoeae MS11]
 gi|268600825|ref|ZP_06134992.1| methylase [Neisseria gonorrhoeae PID18]
 gi|268603130|ref|ZP_06137297.1| methylase [Neisseria gonorrhoeae PID1]
 gi|268681611|ref|ZP_06148473.1| methylase [Neisseria gonorrhoeae PID332]
 gi|268683839|ref|ZP_06150701.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268686080|ref|ZP_06152942.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044365|ref|ZP_06570074.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|293399551|ref|ZP_06643704.1| methylase [Neisseria gonorrhoeae F62]
 gi|193933317|gb|ACF29141.1| methylase [Neisseria gonorrhoeae NCCP11945]
 gi|226512249|gb|EEH61594.1| methylase [Neisseria gonorrhoeae 1291]
 gi|268547738|gb|EEZ43156.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|268550133|gb|EEZ45152.1| methylase [Neisseria gonorrhoeae FA19]
 gi|268582603|gb|EEZ47279.1| methylase [Neisseria gonorrhoeae MS11]
 gi|268584956|gb|EEZ49632.1| methylase [Neisseria gonorrhoeae PID18]
 gi|268587261|gb|EEZ51937.1| methylase [Neisseria gonorrhoeae PID1]
 gi|268621895|gb|EEZ54295.1| methylase [Neisseria gonorrhoeae PID332]
 gi|268624123|gb|EEZ56523.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268626364|gb|EEZ58764.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011259|gb|EFE03255.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|291610120|gb|EFF39242.1| methylase [Neisseria gonorrhoeae F62]
 gi|317163768|gb|ADV07309.1| methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 112

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--KIKTQD 63
           DLF GIGG R+ ++    +   E  FSSE +  +  TY+ANF   + FGDI   +IK Q 
Sbjct: 44  DLFAGIGGFRIAMQ----NLGGEYVFSSEWDEKAKLTYEANF-GEVPFGDITLEEIK-QY 97

Query: 64  IPDHDVLLAGF 74
           IP    +L GF
Sbjct: 98  IPKQFDVLCGF 108


>gi|171779450|ref|ZP_02920414.1| hypothetical protein STRINF_01295 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282067|gb|EDT47498.1| hypothetical protein STRINF_01295 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 133

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K  DLF GIGG RL L      +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGL----TRQGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQD 63
            QD
Sbjct: 60 TDQD 63


>gi|169825537|ref|YP_001695712.1| modification methylase [Lysinibacillus sphaericus C3-41]
 gi|168994814|gb|ACA42353.1| Modification methylase [Lysinibacillus sphaericus C3-41]
          Length = 296

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F G GG+ L + +      ++   S EI+  +  T + NF + +   DI KI   D  D 
Sbjct: 19 FSGAGGLDLGIIEA----GIDVIESFEIDKKACNTLRNNFKHIINETDITKITVLDQQDA 74

Query: 68 DVLLAGFPCQPFS 80
          DV +  FPC  +S
Sbjct: 75 DVYIGTFPCTKYS 87


>gi|251788110|ref|YP_003002831.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
 gi|247536731|gb|ACT05352.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
          Length = 490

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI- 59
          ML+   +  GI  + L  E       ++  + SE++P+        +P+    GDI +I 
Sbjct: 9  MLQYGSVCSGIEAVSLAWEPL----GLQAAWFSEVDPFPNAVLAHRYPHIPNLGDITRIA 64

Query: 60 ---KTQDIPDHDVLLAGFPCQPFSQAG 83
             +  ++   D+L+ G PCQ FS AG
Sbjct: 65 DRVQNGEVTAPDILVGGTPCQAFSIAG 91


>gi|225862883|ref|YP_002748261.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225787129|gb|ACO27346.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 367

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          KI DLF G+GG  L  E        E  F+ +    ++ TY  N    + +  DIA +  
Sbjct: 5  KIMDLFSGVGGFSLGFEMA----GYETIFAIDFWKDAIATYNLNRKKDIAVHMDIANLTN 60

Query: 62 QDI----PDHDV--LLAGFPCQPFSQAG 83
          + +     +HD+  ++ G PCQ FS  G
Sbjct: 61 EHLRKLKEEHDIEGIIGGPPCQGFSTVG 88


>gi|251789087|ref|YP_003003808.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
 gi|247537708|gb|ACT06329.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
          Length = 411

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          + F G G  R  L + +     +C F+++++P    TY  N+ +      D+ ++   ++
Sbjct: 24 EFFAGGGMARAGLGKQW-----QCLFANDMDPIKASTYIDNWGDEHFDIRDVREVAPDEL 78

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P H D+  A FPCQ  S AG
Sbjct: 79 PLHADLSWASFPCQDLSLAG 98


>gi|304407248|ref|ZP_07388901.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus
          YK9]
 gi|304343689|gb|EFM09530.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus
          YK9]
          Length = 401

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M K+ DLF G GG    L + F     +   S EI+  +  T + N P T +   D+ ++
Sbjct: 1  MYKVLDLFSGCGG----LGEGFLQAGFDIAASVEIDEKACATQKFNHPETQVLQADLTQL 56

Query: 60 KTQD------IPDHDVLLAGFPCQPFSQAG 83
            +D      I + D+++ G PCQ FS  G
Sbjct: 57 APRDLSLATGITNFDLIIGGPPCQGFSLIG 86


>gi|228917967|ref|NP_142059.2| modification methylase [Pyrococcus horikoshii OT3]
          Length = 312

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG  L  + +   R V    S    P   +TY  NFP   ++  DI  +  +
Sbjct: 12 VIDLFAGAGGFSLGFKLS-GFRIVSAIES--FRP-KAETYSINFPEAKVVVRDIKAVNPR 67

Query: 63 DIPDH-DVLLAGFPCQPFS 80
          +I +  DV++ G PC+PF+
Sbjct: 68 EIAEKVDVIIGGPPCEPFT 86


>gi|315917403|ref|ZP_07913643.1| type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691278|gb|EFS28113.1| type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
          Length = 320

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 2  LKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +KI +LF GIG IR   + Q   H+ ++     EI+   VK+Y A + NT    D     
Sbjct: 7  IKIIELFGGIGAIRKAFIRQKIPHQVIDYV---EIDKNCVKSYNALY-NT----DFKPKS 58

Query: 61 TQDI--PDH--DVLLAGFPCQPFSQAG 83
            D   PD   D+L+ G PCQ FS++G
Sbjct: 59 ILDFHPPDERIDLLMHGSPCQDFSRSG 85


>gi|289423000|ref|ZP_06424820.1| modification methylase ScrFIB [Peptostreptococcus anaerobius
          653-L]
 gi|289156574|gb|EFD05219.1| modification methylase ScrFIB [Peptostreptococcus anaerobius
          653-L]
          Length = 329

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 19/90 (21%)

Query: 2  LKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQA----NF-PNTLIFGD 55
          +KI +LF GIG IR   + Q   H+ ++     EI+   VK+Y A    NF P ++++  
Sbjct: 18 IKIIELFGGIGAIRKAFIRQKIPHQVIDYV---EIDKNCVKSYNALYNTNFKPKSILYFH 74

Query: 56 IAKIKTQDIPDH--DVLLAGFPCQPFSQAG 83
                   PD   D+L+ G PCQ FS++G
Sbjct: 75 P--------PDEKIDLLMHGSPCQDFSRSG 96


>gi|229824476|ref|ZP_04450545.1| hypothetical protein GCWU000282_01799 [Catonella morbi ATCC 51271]
 gi|229786077|gb|EEP22191.1| hypothetical protein GCWU000282_01799 [Catonella morbi ATCC 51271]
          Length = 414

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 49  NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           N L+  DI KI  QD+P+ D+L   FPCQ  S +G
Sbjct: 103 NNLV--DITKIHAQDLPEADILTYSFPCQDLSISG 135


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 14/68 (20%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIP---DH-DVLLA 72
           VE  FSSE+ P+     Q NF   L+F D+ ++            +D+P   DH DVL+A
Sbjct: 333 VEHIFSSEVEPFKQAYIQRNFAPPLLFRDVRELGNKRAHTAFGALEDVPQDRDHFDVLIA 392

Query: 73  GFPCQPFS 80
           G  C  +S
Sbjct: 393 GTSCVDYS 400


>gi|209875617|ref|XP_002139251.1| DNA (cytosine-5)-methyltransferase domain-containing protein
          [Cryptosporidium muris RN66]
 gi|209554857|gb|EEA04902.1| DNA (cytosine-5)-methyltransferase domain-containing protein
          [Cryptosporidium muris RN66]
          Length = 422

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 1  MLKITDLFCGIGGIRLDL----EQTFNHR---NVECFFSSEINPYSVKTYQANFPNTLI- 52
          ML +T L  GIGG+ L L    E+   H    +++   + E+N      Y+ +F +T + 
Sbjct: 1  MLNLTSLD-GIGGLHLSLKYAIEKLVEHGQAIDIKVIKAFELNENCNNIYKRHFKDTQVC 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             I  +   DIP  ++ L G PCQPF++ G
Sbjct: 60 TKSIESLNIDDIPKANIWLLG-PCQPFTRGG 89


>gi|302504717|ref|XP_003014317.1| C-5 cytosine methyltransferase DmtA [Arthroderma benhamiae CBS
           112371]
 gi|291177885|gb|EFE33677.1| C-5 cytosine methyltransferase DmtA [Arthroderma benhamiae CBS
           112371]
          Length = 644

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  T  +
Sbjct: 281 DGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLAEHSEVAQFLTS-L 335

Query: 65  PDH---DVLLAGFPCQPFSQA 82
           P     DV+    PCQPFS A
Sbjct: 336 PRELLVDVMHVSPPCQPFSPA 356


>gi|283457186|ref|YP_003361755.1| site-specific DNA methylase [Rothia mucilaginosa DY-18]
 gi|283133170|dbj|BAI63935.1| site-specific DNA methylase [Rothia mucilaginosa DY-18]
          Length = 439

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--------CFFSSEINP-------YSVKTYQ-- 44
           +++ +LF G+GG RL  E  +N   +           ++++  P       ++ + YQ  
Sbjct: 12  IRVIELFAGVGGFRLGFE-GYNANGMTLPSAGPFTTVWANQWEPPGTVGRQFAARCYQER 70

Query: 45  ----ANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFS 80
               AN  N  I    D  +    +IPD D+L  GFPCQ +S
Sbjct: 71  FGEEANLENRDIHAVLDDVEAGLYEIPDADLLCGGFPCQDYS 112


>gi|296112182|ref|YP_003622593.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
 gi|294341994|emb|CAZ90422.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
          Length = 304

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K  DLF G GG      Q      VE  +++   P +V  + AN P  +    D+ +  
Sbjct: 1  MKAIDLFSGAGGFTEGARQA----GVEVCWAANHWPAAVACHSANHPEAVHACQDLEQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HDVL+A   CQ  S A
Sbjct: 57 WRAVPAHDVLMASPACQGHSPA 78


>gi|302654293|ref|XP_003018954.1| C-5 cytosine methyltransferase DmtA [Trichophyton verrucosum HKI
           0517]
 gi|291182644|gb|EFE38309.1| C-5 cytosine methyltransferase DmtA [Trichophyton verrucosum HKI
           0517]
          Length = 582

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 9/81 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  T  +
Sbjct: 280 DGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLAEHSEVAQFLTS-L 334

Query: 65  PDH---DVLLAGFPCQPFSQA 82
           P     DV+    PCQPFS A
Sbjct: 335 PRELLVDVMHVSPPCQPFSPA 355


>gi|170077471|ref|YP_001734109.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
 gi|169885140|gb|ACA98853.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 413

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
          DLF G GG+ L LE        +   + EI+P     ++ NFP  + F  DI  ++  ++
Sbjct: 9  DLFAGCGGMSLGLEAA----GFDVVAAVEIDPVHALVHEVNFPYGVTFCRDIRHLQWPEM 64

Query: 65 -----------PDHDVLLAGFPCQPFSQAG 83
                      D D+L  G PCQ FS  G
Sbjct: 65 RQAIERRGYSTADIDLLTGGPPCQGFSVMG 94


>gi|323454936|gb|EGB10805.1| hypothetical protein AURANDRAFT_62303 [Aureococcus anophagefferens]
          Length = 1635

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 15  RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP----DHDVL 70
           R  L + F  R        EI+  +++  +A  P+ L  GD A+++ +++P     + ++
Sbjct: 836 RGQLSKAFALRGARIVAVGEIDETALEMLRAEHPDALAMGDTARLEYRNVPWSRHAYRIV 895

Query: 71  LAGFPCQPFSQAG 83
             GFPCQ  +  G
Sbjct: 896 CGGFPCQMVAPQG 908


>gi|323447623|gb|EGB03537.1| hypothetical protein AURANDRAFT_67921 [Aureococcus anophagefferens]
          Length = 675

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 15  RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP----DHDVL 70
           R  L + F  R        EI+  +++  +A  P+ L  GD A+++ +++P     + ++
Sbjct: 217 RGQLSKAFALRGARIVAVGEIDETALEMLRAEHPDALAMGDTARLEYRNVPWSRHAYRIV 276

Query: 71  LAGFPCQPFSQAG 83
             GFPCQ  +  G
Sbjct: 277 CGGFPCQMVAPQG 289


>gi|127440|sp|P24600|MTD1_HERAU RecName: Full=Modification methylase HgiDI; Short=M.HgiDI;
          AltName: Full=Cytosine-specific methyltransferase HgiDI
 gi|43482|emb|CAA38938.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 309

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          +K  DLF G GG+ L   Q       E   + +    ++ TYQ NF + +   D+A+I  
Sbjct: 1  MKTIDLFAGCGGMSLGFMQA----GFEIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDA 56

Query: 61 -TQDIPDH--DVLLAGFPCQPFSQAG 83
              I  H  ++++ G PCQ FS AG
Sbjct: 57 AVSLIKTHSPELIIGGPPCQDFSSAG 82


>gi|309379397|emb|CBX21964.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 195

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG +    EQ F   N+     F+ +I+ +  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIGAV----EQAFYRLNLNHTIVFAGDIDSHVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|308803765|ref|XP_003079195.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
 gi|116057650|emb|CAL53853.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
          Length = 840

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          +E +P+  +   A FP   +  D+A++    + D D +LAGFPC   S
Sbjct: 42 AEKDPHCKQVLAARFPGVALLNDVAEVLPSMLTDIDCILAGFPCNDCS 89


>gi|170719133|ref|YP_001784281.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827262|gb|ACA32633.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 408

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
           +++   F GIG I    EQ F    +     F+ +I+P+  K+Y AN+         DI 
Sbjct: 34  IRLATTFSGIGAI----EQAFKRLELNHCIVFAGDIDPHVKKSYLANYDLSEEHWHSDIT 89

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
                   D  D+L+ G PCQ FS  G
Sbjct: 90  TFDAIPYRDQVDILVGGSPCQAFSMVG 116


>gi|257466246|ref|ZP_05630557.1| Type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
          Length = 327

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 2  LKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +KI +LF GIG IR   + Q   H+ ++     EI+   VK+Y A + NT    D     
Sbjct: 14 IKIIELFGGIGAIRKAFIRQKIPHQVIDYV---EIDKNCVKSYNALY-NT----DFKPKS 65

Query: 61 TQDI--PDH--DVLLAGFPCQPFSQAG 83
            D   PD   D+L+ G PCQ FS++G
Sbjct: 66 ILDFHPPDERIDLLMHGSPCQDFSRSG 92


>gi|167630968|ref|YP_001681467.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
 gi|167593708|gb|ABZ85456.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
          Length = 667

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG    L    N   +   ++SEI P+ ++      P    +GDI+ I  
Sbjct: 5  LTLGSLFDGSGG--FPLGAVLN--GITPVWASEIEPFPIRVTTRRLPQMKHYGDISCING 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++  G PC   S AG
Sbjct: 61 TEIEPVDIISFGSPCTDMSVAG 82


>gi|254825117|ref|ZP_05230118.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL
          J1-194]
 gi|293594360|gb|EFG02121.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL
          J1-194]
          Length = 326

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 16/87 (18%)

Query: 2  LKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          LKI +LF GIG  R  L      H++++     EI+  +V+ Y A +  T        I+
Sbjct: 4  LKILELFGGIGAPRKALINLGIEHKSIDYV---EIDEKAVRAYNALYDKT--------IQ 52

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
           Q +  +    D+L+ G PCQ FS+AG
Sbjct: 53 PQSVVGYNLRPDLLIHGSPCQDFSRAG 79


>gi|26990617|ref|NP_746042.1| DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
 gi|24985601|gb|AAN69506.1|AE016584_14 DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
          Length = 553

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIK----TQDIPDHDVLLAGFPCQPFSQAG 83
          +EI P+       ++P T   GD+ ++     +  IP  +VL+ G PCQ FS AG
Sbjct: 30 AEIEPFPCAVLAHHYPATPNHGDMTRLAAMVLSGKIPAPEVLVGGTPCQAFSVAG 84


>gi|458402|gb|AAA50432.1| M-XorII [Xanthomonas oryzae]
          Length = 424

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 19/90 (21%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------------F 53
          DLF G GG+ L  EQ       +   + +I+P     ++ NFP                 
Sbjct: 8  DLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTRSEL 63

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            IA I  +DI   D+++ G PCQ FS  G
Sbjct: 64 RRIAGIGKRDI---DIVIGGAPCQGFSLIG 90


>gi|42783651|ref|NP_980898.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
 gi|42739580|gb|AAS43506.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
          Length = 362

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 7  LFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           F G GG+ + + +  F+ R      S E+ P   +T + N PN  ++ GDI     + +
Sbjct: 6  FFAGAGGLDMGIHKAGFDVR-----VSVELEPVYCETLRTNHPNWNVVEGDIMTYTPEQV 60

Query: 65 PDH--------DVLLAGFPCQPFSQAG 83
           +         D+++ G PCQ FS AG
Sbjct: 61 LEQADLQEGEVDLMIGGSPCQSFSTAG 87


>gi|258574543|ref|XP_002541453.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901719|gb|EEP76120.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 726

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 11/63 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-DVLLAGFPCQP 78
            FS+EI P+     Q NF   ++F D++++            + +P + D+L+AGF C  
Sbjct: 176 LFSAEIEPFKQSYIQRNFSPDILFRDVSELVNNEATTAFGSVRTVPTNPDLLVAGFSCVD 235

Query: 79  FSQ 81
           FSQ
Sbjct: 236 FSQ 238


>gi|190571759|ref|YP_001966438.1| M2.LlaJI [Lactococcus lactis]
 gi|46487640|gb|AAS99178.1| M2.LlaJI [Lactococcus lactis]
          Length = 379

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L+   LF  +G     L++      V+   ++EI+    + YQ  +PNT +I GDI +  
Sbjct: 4  LRGLSLFANVGIAEAFLDEI----GVDIKIANEIDKERARFYQDVYPNTNMICGDITEDT 59

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQAG 83
          T+D+        D D ++A  PCQ  S+AG
Sbjct: 60 TRDLIVDLAIKEDVDFVIATPPCQGMSEAG 89


>gi|228471277|ref|ZP_04056083.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
 gi|228306919|gb|EEK16017.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
          Length = 351

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L +      ++     +++      Y+ N     I+ DI  +  ++
Sbjct: 5  VVDLFCGIGGLSYGLREA----GLQILAGYDLDQTCAFAYERNNNAQFIYKDIRLVSGKE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSTLLAETDVKVLAGCAPCQPFS 83


>gi|26990694|ref|NP_746119.1| DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
 gi|24985686|gb|AAN69583.1|AE016592_2 DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
          Length = 348

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
           K+  LFCG GG+ L     F     +  F+++ + Y+V+TY  N P       D+ +   
Sbjct: 24  KLVSLFCGAGGLDLG----FIDAGFDVVFAADHDRYAVETYNHNHPGQRASKVDLLETSP 79

Query: 62  QDIPDHDVLLAGF-----------PCQPFSQA 82
           +++    VL  GF           PCQ FS+A
Sbjct: 80  EELYKRSVLEPGFEGAIHGIIGGPPCQGFSRA 111


>gi|288919493|ref|ZP_06413824.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
 gi|288349096|gb|EFC83342.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
          Length = 640

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 11/85 (12%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
           DLF G GG+ L LEQ           + + N  +V+T++ANF    +  D+++   ++  
Sbjct: 45  DLFSGAGGLSLGLEQA----GWTVVTAVDDNLRAVETHRANFRGRAVQLDLSEPAARNEL 100

Query: 65  ------PDHDVLLAGFPCQPFSQAG 83
                    D++  G PCQP+S+AG
Sbjct: 101 LASLAGVKIDLVAGGPPCQPYSRAG 125


>gi|281425045|ref|ZP_06255958.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Prevotella oris F0302]
 gi|281400889|gb|EFB31720.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Prevotella oris F0302]
          Length = 412

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
          F  EI+ +        +PN++ + +I K          DVL  GFPCQPFS AG
Sbjct: 30 FHCEISKFCNTILNYWYPNSIGYENIKKTDFSKWQGKIDVLTGGFPCQPFSSAG 83


>gi|213691014|ref|YP_002321600.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213522475|gb|ACJ51222.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320457065|dbj|BAJ67686.1| putative DNA methylase [Bifidobacterium longum subsp. infantis
          ATCC 15697]
          Length = 390

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIK 60
          + F GIG  RL LE+   H      +S++I+    + Y+  F N     TLI GD+ ++ 
Sbjct: 20 EFFAGIGLARLGLEEAGFH----VAWSNDIDHAKCQMYRNQFGNNEQEHTLIEGDMGELH 75

Query: 61 TQDIPDHDVLLA--GFPCQPFSQAG 83
            D+P H++ +A    PC   S AG
Sbjct: 76 GSDLP-HNISIAWGSSPCTDISLAG 99


>gi|254932546|ref|ZP_05265905.1| cytosine methyl transferase [Listeria monocytogenes HPB2262]
 gi|293584103|gb|EFF96135.1| cytosine methyl transferase [Listeria monocytogenes HPB2262]
 gi|332310737|gb|EGJ23832.1| DNA (Cytosine-5-)-methyltransferase [Listeria monocytogenes str.
          Scott A]
          Length = 351

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI +I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKEIS 57

Query: 61 TQDIP-------DHDVLLAGFPCQPFS 80
            +I        D  +L+   PCQPFS
Sbjct: 58 DDEISALYPENTDIRLLMGCAPCQPFS 84


>gi|18202008|sp|O31073|MTS1_STRAH RecName: Full=Modification methylase SacI; Short=M.SacI; AltName:
           Full=Cytosine-specific methyltransferase SacI
 gi|2605794|gb|AAC97118.1| SacI methylase [Streptomyces achromogenes]
          Length = 390

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 2   LKITDLFCGIGGIRLDLE--------QTFNHRNVECFFSSEINPYSVKTYQANFPNT-LI 52
           L +  LF G GG+   +E        Q  +   +    +++    ++ T  ANFP+T  +
Sbjct: 5   LPVISLFSGAGGLDCAIESCAEPPLVQDGSGSPLRVAVATDYEQTALDTLSANFPHTKTL 64

Query: 53  FGDIAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
            GDI  I T ++         D  +++ G PC PFS++G
Sbjct: 65  CGDIQTIPTAELLEAGGLKPGDPTLVIGGPPCTPFSKSG 103


>gi|12275200|emb|CAC22275.1| cytosine methyl transferase [Listeria monocytogenes]
          Length = 352

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI +I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKEIS 57

Query: 61 TQDIP-------DHDVLLAGFPCQPFS 80
            +I        D  +L+   PCQPFS
Sbjct: 58 DDEISALYPENTDIRLLMGCAPCQPFS 84


>gi|2894386|emb|CAA74996.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
          (C1) [Bacillus pumilus]
          Length = 398

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT--- 61
          DLF G GG+ L  E        E   + EI+ ++V TY+ N  N+ +I  DI +I     
Sbjct: 12 DLFAGAGGMSLGFENA----GFEIPLAVEIDDWAVDTYRKNRENSNVIKNDILEIDNAFF 67

Query: 62 QDIPDHDVLLAGFPCQPFS 80
          +     D ++ G PCQ FS
Sbjct: 68 KQFSGIDAVIGGPPCQGFS 86


>gi|330936955|gb|EGH41063.1| HsdRM [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 313

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M     LF G GG    + +       +   +++I  Y+ + Y AN P T  I G +  I
Sbjct: 1  MPSAVSLFSGCGGSDAGILRA----GFDVLMANDIMHYAREVYLANHPETDYIRGSVTTI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++ P  ++L+  +PCQ FSQ G
Sbjct: 57 --ENFPAAELLVGCYPCQGFSQGG 78


>gi|317157659|ref|XP_001826363.2| C-5 cytosine-specific DNA methylase [Aspergillus oryzae RIB40]
          Length = 2165

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 14/78 (17%)

Query: 14  IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QD 63
           +R    + F  R++   FS+EI PY  +    NF   L+F D+ ++K           + 
Sbjct: 129 LRKHFNRDFKFRHL---FSAEIVPYKQRYIDNNFHPRLLFRDVTQLKDRVAQTAYGSLEK 185

Query: 64  IP-DHDVLLAGFPCQPFS 80
           +P + D+L+AGF C  FS
Sbjct: 186 VPRNPDMLIAGFSCVDFS 203


>gi|301382137|ref|ZP_07230555.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
          Length = 320

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI+P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIDPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIDAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|290968468|ref|ZP_06560007.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781464|gb|EFD94053.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
          Length = 699

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNT-LIFGDI-- 56
            +I DLFCG GG+   +     H+N       + +IN    +T++ N P + LI GDI  
Sbjct: 338 FRILDLFCGAGGMSYGM-----HKNSHFVTKVALDINEKLAQTFKENIPESELIIGDIQD 392

Query: 57  AKIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
             IK + I        ++++ G PCQ FS  G
Sbjct: 393 KAIKEKIINLSKKNKVNMIIGGPPCQGFSLKG 424


>gi|213968059|ref|ZP_03396204.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|213927039|gb|EEB60589.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 584

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI+P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIDPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIDAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|311977248|gb|ADQ20503.1| M.BbvI [Brevibacillus brevis]
          Length = 367

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 6  DLFCGIGGIRLDL-EQTFNHRNV-ECF-----FSSEINPYSVKTYQANF----PNTLIFG 54
          +LFCG GG+ L   E  + H    E F     ++++I+ ++ +T++ N     P++++ G
Sbjct: 7  ELFCGPGGLALGAKEAKYMHPETGEVFEFEHAWANDIDEWACETFRTNICPDRPDSVVCG 66

Query: 55 DIAKIKTQDIPDH----DVLLAGFPCQPFSQAG 83
          D+ ++  + + +     D    GFPC  +S  G
Sbjct: 67 DVRELDIKSLGEKFGEIDAFTFGFPCNDYSIVG 99


>gi|284051998|ref|ZP_06382208.1| cytosine-specific methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835461|gb|ABB52090.1| Mod [Arthrospira platensis]
 gi|291568828|dbj|BAI91100.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 411

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          DLF G GG+ L LE        +   + E +      +  NFP    I GDI+++K+ +I
Sbjct: 9  DLFAGCGGMSLGLEAA----GFDVAVAVEFDAVHCLVHHFNFPYCHTICGDISQVKSAEI 64

Query: 65 PDH----------DVLLAGFPCQPFSQAG 83
           D           D++  G PCQ FS  G
Sbjct: 65 LDQLQLKYGHTEVDLIAGGPPCQGFSHIG 93


>gi|462647|sp|P34905|MTB1_BREBE RecName: Full=Modification methylase BbvI; Short=M.BbvI; AltName:
          Full=Cytosine-specific methyltransferase BbvI
          Length = 374

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 6  DLFCGIGGIRLDL-EQTFNHRNV-ECF-----FSSEINPYSVKTYQANF----PNTLIFG 54
          +LFCG GG+ L   E  + H    E F     ++++I+ ++ +T++ N     P++++ G
Sbjct: 7  ELFCGPGGLALGAKEAKYMHPETGEVFEFEHAWANDIDEWACETFRTNICPDRPDSVVCG 66

Query: 55 DIAKIKTQDIPDH----DVLLAGFPCQPFSQAG 83
          D+ ++  + + +     D    GFPC  +S  G
Sbjct: 67 DVRELDIKSLGEKFGEIDAFTFGFPCNDYSIVG 99


>gi|153933427|ref|YP_001385281.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153933974|ref|YP_001384769.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153935154|ref|YP_001386762.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|153935271|ref|YP_001386815.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|153937696|ref|YP_001388073.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152929471|gb|ABS34971.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152930018|gb|ABS35518.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152931068|gb|ABS36567.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152931185|gb|ABS36684.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152933610|gb|ABS39109.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
          Length = 315

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 12/87 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  L        V+     EI+  +V++Y A F   L +      K
Sbjct: 1  MIQILELFGGIGAPRKALINL--GVPVKAIDYVEIDEKAVRSYNAIFHKDLAY------K 52

Query: 61 TQDIPDH----DVLLAGFPCQPFSQAG 83
          TQ +  +    D+L+ G PCQ FS AG
Sbjct: 53 TQSVVGYNLKPDILIHGSPCQDFSIAG 79


>gi|167771959|ref|ZP_02444012.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
          17241]
 gi|167665757|gb|EDS09887.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
          17241]
          Length = 520

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++SE+  + ++  +  FP+    GDI +I    I   D++  G PCQ  S AG
Sbjct: 30 WASEVEKFPIEVTKKRFPHMEHLGDITRIDGAKIRPVDIITFGSPCQDLSVAG 82


>gi|296206224|ref|XP_002750114.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 3
          [Callithrix jacchus]
          Length = 345

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQ 81
           Q  D    D++L   PCQPF++
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTR 84


>gi|296206222|ref|XP_002750113.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 2
          [Callithrix jacchus]
          Length = 367

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQ 81
           Q  D    D++L   PCQPF++
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTR 84


>gi|302531731|ref|ZP_07284073.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302440626|gb|EFL12442.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 357

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIKTQD 63
          +F G+GG+ L  E+       E   + E +  +  T + NFP+   ++I  DI  + T +
Sbjct: 10 VFSGVGGLDLGAEKA----GFEVRAAVERDVNAADTMRKNFPHLAGSVICADILDVPTTE 65

Query: 64 I---------PDHDVLLAGFPCQPFSQAG 83
          I            D+L+ G PC PFS++G
Sbjct: 66 IMAAAGLSRRERPDLLIGGPPCTPFSKSG 94


>gi|73948982|ref|XP_848593.1| PREDICTED: similar to DNA (cytosine-5)-methyltransferase-like
          protein 2 (Dnmt2) (DNA methyltransferase homolog
          HsaIIP) (DNA MTase homolog HsaIIP) (M.HsaIIP) (PuMet)
          isoform 2 [Canis familiaris]
          Length = 391

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    +++L   PCQPF++ G
Sbjct: 62 LEEFDKLSFNMILMSPPCQPFTRIG 86


>gi|313667096|gb|ADR72993.1| M1.BspMI [Bacillus sp. M(2010)]
          Length = 348

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L + DLF G GG+ +  E+      +     ++IN    KT++ NFPN      DI ++ 
Sbjct: 3  LLVVDLFSGAGGLHIGFEKA--GFEIGLCIDNDIN--VEKTHKYNFPNIPFMNVDIKELS 58

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
          +  +       + DVL+ G PCQ FS  G
Sbjct: 59 SDQVRNIIGNREVDVLIGGPPCQGFSTIG 87


>gi|308061350|gb|ADO03238.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          Cuz20]
          Length = 355

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          KI DLFCG GG    LE+    +  +     + +  ++ T++ N  N T + GDI +I+ 
Sbjct: 4  KILDLFCGAGGFSAGLERL---KEFDALIGLDCDKQALITFENNHKNATGVCGDITQIEI 60

Query: 62 QD-------IPDHDVLLAGFPCQPFSQAG 83
          ++           ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLKINMIIGGPPCQGFSNKG 89


>gi|57867437|ref|YP_189088.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis RP62A]
 gi|57638095|gb|AAW54883.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis RP62A]
          Length = 335

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++K+ +LF G+G   + L        +  F  +      +     N   +   GD+  + 
Sbjct: 4  LIKVLELFSGVGSFSISLNTLGIEHEIVGFSETRKTATQLFCKLHNKKESENLGDVRNVS 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D+ D D+L+ G PCQ F++AG
Sbjct: 64 AKDL-DVDLLVFGSPCQSFTRAG 85


>gi|326428358|gb|EGD73928.1| hypothetical protein PTSG_05624 [Salpingoeca sp. ATCC 50818]
          Length = 512

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
           L++ + + GIGG+   L+       V   F  +IN  + K Y+ NFP T ++      I 
Sbjct: 18  LRVLEFYSGIGGMHAALKVADPTARVLRAF--DINDTANKVYRHNFPETPVWQRLIESIP 75

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + + +     D+ L   PCQPF++ G
Sbjct: 76  RERFEGKLQADMYLMSPPCQPFTRTG 101


>gi|255548992|ref|XP_002515552.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223545496|gb|EEF47001.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 404

 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +I + + GIGG+R  L +   N + +E F   +IN  +   Y+ NF +    G+I  +  
Sbjct: 14 RILEFYSGIGGMRYSLMKAGVNAKVMEAF---DINNIANDAYEHNFGHRPYQGNIQSLTA 70

Query: 62 QDIPD---HDVLLAGFPCQPFSQAG 83
           D+     H  LL+  PCQP+++ G
Sbjct: 71 ADLDSYAAHAWLLSP-PCQPYTRQG 94


>gi|225681023|gb|EEH19307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 2092

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQP 78
            FS+EI+P+     Q NF   +IF D+ ++   D          +P D D+L+ GF C  
Sbjct: 155 LFSAEIDPFKQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVPADLDLLIVGFSCVD 214

Query: 79  FS 80
           FS
Sbjct: 215 FS 216


>gi|332217175|ref|XP_003257732.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Nomascus
          leucogenys]
          Length = 393

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +  T
Sbjct: 4  VRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
           +  D    D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSCDMILMSPPCQPFTRIG 86


>gi|296170222|ref|ZP_06851815.1| DNA (cytosine-5-)-methyltransferase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295895098|gb|EFG74816.1| DNA (cytosine-5-)-methyltransferase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 388

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAK 58
          K  + F GIG  R+ LE+       +  ++++  P     Y   F     +T   GDI K
Sbjct: 13 KAIEFFAGIGLARMGLEKA----GFQVTWANDYEPDKRAMYVGQFGESEGHTFALGDIGK 68

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +K  D+P D  +  A  PC   S AG
Sbjct: 69 VKAADLPTDAALAWASSPCTDLSLAG 94


>gi|188575624|ref|YP_001912553.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
          oryzae PXO99A]
 gi|188520076|gb|ACD58021.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
          oryzae PXO99A]
          Length = 395

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIP 65
          +F G GG    L +          +++EI+P   +TY AN P T +   DI K+  + I 
Sbjct: 1  MFAGAGG----LSEGLREAGFTSLYANEISPRYAQTYAANHPATQVDSRDIRKVDARKIR 56

Query: 66 --------DHDVLLAGFPCQPFS 80
                  + D++  G PCQ FS
Sbjct: 57 NLLGLKRGELDLIAGGPPCQGFS 79


>gi|323969240|gb|EGB64542.1| DNA adenine methylase [Escherichia coli TA007]
          Length = 754

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVGGTPCQAFSIAG 85


>gi|323949009|gb|EGB44903.1| DNA adenine methylase [Escherichia coli H252]
          Length = 762

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 34 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVGGTPCQAFSIAG 88


>gi|312964273|ref|ZP_07778577.1| DNA adenine methylase family protein [Escherichia coli 2362-75]
 gi|312290986|gb|EFR18860.1| DNA adenine methylase family protein [Escherichia coli 2362-75]
          Length = 672

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVGGTPCQAFSIAG 85


>gi|331646824|ref|ZP_08347925.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331044366|gb|EGI16495.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 862

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVGGTPCQAFSIAG 85


>gi|296242618|ref|YP_003650105.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
 gi|296095202|gb|ADG91153.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
          Length = 461

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 17/88 (19%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PN-------TLIFG 54
          LF G GG  LDL    + R  E   +++I  + VKTY  NF     P         +I G
Sbjct: 4  LFSGAGG--LDLGFVMSGR-FEILAANDIEEHMVKTYSINFGARIIPRLQPRLYPQVILG 60

Query: 55 DIAKIKTQDIPDH--DVLLAGFPCQPFS 80
          D++K+    + D   +V++ G PCQ FS
Sbjct: 61 DVSKVDFSLLKDEGINVVVGGPPCQDFS 88


>gi|218188646|gb|EEC71073.1| hypothetical protein OsI_02832 [Oryza sativa Indica Group]
          Length = 353

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          K+ + + GIGG+R  L  +      VE F   +IN  +   Y+ NF +    G+I  +  
Sbjct: 8  KVLEFYSGIGGMRYSLAASGARAEVVEAF---DINDVANDVYELNFGHRPYQGNIQTLTA 64

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +     L   PCQP+++ G
Sbjct: 65 SDLDKYKAQAWLLSPPCQPYTRQG 88


>gi|323186482|gb|EFZ71828.1| DNA adenine methylase family protein [Escherichia coli 1357]
          Length = 754

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAQKVLAGEIESPDVLVGGTPCQAFSIAG 85


>gi|228950066|ref|ZP_04112251.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228809593|gb|EEM56029.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 445

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          ++  +F G GG    L+  F+  +     + E++P +  TY+ N P T ++  DI  +K 
Sbjct: 14 EVIGIFAGCGG----LDTGFSKSDFNVQLAIELDPDACNTYKKNHPETEVWNRDIKTVKG 69

Query: 62 QDIPDHD-----VLLAGFPCQPFS 80
           +I         +LL G PCQ FS
Sbjct: 70 DEIRKLVGNKPLILLGGSPCQSFS 93


>gi|328914001|gb|AEB65597.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 600

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 23/99 (23%)

Query: 3   KITDLFCGIGGIRLDLEQT--FNHRNVECFFSSEINPYSVKTYQANF---------PNTL 51
           K+ DLF G GG+    EQT  F     E   + EIN  +++TY  N          P+  
Sbjct: 12  KLVDLFAGAGGLSKGFEQTGCF-----ETIGAVEINQAAIETYVYNHGGNRDIIIRPDES 66

Query: 52  IFGDIAKI------KTQDI-PDHDVLLAGFPCQPFSQAG 83
              DI+KI      K+++I P+   ++ G PCQ FS A 
Sbjct: 67  DTSDISKIDFRKWKKSKNIDPNLLTIIGGPPCQGFSNAN 105


>gi|323485262|ref|ZP_08090612.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14163]
 gi|323401440|gb|EGA93788.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14163]
          Length = 335

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSS----EINPYSVKTYQANFPNTLIFGDIA 57
          L+I +LF GIG  R+ L      RN+     S    EI+  +V++Y A F     +    
Sbjct: 7  LQILELFGGIGSPRVAL------RNIGVSVKSIDYVEIDEKAVRSYNAMFEQESAYSPQT 60

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +     PD  +L+ G PCQ FS AG
Sbjct: 61 VVGWNLQPD--ILIHGSPCQDFSIAG 84


>gi|308175642|ref|YP_003922347.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307608506|emb|CBI44877.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|328555623|gb|AEB26115.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens
           TA208]
          Length = 597

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 23/99 (23%)

Query: 3   KITDLFCGIGGIRLDLEQT--FNHRNVECFFSSEINPYSVKTYQANF---------PNTL 51
           K+ DLF G GG+    EQT  F     E   + EIN  +++TY  N          P+  
Sbjct: 9   KLVDLFAGAGGLSKGFEQTGCF-----ETIGAVEINQAAIETYVYNHGGNRDIIIRPDES 63

Query: 52  IFGDIAKI------KTQDI-PDHDVLLAGFPCQPFSQAG 83
              DI+KI      K+++I P+   ++ G PCQ FS A 
Sbjct: 64  DTSDISKIDFRKWKKSKNIDPNLLTIIGGPPCQGFSNAN 102


>gi|302876780|ref|YP_003845413.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687461|ref|ZP_07629907.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579637|gb|ADL53649.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 578

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 30 FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++SEI P+ V+      P     GDI  +    +   D++  G PCQ  S AG
Sbjct: 29 LWASEIEPFPVRVTTKRLPQVEHLGDITTLNGSTLAPVDIITFGSPCQDMSVAG 82


>gi|325286536|ref|YP_004262326.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321990|gb|ADY29455.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           L   DLFCG GG+    E   F       +F       +  TY+ NF +  I GDI +  
Sbjct: 96  LTSADLFCGAGGMAKGFEMAGFTQVGGLDWFKE-----AGMTYRENFEHPHILGDITERS 150

Query: 61  TQDI-----------PDHDVLLAGFPCQPFSQAG 83
            +D                VL  GFPCQ FS +G
Sbjct: 151 VKDKFINTVKSSLNGKPLTVLSGGFPCQGFSMSG 184


>gi|229143653|ref|ZP_04272076.1| DNA-cytosine methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228639832|gb|EEK96239.1| DNA-cytosine methyltransferase [Bacillus cereus BDRD-ST24]
          Length = 538

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIF-GDIAK 58
          +K+ DLFCG GG      + F     E   + +I   ++ T+  N  N   + F GDI +
Sbjct: 1  MKVIDLFCGAGG----FSEGFERAGFEIVRAYDIWAPAILTHNQNHGNGKQIAFKGDIYE 56

Query: 59 IKTQD-------IPDHDVLLAGFPCQPFSQA 82
          I   D       IPD +V++   PC  FS +
Sbjct: 57 ISMLDNEEFEKWIPDTEVIIGSPPCIAFSNS 87


>gi|326483421|gb|EGE07431.1| C-5 cytosine methyltransferase DmtA [Trichophyton equinum CBS
           127.97]
          Length = 584

 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ +    ++ +Y+ANFP+ L    ++A+  T  +
Sbjct: 282 DGFCGAGGVSRGAQQA----GLKLLWAFDKWESAINSYRANFPSCLAEHSEVAQFLTS-L 336

Query: 65  PDH---DVLLAGFPCQPFSQA 82
           P     DV+    PCQPFS A
Sbjct: 337 PREILVDVMHVSPPCQPFSPA 357


>gi|188526860|ref|YP_001909547.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori Shi470]
 gi|188143100|gb|ACD47517.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori Shi470]
          Length = 355

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AKI 59
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N + I GDI  A+I
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNAMGICGDITQAEI 60

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
          K + I      + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|222618843|gb|EEE54975.1| hypothetical protein OsJ_02581 [Oryza sativa Japonica Group]
          Length = 353

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          K+ + + GIGG+R  L  +      VE F   +IN  +   Y+ NF +    G+I  +  
Sbjct: 8  KVLEFYSGIGGMRYSLAASGARAEVVEAF---DINDVANDVYELNFGHRPYQGNIQTLTA 64

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           D+  +     L   PCQP+++ G
Sbjct: 65 SDLDKYKAQAWLLSPPCQPYTRQG 88


>gi|167851523|ref|ZP_02477031.1| DNA-cytosine methyltransferase [Burkholderia pseudomallei B7210]
          Length = 352

 Score = 37.7 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLFCG GG    L   F    V      +++P     Y+AN     +  DI+K+  
Sbjct: 9  ISCVDLFCGAGG----LTHGFILEGVPVVAGIDMDPACRFPYEANNQARFVERDISKVTM 64

Query: 62 QDI------PDHDVLLAGFPCQPFS 80
           ++       D  VL    PCQPFS
Sbjct: 65 AELNALFGDADLTVLAGCAPCQPFS 89


>gi|317506898|ref|ZP_07964670.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254826|gb|EFV14124.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 331

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          L + ++  G GG    LE   F H       + EI+  +  T Q N P+  +  GD+ ++
Sbjct: 7  LSVLEICAGAGGQSSGLEMAGFGHA-----LAVEIDKDAAATLQLNRPSWDVHEGDVREV 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++    D+L  G PC PFS AG
Sbjct: 62 NGREYKGVDLLAGGVPCPPFSIAG 85


>gi|160934346|ref|ZP_02081733.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
 gi|156867019|gb|EDO60391.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
          Length = 433

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           +LF G GG+ L +E+       +     E +  +  T + N PN  +I  DIA I   D+
Sbjct: 105 ELFAGAGGLALGIEEA----GFDTIGLIEFDKAASDTLKCNRPNWRVINDDIANISCLDL 160

Query: 65  PDH--------DVLLAGFPCQPFSQAG 83
            ++        D+L  G PCQ FS AG
Sbjct: 161 EEYFNIKKGELDLLSGGAPCQAFSYAG 187


>gi|324516189|gb|ADY46452.1| tRNA (cytosine-5-)-methyltransferase [Ascaris suum]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  +LF GIGG    L+++      E   + +IN  +   Y+ NFP T +     +  T
Sbjct: 12 LRCLELFSGIGGFHYALKESGT--RFEMLAAFDINDVANAIYKHNFPCTTVHQCNIQALT 69

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
           +  D    D+     PCQPF++ G
Sbjct: 70 SEFYDRQCADLWTMSPPCQPFTKKG 94


>gi|254460591|ref|ZP_05074007.1| C-5 cytosine-specific DNA methylase [Rhodobacterales bacterium
          HTCC2083]
 gi|206677180|gb|EDZ41667.1| C-5 cytosine-specific DNA methylase [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 384

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K  + F G G +   L   +     +C  +++I+P   +TY+ N+    L+ GD+A++  
Sbjct: 10 KFAEFFSGGGMVHAALGAQW-----DCVLANDIDPMKCETYRQNWGGAHLLEGDVAELPE 64

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
            +    D++ A  PCQ FS AG
Sbjct: 65 GTLHQPLDLIWASSPCQDFSLAG 87


>gi|116871711|ref|YP_848492.1| cytosine methyl transferase [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116740589|emb|CAK19709.1| cytosine methyl transferase [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 351

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI  I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKDIS 57

Query: 61 TQDIP-------DHDVLLAGFPCQPFS 80
            +I        D  +L+   PCQPFS
Sbjct: 58 DNEISALYPENTDIRLLMGCAPCQPFS 84


>gi|332655271|ref|ZP_08421011.1| putative type II DNA modification methyltransferase
          [Ruminococcaceae bacterium D16]
 gi|332515776|gb|EGJ45386.1| putative type II DNA modification methyltransferase
          [Ruminococcaceae bacterium D16]
          Length = 298

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C    E   +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQC----EWAAFPAAVLASHWPEVPRFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|330989663|gb|EGH87766.1| cytosine-specific methyltransferase [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 512

 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----QDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K+        I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALALAGKIKAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|330958885|gb|EGH59145.1| cytosine-specific DNA methyltransferase [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 458

 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIEAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|331090172|ref|ZP_08339060.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330402118|gb|EGG81690.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 681

 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++SEI P+ ++      P    +GD++++    I   D++  G PCQ  S AG
Sbjct: 31 WASEIEPFPIRVTTKRLPFMKHYGDVSRMDGGKIEPVDIITFGSPCQDMSIAG 83


>gi|313669224|ref|YP_004049508.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|313006686|emb|CBN88152.1| putative DNA modification methylase [Neisseria lactamica 020-06]
          Length = 330

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  EQ       E   + E    ++  Y+ NF + +   D+   +T
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDKAIDIYRKNFNHPVYETDLTDEQT 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I ++  D+++ G PCQ FS AG
Sbjct: 57 AISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|294637303|ref|ZP_06715601.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC
          23685]
 gi|291089511|gb|EFE22072.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC
          23685]
          Length = 722

 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKI----KTQDIPDHDVLLAGFPCQPFSQAG 83
          +EI  +        +P+ +  GD+ KI    +  D+   DVL+ G PCQ FS AG
Sbjct: 28 AEIEEFPSAVLAQRWPSVVNLGDMTKIAAAVRAGDVEAPDVLVGGTPCQAFSVAG 82


>gi|315506801|ref|YP_004085688.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
 gi|315413420|gb|ADU11537.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
          Length = 412

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           ++ ++  G GG  L LE+  F H       + E++  + KT + N P+  I  GD+A  
Sbjct: 4  FEVIEICAGAGGQALGLEKAGFEHA-----LAVELDSNACKTLEENRPSWKIAQGDVADE 58

Query: 60 KTQDIPDH---DVLLAGFPCQPFSQAG 83
          +     DH    +L  G PC PFS AG
Sbjct: 59 EVWRPADHQGVSLLAGGVPCPPFSIAG 85


>gi|309378924|emb|CBX22511.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 330

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  EQ       E   + E    ++  Y+ NF + +   D+   +T
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDKAIDIYRKNFNHPVYETDLTDEQT 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I ++  D+++ G PCQ FS AG
Sbjct: 57 AISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|261401478|ref|ZP_05987603.1| modification methylase HindV [Neisseria lactamica ATCC 23970]
 gi|269208450|gb|EEZ74905.1| modification methylase HindV [Neisseria lactamica ATCC 23970]
          Length = 330

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  EQ       E   + E    ++  Y+ NF + +   D+   +T
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDKAIDIYRKNFNHPVYETDLTDEQT 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I ++  D+++ G PCQ FS AG
Sbjct: 57 AISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|72080942|ref|YP_288000.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 393

 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 19/92 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIF--GDI--A 57
           DLF G GG+   L             S +I   +V+TY  NF     N  +F  GDI  +
Sbjct: 73  DLFSGAGGLSCGLVMA----GFLPLASLKIMKQAVETYAYNFKKRSKNKELFKLGDIRDS 128

Query: 58  KIKTQDIPDH------DVLLAGFPCQPFSQAG 83
           KIK++   DH      D++  GFPCQ FS AG
Sbjct: 129 KIKSE-FYDHFKDQELDLIAGGFPCQGFSMAG 159


>gi|172039658|ref|YP_001806159.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
 gi|171701112|gb|ACB54093.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
          Length = 321

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          +K+ DLF G GG+ L     F +       + +     VK YQ NF + +   D+++   
Sbjct: 3  MKVIDLFAGCGGLSLG----FQNAGYTILAAYDNWEPVVKIYQKNFKHPIYKWDLSRYEL 58

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++     + D+++ G PCQ FS AG
Sbjct: 59 YLEEFKSLNPDLIMGGPPCQDFSSAG 84


>gi|21242948|ref|NP_642530.1| cytosine-specific DNA methyltransferase [Xanthomonas axonopodis
          pv. citri str. 306]
 gi|21108450|gb|AAM37066.1| cytosine-specific DNA methyltransferase [Xanthomonas axonopodis
          pv. citri str. 306]
          Length = 487

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQAG 83
          SE + ++       +P+    GD+ +    I+ + +P  D+L+ G PCQ FS AG
Sbjct: 38 SETDAFASAVLAHRYPHVPNLGDMTRLAQRIRDRSVPAPDILVGGTPCQSFSVAG 92


>gi|326469309|gb|EGD93318.1| hypothetical protein TESG_00865 [Trichophyton tonsurans CBS 112818]
          Length = 584

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           D FCG GG+    +Q      ++  ++ +    ++ +Y+ANFP+ L    ++A+  T  +
Sbjct: 282 DGFCGAGGVSRGAQQA----GLKLLWAFDKWESAINSYRANFPSCLAEHSEVAQFLTS-L 336

Query: 65  PDH---DVLLAGFPCQPFSQA 82
           P     DV+    PCQPFS A
Sbjct: 337 PREILVDVIHVSPPCQPFSPA 357


>gi|220924842|ref|YP_002500144.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219949449|gb|ACL59841.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 361

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLFCG GG+ L           +   S +I+     +Y+ N P   L   D+A +   
Sbjct: 5  VVDLFCGCGGLSLGARNA----GFKIGLSVDIDAVLTSSYKENHPGAHLRLMDVAALTGS 60

Query: 63 DIPD-----HDVLLAGFPCQPFSQAG 83
          D+        D ++ G PCQ FS+ G
Sbjct: 61 DVRTVVGGRVDGIIGGPPCQGFSEIG 86


>gi|163738696|ref|ZP_02146110.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741592|ref|ZP_02148983.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis
          2.10]
 gi|161385326|gb|EDQ09704.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis
          2.10]
 gi|161388024|gb|EDQ12379.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 324

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          ML   +L  G GG  L LE+  F+H  +      EI+ +   T + N P   ++  D+  
Sbjct: 1  MLTSVELCAGAGGQALGLEKAGFDHTAL-----VEIDKHCCATLRHNRPQWNVLEEDVRA 55

Query: 59 IKTQDIPDH--DVLLAGFPCQPFSQAG 83
           K +    H  D+L  G PC PFS AG
Sbjct: 56 FKEEADAYHGIDLLAGGLPCPPFSVAG 82


>gi|320040099|gb|EFW22033.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 2095

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-DVLLAGFPCQP 78
            FS+EI P+     Q NF   ++F D+ ++            + +P + D+L+AGF C  
Sbjct: 176 LFSAEIEPFKQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNLDLLVAGFSCVD 235

Query: 79  FSQ 81
           FSQ
Sbjct: 236 FSQ 238


>gi|308062920|gb|ADO04807.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          Sat464]
          Length = 355

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N + I GDI +I+ 
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNAIGICGDITQIEI 60

Query: 62 QD-------IPDHDVLLAGFPCQPFSQAG 83
          ++         + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|261393337|emb|CAX50970.1| putative type II restriction-modification system enzyme Mod
          [Neisseria meningitidis 8013]
          Length = 330

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  EQ       E   + E    ++  Y+ NF + +   D+   +T
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDKAIDIYRKNFNHPVYETDLTDEQT 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I ++  D+++ G PCQ FS AG
Sbjct: 57 AISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|320009547|gb|ADW04397.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
          33331]
          Length = 431

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          L++ ++  G GG  L LE+  F H       + E++P + +T + N P   +  GD+A  
Sbjct: 4  LQVAEICAGAGGQALGLERAGFEHA-----VAVELDPTAAQTLKRNMPGCDVRTGDVADR 58

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D P+         D++  G PC PF+ AG
Sbjct: 59 SIWD-PEQFCAEHGTPDLIAGGVPCPPFTIAG 89


>gi|303312199|ref|XP_003066111.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105773|gb|EER23966.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 2149

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-DVLLAGFPCQP 78
            FS+EI P+     Q NF   ++F D+ ++            + +P + D+L+AGF C  
Sbjct: 176 LFSAEIEPFKQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNLDLLVAGFSCVD 235

Query: 79  FSQ 81
           FSQ
Sbjct: 236 FSQ 238


>gi|163855609|ref|YP_001629907.1| putative C-5 cytosine-specific DNA methylase [Bordetella petrii
          DSM 12804]
 gi|163259337|emb|CAP41637.1| putative C-5 cytosine-specific DNA methylase [Bordetella petrii]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
          SEI+P+       ++P+    GD+  I  Q +    P  D+L+ G PCQ FS AG
Sbjct: 33 SEIDPFPNAVLAHHYPDVPNLGDMTGIADQILAGTAPAPDILVGGTPCQAFSVAG 87


>gi|119193294|ref|XP_001247253.1| hypothetical protein CIMG_01024 [Coccidioides immitis RS]
          Length = 2097

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-DVLLAGFPCQP 78
            FS+EI P+     Q NF   ++F D+ ++            + +P + D+L+AGF C  
Sbjct: 210 LFSAEIEPFKQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNPDLLVAGFSCVD 269

Query: 79  FSQ 81
           FSQ
Sbjct: 270 FSQ 272


>gi|288929280|ref|ZP_06423125.1| modification methylase HphIA (Cytosine-specific methyltransferase
          HphIA) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329382|gb|EFC67968.1| modification methylase HphIA (Cytosine-specific methyltransferase
          HphIA) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 370

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          + DLF G GG  +  E+   H       + EI+     TY  N  N L+   DI  +  +
Sbjct: 6  VIDLFAGCGGFSIGFEKAGFH----VTKAVEIDKQIAHTYSMNHANVLMLNDDIGSVDNE 61

Query: 63 ---DIPDHDVLLAGFPCQPFSQAG 83
                + +V++ G PCQ FS AG
Sbjct: 62 YNFTRGEAEVIVGGPPCQGFSMAG 85


>gi|218884576|ref|YP_002428958.1| Cytosine-specific DNA methylase [Desulfurococcus kamchatkensis
          1221n]
 gi|218766192|gb|ACL11591.1| Cytosine-specific DNA methylase [Desulfurococcus kamchatkensis
          1221n]
          Length = 324

 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  D+F G GG  L    T   +++         P ++ TY+ NFP+ L+  +  K   +
Sbjct: 6  KYIDVFSGAGGFSLGFHLTGRFKSLLAI--DNFKPAAL-TYKTNFPHALVVNEDVKELDK 62

Query: 63 DI------PDH-DVLLAGFPCQPFSQA 82
          ++      PD  DV++   PC+PF+ A
Sbjct: 63 ELLTGIVKPDEIDVIIGSPPCEPFTGA 89


>gi|167646223|ref|YP_001683886.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167348653|gb|ABZ71388.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 387

 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M    + F G G  R  L   +      C F+++ +     TYQ N+     L  GD+ +
Sbjct: 1  MPSFYEFFAGGGMARAGLGDEWT-----CLFANDFDAKKGMTYQRNWGADGELHIGDVKQ 55

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +KT+ +  + D++   FPCQ  S AG
Sbjct: 56 VKTKQLRGEPDLVWGSFPCQDLSLAG 81


>gi|309776146|ref|ZP_07671137.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916097|gb|EFP61846.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 456

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 17  DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPC 76
           +++  F+ +N     + +  P  +K Y      +   G+I+ I   D+P+ D+L   FPC
Sbjct: 86  EMDVGFDFKNDRHTITEKTRPAILKKYYLANILSGNLGNISHIHAADLPEVDLLTYSFPC 145

Query: 77  QPFSQAG 83
           Q  S+AG
Sbjct: 146 QDLSKAG 152


>gi|293417389|ref|ZP_06660013.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|291430909|gb|EFF03905.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
          Length = 345

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG+   L+Q      ++     +I       Y++N     I  DI+ +  
Sbjct: 3  VKVVDLFCGAGGLTHGLKQA----GLDVVAGIDIESACRVAYESNNSALFIEKDISLVTK 58

Query: 62 QDIPDH------DVLLAGFPCQPFSQ 81
           ++ D        VL    PCQPFS+
Sbjct: 59 DELNDLFEGAQVRVLAGCAPCQPFSR 84


>gi|160945835|ref|ZP_02093061.1| hypothetical protein FAEPRAM212_03368 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443566|gb|EDP20571.1| hypothetical protein FAEPRAM212_03368 [Faecalibacterium
          prausnitzii M21/2]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C    E   +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQC----EWAAFPAAVLASHWPEVPRFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|33323568|gb|AAQ07538.1|AF503408_62 Dam [Enterobacteria phage P7]
          Length = 672

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K    ++  +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAQKVQAGEIEAPDVLVGGTPCQAFSIAG 85


>gi|302134308|ref|ZP_07260298.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          NCPPB 1108]
          Length = 584

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIDAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|302058959|ref|ZP_07250500.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
          Length = 498

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIDAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|213967437|ref|ZP_03395585.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|213927738|gb|EEB61285.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 498

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIDAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|266622011|ref|ZP_06114946.1| site-specific DNA-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288866294|gb|EFC98592.1| site-specific DNA-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C    E   Y     + ++P    F DI  +  +   +
Sbjct: 9  LFTGIGGIDLAAEAAGFTTVCQC----EWADYPTAVLEKHWPLVPRFRDITTVTKEAFIE 64

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  +L  GFPCQPFS  G
Sbjct: 65 KTGRKEITLLSGGFPCQPFSSVG 87


>gi|313886989|ref|ZP_07820689.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312923515|gb|EFR34324.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 349

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L+       +E     +++      Y+ N     I+ DI  +   +
Sbjct: 5  VVDLFCGIGGLSYGLKTA----GLEVLAGYDLDQTCAFAYEKNNNAQFIYKDIRSVCGGE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSSLLDGVDIKVLAGCAPCQPFS 83


>gi|319939117|ref|ZP_08013481.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
 gi|319812167|gb|EFW08433.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
          Length = 434

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 41  KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +TY+ NFP  +I       K    P++++ + GFPC  FS+AG
Sbjct: 126 ETYKKNFPPNIIQHQKDIRKVAHFPNNELTVGGFPCPGFSEAG 168


>gi|194303019|ref|YP_002014288.1| gp72 [Mycobacterium phage Boomer]
 gi|194153067|gb|ACF34134.1| gp72 [Mycobacterium phage Boomer]
          Length = 475

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ML + D+FCG GG      Q      +E   ++     +V+T+ AN P T  I  D+++I
Sbjct: 1  MLTLLDMFCGAGGSSTGAVQV---PGIEVRVAANHWKLAVETHGANHPTTDHICADLSQI 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +  P+ D+L A   C   S A
Sbjct: 58 DPRLFPNTDILWASPSCTKHSIA 80


>gi|170063953|ref|XP_001867327.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus]
 gi|167881402|gb|EDS44785.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus]
          Length = 345

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ +LF GIGG+   + +    +      + EINP +   Y  NF P      +I  +  
Sbjct: 17 RVLELFSGIGGMHYAIRRA--GKPFRVVAAMEINPVANTIYNHNFGPGAATNSNILSLTP 74

Query: 62 QDIPD--HDVLLAGFPCQPFSQAG 83
          + I     +V+L   PCQPF++ G
Sbjct: 75 ERIDQLGANVILMSPPCQPFTRNG 98


>gi|145592040|ref|YP_001154042.1| DNA-cytosine methyltransferase [Pyrobaculum arsenaticum DSM
          13514]
 gi|145283808|gb|ABP51390.1| DNA-cytosine methyltransferase [Pyrobaculum arsenaticum DSM
          13514]
          Length = 318

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 34 EINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPDH---DVLLAGFPCQPFSQA 82
          +++  +V+TY AN  NT++   DI ++  +D+  +   DVL+   PC+PF+ A
Sbjct: 30 DVDRDAVRTYSANHVNTVVLQRDIREVSYEDLVKYGEADVLIGSPPCEPFTSA 82


>gi|109522148|ref|YP_655825.1| gp64 [Mycobacterium phage PMC]
 gi|91980848|gb|ABE67565.1| gp64 [Mycobacterium phage PMC]
          Length = 475

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ML + D+FCG GG      Q      +E   ++     +V+T+ AN P T  I  D+++I
Sbjct: 1  MLTLLDMFCGAGGSSTGAVQV---PGIEVRVAANHWKLAVETHGANHPTTDHICADLSQI 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +  P+ D+L A   C   S A
Sbjct: 58 DPRLFPNTDILWASPSCTKHSIA 80


>gi|325093103|gb|EGC46413.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 2239

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 20  QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-D 68
           Q FN R++   FS+EI+P+     Q NF   +IF D+ ++            + +P   D
Sbjct: 209 QKFNMRHL---FSAEIDPFKQSYIQRNFSPDIIFRDVNELIADEAVTAFGSLRKVPSTLD 265

Query: 69  VLLAGFPCQPFS 80
           +L+ GF C  FS
Sbjct: 266 LLVVGFSCVDFS 277


>gi|260796005|ref|XP_002592995.1| hypothetical protein BRAFLDRAFT_275730 [Branchiostoma floridae]
 gi|229278219|gb|EEN49006.1| hypothetical protein BRAFLDRAFT_275730 [Branchiostoma floridae]
          Length = 386

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ + + G+GG+   + ++     V    + +IN  +   Y+ NFP+  L+  DI  IK
Sbjct: 11 LRVVEFYSGVGGMHYAVLESKVPATVVA--ALDINTTANAVYRHNFPHVNLLQRDITGIK 68

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
            +    + DV +   PCQPF++ G
Sbjct: 69 LPEFQSWNADVFMMSPPCQPFTRVG 93


>gi|302551692|ref|ZP_07304034.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
          40736]
 gi|302469310|gb|EFL32403.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
          40736]
          Length = 415

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-- 58
          +   ++  G GG  L LE   F+H       + E++  +V T +AN    ++ GD+A   
Sbjct: 1  MSAVEICAGAGGQSLGLELAGFDHA-----VAVELDENAVNTLRANRDWRVVHGDVADED 55

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            K     D D+L  G PC PFS AG
Sbjct: 56 LWKPGKYIDIDLLAGGVPCPPFSIAG 81


>gi|257440558|ref|ZP_05616313.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
 gi|257196997|gb|EEU95281.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
          Length = 297

 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C +++    +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQCEWAA----FPAAVLASHWPEVPRFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|54020626|ref|YP_116141.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           232]
 gi|53987799|gb|AAV28000.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 416

 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIF--GDI--A 57
           DLF G GG+   L             S EI   + +TY  NF     N  +F  GDI  +
Sbjct: 96  DLFSGAGGLSCGLVMA----GFLPLASLEIMKQAFETYAYNFKKRSKNKELFKLGDIRDS 151

Query: 58  KIKTQDIPDH------DVLLAGFPCQPFSQAG 83
           KIK++   DH      D++  GFPCQ FS AG
Sbjct: 152 KIKSE-FYDHFKDQELDLIAGGFPCQGFSMAG 182


>gi|228473386|ref|ZP_04058140.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
          gingivalis ATCC 33624]
 gi|228275288|gb|EEK14086.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
          gingivalis ATCC 33624]
          Length = 358

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ML   D+F G GG+ L  E       ++  +  EINP + K++  N     +  GDI  I
Sbjct: 1  MLYGIDIFSGAGGLSLGAEMA----GIQICYGIEINPSAAKSFTRNHKGAKVLQGDIKDI 56

Query: 60 KTQDIPDHD----VLLAGFPCQPFS 80
              + +      +++ G PCQ FS
Sbjct: 57 DPSKLKEGIDPVFIIMGGPPCQGFS 81


>gi|295104078|emb|CBL01622.1| Site-specific DNA methylase [Faecalibacterium prausnitzii SL3/3]
          Length = 298

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C +++    +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQCEWAA----FPAAVLASHWPEVPRFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|168697993|ref|ZP_02730270.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 489

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          F SEI+ +       ++P+T   GD   I        D+L+ G PCQ FS AG
Sbjct: 26 FFSEIDNFPRAVLAHHYPHTPCHGDFTTIGKDTYDPIDLLVGGTPCQSFSVAG 78


>gi|134287405|ref|YP_001110788.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
          phiC2]
 gi|93117243|gb|ABE99533.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
          phiC2]
          Length = 316

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI +I+T++IP  DV   GFPCQ  S AG
Sbjct: 37 DIREIRTENIPRADVWCFGFPCQDISVAG 65


>gi|17225517|gb|AAL37447.1|AF328915_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N T I GDI +I+ 
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNATGICGDITQIEI 60

Query: 62 QD-------IPDHDVLLAGFPCQPFSQAG 83
          ++         + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|326573696|gb|EGE23654.1| DNA-cytosine methyltransferase [Moraxella catarrhalis O35E]
          Length = 408

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
           +++  +F GIG I   L++   NH  V   F+++I+ +  K+Y AN+         DI  
Sbjct: 34  IRLATVFSGIGAIEQALKRLNLNHSIV---FANDIDNFVKKSYLANYELDEKNWHSDITT 90

Query: 59  IKTQDIPDH-DVLLAGFPCQPFSQAG 83
                  +  D+L+ G PCQ FS  G
Sbjct: 91  FDATPYKNQVDILVGGSPCQAFSMVG 116


>gi|240275730|gb|EER39243.1| DNA repair protein RAD8 [Ajellomyces capsulatus H143]
          Length = 1838

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 20  QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPDH-D 68
           Q FN R++   FS+EI+P+     Q NF   +IF D+ ++            + +P   D
Sbjct: 148 QKFNMRHL---FSAEIDPFKQSYIQRNFSPDIIFRDVNELIADEAVTAFGSLRKVPSTLD 204

Query: 69  VLLAGFPCQPFS 80
           +L+ GF C  FS
Sbjct: 205 LLVVGFSCVDFS 216


>gi|108562472|ref|YP_626788.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          HPAG1]
 gi|107836245|gb|ABF84114.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          HPAG1]
          Length = 355

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE+       +     + +  ++ T++ N  N + + GDI +   
Sbjct: 4  KILDLFCGAGGFSAGLERL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK     + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|238059022|ref|ZP_04603734.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237886458|gb|EEP75286.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 442

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 16/85 (18%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG    L Q F     E   +S+I+P +  T+  NFP    I GD   I+  ++
Sbjct: 3  DLFAGAGG----LSQGFQQAGFEIAGASDIDPDACATFALNFPGAQAICGD---IRRPEL 55

Query: 65 PDHDVLLAGF--------PCQPFSQ 81
           +H + +           PCQ FSQ
Sbjct: 56 HEHIIEVGRGVDVVVGGPPCQAFSQ 80


>gi|160943738|ref|ZP_02090969.1| hypothetical protein FAEPRAM212_01233 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444912|gb|EDP21915.1| hypothetical protein FAEPRAM212_01233 [Faecalibacterium
          prausnitzii M21/2]
          Length = 298

 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C +++    +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQCEWAA----FPAAVLASHWPEVPHFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|46200907|ref|ZP_00207896.1| COG0270: Site-specific DNA methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 561

 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 31  FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           F +EI P+       ++P+    GD+  I  Q      DVL+ G PCQ FS AG
Sbjct: 50  FFAEIEPFPSAVLAHHYPHVPNLGDMTAIDGQAWRGKIDVLVGGTPCQAFSVAG 103


>gi|316970903|gb|EFV54759.1| putative PWWP domain protein [Trichinella spiralis]
          Length = 613

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
           +++  LF GI   ++ L++     N+E ++S EI+  ++   + N  N +++ GD+  I 
Sbjct: 326 IRVLSLFDGIATGKIALDEL--GINIEIYYSCEIDQEALLVTKVNHENQIVYLGDVRGIT 383

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
             K ++I   D+L+ G PC   S A
Sbjct: 384 REKLEEISPIDLLIGGSPCNDVSIA 408


>gi|332970699|gb|EGK09680.1| modification methylase HphIA [Kingella kingae ATCC 23330]
          Length = 149

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ 62
          + DLFCG GG+ L     F     +     +    ++KTY A   NT  I  D+     +
Sbjct: 7  VLDLFCGCGGLSLG----FIQAGFDVKLGIDAWQDAIKTYTATHQNTQGIVADLFTTTPE 62

Query: 63 DIPDH------DVLLAGFPCQPFSQAG 83
           I         DV++ G PCQ FS AG
Sbjct: 63 QISQQTQINQIDVIIGGPPCQGFSIAG 89


>gi|300957407|ref|ZP_07169621.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300315842|gb|EFJ65626.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 343

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLFCG GG+   L+Q+     ++     +I       ++ N     I  DI  +K 
Sbjct: 3  IKAVDLFCGAGGLTHGLKQS----GIDVVAGYDIEETCRFAFEFNNNAVFINQDITVLKG 58

Query: 62 QDIPDH----DV-LLAG-FPCQPFSQAG 83
          + I  H    DV +LAG  PCQPFS  G
Sbjct: 59 EQILSHFKDSDVTILAGCAPCQPFSTYG 86


>gi|257440380|ref|ZP_05616135.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
 gi|257197226|gb|EEU95510.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
          Length = 298

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C    E   +      +++P    F DI  +  +   +
Sbjct: 8  LFSGIGGIDLAAEAAGFTSVCQC----EWAAFPAAVLASHWPEVPRFQDITTVTKEAFFE 63

Query: 67 HD------VLLAGFPCQPFSQAG 83
                  ++  GFPCQPFS AG
Sbjct: 64 KTGLRTVTLISGGFPCQPFSTAG 86


>gi|170079525|ref|YP_001736159.1| cytosine-specific methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887194|gb|ACB00904.1| Cytosine-specific methyltransferase [Synechococcus sp. PCC 7002]
          Length = 270

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE----CFFSSEINPYSV----KTYQANFPNTLI 52
          ML+  +LF GIGG    + + F  + +E    C    +   ++V      Y   FP   I
Sbjct: 1  MLRHCELFGGIGGFSHAVAKYFP-KTIETTTYCDIDEQARSFAVPGGSAVYSEFFPKVTI 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            DI     Q   + D++  GFPC   SQAG
Sbjct: 60 HKDIRTYYPQQ-KEFDLITCGFPCTGTSQAG 89


>gi|70731152|ref|YP_260893.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68345451|gb|AAY93057.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 551

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+       ++P     GD+ K+  Q     I   D+L+ G PCQ FS AG
Sbjct: 30 AEIEPFPSTVLAHHYPEIPNHGDMTKLGAQVLAGKIAAPDILVGGTPCQAFSVAG 84


>gi|257386518|ref|YP_003176291.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM
          12286]
 gi|257168825|gb|ACV46584.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM
          12286]
          Length = 452

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLFCG GG    L Q  +    E  +  +    +  TY+AN    +  GDI + + 
Sbjct: 6  LTAIDLFCGAGG----LSQGLHDAGFETLWGIDHEENTKPTYEANHDCEMTVGDIREEEP 61

Query: 62 QDI----PDHDVLLAGFPCQPFSQAG 83
           D+     + D++  G PC  FS  G
Sbjct: 62 PDLGLEEGELDLVAGGPPCPTFSLVG 87


>gi|168467807|ref|ZP_02701644.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
          SL317]
 gi|195629099|gb|EDX48473.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
          SL317]
          Length = 819

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKT----QDIPDHDVLLAGFPCQPFSQAG 83
          SEI P+        +P     GD+ KI       ++   D+L+ G PCQ FS AG
Sbjct: 31 SEIEPFPCAVLAERWPEVPNLGDMTKIAASIAANEVAAPDLLVGGTPCQAFSIAG 85


>gi|114629604|ref|XP_001151712.1| PREDICTED: DNA methyltransferase 2 isoform 2 [Pan troglodytes]
 gi|119606625|gb|EAW86219.1| hCG23994, isoform CRA_c [Homo sapiens]
 gi|167887562|gb|ACA05986.1| tRNA aspartic acid methyltransferase 1 variant 1 [Homo sapiens]
          Length = 345

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQ 81
          ++  D    D++L   PCQPF++
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTR 84


>gi|296114006|ref|YP_003627944.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
 gi|295921700|gb|ADG62051.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
          Length = 410

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
           +++  +F GIG I   L++   NH  V   F+++I+ +  K+Y AN+         DI  
Sbjct: 36  IRLATVFSGIGAIEQALKRLNLNHSIV---FANDIDNFVKKSYLANYELDEKNWHSDITT 92

Query: 59  IKTQDIPDH-DVLLAGFPCQPFSQAG 83
                  +  DVL+ G PCQ FS  G
Sbjct: 93  FDATPYKNQVDVLVGGSPCQAFSMVG 118


>gi|304383753|ref|ZP_07366212.1| modification methylase HgiDII [Prevotella marshii DSM 16973]
 gi|304335277|gb|EFM01548.1| modification methylase HgiDII [Prevotella marshii DSM 16973]
          Length = 360

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   ++     +        +I+      Y+ N     I+ DI  +  
Sbjct: 14 IEVIDLFCGIGGLSFGMKS----KGFNILAGYDIDATCRYAYETNNNAKFIYKDIKTVSP 69

Query: 62 QDIPDH------DVLLAGFPCQPFS 80
           +I          VL    PCQPFS
Sbjct: 70 DEIRTAYGKGSIRVLAGCAPCQPFS 94


>gi|144575557|gb|AAZ53977.2| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 339

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 19/92 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIF--GDI--A 57
           DLF G GG+   L             S +I   +V+TY  NF     N  +F  GDI  +
Sbjct: 19  DLFSGAGGLSCGLVMA----GFLPLASLKIMKQAVETYAYNFKKRSKNKELFKLGDIRDS 74

Query: 58  KIKTQDIPDH------DVLLAGFPCQPFSQAG 83
           KIK++   DH      D++  GFPCQ FS AG
Sbjct: 75  KIKSE-FYDHFKDQELDLIAGGFPCQGFSMAG 105


>gi|254467362|ref|ZP_05080773.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206688270|gb|EDZ48752.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 319

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          ML   +L  G GG  L LE   F+H  +      EI+ +   T + N P   ++  D+ K
Sbjct: 1  MLTSVELCAGAGGQALGLEAAGFDHTAL-----VEIDKHCCATLRHNRPAWNVLEEDVRK 55

Query: 59 IK--TQDIPDHDVLLAGFPCQPFSQAG 83
           K    D    D+L  G PC PFS AG
Sbjct: 56 FKEVAGDYKGIDLLAGGLPCPPFSVAG 82


>gi|118431236|ref|NP_147563.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
 gi|116062559|dbj|BAA79854.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
          Length = 469

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 21/92 (22%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----------------PNT 50
          LF G GG+ L   Q+   R V   F++EI   +  TY  N                 P T
Sbjct: 9  LFSGAGGLDLGFVQSGRFRIV---FANEILLPAAVTYSRNLGLRLEVCGDEPRVEAQPGT 65

Query: 51 LIFGDIAKIKTQDIP--DHDVLLAGFPCQPFS 80
          ++  D+AK+    +   D DV++ G PCQ FS
Sbjct: 66 IMACDVAKLDFTGLSGVDADVIIGGPPCQDFS 97


>gi|332029105|gb|EGI69118.1| tRNA (cytosine-5-)-methyltransferase [Acromyrmex echinatior]
          Length = 309

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 34 EINPYSVKTYQANFPNTLIFG-DIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          +INP +   Y  NFP T++   +I  I  Q++   + D++    PCQPF++ G
Sbjct: 15 DINPVANDVYHHNFPETVLMNRNIQSINAQELNKLNVDIMFMSPPCQPFTRLG 67


>gi|325857409|ref|ZP_08172464.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
          18C-A]
 gi|325483119|gb|EGC86099.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
          18C-A]
          Length = 320

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--AKI 59
          +K+ DLFCG GG+ L  +Q       +   + +    +   Y+ NF + +   D+  A  
Sbjct: 1  MKVVDLFCGCGGLSLGFQQA----GFDIIAAYDNWEAATDVYRLNFSHPVHKADLMNAAR 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
           ++ I  +  ++++ G PCQ +S AG
Sbjct: 57 ASESIMQYSPEMIIGGPPCQDYSSAG 82


>gi|255081819|ref|XP_002508128.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226523404|gb|ACO69386.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 404

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
           L+  + +CG+GG+   L +      V   F  +INP     Y+ NF        I+G   
Sbjct: 31  LRAVEFYCGVGGLHYSLLRARPDAKVVAAF--DINPNGNDVYEHNFGVRPSQKNIYG--L 86

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + + D  D  + L   PCQPF++ G
Sbjct: 87  PVASFDRLDAGLWLLSPPCQPFTRQG 112


>gi|170719036|ref|YP_001784193.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827165|gb|ACA32536.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 365

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P     GD+     KI  ++I   DVL+ G PCQ FS AG
Sbjct: 28 AEIEPFPSALLAYRYPEIPNLGDMTALPEKILNREIKAPDVLVGGTPCQAFSVAG 82


>gi|242253856|ref|NP_001156357.1| tRNA (cytosine-5-)-methyltransferase [Sus scrofa]
 gi|226222432|gb|ACO38647.1| DNA methyltransferase 2 [Sus scrofa]
          Length = 408

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ GIGG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGVT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    +++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFNMVLMSPPCQPFTRIG 86


>gi|121594541|ref|YP_986437.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120606621|gb|ABM42361.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 366

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +   DLFCG GG    L   F    +      +++P     Y+AN     +  DI+K+  
Sbjct: 23  ISCVDLFCGAGG----LTHGFVLEGLPVVAGIDLDPACRFPYEANNQARFVERDISKVTA 78

Query: 62  QDIP----DHDV-LLAG-FPCQPFS 80
            ++     D D+ +LAG  PCQPFS
Sbjct: 79  SELKALFGDADLTILAGCAPCQPFS 103


>gi|298486609|ref|ZP_07004667.1| DNA methyltransferase [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|298158824|gb|EFH99886.1| DNA methyltransferase [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
          Length = 589

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +E+ P+       ++P T   GD+ K    +    I   DVL+ G PCQ FS A
Sbjct: 31 MEPVWFAEVEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIKAPDVLVGGTPCQAFSVA 90

Query: 83 G 83
          G
Sbjct: 91 G 91


>gi|167462714|ref|ZP_02327803.1| possible DNA (cytosine-5-)-methyltransferase [Paenibacillus
          larvae subsp. larvae BRL-230010]
 gi|322382689|ref|ZP_08056545.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153341|gb|EFX45773.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 260

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGGI L  +       +E     E   +  K  + ++PNT I+ D+  + T
Sbjct: 1  MKKLSLFSGIGGIDLAAKWA----GIETVAFCEKEHFPQKVLRRHWPNTPIYDDVCTL-T 55

Query: 62 QDIPDHDVLL----------AGFPCQPFSQAG 83
          +++ + D ++          AG+PCQ  S AG
Sbjct: 56 REVLERDGIIGTGRTIDLISAGYPCQGESYAG 87


>gi|114629602|ref|XP_001151777.1| PREDICTED: DNA methyltransferase 2 isoform 3 [Pan troglodytes]
 gi|119606624|gb|EAW86218.1| hCG23994, isoform CRA_b [Homo sapiens]
 gi|167887560|gb|ACA05984.1| tRNA aspartic acid methyltransferase 1 variant 2 [Homo sapiens]
          Length = 367

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L++ +L+ G+GG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPAQVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQ 81
          ++  D    D++L   PCQPF++
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTR 84


>gi|291544225|emb|CBL17334.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 407

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 15/88 (17%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           +LF G GG+ L +E+  FN   +      E++  +  T + N P   +I  DIA +   D
Sbjct: 78  ELFAGAGGLALGVEKAGFNTLGL-----VEVDKDASDTLRKNRPEWRVINDDIANVSCLD 132

Query: 64  IPDH--------DVLLAGFPCQPFSQAG 83
           + ++        D+L  G PCQ FS AG
Sbjct: 133 LQEYFGLKQGELDLLSGGAPCQSFSYAG 160


>gi|119716511|ref|YP_923476.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
 gi|119537172|gb|ABL81789.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
          Length = 399

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 23/96 (23%)

Query: 6   DLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANF----------------P 48
           +LF G GG+ + L E  F H        +E+N  +  T +AN                 P
Sbjct: 19  ELFSGGGGLAMALHEAGFRH-----LLLNELNKRACATLRANNAVDYLPDETPPATLADP 73

Query: 49  NTLIFGDIAKIK-TQDIPDHDVLLAGFPCQPFSQAG 83
             LI G I ++  T  + D DV+  G PCQPFS  G
Sbjct: 74  WPLIEGGIGEVDFTPFLGDVDVVAGGVPCQPFSLGG 109


>gi|113461565|ref|YP_719634.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
 gi|112823608|gb|ABI25697.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
          Length = 365

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIA----KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P     GD+     KI  ++I   DVL+ G PCQ FS AG
Sbjct: 28 AEIEPFPSALLAYRYPEIPNLGDMTALPEKILNREIKAPDVLVGGTPCQAFSVAG 82


>gi|332995746|gb|AEF05801.1| DNA-cytosine methyltransferase [Alteromonas sp. SN2]
          Length = 369

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 28 ECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFS 80
          +C F+++ +   V TY+ N+ N T++  DI  ++  D+    D++ A FPCQ  S
Sbjct: 11 KCLFANDFDYKKVNTYKKNWGNETIVQSDIKTLQCSDLKGAADLVWASFPCQDLS 65


>gi|85709919|ref|ZP_01040984.1| site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
 gi|85688629|gb|EAQ28633.1| site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
          Length = 356

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 22/90 (24%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHR-----NVECFFSSEINPYSVKTYQANFPNTLIFGDI 56
          ++ DLFCG+G +   L+Q  F  R     +  C F+ E N  S  T+ A         D+
Sbjct: 13 EVVDLFCGVGALSHGLKQAGFAIRAGYDTDRRCKFAFETNNDS--TFHAR--------DV 62

Query: 57 AKIKTQDIPDH------DVLLAGFPCQPFS 80
          +K+  +++  H       VL    PCQPFS
Sbjct: 63 SKLTAKEVRAHFSGDKPSVLAGCAPCQPFS 92


>gi|331703222|ref|YP_004399909.1| cytosine specific DNA methyltransferase Sau96I [Mycoplasma
          mycoides subsp. capri LC str. 95010]
 gi|328801777|emb|CBW53930.1| Cytosine specific DNA methyltransferase Sau96I [Mycoplasma
          mycoides subsp. capri LC str. 95010]
          Length = 342

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 34 EINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
          E +  +V+T + N PN  +IF D+ K+  +D+           D+L  G PCQ FS AG
Sbjct: 33 EFDKQAVETLKFNRPNWNIIFEDVQKVSQRDLKKEFNLKERELDLLSGGAPCQSFSYAG 91


>gi|304383358|ref|ZP_07365824.1| site-specific DNA-methyltransferase [Prevotella marshii DSM
          16973]
 gi|304335526|gb|EFM01790.1| site-specific DNA-methyltransferase [Prevotella marshii DSM
          16973]
          Length = 478

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIG   L        +NV   F  EI+ +        +PN++ + +I +        
Sbjct: 10 LFSGIGAPEL-AAFWLGWQNV---FHCEISEFCNTILNYWYPNSIGYENIKQADFSKWQG 65

Query: 67 H-DVLLAGFPCQPFSQAG 83
            DVL  GFPCQPFS AG
Sbjct: 66 KIDVLTGGFPCQPFSSAG 83


>gi|228964036|ref|ZP_04125166.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795688|gb|EEM43165.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 478

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 3  KITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIA--K 58
          K+ DLF G GG     L+  +     +   S +I+  + KT   +     ++ GDI   +
Sbjct: 5  KVLDLFAGGGGFSTGFLQAKYQENEFDISKSLDIDKEACKTLSNHLSEKRVVNGDITDNR 64

Query: 59 IKTQ---DIPDHDVLLAGFPCQPFSQAG 83
          IK Q   +  D DV++ G PCQ FS AG
Sbjct: 65 IKEQIFLECEDVDVIIGGPPCQTFSLAG 92


>gi|167046802|ref|YP_001661472.1| DNA methyltransferase [Acinetobacter venetianus]
 gi|83833711|gb|ABC47668.1| DNA methyltransferase [Acinetobacter venetianus]
          Length = 737

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI- 59
          L    LF G GG+ +  ++  ++    C  +S+I   +  TY  N+P+   F  DI +I 
Sbjct: 8  LNFISLFTGAGGLDIGFKEAGHN----CLLASDIMKEAELTYSYNYPSVPFFREDIRQIP 63

Query: 60 -----KTQDIPDHDVLLAGFPCQPFSQAG 83
               K     + DV++ G PCQ FS  G
Sbjct: 64 LDKFKKVIGDKEVDVIIGGPPCQGFSNMG 92



 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 18/93 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY----------QANFPNTL 51
           L+  DLF G+GG    L+       ++C   ++ + Y+V+ Y          +A+  +  
Sbjct: 371 LRFADLFSGVGGFTEGLKSA----GLDCILGADFDRYAVEAYRKNHTDHECLEADLSDEE 426

Query: 52  IFGDIA-KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I  +IA ++K Q +   D+++ G PCQ FS  G
Sbjct: 427 IQHNIAMRLKEQKV---DLVVGGPPCQGFSIFG 456


>gi|32441269|ref|NP_861528.1| tRNA (cytosine-5-)-methyltransferase [Bos taurus]
 gi|75046080|sp|Q7YS61|TRDMT_BOVIN RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2
 gi|31074159|gb|AAP20550.1| DNA cytosine-5 methyltransferase 2 [Bos taurus]
 gi|296481442|gb|DAA23557.1| tRNA (cytosine-5-)-methyltransferase [Bos taurus]
          Length = 391

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+  +L+ GIGG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRALELYSGIGGMHQALRESCIPAQVVA--AVDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    +++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFNMILMSPPCQPFTRIG 86


>gi|317179558|dbj|BAJ57346.1| cytosine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 355

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N T + GDI +I+ 
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNATGVCGDITQIEI 60

Query: 62 QD-------IPDHDVLLAGFPCQPFSQAG 83
          ++         + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|261837515|gb|ACX97281.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 355

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N T + GDI +I+ 
Sbjct: 4  KILDLFCGAGGFSAGLECL---KEFDALIGLDCDKQALITFENNHKNATGVCGDITQIEI 60

Query: 62 QD-------IPDHDVLLAGFPCQPFSQAG 83
          ++         + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|182436696|ref|YP_001824415.1| hypothetical protein SGR_2903 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178465212|dbj|BAG19732.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 359

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKI---KTQDIPDHDVLLAGFPCQPFSQAG 83
          +E +PY+   + A+ P     GDI +    + +D+   +++ AGFPC+  S AG
Sbjct: 43 AENDPYAAAVFAAHHPGVPNLGDITRADWERVRDLYRPEIVGAGFPCRNISNAG 96


>gi|114330146|ref|YP_746368.1| DNA-cytosine methyltransferase [Nitrosomonas eutropha C91]
 gi|114307160|gb|ABI58403.1| DNA-cytosine methyltransferase [Nitrosomonas eutropha C91]
          Length = 497

 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQD----IPDHDVLLAGFPCQPFSQAG 83
          SEI P+        +P+    GD+ +I  Q     +   D+L+ G PCQ FS AG
Sbjct: 37 SEIEPFPCAVLAHRYPDVPNLGDMTQIAEQVRAGLVVAPDILVGGTPCQTFSIAG 91


>gi|254416651|ref|ZP_05030402.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176617|gb|EDX71630.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 428

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 27/101 (26%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIA------- 57
           DLF G+GG  L +EQ       +   + E +P     Y+ NFP T +   D+        
Sbjct: 12  DLFAGVGGFSLGIEQA----GFDVAIAVEKDPIHAAVYKFNFPQTHVLCADVTELTGTHI 67

Query: 58  ---------------KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                          ++  +D  D +++  G PCQ FS  G
Sbjct: 68  QKALRNWCDRQKRPVRVSDRDRMDINLVFGGPPCQGFSVMG 108


>gi|315222611|ref|ZP_07864500.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
 gi|315188297|gb|EFU22023.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
          Length = 317

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 2  LKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L + +LF GIG I+  L  Q   H+ ++     EI+   VK+Y A + NT    D     
Sbjct: 6  LNVLELFGGIGAIKKALIRQKIPHKTLDYV---EIDKNCVKSYNALY-NT----DFKPKS 57

Query: 61 TQDI--PDH--DVLLAGFPCQPFSQAG 83
            D   PD   D+L+ G PCQ FS++G
Sbjct: 58 ILDFHPPDKRIDLLMHGSPCQDFSRSG 84


>gi|127429|sp|P06530|MTBR_BACSU RecName: Full=Modification methylase BsuRI; Short=M.BsuRI; AltName:
           Full=Cytosine-specific methyltransferase BsuRI
 gi|40247|emb|CAA26731.1| unnamed protein product [Bacillus subtilis]
          Length = 436

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------------QTFNH-RNVECF---FSSEINP 37
           + +  LF G GG+ L  E                      FN  RN   F   +++++  
Sbjct: 59  INVLSLFSGCGGLDLGFELAGLAAVIGEQAAMEAFKDKDRFNELRNKSIFHTIYTNDLFK 118

Query: 38  YSVKTYQANFPNTLI--FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY+ NFP  +I    DI ++K    P  +++L GFPC  FS+AG
Sbjct: 119 EANQTYKTNFPGHVIQHEKDIRQVKY--FPKCNLILGGFPCPGFSEAG 164


>gi|322691196|ref|YP_004220766.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456052|dbj|BAJ66674.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
          JCM 1217]
          Length = 509

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K   LF G  G+ + + +      +  +   E  P ++ ++ A  P     GDI KI  +
Sbjct: 7  KTISLFSGYLGLDIGVSKAIGEGELVGWSDIEPGPLALGSHHA--PKARRLGDITKIDWE 64

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
             D +V+  GF CQ  S AG
Sbjct: 65 KYKDIEVMAGGFCCQSLSLAG 85


>gi|228918462|ref|ZP_04081908.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228949261|ref|ZP_04111525.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228810387|gb|EEM56744.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228841185|gb|EEM86381.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 413

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-----SVKTYQANFPNTLIF-- 53
          M+ + +LF G+GG R+ LE+  + + V   + ++  P      +   Y   F +  I   
Sbjct: 1  MINVIELFAGVGGFRIGLEKIGHFQIV---WGNQWEPSKKAQDAFHCYAQRFQDKGIHCN 57

Query: 54 GDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
           DIA +  ++I   + ++++ GFPCQ +S A
Sbjct: 58 QDIATVTDEEIQKIEAEMIVGGFPCQDYSVA 88


>gi|302187943|ref|ZP_07264616.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
          syringae pv. syringae 642]
          Length = 307

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
          DLF G+GG      +      V+  +++   P +V+ + AN P+ + +  D+ +     +
Sbjct: 6  DLFAGLGGWSSGARRA----GVKVLWAANHWPVAVEWHSANHPDAIHVCQDLHQADWSTV 61

Query: 65 PDHDVLLAGFPCQPFSQA 82
          P HD++LA   CQ  S+A
Sbjct: 62 PAHDIMLASPCCQGHSKA 79


>gi|257421714|ref|ZP_05598704.1| predicted protein [Enterococcus faecalis X98]
 gi|257163538|gb|EEU93498.1| predicted protein [Enterococcus faecalis X98]
          Length = 286

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F G GG+ L + Q      +    S EI+     T + NF + +   DI+KI   D  D 
Sbjct: 9  FSGAGGMDLGMLQA----GINVVESFEIDKKCCATLRKNFNHKVNECDISKITVLDQQDA 64

Query: 68 DVLLAGFPCQPFS 80
          DV +  FPC  +S
Sbjct: 65 DVYIGTFPCTKYS 77


>gi|78221478|ref|YP_383225.1| C-5 cytosine-specific DNA methylase [Geobacter metallireducens
           GS-15]
 gi|78192733|gb|ABB30500.1| C-5 cytosine-specific DNA methylase [Geobacter metallireducens
           GS-15]
          Length = 331

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+  +LFCGIGG    +E      NV    + + +P ++ TY+ NFP         K+  
Sbjct: 27  LRTLELFCGIGGFSAAVEGG----NVRIVGAFDQDPAALDTYRLNFPGH----GARKVDL 78

Query: 62  QDIPDHDVLLAGF-------PCQPFSQAG 83
           + +   ++   G        PCQP+ + G
Sbjct: 79  ERVSAWELTAGGVDLWWLSPPCQPYCERG 107


>gi|61554791|gb|AAX46615.1| DNA methyltransferase 2 isoform a [Bos taurus]
          Length = 377

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+  +L+ GIGG+   L ++     V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRALELYSGIGGMHQALRESCIPAQVVA--AVDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    +++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFNMILMSPPCQPFTRIG 86


>gi|155122046|gb|ABT13914.1| hypothetical protein MT325_m360R [Paramecium bursaria chlorella
          virus MT325]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGGI   L        VE     E N  +        PN  +F D+    
Sbjct: 1  MLHAIDLFSGIGGITHGLRGI-----VEPIAYVEKNDDARGFLARKHPNVPVFDDVCTFD 55

Query: 61 -TQDIPDHDVLLAGFPCQPFSQAG 83
           T  +   D++  G+PC  FS AG
Sbjct: 56 ATPYLGKVDIITGGWPCTGFSTAG 79


>gi|268607976|ref|ZP_06141707.1| cytosine-specific DNA-methyltransferase Sau96I [Ruminococcus
           flavefaciens FD-1]
          Length = 407

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 15/88 (17%)

Query: 6   DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           +LF G GG+ L +E+  FN   +      E++  +  T + N P   +I  DIA +   D
Sbjct: 78  ELFAGAGGLALGVEKAGFNTLGL-----VEVDKDASDTLRRNRPEWRVINDDIANVSCLD 132

Query: 64  IPDH--------DVLLAGFPCQPFSQAG 83
           + ++        D+L  G PCQ FS AG
Sbjct: 133 LQEYFGLKQGELDLLSGGAPCQSFSYAG 160


>gi|167747653|ref|ZP_02419780.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239625035|ref|ZP_04668066.1| modification methylase Rho11sI [Clostridiales bacterium
          1_7_47_FAA]
 gi|167653015|gb|EDR97144.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239521421|gb|EEQ61287.1| modification methylase Rho11sI [Clostridiales bacterium
          1_7_47FAA]
          Length = 504

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 34 EINPYSVKTYQA--NFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          E + Y+VK+Y A      +   GDI K+  + +P  + +  G PCQ FS +G
Sbjct: 10 EFDKYAVKSYCAIHGVDESANLGDITKVDEKKLPYFNFICGGSPCQDFSLSG 61


>gi|33338827|gb|AAQ14149.1| Dmt, incomplete [Enterobacteria phage P1]
          Length = 638

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVWGTPCQAFSIAG 85


>gi|46401691|ref|YP_006537.1| Dmt [Enterobacteria phage P1]
 gi|33338718|gb|AAQ14041.1| Dmt [Enterobacteria phage P1]
          Length = 754

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQAG 83
          +EI P+        +P+    GD+ K+  +    +I   DVL+ G PCQ FS AG
Sbjct: 31 AEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGEIESPDVLVWGTPCQAFSIAG 85


>gi|155370467|ref|YP_001426001.1| hypothetical protein FR483_N369L [Paramecium bursaria Chlorella
          virus FR483]
 gi|155123787|gb|ABT15654.1| hypothetical protein FR483_N369L [Paramecium bursaria Chlorella
          virus FR483]
          Length = 342

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGGI   L        VE     E N  +        PN  +F D+    
Sbjct: 1  MLHAIDLFSGIGGITHGLRGI-----VEPVAYVEKNDDARGFLAQKHPNVPVFDDVCTFD 55

Query: 61 -TQDIPDHDVLLAGFPCQPFSQAG 83
           T  +   D++  G+PC  FS AG
Sbjct: 56 ATPYLGKVDIITGGWPCTGFSTAG 79


>gi|167621147|ref|ZP_02389778.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
          Bt4]
          Length = 355

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCG+GG+   L +      ++     +I+      ++AN     +  D+ K+K ++I 
Sbjct: 18 DLFCGVGGLTHGLVRG----GIQVSAGIDIDTSCKFPFEANNSAVFLERDVGKLKAEEIA 73

Query: 65 PDHD----VLLAG-FPCQPFS 80
          P ++     LLAG  PCQPFS
Sbjct: 74 PFYEGADITLLAGCAPCQPFS 94


>gi|167560986|ref|ZP_02353902.1| site-specific DNA-methyltransferase [Burkholderia oklahomensis
          EO147]
          Length = 355

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCG+GG+   L +      ++     +I+      ++AN     +  D+ K+K ++I 
Sbjct: 18 DLFCGVGGLTHGLVRG----GIQVSAGIDIDTSCKFPFEANNSAVFLERDVGKLKAEEIA 73

Query: 65 PDHD----VLLAG-FPCQPFS 80
          P ++     LLAG  PCQPFS
Sbjct: 74 PFYEGADITLLAGCAPCQPFS 94


>gi|282880843|ref|ZP_06289537.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281305284|gb|EFA97350.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 374

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 29/106 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD----- 55
           + + D+F G+GG+ +  E+  FN        ++EI+    ++Y+ N  +T++  +     
Sbjct: 1   MNVVDIFSGVGGLSVGFEKAGFN-----VVLANEIDEQIAQSYKRNHTHTIMVNEDIRSF 55

Query: 56  -------IAKIKT-----------QDIPDHDVLLAGFPCQPFSQAG 83
                  I+K              Q++ D +V++ G PCQ FS AG
Sbjct: 56  VDHFDDSISKATERLNSNCKEKLYQELNDINVVIGGPPCQGFSMAG 101


>gi|18202059|sp|O52702|MTA1_ACEPA RecName: Full=Modification methylase ApaLI; Short=M.ApaLI;
          AltName: Full=Cytosine-specific methyltransferase ApaLI
 gi|2865599|gb|AAC97180.1| ApaLI methyltransferase [Acetobacter pasteurianus]
          Length = 429

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG        F+   ++  F +EIN  + +TYQ N  +     D++ +    
Sbjct: 7  VVSLFAGAGG----FSSGFSQAGLKPLFGAEINADACQTYQENVGSPCHQLDLSTVD--- 59

Query: 64 IPDHD----------VLLAGFPCQPFSQAG 83
           P H           V++ G PCQ FS AG
Sbjct: 60 -PSHIEMLTGGKRPFVVIGGPPCQGFSTAG 88


>gi|1644234|dbj|BAA11339.1| ApaLI methylase [Acetobacter pasteurianus]
          Length = 429

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG        F+   ++  F +EIN  + +TYQ N  +     D++ +    
Sbjct: 7  VVSLFAGAGG----FSSGFSQAGLKPLFGAEINADACQTYQENVGSPCHQLDLSTVD--- 59

Query: 64 IPDHD----------VLLAGFPCQPFSQAG 83
           P H           V++ G PCQ FS AG
Sbjct: 60 -PSHIEMLTGGKRPFVVIGGPPCQGFSTAG 88


>gi|113477918|ref|YP_723979.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168966|gb|ABG53506.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 4  ITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          + D+F G GG+ L  E Q F     E      +N     TY  N         IA     
Sbjct: 21 VIDIFAGCGGLSLGFEAQGFTTHGFE------MNADCCATYNKNLKGNCT--QIALTSET 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P   V++ G PCQPFS  G
Sbjct: 73 KLPPGKVIIGGPPCQPFSVGG 93


>gi|326775654|ref|ZP_08234919.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655987|gb|EGE40833.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 324

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
          +E +P++ +      P     G I +I   D+    PD D L+AG+PCQ  S  G
Sbjct: 35 AEKDPWAAQVMAGLLPGVENLGSIDEINYADVAATYPDLDTLIAGWPCQGISNNG 89


>gi|210621902|ref|ZP_03292899.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
 gi|210154533|gb|EEA85539.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
          Length = 438

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 28/102 (27%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--------------------- 44
           DLFCG GG    L Q   H      FSS+I+     TY+                     
Sbjct: 6   DLFCGAGGCSEGLIQAGFH----ILFSSDISEMVEVTYKNRHEQLGLIQGKNTWFERSDI 61

Query: 45  ANFPNTLIFGDIAKI---KTQDIPDHDVLLAGFPCQPFSQAG 83
            +     IF  I  +   K Q IP+ D+L+ G  CQ FS+AG
Sbjct: 62  RDLTGETIFKCIESLDIFKNQKIPEIDLLIGGPSCQGFSRAG 103


>gi|228989002|ref|ZP_04149032.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228770724|gb|EEM19259.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 445

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 4  ITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          +  +F G GG+ +   E  FN +      + E++P +  TY+ N P T ++  DI  +K 
Sbjct: 15 VIGIFAGCGGLDMGFFECDFNVQ-----LAIELDPDACNTYKKNHPETEVWNRDIKTVKG 69

Query: 62 QDIPDHD-----VLLAGFPCQPFS 80
           +I         +LL G PCQ FS
Sbjct: 70 DEIRKQVGNKPLILLGGSPCQSFS 93


>gi|217032842|ref|ZP_03438321.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298737011|ref|YP_003729541.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945425|gb|EEC24089.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298356205|emb|CBI67077.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 361

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE+       +     + +  ++ T++ N  N + + GDI +   
Sbjct: 4  KILDLFCGAGGFSAGLERL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQAAI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK       ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLGINMIIGGPPCQGFSNKG 89


>gi|315604954|ref|ZP_07880010.1| modification methylase [Actinomyces sp. oral taxon 180 str.
          F0310]
 gi|315313349|gb|EFU61410.1| modification methylase [Actinomyces sp. oral taxon 180 str.
          F0310]
          Length = 322

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 18/91 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          L   ++  G GG  L LEQ  F+H  V      EI+ ++  T + N P   +I GD+   
Sbjct: 3  LTSIEICAGAGGQALGLEQAGFDHLAV-----VEIDHHACNTLRENRPQWNVIEGDVVPW 57

Query: 60 KTQDIPDH-------DVLLAGFPCQPFSQAG 83
              I DH       D++  G PC PFS AG
Sbjct: 58 ----IRDHAHEYRGVDLVAGGVPCPPFSYAG 84


>gi|240143270|ref|ZP_04741871.1| modification methylase BspRI [Roseburia intestinalis L1-82]
 gi|257204748|gb|EEV03033.1| modification methylase BspRI [Roseburia intestinalis L1-82]
          Length = 432

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 18  LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-KTQDIPDHDVLLAGFPC 76
            ++  N+      + ++I   + +TY  N     I+ D + I K ++ P  D++L GFPC
Sbjct: 98  FDENINNNVFNTIYVNDIFDEARETYAQN-AGKYIYMDKSDIRKIKEFPKADIVLGGFPC 156

Query: 77  QPFSQAG 83
             FS+AG
Sbjct: 157 PGFSEAG 163


>gi|157112484|ref|XP_001657555.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
 gi|108878059|gb|EAT42284.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
          Length = 344

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ +LF GIGG+   +E++   +  +   + +INP +   Y  NF  N     +I  +  
Sbjct: 16 QVLELFSGIGGMHFAIERS--GKRYKVVSAIDINPVANAIYNHNFGANKASNSNILSLTP 73

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
            I     +V+L   PCQPFS+ G
Sbjct: 74 DRIQKLGVNVILMSPPCQPFSRNG 97


>gi|29566171|ref|NP_817742.1| gp65 [Mycobacterium phage Che9c]
 gi|29424896|gb|AAN12623.1| gp65 [Mycobacterium phage Che9c]
          Length = 513

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ML +TDLFCG GG             VE   +S     +V+T+  N P+   +  D+++I
Sbjct: 1  MLTLTDLFCGAGG---SSTGAIEIPGVEVRVASNHWDLAVETHNTNHPDADHVCADLSQI 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +  P  D+L A   C   S A
Sbjct: 58 DPRRFPRTDILWASPECTNHSVA 80


>gi|330998524|ref|ZP_08322345.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
 gi|329568255|gb|EGG50071.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
          Length = 379

 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M+   ++F G GG+   +E        + F   E N  + KT + N+   ++F  DI   
Sbjct: 1  MINSLEIFSGAGGLAKGIEMAGARH--QAFV--EWNGDACKTLRWNYSPDIVFETDIRDF 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +     + DV+  G PCQPFS  G
Sbjct: 57 QFSQFSNIDVIAGGPPCQPFSLGG 80


>gi|301321505|gb|ADK68895.1| Site-specific DNA methylase [Gordonia sp. KTR9]
          Length = 331

 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L +TD+F G GG    + Q      V    ++   P +V T+Q N P+T  I  +++++ 
Sbjct: 18 LTMTDIFSGAGGSSEGMTQA----GVSVQVAANHWPVAVATHQVNHPDTEHILANLSEVD 73

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +  P  D+L A   C   +++G
Sbjct: 74 WRSFPSTDILWASPSCVWHARSG 96


>gi|328947445|ref|YP_004364782.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328447769|gb|AEB13485.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 445

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDI----AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          SEI  +     +  +PN    GD+     KI T +I   D++  G PCQ FS AG
Sbjct: 31 SEIAEFQSNFLRIKYPNIKNLGDMNLIGKKIATAEIDSPDLICGGTPCQAFSLAG 85


>gi|205374924|ref|ZP_03227716.1| DNA-cytosine methyltransferase [Bacillus coahuilensis m4-4]
          Length = 323

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLF G GG+ L     F +   E   + E    ++  Y+ NF + +   D++ +K 
Sbjct: 1  MRVIDLFSGCGGMSL----GFQNAGFEIVSAFENWDEAIDIYRKNFQHPICKYDLSDVKD 56

Query: 62 QD---IPDHDVLLAGFPCQPFSQAG 83
           +     + D+++ G PCQ +S AG
Sbjct: 57 YNDFSKLNPDIIIGGPPCQDYSSAG 81


>gi|301766512|ref|XP_002918675.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Ailuropoda
          melanoleuca]
          Length = 391

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+  +L+ GIGG+   L ++    +V    + ++N  + + Y+ NFP+T +     +   
Sbjct: 4  LRALELYSGIGGMHQALRESCVPAHVVA--AIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  D    + +L   PCQPF++ G
Sbjct: 62 LEEFDKLSFNTILMSPPCQPFTRIG 86


>gi|226349837|ref|YP_002776950.1| modification methylase [Rhodococcus opacus B4]
 gi|226245752|dbj|BAH47019.1| modification methylase [Rhodococcus opacus B4]
          Length = 428

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          ++ ++  G GG  L LE+  F+H+      + E++  +  T + N P+  +  GD+A   
Sbjct: 15 QVVEICAGAGGQALGLEKAGFSHK-----LAVELDTNACATLKLNRPDWDVEEGDVADPT 69

Query: 61 TQDIPDH---DVLLAGFPCQPFSQAG 83
               +H   D+L  G PC PFS AG
Sbjct: 70 VWKPSEHEGVDLLAGGVPCPPFSIAG 95


>gi|291566149|dbj|BAI88421.1| type II DNA modification methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 379

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQD 63
          +LF G GG+   LE     H+ +      EI+  +  T   N+ P  + + DI  +   +
Sbjct: 5  ELFAGAGGLAKGLEMAGIEHKAL-----VEIDHNACLTLAGNYKPELIYYVDIRSLNFAE 59

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PCQPFS  G
Sbjct: 60 FGHIDLISGGPPCQPFSMGG 79


>gi|284052085|ref|ZP_06382295.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 382

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQD 63
          +LF G GG+   LE     H+ +      EI+  +  T   N+ P  + + DI  +   +
Sbjct: 8  ELFAGAGGLAKGLEMAGIEHKAL-----VEIDHNACLTLAGNYKPELIYYVDIRSLNFAE 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PCQPFS  G
Sbjct: 63 FGHIDLISGGPPCQPFSMGG 82


>gi|238922582|ref|YP_002936095.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
          33656]
 gi|238874254|gb|ACR73961.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
          33656]
          Length = 443

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGDI 56
          KI DLF G GG+ L  E+       +     E+ P + KT   N         T I GDI
Sbjct: 4  KIIDLFSGCGGLALGFEKA----GFDIVAGIELMPEACKTISYNLSWRYGKKETHICGDI 59

Query: 57 AKIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
           +I+     +       +++ G PCQ +S AG
Sbjct: 60 TEIEASVFKNSFGDEGCIVIGGPPCQAYSMAG 91


>gi|111656823|ref|ZP_01407675.1| hypothetical protein SpneT_02001911 [Streptococcus pneumoniae
          TIGR4]
 gi|148994722|ref|ZP_01823806.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP9-BS68]
 gi|148999034|ref|ZP_01826467.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP11-BS70]
 gi|307067986|ref|YP_003876952.1| site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|147755157|gb|EDK62211.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP11-BS70]
 gi|147927053|gb|EDK78094.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP9-BS68]
 gi|306409523|gb|ADM84950.1| Site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|332074668|gb|EGI85142.1| modification methylase HpaII [Streptococcus pneumoniae GA17545]
 gi|332200781|gb|EGJ14853.1| modification methylase HpaII [Streptococcus pneumoniae GA41317]
 gi|332201799|gb|EGJ15869.1| modification methylase HpaII [Streptococcus pneumoniae GA47368]
          Length = 392

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH---------DVLLAGFPCQP 78
          EC    EI+ ++ K+Y++ F      G+I     +D+ D          DV+  GFPCQ 
Sbjct: 9  ECLGFCEIDKFARKSYKSIFQTE---GEIEFHDIRDVSDDEFKKLRGKVDVICGGFPCQA 65

Query: 79 FSQAG 83
          FS AG
Sbjct: 66 FSIAG 70


>gi|78189586|ref|YP_379924.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii
          CaD3]
 gi|78171785|gb|ABB28881.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii
          CaD3]
          Length = 359

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCGIGG+   L+++     ++     +I+     +++ N     I  DI K++ +++ 
Sbjct: 11 DLFCGIGGLTYGLKKS----GIQVKAGIDIDESCRYSFEENCGTKFINKDIQKLQKEELN 66

Query: 65 -----PDHDVLLAGFPCQPFS 80
                +  +L+   PCQPFS
Sbjct: 67 SIYGNAEIKILVGCAPCQPFS 87


>gi|307941961|ref|ZP_07657314.1| modification methylase NgoPII [Roseibium sp. TrichSKD4]
 gi|307774867|gb|EFO34075.1| modification methylase NgoPII [Roseibium sp. TrichSKD4]
          Length = 390

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF G GG+ L  E       +    + + + Y+V +Y  N        D+ ++ +
Sbjct: 1  MKAISLFSGCGGMDLGFENA----GISILAAYDSDSYAVSSYNRNVKLCARRIDVNRLDS 56

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
            IP + D+L+A  PCQ FS AG
Sbjct: 57 --IPSNFDILIATPPCQGFSTAG 77


>gi|317051620|ref|YP_004112736.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
 gi|316946704|gb|ADU66180.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
          Length = 306

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
          DLF G+GG             +   +++   P +VK +  N P+T     D+ +   + +
Sbjct: 5  DLFAGLGGWSTGARMA----GIHILWAANHWPEAVKWHAKNHPDTAHACQDLHQANWEQV 60

Query: 65 PDHDVLLAGFPCQPFSQA 82
          P HD+LLA   CQ  S+A
Sbjct: 61 PSHDILLASPCCQGHSRA 78


>gi|317057160|ref|YP_004105627.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449429|gb|ADU22993.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 407

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           +LF G GG+ L +E+             E++  +  T + N P   +I  DIA I   D+
Sbjct: 78  ELFAGAGGLALGVEKA----GFITLGLVEVDKDASDTLRRNRPEWRVINDDIANISCLDL 133

Query: 65  PDH--------DVLLAGFPCQPFSQAG 83
            D+        D+L  G PCQ FS AG
Sbjct: 134 QDYFGLKKGELDLLSGGAPCQSFSYAG 160


>gi|282859820|ref|ZP_06268914.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587440|gb|EFB92651.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 356

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 23/91 (25%)

Query: 2  LKITDLFCGIGGIR-------LDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          +K+ DLFCGIGG+         D+   +++ +  C F+ E+N ++               
Sbjct: 6  IKVVDLFCGIGGLSNGFFQEGFDVVAGYDN-DKSCKFAYEVNNHA----------KFHLA 54

Query: 55 DIAKIKTQDIPDH-----DVLLAGFPCQPFS 80
          DI K+  ++I         +L+   PCQPFS
Sbjct: 55 DITKVTGKEINQQFGDSLKILVGCAPCQPFS 85


>gi|242316067|ref|ZP_04815083.1| modification methylase HgiDII [Burkholderia pseudomallei 1106b]
 gi|242139306|gb|EES25708.1| modification methylase HgiDII [Burkholderia pseudomallei 1106b]
          Length = 349

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLFCG GG    L   F   ++      +++P     Y+AN     +  D++ + T
Sbjct: 9  ISCVDLFCGAGG----LTHGFVLEDLPVVAGIDLDPACRYPYEANNRAKFVERDVSTVTT 64

Query: 62 QDIP----DHDV-LLAG-FPCQPFS 80
          +++     D ++ +LAG  PCQPFS
Sbjct: 65 EELETLFGDAELTILAGCAPCQPFS 89


>gi|126453573|ref|YP_001067912.1| modification methylase HgiDII [Burkholderia pseudomallei 1106a]
 gi|126227215|gb|ABN90755.1| modification methylase HgiDII [Burkholderia pseudomallei 1106a]
          Length = 344

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLFCG GG    L   F   ++      +++P     Y+AN     +  D++ + T
Sbjct: 4  ISCVDLFCGAGG----LTHGFVLEDLPVVAGIDLDPACRYPYEANNRAKFVERDVSTVTT 59

Query: 62 QDIP----DHDV-LLAG-FPCQPFS 80
          +++     D ++ +LAG  PCQPFS
Sbjct: 60 EELETLFGDAELTILAGCAPCQPFS 84


>gi|325270514|ref|ZP_08137114.1| modification methylase HindV [Prevotella multiformis DSM 16608]
 gi|324987090|gb|EGC19073.1| modification methylase HindV [Prevotella multiformis DSM 16608]
          Length = 320

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--AKI 59
          +K  DLFCG GG+ L  +Q   +  V  + + +    +   Y+ NF + +   D+  A  
Sbjct: 1  MKAVDLFCGCGGLSLGFQQA-GYNVVAAYDNWDA---ATDVYRLNFSHPVHKADLMDAGK 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
           ++ I  +  ++++ G PCQ +S AG
Sbjct: 57 ASESIARYAPEIIIGGPPCQDYSSAG 82


>gi|229825108|ref|ZP_04451177.1| hypothetical protein GCWU000182_00458 [Abiotrophia defectiva ATCC
          49176]
 gi|331003746|ref|ZP_08327240.1| hypothetical protein HMPREF0491_02102 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|229790480|gb|EEP26594.1| hypothetical protein GCWU000182_00458 [Abiotrophia defectiva ATCC
          49176]
 gi|330412129|gb|EGG91524.1| hypothetical protein HMPREF0491_02102 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 305

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 1  MLKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M K+T   LF GIGGI L  E        +C    E   +     + ++P    F DI  
Sbjct: 1  MKKLTHFSLFTGIGGIDLAAEAAGFSTICQC----EWADFPTAVLKKHWPKVPRFQDITT 56

Query: 59 IKTQDIPDHD------VLLAGFPCQPFSQAG 83
          +  +   +        ++  GFPCQPFS  G
Sbjct: 57 VTKEAFIEKTGQESVTLISGGFPCQPFSAIG 87


>gi|197105892|ref|YP_002131269.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
 gi|196479312|gb|ACG78840.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
          Length = 508

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFG---DIAK 58
           ++ DLF G GG+ L     F+ +  +   + E +P +  ++ ANF P     G   DI +
Sbjct: 34  RVLDLFSGCGGLSLG----FHAQGFDIVAAVEFDPAAAASHGANFHPEDPRHGRPRDITR 89

Query: 59  IKTQDIPDH----------DVLLAGFPCQPFSQAG 83
           +  + +             DVL+ G PCQ F++ G
Sbjct: 90  LTPEQLALELDLGPVEQAVDVLVGGPPCQAFARVG 124


>gi|210630626|ref|ZP_03296529.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
 gi|210160401|gb|EEA91372.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
          Length = 402

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--------- 56
           DLF G GG+ L     F     +   S++I P  +KT+ AN     I GDI         
Sbjct: 142 DLFAGAGGLALG----FVWAGWQPVVSNDIVPDFLKTHAANIDGATICGDISDPEILNSI 197

Query: 57  ----AKIKTQDIPDHDV-LLAGFPCQPFSQA 82
               AK + +D PD  + +L G PCQ FS A
Sbjct: 198 CDAAAKFR-KDNPDSPLFVLGGPPCQGFSTA 227


>gi|42560766|ref|NP_975217.1| cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma
          mycoides subsp. mycoides SC str. PG1]
 gi|42492262|emb|CAE76859.1| Cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma
          mycoides subsp. mycoides SC str. PG1]
 gi|301320716|gb|ADK69359.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 341

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 34 EINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
          E +  +V+T + N PN  ++F D+ K+  +D+           D+L  G PCQ FS AG
Sbjct: 33 EFDKQAVETLKFNSPNWNIVFEDVQKVSQRDLKKEFNLKERELDLLSGGAPCQSFSYAG 91


>gi|284054995|ref|ZP_06385205.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 74

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T+ I
Sbjct: 11 DLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREISTEQI 66

Query: 65 PD 66
           +
Sbjct: 67 RE 68


>gi|257387778|ref|YP_003177551.1| DNA methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257170085|gb|ACV47844.1| DNA methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 239

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DL  G+GG     E   N R V      E  P              I  D+  ++  D+P
Sbjct: 15 DLCAGLGGFSSAFEDAENWRVVTVEIEEEFEPD-------------ICADVLNLRPADLP 61

Query: 66 DHDVLLAGFPCQPFSQA 82
            D++LA  PC  FS+A
Sbjct: 62 AADIVLASPPCTTFSKA 78


>gi|270265139|ref|ZP_06193402.1| hypothetical protein SOD_k01780 [Serratia odorifera 4Rx13]
 gi|270041073|gb|EFA14174.1| hypothetical protein SOD_k01780 [Serratia odorifera 4Rx13]
          Length = 350

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI 64
          DLFCG GG+   L+        +     E+   +  TY+ N P+ +++  DI  +  Q I
Sbjct: 7  DLFCGAGGLTCGLKDA----GFKVLAGVEVEAVAADTYRTNHPDHVLYEADIRTLDPQKI 62

Query: 65 --------PDHDVLLAGFPCQPFS 80
                   D D+L    PCQ FS
Sbjct: 63 MQELHLQPGDLDLLAGCPPCQGFS 86


>gi|299531463|ref|ZP_07044871.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
 gi|298720626|gb|EFI61575.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
          Length = 435

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 7   LFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-----GDIAKIK 60
           LF G GG+ L  E+  F+H       S EI     +T ++N P   ++     GD+    
Sbjct: 123 LFAGGGGLDLGFERAGFSHTA-----SFEILDVCGETLRSNRPEWTVYSGAEAGDVRTAP 177

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             +    D++  G PCQPFS AG
Sbjct: 178 FSNFRGVDIVHGGPPCQPFSIAG 200


>gi|307140960|ref|ZP_07500316.1| DNA-cytosine methyltransferase [Escherichia coli H736]
 gi|331645014|ref|ZP_08346131.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
 gi|331035989|gb|EGI08227.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
          Length = 413

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLI 52
          +K  +LF G GG+ +  E   F H  V      E + ++  T + N  N         L 
Sbjct: 12 MKSVELFAGAGGLAMGCEIAGFEHLAV-----VEWDKWACDTVRENKKNGFPLLSDWDLF 66

Query: 53 FGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           GD+ +     IP   D+L  G PCQPFS  G
Sbjct: 67 EGDVREFDWSKIPKGIDLLAGGPPCQPFSIGG 98


>gi|113478056|ref|YP_724117.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169104|gb|ABG53644.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 345

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCG GG+    E+     NV      +I+P     Y+ N     I   +  I++ ++ 
Sbjct: 8  DLFCGAGGLTHGFEKAGLPVNV----GYDIDPVCKFPYEYNNKAKFILKSVEDIESMELA 63

Query: 66 DH------DVLLAGFPCQPFS 80
           H       VL    PCQPFS
Sbjct: 64 KHFPICHLKVLAGCSPCQPFS 84


>gi|225849813|ref|YP_002730047.1| putative modification methylase FnuDI [Persephonella marina
          EX-H1]
 gi|225646519|gb|ACO04705.1| putative modification methylase FnuDI [Persephonella marina
          EX-H1]
          Length = 307

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG+GG    L +             +IN +  K ++ N     I  D+     
Sbjct: 1  MKVLDLFCGMGGFSYGLSKAGYE-----ITGVDINKWVEKIFEKNCIGKAIIKDLKNDFI 55

Query: 62 QDIPDHDVLLAGFPCQPFS 80
           D  + D+++ G PC+P+S
Sbjct: 56 FD-ENPDIIVGGSPCKPWS 73


>gi|212695555|ref|ZP_03303683.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677433|gb|EEB37040.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 17/89 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +KI +LF GIG IR    + F +  +  E     EI+   VK+Y A      ++G+  K 
Sbjct: 4  VKILELFGGIGAIR----KAFINLKIPYEVVDYVEIDKACVKSYNA------LYGENYKP 53

Query: 60 KT---QDIPDH--DVLLAGFPCQPFSQAG 83
          K+     IP+   D+++ G PCQ FS+ G
Sbjct: 54 KSVVGYKIPNEKIDLIMHGSPCQDFSRIG 82


>gi|328769954|gb|EGF79997.1| hypothetical protein BATDEDRAFT_35320 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 621

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  + F GIGG+   LE       V   F  +INP +   Y  NF    +   I  +  
Sbjct: 5  VRALEFFSGIGGMHFGLEWAAIDAKVVAAF--DINPQANACYNHNFGLEPVEKSIQDLNP 62

Query: 62 QDIPDHDV--LLAGFPCQPFSQAG 83
          +++  +D    L   PCQP+++ G
Sbjct: 63 KELERYDANCWLMSPPCQPYTRTG 86


>gi|153852755|ref|ZP_01994192.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
 gi|149754397|gb|EDM64328.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
          Length = 367

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D+L AGFPCQ FS AG
Sbjct: 1  MPDFDLLCAGFPCQAFSIAG 20


>gi|313668701|ref|YP_004048985.1| modification methylase [Neisseria lactamica ST-640]
 gi|313006163|emb|CBN87625.1| putative modification methylase [Neisseria lactamica 020-06]
          Length = 372

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
          +  +F GIG +    EQ F   N+     F+ +I+ +  K+Y  N+     F   DI + 
Sbjct: 1  MATVFSGIGAV----EQAFYRLNLNHTIVFAGDIDSHVKKSYLGNYKLNEDFWHNDITQF 56

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
            +   +  D+L+ G PCQ FS  G
Sbjct: 57 DARKFRNQVDILVGGSPCQAFSMVG 81


>gi|146309050|ref|YP_001189515.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
 gi|145577251|gb|ABP86783.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
          Length = 365

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML + DLF G GG+ L  +Q           + +I+P    ++  NFP+           
Sbjct: 1  MLTLLDLFSGCGGLTLGAKQA----GFTTELAVDIDPILSSSFGLNFPSVPFLNADVTTL 56

Query: 61 TQD-----IPDH-DVLLAGFPCQPFSQAG 83
          T D     +P   D ++ G PCQ FS  G
Sbjct: 57 TSDRLKALLPSGVDGVIGGPPCQAFSGMG 85


>gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus
           stearothermophilus]
          Length = 1068

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDI--AKIKT 61
           DLF G GG    L   F    +E   + EI+  + +TY  N  + +  I GDI   +I+ 
Sbjct: 796 DLFAGAGG----LSYGFELAGLEGMAALEIDKDAAETYAKNHSSNIDVIVGDIRSPEIQN 851

Query: 62  QDIPD---------HDVLLAGFPCQPFSQAG 83
           Q I            D++  G PCQ FS AG
Sbjct: 852 QLIESVKNKLKGRTLDLIAGGLPCQGFSTAG 882


>gi|290892537|ref|ZP_06555530.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
 gi|290557846|gb|EFD91367.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
          Length = 409

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 31  FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +S+++   + +TY ANF + ++  ++   K  + P  ++++ GFPC  FS AG
Sbjct: 110 YSNDMFKEANETYLANFQSNILKQELDIRKIPNFPKCELMIGGFPCPGFSAAG 162


>gi|94263940|ref|ZP_01287743.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium
          MLMS-1]
 gi|93455685|gb|EAT05864.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium
          MLMS-1]
          Length = 366

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---------NTLIFG 54
          + D FCG GG      + F    ++  F+ +  P +  T++ NFP         N L   
Sbjct: 12 VFDFFCGCGGT----SRGFQKAGIDVAFALDTGPDAKSTFERNFPGTFFCHKSINELNAS 67

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          D+  I       + +     PCQPF++
Sbjct: 68 DLEPILQAHKNGYKLFCGCAPCQPFTR 94


>gi|114776547|ref|ZP_01451592.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553377|gb|EAU55775.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           +I DLFCGIG + L L            F +E+NP SV+  Q N
Sbjct: 274 RIADLFCGIGNLSLPLAVATGAE----LFGAELNPASVRAAQTN 313


>gi|307152624|ref|YP_003888008.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982852|gb|ADN14733.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 708

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF G GG+ L  E              E++  +  TYQ N         + +  T  
Sbjct: 34  VIDLFAGCGGLALGFEAAGFKTT-----GYEMSEEACATYQYNLHGRCENITLTRYPTL- 87

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           I +  V++AG PCQPFS+ G
Sbjct: 88  IDNPKVIIAGPPCQPFSKGG 107


>gi|239929797|ref|ZP_04686750.1| putative 5-methylcytosine methyltransferase [Streptomyces
          ghanaensis ATCC 14672]
 gi|291438128|ref|ZP_06577518.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291341023|gb|EFE67979.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 356

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI DLF G GG+ +  E+      V      E +  +  T +A    T + GD+      
Sbjct: 5  KIVDLFAGPGGLDVAAEKL----GVPTV-GIEWDSAACATRRAAGLET-VEGDVRLYGPS 58

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D P+ DVL  G PCQ F+ AG
Sbjct: 59 DFPEADVLAGGPPCQTFTVAG 79


>gi|217965593|ref|YP_002351271.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|217334863|gb|ACK40657.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|307569856|emb|CAR83035.1| methyltransferase [Listeria monocytogenes L99]
          Length = 411

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 31  FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +S+++   + +TY ANF + ++  ++   K  + P  ++++ GFPC  FS AG
Sbjct: 110 YSNDMFKEANETYLANFQSNILKQELDIRKIPNFPKCELMIGGFPCPGFSAAG 162


>gi|154173655|ref|YP_001409100.1| cytosine-specific methyltransferase NlaX [Campylobacter curvus
          525.92]
 gi|112802981|gb|EAU00325.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          curvus 525.92]
          Length = 352

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFG 54
          + +  +F GIG       + F   ++   F+ EI+ ++ ++Y AN       F   +   
Sbjct: 6  IALATIFSGIGSAEFAAREVFAEYDMA--FACEIDKFARQSYLANHAIDEKHFHCNIKEL 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          D AKI T  +   DVL+ G PCQ FS AG
Sbjct: 64 D-AKIYTDKV---DVLIGGSPCQDFSLAG 88


>gi|291515626|emb|CBK64836.1| DNA-methyltransferase (dcm) [Alistipes shahii WAL 8301]
          Length = 360

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   ++     +        +++      Y+ N     I+ DI  +  
Sbjct: 14 IEVIDLFCGIGGLSFGMKS----KGFNILAGYDLDATCRYAYETNNNAKFIYKDIKTVSP 69

Query: 62 QDIPDH------DVLLAGFPCQPFS 80
           +I          VL    PCQPFS
Sbjct: 70 DEIRTAYGKGSIRVLAGCAPCQPFS 94


>gi|325679553|ref|ZP_08159133.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108840|gb|EGC03076.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 708

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDI--AKIK 60
           + DLF G GG    +E+  + R      + + N  +++T++ N P+T ++ GDI  + +K
Sbjct: 351 VLDLFSGAGGFSYGIEKNEHFRTA---IALDFNEQALQTFKHNMPDTEIVHGDITDSAVK 407

Query: 61  TQDI-----PDHDVLLAGFPCQPFSQAG 83
            + I        ++++ G PCQ FS  G
Sbjct: 408 ERIISLSKEKKVNMVIGGPPCQGFSLKG 435


>gi|317127845|ref|YP_004094127.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472793|gb|ADU29396.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 363

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAK 58
          KI DLF G+GG  L  E        E   + +    +++TY  N  N     +   D++K
Sbjct: 5  KIIDLFSGVGGFSLGFEMA----GYETVLAIDFWKDAIETYNHNRENKVAEVMSIHDLSK 60

Query: 59 IKTQDI-PDHDV--LLAGFPCQPFSQAG 83
           + + +  DH +  ++ G PCQ FS  G
Sbjct: 61 ERLEKLKSDHTIEGIIGGPPCQGFSTVG 88


>gi|182437151|ref|YP_001824870.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465667|dbj|BAG20187.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 363

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQD 63
           LF G GG+ L +E        E   + E N  +V T + NF    + +I  DI ++ T++
Sbjct: 20  LFSGAGGLDLGVEAA----GYEVRAAVEHNADAVATMEKNFSHLQSEVIQRDILEVPTKE 75

Query: 64  I---------PDHDVLLAGFPCQPFSQAG 83
           +            D+L+ G PC PFS++G
Sbjct: 76  LLGAAGLKGRERPDLLVGGPPCTPFSKSG 104


>gi|219848287|ref|YP_002462720.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542546|gb|ACL24284.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          + DLF G GG+       F  +      + E +P + +TY  N P   ++  DI  I   
Sbjct: 9  MIDLFAGCGGV----TTGFKAKGFNVLAAVEFDPVTAQTYHLNHPEVALYVQDIRDISPN 64

Query: 63 DIPDH--------DVLLAGFPCQPFSQ 81
          ++            VL    PCQPFS+
Sbjct: 65 EMMARCRLERGHLTVLSVCAPCQPFSK 91


>gi|75812610|ref|YP_320229.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
 gi|75705366|gb|ABA25040.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
          Length = 253

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 1  MLKITDLFCGIGGI------RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          M  +  LF GIGG+         L   F  R        EI+PYS    +   P T I  
Sbjct: 1  MKSVLSLFSGIGGLCHHGIAAAGLSHKFQVRQF-----VEISPYSQSVLRYEQPQTPIHS 55

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI           D+L  GFPC   S +G
Sbjct: 56 DITTYHCNR-GQFDILCGGFPCAGTSNSG 83


>gi|308183851|ref|YP_003927984.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SJM180]
 gi|308059771|gb|ADO01667.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SJM180]
          Length = 355

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--I 59
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N + + GDI +  I
Sbjct: 4  KILDLFCGAGGFSAGLEYL---KEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
          K + I      + ++++ G PCQ FS  G
Sbjct: 61 KEKVIELAKKLEINMIIGGPPCQGFSNKG 89


>gi|315268237|gb|ADT95090.1| DNA-cytosine methyltransferase [Shewanella baltica OS678]
          Length = 350

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLFCG GG+   L++      ++     +I P     Y+ N     I   +A++  
Sbjct: 3  IRAIDLFCGAGGLTHGLQRA----GIDVIAGYDIEPQCRYAYEKNNKAVFIQESVAELTE 58

Query: 62 QDIP----DHDV-LLAG-FPCQPFS 80
           +      D D+ ++AG  PCQPFS
Sbjct: 59 DEFSHYYGDADIRVMAGCAPCQPFS 83


>gi|71899200|ref|ZP_00681363.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
 gi|71731058|gb|EAO33126.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
          Length = 387

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          DLFCG+GG+   L +      +      +I+P     ++AN     +  D+A++K   + 
Sbjct: 18 DLFCGVGGLTHGLARG----GISVAAGIDIDPNCQFPFEANNAALFLECDVARLKAAAVK 73

Query: 66 DH----DV-LLAG-FPCQPFS 80
                D+ LLAG  PCQPFS
Sbjct: 74 GFYQAADITLLAGCAPCQPFS 94


>gi|300791025|ref|YP_003771316.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299800539|gb|ADJ50914.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 435

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 3   KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           ++ +L  G GG  L LE+  F HR      + E++  +  T Q N P  +          
Sbjct: 11  EVVELCAGAGGQALGLERAGFKHR-----LAVELDSNAFTTLQTNIPGKIEINEEEREIV 65

Query: 54  --GDIAKIKTQDIPDHD---VLLAGFPCQPFSQAG 83
             GD+A     +  DH    +L  G PC PF+ AG
Sbjct: 66  QQGDVADPAVFNPEDHREVALLAGGVPCPPFTIAG 100


>gi|330802352|ref|XP_003289182.1| hypothetical protein DICPUDRAFT_153508 [Dictyostelium purpureum]
 gi|325080758|gb|EGC34300.1| hypothetical protein DICPUDRAFT_153508 [Dictyostelium purpureum]
          Length = 378

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + + GIGG+   L+++      E   S +IN  ++  Y+  F       +I  +  
Sbjct: 18 LRVLEFYSGIGGMHYGLKES--GVKFEVVQSFDINTNAILNYKYTFNENTSQKNIESLTV 75

Query: 62 QDIPD--HDVLLAGFPCQPFSQAG 83
          ++I +   +  L   PCQPF+++G
Sbjct: 76 EEIDNFKSNAWLMSPPCQPFTRSG 99


>gi|71893964|ref|YP_279410.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           J]
 gi|71852091|gb|AAZ44699.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           J]
          Length = 329

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIF--GDI--A 57
           DLF G GG+   L             S EI   +V+TY  NF     N  +F   DI  +
Sbjct: 19  DLFSGAGGLSCGLVMA----GFLPLASLEIMKQAVETYAYNFKKRSKNKELFKLSDIRDS 74

Query: 58  KIKTQDIPDH------DVLLAGFPCQPFSQAG 83
           KIK++   DH      D++  GFPCQ FS AG
Sbjct: 75  KIKSE-FYDHFKDQELDLIAGGFPCQGFSMAG 105


>gi|312200624|ref|YP_004020685.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
 gi|311231960|gb|ADP84815.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
          Length = 391

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          +++  L  GIG + L LE+      +      E +P+  +    ++P      D+     
Sbjct: 1  MRVLSLCSGIGALDLGLERA----GLTTVGQVERDPFCQRVLARHWPEVPRHDDVLTTTE 56

Query: 61 ----TQDIPDHDVLLAGFPCQPFSQAG 83
                D P  DV+  GFPCQP S AG
Sbjct: 57 WWTAQPDRPTVDVVAGGFPCQPASVAG 83


>gi|325279948|ref|YP_004252490.1| DNA-cytosine methyltransferase [Odoribacter splanchnicus DSM
          20712]
 gi|324311757|gb|ADY32310.1| DNA-cytosine methyltransferase [Odoribacter splanchnicus DSM
          20712]
          Length = 359

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L+  D FCG GG+   L Q      VE     ++      TY+AN P T   G DI K++
Sbjct: 4  LRAIDFFCGGGGMTCGLRQA----GVEVMAGVDLAEECESTYEANNPGTKFVGADITKLE 59

Query: 61 TQDIP---------DHDVLLAGFPCQPFS 80
                        D+ VL+   PCQ +S
Sbjct: 60 ENYFEKQFGLIRNDDNLVLVGCSPCQYYS 88


>gi|261838928|gb|ACX98693.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 52]
          Length = 355

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE        +     + +  ++ T++ N  N + + GDI +   
Sbjct: 4  KILDLFCGAGGFSTGLECL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK     + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|313677760|ref|YP_004055756.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944458|gb|ADR23648.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIA 57
          + DLFCG GG    L Q F   +       +    +++T+  N  N+      L+  D  
Sbjct: 7  VIDLFCGCGG----LSQGFIEADYNVILGIDHWKDAIETFNYNHKNSKGIVADLLNLDPQ 62

Query: 58 KIKTQ-DIPDHDVLLAGFPCQPFSQAG 83
          +IKT+  I + D+++ G PCQ FS AG
Sbjct: 63 EIKTRYAIENVDLIVGGPPCQGFSIAG 89


>gi|28198487|ref|NP_778801.1| site-specific DNA-methyltransferase [Xylella fastidiosa
          Temecula1]
 gi|182681164|ref|YP_001829324.1| DNA-cytosine methyltransferase [Xylella fastidiosa M23]
 gi|28056571|gb|AAO28450.1| site-specific DNA-methyltransferase [Xylella fastidiosa
          Temecula1]
 gi|182631274|gb|ACB92050.1| DNA-cytosine methyltransferase [Xylella fastidiosa M23]
 gi|307579611|gb|ADN63580.1| DNA-cytosine methyltransferase [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 355

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
          DLFCG+GG+   L +      +      +I+P     ++AN     +  D+A++K   + 
Sbjct: 18 DLFCGVGGLTHGLARG----GISVAAGIDIDPNCQFPFEANNAALFLECDVARLKAAAVR 73

Query: 65 -----PDHDVLLAGFPCQPFS 80
                D  +L    PCQPFS
Sbjct: 74 GFYQAADITLLAGCAPCQPFS 94


>gi|317488614|ref|ZP_07947157.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|316912266|gb|EFV33832.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 308

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
          ++  DLFCG GG    L   F     E     +    ++ TY AN P+    L  GD++ 
Sbjct: 7  VQTIDLFCGCGG----LTAGFRAAGFENLVGFDNWQAALDTYSANNPDQGEMLDLGDLSA 62

Query: 59 I--KTQDIPDHDVLLAGFPCQPFSQAG 83
             +  +    D ++ G PCQ FS AG
Sbjct: 63 SLERLAEYKGIDGVIGGPPCQDFSSAG 89


>gi|156050777|ref|XP_001591350.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980]
 gi|154692376|gb|EDN92114.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1392

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 25/95 (26%)

Query: 6   DLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAK 58
           DLFCG G     LE+     N   V+ F ++      V+TY  N  +     + FG +  
Sbjct: 657 DLFCGGGNFGRGLEEGGAVHNKWAVDLFSAA------VQTYSTNLKDPEGTDMFFGSVND 710

Query: 59  IKTQ---------DIP---DHDVLLAGFPCQPFSQ 81
           +  Q          IP   D DV+LAG PCQ FS+
Sbjct: 711 LLVQAFEGNPQKFRIPSPGDVDVILAGSPCQGFSR 745


>gi|3913215|sp|Q44258|CBAC_COMTE RecName: Full=1-carboxy-3-chloro-3,4-dihydroxycyclo
          hexa-1,5-diene dehydrogenase
 gi|2073552|gb|AAC45718.1| 1-carboxy-3-chloro-3,4-dihydroxycyclohexa-1,5-diene dehydrogenase
          [Conidiobolus coronatus]
          Length = 397

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQ 77
          R V+   +S+ +P S++ ++A+FP   + GDI  +     PD +V+  G P Q
Sbjct: 23 RRVQLVAASDTDPLSLRQFKADFPAAAVHGDIESLCKN--PDVEVVYIGTPHQ 73


>gi|310657622|ref|YP_003935343.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
          519]
 gi|308824400|emb|CBH20438.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 344

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 13/90 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          + + DLFCG GG+    EQ  FN          + +  +++T++ N  N+  I GDI +I
Sbjct: 1  MNLIDLFCGCGGLSYGFEQAGFN-----VLLGIDNDKAALETFKLNHKNSKTICGDIREI 55

Query: 60 KTQDIPDH------DVLLAGFPCQPFSQAG 83
             +I +       D+++ G PCQ  S +G
Sbjct: 56 TFDEINNVIGNKKIDLIVGGPPCQGMSLSG 85


>gi|72255517|ref|NP_001026813.1| tRNA (cytosine-5-)-methyltransferase [Rattus norvegicus]
 gi|115311703|sp|Q4G073|TRDMT_RAT RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2
 gi|71051331|gb|AAH98700.1| TRNA aspartic acid methyltransferase 1 [Rattus norvegicus]
 gi|149021112|gb|EDL78719.1| DNA methyltransferase 2 [Rattus norvegicus]
          Length = 391

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+   L ++    +V    + +++  + + Y+ NFP+T L+   I  I 
Sbjct: 4  LRVLELYSGIGGMHHALRESRVPAHVVA--AIDVSTVANEVYKHNFPHTHLLAKTIEGIS 61

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
           +  D    +++L   PCQPF++ G
Sbjct: 62 LEEFDKLSFNMILMSPPCQPFTRIG 86


>gi|123965679|ref|YP_001010760.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9515]
 gi|123200045|gb|ABM71653.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9515]
          Length = 689

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QD 63
           DLF G GG+ L L     HR N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 56  DLFSGAGGLSLGL-----HRANFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVVNE 110

Query: 64  IPDH-------DVLLAGFPCQPFSQ 81
           I D         ++  G PCQPFS+
Sbjct: 111 IADKLNECGEISLIAGGPPCQPFSR 135


>gi|330465519|ref|YP_004403262.1| DNA-cytosine methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808490|gb|AEB42662.1| DNA-cytosine methyltransferase [Verrucosispora maris AB-18-032]
          Length = 392

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKIK 60
          + F GIG +RL LE        +  +S++I P   + Y  +F      +T   GDIA ++
Sbjct: 20 EFFAGIGLVRLGLEDA----GFKVIWSNDIEPDKKEMYVRHFNDPEGTHTYKRGDIADVR 75

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
             + D   +  A FPC   S AG
Sbjct: 76 GPQMVDELSLAWASFPCTDLSLAG 99


>gi|94990422|ref|YP_598522.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94543930|gb|ABF33978.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10270]
          Length = 110

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFP 75
            QD        D++  GF 
Sbjct: 60 TDQDFRQLRGQVDIICGGFS 79


>gi|309789605|ref|ZP_07684186.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides
          DG6]
 gi|308228341|gb|EFO81988.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides
          DG6]
          Length = 342

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 2  LKITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + + DLF G GG+ L  E Q       E       +P + +TY  N  +     +++ I 
Sbjct: 21 ISVLDLFAGCGGLALGFEAQGLKTHGFE------KDPDAAQTYCNNLGSPCEHVELS-ID 73

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T   P  DV++ G PCQPFS  G
Sbjct: 74 TV-YPQADVVIGGPPCQPFSVGG 95


>gi|330940085|gb|EGH43270.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 502

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQDIPDHDVLLAGFPCQPFSQA 82
          +E  + +EI P+       ++P T   GD+ K    +    I   DVL+ G PCQ F  A
Sbjct: 26 MEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGALVLAGKIKAPDVLVGGTPCQAFRVA 85

Query: 83 G 83
          G
Sbjct: 86 G 86


>gi|67540936|ref|XP_664242.1| hypothetical protein AN6638.2 [Aspergillus nidulans FGSC A4]
 gi|28208637|gb|AAO37378.1|AF428247_1 c5 cytosine methyltransferase DmtA [Emericella nidulans]
 gi|40738977|gb|EAA58167.1| hypothetical protein AN6638.2 [Aspergillus nidulans FGSC A4]
 gi|259480219|tpe|CBF71150.1| TPA: C5 cytosine methyltransferase DmtAPutative uncharacterized
           protein ; [Source:UniProtKB/TrEMBL;Acc:Q876R1]
           [Aspergillus nidulans FGSC A4]
          Length = 615

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT--Q 62
           D FCG GG+    E       ++  ++ ++ P++  TY+ NFPN    G DI    T  +
Sbjct: 313 DGFCGAGGVSCGAEAA----GLDIKWAFDLCPHAAATYRLNFPNVECEGSDIFSFMTSNE 368

Query: 63  DIPDHDVLLAGFPCQPFSQA 82
           +    D+     PCQ FS A
Sbjct: 369 EFMRVDISHGSPPCQTFSPA 388


>gi|320180750|gb|EFW55676.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 340

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 24/93 (25%)

Query: 2  LKITDLFCGIGGIR-------LDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          +K+ DLFCG GG+        LD+    +    EC F           Y+ N  +  I  
Sbjct: 3  VKVIDLFCGAGGLTHGLQLAGLDVVAGIDLEG-ECRFP----------YERNNKSKFIEQ 51

Query: 55 DIAKIKTQDI----PDHDV-LLAG-FPCQPFSQ 81
          DIAK+  +++     D  V +LAG  PCQPFS+
Sbjct: 52 DIAKVTKEELLRLYGDASVKVLAGCAPCQPFSK 84


>gi|301328257|ref|ZP_07221377.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|300845286|gb|EFK73046.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 341

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 24/93 (25%)

Query: 2  LKITDLFCGIGGIR-------LDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          +K+ DLFCG GG+        LD+    +    EC F           Y+ N  +  I  
Sbjct: 4  VKVIDLFCGAGGLTHGLQLAGLDVVAGIDLEG-ECRFP----------YERNNKSKFIEQ 52

Query: 55 DIAKIKTQDI----PDHDV-LLAG-FPCQPFSQ 81
          DIAK+  +++     D  V +LAG  PCQPFS+
Sbjct: 53 DIAKVTKEELLRLYGDASVKVLAGCAPCQPFSK 85


>gi|15675067|ref|NP_269241.1| putative methyl transferase [Streptococcus pyogenes M1 GAS]
 gi|71910613|ref|YP_282163.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|306827418|ref|ZP_07460705.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
 gi|13622222|gb|AAK33962.1| putative methyl transferase [Streptococcus pyogenes M1 GAS]
 gi|71853395|gb|AAZ51418.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|304430565|gb|EFM33587.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
          Length = 107

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFP 75
            QD        D++  GF 
Sbjct: 57 TDQDFRQLRGQVDIICGGFS 76


>gi|262280408|ref|ZP_06058192.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262258186|gb|EEY76920.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 354

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG    L Q      ++     + +  + +TY+ANFP    +  DI ++ 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDIAIGLDFDKKASETYEANFPEAKFYNVDIRELD 56

Query: 61 TQDIP----------DHDVLLAGFPCQPFS 80
           +++           +  +L+A  PCQPFS
Sbjct: 57 EKELAAAFKDINQKEEPLLLVACAPCQPFS 86


>gi|94994344|ref|YP_602442.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|94547852|gb|ABF37898.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10750]
          Length = 119

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFP 75
            QD        D++  GF 
Sbjct: 60 TDQDFRQLRGQVDIICGGFS 79


>gi|313665138|ref|YP_004047009.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
 gi|312949950|gb|ADR24546.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
          Length = 342

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 34 EINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
          E +  +V+T + N PN  +IF D+ K   +D+           D+L  G PCQ FS AG
Sbjct: 33 EFDKQAVETLKFNRPNWNIIFEDVQKASQRDLKKEFNLKERELDLLSGGAPCQSFSYAG 91


>gi|325955715|ref|YP_004293189.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
 gi|325334695|gb|ADZ08248.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 15  RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGF 74
           R +L +  +  NV   +S+++   +  TY+ NF    +       K    P  D++L GF
Sbjct: 95  RRELSKLLDSTNV--IYSNDLFASANATYKDNFSGNYVKDTRDVRKVISFPKADLVLGGF 152

Query: 75  PCQPFSQAG 83
           PC  FS AG
Sbjct: 153 PCPGFSVAG 161


>gi|291521423|emb|CBK79716.1| DNA-methyltransferase (dcm) [Coprococcus catus GD/7]
          Length = 521

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK  DLF G GG+    E T     V    ++E N  + KTY  N        DI  I 
Sbjct: 1  MLKTIDLFAGAGGLSYGFESTGEFLIVA---AAENNKNARKTYIENHKGR---NDIRLIP 54

Query: 61 TQDIPDH------------DVLLAGFPCQPFSQA 82
            D+ D+            DV++ G PCQ FS A
Sbjct: 55 --DVRDYDFSALASEFDGIDVVIGGPPCQGFSNA 86


>gi|213969524|ref|ZP_03397660.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|301385979|ref|ZP_07234397.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302059871|ref|ZP_07251412.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
 gi|302131547|ref|ZP_07257537.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213925620|gb|EEB59179.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
          + F G G  R  L   +N     C ++++++     TY  N+  +     DI  +KT+D+
Sbjct: 16 EFFAGGGMARAGLGDEWN-----CLYANDMDHIKAATYINNWGGSHFDERDIHDVKTEDL 70

Query: 65 -PDHDVLLAGFPCQPFSQAG 83
            + D+  A FPCQ  S AG
Sbjct: 71 KSNSDLAWASFPCQDLSVAG 90


>gi|303236368|ref|ZP_07322958.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens
          FB035-09AN]
 gi|302483426|gb|EFL46431.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens
          FB035-09AN]
          Length = 357

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I DLFCG GG    L + F     +     +I   ++ T++ N    +    D++  ++ 
Sbjct: 9  IIDLFCGCGG----LSKGFEEAGYKTLLGVDIEQNALNTFEKNHNGAVGLNLDLSASESF 64

Query: 63 DIPDH-------DVLLAGFPCQPFSQAG 83
          D  D        DV++ G PCQ FS  G
Sbjct: 65 DKIDEVVKGRAIDVIIGGPPCQGFSLTG 92


>gi|210134246|ref|YP_002300685.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132214|gb|ACJ07205.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 355

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AKI 59
          KI DLFCG GG    LE        +     + +  ++ T++ N  N + + GDI  A I
Sbjct: 4  KILDLFCGAGGFSAGLECL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQAAI 60

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
          K + I      + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAQKLEINMIIGGPPCQGFSNKG 89


>gi|329113622|ref|ZP_08242401.1| Modification methylase HpaII [Acetobacter pomorum DM001]
 gi|326697068|gb|EGE48730.1| Modification methylase HpaII [Acetobacter pomorum DM001]
          Length = 389

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
          M    + F G G  R  L   +      C F+++ +     +YQAN+     L  GD+  
Sbjct: 8  MPSFYEFFAGGGMARAGLGDGWT-----CLFANDFDHKKGLSYQANWGTGGELRVGDVND 62

Query: 59 IKTQDIPD-HDVLLAGFPCQPFS 80
          ++ +D+P   D++   FPCQ  S
Sbjct: 63 VRVEDLPGVADLVWGSFPCQDLS 85


>gi|462658|sp|P34878|MTSB_LACLC RecName: Full=Modification methylase ScrFIB; Short=M.ScrFI-B;
           Short=M.ScrFIB; AltName: Full=Cytosine-specific
           methyltransferase ScrFIB
 gi|149495|gb|AAA16838.1| methyl-5-cytosine methylase [Lactococcus lactis]
 gi|2327032|gb|AAB66694.1| 5-methyl-cytosine-methyltransferase [Lactococcus lactis subsp.
           cremoris]
 gi|739995|prf||2004282A methyl-5-cytosine methyltransferase
          Length = 360

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 53  FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           FGDI  I  + +PD D     FPCQ  S AG
Sbjct: 104 FGDIRSIDPKKLPDFDFFTYSFPCQDISVAG 134


>gi|71274663|ref|ZP_00650951.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71899625|ref|ZP_00681779.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
 gi|71164395|gb|EAO14109.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71730577|gb|EAO32654.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
          Length = 329

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE   FNH  +      E+ P +  T + N P   +I  D+ +     
Sbjct: 19 EMCAGAGGQALGLEMVGFNHAAL-----VELEPTACATLRLNRPAWNVIEDDLRRFDGLP 73

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PC PFS+AG
Sbjct: 74 YQGIDLVAGGVPCPPFSKAG 93


>gi|241204300|ref|YP_002975396.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858190|gb|ACS55857.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 662

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + +L  G GG+ L LE    H  +  F   E + ++  T + N P   ++ GDI ++ 
Sbjct: 296 LNVIELCAGAGGMSLGLEDAGFH-PLALF---EFDKHAAATLRLNRPLWNVVEGDIRQVD 351

Query: 61  TQDIPDH--DVLLAGFPCQPFSQAG 83
                    D+L+ G PCQPFS  G
Sbjct: 352 FTPYRSAGVDLLVGGLPCQPFSIDG 376


>gi|34014717|dbj|BAC81824.1| methylase [Acidocella facilis]
          Length = 443

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 19/90 (21%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---------LIFGDI 56
          DLF G GG+ L  EQ       +   + E++P     ++ NFP T         L   +I
Sbjct: 7  DLFAGAGGLSLGFEQA----GFDVVAAVEVDPVHCGVHKFNFPQTAVVPRSVVGLTAAEI 62

Query: 57 ---AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             A I  + +   D +  G PCQ FS  G
Sbjct: 63 RLAAGIGNRPV---DCVFGGPPCQGFSMIG 89


>gi|283456339|ref|YP_003360903.1| cytosine methyl transferase [Bifidobacterium dentium Bd1]
 gi|283102973|gb|ADB10079.1| dcm Cytosine methyl transferase [Bifidobacterium dentium Bd1]
          Length = 509

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-- 64
            F G GG+ L +EQ      + C    E    +  +   N+P+  + GDI ++    +  
Sbjct: 138 FFTGAGGLDLGMEQAGISARLLCENMRE----ARMSIGVNWPDKALVGDITELDAVTVRR 193

Query: 65  -------PDHDVLLAGFPCQPFSQAG 83
                   + DV+  G PCQ FS AG
Sbjct: 194 MAGLDEDTEIDVMFGGPPCQAFSTAG 219


>gi|171742574|ref|ZP_02918381.1| hypothetical protein BIFDEN_01687 [Bifidobacterium dentium ATCC
           27678]
 gi|171278188|gb|EDT45849.1| hypothetical protein BIFDEN_01687 [Bifidobacterium dentium ATCC
           27678]
          Length = 481

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 13/86 (15%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI-- 64
            F G GG+ L +EQ      + C    E    +  +   N+P+  + GDI ++    +  
Sbjct: 110 FFTGAGGLDLGMEQAGISARLLCENMRE----ARMSIGVNWPDKALVGDITELDAVTVRR 165

Query: 65  -------PDHDVLLAGFPCQPFSQAG 83
                   + DV+  G PCQ FS AG
Sbjct: 166 MAGLDEDTEIDVMFGGPPCQAFSTAG 191


>gi|209525305|ref|ZP_03273847.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494320|gb|EDZ94633.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 342

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 16/87 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L + DLF G GG  L     F     E     E+   +  TY  N        DI   +T
Sbjct: 25  LVVLDLFAGCGGFSLG----FKAAGFETI-GYEMLADAAATYTRNLQ------DICYCQT 73

Query: 62  ----QDIPDH-DVLLAGFPCQPFSQAG 83
               QD+ +H DV++ G PCQPFS  G
Sbjct: 74  LEIGQDLCNHPDVIIGGPPCQPFSVGG 100


>gi|172037464|ref|YP_001803965.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171698918|gb|ACB51899.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 430

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 38/121 (31%)

Query: 1   MLKITDLFCGIGGIRLDLEQTF--------------------------NHRNVECFFSSE 34
           M ++  LF G GG+ L  E  F                          N  N +  F+++
Sbjct: 1   MKRLLSLFSGCGGMDLGFEGNFWIHEDCINETIHPNWIVKKKERWVLLNKTNFDIVFAND 60

Query: 35  INPYSVKTYQANFPNTLI--------FGDIAKIKTQ---DIPDH-DVLLAGFPCQPFSQA 82
           I  Y+   + + F   ++          D+ K+      D P++ D++  GFPCQ FS +
Sbjct: 61  IEKYAYNAWMSYFGKKILGKIFHLNSLVDLIKLSETGNFDFPNNIDIITGGFPCQDFSVS 120

Query: 83  G 83
           G
Sbjct: 121 G 121


>gi|148988375|ref|ZP_01819822.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926056|gb|EDK77130.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
          Length = 351

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 4  ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK- 60
          I DLF G GG+    E   FN          + +  +++T+Q N  N+ I  GDIA I  
Sbjct: 6  IVDLFSGAGGLSYGFEMAGFN-----VLLGIDNDEKALETFQKNHQNSEILCGDIANISY 60

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
           +DI         D+++ G PCQ  S +G
Sbjct: 61 EEDIKPIIGEQKIDIIVGGPPCQGMSLSG 89


>gi|62946466|ref|YP_227670.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17134568|dbj|BAB77127.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 253

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 1  MLKITDLFCGIGGI------RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          M  I  LF GIGG+         L   F    V+ F   EI+PYS    +   P T I  
Sbjct: 1  MKSILSLFSGIGGLCHHGIAAAGLSHKFQ---VKQFV--EISPYSQSRLRHEQPQTPIHS 55

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI           D++  G PCQ  S AG
Sbjct: 56 DITTYHCHR-GQFDIVAGGLPCQGTSNAG 83


>gi|289167785|ref|YP_003446054.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907352|emb|CBJ22189.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 351

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 4  ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK- 60
          I DLF G GG+    E   FN          + +  +++T+Q N  N+ I  GDIA I  
Sbjct: 6  IVDLFSGAGGLSYGFEMAGFN-----VLLGIDNDEKALETFQKNHQNSEILCGDIANISY 60

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
           +DI         D+++ G PCQ  S +G
Sbjct: 61 EEDIKPIIGEQKIDIIVGGPPCQGMSLSG 89


>gi|332023953|gb|EGI64171.1| DNA (cytosine-5)-methyltransferase PliMCI [Acromyrmex echinatior]
          Length = 1449

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L++ D+F G GG+   + Q       E  ++ E    +   Y+ N P T++F        
Sbjct: 942  LRMLDIFAGCGGLSEGMHQA---GVAESLWAIEKESSAANAYRLNNPKTMVFSEDCNKLL 998

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD      Q +P   D ++L  G PCQ FS
Sbjct: 999  QRVMDGDRVDNNGQKLPQKGDVELLCGGPPCQGFS 1033


>gi|266620546|ref|ZP_06113481.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288867840|gb|EFD00139.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 521

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK  DLF G GG+    E T     V    ++E N  + KTY  N         I  ++
Sbjct: 1  MLKTIDLFAGAGGLSYGFESTGEFLIVA---AAENNKNARKTYIENHKGRNDIRMIPDVR 57

Query: 61 TQDIPDH-------DVLLAGFPCQPFSQA 82
            D           DV++ G PCQ FS A
Sbjct: 58 GYDFSALASEFDGIDVVIGGPPCQGFSNA 86


>gi|148555450|ref|YP_001263032.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
 gi|148500640|gb|ABQ68894.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
          Length = 400

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +   F G GG+ L  E +  +++V  F   EIN    KT + N P   +FG      D
Sbjct: 72  IPLVSFFTGCGGMDLGFE-SVGYQHVAAF---EINELFCKTLRRNRPEWKVFGPPVHSGD 127

Query: 56  I-------AKIKTQ-DIPDHDVLLAGFPCQPFSQAG 83
           +       A ++T    P   V   G PCQPFS A 
Sbjct: 128 VSMFENVAAALRTVIKAPFEGVFAGGPPCQPFSIAA 163


>gi|321469202|gb|EFX80183.1| hypothetical protein DAPPUDRAFT_346987 [Daphnia pulex]
          Length = 1400

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 18/94 (19%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD----IA 57
            LK  D+F G GG+   L Q+      + +++ E  P + + ++ N P+  +F D    I 
Sbjct: 926  LKTLDIFAGCGGLSEGLHQS---GVAKTYWAIECEPTAAQAFRLNNPDAAVFTDDCNTIL 982

Query: 58   KIKT--------QDIPDHD---VLLAGFPCQPFS 80
            K+          Q +P  D   +L  G PCQ FS
Sbjct: 983  KMAIDGQLEQNGQVLPPKDGVELLCGGPPCQGFS 1016


>gi|153932387|ref|YP_001385110.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153937602|ref|YP_001388579.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152928431|gb|ABS33931.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152933516|gb|ABS39015.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
          Length = 350

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY---SVKTYQANF----PNTLIF 53
          + ++ +LFCG GG+    +      N         N Y   +  TY  N     P ++I 
Sbjct: 2  IFQLGELFCGPGGLGYGAKTAEIKNNKYKIVHKWANDYDRDTCDTYIHNICPDDPESVIC 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           D+ K+    +   D L  GFPC  FS  G
Sbjct: 62 QDVRKLDIDSLESIDALAFGFPCNDFSVVG 91


>gi|296392544|ref|YP_003657428.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296179691|gb|ADG96597.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 314

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLF G GG+ L  E        E   + +  P ++  Y+ NF +  +  D+  +   
Sbjct: 11 RLLDLFAGCGGLSLGFESA----GFEVALAVDNWPEALAVYRRNFRHRAVELDLGDVDLA 66

Query: 63 D------IPDHDVLLAGFPCQPFSQAG 83
                   + D ++ G PCQ FS AG
Sbjct: 67 SSALRECAAEVDGIIGGPPCQDFSSAG 93


>gi|281416239|ref|YP_003347588.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209504|gb|ACZ64045.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209572|gb|ACZ64112.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3B]
          Length = 317

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M++I +LF GIG  R  L      H++++     E N  +V++Y A F   + +   + +
Sbjct: 1  MIQILELFGGIGAPRKALINLGIPHKSIDYV---EWNEKAVRSYNAMFEKEIKYQPQSVV 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
               PD  +L+ G PCQ FS  G
Sbjct: 58 GWNLKPD--ILVHGSPCQDFSIGG 79


>gi|229490017|ref|ZP_04383870.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
 gi|229323118|gb|EEN88886.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
          Length = 431

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 34  EINPYSVKTYQANFPNTLIFGD----IAKIKTQDI---PDHDVLLAGFPCQPFSQAG 83
           E+ P +  T+  NFP     G+    I + + +D+    D DVL  G PCQ FS AG
Sbjct: 119 EVVPEARATFDRNFPGARCLGEDIRAIDEARVKDLLAQVDIDVLAGGPPCQGFSLAG 175


>gi|226307434|ref|YP_002767394.1| modification methylase [Rhodococcus erythropolis PR4]
 gi|226186551|dbj|BAH34655.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 444

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 34  EINPYSVKTYQANFPNTLIFGD----IAKIKTQDI---PDHDVLLAGFPCQPFSQAG 83
           E+ P +  T+  NFP     G+    I + + +D+    D DVL  G PCQ FS AG
Sbjct: 132 EVVPEARATFDRNFPGARCLGEDIRAIDEARVKDLLAQVDIDVLAGGPPCQGFSLAG 188


>gi|312601558|gb|ADQ90813.1| Cytosine-specific methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 406

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIF--GDI--A 57
           DLF G  G+   L             S EI   +V+TY  NF     N  +F  GDI  +
Sbjct: 96  DLFSGAAGLSCGLVMA----GFLPLASLEIMKQAVETYAYNFKKRSKNKELFKLGDIRDS 151

Query: 58  KIKTQ---DIPDH--DVLLAGFPCQPFSQAG 83
           KIK++      D   D++  GFPCQ FS AG
Sbjct: 152 KIKSEFYNHFKDQELDLIAGGFPCQGFSMAG 182


>gi|182677759|ref|YP_001831905.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633642|gb|ACB94416.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 488

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 32/103 (31%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------------I 52
           ++FCGIGG    L + F+    E  F++++ P ++  +  NF  T              +
Sbjct: 38  EVFCGIGG----LSRGFHSLGFEPKFANDVWPLALYNFLMNFDATYAATSGTHHGDILGL 93

Query: 53  FGDIAKIKTQDI---------------PDHDVLLAGFPCQPFS 80
            G +  I   DI                + DVLL G PCQ FS
Sbjct: 94  VGSVEDISISDILPKISSSSGEGSLKVGEIDVLLGGPPCQGFS 136


>gi|116203489|ref|XP_001227555.1| hypothetical protein CHGG_09628 [Chaetomium globosum CBS 148.51]
 gi|88175756|gb|EAQ83224.1| hypothetical protein CHGG_09628 [Chaetomium globosum CBS 148.51]
          Length = 2354

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 17/93 (18%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------FGD 55
            L+  DLFCG G     LE+      VE  ++++I   ++ TY AN P++         GD
Sbjct: 1662 LRGMDLFCGSGNFGRGLEEG---GAVEVKWANDIWDRAIHTYMANSPDSTAKPFLGSVGD 1718

Query: 56   IAKIKTQ-----DIP---DHDVLLAGFPCQPFS 80
            + ++  +     ++P   D D + AG PC  FS
Sbjct: 1719 LLQLALEGKYADNVPRPGDVDFISAGSPCPGFS 1751


>gi|145631945|ref|ZP_01787699.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae R3021]
 gi|145639068|ref|ZP_01794676.1| ABC transporter ATPase component [Haemophilus influenzae PittII]
 gi|144982396|gb|EDJ89970.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae R3021]
 gi|145272040|gb|EDK11949.1| ABC transporter ATPase component [Haemophilus influenzae PittII]
          Length = 79

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLIF 53
          L   DLF G GG+ L     F++       S E+ P   +TY+ NFP+        T + 
Sbjct: 3  LTYLDLFSGAGGLSLG----FDYAEFRQLLSIELEPVYCETYRVNFPHHRVLQQDLTQLS 58

Query: 54 GDIAKIKTQDIPDHDV 69
           + A +   DIP+  +
Sbjct: 59 NEQASLYRSDIPNRGI 74


>gi|15644682|ref|NP_206852.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 26695]
 gi|2313124|gb|AAD07117.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 26695]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE        +     + +  ++ T++ N  N + + GDI +   
Sbjct: 4  KILDLFCGAGGFSAGLECL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK     + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|238018550|ref|ZP_04598976.1| hypothetical protein VEIDISOL_00377 [Veillonella dispar ATCC 17748]
 gi|237865021|gb|EEP66311.1| hypothetical protein VEIDISOL_00377 [Veillonella dispar ATCC 17748]
          Length = 452

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++KI  +F G+GG  + LE + +    +  +S++  P S KT  A       F D+  I 
Sbjct: 22  VMKIFSMFDGVGGFIVGLENS-SKEVFQTLYSNQYEP-SRKTQDAYEVGLYRFPDMEHIP 79

Query: 61  TQD--IPDH----------DVLLAGFPCQPFSQA 82
           T    IP+           D+++ GFPCQ +S A
Sbjct: 80  TDVALIPNEKFGEMKSNGVDMIVGGFPCQDYSVA 113


>gi|196048067|ref|ZP_03115245.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
 gi|196021323|gb|EDX60052.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
          Length = 427

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 34 EINPYSVKTYQANFPNTLIFGDIAKIKTQD----IPDHD--VLLAGFPCQPFS 80
          EIN  + KTY+ N P+T+++    K  T D    I  ++  +LL G PCQ FS
Sbjct: 34 EINSDACKTYKVNHPDTIVWNRDIKTVTGDEILSITKNNPIILLGGSPCQSFS 86


>gi|241832196|ref|XP_002414890.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
 gi|215509102|gb|EEC18555.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
          Length = 361

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+                 + ++N  +  TY  NFP T L+  ++  + 
Sbjct: 19 LRVLELYSGIGGMHFACPPD----KTRVVAAVDVNTTANATYAFNFPETRLLQRNVQSLT 74

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
           +  D    DVL    PCQPF++ G
Sbjct: 75 ARELDALRPDVLTMSPPCQPFTRQG 99


>gi|127453|sp|P25267|MTG1_HERAU RecName: Full=Modification methylase HgiGI; Short=M.HgiGI;
          AltName: Full=Cytosine-specific methyltransferase HgiGI
 gi|43475|emb|CAA38947.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 126

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L     F     E   + +    ++ TYQ NF + +   D+A++  
Sbjct: 1  MKTIDLFAGCGGMSLG----FMQAGFEIVAAVDNWRPAITTYQQNFIHPIHELDLAEVDE 56

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
                    ++++ G PCQ FS AG
Sbjct: 57 AISLIKTYSPELIIGGPPCQDFSSAG 82


>gi|269129048|ref|YP_003302418.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM
          43183]
 gi|268314006|gb|ACZ00381.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM
          43183]
          Length = 418

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          L + ++  G GG  L LE   F H       + E++  +  T + N P   I  GD A +
Sbjct: 4  LNVVEICAGAGGQSLGLELAGFKHA-----LAVELDANACNTLRLNRPEWKIAEGDAASL 58

Query: 60 KTQDIPDH---DVLLAGFPCQPFSQAG 83
             +  D+   D+L  G PC PF+ AG
Sbjct: 59 DVWNPADYQEIDLLAGGVPCPPFTIAG 85


>gi|254039141|ref|ZP_04873191.1| DNA-cytosine methyltransferase [Escherichia sp. 1_1_43]
 gi|226838577|gb|EEH70606.1| DNA-cytosine methyltransferase [Escherichia sp. 1_1_43]
          Length = 349

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+ DLFCG GG+   L+++     +      +I+      Y+ N  +  +   +  I+
Sbjct: 1  MIKVVDLFCGAGGLTHGLQKS----GLNVVAGYDIDAACRFAYETNNKSLFVQKSVTDIE 56

Query: 61 TQDIPDH------DVLLAGFPCQPFS 80
            ++  +       VL    PCQPFS
Sbjct: 57 DGELVKYFEGAKVRVLAGCAPCQPFS 82


>gi|225019628|ref|ZP_03708820.1| hypothetical protein CLOSTMETH_03581 [Clostridium methylpentosum
          DSM 5476]
 gi|224947595|gb|EEG28804.1| hypothetical protein CLOSTMETH_03581 [Clostridium methylpentosum
          DSM 5476]
          Length = 390

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF G GG+ +     F         + E    +   Y+ NF + +   D++ ++
Sbjct: 1  MKKIVDLFAGCGGLSMG----FQDAGFNIVGAFEFWDIAADCYEKNFEHPVYRMDLSDVE 56

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
                 +   ++++ G PCQ FS AG
Sbjct: 57 KSVEKIKLLKPEIIIGGPPCQDFSHAG 83


>gi|251773224|gb|EES53775.1| Site-specific DNA methylase-like protein [Leptospirillum
          ferrodiazotrophum]
          Length = 154

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LEQ  F+H  +      E++ ++  + + N P   +I G++   K   
Sbjct: 6  EICAGAGGQALGLEQAGFDHSAL-----VELDHHACASLRLNRPGWNVIEGNLQSFKGTP 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+ G
Sbjct: 61 FKGIDLLAGGVPCPPFSKDG 80


>gi|323139578|ref|ZP_08074623.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322395197|gb|EFX97753.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 381

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 29 CFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFS 80
          C F+++ +     +YQAN+     L+ GD+ K+    +P   D++   FPCQ  S
Sbjct: 24 CQFANDFDHKKALSYQANWGTGGELLVGDVRKVTASQLPGCADLIWGSFPCQDLS 78


>gi|29832079|ref|NP_826713.1| type II restriction-modification system DNA cytosine-specific
           methylase [Streptomyces avermitilis MA-4680]
 gi|29609197|dbj|BAC73248.1| putative type II restriction-modification system DNA
           cytosine-specific methylase [Streptomyces avermitilis
           MA-4680]
          Length = 515

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           L +TDLFCG GG             V+  F++     ++ ++QAN P+      DI++++
Sbjct: 49  LSLTDLFCGAGGSSTGAAMV---PGVQVAFAANHARDAIDSHQANHPDADHDLADISEVE 105

Query: 61  TQDIPDHDVLLAGFPCQPFSQA 82
               P  D+L A   C   S A
Sbjct: 106 PTRYPRTDLLWASPACTAHSLA 127


>gi|315029938|gb|EFT41870.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX4000]
          Length = 317

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M++I +LF GIG  R  L      H++++     E N  +V++Y A F   + +   + +
Sbjct: 1  MIQILELFGGIGAPRKALINLGIPHKSIDYV---EWNEKAVRSYNAMFEKEIKYQPQSVV 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
               PD  +L+ G PCQ FS  G
Sbjct: 58 GWNLKPD--ILVHGSPCQDFSIGG 79


>gi|302873652|ref|YP_003842285.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686624|ref|ZP_07629070.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576509|gb|ADL50521.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 445

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 29/103 (28%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---------GDI 56
           DLFCG GG+   L Q   H      FSS+IN    +TY        +          GD+
Sbjct: 6   DLFCGAGGMSEGLIQAGFH----ILFSSDINEDVQRTYMNRHEQLGLLQGVNTHYHRGDV 61

Query: 57  AKIKTQ---------------DIP-DHDVLLAGFPCQPFSQAG 83
            ++  +                +P D D +  G PCQ FS+AG
Sbjct: 62  RELTGEFIRNSIQNLAIFAEGSVPEDIDAIFGGPPCQGFSRAG 104


>gi|310828705|ref|YP_003961062.1| hypothetical protein ELI_3130 [Eubacterium limosum KIST612]
 gi|308740439|gb|ADO38099.1| Phage-related protein [Eubacterium limosum KIST612]
          Length = 262

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGGI L  E        +C F+     +  K  + ++P+   + D+  +  +    
Sbjct: 11 LFTGIGGIDLAAEWAGFETVGQCEFAD----FPTKVLKKHWPDVPRWRDVKDVTRESFEQ 66

Query: 67 H------DVLLAGFPCQPFSQAG 83
                 D++  GFPCQP S  G
Sbjct: 67 WTGLQTVDLISGGFPCQPHSVIG 89


>gi|297570127|ref|YP_003691471.1| DNA-cytosine methyltransferase [Desulfurivibrio alkaliphilus
          AHT2]
 gi|296926042|gb|ADH86852.1| DNA-cytosine methyltransferase [Desulfurivibrio alkaliphilus
          AHT2]
          Length = 363

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLFCG+G     L     +  ++     +++      ++ N   +    D+ K+   
Sbjct: 18 EVVDLFCGVGA----LSHGLRNAGLKILAGYDVDARCKYAFETNNSASFFSRDVGKLTAA 73

Query: 63 DIPDH------DVLLAGFPCQPFS 80
          ++  H       VL    PCQPFS
Sbjct: 74 ELKSHFSGNVPSVLAGCAPCQPFS 97


>gi|239812977|ref|YP_002941924.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
 gi|239809042|gb|ACS26105.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
          Length = 370

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          M      F G GG+ L +++  FN        S EI     +T + NF    ++ GDI +
Sbjct: 1  MANAISFFAGAGGLDLGIKRAGFN-----ILLSVEIEETYCQTLRQNFEGLNVVCGDIME 55

Query: 59 IKTQDI------PDH---DVLLAGFPCQPFSQAG 83
             + +       +H   D+++ G PCQ FS AG
Sbjct: 56 YSRERVYQEAGLAEHEEVDLMIGGSPCQSFSTAG 89


>gi|237742048|ref|ZP_04572529.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429696|gb|EEO39908.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 440

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 32/104 (30%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ------------------ANF 47
           DLFCG GG+   + Q   H      FS+EI+  + +TY+                  A+ 
Sbjct: 14  DLFCGAGGMSEGILQAGFH----IIFSNEISKDASETYRKRHEQLGLEQGKNTWLEVADI 69

Query: 48  PNTLIFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
            N  I G   K K  ++ D         D +  G PCQ FS+AG
Sbjct: 70  KN--ITGTYIKKKISELKDFKENKNIEIDAIFGGPPCQGFSRAG 111


>gi|162461489|ref|NP_001105173.1| DNA methyl transferase4 [Zea mays]
 gi|13936240|gb|AAK40306.1| DNA methyltransferase ZMET4 [Zea mays]
 gi|194697288|gb|ACF82728.1| unknown [Zea mays]
          Length = 357

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++ + + GIGG+R  L  +      VE F   +IN  +   Y+ NF +    G+I  +  
Sbjct: 8  RVLEFYSGIGGLRYSLMASGVRAEVVEAF---DINDVANDVYEHNFGHRPCQGNIQTLTA 64

Query: 62 QDIPDHD--VLLAGFPCQPFSQAG 83
           D+  +     L   PCQP+++ G
Sbjct: 65 SDLDKYKAHAWLLSPPCQPYTRQG 88


>gi|237728463|ref|ZP_04558944.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
 gi|226909941|gb|EEH95859.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE   F+H  +      E+ P +  T + N P   +I  D+ +   + 
Sbjct: 8  EMCAGAGGQALGLEMAGFDHAAL-----VELEPAACATLRLNRPAWNVIEDDLRRFDGRP 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PC PFS+AG
Sbjct: 63 YQGIDLVAGGVPCPPFSKAG 82


>gi|163761361|ref|ZP_02168435.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
          phototrophica DFL-43]
 gi|162281356|gb|EDQ31653.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
          phototrophica DFL-43]
          Length = 376

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 18/93 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFG- 54
          LK+ DLF G GG  L   +       E  F+ E +  +  T++ N        N +++  
Sbjct: 3  LKVVDLFAGAGGFSLAAVRA----GCEIVFAVEFDKNAATTFRNNIGADHRSKNVVVYNR 58

Query: 55 DIAKIKTQDIP-------DHDVLLAGFPCQPFS 80
          DI  +    +        D D+LL G PCQ FS
Sbjct: 59 DITSLSASALAKKHFPASDCDLLLGGPPCQGFS 91


>gi|121582558|ref|YP_974087.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120608614|gb|ABM44352.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 318

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
          ++  G GG  L LE   F+H  +      E+ P +  T + N P   +I  D+ +   + 
Sbjct: 8  EMCAGAGGQALGLEMAGFDHAAL-----VELEPAACATLRLNRPAWNVIEDDLRRFDGRP 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PC PFS+AG
Sbjct: 63 YQGIDLVAGGVPCPPFSKAG 82


>gi|316934943|ref|YP_004109925.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315602657|gb|ADU45192.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 495

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 23/100 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTL----IF 53
           ++ DLF G GG+ L     F+    E   S EI+  + +++  NF     P  +    + 
Sbjct: 23  RVLDLFSGCGGLSLG----FHSAGYEIAASVEIDELAARSHAINFYKGQAPELIERQAVA 78

Query: 54  GDIAKIKTQDIPDH----------DVLLAGFPCQPFSQAG 83
            DI KI   D+             D+++ G PCQ +++ G
Sbjct: 79  RDITKIDPDDLTSDLGLGPSKLAFDLIVGGPPCQAYARVG 118


>gi|2522459|gb|AAC45757.1| M.BssHII methylase [Geobacillus stearothermophilus]
          Length = 375

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 7   LFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           LF G GG+ +  EQ T+    +E   + +    +  T +  +    +++ GDI++I+   
Sbjct: 164 LFSGAGGLDIGAEQATYKSMKIETLVTLDNWKDACDTLRGFYQGRTSVLQGDISEIQDPK 223

Query: 64  IPDH---------DVLLAGFPCQPFSQAG 83
           +  H         D++  G PCQ FSQAG
Sbjct: 224 LLWHQESQHDQIPDIVFGGPPCQAFSQAG 252


>gi|317401187|gb|EFV81833.1| hypothetical protein HMPREF0005_01193 [Achromobacter xylosoxidans
           C54]
          Length = 571

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--FGDIAKI 59
           L   DLF G GG  L  E       + C  + + N  +++T++AN     +    D+ K 
Sbjct: 41  LTFLDLFSGCGGFSLGFEAA----GLVCKAAVDSNEAAIETFKANHTKGALGLVRDLTKF 96

Query: 60  KTQDIPDH-------DVLLAGFPCQPFSQA 82
             +D+          +V++ G PCQ FS+A
Sbjct: 97  SPKDLDKLLGGSVRINVIVGGPPCQGFSKA 126


>gi|152982884|ref|YP_001351698.1| site-specific DNA methylase [Janthinobacterium sp. Marseille]
 gi|151282961|gb|ABR91371.1| Site-specific DNA methylase [Janthinobacterium sp. Marseille]
          Length = 425

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQD 63
           + F G G  R  L + +N     C F+++ +    + Y+ N+     L+  D+ KI T+ 
Sbjct: 50  EFFAGGGMARAGLGERWN-----CQFANDNSAMKGQVYRKNWHGGPELVIEDVNKITTRH 104

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
           +    D++ A FPCQ  S AG
Sbjct: 105 LSGTPDLIWASFPCQDLSLAG 125


>gi|79835466|gb|ABB52093.1| Mod [Arthrospira platensis]
 gi|291569838|dbj|BAI92110.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 345

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 2   LKITDLFCGIGGIRLDLE----QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
           L + DLF G GG  L  +    QT  +       +     Y+       +  TL  G   
Sbjct: 25  LVVLDLFAGCGGFSLGFKAAGFQTIGYE----MLADAAATYTRNLQDPCYCQTLEIG--- 77

Query: 58  KIKTQDIPDH-DVLLAGFPCQPFSQAG 83
               QD+ +H DV++ G PCQPFS  G
Sbjct: 78  ----QDLCNHPDVIIGGPPCQPFSVGG 100


>gi|319776379|ref|YP_004138867.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae F3047]
 gi|329123543|ref|ZP_08252106.1| modification methylase HphIA [Haemophilus aegyptius ATCC 11116]
 gi|317450970|emb|CBY87199.1| Putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae F3047]
 gi|327470359|gb|EGF15817.1| modification methylase HphIA [Haemophilus aegyptius ATCC 11116]
          Length = 79

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLIF 53
          L   DLF G GG+ L     F++       S E+ P   +TY+ NFP+        T + 
Sbjct: 3  LTYLDLFSGAGGLSLG----FDYAGFRQLLSIELEPVYCETYRVNFPHHRVLQQDLTQLS 58

Query: 54 GDIAKIKTQDIPDHDV 69
           + A +   DIP+  +
Sbjct: 59 NEQASLYHSDIPNRGI 74


>gi|313683546|ref|YP_004061284.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
 gi|313156406|gb|ADR35084.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFP------NTLIFG 54
          L   +L  G GG  L L    F HR        EI  Y+  T + N          +I G
Sbjct: 5  LTSIELCAGAGGQALGLHLAGFKHR-----LLIEIENYACNTLRMNNKLHALGWEEIIEG 59

Query: 55 DIAKIKTQDIPDH---DVLLAGFPCQPFSQAG 83
          D+ +    D+ ++   D++  G PC PFS+AG
Sbjct: 60 DLLEFAKSDLSNYSNIDLVAGGVPCPPFSKAG 91


>gi|295114912|emb|CBL35759.1| Site-specific DNA methylase [butyrate-producing bacterium SM4/1]
          Length = 217

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 20/95 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDI- 56
           +++ DLFCG GG+ L + +     ++R V     ++++P +++ Y+ NF P+ +I   I 
Sbjct: 65  IRVVDLFCGCGGMSLGIAEACRALDYRFVP-VLGADMDPVALQVYKENFKPHHVISEPIE 123

Query: 57  --------AKIKTQD------IPDHDVLLAGFPCQ 77
                   A+I   +      + + D+L+ G PCQ
Sbjct: 124 NQIDSEIGAEISEAEKSFINLVGEVDILIGGPPCQ 158


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--- 58
          KI DLFCG GG    LE        +     + +  ++ T++ N  N + + GDI +   
Sbjct: 4  KILDLFCGAGGFSAGLECL---EEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              IK     + ++++ G PCQ FS  G
Sbjct: 61 KEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|298492225|ref|YP_003722402.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
 gi|298234143|gb|ADI65279.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
          Length = 434

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 19/90 (21%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------------ 53
          DLF G GG+ L  EQ       +   S E++P     ++ NFP   +             
Sbjct: 10 DLFAGAGGMTLGFEQA----GFDVLVSVELDPIHCAIHKFNFPFWKVLCKSVEETTGSEI 65

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + + I  Q+I   DV+  G PCQ FS  G
Sbjct: 66 RNSSDIGNQEI---DVVFGGPPCQGFSLIG 92


>gi|158335733|ref|YP_001516905.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305974|gb|ABW27591.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
          Length = 397

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L   +LF G GG+   LE+      V+     E N  +  T   N+   L+   DI   K
Sbjct: 4  LSCLELFTGAGGLAKGLEKA----GVQHTAFVEWNKDACITLANNYSAQLVHNVDIRTFK 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D++  G PCQPFS  G
Sbjct: 60 FSQFGHVDIVSGGPPCQPFSMGG 82


>gi|226305778|ref|YP_002765738.1| hypothetical protein RER_22910 [Rhodococcus erythropolis PR4]
 gi|226184895|dbj|BAH32999.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 513

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M+ +TDLFCG GG      Q      V    ++     +++T+  N P T     D++++
Sbjct: 1  MITMTDLFCGAGGSSTGAVQV---PGVSVRMAANHWDLAIETHNTNHPTTDHACADLSQV 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +  P  D+L A   C   SQA
Sbjct: 58 DPRLFPRTDLLWASPECTNHSQA 80


>gi|70734372|ref|YP_260119.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348671|gb|AAY96277.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 394

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
          L+  + F G G  R  L   +     +C F+++++     TY  N+  +     DI ++ 
Sbjct: 5  LRFFEFFAGGGMARAGLGNQW-----QCLFANDMDRIKASTYIQNWGKDHFDSRDIREVN 59

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          ++D+  + D+  A FPCQ  S AG
Sbjct: 60 SEDLERNGDLAWASFPCQDLSVAG 83


>gi|126740127|ref|ZP_01755817.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
 gi|126718946|gb|EBA15658.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
          Length = 319

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          ML   +L  G GG  L LE+  F+H  +      EI+ +   T + N P+  ++  D+  
Sbjct: 1  MLTSVELCAGAGGQALGLEKAGFDHTAL-----VEIDKHCCATLRHNRPSWNVLEEDVRN 55

Query: 59 IK--TQDIPDHDVLLAGFPCQPFSQAG 83
           K    +    D+L  G PC PFS AG
Sbjct: 56 FKEVAGNYRGIDLLAGGLPCPPFSVAG 82


>gi|17225548|gb|AAL37469.1|AF328924_2 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 107

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK--I 59
          KI DLFCG GG    LE     +  +     + +  ++ T++ N  N + + GDI +  I
Sbjct: 4  KILDLFCGAGGFSAGLEYL---KEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTEI 60

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
          K + I      + ++++ G PCQ F   G
Sbjct: 61 KEKVIELAKKLEINMIIGGPPCQGFYNKG 89


>gi|221108933|ref|XP_002155714.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase 1,
           partial [Hydra magnipapillata]
          Length = 1138

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           L+  D+F G GG+   L+Q      V   ++ E  P + + Y+ N P+ ++F        
Sbjct: 643 LRTLDIFAGCGGLSEGLDQV---GVVNSCWAIEFEPSAAQAYRLNNPSAIVFNQDCNNVL 699

Query: 55  -DIAKIKTQD-----IP---DHDVLLAGFPCQPFS 80
             I + K +D     +P   + D+L  G PCQ FS
Sbjct: 700 KQIMEGKEKDDLGQRLPRRGEVDLLCGGPPCQGFS 734


>gi|323139132|ref|ZP_08074189.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322395603|gb|EFX98147.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 421

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 29  CFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFS 80
           C F+++ +     +YQAN+     L+ GD+ K+    +P   D++   FPCQ  S
Sbjct: 64  CLFANDFDHKKGLSYQANWGTGGELLVGDVRKVTPSQLPGCADLVWGSFPCQDLS 118


>gi|317509458|ref|ZP_07967076.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316252287|gb|EFV11739.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 321

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FGDIAKI 59
          ++ DLF G GG+ L  E        E   + +  P ++  Y+ NF +  I    GD+   
Sbjct: 11 RLLDLFSGCGGLSLGFEAA----GFEVAAAVDNWPEALAVYRRNFRHPAIELDLGDVDLA 66

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
          K   ++     D ++ G PCQ FS AG
Sbjct: 67 KAVLSEWTAGVDGIIGGPPCQDFSSAG 93


>gi|311977244|gb|ADQ20500.1| M1.BfuAI [Lysinibacillus fusiformis]
          Length = 357

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 29 CFFSSEINPYSVKTYQANFPNTLIFGD----IAKIKTQDIPDH---DVLLAGFPCQPFSQ 81
            FS EI+  +V+T+  NFP+  +F D    + K K  ++  +   D+++ G PCQ FS 
Sbjct: 26 VLFSVEIDKAAVRTHLENFPDIPVFDDDIRNLTKEKMVELTKNSEIDLVVGGPPCQGFSV 85

Query: 82 AG 83
           G
Sbjct: 86 FG 87


>gi|108805045|ref|YP_644982.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766288|gb|ABG05170.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
          Length = 405

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 21/93 (22%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI--------- 56
           DLF G GG+ L     F     +   +++++  ++ TY+ N  + ++ GDI         
Sbjct: 154 DLFSGAGGLSLG----FQWAGWQPVVANDVDEAALLTYRDNIHDVIVLGDIREHHVIDAI 209

Query: 57  ------AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 A+  + ++P    +L G PCQ FS AG
Sbjct: 210 IQKCEEARDASPNMP--FFVLGGPPCQGFSTAG 240


>gi|254671709|emb|CBA09495.1| modification methylase [Neisseria meningitidis alpha153]
          Length = 351

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHDVLLAG-FPCQPFS 80
          + +         D D++L G  PCQ +S
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWS 89


>gi|115638547|ref|XP_787412.2| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
 gi|115931470|ref|XP_001187128.1| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
          Length = 1447

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 2    LKITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
            +++  LF G+G G+ +  E  F+   VEC+++SE++  ++          +   GD+ KI
Sbjct: 1163 IRVLSLFDGLGTGMLVLRELGFD---VECYYASEVSEEAITVAAVRLKGQIQQIGDVQKI 1219

Query: 60   KTQDIPD---HDVLLAGFPCQPFS 80
              +++      D+L+ G PC   S
Sbjct: 1220 TPKELKSWGPFDILIGGSPCNDLS 1243


>gi|254804174|ref|YP_003082395.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|304388624|ref|ZP_07370688.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria
          meningitidis ATCC 13091]
 gi|254667716|emb|CBA03597.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|304337441|gb|EFM03611.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria
          meningitidis ATCC 13091]
          Length = 351

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHDVLLAG-FPCQPFS 80
          + +         D D++L G  PCQ +S
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWS 89


>gi|157412795|ref|YP_001483661.1| site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
 gi|157387370|gb|ABV50075.1| Site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
          Length = 698

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QD 63
           DLF G GG+ L L     HR N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 56  DLFSGAGGLSLGL-----HRANFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 64  IPDH-------DVLLAGFPCQPFSQ 81
           I +         ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|123967970|ref|YP_001008828.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str.
           AS9601]
 gi|123198080|gb|ABM69721.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 698

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QD 63
           DLF G GG+ L L     HR N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 56  DLFSGAGGLSLGL-----HRANFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 64  IPDH-------DVLLAGFPCQPFSQ 81
           I +         ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|91069833|gb|ABE10765.1| C-5 cytosine-specific DNA methylase [uncultured Prochlorococcus
           marinus clone ASNC1092]
          Length = 686

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QD 63
           DLF G GG+ L L     HR N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 56  DLFSGAGGLSLGL-----HRANFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 64  IPDH-------DVLLAGFPCQPFSQ 81
           I +         ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|78778763|ref|YP_396875.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9312]
 gi|78712262|gb|ABB49439.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9312]
          Length = 686

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-QD 63
           DLF G GG+ L L     HR N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 56  DLFSGAGGLSLGL-----HRANFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 64  IPDH-------DVLLAGFPCQPFSQ 81
           I +         ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|121635670|ref|YP_975915.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis FAM18]
 gi|218767413|ref|YP_002341925.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis Z2491]
 gi|120867376|emb|CAM11148.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis FAM18]
 gi|121051421|emb|CAM07714.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis Z2491]
 gi|261393340|emb|CAX50974.1| putative cytosine-specific methyltransferase [Neisseria
          meningitidis 8013]
 gi|319409676|emb|CBY89977.1| putative cytosine-specific methyltransferase [Neisseria
          meningitidis WUE 2594]
 gi|325131421|gb|EGC54130.1| modification methylase [Neisseria meningitidis M6190]
          Length = 351

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHDVLLAG-FPCQPFS 80
          + +         D D++L G  PCQ +S
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWS 89


>gi|283956744|ref|ZP_06374220.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|283791719|gb|EFC30512.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 330

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 14/87 (16%)

Query: 6  DLFCGIGGIRLDLEQT--FNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGDI 56
          DLF G GG  L   ++  FN        S + NP    +Y+ NF        + L F D 
Sbjct: 8  DLFSGAGGFSLGFLKSGAFN-----ILLSIDNNPKLSISYEKNFDFIKHINRDILSFSDK 62

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             K Q   + +V++ G PCQ FS AG
Sbjct: 63 DIQKLQQKYNFEVIIGGPPCQGFSLAG 89


>gi|295687890|ref|YP_003591583.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295429793|gb|ADG08965.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 379

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI----FGDIA 57
          +K+ +LFCG GG      +  +    E   + +++     +Y+ NFP T +     G++ 
Sbjct: 1  MKLVELFCGTGG----FSRGAHAAGFEVAVAYDLDKTLTSSYEINFPQTKLRHEDVGELT 56

Query: 58 --KIKTQDIPDHDVLLAGFPCQPFSQAG 83
            KI+ +   +   L  G PCQ FS  G
Sbjct: 57 GDKIRAEVGDEVFGLFGGPPCQGFSDIG 84


>gi|27733906|ref|NP_775697.1| putative C5-methyltransferase [Leuconostoc citreum]
 gi|27552370|emb|CAD38156.1| putative C5-methyltransferase [Leuconostoc citreum]
          Length = 403

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 41  KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +TY   F   ++  D    K    P++D+++ GFPC  FS AG
Sbjct: 112 QTYTDMFSENIVKHDKDIRKVAIFPNNDIMIGGFPCPGFSSAG 154


>gi|71903439|ref|YP_280242.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94988546|ref|YP_596647.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94992369|ref|YP_600468.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|71802534|gb|AAX71887.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94542054|gb|ABF32103.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545877|gb|ABF35924.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 110

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          ++  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MQFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIPDH----DVLLAGFP 75
            QD        D++  GF 
Sbjct: 60 TDQDFRQLRGQVDIICGGFS 79


>gi|169834659|ref|YP_001693426.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169123207|gb|ACA47042.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 490

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 41  KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +TY  N  + ++  DI+K+ + +IP   VL+ G PCQ FS + 
Sbjct: 210 ETYGKNLGSHILHEDISKV-SNNIPHATVLIGGSPCQGFSNSN 251


>gi|238759658|ref|ZP_04620818.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
 gi|238702086|gb|EEP94643.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
          Length = 369

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLFCG GG+   L ++     +      +I       Y+ N   T I  D+  +  
Sbjct: 25  IKAVDLFCGAGGLTHGLIKS----GINVVAGYDIEESCRFAYEHNNNATFINQDVTSLSG 80

Query: 62  QDIPDH-----DVLLAG-FPCQPFS 80
            ++  H       LLAG  PCQPFS
Sbjct: 81  DEVLRHLKNADYTLLAGCAPCQPFS 105


>gi|291535263|emb|CBL08375.1| DNA-methyltransferase (dcm) [Roseburia intestinalis M50/1]
          Length = 350

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 17/93 (18%)

Query: 3  KITDLFCGIGGIRL--------DLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNT 50
          ++ +LFCG GGI          + + +  H+     ++++ +  + +TY+ N     P T
Sbjct: 4  RLGELFCGPGGIAWGATHADIGNSDYSIVHQ-----WANDYDASTCETYRRNICPDAPQT 58

Query: 51 LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +   DI K     +   D L  GFPC  +S  G
Sbjct: 59 VYHEDIRKFDMSKLAPIDALAFGFPCNDYSVVG 91


>gi|260580130|ref|ZP_05847960.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Haemophilus influenzae RdAW]
 gi|260093414|gb|EEW77347.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Haemophilus influenzae RdAW]
          Length = 304

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          +K  DLF G GG+ L  E        E   + E    +++ Y+ NF + +   D+   K 
Sbjct: 1  MKCVDLFSGCGGLSLGFELA----GFEICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKE 56

Query: 61 -TQDIPDH--DVLLAGFPCQPFSQAG 83
            + I  +  D+++ G PCQ FS AG
Sbjct: 57 AVEKIKKYSPDLIMGGPPCQDFSSAG 82


>gi|16272974|ref|NP_439200.1| modification methylase [Haemophilus influenzae Rd KW20]
 gi|1171050|sp|P45000|MTH5_HAEIN RecName: Full=Modification methylase HindV; Short=M.HindV;
          AltName: Full=Cytosine-specific methyltransferase HindV
 gi|1574073|gb|AAC22700.1| modification methylase [Haemophilus influenzae Rd KW20]
          Length = 304

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          +K  DLF G GG+ L  E        E   + E    +++ Y+ NF + +   D+   K 
Sbjct: 1  MKCVDLFSGCGGLSLGFELA----GFEICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKE 56

Query: 61 -TQDIPDH--DVLLAGFPCQPFSQAG 83
            + I  +  D+++ G PCQ FS AG
Sbjct: 57 AVEKIKKYSPDLIMGGPPCQDFSSAG 82


>gi|50949214|emb|CAF31654.1| putative C5-methyltransferase [Cloning vector pGID052]
          Length = 307

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 41  KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +TY   F   ++  D    K    P++D+++ GFPC  FS AG
Sbjct: 112 QTYTDMFSENIVKHDKDIRKVAIFPNNDIMIGGFPCPGFSSAG 154


>gi|255283692|ref|ZP_05348247.1| C-5 cytosine-specific DNA methylase family protein [Bryantella
           formatexigens DSM 14469]
 gi|255265757|gb|EET58962.1| C-5 cytosine-specific DNA methylase family protein [Bryantella
           formatexigens DSM 14469]
          Length = 461

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 4   ITDLFCGIGGIRLDL------EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--- 54
           + +LF G+GG R  L      E        +  + S+  P    T  A+      FG   
Sbjct: 5   VCELFAGVGGFRCGLNNIRTAEDYGKEEKWDTVWFSQWEPAEKSTQYAHDCYVYRFGTRL 64

Query: 55  ----------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                     +I  +    +PD ++L+ GFPCQ +S A
Sbjct: 65  DKNGEDTTNYNIEDVDKTTLPDFNLLVGGFPCQDYSVA 102


>gi|262192113|ref|ZP_06050275.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
 gi|262032024|gb|EEY50600.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
          Length = 393

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------L 51
          +K  DLF G GG  L    +  H  V    + E +  +  TY+ NF              
Sbjct: 3  IKAIDLFAGAGGFTL----SAIHAGVSVLAAIEFDEAAANTYKENFIKAGKHNIDLRAGK 58

Query: 52 IFGDIAKIKTQDIPDH--------DVLLAGFPCQPFS 80
           FGDI  +   ++ D         D++L G PCQ FS
Sbjct: 59 DFGDINNVDPLELRDSLGLKKGELDLILGGPPCQGFS 95


>gi|269792571|ref|YP_003317475.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
          DSM 6589]
 gi|269100206|gb|ACZ19193.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
          DSM 6589]
          Length = 350

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECF------FSSEINPYSVKTYQANF----PNTLI 52
          ++ +LFCG GG+        N R+ +        ++++ +  + +TY+ N     P ++ 
Sbjct: 4  RLGELFCGPGGLAYG---AINARSADGKHFIVHEWANDYDKDTCETYRYNICPDRPESVY 60

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            DI K+    +   D L  GFPC  FS  G
Sbjct: 61 HEDIRKLNMDKLTPIDALAFGFPCNDFSVVG 91


>gi|23097628|ref|NP_691094.1| site-specific DNA-methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|22775851|dbj|BAC12129.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Oceanobacillus iheyensis HTE831]
          Length = 596

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LI-------F 53
           K+ DLF G GG+     QT      E   + EIN  + KTY  N      LI        
Sbjct: 13  KLIDLFAGAGGLSNGFIQT---GKFEVLGAVEINKSAAKTYVENHNKNEDLIIKSGNSGM 69

Query: 54  GDIAKI-------KTQDIPDHDVLLAGFPCQPFSQA 82
            D++KI       + +   D  V++ G PCQ FS A
Sbjct: 70  SDVSKIDFANFILEKKTSGDEIVVIGGPPCQGFSNA 105


>gi|309789600|ref|ZP_07684181.1| BsaWI methylase [Oscillochloris trichoides DG6]
 gi|308228336|gb|EFO81983.1| BsaWI methylase [Oscillochloris trichoides DG6]
          Length = 436

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           ++F G GG+ L L  +  H       + E     VKTY+ N P T+ I  D+  I ++ +
Sbjct: 18  EMFTGPGGLSLGLRSSGFH----VVGAVEKVESCVKTYRRNHPETIVIHDDVRNITSEQV 73

Query: 65  ----------PDHDVLLAGFPCQPFSQAG 83
                        D++  G PC+ FS AG
Sbjct: 74  ISIVLKVTGKKTVDLVAGGPPCETFSTAG 102


>gi|307191164|gb|EFN74862.1| DNA (cytosine-5)-methyltransferase 3A [Camponotus floridanus]
          Length = 704

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIF----GDIAKIKTQDIPDHDVLLAGFPCQPFS 80
           V+ +++SEI+  ++    A+F + + +     DI K K Q+I   D+L+ G PC   S
Sbjct: 424 VDVYYASEIDKNALTISSAHFGDRITYLGDVRDITKEKIQEIAPIDLLIGGSPCNDLS 481


>gi|183230936|ref|XP_655267.2| DNA (cytosine-5)-methyltransferase [Entamoeba histolytica
          HM-1:IMSS]
 gi|45505012|gb|AAS66974.1| 5-cytosine DNA methyltransferase [Entamoeba histolytica]
 gi|169802689|gb|EAL49892.2| DNA (cytosine-5)-methyltransferase, putative [Entamoeba
          histolytica HM-1:IMSS]
          Length = 322

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + + F GIGG+R   E++  + N   F   +IN  + K Y  NF   +   ++  I  
Sbjct: 6  VNVIEFFSGIGGLRSSYERSSININA-TFIPFDINEIANKIYSKNFKEEVQVKNLDSISI 64

Query: 62 QDIP--DHDVLLAGFPCQPFSQA 82
          + I   + +      PCQP++ +
Sbjct: 65 KQIESLNCNTWFMSPPCQPYNNS 87


>gi|17548155|ref|NP_521557.1| DNA modification cytosine-specific methyltransferase [Ralstonia
          solanacearum GMI1000]
 gi|17430462|emb|CAD16935.1| probable site-specific dna methylase protein [Ralstonia
          solanacearum GMI1000]
          Length = 364

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPNTLIFGDIAKIKT 61
          +  LFCG GG    L++ F     E   + +I P S+++Y  N   P      DI  IK 
Sbjct: 2  LLSLFCGAGG----LDKGFEQAGFEVGLAFDIRPDSIESYNRNRRAPIRGYCRDIRDIKP 57

Query: 62 QDIPD-------HDVLLAGFPCQPFSQA 82
          + + +          ++ G PCQ FS+A
Sbjct: 58 KALDELFGETFRPSGIIGGPPCQSFSRA 85


>gi|319639604|ref|ZP_07994351.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399175|gb|EFV79849.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 348

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ 62
          + DLFCG GG+ L   Q       +     +    ++ TY A    T  I  D+  I  +
Sbjct: 10 VLDLFCGCGGLSLGFIQA----GFDVKLGIDYWQDAITTYTATHKGTQGIVADLFNITPE 65

Query: 63 DIPDH------DVLLAGFPCQPFSQAG 83
           I         DV++ G PCQ FS AG
Sbjct: 66 QISQQTQIKQLDVIIGGPPCQGFSIAG 92


>gi|225026529|ref|ZP_03715721.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
 gi|224956143|gb|EEG37352.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
          Length = 461

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 4   ITDLFCGIGGIRLDL------EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--- 54
           + +LF G+GG R  L      E        +  + ++  P    T  A+      FG   
Sbjct: 5   VCELFAGVGGFRCGLNNIKTAEDYGKEEKWDTVWFNQWEPSEKTTQYAHDCYVYRFGPRL 64

Query: 55  ----------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                     +I  +    IPD ++L+ GFPCQ +S A
Sbjct: 65  DINGEDTTNYNIEDVDKAKIPDFNLLVGGFPCQDYSVA 102


>gi|253997214|ref|YP_003049278.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
 gi|253983893|gb|ACT48751.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
          Length = 358

 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 2  LKITDLFCGIGGIRLDLE-----------QTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
          LKI +LFCG GGI    E            T  H     +  S +  Y      AN   T
Sbjct: 4  LKIGELFCGPGGIAYGAELANLELIGQTATTLKHAWAVDYHQSTVKTYLKNIKGANEHTT 63

Query: 51 LI--FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          L     D+   +   I + D    GFPC  FS+ G
Sbjct: 64 LCSDVRDLNIPELSKISEIDGFAYGFPCNDFSRVG 98


>gi|14330659|emb|CAC41108.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Klebsiella pneumoniae]
          Length = 375

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 19/85 (22%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFG----DI 56
          FCG GG+ L L+Q       +   + +IN  +V+TY  N  N       +++ G    + 
Sbjct: 16 FCGAGGMSLGLKQA----GFDVRLAFDINENAVETYNKNIGNHCEKLDASIVSGKFLLEK 71

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQ 81
          A IKT+     D+   G PCQ FS+
Sbjct: 72 AGIKTR----LDLFSGGPPCQGFSK 92


>gi|110765384|ref|XP_001122269.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Apis mellifera]
          Length = 1427

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            LK  D+F G GG+   L Q      V+  ++ E +  +   Y+ N PNT +F        
Sbjct: 956  LKTLDVFAGCGGLSEGLRQA---GIVDNQWAIEKDEPAACAYRLNNPNTTVFCEDCNVLL 1012

Query: 54   -----GDIAKIKTQDIPDH---DVLLAGFPCQPFS 80
                 GD+     Q +P     ++L  G PCQ FS
Sbjct: 1013 RKVMNGDLCDNNGQRLPQKGEVELLCGGPPCQGFS 1047


>gi|149210133|ref|XP_001522441.1| hypothetical protein MGCH7_ch7g548 [Magnaporthe oryzae 70-15]
 gi|86196503|gb|EAQ71141.1| hypothetical protein MGCH7_ch7g548 [Magnaporthe oryzae 70-15]
          Length = 877

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK-IKTQD 63
           D+FCG GG      Q          ++ E   ++  TY+ NFP   +F GDI   ++  D
Sbjct: 457 DMFCGAGGA----SQGARAAGFRLGYAVEHWNHAAATYRHNFPEVNLFEGDIFDFLQRND 512

Query: 64  IPDHDVLLAGFPCQPFSQA 82
           +   D+L    PCQ +S A
Sbjct: 513 LDFVDILHLSPPCQYWSPA 531


>gi|327438866|dbj|BAK15231.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 392

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 1  MLKITDLFCGIGGIRLDLE-------QTFNHRNVECFFSSEINPYSVKTYQANF-----P 48
          + K  +LF G GG+ L  +       +T     +E  +S++ +  + +TY  N       
Sbjct: 2  IFKKGELFNGPGGLSLAAKNTVVIHPETLEEFRIEHTWSNDFDQNACRTYALNICGDEND 61

Query: 49 NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++I G + K++   +P+      GFPC  +S  G
Sbjct: 62 PSVICGPVEKLQINQLPEIQCFAFGFPCNDYSLVG 96


Searching..................................................done


Results from round 2




>gi|313667524|ref|YP_004047808.1| cytosine-specific methyltransferase [Neisseria lactamica ST-640]
 gi|309378245|emb|CBX23130.1| DNA cytosine methyltransferase M.NlaX [Neisseria lactamica
          Y92-1009]
 gi|313004986|emb|CBN86414.1| cytosine-specific methyltransferase [Neisseria lactamica 020-06]
          Length = 313

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/83 (63%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+   V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFD--GVRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 59 VADIPDHDILLAGFPCQPFSQAG 81


>gi|319407456|emb|CBI81106.1| Cytosine-specific methyltransferase NlaX [Bartonella sp. 1-1C]
          Length = 307

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M +I DLF GIGGIRL  E  F   N +C F+SEI+ YS++TY+ NF N  + GDI +I 
Sbjct: 1  MYRIIDLFAGIGGIRLGFESAFGLNNTQCIFTSEIDKYSIQTYKLNFNNDYVHGDITQIH 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++IP HD+LLAGFPCQPFSQAG
Sbjct: 61 EEEIPKHDILLAGFPCQPFSQAG 83


>gi|261400948|ref|ZP_05987073.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209191|gb|EEZ75646.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 313

 Score =  152 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/83 (63%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+   V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFDD--VRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 59 VADIPDHDILLAGFPCQPFSQAG 81


>gi|254780516|ref|YP_003064929.1| type II modification methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040193|gb|ACT56989.1| type II modification methyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 83

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK
Sbjct: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          TQDIPDHDVLLAGFPCQPFSQAG
Sbjct: 61 TQDIPDHDVLLAGFPCQPFSQAG 83


>gi|127471|sp|P24581|MTNX_NEILA RecName: Full=Cytosine-specific methyltransferase NlaX;
          Short=M.NlaX
 gi|45004|emb|CAA38357.1| cytosine-specific methyltransferase of NlaIII [Neisseria
          lactamica]
          Length = 313

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 59/83 (71%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF GIGGIRL  EQ F+   V C FSSEI+ Y+V+TYQAN     + GDI +  
Sbjct: 1  MFKIIDLFAGIGGIRLGFEQAFDD--VRCVFSSEIDKYAVQTYQANHGGETVCGDITQTD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+L AGFPCQPFSQAG
Sbjct: 59 VADIPDHDILSAGFPCQPFSQAG 81


>gi|332188292|ref|ZP_08390019.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
 gi|332011688|gb|EGI53766.1| DNA-cytosine methyltransferase family protein [Sphingomonas sp.
           S17]
          Length = 423

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
               DLF GIGGIRL  E         C F+SE + Y+ KTY  NF     I GDI K+ 
Sbjct: 71  FTFIDLFAGIGGIRLGFEAA----GGRCVFTSEWDKYAQKTYIENFGEEHEIAGDITKVD 126

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPDHDVLLAGFPCQPFS AG
Sbjct: 127 ADDIPDHDVLLAGFPCQPFSLAG 149


>gi|150026187|ref|YP_001297013.1| type II modification methyltransferase [Flavobacterium
          psychrophilum JIP02/86]
 gi|149772728|emb|CAL44211.1| Probable type II modification methyltransferase [Flavobacterium
          psychrophilum JIP02/86]
          Length = 335

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/82 (60%), Positives = 61/82 (74%), Gaps = 1/82 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGGIRL  E    + N+EC F+SE N YS +TY AN+PN ++ GDI +I  
Sbjct: 7  IKIIDLFAGIGGIRLGFELASKN-NIECVFTSEWNKYSEQTYLANYPNEIVHGDITQISE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+LLAGFPCQPFSQAG
Sbjct: 66 TQIPEHDILLAGFPCQPFSQAG 87


>gi|328947602|ref|YP_004364939.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447926|gb|AEB13642.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 431

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
               DLF GIGGIR   EQ       +C F+SE + ++ KTY  N+P    I GDI K+ 
Sbjct: 75  FTFIDLFAGIGGIRKGFEQA----GGKCVFTSEWDEFAQKTYSNNYPSKCPINGDITKVN 130

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +DIPDHDVLLAGFPCQPFS AG
Sbjct: 131 AEDIPDHDVLLAGFPCQPFSIAG 153


>gi|315498495|ref|YP_004087299.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB
           48]
 gi|315416507|gb|ADU13148.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB
           48]
          Length = 410

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
               DLF GIGG+R   ++   H    C F+SE N Y+ +TY ANF  N  I GDI +I+
Sbjct: 66  FTFIDLFAGIGGLRRGFDEIGGH----CVFTSEWNKYAQQTYAANFRDNHPIHGDITQIE 121

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
           T DIPDHDVLLAGFPCQPFS AG
Sbjct: 122 TADIPDHDVLLAGFPCQPFSIAG 144


>gi|323650698|gb|ADX97433.1| M1.BspACI [Bacillus psychrodurans]
          Length = 320

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG R+ LE+       +C FSS+I+ Y+ +TY+ NF      GDI KIK+
Sbjct: 4  FKFIDLFSGIGGFRIALEE----NGGQCVFSSDIDKYARETYKENFGEEPS-GDITKIKS 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPDHD+L AGFPCQPFS AG
Sbjct: 59 EEIPDHDILCAGFPCQPFSIAG 80


>gi|462657|sp|P34877|MTSA_LACLC RecName: Full=Modification methylase ScrFIA; Short=M.ScrFI-A;
           Short=M.ScrFIA; AltName: Full=Cytosine-specific
           methyltransferase ScrFIA
 gi|149493|gb|AAA25220.1| SCRFI methylase [Lactococcus lactis]
 gi|2327034|gb|AAB66696.1| 5-methyl-cytosine methyltransferase [Lactococcus lactis subsp.
           cremoris]
          Length = 389

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL   QT     V+  FSSEI+ +++KTY+ANF +    GDI KI  
Sbjct: 79  YKMIDLFAGIGGTRLGFHQT---EKVKSVFSSEIDKFAIKTYKANFGDEP-HGDITKIDE 134

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDHD+L+ GFPCQ FSQAG
Sbjct: 135 KDIPDHDILVGGFPCQAFSQAG 156


>gi|217980150|ref|YP_002364200.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
 gi|217508321|gb|ACK55106.1| DNA-cytosine methyltransferase [Thauera sp. MZ1T]
          Length = 419

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
               DLF G+GGIR+  E         C F+SE + Y+ KTY  NFP    + GDI KI+
Sbjct: 66  FTFIDLFAGVGGIRMGFEA----HGGRCVFTSEWDSYAQKTYAENFPAEHPLNGDITKIE 121

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPDHDVLLAGFPCQPFS AG
Sbjct: 122 AADIPDHDVLLAGFPCQPFSIAG 144


>gi|254429380|ref|ZP_05043087.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
 gi|196195549|gb|EDX90508.1| DNA-cytosine methyltransferase superfamily [Alcanivorax sp. DG881]
          Length = 435

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
            K  DLF GIGG+R+  E        +C F+SE + Y+ +TY  NF ++  + GDI ++ 
Sbjct: 86  FKFVDLFAGIGGLRMAFESA----GGQCVFTSEWDSYAQRTYLGNFGDSHQLNGDITEVN 141

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPDHDVLLAGFPCQPFS AG
Sbjct: 142 AADIPDHDVLLAGFPCQPFSIAG 164


>gi|254251049|ref|ZP_04944367.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124893658|gb|EAY67538.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 530

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               DLF GIGGIR+  E         C F+SE + Y+ KTY  NFP+   I GDI  + 
Sbjct: 172 FTFIDLFAGIGGIRMAFE----LNGGRCVFTSEWDSYAQKTYHVNFPDGMPIHGDITDVD 227

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
              IP HDVLLAGFPCQPFS AG
Sbjct: 228 ETSIPSHDVLLAGFPCQPFSIAG 250


>gi|268595734|ref|ZP_06129901.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291044897|ref|ZP_06570606.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397972|ref|ZP_06642178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|268549123|gb|EEZ44541.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae 35/02]
 gi|291011791|gb|EFE03787.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611918|gb|EFF40987.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 320

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 6  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQVYEANFGEKP-FGDINGID 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 61 PSDIPDHDILLAGFPCQPFSIAG 83


>gi|194099739|ref|YP_002002874.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|240013125|ref|ZP_04720038.1| NgoIM [Neisseria gonorrhoeae DGI18]
 gi|240015568|ref|ZP_04722108.1| NgoIM [Neisseria gonorrhoeae FA6140]
 gi|240114103|ref|ZP_04728593.1| NgoIM [Neisseria gonorrhoeae MS11]
 gi|240114658|ref|ZP_04728720.1| NgoIM [Neisseria gonorrhoeae PID18]
 gi|240120196|ref|ZP_04733158.1| NgoIM [Neisseria gonorrhoeae PID24-1]
 gi|240122493|ref|ZP_04735449.1| NgoIM [Neisseria gonorrhoeae PID332]
 gi|240126658|ref|ZP_04739544.1| NgoIM [Neisseria gonorrhoeae SK-92-679]
 gi|254492718|ref|ZP_05105889.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|260441536|ref|ZP_05795352.1| NgoIM [Neisseria gonorrhoeae DGI2]
 gi|268600171|ref|ZP_06134338.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268600304|ref|ZP_06134471.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268602536|ref|ZP_06136703.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268681085|ref|ZP_06147947.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268685237|ref|ZP_06152099.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268685565|ref|ZP_06152427.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|193935029|gb|ACF30853.1| NgoIM [Neisseria gonorrhoeae NCCP11945]
 gi|226511758|gb|EEH61103.1| modification methylase NgoBI [Neisseria gonorrhoeae 1291]
 gi|268584302|gb|EEZ48978.1| modification methylase NgoBI [Neisseria gonorrhoeae MS11]
 gi|268584435|gb|EEZ49111.1| modification methylase NgoBI [Neisseria gonorrhoeae PID18]
 gi|268586667|gb|EEZ51343.1| modification methylase NgoBI [Neisseria gonorrhoeae PID1]
 gi|268621369|gb|EEZ53769.1| modification methylase NgoBI [Neisseria gonorrhoeae PID332]
 gi|268625521|gb|EEZ57921.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-92-679]
 gi|268625849|gb|EEZ58249.1| modification methylase NgoBI [Neisseria gonorrhoeae SK-93-1035]
 gi|317165226|gb|ADV08767.1| NgoIM [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 315

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQVYEANFGEKP-FGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|220930232|ref|YP_002507141.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000560|gb|ACL77161.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 416

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E     +  +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFE----DKYTKCVFSSEWDKYAAQTYEANYGEKP-HGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 156 NDIPDHDVLLAGFPCQPFSNIG 177


>gi|153955289|ref|YP_001396054.1| DNA methylase [Clostridium kluyveri DSM 555]
 gi|146348147|gb|EDK34683.1| Predicted DNA methylase [Clostridium kluyveri DSM 555]
          Length = 416

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E     +  +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFE----DKYTKCVFSSEWDKYAAQTYEANYGEKP-HGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 156 NDIPDHDVLLAGFPCQPFSNIG 177


>gi|12229862|sp|Q59603|MTB1_NEIGO RecName: Full=Modification methylase NgoBI; Short=M.NgoBI;
          AltName: Full=Cytosine-specific methyltransferase
          NgoBI; Short=M.NgoI
 gi|5924404|gb|AAB03206.2| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae]
          Length = 317

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQVYEANFGEKP-FGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|323486195|ref|ZP_08091524.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|323400521|gb|EGA92890.1| cytosine-specific methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 382

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGG+R+  E+       +C +SSE N YS +TY ANF      GDI +++ 
Sbjct: 55  FRFIDLFAGIGGMRIAYERA----GGKCVYSSEWNKYSQQTYFANFGEQP-EGDITQVEA 109

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDHD+L+AGFPCQPFS AG
Sbjct: 110 EDIPDHDILVAGFPCQPFSIAG 131


>gi|268597921|ref|ZP_06132088.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
 gi|268551709|gb|EEZ46728.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA19]
          Length = 320

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 6  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQVYEANFGEKP-FGDINGID 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 61 PSDIPDHDILLAGFPCQPFSIAG 83


>gi|219855710|ref|YP_002472832.1| hypothetical protein CKR_2367 [Clostridium kluyveri NBRC 12016]
 gi|219569434|dbj|BAH07418.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 419

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E     +  +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 104 LTFIDLFAGIGGIRLGFE----DKYTKCVFSSEWDKYAAQTYEANYGEKP-HGDITKINE 158

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHDVLLAGFPCQPFS  G
Sbjct: 159 NDIPDHDVLLAGFPCQPFSNIG 180


>gi|59802299|ref|YP_209011.1| NgoIM [Neisseria gonorrhoeae FA 1090]
 gi|240081825|ref|ZP_04726368.1| NgoIM [Neisseria gonorrhoeae FA19]
 gi|59719194|gb|AAW90599.1| cytosine DNA methylase M.NgoI [Neisseria gonorrhoeae FA 1090]
          Length = 315

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQVYEANFGEKP-FGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|163732386|ref|ZP_02139832.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
 gi|161394684|gb|EDQ19007.1| hypothetical protein RLO149_03007 [Roseobacter litoralis Och 149]
          Length = 410

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
               DLF GIGG+R  +E         C F+SE + ++ +TY ANFP+   I GDI +I 
Sbjct: 63  FSFIDLFAGIGGLRKAMESA----GGRCVFTSEWDRFAQQTYDANFPDNRPIAGDITEID 118

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +++P+HDVL+AGFPCQPFS AG
Sbjct: 119 AEELPEHDVLVAGFPCQPFSIAG 141


>gi|328948822|ref|YP_004366159.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328449146|gb|AEB14862.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 437

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR   E       +  EC F+SEI P++V+  + N PN  + GDI KI
Sbjct: 7  IKFIDLFAGIGGIRKGFESACADLGIKTECVFTSEIKPHAVEVLKQNHPNETVRGDITKI 66

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T +IPD D LL GFPCQ FS AG
Sbjct: 67 ETAEIPDFDFLLGGFPCQAFSAAG 90


>gi|312898460|ref|ZP_07757850.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
 gi|310620379|gb|EFQ03949.1| DNA (cytosine-5-)-methyltransferase [Megasphaera micronuciformis
           F0359]
          Length = 400

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG+RL  EQ   H    C +S+E N YS +TY ANF      GDI K+  
Sbjct: 53  FTFIDLFAGIGGMRLAYEQAGGH----CVYSNEWNKYSQQTYFANFGEQPD-GDITKVDE 107

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L+AGFPCQPFS AG
Sbjct: 108 NSIPDHDILVAGFPCQPFSIAG 129


>gi|172036128|ref|YP_001802629.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171697582|gb|ACB50563.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 349

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 5/83 (6%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++K  DLF GIGG+RL   + F     +C FSSE + Y+ KTY+ANF     FGDI +I 
Sbjct: 38  IIKFVDLFAGIGGMRLGFSRPFT----QCVFSSEWDKYAQKTYEANFQEKP-FGDINEIH 92

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            QDIPDHD+L+ GFPCQPFS  G
Sbjct: 93  LQDIPDHDILIGGFPCQPFSTIG 115


>gi|166368844|ref|YP_001661117.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
 gi|166091217|dbj|BAG05925.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
          Length = 338

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K  DLF GIGG R+  E    +   +C FSSE N +S KTY+ANF ++   GDI  I 
Sbjct: 1  MVKFIDLFAGIGGFRIAFE----NLGCQCVFSSEWNKFSRKTYEANFNDSP-EGDITLIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L AGFPCQPFS AG
Sbjct: 56 ALTIPDHDILTAGFPCQPFSIAG 78


>gi|296126560|ref|YP_003633812.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018376|gb|ADG71613.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 311

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M +  DLF G+GG  L         +  C F+SEI+  + +TY+ NFP+T++ GDI +I 
Sbjct: 1  MYRFIDLFAGVGGFHLAF------NSENCVFASEIDINARETYKLNFPDTVLEGDITEID 54

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++IP+HD+L AGFPCQPFS AG
Sbjct: 55 EKNIPEHDILCAGFPCQPFSVAG 77


>gi|260554958|ref|ZP_05827179.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
 gi|260411500|gb|EEX04797.1| DNA-methyltransferase MKpn2kI [Acinetobacter baumannii ATCC 19606]
          Length = 413

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIRL  +Q       +C FSSE + ++ KTY ANF   L  GDI +I+ 
Sbjct: 59  FTFIDLFAGIGGIRLPFQQLKG----KCVFSSEWDKFAQKTYAANFG-ELPSGDITQIRA 113

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LL GFPCQ FSQAG
Sbjct: 114 ADIPDHDILLGGFPCQAFSQAG 135


>gi|148244085|ref|YP_001220322.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400648|gb|ABQ29180.1| DNA-cytosine methyltransferase [Acidiphilium cryptum JF-5]
          Length = 487

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 52/84 (61%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
               DLF GIGG+R   E         C F+SE + YS  TY AN+P  +  I GDI KI
Sbjct: 132 FTFIDLFAGIGGLRRGFEA----IGGRCVFTSEWDKYSQATYAANYPYDDHTISGDITKI 187

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIP+HDVLLAGFPCQPFS AG
Sbjct: 188 GEKDIPEHDVLLAGFPCQPFSIAG 211


>gi|167751356|ref|ZP_02423483.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
 gi|167655602|gb|EDR99731.1| hypothetical protein EUBSIR_02342 [Eubacterium siraeum DSM 15702]
          Length = 475

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 2/83 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
            +  DLF GIGGIRL  E+ F ++ +E  F SE + Y+ KTY+ANF +   I GDI KI 
Sbjct: 141 FRSIDLFAGIGGIRLGFERAFKNQ-IETVFVSEWDEYAQKTYRANFEDDFEIAGDITKID 199

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             D+P+ D+ LAGFPCQ FS AG
Sbjct: 200 ESDVPEFDICLAGFPCQAFSLAG 222


>gi|259500984|ref|ZP_05743886.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
 gi|302190566|ref|ZP_07266820.1| DNA-cytosine methyltransferase [Lactobacillus iners AB-1]
 gi|259167678|gb|EEW52173.1| modification methylase EcoRII [Lactobacillus iners DSM 13335]
          Length = 336

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYQMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|78777762|ref|YP_394077.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans
          DSM 1251]
 gi|78498302|gb|ABB44842.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans
          DSM 1251]
          Length = 328

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGGIRL  EQ F  + +E  F+SEI+ Y+ +TY ANF  T   GDI +I  
Sbjct: 20 FRAIDLFAGIGGIRLGFEQAFGEK-IEFVFASEIDKYARETYYANFGETP-HGDITQIDE 77

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  D+LLAGFPCQ FS AG
Sbjct: 78 KNIPPFDILLAGFPCQAFSVAG 99


>gi|300813374|ref|ZP_07093725.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836
          str. F0141]
 gi|300512517|gb|EFK39666.1| Modification methylase HpaII [Peptoniphilus sp. oral taxon 836
          str. F0141]
          Length = 347

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M K  DLF GIGGIRL  +Q F + ++E  F SE +  + +TY ANF     IFGDI KI
Sbjct: 1  MFKSIDLFAGIGGIRLGFDQAFGN-DIETVFVSEWDKKAQETYIANFGEKPKIFGDITKI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP HD+LLAGFPCQ FS AG
Sbjct: 60 DEIDIPIHDILLAGFPCQAFSLAG 83


>gi|289423024|ref|ZP_06424844.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
 gi|289156598|gb|EFD05243.1| putative site-specific DNA-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
          Length = 706

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E        +C FSSEI+ ++ + Y+ NF       DI ++  
Sbjct: 6  LKFIDLFAGIGGFRLGFENA----GCKCVFSSEIDDHACEMYELNFGENPRC-DITQLNP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPD D+L AGFPCQ FS  G
Sbjct: 61 KDIPDFDILCAGFPCQAFSICG 82


>gi|54293106|ref|YP_125521.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
 gi|53752938|emb|CAH14374.1| hypothetical protein lpl0145 [Legionella pneumophila str. Lens]
          Length = 417

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 51/84 (60%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
               DLF GIGGIRL  E        EC F+SE + YS  TY+ NF   +  I GDI K+
Sbjct: 67  FSFIDLFAGIGGIRLGFES----IGGECIFTSEWDKYSQITYRKNFRNDHHPIIGDITKV 122

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
               IP+HDVLLAGFPCQPFS AG
Sbjct: 123 DVNFIPEHDVLLAGFPCQPFSLAG 146


>gi|313892290|ref|ZP_07825883.1| modification methylase HpaII [Dialister microaerophilus UPII
          345-E]
 gi|313119428|gb|EFR42627.1| modification methylase HpaII [Dialister microaerophilus UPII
          345-E]
          Length = 329

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M K  DLF GIGGIRL  EQ F +  ++  F SE +  + +TY+ANF + + I GDI  I
Sbjct: 1  MYKSIDLFAGIGGIRLGFEQAFKNE-IKTVFVSEWDKKAQETYRANFKDDIEIRGDINTI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +DIP H++LLAGFPCQ FS AG
Sbjct: 60 DEKDIPKHNILLAGFPCQAFSLAG 83


>gi|127427|sp|P17044|MTBF_BACSU RecName: Full=Modification methylase BsuFI; Short=M.BsuFI; AltName:
           Full=Cytosine-specific methyltransferase BsuFI
 gi|39984|emb|CAA35888.1| unnamed protein product [Bacillus subtilis]
          Length = 409

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   DLF GIGGIRL  E     +  +C FSSE + Y+ +TY+AN+      GDI KI  
Sbjct: 101 LTFIDLFAGIGGIRLGFE----DKYTKCVFSSEWDKYAAQTYEANYGEKP-HGDITKINE 155

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPD DVLLAGFPCQPFS  G
Sbjct: 156 NDIPDQDVLLAGFPCQPFSNIG 177


>gi|329920363|ref|ZP_08277095.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
 gi|328936039|gb|EGG32492.1| modification methylase HhaI [Lactobacillus iners SPIN 1401G]
          Length = 336

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|296313699|ref|ZP_06863640.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
 gi|296839717|gb|EFH23655.1| modification methylase NgoBI [Neisseria polysaccharea ATCC 43768]
          Length = 315

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQMYEANFGEKP-FGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|254804105|ref|YP_003082326.1| putative type II DNA modification methyltransferase [Neisseria
          meningitidis alpha14]
 gi|254667647|emb|CBA03458.1| putative type II DNA modification methyltransferase [Neisseria
          meningitidis alpha14]
          Length = 315

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLF GIGGIRL  E+          FSSE + Y+ + Y+ANF     FGDI  I 
Sbjct: 1  MYKTIDLFSGIGGIRLGFEK----YGCTNVFSSEWDKYARQMYEANFGEKP-FGDINGID 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFS AG
Sbjct: 56 PSDIPDHDILLAGFPCQPFSIAG 78


>gi|126464142|ref|YP_001045255.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105953|gb|ABN78483.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides ATCC 17029]
          Length = 417

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGG+R   +    H    C F+SE + ++ +TY+AN+   P  +  GDI K
Sbjct: 62  FRFIDLFAGIGGLRRGFDAVGGH----CVFTSEWDRFAQQTYRANYHDGPAHVFKGDITK 117

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++  +IP+HDVLLAGFPCQPFS AG
Sbjct: 118 VEMHEIPEHDVLLAGFPCQPFSIAG 142


>gi|312872570|ref|ZP_07732638.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2062A-h1]
 gi|311091932|gb|EFQ50308.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2062A-h1]
          Length = 336

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|224543136|ref|ZP_03683675.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523923|gb|EEF93028.1| hypothetical protein CATMIT_02336 [Catenibacterium mitsuokai DSM
          15897]
          Length = 430

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR   E   + R V  EC F+SEI PY++K  + N PN  I GDI ++
Sbjct: 5  IKFVDLFAGIGGIRKGFELACSDRGVKTECVFTSEIKPYAIKVLKQNHPNETITGDITQV 64

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              IPD D LL GFPCQ FS AG
Sbjct: 65 DATKIPDFDFLLGGFPCQAFSAAG 88


>gi|54297036|ref|YP_123405.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
 gi|53750821|emb|CAH12229.1| hypothetical protein lpp1078 [Legionella pneumophila str. Paris]
          Length = 320

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/82 (58%), Positives = 55/82 (67%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIR+  ++     N EC FSSEI+PY  KTY+ANF     FGDI KI  
Sbjct: 6  FKFIDLFAGIGGIRIPFDK----LNGECVFSSEIDPYCQKTYEANFGEKP-FGDITKISP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          QD+PDHD+LL GFPCQ FS  G
Sbjct: 61 QDVPDHDILLGGFPCQAFSIIG 82


>gi|309803758|ref|ZP_07697844.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          11V1-d]
 gi|308164167|gb|EFO66428.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          11V1-d]
          Length = 336

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAQCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|291530358|emb|CBK95943.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 696

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           K  DLF GIGGIRL  EQ F +  +   F SE + Y+ +TY+ANF +   I GDI +I 
Sbjct: 4  YKSIDLFAGIGGIRLGFEQAFGNS-INTVFVSEWDKYAQETYKANFRDKFDIAGDITQID 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIPD D+ LAGFPCQ FS AG
Sbjct: 63 ERDIPDFDICLAGFPCQAFSLAG 85


>gi|331002097|ref|ZP_08325616.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411191|gb|EGG90607.1| hypothetical protein HMPREF0491_00478 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 706

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E        +C FSSEI+ ++ + Y+ NF       DI K+  
Sbjct: 6  LKFIDLFAGIGGFRLGFEDA----GCKCVFSSEIDEHACEMYELNFGENPKC-DITKLNI 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPD D+L AGFPCQ FS  G
Sbjct: 61 KDIPDFDILCAGFPCQAFSICG 82


>gi|149184876|ref|ZP_01863193.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
 gi|148830987|gb|EDL49421.1| hypothetical protein ED21_17522 [Erythrobacter sp. SD-21]
          Length = 410

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
               DLF GIGG+R    + F+     C F+SE + Y+  TY  N+P+   I GDI K+ 
Sbjct: 64  FTFIDLFAGIGGLR----RAFDGIGGRCVFTSEWDKYAQLTYHTNYPDNRPIAGDITKVP 119

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             +IP HDVLLAGFPCQPFS AG
Sbjct: 120 VDEIPVHDVLLAGFPCQPFSIAG 142


>gi|210631776|ref|ZP_03297018.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
 gi|210159896|gb|EEA90867.1| hypothetical protein COLSTE_00903 [Collinsella stercoris DSM 13279]
          Length = 390

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIR+  ++       EC FS E + ++ KTY+ N+  T   GDI ++  
Sbjct: 73  FTFIDLFAGIGGIRMPFQE----LGGECVFSCEWDKFAQKTYRMNYGETP-AGDIREVAA 127

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPD DVLLAGFPCQPFS AG
Sbjct: 128 SDIPDFDVLLAGFPCQPFSLAG 149


>gi|315608882|ref|ZP_07883855.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
 gi|315249409|gb|EFU29425.1| modification methylase EcoRII [Prevotella buccae ATCC 33574]
          Length = 312

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGGIRL  E    H    C FSSE +  + KTY+ANF      GDI KI+ 
Sbjct: 6  FSFIDLFAGIGGIRLGFESAGGH----CVFSSEFDENACKTYEANFGEHPS-GDITKIEA 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPD D+LL GFPCQ FS  G
Sbjct: 61 KDIPDFDILLGGFPCQAFSIIG 82


>gi|290969050|ref|ZP_06560585.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
          str. 28L]
 gi|290781006|gb|EFD93599.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
          str. 28L]
          Length = 333

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 54/84 (64%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M +  DLF GIGGIRL  EQ F    +   F+SE N  S +TY ANF   + IFGDI  I
Sbjct: 1  MYRAIDLFAGIGGIRLGFEQAFG-AEMTTVFTSEWNKKSQETYLANFGEEIHIFGDITAI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IP HD+LLAGFPCQ FS AG
Sbjct: 60 DERNIPPHDILLAGFPCQAFSLAG 83


>gi|315653956|ref|ZP_07906872.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
 gi|315488652|gb|EFU78298.1| modification methylase EcoRII [Lactobacillus iners ATCC 55195]
          Length = 336

 Score =  137 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|312874943|ref|ZP_07734962.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2053A-b]
 gi|311089688|gb|EFQ48113.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2053A-b]
          Length = 336

 Score =  137 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|312874304|ref|ZP_07734336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2052A-d]
 gi|311090177|gb|EFQ48589.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          2052A-d]
          Length = 336

 Score =  137 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|309809622|ref|ZP_07703479.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
          2503V10-D]
 gi|308170103|gb|EFO72139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners SPIN
          2503V10-D]
          Length = 336

 Score =  137 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|309804726|ref|ZP_07698791.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          09V1-c]
 gi|312871535|ref|ZP_07731628.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          3008A-a]
 gi|325913106|ref|ZP_08175476.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          60-B]
 gi|308166118|gb|EFO68336.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          09V1-c]
 gi|311092930|gb|EFQ51281.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
          3008A-a]
 gi|325477527|gb|EGC80669.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          60-B]
          Length = 336

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|309807025|ref|ZP_07701007.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          03V1-b]
 gi|308166645|gb|EFO68842.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LactinV
          03V1-b]
          Length = 336

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYQMNFGDTP-GGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|189423370|ref|YP_001950547.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419629|gb|ACD94027.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 415

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
           M    DLF GIGGIRL  +         C F+SE N +S KTY  NF N   I GDI   
Sbjct: 67  MFTFIDLFAGIGGIRLGFQSA----GGRCVFTSEWNDWSQKTYVENFGNEHAIVGDIVPY 122

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             +DIPDHDVLLAGFPCQPFS AG
Sbjct: 123 PAEDIPDHDVLLAGFPCQPFSIAG 146


>gi|254445875|ref|ZP_05059351.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
 gi|198260183|gb|EDY84491.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
          Length = 321

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGG R+ LE+       EC FSSEI+ ++  TY+ NF +    GDI KI  
Sbjct: 7  FRFIDLFAGIGGFRIGLER----LGGECVFSSEIDRHAAATYERNFGHKP-AGDITKIDA 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++PDH+V+  GFPCQPFS +G
Sbjct: 62 SEVPDHEVICGGFPCQPFSVSG 83


>gi|325912401|ref|ZP_08174796.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          143-D]
 gi|325475743|gb|EGC78914.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII
          143-D]
          Length = 336

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TYQ NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDRFAQETYQMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TSIPDHDILCAGFPCQPFSISG 88


>gi|325913633|ref|ZP_08175995.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
 gi|325476992|gb|EGC80142.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners UPII 60-B]
          Length = 372

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLF GIGGIRL  E   + +N EC +SSE + Y+ KTYQANF   +  GDI K+  
Sbjct: 56  IKFIDLFAGIGGIRLGFE--GDSKNTECVYSSEWDKYAQKTYQANFG-VMPDGDITKVSA 112

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP+ +VLLAGFPCQPFS  G
Sbjct: 113 SSIPNFNVLLAGFPCQPFSSIG 134


>gi|119355933|ref|YP_910577.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
 gi|119353282|gb|ABL64153.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
           266]
          Length = 425

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
               DLF GIGG+R   E+        C F+SE + YS +TY ANF  +  I GDI KI 
Sbjct: 67  FTFIDLFAGIGGMRKAFEE----LGGRCVFTSEWDKYSRQTYCANFDCDHEIGGDITKID 122

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +DIP HD+L+AGFPCQPFS AG
Sbjct: 123 ARDIPSHDILVAGFPCQPFSIAG 145


>gi|50914506|ref|YP_060478.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|40218542|gb|AAR83196.1| type II modification methylase [Streptococcus pyogenes]
 gi|50261587|gb|AAT72355.1| methylase [Streptococcus pyogenes]
 gi|50903580|gb|AAT87295.1| Type II restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|114386439|gb|ABI74454.1| DNA methyltransferase [Streptococcus pyogenes]
          Length = 408

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL  + T     VE  F+SE + ++ KTY  NF +T   GDI +I  
Sbjct: 101 FKMIDLFAGIGGTRLGFQLTNE---VETVFTSEWDKFAQKTYITNFGDTP-EGDITQIDE 156

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L+AGFPCQ FSQAG
Sbjct: 157 NTIPDHDILVAGFPCQAFSQAG 178


>gi|238922589|ref|YP_002936102.1| modification methylase [Eubacterium rectale ATCC 33656]
 gi|238874261|gb|ACR73968.1| modification methylase [Eubacterium rectale ATCC 33656]
          Length = 392

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG+RL  E    +    C +S+E N YS +TY ANF      GDI K+  
Sbjct: 65  FTFIDLFAGIGGMRLAYE----NVGGRCVYSNEWNKYSQQTYYANFGEQP-EGDITKVDA 119

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           + IPDHD+L+AGFPCQPFS AG
Sbjct: 120 KTIPDHDILVAGFPCQPFSIAG 141


>gi|283471715|emb|CAQ50926.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 397

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL  +    H NV+C FSSE + +S KTY+ANF  T   GDI +I  
Sbjct: 86  YKMIDLFAGIGGTRLGFQ---LHGNVKCVFSSEWDKFSAKTYKANFGETP-KGDITQIIA 141

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            +IP HD+L+AGFPCQ FSQAG
Sbjct: 142 DEIPTHDILVAGFPCQAFSQAG 163


>gi|149926993|ref|ZP_01915251.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
 gi|149824214|gb|EDM83434.1| C-5 cytosine-specific DNA methylase [Limnobacter sp. MED105]
          Length = 435

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
               DLF G+GGIR    + F ++  +C F+SE + Y+ KTY+ N+   +  I GDI K+
Sbjct: 85  FTFIDLFAGVGGIR----RAFENQGGKCVFTSEWDSYAQKTYRENYQRDHHEISGDITKV 140

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
            T DIP+HDVLLAGFPCQPFS AG
Sbjct: 141 NTVDIPNHDVLLAGFPCQPFSIAG 164


>gi|325989685|ref|YP_004249384.1| cytosine-specific methyltransferase [Mycoplasma suis KI3806]
 gi|323574770|emb|CBZ40430.1| Cytosine-specific methyltransferase [Mycoplasma suis]
          Length = 326

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K+ DLF GIGG RL    T     V+  FSSEI+ ++ +TY++NF +  + GDI +I +
Sbjct: 19 YKMIDLFAGIGGTRLGFHLTGE---VKVVFSSEIDKFAKQTYKSNFSDEPL-GDIREINS 74

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+HD+L+AGFPCQ FSQAG
Sbjct: 75 EDIPNHDILVAGFPCQAFSQAG 96


>gi|86136173|ref|ZP_01054752.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
 gi|85827047|gb|EAQ47243.1| hypothetical protein MED193_18659 [Roseobacter sp. MED193]
          Length = 399

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF GIGG+R+  E         C F+SE N +S +TY ANF +     GDI +I 
Sbjct: 50  FSFIDLFAGIGGLRVGFEAA----GGTCVFTSEWNRFSQETYSANFGDEHPLSGDITEIS 105

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             +IP HDVLLAGFPCQPFS AG
Sbjct: 106 EAEIPAHDVLLAGFPCQPFSIAG 128


>gi|326571776|gb|EGE21785.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC7]
          Length = 458

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIRL  E+        C FSSE + ++ +TYQ N  + + FGDI +I  
Sbjct: 120 FKFIDLFAGIGGIRLGAER----NGGLCVFSSEFDKFAQQTYQLNH-HEMPFGDITQIDA 174

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            ++P HD+LLAGFPCQPFS +G
Sbjct: 175 NNLPSHDLLLAGFPCQPFSYSG 196


>gi|319893523|ref|YP_004150398.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163219|gb|ADV06762.1| DNA-cytosine methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 394

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL  +    + NV+  FSSE + +S KTY+ANF   +  GDI +IK 
Sbjct: 86  YKMIDLFAGIGGTRLGFQ---LNGNVKSVFSSEWDKFSQKTYKANFG-EIPAGDITEIKE 141

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIP+HD+L+ GFPCQ FSQAG
Sbjct: 142 GDIPNHDILVGGFPCQAFSQAG 163


>gi|325973250|ref|YP_004250314.1| cytosine-specific DNA modification methylase, HpaII-like protein
          [Mycoplasma suis str. Illinois]
 gi|323651852|gb|ADX97934.1| cytosine-specific DNA modification methylase, HpaII-like protein
          [Mycoplasma suis str. Illinois]
          Length = 326

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ DLF GIGG RL    T     V+  FSSEI+ ++ KTY++NF +  + GDI +I +
Sbjct: 19 YRMIDLFAGIGGTRLGFHLTGE---VKVVFSSEIDKFAKKTYKSNFSDEPL-GDIREINS 74

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+HD+L+AGFPCQ FSQAG
Sbjct: 75 EDIPNHDILVAGFPCQAFSQAG 96


>gi|159027151|emb|CAO86782.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF GIGG R+ LE    +   +C FSSEI+P+S K Y AN+ +     DI K++
Sbjct: 1  MWTFIDLFAGIGGFRIALE----NLGCQCVFSSEIDPHSQKVYLANYGHLPDNQDIRKLE 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +PDHD+L  GFPCQ FS AG
Sbjct: 57 AKTVPDHDILCGGFPCQAFSIAG 79


>gi|170729237|ref|YP_001763263.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169814584|gb|ACA89168.1| DNA-cytosine methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 416

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG+RL  +Q     +  C FSSE + ++  TYQ N    L FGDI  I  
Sbjct: 96  FKFIDLFAGIGGVRLGFQQ----NDGACVFSSEFDKHAQATYQTNHG-ELPFGDITAINP 150

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IPDHDVLLAGFPCQPFS AG
Sbjct: 151 THIPDHDVLLAGFPCQPFSHAG 172


>gi|321310755|ref|YP_004193084.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802599|emb|CBY93245.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
           Langford 1]
          Length = 362

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF GIGG RL   +T     V   FSSEI+ +S+KTY+ANF  T   GDI KI +
Sbjct: 55  YKMIDLFAGIGGTRLGFYKTGK---VNVVFSSEIDKFSIKTYKANFGETPS-GDITKIGS 110

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDHD+L+ GFPCQ FSQAG
Sbjct: 111 EDIPDHDILVGGFPCQSFSQAG 132


>gi|152998369|ref|YP_001343204.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
 gi|150839293|gb|ABR73269.1| DNA-cytosine methyltransferase [Marinomonas sp. MWYL1]
          Length = 417

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGG+RL  +Q        C FSSE + ++  TY+ N      FGDI  I  
Sbjct: 96  FRFIDLFAGIGGVRLGFQQA----GGTCVFSSEFDKHAQLTYKKNHG-EFPFGDITLISP 150

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           + IP HDVLLAGFPCQPFS AG
Sbjct: 151 ESIPAHDVLLAGFPCQPFSHAG 172


>gi|323650700|gb|ADX97434.1| M2.BspACI [Bacillus psychrodurans]
          Length = 444

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LKI  LF GIGG    LE++  + + +  FSSEI+ ++  +Y+ANFPN  + GDI KI  
Sbjct: 86  LKIVSLFSGIGGFEAGLEES--NVSGKIVFSSEIDRFAKISYEANFPNHNLHGDITKIDA 143

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +D+P+HD+L+ GFPCQ FS AG
Sbjct: 144 KDVPNHDLLIGGFPCQAFSIAG 165


>gi|308126237|ref|ZP_05908633.2| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107574|gb|EFO45114.1| DNA (cytosine-5-)-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 426

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIRL  ++       +C F+SEI+ ++ +TY ANF      GDI KI  
Sbjct: 85  FTFIDLFAGIGGIRLPFQE----VGGKCVFTSEIDKFAQQTYLANFG-EYPKGDITKISA 139

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIP+HDVLLAGFPCQ FSQAG
Sbjct: 140 SDIPNHDVLLAGFPCQAFSQAG 161


>gi|317501747|ref|ZP_07959934.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896869|gb|EFV18953.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 499

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           ++  DLF G+GGIRL  E+      +E  C FSSEI  Y++K YQ  F N  ++GDI +I
Sbjct: 67  IRFIDLFAGLGGIRLGFEEGLREVGLEAKCVFSSEIKKYAIKAYQGYFGNEKVYGDITQI 126

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +T  IPD D LLAGFPCQPFS AG
Sbjct: 127 ETDTIPDFDFLLAGFPCQPFSSAG 150


>gi|308229518|gb|ADO24171.1| M.AciI [Arthrobacter citreus]
          Length = 703

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+  LF GIGG  L L+  ++  +    FSSEI+ ++ ++Y ANFPN  + GDI KI  
Sbjct: 22  YKVVSLFSGIGGFELGLK--YSSLSSHVIFSSEIDKFAQQSYLANFPNHNLVGDITKIDE 79

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           Q+IPDHD+L+ GFPCQ FS AG
Sbjct: 80  QEIPDHDILMGGFPCQAFSIAG 101



 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG RL LE+        C FSS+I+ Y+ +TY  NF      GDI KI +
Sbjct: 385 FSFIDLFSGIGGFRLALEK----NGGTCLFSSDIDKYARETYFNNFGEMPS-GDITKIAS 439

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           ++IP HD+L AGFPCQPFS AG
Sbjct: 440 ENIPFHDILCAGFPCQPFSIAG 461


>gi|224418923|ref|ZP_03656929.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|253827874|ref|ZP_04870759.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|313142438|ref|ZP_07804631.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|253511280|gb|EES89939.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
 gi|313131469|gb|EFR49086.1| DNA (cytosine-5-)-methyltransferase [Helicobacter canadensis MIT
          98-5491]
          Length = 328

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGGIR   E         C FSSEI+ ++ +TY+AN+      GDI KI+ 
Sbjct: 23 YTFIDLFAGIGGIRRGFE----IEGGTCVFSSEIDKFACQTYEANWGEKPS-GDITKIEA 77

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  D+LL GFPCQ FS AG
Sbjct: 78 CDIPKFDILLGGFPCQAFSIAG 99


>gi|118138268|pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
          Sequence Discrimination Of Dna Methyltransferase M.Hhai
          Length = 327

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|1171048|sp|P25263|MTC1_HERAU RecName: Full=Modification methylase HgiCI; Short=M.HgiCI;
          AltName: Full=Cytosine-specific methyltransferase HgiCI
 gi|515372|emb|CAA38933.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 420

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          MLK  DLF GIGG+RL  EQ  +   +E  C  SSEI+ ++  TY  NF +    GDI +
Sbjct: 1  MLKFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNF-HEQSQGDITQ 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  QD P  D LLAGFPCQPFS AG
Sbjct: 60 I--QDFPSFDFLLAGFPCQPFSYAG 82


>gi|256822924|ref|YP_003146887.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796463|gb|ACV27119.1| DNA-cytosine methyltransferase [Kangiella koreensis DSM 16069]
          Length = 419

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIRL  ++        C FSSE    +  TY+ NF     FGDI  + +
Sbjct: 97  FTFIDLFAGIGGIRLGFQK----YGGACVFSSEFEKAAQNTYKENFGEHP-FGDITTVPS 151

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           ++IP HD+LL GFPCQ FS AG
Sbjct: 152 ENIPKHDILLGGFPCQAFSVAG 173


>gi|269123998|ref|YP_003306575.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
 gi|268315324|gb|ACZ01698.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
           12112]
          Length = 438

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 55/84 (65%), Gaps = 2/84 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           +K  DLF G+GGIR+  EQ FN   +  EC FSSEI  +++ +Y   F +  I GDI +I
Sbjct: 17  IKFIDLFAGLGGIRIGFEQAFNTLGISTECVFSSEIKKHAILSYTKYFGDYKIHGDIKEI 76

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              DIPD D LLAGFPCQPFS AG
Sbjct: 77  SVDDIPDFDFLLAGFPCQPFSSAG 100


>gi|17863973|gb|AAL46998.1|AF448250_2 putative C-5 cytosine-specific DNA methylase [Bacteroides coprosuis
           DSM 18011]
          Length = 401

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 56/82 (68%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIRL  +        EC FSSEI+ ++ KTY +N+ +    GDI KIK 
Sbjct: 74  FKFIDLFAGIGGIRLPFQ----LNGGECVFSSEIDYHAQKTYYSNYGDYPS-GDITKIKA 128

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDHD+LLAGFPCQ FSQAG
Sbjct: 129 EDIPDHDILLAGFPCQAFSQAG 150


>gi|56461628|ref|YP_156909.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
 gi|56180638|gb|AAV83360.1| DNA cytosine methylase [Idiomarina loihiensis L2TR]
          Length = 419

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLF G+GGIRL  E+        C FSSEI+ ++  TY  N   T+ +GDI KI  
Sbjct: 99  IKFIDLFAGVGGIRLAFEKA----GAACVFSSEIDTHAQLTYFTNHG-TVPYGDITKIDA 153

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQPFS  G
Sbjct: 154 DSIPSHDILCAGFPCQPFSHIG 175


>gi|119493789|ref|ZP_01624358.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
 gi|119452484|gb|EAW33671.1| type II restriction enzyme HaeII [Lyngbya sp. PCC 8106]
          Length = 689

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGGIRL  E+       +C FSSE +  + +TY+ANF    + GDI  I  
Sbjct: 10 FTFIDLFAGIGGIRLPFEE----LGGKCVFSSEWDEAAQETYEANFGERPL-GDITTIDP 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP HD+LLAGFPCQ FS  G
Sbjct: 65 GSIPHHDILLAGFPCQAFSIIG 86


>gi|262402975|ref|ZP_06079535.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
 gi|262350474|gb|EEY99607.1| DNA-methyltransferase MKpn2kI [Vibrio sp. RC586]
          Length = 410

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIRL  ++   H    C F+SE + ++ KTY AN+      GDI +I  
Sbjct: 53  FTFIDLFAGIGGIRLPFQKLNGH----CVFTSEWDKFAQKTYLANYGEMPS-GDITQISA 107

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DI DHD+LL GFPCQ FSQAG
Sbjct: 108 KDIKDHDILLGGFPCQAFSQAG 129


>gi|161761159|pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine
          Dna Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|127455|sp|P05102|MTH1_HAEPH RecName: Full=Modification methylase HhaI; Short=M.HhaI; AltName:
          Full=Cytosine-specific methyltransferase HhaI
 gi|1065144|pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase,
          Dna And S-Adenosyl-L-Homocysteine
 gi|1942412|pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
          Unmodified Dna And Adohcy
 gi|1942415|pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
          Dna And Adohcy
 gi|2392799|pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
          Hemimethylated Dna And Adohcy
 gi|3660437|pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
          And Dna Containing 4'-Thio-2'deoxycytidine At The
          Target
 gi|4139672|pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139675|pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4139680|pdb|9MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
 gi|4558252|pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
          And Hemimethylated Dna Containing
          5,6-Dihydro-5-Azacytosine At The Target
 gi|4699814|pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
          Formed In The Presence Of A Short Nonpsecific Dna
          Oligonucleotide
 gi|24158912|pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms
          A Covalent Complex With Dna Methyltransferase
 gi|52695513|pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
          Abasic South Carbocyclic Sugar At Its Target Site
 gi|85544385|pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
          Oligonucleotide Containing 2-Aminopurine Adjacent To
          The Target Base (Pcgc:gmgc) And Sah
 gi|85544388|pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
          Containing 2-Aminopurine Opposite To The Target Base (
          Gcgc:gmpc) And Sah
 gi|85544391|pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
          Containing 2-Aminopurine Outside The  Recognition
          Sequence (Paired With G) And Sah
 gi|116667789|pdb|2HR1|A Chain A, Ternary Structure Of Wt M.Hhai C5-Cytosine Dna
          Methyltransferase With Unmodified Dna And Adohcy
 gi|157831356|pdb|1HMY|A Chain A, Crystal Structure Of The Hhal Dna Methyltransferase
          Complexed With S-Adenosyl-L-Methionine
 gi|290560089|pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing
          A Propane Diol In Place Of The Deoxycytidine Residue
          Targeted For Methylation.
 gi|148949|gb|AAA24989.1| DNA methylase [Haemophilus haemolyticus]
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|160877870|pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine
          Dna Methyltransferase, With Unmodified Dna And Adohcy
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|255066464|ref|ZP_05318319.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298369378|ref|ZP_06980696.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|255049344|gb|EET44808.1| modification methylase EcoRII [Neisseria sicca ATCC 29256]
 gi|298283381|gb|EFI24868.1| modification methylase EcoRII [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 357

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGGIRL  E+       +C FSSEI+ ++  TYQA + +    GDI +I  
Sbjct: 50  FRFIDLFAGIGGIRLPFEE----LGGQCVFSSEIDKFAKTTYQAFYGDVP-HGDITQIAP 104

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            +IPD D+LLAGFPCQPFSQAG
Sbjct: 105 SEIPDFDLLLAGFPCQPFSQAG 126


>gi|50513617|pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
          Methyltransferase: An Insight Into Protein-Protein
          Interactions
 gi|50513618|pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
          Methyltransferase: An Insight Into Protein-Protein
          Interactions
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|189339547|pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With
          13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|189096047|pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With
          13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|158431504|pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
          Methyltransferase With Unmodified Dna And Adohcy
          Length = 327

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|1709152|sp|P50185|MTD5_DACSA RecName: Full=Modification methylase DsaV; Short=M.DsaV; AltName:
          Full=Cytosine-specific methyltransferase DsaV
 gi|505694|gb|AAA86046.1| DsaV methyltransferase [Dactylococcopsis salina]
          Length = 351

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG+R+  E+       +C FSSEI+ +  +TY+ANF      GDI K+  
Sbjct: 6  LKFIDLFAGIGGMRIPFEE----LGGKCVFSSEIDKHCQRTYEANFGEMPT-GDITKLSA 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP HD+LLAGFPCQ FSQ G
Sbjct: 61 DSIPYHDLLLAGFPCQAFSQGG 82


>gi|166368121|ref|YP_001660394.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
 gi|166090494|dbj|BAG05202.1| C-5 cytosine-specific DNA-methylase [Microcystis aeruginosa
          NIES-843]
          Length = 347

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G+GG R+ LE    +   +C FSSEI+P+S K Y AN+ +     DI K++
Sbjct: 1  MWTFIDLFAGVGGFRIALE----NLGCQCVFSSEIDPHSQKVYLANYGHLPDNQDIRKLE 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +PDHD+L  GFPCQ FS AG
Sbjct: 57 AKTVPDHDILCGGFPCQAFSIAG 79


>gi|12084381|pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
          Mutant (T250g) In Complex With Dna And Adohcy
 gi|85544394|pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
          Oligonucleotide Containing 2-Aminopurine As A Target
          Base (Gpgc:gmgc) And Sah
          Length = 327

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS +G
Sbjct: 67 KTIPDHDILCAGFPCQAFSISG 88


>gi|300869073|ref|ZP_07113674.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
          PCC 6506]
 gi|300332930|emb|CBN58870.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
          PCC 6506]
          Length = 345

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG R   E        EC FS E++ +  + Y  NF N + FGDI  +  
Sbjct: 1  MKFIDLFAGIGGFRQGFENA----GFECVFSCEVDKHCREVYSNNF-NEVPFGDIKDVNP 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I D DVL+AGFPCQPFS  G
Sbjct: 56 HEIEDFDVLVAGFPCQPFSICG 77


>gi|189096062|pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex
          With 13mer Gcgc-Gmgc Oligonucleotide And Sah
          Length = 327

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFPCQ FS  G
Sbjct: 67 KTIPDHDILCAGFPCQAFSIQG 88


>gi|294661528|ref|YP_003579981.1| hypothetical protein KP-KP15_gp115 [Klebsiella phage KP15]
 gi|292660689|gb|ADE34937.1| hypothetical protein [Klebsiella phage KP15]
          Length = 308

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DL  G+GG+RL  ++ F    VEC  +SEI+ ++ +TY  N+ +  I GDI  I  
Sbjct: 1  MKIIDLCAGVGGVRLGFDKAFG--GVECLLTSEIDKHAQQTYADNWGDENIQGDIFTIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NDVPDHDILLAGFPCQAFSKAG 80


>gi|255279955|ref|ZP_05344510.1| modification methylase EcoRII [Bryantella formatexigens DSM
          14469]
 gi|255269728|gb|EET62933.1| modification methylase EcoRII [Bryantella formatexigens DSM
          14469]
          Length = 311

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG+             +  ++++ + Y+V+TY+ANF   ++ GDI +I  
Sbjct: 1  MKVVSLFSGIGGLDRGF----LDTGYDVIWANDFDKYAVQTYKANFGEHIVLGDINEIPL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPD DVL+ GFPCQPFS  G
Sbjct: 57 DEIPDCDVLIGGFPCQPFSMMG 78


>gi|229126345|ref|ZP_04255362.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228657116|gb|EEL12937.1| Cytosine-specific methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 363

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF G GG+ L LEQ       E  ++++++ ++V+ Y+ N    ++ GDI KI  
Sbjct: 8  LKVVSLFSGCGGLDLGLEQA----GFEILWANDVDKHAVEIYKHNIG-KIVEGDITKISE 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  DVL AGFPCQPFS AG
Sbjct: 63 EEIPSCDVLTAGFPCQPFSSAG 84


>gi|167746073|ref|ZP_02418200.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
 gi|167654588|gb|EDR98717.1| hypothetical protein ANACAC_00768 [Anaerostipes caccae DSM 14662]
          Length = 312

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LFCG GG+    ++T         ++++ + Y+V+TY+ANF + +I GDI +I+ 
Sbjct: 1  MRVLSLFCGCGGLDKGFDET----GYNIVWANDFDKYAVETYKANFGDNVILGDINEIEL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P+ DVL+ GFPCQPFS  G
Sbjct: 57 NSLPEFDVLIGGFPCQPFSMMG 78


>gi|255262721|ref|ZP_05342063.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
 gi|255105056|gb|EET47730.1| cytosine-specific methyltransferase NlaX [Thalassiobium sp. R2A62]
          Length = 421

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGGIR+  ++   H    C FSSE + +S K+Y AN+      GDI +I  
Sbjct: 80  FRFIDLFAGIGGIRMPFQELGGH----CVFSSEWDKFSQKSYAANYGEVPQ-GDITQIAA 134

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIP+HD+LLAGFPCQ FSQAG
Sbjct: 135 NDIPEHDLLLAGFPCQAFSQAG 156


>gi|126658057|ref|ZP_01729209.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
 gi|126620695|gb|EAZ91412.1| DNA cytosine methylase [Cyanothece sp. CCY0110]
          Length = 358

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 5/78 (6%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           DLF GIGG+R+   ++++    +C FSSE + Y+ +TYQ NF     FGDI KI  QDIP
Sbjct: 44  DLFAGIGGMRMGFSRSYS----QCVFSSEWDKYAQQTYQFNFGEKP-FGDINKINPQDIP 98

Query: 66  DHDVLLAGFPCQPFSQAG 83
           DHD+L+ GFPCQPFS  G
Sbjct: 99  DHDILIGGFPCQPFSTIG 116


>gi|124024750|ref|YP_001013866.1| site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
 gi|123959818|gb|ABM74601.1| Site-specific DNA methylase [Prochlorococcus marinus str. NATL1A]
          Length = 305

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGGIR+  E+       EC FSSE + YS  TY+ANF   +  GDI KI  
Sbjct: 5  FRFIDLFAGIGGIRIPFEE----LGGECVFSSEWDKYSQITYEANFG-EIPKGDITKINA 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP HD+L+ GFPCQ FSQAG
Sbjct: 60 EDIPKHDLLVGGFPCQAFSQAG 81


>gi|219724141|ref|YP_002477179.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
          burgdorferi 156a]
 gi|225575842|ref|YP_002724642.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
 gi|219693145|gb|ACL34349.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Borrelia
          burgdorferi 156a]
 gi|225546742|gb|ACN92742.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 118a]
          Length = 311

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+ L++    + +EC FS +I+ Y+   YQ NF +   +GD+ +I 
Sbjct: 1  MFKFIDLFCGIGGFRVALQK----QGMECVFSCDIDKYAQTAYQKNFGDKP-YGDVTEIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP H++L AGFPCQPFS +G
Sbjct: 56 EDKIPRHEILCAGFPCQPFSISG 78


>gi|187923141|ref|YP_001894783.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714335|gb|ACD15559.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 426

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK 58
            +  DLF GIGGIR+  E        +C F+SE N +S KTY+ N+P      + GDI  
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGDCVFTSEWNDFSTKTYRENYPGGGEHALIGDIVS 126

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +D+P HDVLL GFPCQPFS AG
Sbjct: 127 FPAEDVPSHDVLLGGFPCQPFSIAG 151


>gi|254410261|ref|ZP_05024041.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183297|gb|EDX78281.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 384

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF GIGG R+  EQT      +C +S EI+P   + Y  NF +    GDI +I  
Sbjct: 4  IKFIDLFAGIGGFRIAFEQT----GYKCVYSCEIDPKCQEVYFNNFLDKP-AGDIREIDI 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPD DVL AGFPCQPFS  G
Sbjct: 59 NSIPDFDVLTAGFPCQPFSICG 80


>gi|227485931|ref|ZP_03916247.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227235976|gb|EEI85991.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 318

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+  E    +   +C FSS+I+ Y+ +TY  NF      GDI K+ 
Sbjct: 1  MYKFIDLFCGIGGFRIAFE----NLGCKCVFSSDIDVYARETYNDNFG-EYPAGDIIKVD 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + IP+HD+L AGFPCQPFS AG
Sbjct: 56 AETIPNHDILCAGFPCQPFSIAG 78


>gi|309808410|ref|ZP_07702309.1| putative modification methylase HhaI [Lactobacillus iners LactinV
          01V1-a]
 gi|308168238|gb|EFO70357.1| putative modification methylase HhaI [Lactobacillus iners LactinV
          01V1-a]
          Length = 198

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL LE        +C +S+E + ++ +TY  NF +T   GDI ++  
Sbjct: 12 YKFIDLFAGIGGFRLALES----FGAKCVYSNEWDKFAQETYHMNFGDTP-EGDITQVDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IPDHD+L AGFPCQPFS +G
Sbjct: 67 TRIPDHDILCAGFPCQPFSISG 88


>gi|30019096|ref|NP_830727.1| Type II restriction-modification system methylation subunit
          [Bacillus cereus ATCC 14579]
 gi|29894639|gb|AAP07928.1| Type II restriction-modification system methylation subunit
          [Bacillus cereus ATCC 14579]
          Length = 373

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF G GG+ L LEQ       E  ++++++ ++V+ Y+ N    ++ GDI KI  
Sbjct: 18 LKVVSLFSGCGGLDLGLEQA----GFEILWANDVDKHAVEIYKHNIG-KIVEGDITKISE 72

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP  DVL AGFPCQPFS AG
Sbjct: 73 EEIPSCDVLTAGFPCQPFSSAG 94


>gi|153870185|ref|ZP_01999636.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152073352|gb|EDN70367.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 235

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF GIGGIRL  E        +C FSSE + Y+  TY+ANF      GDI KI  
Sbjct: 4  FEFIDLFAGIGGIRLGFES----IGGKCVFSSEWDKYAQDTYEANFGERP-EGDITKINA 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IP+H++LL GFPCQ FS  G
Sbjct: 59 KTIPEHNILLGGFPCQAFSICG 80


>gi|118576810|ref|YP_876553.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
 gi|118195331|gb|ABK78249.1| C-5 cytosine-specific DNA methylase [Cenarchaeum symbiosum A]
          Length = 325

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLFCGIGG+R+ LE+        C +S EIN  + KTY+ANF   +   DI ++  
Sbjct: 5  IRFIDLFCGIGGMRIGLERA----GGRCVYSCEINEPARKTYEANF-EPVTDKDITEVDA 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HDVL AGFPCQPFS AG
Sbjct: 60 GSIPNHDVLAAGFPCQPFSLAG 81


>gi|288559284|ref|YP_003422770.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288541994|gb|ADC45878.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 339

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG RL  E        +C FSS+I+ ++ +TY  NF      GDI++I  
Sbjct: 30  FTFIDLFSGIGGFRLAFES----VGGKCVFSSDIDKWANETYYMNFG-EYPHGDISEIPA 84

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L AGFPCQPFS  G
Sbjct: 85  NQIPDHDILCAGFPCQPFSIGG 106


>gi|293363234|ref|ZP_06610118.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris
          A21JP2]
 gi|292553093|gb|EFF41842.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma alligatoris
          A21JP2]
          Length = 428

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+GGIR+  EQ    + +  EC F+SEI  +++K Y+ NF ++ I GDI+KI
Sbjct: 13 IKFIDLFAGLGGIRIGFEQALKDKKIKSECVFTSEIKKHAIKAYKNNFKDSNINGDISKI 72

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + IP  D LLAGFPCQPFS AG
Sbjct: 73 DLEKIPYFDYLLAGFPCQPFSSAG 96


>gi|224796590|ref|YP_002641667.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|223929176|gb|ACN23896.1| DNA-cytosine methyltransferase [Borrelia burgdorferi 64b]
 gi|312149869|gb|ADQ29935.1| DNA-cytosine methyltransferase [Borrelia burgdorferi N40]
          Length = 324

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R+ L++    + +EC FS +I+ Y+   YQ NF +   +GD+ +I 
Sbjct: 14 MFKFIDLFCGIGGFRVALQK----QGMECVFSCDIDKYAQTAYQKNFGDKP-YGDVTEIP 68

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP H++L AGFPCQPFS +G
Sbjct: 69 EDKIPRHEILCAGFPCQPFSISG 91


>gi|319776347|ref|YP_004138835.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3047]
 gi|329123500|ref|ZP_08252064.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
 gi|317450938|emb|CBY87164.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3047]
 gi|327471082|gb|EGF16537.1| modification methylase HaeII [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIRL  E        +  FSSE + Y+   Y+ NF     FGDI  I  
Sbjct: 4  YKTIDLFAGIGGIRLGFEA----FGCKNVFSSEWDKYAQSMYEVNFGEKP-FGDINDISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+LLAGFPCQPFS AG
Sbjct: 59 SDIPDHDILLAGFPCQPFSIAG 80


>gi|12229852|sp|O30868|MTH2_HAEAE RecName: Full=Modification methylase HaeII; Short=M.HaeII;
          AltName: Full=Cytosine-specific methyltransferase HaeII
 gi|2425087|gb|AAB70829.1| HaeII methylase [Haemophilus aegyptius ATCC 11116]
          Length = 318

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIRL  E        +  FSSE + Y+   Y+ NF     FGDI  I  
Sbjct: 4  YKTIDLFAGIGGIRLGFEA----FGCKNVFSSEWDKYAQSMYEVNFGEKP-FGDINDISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+LLAGFPCQPFS AG
Sbjct: 59 SDIPDHDILLAGFPCQPFSIAG 80


>gi|148826843|ref|YP_001291596.1| modification methylase HaeII [Haemophilus influenzae PittGG]
 gi|148718085|gb|ABQ99212.1| modification methylase HaeII [Haemophilus influenzae PittGG]
          Length = 318

 Score =  132 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIRL  E        +  FSSE + Y+   Y+ NF     FGDI  I  
Sbjct: 4  YKTIDLFAGIGGIRLGFEA----FGCKNVFSSEWDKYAQSMYEVNFGEKP-FGDINDISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+LLAGFPCQPFS AG
Sbjct: 59 SDIPDHDILLAGFPCQPFSIAG 80


>gi|68250112|ref|YP_249224.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
 gi|68058311|gb|AAX88564.1| modification methylase HaeII [Haemophilus influenzae 86-028NP]
          Length = 318

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIRL  E        +  FSSE + Y+   Y+ NF     FGDI  I  
Sbjct: 4  YKTIDLFAGIGGIRLGFEA----FGCKNVFSSEWDKYAQSMYEVNFGEKP-FGDINDISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+LLAGFPCQPFS AG
Sbjct: 59 SDIPDHDILLAGFPCQPFSIAG 80


>gi|296159065|ref|ZP_06841892.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
 gi|295890626|gb|EFG70417.1| DNA-cytosine methyltransferase [Burkholderia sp. Ch1-1]
          Length = 426

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK 58
            +  DLF GIGGIR+  E        +C F+SE N +S KTY+ N+P      + GDI  
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGDCVFTSEWNDFSTKTYRENYPGDGEHALIGDIVS 126

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +++P HDVLL GFPCQPFS AG
Sbjct: 127 FPAEEVPGHDVLLGGFPCQPFSIAG 151


>gi|294788070|ref|ZP_06753314.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
 gi|294484363|gb|EFG32046.1| modification methylase EcoRII [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK  DLF G+GGIR   +Q F  R +E  FSSEI+ ++ +TY AN+ + + +GDI +I+ 
Sbjct: 41  LKAIDLFAGVGGIRTGFQQAFGER-IEFVFSSEIDKFARQTYAANY-HEIPYGDITQIQA 98

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            ++P HD++LAGFPCQ FS AG
Sbjct: 99  HEVPTHDIILAGFPCQAFSVAG 120


>gi|15676920|ref|NP_274067.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|7226272|gb|AAF41432.1| modification methylase NlaIV [Neisseria meningitidis MC58]
 gi|325136241|gb|EGC58849.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325202033|gb|ADY97487.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          M01-240149]
 gi|325208214|gb|ADZ03666.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          NZ-05/33]
          Length = 423

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|154484133|ref|ZP_02026581.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
          27560]
 gi|149735175|gb|EDM51061.1| hypothetical protein EUBVEN_01844 [Eubacterium ventriosum ATCC
          27560]
          Length = 366

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           +  DLF GIGGIR   +  F  +N++  F SE + Y+ KTY+AN+ +   I GDI KI 
Sbjct: 14 YRAIDLFAGIGGIRKGFDNAFG-KNIDTVFVSEWDEYAQKTYRANYKDKFEIAGDITKID 72

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+ D+ LAGFPCQ FS AG
Sbjct: 73 EKDIPEFDICLAGFPCQAFSLAG 95


>gi|167854495|ref|ZP_02477276.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase
          [Haemophilus parasuis 29755]
 gi|219872138|ref|YP_002476513.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA
          methylase [Haemophilus parasuis SH0165]
 gi|167854250|gb|EDS25483.1| cyclic 3',5'-adenosine monophosphate phosphodiesterase
          [Haemophilus parasuis 29755]
 gi|219692342|gb|ACL33565.1| DNA-cytosine methyltransferase/C-5 cytosine-specific DNA
          methylase [Haemophilus parasuis SH0165]
          Length = 320

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLI-F 53
           ++  LF G GG+ L  +  F+  N        E  ++++IN  + KT + NFP T +  
Sbjct: 5  FRVISLFSGAGGLDLGFKGGFDFLNKRYDENPFEVVWANDINEKACKTLKHNFPETPVVC 64

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          GDI  +    +P+ DV+L GFPCQ FS AG
Sbjct: 65 GDITLVDKSTLPEADVVLGGFPCQDFSLAG 94


>gi|161870123|ref|YP_001599293.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          053442]
 gi|225075874|ref|ZP_03719073.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
          NRL30031/H210]
 gi|296313674|ref|ZP_06863615.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
          43768]
 gi|161595676|gb|ABX73336.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis
          053442]
 gi|224952820|gb|EEG34029.1| hypothetical protein NEIFLAOT_00897 [Neisseria flavescens
          NRL30031/H210]
 gi|296839734|gb|EFH23672.1| DNA (cytosine-5-)-methyltransferase [Neisseria polysaccharea ATCC
          43768]
          Length = 423

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|193216537|ref|YP_001999779.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
          arthritidis 158L3-1]
 gi|193001860|gb|ACF07075.1| cytosine-specific methyltransferase, related to HhaI [Mycoplasma
          arthritidis 158L3-1]
          Length = 327

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG R+ LE        +C +S+E + ++ + Y+ NF N +  GDI  I  
Sbjct: 12 LKFIDLFAGLGGFRIALESC----GAKCVYSNEWDKHAQEVYKMNF-NEIPDGDITLINE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHDVL AGFPCQ FS +G
Sbjct: 67 NDIPDHDVLCAGFPCQAFSISG 88


>gi|325130383|gb|EGC53149.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          OX99.30304]
          Length = 425

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|218247578|ref|YP_002372949.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218168056|gb|ACK66793.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 727

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL  EQ       +C +S EIN Y  K Y  NF       D+ KI  
Sbjct: 6  FKFIDLFAGIGGFRLAFEQA----QYQCVYSCEINEYCQKVYYNNFDECPD-NDVTKINP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P+ DVL AGFPCQPFS  G
Sbjct: 61 HTLPNFDVLTAGFPCQPFSICG 82


>gi|56751653|ref|YP_172354.1| hypothetical protein syc1644_d [Synechococcus elongatus PCC 6301]
 gi|81301269|ref|YP_401477.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
 gi|56686612|dbj|BAD79834.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170150|gb|ABB58490.1| DNA-cytosine methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 424

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 10/88 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
               DLF GIGG R+  E+       +C F+SE +  + KTY+ANF      I GDI +I
Sbjct: 71  FTFIDLFAGIGGTRMGFERA----GGKCVFTSEWDTSAQKTYRANFSVDEHPIIGDIHEI 126

Query: 60  KTQD----IPDHDVLLAGFPCQPFSQAG 83
             +     +P+HDVL+AGFPCQPFS AG
Sbjct: 127 TVEGKWDLLPEHDVLVAGFPCQPFSIAG 154


>gi|240128365|ref|ZP_04741026.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae SK-93-1035]
 gi|268686763|ref|ZP_06153625.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|268627047|gb|EEZ59447.1| DNA modification methylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 423

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|254673505|emb|CBA08927.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
          alpha275]
          Length = 273

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|304387455|ref|ZP_07369646.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|304338548|gb|EFM04667.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
          Length = 273

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|189439219|ref|YP_001954300.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|189427654|gb|ACD97802.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 323

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 4  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D+LLAGFPCQPFS AG
Sbjct: 63 EHDVPDIDLLLAGFPCQPFSIAG 85


>gi|59801103|ref|YP_207815.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA 1090]
 gi|121634967|ref|YP_975212.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|194098793|ref|YP_002001855.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae NCCP11945]
 gi|239999085|ref|ZP_04719009.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae 35/02]
 gi|240014008|ref|ZP_04720921.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae DGI18]
 gi|240016449|ref|ZP_04722989.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA6140]
 gi|240080568|ref|ZP_04725111.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA19]
 gi|240113063|ref|ZP_04727553.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae MS11]
 gi|240115818|ref|ZP_04729880.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID18]
 gi|240118116|ref|ZP_04732178.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID1]
 gi|240121574|ref|ZP_04734536.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID24-1]
 gi|240123666|ref|ZP_04736622.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae PID332]
 gi|240125856|ref|ZP_04738742.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae SK-92-679]
 gi|254493863|ref|ZP_05107034.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440365|ref|ZP_05794181.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae DGI2]
 gi|268594923|ref|ZP_06129090.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268596698|ref|ZP_06130865.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268599147|ref|ZP_06133314.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268601493|ref|ZP_06135660.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268603831|ref|ZP_06137998.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268682295|ref|ZP_06149157.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268684453|ref|ZP_06151315.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043662|ref|ZP_06569378.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|293398965|ref|ZP_06643130.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717998|gb|AAW89403.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae FA 1090]
 gi|120866673|emb|CAM10425.1| DNA modification methylase [Neisseria meningitidis FAM18]
 gi|193934083|gb|ACF29907.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae NCCP11945]
 gi|226512903|gb|EEH62248.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548312|gb|EEZ43730.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|268550486|gb|EEZ45505.1| DNA modification methylase [Neisseria gonorrhoeae FA19]
 gi|268583278|gb|EEZ47954.1| DNA modification methylase [Neisseria gonorrhoeae MS11]
 gi|268585624|gb|EEZ50300.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268587962|gb|EEZ52638.1| DNA modification methylase [Neisseria gonorrhoeae PID1]
 gi|268622579|gb|EEZ54979.1| DNA modification methylase [Neisseria gonorrhoeae PID332]
 gi|268624737|gb|EEZ57137.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012125|gb|EFE04114.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|291610379|gb|EFF39489.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164377|gb|ADV07918.1| putative DNA modification methylase (N.MgoV) [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 423

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|23466029|ref|NP_696632.1| modification methylase very EcoRII
          (cytosine-specificmethyltransferase [Bifidobacterium
          longum NCC2705]
 gi|23326750|gb|AAN25268.1| modification methylase very similar to EcoRII
          (cytosine-specificmethyltransferase [Bifidobacterium
          longum NCC2705]
          Length = 323

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 4  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D+LLAGFPCQPFS AG
Sbjct: 63 EHDVPDIDLLLAGFPCQPFSIAG 85


>gi|239621327|ref|ZP_04664358.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515788|gb|EEQ55655.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 343

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           ++I DLF GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+ 
Sbjct: 24  IRIADLFAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVD 82

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             D+PD D+LLAGFPCQPFS AG
Sbjct: 83  EHDVPDIDLLLAGFPCQPFSIAG 105


>gi|226942156|ref|YP_002797230.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|226717083|gb|ACO76221.1| Cytosine-specific methyltransferase [Laribacter hongkongensis
           HLHK9]
          Length = 420

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
               DLF GIGGIR    Q F      C F+SE + Y+ KTY  N       + GDI ++
Sbjct: 71  FTFIDLFAGIGGIR----QAFEDVGGRCVFTSEWDSYAQKTYAENHRRDAHALNGDITQV 126

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              DIP HDVLLAGFPCQPFS AG
Sbjct: 127 GAADIPAHDVLLAGFPCQPFSIAG 150


>gi|218768275|ref|YP_002342787.1| DNA modification methylase [Neisseria meningitidis Z2491]
 gi|121052283|emb|CAM08611.1| DNA modification methylase [Neisseria meningitidis Z2491]
          Length = 423

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|299536257|ref|ZP_07049570.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
 gi|298728243|gb|EFI68805.1| DNA-methyltransferase MKpn2kI [Lysinibacillus fusiformis ZC1]
          Length = 403

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 5/80 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF GIGGIRL  +    +    C F+SE + ++ KTY+ANF +    GDI KI  ++
Sbjct: 74  MIDLFAGIGGIRLAFQSQGGY----CCFTSEWDKFAAKTYRANFGDEPN-GDITKINEKE 128

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           IPDH++LLAGFPCQ FSQAG
Sbjct: 129 IPDHNILLAGFPCQAFSQAG 148


>gi|327198092|ref|YP_004306459.1| gp47 [Burkholderia phage KL3]
 gi|310657226|gb|ADP02340.1| gp47 [Burkholderia phage KL3]
          Length = 422

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/83 (53%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +  DLF GIGGIRL  E        EC F+SE N +S KTY  NF +   F GDI    
Sbjct: 70  FRFIDLFAGIGGIRLGFEA----HGGECVFTSEWNDFSKKTYVDNFGDHHPFIGDIVPFA 125

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            + +P HDVLLAGFPCQPFS AG
Sbjct: 126 AESVPTHDVLLAGFPCQPFSIAG 148


>gi|159026805|emb|CAO86650.1| ngoBIM [Microcystis aeruginosa PCC 7806]
          Length = 331

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF G+GG RL +EQ    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFIDLFSGLGGFRLAIEQVCRPKNLESDCVFSCDIDKDAQAIYHANFGDQPR-GDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|238783073|ref|ZP_04627100.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
 gi|238716074|gb|EEQ08059.1| Modification methylase EcoRII [Yersinia bercovieri ATCC 43970]
          Length = 475

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE NPY+V+TY+AN+   P+   F  DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNPYAVRTYKANWYCDPDEHRFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EITLSETAEISDEEAYKYIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|12229863|sp|Q59605|MTB5_NEIGO RecName: Full=Modification methylase NgoBV; Short=M.NgoBV;
          AltName: Full=Cytosine-specific methyltransferase
          NgoBV; Short=M.NgoV
 gi|1165242|gb|AAA86268.1| M.NgoV DNA methylase [Neisseria gonorrhoeae]
          Length = 423

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|110643908|ref|YP_671638.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
 gi|110345500|gb|ABG71737.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
          Length = 315

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+  LF G GG+ L  +        +  ++++I+  +V TY+ N  + ++  D+++I 
Sbjct: 1  MMKVVSLFSGAGGLDLGFKNA----GFQIVWANDIDSDAVLTYKKNIGDHIVLKDLSQID 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
            DIPD DV++ GFPCQ FSQA
Sbjct: 57 MDDIPDCDVVIGGFPCQGFSQA 78


>gi|261400634|ref|ZP_05986759.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
          23970]
 gi|313668389|ref|YP_004048673.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|1709164|sp|P50182|MTN4_NEILA RecName: Full=Modification methylase NlaIV; Short=M.NlaIV;
          AltName: Full=Cytosine-specific methyltransferase NlaIV
 gi|476227|gb|AAA53237.1| M.NlaIV [Neisseria lactamica]
 gi|269209540|gb|EEZ75995.1| DNA (cytosine-5-)-methyltransferase [Neisseria lactamica ATCC
          23970]
 gi|313005851|emb|CBN87307.1| DNA modification methylase [Neisseria lactamica 020-06]
          Length = 423

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF G+ GIR   EQ    ++V  +C F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSGMSGIRKGFEQACRKQSVACKCVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T DIPD D+LLAGFPCQ FS AG
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFAG 87


>gi|282899236|ref|ZP_06307209.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195872|gb|EFA70796.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
          Length = 422

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M++  DLF GIGG+RL  +Q  +      EC  SSEI+  +V+TY+ NF +    GDI +
Sbjct: 1  MIRFIDLFAGIGGMRLGFQQACDVLGVEYECVLSSEIDKKAVETYKINFDDQPR-GDIRE 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    +P+ D +LAGFPCQPFS AG
Sbjct: 60 IDI--MPEFDFMLAGFPCQPFSYAG 82


>gi|296282358|ref|ZP_06860356.1| DNA-cytosine methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 439

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI- 59
            +  DLF GIGG+R+  +    H    C F+SE + ++ +TY+ NF  N  + GD+ +  
Sbjct: 90  FRFIDLFAGIGGLRIGFQGIGGH----CVFTSEWDRFAQETYRVNFRDNHKLHGDVREFA 145

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQAG 83
              + IP+HDVLL GFPCQPFS AG
Sbjct: 146 ENPELIPEHDVLLGGFPCQPFSLAG 170


>gi|228469904|ref|ZP_04054843.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
 gi|228308539|gb|EEK17327.1| cytosine-specific methyltransferase NlaX [Porphyromonas uenonis
           60-3]
          Length = 395

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------FPNTLIF 53
           L   DLF GIGG  L +    +    +C F+SE + Y+ +TY+AN        F   L  
Sbjct: 34  LTFIDLFAGIGGFHLAM----HSVGAQCVFASEWDQYARQTYEANYRKLAPELFSRGLFA 89

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI K+    IP  D+L AGFPCQPFS AG
Sbjct: 90  GDITKVDPASIPPFDILCAGFPCQPFSVAG 119


>gi|212716092|ref|ZP_03324220.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661459|gb|EEB22034.1| hypothetical protein BIFCAT_01005 [Bifidobacterium catenulatum DSM
           16992]
          Length = 453

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
            +  DLF GIGGIR        H      FSSE N +S +TY+ N+     + GDI K+ 
Sbjct: 84  FRTIDLFAGIGGIRRGFASAGGHA----VFSSEWNEFSARTYRTNYGFTEQMAGDITKVD 139

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPD DV+LAGFPCQPFS AG
Sbjct: 140 VDDIPDCDVVLAGFPCQPFSVAG 162


>gi|312281368|ref|YP_004022731.1| DNA-cytosine methyltransferase [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181897|gb|ADQ42066.1| DNA-cytosine methyltransferase [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 319

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +++  LF G+GGI L  +Q       +  ++++I+ Y+  TY++NFP   L+ GDI  I 
Sbjct: 4  IRVVSLFSGVGGICLAFKQA----GFDVIWANDIDKYACITYRSNFPTVELVEGDIQSID 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + +IP+ D++ AGFPCQPFS AG
Sbjct: 60 SNNIPECDIITAGFPCQPFSIAG 82


>gi|320331203|gb|EFW87160.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882725|gb|EGH16874.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 420

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +  DLF GIGGIR+  E        EC F+SE N +S KTY  N+ +   F GDI    
Sbjct: 69  FRFVDLFAGIGGIRMGFEA----HGGECVFTSEWNDFSKKTYIENYGDRHQFVGDIVPFP 124

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +D+P+HDVLL GFPCQPFS AG
Sbjct: 125 AEDVPNHDVLLGGFPCQPFSIAG 147


>gi|172039424|ref|YP_001805925.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
 gi|171700878|gb|ACB53859.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
          Length = 729

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E+        C +S EIN +  + Y  NF   L   DI KI  
Sbjct: 6  LKFIDLFAGIGGFRLAFEKA----GYHCVYSCEINDHCRQVYYDNFG-ELPDQDITKIIP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPD D+L AGFPCQPFS  G
Sbjct: 61 KNIPDFDILTAGFPCQPFSICG 82


>gi|209520785|ref|ZP_03269531.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
 gi|209498782|gb|EDZ98891.1| DNA-cytosine methyltransferase [Burkholderia sp. H160]
          Length = 432

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 50/91 (54%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---------TLI 52
            +  DLF GIGGIR+  E        EC F+SE N +S +TY+ N+             +
Sbjct: 71  FRFIDLFAGIGGIRMGFE----THGGECVFTSEWNEFSTRTYRENYGENAGSGTDSAHAL 126

Query: 53  FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            GDI     +D+P HDVLL GFPCQPFS AG
Sbjct: 127 IGDIVAFPAEDVPSHDVLLGGFPCQPFSIAG 157


>gi|319644454|ref|ZP_07998887.1| hypothetical protein HMPREF9011_04490 [Bacteroides sp. 3_1_40A]
 gi|317384095|gb|EFV65072.1| hypothetical protein HMPREF9011_04490 [Bacteroides sp. 3_1_40A]
          Length = 139

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR  LE   +      EC F+SEI  +++K  + N PN LI GDI ++
Sbjct: 5  IKFIDLFAGIGGIRCGLELAAHEAGYKTECVFTSEIKKHAIKVLKQNHPNELINGDITQV 64

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IPD D+  AGFPCQ FS  G
Sbjct: 65 NEKEIPDFDICCAGFPCQSFSGGG 88


>gi|238917714|ref|YP_002931231.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
          27750]
 gi|238873074|gb|ACR72784.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
          27750]
          Length = 311

 Score =  130 bits (328), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+   F G+GG+             +  ++++ + Y+V+TY+ANF   ++ GDI +I  
Sbjct: 1  MKVVSFFSGLGGLDKGF----VDTGYDIIWANDFDKYAVQTYKANFGEHIVLGDINEIPL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPD D+L+ GFPCQPFS  G
Sbjct: 57 EEIPDCDILIGGFPCQPFSMMG 78


>gi|46581246|ref|YP_012054.1| type II DNA modification methyltransferase [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46450667|gb|AAS97314.1| type II DNA modification methyltransferase, putative
          [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234912|gb|ADP87766.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 358

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
              DLF GIGGIRL  E         C  S+E + Y+ KTY+A F  +  F        
Sbjct: 7  FSFIDLFAGIGGIRLGFEAA----GGRCVMSAEYDKYAQKTYRAFFGESPDFSEIMSVSP 62

Query: 54 -GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI K+    +PDHDVL  GFPCQPFS AG
Sbjct: 63 PGDITKLPPHLVPDHDVLTGGFPCQPFSLAG 93


>gi|119510471|ref|ZP_01629604.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
 gi|119464893|gb|EAW45797.1| DNA cytosine methylase [Nodularia spumigena CCY9414]
          Length = 727

 Score =  130 bits (328), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGG RL  E+     + EC FS EI+    + Y  NF +     DI KI  
Sbjct: 6  LKFGDLFAGIGGFRLAFEKA----DYECVFSCEIDQACQQVYLNNFGDKPEC-DIRKIDL 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +P  DVL AGFPCQPFS  G
Sbjct: 61 EKLPYFDVLTAGFPCQPFSICG 82


>gi|300724477|ref|YP_003713798.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
 gi|297631015|emb|CBJ91699.1| DNA cytosine methylase [Xenorhabdus nematophila ATCC 19061]
          Length = 476

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+   P   +F  DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEE----IGGQCVFTSEWNKDAVRTYKANWYCDPEEHVFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                  ++IP+HDVLLAGFPCQPFS AG
Sbjct: 152 DITLSHDISVSDKEAYQNIDREIPNHDVLLAGFPCQPFSLAG 193


>gi|295675907|ref|YP_003604431.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
 gi|295435750|gb|ADG14920.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1002]
          Length = 430

 Score =  129 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFG 54
            +  DLF GIGGIR+  E        EC F+SE N +S +TY+ N+           + G
Sbjct: 71  FRFIDLFAGIGGIRMGFEA----HGGECVFTSEWNDFSTRTYRENYGGNAASGSAHALIG 126

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI     +D+P HDVLL GFPCQPFS AG
Sbjct: 127 DIVAFPAEDVPSHDVLLGGFPCQPFSIAG 155


>gi|157737722|ref|YP_001490405.1| DNA (cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|157699576|gb|ABV67736.1| DNA (Cytosine-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 326

 Score =  129 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIR   E+ F   + E  F+SE++ Y+   Y  N+ N   +GDI KIK 
Sbjct: 20 YKFIDLFAGIGGIRTGFEKVFKEES-EFVFASELDKYAQIAYFENY-NEKPYGDITKIKE 77

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+HD++LAGFPCQ FS AG
Sbjct: 78 EDIPNHDIILAGFPCQAFSIAG 99


>gi|157827820|ref|YP_001496884.1| site-specific DNA methylase [Rickettsia bellii OSU 85-389]
 gi|157803124|gb|ABV79847.1| Site-specific DNA methylase [Rickettsia bellii OSU 85-389]
          Length = 165

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     +N+EC FSS+I+    + Y+ NF +    GDI +I 
Sbjct: 1  MYKFIDLFCGIGGFRKALES----KNLECVFSSDIDKDVQEAYKRNFGDKP-HGDITEIP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ANKIPKHDILCAGFPCQSFSISG 78


>gi|298373723|ref|ZP_06983712.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
          F0058]
 gi|298274775|gb|EFI16327.1| modification methylase EcoRII [Bacteroidetes oral taxon 274 str.
          F0058]
          Length = 457

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          LK  DLF G+GG  L L         +C F+SEI     K Y+ NFP T I  GDI KIK
Sbjct: 12 LKFIDLFAGLGGFHLAL----KELGCKCVFASEIKDDLRKLYKINFPETPIIEGDITKIK 67

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +++IP HD+L AGFPCQPFSQAG
Sbjct: 68 SEEIPSHDILCAGFPCQPFSQAG 90


>gi|91206207|ref|YP_538562.1| site-specific DNA methylase [Rickettsia bellii RML369-C]
 gi|91069751|gb|ABE05473.1| Site-specific DNA methylase [Rickettsia bellii RML369-C]
          Length = 308

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     +N+EC FSS+I+    + Y+ NF +    GDI ++ 
Sbjct: 1  MYKFIDLFCGIGGFRKALES----KNLECVFSSDIDKDVQEAYKRNFGDKP-HGDITEMP 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ANKIPKHDILCAGFPCQSFSISG 78


>gi|313158099|gb|EFR57504.1| putative DNA (cytosine-5-)-methyltransferase [Alistipes sp. HGB5]
          Length = 431

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF G+GG RL ++    H    C FSSE N Y+ +TY ANF     FGDI K + 
Sbjct: 110 FTFIDLFAGMGGFRLAMQ----HYGGRCVFSSEWNKYAQQTYLANFGEVP-FGDITKDEI 164

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           ++ IPD  D+L AGFPCQPFS AG
Sbjct: 165 KEYIPDGFDILCAGFPCQPFSIAG 188


>gi|37524351|ref|NP_927695.1| DNA cytosine methylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36783775|emb|CAE12633.1| DNA-cytosine methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 478

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+   P +  F  DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEE----IGGQCVFTSEWNKDAVRTYKANWYCDPESHKFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  ++IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EITLSENSKIDEKEAYKNIDKEIPDHDVLLAGFPCQPFSLAG 193


>gi|127464|sp|P11408|MTM1_MORSP RecName: Full=Modification methylase MspI; Short=M.MspI; AltName:
           Full=Cytosine-specific methyltransferase MspI
 gi|44539|emb|CAA32393.1| unnamed protein product [Moraxella sp.]
          Length = 418

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIR    Q+F     +C FSSEI+P++  TY  NF   + FGDI K++ 
Sbjct: 105 FKFIDLFSGIGGIR----QSFEVNGGKCVFSSEIDPFAKFTYYTNFG-VVPFGDITKVEA 159

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQPFS  G
Sbjct: 160 TTIPQHDILCAGFPCQPFSHIG 181


>gi|238787820|ref|ZP_04631617.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
 gi|238724163|gb|EEQ15806.1| Modification methylase EcoRII [Yersinia frederiksenii ATCC 33641]
          Length = 475

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE NPY+V+TY+AN+           DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNPYAVRTYKANWYCDPVEHRFNSDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  + IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EITLSENTEISDEEAYRNIDEHIPDHDVLLAGFPCQPFSLAG 193


>gi|296114735|ref|ZP_06833385.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978659|gb|EFG85387.1| DNA-cytosine methyltransferase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 419

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI- 59
            +  DLF GIGG+R+  E+        C F+SE + +S +TY  N+P N  I GDI    
Sbjct: 70  FRFIDLFAGIGGLRIGFEE----IGGRCVFTSEWDRFSRQTYALNYPDNHEISGDIRPFA 125

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQAG 83
                IP+HDVLLAGFPCQPFS AG
Sbjct: 126 EDPSLIPEHDVLLAGFPCQPFSIAG 150


>gi|170691874|ref|ZP_02883038.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
 gi|170143158|gb|EDT11322.1| DNA-cytosine methyltransferase [Burkholderia graminis C4D1M]
          Length = 438

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N +S KTYQ N  +        GDI 
Sbjct: 83  FRFIDLFAGIGGIRRGFEA----HGGQCVFTSEWNEFSKKTYQQNHRDADDAHQFVGDIV 138

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                +IP HDVLLAGFPCQPFS AG
Sbjct: 139 SFAEDEIPPHDVLLAGFPCQPFSIAG 164


>gi|326559503|gb|EGE09926.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 7169]
          Length = 354

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN           E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGNFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDGDIPKADIVIGGFPCQDFSLAG 110


>gi|119026301|ref|YP_910146.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765885|dbj|BAF40064.1| DNA-methyltransferase MKpn2kI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 383

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  DLF GIGG RL  ++T     V+  FSSEIN +S KTY ANF      GDI +I  
Sbjct: 73  YRSIDLFAGIGGTRLGFQETGR---VKVVFSSEINKFSAKTYHANFG-EYPAGDITQIAA 128

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+L+ GFPCQ FSQAG
Sbjct: 129 SDIPDHDILVGGFPCQAFSQAG 150


>gi|269122857|ref|YP_003305434.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
 gi|268314183|gb|ACZ00557.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
          Length = 329

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG RL LE        EC +S+E +  + K YQ NF +    GDI  I  
Sbjct: 12 LKFIDLFAGLGGFRLSLES----FGAECVYSNEWDKNAQKVYQMNFGDMP-EGDITLIDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPDHD+L AGFPCQ FS +G
Sbjct: 67 NNIPDHDILCAGFPCQAFSISG 88


>gi|1871451|dbj|BAA11167.1| C5-cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|3421011|emb|CAA76526.1| M.Ecl18kI (DNA-methyltransferase) [Enterobacter cloacae]
          Length = 379

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN+ +    GDI KI  
Sbjct: 72  YRMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGD-FPDGDITKIDE 127

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDH++L+ GFPC  FSQAG
Sbjct: 128 KDIPDHEILVGGFPCVAFSQAG 149


>gi|326567273|gb|EGE17393.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326568220|gb|EGE18302.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC8]
          Length = 354

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN           E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGNFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDGDIPKADIVIGGFPCQDFSLAG 110


>gi|32470131|ref|NP_863573.1| DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|462656|sp|P34879|MTS2_SHISO RecName: Full=Modification methylase SsoII; Short=M.SsoII; AltName:
           Full=Cytosine-specific methyltransferase SsoII
 gi|11559818|gb|AAG38101.1|AF300473_2 DNA-methyltransferase MKpn2kI [Klebsiella pneumoniae]
 gi|294244|gb|AAA98279.1| C5-cytosine methylase [Plasmid P4]
          Length = 379

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN+ +    GDI KI  
Sbjct: 72  YRMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGD-FPDGDITKIDE 127

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDH++L+ GFPC  FSQAG
Sbjct: 128 KDIPDHEILVGGFPCVAFSQAG 149


>gi|326566077|gb|EGE16234.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC1]
          Length = 354

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+  LF G GG+ L     FN           E  F+++I   + +TYQ NF + +I  
Sbjct: 22  LKVISLFSGCGGMDLGFIGDFNSLGNFYPKQPFEIIFANDIFEKACQTYQHNFNHNIICQ 81

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+ I   DIP  D+++ GFPCQ FS AG
Sbjct: 82  DISTIDDTDIPKADIVIGGFPCQDFSLAG 110


>gi|1657420|gb|AAC45971.1| DNA cytosine methyltransferase M.SenPI [Salmonella enterica subsp.
           enterica serovar Enteritidis]
          Length = 379

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN+ +    GDI KI  
Sbjct: 72  YRMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGD-FPDGDITKIDE 127

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDH++L+ GFPC  FSQAG
Sbjct: 128 KDIPDHEILVGGFPCVAFSQAG 149


>gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
 gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
           15053]
          Length = 377

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           ++  DLFCGIGG R   +  F+  ++E  C FSS+I+ Y+  +Y+ANF      GDI KI
Sbjct: 74  IRYIDLFCGIGGFRYASQYAFDKLDLEGKCVFSSDIDKYAQVSYEANFGERP-MGDITKI 132

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +IPD D+L  GFPCQ FS  G
Sbjct: 133 EASEIPDFDILFGGFPCQAFSICG 156


>gi|195867949|ref|ZP_03079946.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
 gi|195660345|gb|EDX53605.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
          Length = 319

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|150026305|ref|YP_001297131.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772846|emb|CAL44330.1| Type II modification methyltransferase HpaII [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG R+ ++    +   +C F+SE +  + KTY+AN+     FGDI K + 
Sbjct: 95  FKFVDLFAGIGGFRMAMQ----NLGGKCVFTSEWDKEAQKTYRANYGEVP-FGDITKQQI 149

Query: 62  QD-IP-DHDVLLAGFPCQPFSQAG 83
           +D IP + D+L AGFPCQ FS AG
Sbjct: 150 KDYIPSEFDLLCAGFPCQAFSIAG 173


>gi|159795737|pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
          Observable Precatalytic Intermediates During Dna
          Cytosine Methylation
          Length = 327

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG RL LE        EC +S+E + Y+ + Y+ NF      GDI ++  
Sbjct: 12 LRFIDLFAGLGGFRLALESC----GAECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + IPDHD+L AGFP Q FS +G
Sbjct: 67 KTIPDHDILCAGFPAQAFSISG 88


>gi|209554428|ref|YP_002284952.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
          str. ATCC 33699]
 gi|209541929|gb|ACI60158.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 10
          str. ATCC 33699]
          Length = 319

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|330911766|gb|EGH40276.1| DNA-cytosine methyltransferase [Escherichia coli AA86]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323962004|gb|EGB57603.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|320641809|gb|EFX11197.1| DNA cytosine methylase [Escherichia coli O157:H7 str. G5101]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAVEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|315296465|gb|EFU55762.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 16-3]
          Length = 476

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|315290247|gb|EFU49625.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
          Length = 478

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 93  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 148

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 149 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 190


>gi|315286667|gb|EFU46100.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 475

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 90  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 145

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 146 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 187


>gi|331673470|ref|ZP_08374238.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
 gi|331069668|gb|EGI41055.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA280]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331663456|ref|ZP_08364366.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
 gi|331059255|gb|EGI31232.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA143]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331653374|ref|ZP_08354379.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|331049472|gb|EGI21544.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300940416|ref|ZP_07155001.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300454810|gb|EFK18303.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 476

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|300923873|ref|ZP_07139889.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300419870|gb|EFK03181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
          Length = 477

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|300975476|ref|ZP_07173024.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|300410366|gb|EFJ93904.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 45-1]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300904853|ref|ZP_07122678.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301304244|ref|ZP_07210359.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300403236|gb|EFJ86774.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300840501|gb|EFK68261.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315257206|gb|EFU37174.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|301018179|ref|ZP_07182696.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300399832|gb|EFJ83370.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|301050676|ref|ZP_07197538.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300297633|gb|EFJ54018.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 477

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|293410317|ref|ZP_06653893.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470785|gb|EFF13269.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|260855934|ref|YP_003229825.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300822269|ref|ZP_07102410.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|257754583|dbj|BAI26085.1| DNA cytosine methylase [Escherichia coli O26:H11 str. 11368]
 gi|300525152|gb|EFK46221.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|309702249|emb|CBJ01566.1| DNA-cytosine methyltransferase [Escherichia coli ETEC H10407]
 gi|323937230|gb|EGB33510.1| DNA-cytosine methyltransferase [Escherichia coli E1520]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|218554541|ref|YP_002387454.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|260868553|ref|YP_003234955.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|218361309|emb|CAQ98893.1| DNA cytosine methylase [Escherichia coli IAI1]
 gi|257764909|dbj|BAI36404.1| DNA cytosine methylase [Escherichia coli O111:H- str. 11128]
 gi|323180787|gb|EFZ66327.1| DNA-cytosine methyltransferase [Escherichia coli 1180]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|170681403|ref|YP_001743285.1| DNA cytosine methylase [Escherichia coli SMS-3-5]
 gi|170519121|gb|ACB17299.1| DNA-cytosine methyltransferase [Escherichia coli SMS-3-5]
 gi|324119009|gb|EGC12898.1| DNA-cytosine methyltransferase [Escherichia coli E1167]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|91211180|ref|YP_541166.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|117624099|ref|YP_853012.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218558817|ref|YP_002391730.1| DNA cytosine methylase [Escherichia coli S88]
 gi|91072754|gb|ABE07635.1| DNA cytosine methylase [Escherichia coli UTI89]
 gi|115513223|gb|ABJ01298.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|218365586|emb|CAR03313.1| DNA cytosine methylase [Escherichia coli S88]
 gi|294492656|gb|ADE91412.1| DNA-cytosine methyltransferase [Escherichia coli IHE3034]
 gi|307626564|gb|ADN70868.1| DNA cytosine methylase [Escherichia coli UM146]
 gi|323952452|gb|EGB48325.1| DNA-cytosine methyltransferase [Escherichia coli H252]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|82543581|ref|YP_407528.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|81244992|gb|ABB65700.1| DNA cytosine methylase [Shigella boydii Sb227]
 gi|332096894|gb|EGJ01883.1| DNA-cytosine methyltransferase [Shigella boydii 3594-74]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|74312499|ref|YP_310918.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|73855976|gb|AAZ88683.1| DNA cytosine methylase [Shigella sonnei Ss046]
 gi|323168918|gb|EFZ54598.1| DNA-cytosine methyltransferase [Shigella sonnei 53G]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|26248232|ref|NP_754272.1| DNA cytosine methylase [Escherichia coli CFT073]
 gi|227885611|ref|ZP_04003416.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|237705920|ref|ZP_04536401.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|331647554|ref|ZP_08348646.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|26108636|gb|AAN80839.1|AE016762_92 DNA-cytosine methyltransferase [Escherichia coli CFT073]
 gi|226900677|gb|EEH86936.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837184|gb|EEJ47650.1| DNA cytosine methylase [Escherichia coli 83972]
 gi|281179022|dbj|BAI55352.1| DNA cytosine methylase [Escherichia coli SE15]
 gi|307553973|gb|ADN46748.1| DNA cytosine methylase [Escherichia coli ABU 83972]
 gi|320194327|gb|EFW68958.1| DNA-cytosine methyltransferase [Escherichia coli WV_060327]
 gi|323956356|gb|EGB52099.1| DNA-cytosine methyltransferase [Escherichia coli H263]
 gi|324005878|gb|EGB75097.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 57-2]
 gi|331043278|gb|EGI15416.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|15802395|ref|NP_288421.1| DNA cytosine methylase [Escherichia coli O157:H7 EDL933]
 gi|15831953|ref|NP_310726.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|16129907|ref|NP_416470.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108792|ref|AP_002572.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. W3110]
 gi|168752207|ref|ZP_02777229.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758275|ref|ZP_02783282.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168771615|ref|ZP_02796622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777717|ref|ZP_02802724.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783359|ref|ZP_02808366.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789321|ref|ZP_02814328.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801737|ref|ZP_02826744.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|170081604|ref|YP_001730924.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|195939267|ref|ZP_03084649.1| DNA cytosine methylase [Escherichia coli O157:H7 str. EC4024]
 gi|208810340|ref|ZP_03252216.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816602|ref|ZP_03257722.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821263|ref|ZP_03261583.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400193|ref|YP_002271076.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919382|ref|YP_002293466.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217328629|ref|ZP_03444710.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218689956|ref|YP_002398168.1| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238901165|ref|YP_002926961.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253773091|ref|YP_003035922.1| DNA cytosine methylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254793611|ref|YP_003078448.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|256017846|ref|ZP_05431711.1| DNA cytosine methylase [Shigella sp. D9]
 gi|261227545|ref|ZP_05941826.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254631|ref|ZP_05947164.1| DNA cytosine methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293415271|ref|ZP_06657914.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300818618|ref|ZP_07098826.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300920181|ref|ZP_07136630.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|301327749|ref|ZP_07220953.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301644580|ref|ZP_07244570.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307312454|ref|ZP_07592088.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|312973821|ref|ZP_07787993.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|332278872|ref|ZP_08391285.1| DNA cytosine methylase [Shigella sp. D9]
 gi|83305674|sp|P0AEE0|DCM_ECO57 RecName: Full=DNA-cytosine methyltransferase
 gi|83305675|sp|P0AED9|DCM_ECOLI RecName: Full=DNA-cytosine methyltransferase; AltName:
           Full=M.EcoDcm
 gi|12516070|gb|AAG56975.1|AE005418_3 DNA cytosine methylase [Escherichia coli O157:H7 str. EDL933]
 gi|41239|emb|CAA31705.1| unnamed protein product [Escherichia coli K-12]
 gi|145719|gb|AAA03723.1| DNA cytosine methylase [Escherichia coli]
 gi|1736630|dbj|BAA15788.1| DNA cytosine methylase [Escherichia coli str. K12 substr. W3110]
 gi|1788271|gb|AAC75027.1| DNA cytosine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362167|dbj|BAB36122.1| DNA cytosine methylase [Escherichia coli O157:H7 str. Sakai]
 gi|169889439|gb|ACB03146.1| DNA cytosine methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|187767102|gb|EDU30946.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013903|gb|EDU52025.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999305|gb|EDU68291.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354901|gb|EDU73320.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359668|gb|EDU78087.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371047|gb|EDU89463.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376137|gb|EDU94553.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|208724856|gb|EDZ74563.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730945|gb|EDZ79634.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741386|gb|EDZ89068.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161593|gb|ACI39026.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766668|gb|ACI81646.1| DNA cytosine methylase [Escherichia coli]
 gi|209766670|gb|ACI81647.1| DNA cytosine methylase [Escherichia coli]
 gi|209766672|gb|ACI81648.1| DNA cytosine methylase [Escherichia coli]
 gi|209766676|gb|ACI81650.1| DNA cytosine methylase [Escherichia coli]
 gi|209912641|dbj|BAG77715.1| DNA cytosine methylase [Escherichia coli SE11]
 gi|217317976|gb|EEC26403.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218427520|emb|CAR08415.2| DNA cytosine methylase [Escherichia coli ED1a]
 gi|238860813|gb|ACR62811.1| DNA cytosine methylase [Escherichia coli BW2952]
 gi|253324135|gb|ACT28737.1| DNA-cytosine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254593011|gb|ACT72372.1| DNA cytosine methylase [Escherichia coli O157:H7 str. TW14359]
 gi|260448927|gb|ACX39349.1| DNA-cytosine methyltransferase [Escherichia coli DH1]
 gi|291432919|gb|EFF05898.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|300412803|gb|EFJ96113.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300528790|gb|EFK49852.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300845711|gb|EFK73471.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|301077088|gb|EFK91894.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|306907625|gb|EFN38128.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|310332416|gb|EFP99651.1| DNA-cytosine methyltransferase [Escherichia coli 1827-70]
 gi|315061260|gb|ADT75587.1| DNA cytosine methylase [Escherichia coli W]
 gi|315136597|dbj|BAJ43756.1| DNA cytosine methylase [Escherichia coli DH1]
 gi|320191934|gb|EFW66581.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198651|gb|EFW73251.1| DNA-cytosine methyltransferase [Escherichia coli EC4100B]
 gi|320647167|gb|EFX16000.1| DNA cytosine methylase [Escherichia coli O157:H- str. 493-89]
 gi|320652452|gb|EFX20750.1| DNA cytosine methylase [Escherichia coli O157:H- str. H 2687]
 gi|320658054|gb|EFX25816.1| DNA cytosine methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658625|gb|EFX26319.1| DNA cytosine methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668523|gb|EFX35350.1| DNA cytosine methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323174657|gb|EFZ60277.1| DNA-cytosine methyltransferase [Escherichia coli LT-68]
 gi|323183944|gb|EFZ69331.1| DNA-cytosine methyltransferase [Escherichia coli 1357]
 gi|323378163|gb|ADX50431.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
 gi|323948336|gb|EGB44323.1| DNA-cytosine methyltransferase [Escherichia coli H120]
 gi|326342371|gb|EGD66152.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1044]
 gi|326344875|gb|EGD68622.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|332101224|gb|EGJ04570.1| DNA cytosine methylase [Shigella sp. D9]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|193066646|ref|ZP_03047681.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|260844359|ref|YP_003222137.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
 gi|192925721|gb|EDV80380.1| DNA-cytosine methyltransferase [Escherichia coli E22]
 gi|257759506|dbj|BAI31003.1| DNA cytosine methylase [Escherichia coli O103:H2 str. 12009]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|191169235|ref|ZP_03030988.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
 gi|190900713|gb|EDV60509.1| DNA-cytosine methyltransferase [Escherichia coli B7A]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|110642066|ref|YP_669796.1| DNA cytosine methylase [Escherichia coli 536]
 gi|191173268|ref|ZP_03034798.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|110343658|gb|ABG69895.1| DNA-cytosine methyltransferase [Escherichia coli 536]
 gi|190906385|gb|EDV65994.1| DNA-cytosine methyltransferase [Escherichia coli F11]
 gi|222033699|emb|CAP76440.1| DNA-cytosine methyltransferase [Escherichia coli LF82]
 gi|312946553|gb|ADR27380.1| DNA cytosine methylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|324013473|gb|EGB82692.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|157161430|ref|YP_001458748.1| DNA cytosine methylase [Escherichia coli HS]
 gi|157067110|gb|ABV06365.1| DNA-cytosine methyltransferase [Escherichia coli HS]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|157158517|ref|YP_001463262.1| DNA cytosine methylase [Escherichia coli E24377A]
 gi|157080547|gb|ABV20255.1| DNA-cytosine methyltransferase [Escherichia coli E24377A]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|187732725|ref|YP_001879611.1| DNA cytosine methylase [Shigella boydii CDC 3083-94]
 gi|293446340|ref|ZP_06662762.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|187429717|gb|ACD08991.1| DNA-cytosine methyltransferase [Shigella boydii CDC 3083-94]
 gi|291323170|gb|EFE62598.1| DNA-cytosine methyltransferase [Escherichia coli B088]
 gi|320175451|gb|EFW50550.1| DNA-cytosine methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320184499|gb|EFW59303.1| DNA-cytosine methyltransferase [Shigella flexneri CDC 796-83]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323186716|gb|EFZ72038.1| DNA-cytosine methyltransferase [Escherichia coli RN587/1]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|331658007|ref|ZP_08358969.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
 gi|331056255|gb|EGI28264.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA206]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300899219|ref|ZP_07117494.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|300357175|gb|EFJ73045.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 477

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|294979850|pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
           Shigella Flexneri 2a Str. 301
          Length = 482

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 89  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 144

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 145 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 186


>gi|24113334|ref|NP_707844.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30063396|ref|NP_837567.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110805927|ref|YP_689447.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|24052347|gb|AAN43551.1| DNA cytosine methylase [Shigella flexneri 2a str. 301]
 gi|30041648|gb|AAP17376.1| DNA cytosine methylase [Shigella flexneri 2a str. 2457T]
 gi|110615475|gb|ABF04142.1| DNA cytosine methylase [Shigella flexneri 5 str. 8401]
 gi|281601397|gb|ADA74381.1| Cytosine-specific methyltransferase [Shigella flexneri 2002017]
 gi|313650184|gb|EFS14597.1| DNA-cytosine methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|332756118|gb|EGJ86471.1| DNA-cytosine methyltransferase [Shigella flexneri 4343-70]
 gi|332757312|gb|EGJ87649.1| DNA-cytosine methyltransferase [Shigella flexneri 2747-71]
 gi|332757528|gb|EGJ87863.1| DNA-cytosine methyltransferase [Shigella flexneri K-671]
 gi|332766700|gb|EGJ96904.1| cytosine-specific methyltransferase [Shigella flexneri 2930-71]
 gi|333003060|gb|EGK22614.1| DNA-cytosine methyltransferase [Shigella flexneri VA-6]
 gi|333003307|gb|EGK22853.1| DNA-cytosine methyltransferase [Shigella flexneri K-218]
 gi|333004068|gb|EGK23602.1| DNA-cytosine methyltransferase [Shigella flexneri K-272]
 gi|333017687|gb|EGK36999.1| DNA-cytosine methyltransferase [Shigella flexneri K-304]
 gi|333017841|gb|EGK37148.1| DNA-cytosine methyltransferase [Shigella flexneri K-227]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|1171044|sp|P43420|MTB6_BACSF RecName: Full=Modification methylase Bsp6I; Short=M.Bsp6I;
          AltName: Full=Cytosine-specific methyltransferase Bsp6I
 gi|547481|emb|CAA57293.1| site-specific DNA-methyltransferase (cytosine-specific) [Bacillus
          sp.]
 gi|1098125|prf||2115268B methyltransferase Bsp6IM
          Length = 315

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+I  LF G+GGI L  EQT      E  +++E +  +  TYQ+NF N LI  DI  IK
Sbjct: 1  MLQIASLFAGVGGIDLGFEQTGY---FETVWANEYDKNAAITYQSNFKNKLIIDDIRNIK 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D+PD DVLL+GFPC  FS AG
Sbjct: 58 VEDVPDFDVLLSGFPCTSFSVAG 80


>gi|171920707|ref|ZP_02931926.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
          str. ATCC 33698]
 gi|185179015|ref|ZP_02964765.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188024024|ref|ZP_02996783.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188518336|ref|ZP_03003849.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
          serovar 11 str. ATCC 33695]
 gi|188524309|ref|ZP_03004347.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 12 str. ATCC 33696]
 gi|198273488|ref|ZP_03206024.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 4 str. ATCC 27816]
 gi|225550923|ref|ZP_03771872.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 2 str. ATCC 27814]
 gi|225551062|ref|ZP_03772008.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 8 str. ATCC 27618]
 gi|171903447|gb|EDT49736.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 13
          str. ATCC 33698]
 gi|184209104|gb|EDU06147.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188019052|gb|EDU57092.1| DNA-cytosine methyltransferase [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188997975|gb|EDU67072.1| cytosine-specific methyltransferase NlaX [Ureaplasma urealyticum
          serovar 11 str. ATCC 33695]
 gi|195660089|gb|EDX53469.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 12 str. ATCC 33696]
 gi|198250008|gb|EDY74788.1| cytosine-specific methyltransferase [Ureaplasma urealyticum
          serovar 4 str. ATCC 27816]
 gi|225378877|gb|EEH01242.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 8 str. ATCC 27618]
 gi|225380077|gb|EEH02439.1| DNA (cytosine-5-)-methyltransferase [Ureaplasma urealyticum
          serovar 2 str. ATCC 27814]
          Length = 319

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI    +Q       +  +++EI+  + KTY+ NF ++ L+ GDI  I 
Sbjct: 4  IKVASLFAGIGGICYGFKQA----GAKIVWANEIDRDACKTYRYNFGDSYLVEGDIKNIG 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D+L  GFPCQ FS AG
Sbjct: 60 PNDIPDIDILNGGFPCQAFSIAG 82


>gi|320182772|gb|EFW57655.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEDVSDEGAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|215487159|ref|YP_002329590.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312967158|ref|ZP_07781376.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
 gi|215265231|emb|CAS09622.1| DNA cytosine methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|312288622|gb|EFR16524.1| DNA-cytosine methyltransferase [Escherichia coli 2362-75]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|284921868|emb|CBG34943.1| DNA-cytosine methyltransferase [Escherichia coli 042]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|306814216|ref|ZP_07448382.1| DNA cytosine methylase [Escherichia coli NC101]
 gi|305852375|gb|EFM52826.1| DNA cytosine methylase [Escherichia coli NC101]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|300994233|ref|ZP_07180788.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300304943|gb|EFJ59463.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 477

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|319779706|ref|YP_004130619.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109730|gb|ADU92476.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 329

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLF GIGG R+ L+        +C FSSE + ++ +TY  NF N +   DI KI  
Sbjct: 12 LTFIDLFAGIGGFRVALQS----LGAKCVFSSEWDKFAKETYWLNF-NEIAHDDITKIDE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+L AGFPCQ FS +G
Sbjct: 67 CTIPNHDILCAGFPCQAFSISG 88


>gi|257061088|ref|YP_003138976.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256591254|gb|ACV02141.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 331

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG RL  EQ       +C +S EIN Y  K Y  NF       D+ +I  
Sbjct: 6  FKFIDLFAGIGGFRLAFEQA----QYQCVYSCEINEYCQKVYYNNFDECPD-NDVTQINP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD DVL AGFPCQPFS  G
Sbjct: 61 DTLPDFDVLTAGFPCQPFSICG 82


>gi|193071315|ref|ZP_03052233.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331683510|ref|ZP_08384111.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
 gi|192955357|gb|EDV85842.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|331079725|gb|EGI50922.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H299]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|194430436|ref|ZP_03062919.1| DNA-cytosine methyltransferase [Escherichia coli B171]
 gi|194411515|gb|EDX27854.1| DNA-cytosine methyltransferase [Escherichia coli B171]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|309795932|ref|ZP_07690345.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|308120382|gb|EFO57644.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 145-7]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|301029418|ref|ZP_07192512.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|299877722|gb|EFI85933.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 196-1]
          Length = 476

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 188


>gi|157414453|ref|YP_001481709.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|283955585|ref|ZP_06373079.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|157385417|gb|ABV51732.1| hypothetical protein C8J_0133 [Campylobacter jejuni subsp. jejuni
          81116]
 gi|283792928|gb|EFC31703.1| hypothetical protein C1336_000030018 [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 321

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGGIR+  +  F  + +E  FSSEI+ ++ +TY  NF N L  GDI +I  
Sbjct: 8  LKAIDLFAGIGGIRIGFKNIFQEK-LEFVFSSEIDKFACQTYFCNF-NELPHGDITQINE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP H++LLAGFPCQ FS AG
Sbjct: 66 NNIPKHNILLAGFPCQAFSIAG 87


>gi|218705454|ref|YP_002412973.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|293405443|ref|ZP_06649435.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298381087|ref|ZP_06990686.1| DNA cytosine methylase [Escherichia coli FVEC1302]
 gi|218432551|emb|CAR13444.1| DNA cytosine methylase [Escherichia coli UMN026]
 gi|291427651|gb|EFF00678.1| DNA cytosine methylase [Escherichia coli FVEC1412]
 gi|298278529|gb|EFI20043.1| DNA cytosine methylase [Escherichia coli FVEC1302]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323495143|ref|ZP_08100228.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
 gi|323310583|gb|EGA63762.1| DNA-methyltransferase MKpn2kI [Vibrio brasiliensis LMG 20546]
          Length = 443

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGGIR    Q F      C F+SE + ++ KTY  N+      GDI KI  
Sbjct: 84  FTYIDLFAGIGGIR----QPFQELGGHCVFTSEWDKFAQKTYLHNYGEMPN-GDITKICV 138

Query: 62  QD-IPDHDVLLAGFPCQPFSQAG 83
           ++ IP+HD+LL GFPCQ FSQAG
Sbjct: 139 KEQIPEHDILLGGFPCQAFSQAG 161


>gi|323158561|gb|EFZ44575.1| DNA-cytosine methyltransferase [Escherichia coli E128010]
          Length = 472

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|238919389|ref|YP_002932904.1| DNA cytosine methylase [Edwardsiella ictaluri 93-146]
 gi|238868958|gb|ACR68669.1| modification methylase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 94  FRFIDLFAGIGGIRKGFES----IGGQCVFTSEWNKEAVRTYKANWYNDEDLHTFNMDIR 149

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 150 EITLSAESDISEHDAYKNINQHIPDHDVLLAGFPCQPFSLAG 191


>gi|256760956|ref|ZP_05501536.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
 gi|256682207|gb|EEU21902.1| type II restriction-modification system methylation subunit
           [Enterococcus faecalis T3]
          Length = 405

 Score =  128 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
             + DLF GIGG RL  + T     V+  FSSE + ++ KTY ANF      GDI +I  
Sbjct: 95  YTMIDLFAGIGGTRLGFQLTGK---VKSVFSSEWDKFAQKTYFANFG-EYPHGDITQIDE 150

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           + +P+HD+L+AGFPCQ FSQAG
Sbjct: 151 KVVPNHDILVAGFPCQAFSQAG 172


>gi|259909642|ref|YP_002649998.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965264|emb|CAX56796.1| Cytosine-specific methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|261863687|gb|ACY01298.1| unknown [Erwinia pyrifoliae]
 gi|283479721|emb|CAY75637.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 473

 Score =  128 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEE----IGGQCVFTSEWNKDAVRTYKANWYNDEEVHRFNFDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRPEVREDDAYRNIDKEIPDHDVLLAGFPCQPFSLAG 193


>gi|188494720|ref|ZP_03001990.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
 gi|188489919|gb|EDU65022.1| DNA-cytosine methyltransferase [Escherichia coli 53638]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|307138628|ref|ZP_07497984.1| DNA cytosine methylase [Escherichia coli H736]
 gi|331642581|ref|ZP_08343716.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
 gi|331039379|gb|EGI11599.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H736]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKDGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323152708|gb|EFZ38980.1| DNA-cytosine methyltransferase [Escherichia coli EPECa14]
          Length = 374

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|166367724|ref|YP_001659997.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
 gi|166090097|dbj|BAG04805.1| modification methylase NgoBI [Microcystis aeruginosa NIES-843]
          Length = 330

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLFCG+GG R+ +EQ    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFVDLFCGLGGFRVAIEQVCRQKNLESDCVFSCDIDKDARSIYHANFGDQPQ-GDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|323968854|gb|EGB64190.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 272

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            ++ DLF GIGG RL   QT     V   FSSE + ++ KTY AN+ +    GDI KI  
Sbjct: 72  YRMIDLFAGIGGTRLGFHQT---NAVNVVFSSEWDKFAQKTYHANYGD-FPDGDITKIDE 127

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIPDH++L+ GFPC  FSQAG
Sbjct: 128 KDIPDHEILVGGFPCVAFSQAG 149


>gi|325499566|gb|EGC97425.1| DNA cytosine methylase [Escherichia fergusonii ECD227]
          Length = 473

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 151

Query: 58  KIKTQ----------------DIPDHDVLLAGFPCQPFSQAG 83
           ++                    IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 193


>gi|324112381|gb|EGC06359.1| DNA-cytosine methyltransferase [Escherichia fergusonii B253]
          Length = 473

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 151

Query: 58  KIKTQ----------------DIPDHDVLLAGFPCQPFSQAG 83
           ++                    IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 193


>gi|218551294|ref|YP_002385086.1| DNA cytosine methylase [Escherichia fergusonii ATCC 35469]
 gi|218358836|emb|CAQ91493.1| DNA modification methylase [Escherichia fergusonii ATCC 35469]
          Length = 485

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 108 FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDESSHTFNHDIR 163

Query: 58  KIKTQ----------------DIPDHDVLLAGFPCQPFSQAG 83
           ++                    IPDHDVLLAGFPCQPFS AG
Sbjct: 164 EVTLSADDTVSEKQAYAHIQRHIPDHDVLLAGFPCQPFSLAG 205


>gi|194433657|ref|ZP_03065933.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|194418086|gb|EDX34179.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1012]
 gi|332095525|gb|EGJ00541.1| DNA-cytosine methyltransferase [Shigella dysenteriae 155-74]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEGAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|324018843|gb|EGB88062.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 117-3]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVNDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 184


>gi|300951590|ref|ZP_07165422.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300449174|gb|EFK12794.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 478

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 93  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 148

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 149 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 190


>gi|300956520|ref|ZP_07168803.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300316661|gb|EFJ66445.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 477

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 189


>gi|170769440|ref|ZP_02903893.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
 gi|170121764|gb|EDS90695.1| DNA-cytosine methyltransferase [Escherichia albertii TW07627]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANYYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDAAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|170019707|ref|YP_001724661.1| DNA cytosine methylase [Escherichia coli ATCC 8739]
 gi|169754635|gb|ACA77334.1| DNA-cytosine methyltransferase [Escherichia coli ATCC 8739]
 gi|323940380|gb|EGB36571.1| DNA-cytosine methyltransferase [Escherichia coli E482]
 gi|332093084|gb|EGI98148.1| DNA-cytosine methyltransferase [Shigella boydii 5216-82]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRKHIPEHDVLLAGFPCQPFSLAG 184


>gi|288928693|ref|ZP_06422539.1| modification methylase NgoBI (Cytosine-specific methyltransferase
          NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329677|gb|EFC68262.1| modification methylase NgoBI (Cytosine-specific methyltransferase
          NgoBI) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 309

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++  DLF GIGGIR+      +    +C FSSE +  + KTY ANF + +  GDI KI 
Sbjct: 1  MVRYVDLFAGIGGIRIPF----DELGAQCVFSSEWDKAACKTYAANFGD-IPSGDITKIA 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP H +LLAGFPCQ FS  G
Sbjct: 56 AEDIPPHQLLLAGFPCQAFSIMG 78


>gi|218695565|ref|YP_002403232.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|256022383|ref|ZP_05436248.1| DNA cytosine methylase [Escherichia sp. 4_1_40B]
 gi|218352297|emb|CAU98056.1| DNA cytosine methylase [Escherichia coli 55989]
 gi|323972739|gb|EGB67939.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
 gi|332343686|gb|AEE57020.1| DNA-cytosine methyltransferase [Escherichia coli UMNK88]
          Length = 472

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|186476891|ref|YP_001858361.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
 gi|184193350|gb|ACC71315.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
          Length = 428

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 50/88 (56%), Gaps = 12/88 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFGD 55
             DLF GIGGIR+  E        +C F+SE N +S KTY+ NF        P   + GD
Sbjct: 73  FIDLFAGIGGIRMGFEA----HGGQCVFTSEWNVFSQKTYRENFGEHCGDAAPQHTLIGD 128

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I     + +P+HD+LL GFPCQPFS AG
Sbjct: 129 IVTFPAEAVPEHDILLGGFPCQPFSIAG 156


>gi|331671799|ref|ZP_08372595.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
 gi|331070788|gb|EGI42147.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli TA280]
          Length = 474

 Score =  128 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E    +   +C F+SE N  +V+TY+AN+ N  +      DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFE----NIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|317497297|ref|ZP_07955620.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895366|gb|EFV17525.1| DNA-cytosine methyltransferase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 385

 Score =  127 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIR   ++   +      +SSE + ++ KTY+ NF   +  GDI  +  
Sbjct: 72  FKQIDLFAGIGGIRQAFQRQGGYN----VYSSEWDKFAQKTYRINFG-EIPDGDITLVSE 126

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+LLAGFPCQPFSQAG
Sbjct: 127 NDIPDHDILLAGFPCQPFSQAG 148


>gi|218900599|ref|YP_002449010.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218543463|gb|ACK95857.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score =  127 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L   Q  +    +  ++++I+  +V+TY+ N  N ++  D+ ++ T
Sbjct: 1  MKVISLFSGAGGLDLGFVQAGH----QIIWANDIDKDAVETYKKNLGNHIVLKDLKEVDT 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIPD D+++ GFPCQ FS A
Sbjct: 57 NDIPDADIVIGGFPCQGFSVA 77


>gi|172038109|ref|YP_001804610.1| putative modification methylase [Cyanothece sp. ATCC 51142]
 gi|171699563|gb|ACB52544.1| putative modification methylase [Cyanothece sp. ATCC 51142]
          Length = 344

 Score =  127 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 8/89 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE-------CFFSSEINPYSVKTYQANFPNTLIFG 54
           LK  DLFCGIGG R+ LE   +   ++       C FSS+I+P + K Y+ANF      G
Sbjct: 16  LKYIDLFCGIGGFRIALESVCSQYRLKDKKIESICVFSSDIDPDAKKNYEANFKEKPQ-G 74

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI KI  + IP HD+LLAGFPCQPFS  G
Sbjct: 75  DITKIPIESIPKHDLLLAGFPCQPFSICG 103


>gi|331645413|ref|ZP_08346517.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
 gi|331045575|gb|EGI17701.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli M605]
          Length = 474

 Score =  127 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N  +      DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFES----IGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|167465361|ref|ZP_02330450.1| DNA-cytosine methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 432

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M    +LF GIGG R  L+Q        C F+SEI+ ++  +Y+A +     + GDI KI
Sbjct: 1  MFTYVELFAGIGGFRSALDQ----LGGICTFASEIDKFATISYRAMYDGAPELCGDITKI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             D+PDHD+L+ GFPCQ FS AG
Sbjct: 57 DASDVPDHDLLVGGFPCQAFSVAG 80


>gi|327254549|gb|EGE66165.1| modification methylase EcoRII [Escherichia coli STEC_7v]
          Length = 474

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E    +   +C F+SE N  +V+TY+AN+ N  +      DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFE----NIGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEVEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|331668651|ref|ZP_08369499.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
 gi|331063845|gb|EGI35756.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli TA271]
          Length = 458

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 73  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 128

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 129 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 170


>gi|24527985|emb|CAD33712.1| putative DNA methylase [Escherichia coli]
          Length = 314

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  +        +  ++++I+  +V TY+ N  + ++  D+++I  
Sbjct: 1  MKVVSLFSGAGGLDLGFKNA----GFQIVWANDIDSDAVLTYKKNIGDHIVLRDLSQIDM 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIPD DV++ GFPCQ FSQA
Sbjct: 57 DDIPDCDVVIGGFPCQGFSQA 77


>gi|169334482|ref|ZP_02861675.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259199|gb|EDS73165.1| hypothetical protein ANASTE_00885 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 337

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          ++  DLF GIGGIRL  E  F   N+E  F SE + Y+ KTY  NF +   I GDI +I 
Sbjct: 6  IRSIDLFAGIGGIRLGFENVFKD-NIETVFVSEWDKYAKKTYMENFNDDFEIAGDITEID 64

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP+ D+ LAGFPCQ FS AG
Sbjct: 65 ETSIPNFDICLAGFPCQAFSLAG 87


>gi|329768652|ref|ZP_08260136.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
 gi|328836366|gb|EGF86031.1| hypothetical protein HMPREF0428_01833 [Gemella haemolysans M341]
          Length = 427

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +   DLF GIGG RL +E+  +    +C    EI+ ++  +Y+   N  N + + DI ++
Sbjct: 1  MNFLDLFAGIGGFRLGMERAGH----KCVGFCEIDKFARSSYKVMHNTENEIEYHDIKEV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        DV+  GFPCQ FS AG
Sbjct: 57 TNEEFRKLRAKVDVICGGFPCQAFSIAG 84


>gi|307729019|ref|YP_003906243.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
 gi|307583554|gb|ADN56952.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1003]
          Length = 428

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            +  DLF GIGGIR   E         C F+SE N +S KTYQ N  +        GDI 
Sbjct: 73  FRFIDLFAGIGGIRRGFEA----HGGRCVFTSEWNEFSKKTYQQNHRDPDDAHQFVGDIV 128

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
               Q +P HDVLLAGFPCQPFS AG
Sbjct: 129 SFPEQSVPSHDVLLAGFPCQPFSIAG 154


>gi|323191533|gb|EFZ76794.1| modification methylase EcoRII [Escherichia coli RN587/1]
          Length = 474

 Score =  127 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N  +      DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFES----IGGQCVFTSEWNKEAVRTYKANWFNDELNHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDRDDVSEMEAYNHIDKNIPDHDVLLAGFPCQPFSLAG 193


>gi|254409526|ref|ZP_05023307.1| DNA-cytosine methyltransferase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183523|gb|EDX78506.1| DNA-cytosine methyltransferase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 437

 Score =  127 bits (321), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/84 (53%), Positives = 52/84 (61%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF GIGGIRL  EQ  N  N   EC  +SEI+P     Y+ NF N  + GDI KI
Sbjct: 4  IRFIDLFAGIGGIRLAFEQAANTLNYKTECVLASEISPDCQWVYKNNF-NHEVLGDIRKI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P HDVLLAGFPCQ FS AG
Sbjct: 63 N--QLPPHDVLLAGFPCQSFSYAG 84


>gi|82776352|ref|YP_402701.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|309789422|ref|ZP_07684012.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
 gi|81240500|gb|ABB61210.1| DNA cytosine methylase [Shigella dysenteriae Sd197]
 gi|308922816|gb|EFP68333.1| DNA-cytosine methyltransferase [Shigella dysenteriae 1617]
          Length = 472

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHRFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|238801891|ref|YP_002925094.1| putative DNA methylase [Streptococcus phage 5093]
 gi|238558577|gb|ACR45907.1| putative DNA methylase [Streptococcus phage 5093]
          Length = 319

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+   N    +   DI ++
Sbjct: 1  MKFIDLFAGIGGFRLGMESAGH----ECVGFCEIDKFARASYKAIHNTEGEIELHDITQV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
             +I +    D +  GFPCQ FS AG
Sbjct: 57 TDDEIREIGHVDAICGGFPCQAFSIAG 83


>gi|238898088|ref|YP_002923769.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465848|gb|ACQ67622.1| DNA cytosine methylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 401

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 52/83 (62%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +  DLF GIGGIR+  +     +  EC F+SE N +S KTY  N+     F GDI    
Sbjct: 49  FRFIDLFAGIGGIRMGFDA----QGGECVFTSEWNRFSKKTYIQNYGAPHPFVGDIVPYP 104

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            +D+PDHDVLLAGFPCQPFS AG
Sbjct: 105 AEDVPDHDVLLAGFPCQPFSIAG 127


>gi|218439218|ref|YP_002377547.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218171946|gb|ACK70679.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 323

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+++  LF G GG+ L           E  ++++I+  + +TYQ N  + +I  DI  I 
Sbjct: 1  MIRVVSLFSGCGGMDLGFIWA----GYEIVWANDIDHDACETYQLNIGDHIIEDDIKNIN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
           + +P+ D++L GFPCQ FS 
Sbjct: 57 FKHLPECDLILGGFPCQDFSM 77


>gi|323525262|ref|YP_004227415.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
 gi|323382264|gb|ADX54355.1| DNA-cytosine methyltransferase [Burkholderia sp. CCGE1001]
          Length = 428

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/86 (48%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGGIR   E         C F+SE N +S KTYQ N           GDI 
Sbjct: 73  FRFIDLFAGIGGIRRGFEA----HGGRCVFTSEWNEFSKKTYQQNHRDADGTHQFVGDIV 128

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                D+P HDVLLAGFPCQPFS AG
Sbjct: 129 SFAENDVPAHDVLLAGFPCQPFSIAG 154


>gi|331091354|ref|ZP_08340194.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404515|gb|EGG84059.1| hypothetical protein HMPREF9477_00837 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 391

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           K  DLF GIGG      Q  ++   EC F+SEI+ Y+++TY+ N+   +  G +I  + 
Sbjct: 5  FKFIDLFAGIGGFH----QAMHNLGGECVFASEIDKYAIETYKTNYG--VDAGINIRDVH 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+HDVL AGFPCQ FS+AG
Sbjct: 59 EEDIPEHDVLCAGFPCQAFSKAG 81


>gi|261337441|ref|ZP_05965325.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
 gi|270277829|gb|EFA23683.1| modification methylase HpaII [Bifidobacterium gallicum DSM 20093]
          Length = 442

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
            +  DLF GIGGIR        H      FSSE N +S +TY+ N+     + GDI ++ 
Sbjct: 73  FRTIDLFAGIGGIRRGFATAGGHA----VFSSEWNEFSTRTYRTNYGFAETMAGDITQVD 128

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             DIPD DV+LAGFPCQPFS AG
Sbjct: 129 ANDIPDCDVVLAGFPCQPFSLAG 151


>gi|327403407|ref|YP_004344245.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327318915|gb|AEA43407.1| DNA-cytosine methyltransferase [Fluviicola taffensis DSM 16823]
          Length = 422

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL L+    +   +C F+SE +  + KTYQANF   + FGDI K  T
Sbjct: 97  FKFIDLFAGIGGFRLALQ----NLGGKCVFTSEWDEQAKKTYQANFG-EIPFGDITKDST 151

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IPD  DVL  GFPCQ FS AG
Sbjct: 152 KAFIPDGFDVLCGGFPCQAFSIAG 175


>gi|322383485|ref|ZP_08057261.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321152224|gb|EFX45054.1| hypothetical protein PL1_3347 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 425

 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M    +LF GIGG R  L+Q        C F+SEI+ ++  +Y+A +     + GDI KI
Sbjct: 1  MFTYVELFAGIGGFRSALDQ----LGGICTFASEIDKFATISYRAMYDGAPELHGDITKI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +D+P+HD+L+ GFPCQ FS AG
Sbjct: 57 DAKDVPEHDLLVGGFPCQAFSVAG 80


>gi|119484300|ref|ZP_01618917.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
 gi|119457774|gb|EAW38897.1| modification methylase NlaIV [Lyngbya sp. PCC 8106]
          Length = 449

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          MLK  DLF GIGG+RL  E+         EC  +SEI+  + + Y  NF   +  GDI +
Sbjct: 1  MLKFIDLFAGIGGLRLGFERGIASLGLRGECLLASEIDAEASQVYSQNF-LHVPEGDIRQ 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK+  +P HDVLLAGFPCQ FS AG
Sbjct: 60 IKS--LPKHDVLLAGFPCQSFSYAG 82


>gi|315931535|gb|EFV10502.1| DNA (cytosine-5) methyltransferase [Campylobacter jejuni subsp.
          jejuni 327]
          Length = 284

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF GIGGIR+  +  F  + +E  FSSEI+ ++ +TY  NF N L  GDI +I  
Sbjct: 8  LKAIDLFAGIGGIRIGFKNIFQEK-LEFVFSSEIDKFACQTYFCNF-NELPHGDITQINE 65

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP H++LLAGFPCQ FS AG
Sbjct: 66 NNIPKHNILLAGFPCQAFSIAG 87


>gi|48243617|gb|AAT40769.1| putative DNA methylase [Haemophilus influenzae]
          Length = 293

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG+ L  +Q          ++++ +  +V+TY+ N     + GDI KI +
Sbjct: 5  LTVISLFSGAGGLDLGFKQA----GFNLIWANDFDKDAVETYKENIGKECVLGDITKIPS 60

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP+ DV++ GFPCQ FS A
Sbjct: 61 SEIPNADVMIGGFPCQGFSMA 81


>gi|291283137|ref|YP_003499955.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209766674|gb|ACI81649.1| DNA cytosine methylase [Escherichia coli]
 gi|290763010|gb|ADD56971.1| DNA-cytosine methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 472

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF G+GGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 87  FRFIDLFAGVGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|323650448|gb|ADX97301.1| M.Fnu4HI [Fusobacterium nucleatum]
          Length = 351

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT +    +  + +E +  + +T++ NF N L   DI ++ 
Sbjct: 1  MYKVASLFAGVGGIDLGFEQTGH---FKTVWXNEYDDKARETFRCNFSNKLNENDIREVD 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q+IPD D+LL+GFPC  FS AG
Sbjct: 58 VQEIPDIDILLSGFPCTSFSVAG 80


>gi|157368818|ref|YP_001476807.1| DNA cytosine methylase [Serratia proteamaculans 568]
 gi|157320582|gb|ABV39679.1| DNA-cytosine methyltransferase [Serratia proteamaculans 568]
          Length = 491

 Score =  126 bits (319), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +V+TY+AN+     +     DI 
Sbjct: 112 FRFIDLFAGIGGIRKGFEE----IGGQCVFTSEWNKEAVRTYKANWYCDPAHHKFNSDIR 167

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           +I                  ++IPDHDVLLAGFPCQPFS AG
Sbjct: 168 EITLSENDDISDQEAYKNIDKEIPDHDVLLAGFPCQPFSLAG 209


>gi|156933419|ref|YP_001437335.1| DNA cytosine methylase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531673|gb|ABU76499.1| hypothetical protein ESA_01237 [Cronobacter sakazakii ATCC BAA-894]
          Length = 481

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 98  FRFIDLFAGIGGIRSGFEAA----GGQCVFTSEWNKHAVRTYKANWYCDPQQHQFNEDIR 153

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 154 DVTLSHKPEISDEAAAEHIRACIPQHDVLLAGFPCQPFSLAG 195


>gi|315637499|ref|ZP_07892709.1| modification methylase EcoRII [Arcobacter butzleri JV22]
 gi|315478217|gb|EFU68940.1| modification methylase EcoRII [Arcobacter butzleri JV22]
          Length = 326

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIR   E+ F   + E  F+SE++ Y+   Y  N+ N   +GDI KI  
Sbjct: 20 YKFIDLFAGIGGIRTGFEKVFKEES-EFVFASELDRYAQIAYFENY-NEKPYGDITKINE 77

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP+HD++LAGFPCQ FS AG
Sbjct: 78 EDIPNHDIVLAGFPCQAFSIAG 99


>gi|291463698|pdb|3LX6|A Chain A, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
 gi|291463699|pdb|3LX6|B Chain B, Structure Of Probable Cytosine-Specific Methyltransferase
           From Shigella Flexneri
          Length = 410

 Score =  126 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 27  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 82

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 83  DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 124


>gi|225858823|ref|YP_002740333.1| methyl transferase [Streptococcus pneumoniae 70585]
 gi|225720620|gb|ACO16474.1| methyl transferase [Streptococcus pneumoniae 70585]
          Length = 451

 Score =  126 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAMFKTEEEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             DI       DV+  GFPCQ FS AG
Sbjct: 57 TDHDIRQFRGQVDVICGGFPCQAFSLAG 84


>gi|323977859|gb|EGB72945.1| DNA-cytosine methyltransferase [Escherichia coli TW10509]
          Length = 472

 Score =  126 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANYYCDPAVHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGIGDDAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|319746106|gb|EFV98380.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 458

 Score =  126 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|294646710|ref|ZP_06724334.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294807186|ref|ZP_06766001.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|292637950|gb|EFF56344.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CC 2a]
 gi|294445609|gb|EFG14261.1| DNA (cytosine-5-)-methyltransferase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 445

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
               DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF     FGDI K + 
Sbjct: 113 FTFIDLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANFGEMP-FGDITKEVT 167

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
              IP   D+L AGFPCQPFS AG
Sbjct: 168 KSYIPQYFDILCAGFPCQPFSIAG 191


>gi|323968376|gb|EGB63783.1| DNA-cytosine methyltransferase [Escherichia coli M863]
 gi|327253092|gb|EGE64746.1| DNA-cytosine methyltransferase [Escherichia coli STEC_7v]
          Length = 472

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTSEWNKHAVRTYKANYYCDPAVHHFNEDIR 142

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHKEGIGDDAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|114571596|ref|YP_758276.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
 gi|114342058|gb|ABI67338.1| DNA-cytosine methyltransferase [Maricaulis maris MCS10]
          Length = 406

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
            +  DLF GIGG+RL  E        +C F+SE + +S +TY+ANF    +    GDI  
Sbjct: 66  FRFIDLFAGIGGLRLGFEA----IGGKCVFTSEWDVHSQRTYRANFLDDDSHTFAGDIRP 121

Query: 59  I--KTQDIPDHDVLLAGFPCQPFSQAG 83
                  +P+HDVLLAGFPCQPFS AG
Sbjct: 122 YGTDPSKVPEHDVLLAGFPCQPFSLAG 148


>gi|157145245|ref|YP_001452564.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157082450|gb|ABV12128.1| hypothetical protein CKO_00981 [Citrobacter koseri ATCC BAA-895]
          Length = 477

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFVDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYYCDPQRHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHRDGVSDSEAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|307570754|emb|CAR83933.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
 gi|307572166|emb|CAR85345.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes L99]
          Length = 426

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +E+  +    EC    EI+ ++ K+YQA           DI K+
Sbjct: 1  MKFLDLFAGIGGFRLGMERAGH----ECVGYVEIDKFARKSYQAIHDTEGEWTREDITKV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 TDEEWRTLRGTVDIICGGFPCQSFSIAG 84


>gi|307152045|ref|YP_003887429.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982273|gb|ADN14154.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 323

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+  LF G GG+ L  +        +  ++++I+  + +TY+ N  + +I  D+  I 
Sbjct: 1  MIKVISLFSGCGGMDLGFKWA----GYQIIWANDIDHDACETYKRNIGDHIIKDDVKNIN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
           + +PD D++L GFPCQ FS 
Sbjct: 57 FEQLPDCDLILGGFPCQDFSM 77


>gi|85709931|ref|ZP_01040996.1| Type II restriction-modification system methylation subunit
          [Erythrobacter sp. NAP1]
 gi|85688641|gb|EAQ28645.1| Type II restriction-modification system methylation subunit
          [Erythrobacter sp. NAP1]
          Length = 370

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGG+R+  ++       EC FSSE + ++  TY+ NF +    GDI KI  
Sbjct: 22 FTFIDLFAGIGGMRIPFDE----LGGECTFSSEWDKFAQDTYELNFGHRPN-GDITKIDA 76

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++  HD+LL GFPCQ FS AG
Sbjct: 77 SEVGAHDILLGGFPCQAFSNAG 98


>gi|312863775|ref|ZP_07724013.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
          F0396]
 gi|311101311|gb|EFQ59516.1| DNA (cytosine-5-)-methyltransferase [Streptococcus vestibularis
          F0396]
          Length = 454

 Score =  126 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|296538000|gb|ADH30019.1| EcoRII cytosine methylase [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|160431610|ref|YP_001551777.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin]
 gi|298206539|ref|YP_003717476.1| EcoRII modification enzyme [Escherichia coli]
 gi|159885479|dbj|BAF93082.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin]
 gi|296537944|gb|ADH29964.1| EcoRII modification enzyme [Escherichia coli O25b:H4 str. EC958]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|133756232|ref|YP_001096382.1| DNA cytosine methylase [Escherichia coli]
 gi|110084067|gb|ABG49221.1| hypothetical protein [Escherichia coli]
          Length = 566

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 185 FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 240

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 241 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 282


>gi|145638078|ref|ZP_01793692.1| putative type II 5-cytosoine methyltransferase [Haemophilus
          influenzae PittHH]
 gi|145268726|gb|EDK08715.1| putative type II 5-cytosoine methyltransferase [Haemophilus
          influenzae PittHH]
          Length = 226

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG+ L  +Q          ++++ +  +V+TY+ N     + GDI KI +
Sbjct: 6  LTVISLFSGAGGLDLGFKQA----GFNLIWANDFDKDAVETYKENIGKECVLGDITKIPS 61

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP+ DV++ GFPCQ FS A
Sbjct: 62 SEIPNADVMIGGFPCQGFSMA 82


>gi|167761084|ref|ZP_02433211.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC
          35704]
 gi|167661318|gb|EDS05448.1| hypothetical protein CLOSCI_03482 [Clostridium scindens ATCC
          35704]
          Length = 405

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
              DLF GIGG      Q  +     C F+SEI+ Y ++TYQ N+  ++ I  DI  + 
Sbjct: 23 FTFIDLFSGIGGFH----QAMSSLGGRCVFASEIDKYCIETYQENYGMDSGI--DIRNVD 76

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP HDVL AGFPCQ FS+AG
Sbjct: 77 EKDIPPHDVLCAGFPCQAFSKAG 99


>gi|307139342|ref|ZP_07498698.1| DNA cytosine methylase [Escherichia coli H736]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 193


>gi|113706802|ref|YP_724464.1| DNA cytosine methylase [Escherichia coli]
 gi|190576899|ref|YP_001966231.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|194433606|ref|ZP_03065883.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|209901141|ref|YP_002286923.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|209901236|ref|YP_002287017.1| DNA cytosine methylase [Klebsiella pneumoniae]
 gi|215528089|ref|YP_002332862.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|302141639|ref|YP_003813098.1| EcoRII methylase [Klebsiella pneumoniae]
 gi|127448|sp|P05101|MTE2_ECOLX RecName: Full=Modification methylase EcoRII; Short=M.EcoRII;
           AltName: Full=Cytosine-specific methyltransferase EcoRII
 gi|41317|emb|CAA28725.1| unnamed protein product [Escherichia coli HB101]
 gi|109390538|gb|ABG33840.1| EcoRII modification enzyme [Escherichia coli]
 gi|110264483|gb|ABG56846.1| M.EcoRII DNA methylase [Klebsiella pneumoniae]
 gi|165928612|gb|ABY74380.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|194418198|gb|EDX34290.1| modification methylase EcoRII [Shigella dysenteriae 1012]
 gi|197092209|gb|ACH42172.1| EcoRII cytosine methylase [Klebsiella pneumoniae]
 gi|209574187|gb|ACI63075.1| modification methylase [Klebsiella pneumoniae]
 gi|209574298|gb|ACI63184.1| modification methylase [Klebsiella pneumoniae]
 gi|296033904|gb|ADG84867.1| EcoRII methylase [Klebsiella pneumoniae]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 193


>gi|323960520|gb|EGB56149.1| DNA-cytosine methyltransferase [Escherichia coli H489]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 151

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 193


>gi|297622183|ref|YP_003675732.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
 gi|296492002|gb|ADH29504.1| EcoRII cytosine-methyltransferase [Klebsiella oxytoca KOX105]
          Length = 491

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 110 FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 165

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 207


>gi|227485932|ref|ZP_03916248.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
 gi|227235977|gb|EEI85992.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus lactolyticus
          ATCC 51172]
          Length = 358

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G+GG    L       + +  F+SEI+ ++ K+Y +NF    ++GDI KI  
Sbjct: 5  IKIASLFSGVGGFEEGLRLA--KIDFDLVFASEIDRFAQKSYSSNFDTDNLYGDITKINE 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IPDHD+LLAGFPCQ FS AG
Sbjct: 63 KNIPDHDLLLAGFPCQSFSIAG 84


>gi|262043463|ref|ZP_06016586.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039205|gb|EEW40353.1| DNA (cytosine-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|238895488|ref|YP_002920223.1| DNA cytosine methylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330000908|ref|ZP_08303852.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238547805|dbj|BAH64156.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537840|gb|EGF64032.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|152970972|ref|YP_001336081.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955821|gb|ABR77851.1| DNA cytosine methylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 477

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSQRSDVSDEEAARHIRESIPQHDVLLAGFPCQPFSLAG 189


>gi|25011412|ref|NP_735807.1| hypothetical protein gbs1370 [Streptococcus agalactiae NEM316]
 gi|24412950|emb|CAD47029.1| unknown [Streptococcus agalactiae NEM316]
          Length = 450

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL LE     +  EC    EI+ ++ K+Y+A F     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLES----QGHECLGFCEIDKFARKSYKAIFETEGEVEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRKFRGQVDIICVGFPCQAFSLAG 84


>gi|319745928|gb|EFV98213.1| type II DNA modification methyltransferase [Streptococcus
          agalactiae ATCC 13813]
          Length = 454

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFKQLRGQVDIICGGFPCQAFSLAG 87


>gi|111607698|gb|ABH10736.1| DNA methyltransferase [Flavobacterium sp. 4H]
          Length = 408

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-K 60
            K  DLF GIGG RL L+    +   +C F+SE N  + KTY+ NF     FGDI K   
Sbjct: 95  FKFIDLFAGIGGFRLALQ----NVGGKCVFTSEWNNEAQKTYRENFGEVP-FGDITKERN 149

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
              IP+  D+L AGFPCQ FS AG
Sbjct: 150 KNYIPEKFDILCAGFPCQAFSIAG 173


>gi|159027646|emb|CAO89510.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 728

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF GIGG RL  E        +C +S EI+    K Y  NF   +   DI KI  
Sbjct: 6  LRFIDLFAGIGGFRLAFES----VGYDCVYSCEIDENCRKVYFNNF-QEIPDQDIRKIAI 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD +VL AGFPCQPFS +G
Sbjct: 61 HDLPDFEVLTAGFPCQPFSISG 82


>gi|331643338|ref|ZP_08344469.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
 gi|331036809|gb|EGI09033.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) (M.EcoRII) [Escherichia coli H736]
          Length = 491

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 110 FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 165

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 207


>gi|218701133|ref|YP_002408762.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218371119|emb|CAR18947.1| Modification methylase EcoRII (M.EcoRII) (Cytosine-specific
           methyltransferase EcoRII) [Escherichia coli IAI39]
          Length = 491

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 110 FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKDAVRTYKANWFNDEQVHKFNLDIR 165

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 166 EVTLSDKTDVLETDAYAYIDEHVPDHDVLLAGFPCQPFSLAG 207


>gi|260598469|ref|YP_003211040.1| DNA cytosine methylase [Cronobacter turicensis z3032]
 gi|260217646|emb|CBA31957.1| DNA-cytosine methyltransferase [Cronobacter turicensis z3032]
          Length = 450

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 67  FRFIDLFAGIGGIRSGFEAA----GGQCVFTSEWNKHAVRTYKANWYCDPQLHQFNEDIR 122

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 123 DVTLSHKPEVSDEAAADHIRACIPPHDVLLAGFPCQPFSLAG 164


>gi|53714966|ref|YP_100958.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
 gi|52217831|dbj|BAD50424.1| C-5 cytosine-specific DNA-methylase [Bacteroides fragilis YCH46]
          Length = 431

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF     FGDI K  T
Sbjct: 113 FTFIDLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANFGEMP-FGDITKEMT 167

Query: 62  QD-IP-DHDVLLAGFPCQPFSQAG 83
           +  IP + DVL AGFPCQPFS AG
Sbjct: 168 KSYIPRNFDVLCAGFPCQPFSIAG 191


>gi|311977229|gb|ADQ20489.1| M.AspCNI [Acinetobacter sp. 1690]
          Length = 327

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF G GG+ L   Q       +  ++++IN ++ KTY  N  + ++ GDI +I  
Sbjct: 4  LTAISLFSGCGGMDLGFVQA----GFDVLWANDINGFACKTYAHNIGDHIVHGDITEIDY 59

Query: 62 QDIPDHDVLLAGFPCQPFSQ 81
          Q IP  D+++ GFPCQ FS 
Sbjct: 60 QSIPTADIIIGGFPCQDFSM 79


>gi|161617789|ref|YP_001591754.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161367153|gb|ABX70921.1| hypothetical protein SPAB_05653 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 474

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|127420|sp|P19888|MTBA_BACAR RecName: Full=Modification methylase BanI; Short=M.BanI; AltName:
          Full=Cytosine-specific methyltransferase BanI
 gi|216242|dbj|BAA00613.1| BanI modification methylase [Aneurinibacillus aneurinilyticus]
          Length = 428

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF GIGGIR+  E+      +  EC  SSEI+  + +TY  NF      GDI +I
Sbjct: 3  IKFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEPQ-GDIHEI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           +   P+ D LLAGFPCQPFS AG
Sbjct: 62 TS--FPEFDFLLAGFPCQPFSYAG 83


>gi|168234623|ref|ZP_02659681.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194736513|ref|YP_002117411.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712015|gb|ACF91236.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291717|gb|EDY31067.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 474

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|261340425|ref|ZP_05968283.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288317516|gb|EFC56454.1| DNA (cytosine-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 477

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 92  FRFIDLFAGIGGIRHGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPDEHHFNADIR 147

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHKSGVTDEEAAHHIRQAIPAHDVLLAGFPCQPFSLAG 189


>gi|66391578|ref|YP_239103.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
 gi|62288666|gb|AAX78649.1| hypothetical protein RB43ORF127c [Enterobacteria phage RB43]
          Length = 302

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  G+GG+R+  ++ F+   VEC  ++EI+ ++ +TY AN+    + GD+  I  
Sbjct: 1  MKLIDLCAGVGGVRMGFDRAFD--GVECVLTAEIDKFAQQTYAANWGGDNLEGDLFAIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NKVPDHDILLAGFPCQAFSKAG 80


>gi|332523411|ref|ZP_08399663.1| modification methylase HpaII [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314675|gb|EGJ27660.1| modification methylase HpaII [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 451

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYKTEGEIEFHDIRQV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|223932228|ref|ZP_03624232.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223899209|gb|EEF65566.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCVGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|300931174|ref|ZP_07146520.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300461007|gb|EFK24500.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 187-1]
          Length = 477

 Score =  125 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGI    E        +C F+SE N ++V+TY+AN    P T  F  DI 
Sbjct: 92  FRFIDLFAGIGGICRGFES----IGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP+HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHKEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 189


>gi|237713924|ref|ZP_04544405.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262409168|ref|ZP_06085712.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
 gi|229446080|gb|EEO51871.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. D1]
 gi|262352915|gb|EEZ02011.1| C-5 cytosine-specific DNA-methylase [Bacteroides sp. 2_1_22]
          Length = 361

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
               DLF G+GG RL ++     +  +C FSSE N Y+ KTY ANF     FGDI K + 
Sbjct: 29  FTFIDLFAGMGGFRLAMQA----QGGKCVFSSEWNKYAQKTYLANFGEMP-FGDITKEVT 83

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
              IP   D+L AGFPCQPFS AG
Sbjct: 84  KSYIPQYFDILCAGFPCQPFSIAG 107


>gi|169786848|ref|YP_001700742.1| modification methylase (cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter baumannii
           SDF]
 gi|169150765|emb|CAP02959.1| modification methylase (Cytosine-specific
           methyltransferase)(HpaIIM-like) [Acinetobacter
           baumannii]
          Length = 366

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL  +    +    C FSSEI+  + KTY ANF +T  +GDI    T
Sbjct: 42  FKFIDLFAGIGGFRLAFQ----NLGGRCVFSSEIDLAAQKTYTANFGDTP-YGDITLEST 96

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +D IPD  D+L  GFPCQ FS AG
Sbjct: 97  KDAIPDNFDILCGGFPCQAFSIAG 120


>gi|161505003|ref|YP_001572115.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866350|gb|ABX22973.1| hypothetical protein SARI_03133 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 474

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|295110825|emb|CBL24778.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 311

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ L L Q  N    E  ++++I+  +V TY+ N  + ++  DI  I  
Sbjct: 1  MKIISLFSGAGGLDLGLIQAGN----EVIWANDIDKDAVATYRENIGDHIVCDDIKNINI 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           D+P+ DV++ GFPCQ FS A
Sbjct: 57 YDLPEADVVVGGFPCQGFSLA 77


>gi|291320332|ref|YP_003515594.1| modification methylase Bsp6I [Mycoplasma agalactiae]
 gi|290752665|emb|CBH40638.1| Modification methylase Bsp6I [Mycoplasma agalactiae]
          Length = 315

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT      +  +++E +  ++ TY++NF   +   DI K+ 
Sbjct: 1  MYKVGSLFAGVGGIDLGFEQTGK---FKTIWANEFDKNAILTYKSNFSTFVSNEDIRKVD 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+ D++L+GFPC  FS AG
Sbjct: 58 VRDIPEVDIILSGFPCTSFSVAG 80


>gi|157147667|ref|YP_001454986.1| DNA cytosine methylase [Citrobacter koseri ATCC BAA-895]
 gi|157084872|gb|ABV14550.1| hypothetical protein CKO_03470 [Citrobacter koseri ATCC BAA-895]
          Length = 474

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 96  FRFIDLFAGIGGIRKGFEA----IGGQCVFTSEWNKEAVRTYKANWYNDEDAHTFNLDIR 151

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 152 EVTLSGEEGISEEKAYAHIDQHIPDHDVLLAGFPCQPFSLAG 193


>gi|294155594|ref|YP_003559978.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
 gi|291600134|gb|ADE19630.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
          Length = 388

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGG      Q  ++   EC FSSEI+ Y + TY  NF  +  F DI K+  
Sbjct: 6  FKFIDLFSGIGGFH----QAMSYFGGECVFSSEIDKYCINTYFNNFNISSDF-DITKVNV 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP HD+L AGFPCQ FS+AG
Sbjct: 61 NEIPKHDLLCAGFPCQAFSKAG 82


>gi|319744417|gb|EFV96775.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 450

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            +D        D++  GFPCQ FS AG
Sbjct: 60 TDEDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|322411604|gb|EFY02512.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLIR----QGHECIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|295110826|emb|CBL24779.1| DNA-methyltransferase (dcm) [Ruminococcus obeum A2-162]
          Length = 312

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  +   +    +  +++++   +V+TY+ N  + +I  DI+KIK 
Sbjct: 1  MKVVSLFSGAGGLDLGFKMAGH----DIIWANDMYADAVETYKKNIGDHIICEDISKIKA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          +DIPD D+++ GFPCQ FS A
Sbjct: 57 EDIPDCDIIIGGFPCQGFSVA 77


>gi|290891561|ref|ZP_06554618.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
 gi|290478814|gb|EFD87481.1| hypothetical protein AWRIB429_2008 [Oenococcus oeni AWRIB429]
          Length = 382

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+   N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQAFSIAG 84


>gi|331677320|ref|ZP_08377999.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
 gi|331075055|gb|EGI46371.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli H591]
          Length = 415

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M+K  DLF G GGIRL  EQ      +  +C  SSEI+  + +TY+ NF +   + DI  
Sbjct: 1  MIKFVDLFSGTGGIRLGFEQAMKEIGLSTKCVKSSEIDKKACETYKLNF-DEESYCDIHD 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +   +    DVLLAGFPCQ FS AG
Sbjct: 60 VDIDE--SFDVLLAGFPCQAFSYAG 82


>gi|149369548|ref|ZP_01889400.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
 gi|149356975|gb|EDM45530.1| C-5 cytosine-specific DNA-methylase [unidentified eubacterium
           SCB49]
          Length = 421

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG R+ L+    +   +C F+SE + YS +TY+ANF   + FGDI + +T
Sbjct: 97  FKFIDLFAGIGGFRMALQ----NLEGKCVFTSEWDKYSKQTYKANFG-EIPFGDITRPQT 151

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IPD  DVL AGFPCQ FS AG
Sbjct: 152 KSYIPDNFDVLCAGFPCQAFSIAG 175


>gi|24527986|emb|CAD33713.1| putative DNA methylase [Escherichia coli]
          Length = 310

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L L+Q+     ++  ++++I   +V TY+ N    ++ GDIA I +
Sbjct: 1  MKVVSLFSGAGGLDLGLKQS----GLDIIWANDIYEDAVDTYKRNIGEHIVLGDIANINS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIP+ DV++ GFPCQ FS A
Sbjct: 57 SDIPNCDVVVGGFPCQGFSVA 77


>gi|322411818|gb|EFY02726.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 451

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L     ++  EC    EI+ +++K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGL----TNQGHECIGFCEIDKFAMKSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFKQLRGQVDIICGGFPCQAFSLAG 84


>gi|167035739|ref|YP_001670970.1| DNA cytosine methylase [Pseudomonas putida GB-1]
 gi|166862227|gb|ABZ00635.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
          Length = 447

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGD-IA 57
               DLF GIGGIR   EQ        C F+SE N  +V+TY+AN    P    + D I 
Sbjct: 76  FDFIDLFAGIGGIRRGFEQ----HGGRCVFTSEWNDQAVRTYKANHYSDPEHHRYNDDIR 131

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           K+   D                IPDHDVLLAGFPCQPFS AG
Sbjct: 132 KVTLSDNDDVSEQDVIASIHRQIPDHDVLLAGFPCQPFSIAG 173


>gi|295098276|emb|CBK87366.1| DNA-methyltransferase (dcm) [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 477

 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 92  FRFIDLFAGIGGIRHGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPDAHQFNADIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHKTGVSDEEAAEHIRNTIPAHDVLLAGFPCQPFSLAG 189


>gi|332361316|gb|EGJ39120.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sanguinis SK1056]
          Length = 454

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG R+ LE     +  EC    EI+ ++ K+YQA +     +   DI ++
Sbjct: 4  MKFLDLFAGIGGFRMGLES----QGHECIGYCEIDKFARKSYQAIYDTEGEIELHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 60 TDQDFRQLRGQVDIICGGFPCQAFSLAG 87


>gi|289167633|ref|YP_003445902.1| methyl transferase [Streptococcus mitis B6]
 gi|288907200|emb|CBJ22035.1| methyl transferase [Streptococcus mitis B6]
          Length = 452

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ K+Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARKSYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|310767946|gb|ADP12896.1| DNA cytosine methylase [Erwinia sp. Ejp617]
          Length = 467

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGKPEITDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 190


>gi|292488627|ref|YP_003531511.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|292899788|ref|YP_003539157.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291199636|emb|CBJ46755.1| modification methylase EcoRII [Erwinia amylovora ATCC 49946]
 gi|291554058|emb|CBA21160.1| DNA cytosine methylase [Erwinia amylovora CFBP1430]
 gi|312172770|emb|CBX81026.1| DNA cytosine methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 469

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 95  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 150

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 151 DVTLSGKPEISDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 192


>gi|2760954|gb|AAB95336.1| EaeI methyltransferase alpha subunit [Enterobacter aerogenes]
          Length = 309

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K++  F GIGG  L LE+      +E  F  EIN +  K  + N+PN  +  DI ++  
Sbjct: 9  YKVSSFFAGIGGFDLGLEKA----GMEVVFQCEINKFCQKVLRKNWPNVPLHTDITQLNA 64

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP+  V   GFPCQ  S A
Sbjct: 65 DEIPESSVWCGGFPCQDVSSA 85


>gi|161502886|ref|YP_001569998.1| DNA cytosine methylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864233|gb|ABX20856.1| hypothetical protein SARI_00944 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 476

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLEHRFNEDIR 146

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            I                    IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVGDDEAAEHIRQYIPQHDVLLAGFPCQPFSLAG 188


>gi|126698504|ref|YP_001087401.1| putative DNA methylase [Clostridium difficile 630]
 gi|115249941|emb|CAJ67761.1| putative phage DNA modification methylase [Clostridium difficile]
          Length = 357

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIA 57
          ML   DLF GIGG RL +E+  +    +C    E + ++  +Y A      +     DI 
Sbjct: 1  MLTFLDLFAGIGGFRLGMEKAGH----KCLGHCEYDKFANLSYNAMHKPKEDEWFERDIR 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +I+T++IP  DV   GFPCQ  S AG
Sbjct: 57 EIRTENIPRADVWCFGFPCQDISVAG 82


>gi|121997219|ref|YP_001002006.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
 gi|121588624|gb|ABM61204.1| DNA-cytosine methyltransferase [Halorhodospira halophila SL1]
          Length = 436

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 52/97 (53%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
               DLF G+GGIR   E    H    C FSSE + ++++TY+ANF N    I  DI +I
Sbjct: 70  FSFIDLFAGVGGIRQGFESVGGH----CVFSSEWDRFALQTYRANFGNEGEEIQTDIRQI 125

Query: 60  KT-------------QDIPDHDVLLAGFPCQPFSQAG 83
                          + IP HDVLLAGFPCQPFS AG
Sbjct: 126 TAVSDDADENSRSIDERIPQHDVLLAGFPCQPFSLAG 162


>gi|150400370|ref|YP_001324137.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
 gi|150013073|gb|ABR55525.1| DNA-cytosine methyltransferase [Methanococcus vannielii SB]
          Length = 368

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-------HRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+  LF G GG+ L  +  F        H   E  FS++I+  + +TY++NF ++ +  
Sbjct: 35  FKVISLFSGCGGMDLGFKGGFEIFKQHYEHNPYEIIFSNDISDKACRTYESNFCHSSVCA 94

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI  IK +DIP+ D+++ GFPCQ FS AG
Sbjct: 95  DIKDIKNEDIPNADIVIGGFPCQDFSHAG 123


>gi|198242597|ref|YP_002215094.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937113|gb|ACH74446.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326622842|gb|EGE29187.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 476

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|200390041|ref|ZP_03216652.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199602486|gb|EDZ01032.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 476

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|300717257|ref|YP_003742060.1| cytosine-specific methyltransferase [Erwinia billingiae Eb661]
 gi|299063093|emb|CAX60213.1| Cytosine-specific methyltransferase [Erwinia billingiae Eb661]
          Length = 466

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N YSV+TY+AN+   P+   F  DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKYSVRTYKANWYCDPDAHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  + +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGNPAVSEQQAYQHIDKQVPDHDVLLAGFPCQPFSLAG 190


>gi|220929948|ref|YP_002506857.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000276|gb|ACL76877.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 338

 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF G+GG R+ LE        +C +S+E +    K Y  NF + +  GDI +I  
Sbjct: 12 FKFIDLFAGLGGFRIALES----LGAKCVYSNEWDKPVRKVYTDNFGD-IPEGDITQINE 66

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP+HD+L AGFPCQ FS +G
Sbjct: 67 NSIPEHDILCAGFPCQAFSISG 88


>gi|313667088|gb|ADR72987.1| M2.BsmFI [Geobacillus stearothermophilus]
          Length = 365

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF G GG+ L       +      ++ +I+  +V TY+ N  + +I GDI KI+ +
Sbjct: 4  TVVSLFSGGGGLDLGF----KNSGFNIIWAIDIDKDAVSTYKENLGDHIILGDITKIQEK 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP  DV++ G PCQ FS  G
Sbjct: 60 DIPKADVVIGGPPCQSFSLVG 80


>gi|168259722|ref|ZP_02681695.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205351069|gb|EDZ37700.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|319744643|gb|EFV96990.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus agalactiae ATCC 13813]
          Length = 451

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL LE     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|16765328|ref|NP_460943.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167993566|ref|ZP_02574660.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|16420526|gb|AAL20902.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205328427|gb|EDZ15191.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261247157|emb|CBG24980.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993981|gb|ACY88866.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158505|emb|CBW18015.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912981|dbj|BAJ36955.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224636|gb|EFX49699.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130270|gb|ADX17700.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332988880|gb|AEF07863.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|161613440|ref|YP_001587405.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205352316|ref|YP_002226117.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856496|ref|YP_002243147.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|161362804|gb|ABX66572.1| hypothetical protein SPAB_01156 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205272097|emb|CAR36949.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708299|emb|CAR32602.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326627365|gb|EGE33708.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168462467|ref|ZP_02696398.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443436|ref|YP_002041256.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|238912436|ref|ZP_04656273.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|194402099|gb|ACF62321.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195634356|gb|EDX52708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|167552776|ref|ZP_02346527.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322616|gb|EDZ10455.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168239231|ref|ZP_02664289.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734985|ref|YP_002115026.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204931362|ref|ZP_03222061.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194710487|gb|ACF89708.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288080|gb|EDY27467.1| modification methylase EcoRII (Cytosine-specificmethyltransferase
           EcoRII) [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204319845|gb|EDZ05054.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168234164|ref|ZP_02659222.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168821682|ref|ZP_02833682.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194470868|ref|ZP_03076852.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197263635|ref|ZP_03163709.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|194457232|gb|EDX46071.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197241890|gb|EDY24510.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331847|gb|EDZ18611.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205341769|gb|EDZ28533.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320085391|emb|CBY95172.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|56413096|ref|YP_150171.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362022|ref|YP_002141659.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127353|gb|AAV76859.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093499|emb|CAR58960.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 476

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|225856779|ref|YP_002738290.1| methyl transferase [Streptococcus pneumoniae P1031]
 gi|225724445|gb|ACO20297.1| methyl transferase [Streptococcus pneumoniae P1031]
          Length = 452

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ K+Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARKSYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        D++  GFPCQ FS AG
Sbjct: 57 SDAEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|146318633|ref|YP_001198345.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|146320840|ref|YP_001200551.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751755|ref|YP_003024896.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|253755540|ref|YP_003028680.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|145689439|gb|ABP89945.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 05ZYH33]
 gi|145691646|gb|ABP92151.1| C-5 cytosine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251816044|emb|CAZ51664.1| C-5 cytosine-specific DNA methylase [Streptococcus suis SC84]
 gi|251818004|emb|CAZ55786.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|322616984|gb|EFY13892.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618223|gb|EFY15115.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625894|gb|EFY22713.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626346|gb|EFY23156.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632761|gb|EFY29506.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639103|gb|EFY35796.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640419|gb|EFY37075.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647220|gb|EFY43719.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322648528|gb|EFY44979.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655540|gb|EFY51848.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322660318|gb|EFY56556.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662999|gb|EFY59206.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668184|gb|EFY64343.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674057|gb|EFY70151.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675591|gb|EFY71665.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682998|gb|EFY79014.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686692|gb|EFY82670.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195420|gb|EFZ80600.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198052|gb|EFZ83169.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204476|gb|EFZ89482.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207566|gb|EFZ92514.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210995|gb|EFZ95855.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217551|gb|EGA02270.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323226697|gb|EGA10894.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231573|gb|EGA15686.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236016|gb|EGA20095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240586|gb|EGA24629.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245478|gb|EGA29478.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247596|gb|EGA31547.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323254424|gb|EGA38240.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257764|gb|EGA41444.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262129|gb|EGA45692.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266252|gb|EGA49742.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270729|gb|EGA54168.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 476

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|322376648|ref|ZP_08051141.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sp. M334]
 gi|321282455|gb|EFX59462.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus sp. M334]
          Length = 452

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ K+Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARKSYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVVCGGFPCQAFSIAG 84


>gi|218439646|ref|YP_002377975.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218172374|gb|ACK71107.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 320

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLFCGIGG RL + Q     N +  C FSS+I+  +   Y+ NF + L  GDI KI
Sbjct: 13 IKYVDLFCGIGGFRLAVNQVSEGYNFKSICVFSSDIDGDAQTVYRENFGD-LPEGDITKI 71

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + IP H +LLAGFPCQPFS  G
Sbjct: 72 PAEMIPHHHLLLAGFPCQPFSICG 95


>gi|312386601|emb|CBY05924.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|169832810|ref|YP_001694558.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995312|gb|ACA35924.1| methyl transferase [Streptococcus pneumoniae Hungary19A-6]
          Length = 452

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|197251440|ref|YP_002146032.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197215143|gb|ACH52540.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 476

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|16760934|ref|NP_456551.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141374|ref|NP_804716.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213424982|ref|ZP_03357732.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|289829483|ref|ZP_06547095.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25286126|pir||AH0754 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16503231|emb|CAD05739.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137001|gb|AAO68565.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 476

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|78778033|ref|YP_394348.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
          deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
 gi|78498573|gb|ABB45113.1| DNA (cytosine-5-)-methyltransferase., Type II site-specific
          deoxyribonuclease [Sulfurimonas denitrificans DSM 1251]
          Length = 657

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--------NTLIF 53
              DLF GIGG      Q  +    EC F+SEI+ Y+ KTY+ NF         N L  
Sbjct: 6  FTFIDLFAGIGGFH----QAMHELGGECVFASEIDIYARKTYKYNFKKYSPELFENGLFN 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI  I  ++IPD D+L AGFPCQPFSQAG
Sbjct: 62 EDIKTIMPEEIPDFDLLCAGFPCQPFSQAG 91


>gi|188533556|ref|YP_001907353.1| DNA cytosine methylase [Erwinia tasmaniensis Et1/99]
 gi|188028598|emb|CAO96460.1| DNA-cytosine methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 469

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N +SV+TY+AN+           DI 
Sbjct: 95  FRFIDLFAGIGGIRSGFEA----IGGQCVFTSEWNKHSVRTYKANWYCDETQHRFNQDIR 150

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q IPDHDVLLAGFPCQPFS AG
Sbjct: 151 DVTLSGDPQVDDREAYQHIQQQIPDHDVLLAGFPCQPFSLAG 192


>gi|154149305|ref|YP_001405677.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          hominis ATCC BAA-381]
 gi|153805314|gb|ABS52321.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          hominis ATCC BAA-381]
          Length = 88

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M K  DLF GIGGIRL  +Q F   +++  F SE++  +V+TY+ANF +++ + GDI K+
Sbjct: 1  MYKSIDLFAGIGGIRLGFDQAFGD-DIKTVFISELDEKAVETYKANFNDSIDVVGDITKV 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + IP+HD+LLAGFPCQ FS AG
Sbjct: 60 DEKKIPEHDILLAGFPCQAFSLAG 83


>gi|332075476|gb|EGI85945.1| modification methylase HpaII [Streptococcus pneumoniae GA41301]
          Length = 452

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +      + DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGEVDVICGGFPCQAFSIAG 84


>gi|296103580|ref|YP_003613726.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058039|gb|ADF62777.1| DNA cytosine methylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 471

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P+   F  DI 
Sbjct: 86  FRFIDLFAGIGGIRHGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPDAHQFNADIR 141

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q+IP HDVLLAGFPCQPFS AG
Sbjct: 142 DVTLSHKSGVSDEEAAEHIRQNIPAHDVLLAGFPCQPFSLAG 183


>gi|307152213|ref|YP_003887597.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982441|gb|ADN14322.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 317

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLFCGIGG R+   Q     N++  C FSS+I+P + + Y   F      GDI KI
Sbjct: 13 IRYIDLFCGIGGFRIAASQVCLEYNIKPQCVFSSDIDPDAQQVYSKYFGEKP-AGDITKI 71

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              IPDH +LLAGFPCQPFS  G
Sbjct: 72 PADSIPDHHLLLAGFPCQPFSICG 95


>gi|255591450|ref|XP_002535514.1| cytosine-specific methyltransferase, putative [Ricinus communis]
 gi|223522828|gb|EEF26867.1| cytosine-specific methyltransferase, putative [Ricinus communis]
          Length = 206

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 8/85 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAK 58
           +I DLF GIGGIR+  E        +C F+SE N +S KTYQ NF +      + GDI  
Sbjct: 29  RIIDLFAGIGGIRMGFEA----HGGQCVFTSEWNDFSQKTYQENFRDGTAQHALIGDIVT 84

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
              + +P+HD+LL GFPCQPFS AG
Sbjct: 85  FPAEAVPEHDILLGGFPCQPFSIAG 109


>gi|146312197|ref|YP_001177271.1| DNA cytosine methylase [Enterobacter sp. 638]
 gi|145319073|gb|ABP61220.1| DNA-cytosine methyltransferase [Enterobacter sp. 638]
          Length = 471

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P+T  F  DI 
Sbjct: 86  FRFVDLFAGIGGIRHGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPHTHQFNEDIR 141

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 142 DVTLSHKSGVTDAEAADHIRRTIPAHDVLLAGFPCQPFSLAG 183


>gi|224583511|ref|YP_002637309.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468038|gb|ACN45868.1| DNA-cytosine methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 476

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|168244842|ref|ZP_02669774.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449372|ref|YP_002046042.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407676|gb|ACF67895.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205336375|gb|EDZ23139.1| modification methylase EcoRII [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 476

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|9622224|gb|AAF89681.1| cytosine-specific methyltransferase [Bacillus sp. LU11]
          Length = 365

 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF G GG+ L       +      ++ +I+  +V TY+ N  + +I GDI KI+ +
Sbjct: 4  TVVSLFSGGGGLDLGF----KNSGFNIIWAIDIDKDAVLTYKENLGDHIILGDITKIQEK 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+ DV++ G PCQ FS  G
Sbjct: 60 DIPEADVVIGGPPCQSFSLVG 80


>gi|256545597|ref|ZP_05472956.1| modification methylase HaeIII (cytosine-specificmethyltransferase
          HaeIII) [Anaerococcus vaginalis ATCC 51170]
 gi|256398722|gb|EEU12340.1| modification methylase HaeIII (cytosine-specificmethyltransferase
          HaeIII) [Anaerococcus vaginalis ATCC 51170]
          Length = 340

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  ++       E   ++E +    +TY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDLGFQKA----GYEIVAANEFDKTIWETYEKNHEAKLIKGDIFKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P+ D ++ G PCQ +S+AG
Sbjct: 57 DEFPECDGIIGGPPCQSWSEAG 78


>gi|322385307|ref|ZP_08058952.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
 gi|321270566|gb|EFX53481.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           cristatus ATCC 51100]
          Length = 480

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 29  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 84

Query: 60  KTQDIP----DHDVLLAGFPCQPFSQAG 83
              +        DV+  GFPCQ FS AG
Sbjct: 85  SDDEFKKLRGKVDVICGGFPCQAFSIAG 112


>gi|183217290|gb|ACC59209.1| methyltransferase [Streptococcus pneumoniae]
 gi|321156848|emb|CBW38835.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|268611036|ref|ZP_06144763.1| prophage LambdaSa2, type II DNA modification methyltransferase,
          putative [Ruminococcus flavefaciens FD-1]
          Length = 425

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
          M++  D+F GIGG R  LE+       EC    EI+ ++ + Y+A +     + + D  K
Sbjct: 1  MIRYLDMFAGIGGFRSGLERVG---GFECVGYCEIDKFAKQAYEALYDTSKEVYYDDATK 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  +D+PD D++  GFPCQ FS AG
Sbjct: 58 IVPEDLPDIDLICGGFPCQSFSIAG 82


>gi|157419765|gb|ABV55454.1| DNA methylase [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 451

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|22537444|ref|NP_688295.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          2603V/R]
 gi|76797962|ref|ZP_00780222.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          18RS21]
 gi|77406085|ref|ZP_00783160.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          H36B]
 gi|313890485|ref|ZP_07824113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|22534321|gb|AAN00168.1|AE014251_12 C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          2603V/R]
 gi|76586686|gb|EAO63184.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          18RS21]
 gi|77175318|gb|EAO78112.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          H36B]
 gi|313121002|gb|EFR44113.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|323127117|gb|ADX24414.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 451

 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|290508755|ref|ZP_06548126.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289778149|gb|EFD86146.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 477

 Score =  123 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFVDLFAGIGGIRNGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            +                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 189


>gi|288934555|ref|YP_003438614.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
 gi|288889264|gb|ADC57582.1| DNA-cytosine methyltransferase [Klebsiella variicola At-22]
          Length = 466

 Score =  123 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 81  FRFVDLFAGIGGIRNGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 136

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            +                  + IP HDVLLAGFPCQPFS AG
Sbjct: 137 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 178


>gi|206577074|ref|YP_002237693.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206566132|gb|ACI07908.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 477

 Score =  123 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 92  FRFVDLFAGIGGIRNGFEA----IGGQCVFTSEWNKHAVRTYKANWYCDPQQHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            +                  + IP HDVLLAGFPCQPFS AG
Sbjct: 148 DVTLSHRPDVSDEEAAQHIRETIPQHDVLLAGFPCQPFSLAG 189


>gi|225869346|ref|YP_002745294.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
          zooepidemicus]
 gi|225702622|emb|CAX00673.1| C-5 cytosine-specific DNA methylase [Streptococcus equi subsp.
          zooepidemicus]
          Length = 451

 Score =  123 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  +C    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLTR----QGHKCIGFCEIDKFARKSYKAIYETKGEIEFHDIRQV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQMDIICGGFPCQAFSLAG 84


>gi|332361999|gb|EGJ39801.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK49]
          Length = 480

 Score =  123 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           +K  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 29  MKFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 84

Query: 60  KTQDIP----DHDVLLAGFPCQPFSQAG 83
              +        D++  GFPCQ FS AG
Sbjct: 85  SDDEFKKLRGKVDIICGGFPCQAFSIAG 112


>gi|283785730|ref|YP_003365595.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
 gi|282949184|emb|CBG88792.1| DNA-cytosine methyltransferase [Citrobacter rodentium ICC168]
          Length = 477

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P +  F  DI 
Sbjct: 92  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYYCDPASHRFNEDIR 147

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P HDVLLAGFPCQPFS AG
Sbjct: 148 DITLSHREGISDRQAAEHIRQHVPQHDVLLAGFPCQPFSLAG 189


>gi|4063721|gb|AAC98421.1| methyl transferase [Streptococcus pneumoniae]
          Length = 452

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|62180565|ref|YP_216982.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128198|gb|AAX65901.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715041|gb|EFZ06612.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 476

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|253755079|ref|YP_003028219.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
 gi|251817543|emb|CAZ55290.1| C-5 cytosine-specific DNA methylase [Streptococcus suis BM407]
          Length = 451

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        D++  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVDIICGGFPCQAFSLAG 84


>gi|67458530|ref|YP_246154.1| site-specific DNA methylase [Rickettsia felis URRWXCal2]
 gi|67004063|gb|AAY60989.1| Site-specific DNA methylase [Rickettsia felis URRWXCal2]
          Length = 105

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K  DLFCGIGG R  LE     + +EC FSS+I+    + Y+ NF +   +GDI +I 
Sbjct: 1  MYKFIDLFCGIGGFRKALEA----KGLECVFSSDIDKDVQEAYKRNFGDKP-YGDITEIS 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP HD+L AGFPCQ FS +G
Sbjct: 56 ENKIPKHDILCAGFPCQSFSISG 78


>gi|312874669|ref|ZP_07734692.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
 gi|311089796|gb|EFQ48217.1| modification methylase HaeIII [Lactobacillus iners LEAF 2053A-b]
          Length = 331

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  ++       E   ++E +    KTY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDLGFKKA----GYEIVAANEFDKTIWKTYEKNHATRLIKGDICKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P+ D ++ G PCQ +S+AG
Sbjct: 57 DEFPECDGIIGGPPCQSWSEAG 78


>gi|284050345|ref|ZP_06380555.1| DNA (cytosine-5-)-methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 429

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          K  DLF GIGG+RL  EQ  +      +C  SSEI+  + + YQANF  T   GDI  I 
Sbjct: 5  KFIDLFAGIGGLRLGFEQAVDSFGCIPDCLLSSEIDRDARQVYQANFSETPQ-GDIKTIS 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +  +P H +LLAGFPCQ FS AG
Sbjct: 64 S--LPPHHILLAGFPCQSFSYAG 84


>gi|291569071|dbj|BAI91343.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 429

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          K  DLF GIGG+RL  EQ  +      +C  SSEI+  + + YQANF  T   GDI  I 
Sbjct: 5  KFIDLFAGIGGLRLGFEQAVDSFGCIPDCLLSSEIDRDARQVYQANFSETPQ-GDIKTIS 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +  +P H +LLAGFPCQ FS AG
Sbjct: 64 S--LPPHHILLAGFPCQSFSYAG 84


>gi|321156918|emb|CBW38908.1| putative DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        D++  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|323222462|gb|EGA06833.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
          Length = 203

 Score =  123 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|194396841|ref|YP_002037999.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
          pneumoniae G54]
 gi|194356508|gb|ACF54956.1| Tn5253 C-5 cytosine-specific DNA methylase [Streptococcus
          pneumoniae G54]
          Length = 452

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        D++  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|288906872|emb|CBJ21706.1| type II DNA modification methyltransferase [Streptococcus mitis
          B6]
          Length = 380

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    +C    EI+ ++ ++Y+   N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----KCIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|209901299|ref|YP_002290938.1| putative DNA methylase [Clostridium phage phiCD27]
 gi|199612180|gb|ACH91353.1| putative DNA methylase [Clostridium phage phiCD27]
          Length = 276

 Score =  123 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIA 57
          ML   DLF GIGG RL +E+  +    +C    E + ++  +Y A      +     DI 
Sbjct: 1  MLTFLDLFAGIGGFRLGMEKAGH----KCLGHCEYDKFANLSYNAMHKPKEDEWFERDIR 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +I+T++IP  DV   GFPCQ  S AG
Sbjct: 57 EIRTENIPRADVWCFGFPCQDISVAG 82


>gi|311064356|ref|YP_003971081.1| cytosine methyl transferase Dcm [Bifidobacterium bifidum PRL2010]
 gi|310866675|gb|ADP36044.1| Dcm Cytosine methyl transferase [Bifidobacterium bifidum PRL2010]
          Length = 326

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++  LF G GG+ L  +        +  ++++ +  +V+TY+AN  +  +  DI+++   
Sbjct: 14 RVVSLFSGAGGLDLGFKLA----GFQLAWANDFDKDAVETYRANIDDHCVCADISEVSDH 69

Query: 63 DIPDHDVLLAGFPCQPFSQA 82
          DIPD D+++ GFPCQ FS A
Sbjct: 70 DIPDCDIMIGGFPCQGFSMA 89


>gi|213650730|ref|ZP_03380783.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 405

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 20  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 75

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 76  DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 117


>gi|313678561|ref|YP_004056301.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950401|gb|ADR24996.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 315

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K+  LF G+GGI L  EQT      +  +++E +  ++ TY++NF   +   DI K+ 
Sbjct: 1  MYKVGSLFAGVGGIDLGFEQTGK---FKTIWANEFDKNALLTYKSNFSTFVSNVDIRKVN 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D++L+GFPC  FS AG
Sbjct: 58 VNDIPDVDIILSGFPCTSFSIAG 80


>gi|182684309|ref|YP_001836056.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae CGSP14]
 gi|221232093|ref|YP_002511246.1| DNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|182629643|gb|ACB90591.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae CGSP14]
 gi|220674554|emb|CAR69117.1| putative DNA methylase [Streptococcus pneumoniae ATCC 700669]
          Length = 452

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        D++  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDIICGGFPCQAFSIAG 84


>gi|48093754|gb|AAT40239.1| Eco128I DNA methylase [Escherichia coli]
          Length = 332

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN+ N         DI 
Sbjct: 15  FRFIDLFAGIGGIRKGFE----TIGGQCVFTSEWNKEAVRTYKANWFNDAQEHTFNLDIR 70

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
           ++   D                +PDHDVLLAGFPCQPFS AG
Sbjct: 71  EVTLSDKPEVPENDAYAYINEHVPDHDVLLAGFPCQPFSLAG 112


>gi|304373674|ref|YP_003858419.1| putative DNA-methyltransferase, type II restriction-modification
          system [Enterobacteria phage RB16]
 gi|299829630|gb|ADJ55423.1| putative DNA-methyltransferase, type II restriction-modification
          system [Enterobacteria phage RB16]
          Length = 302

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DL  G+GG+R   +  F    VEC  +SEI+ ++ +TY  N+ +  + GD+  I  
Sbjct: 1  MKIIDLCAGVGGVRFGFDNAFG--GVECLLTSEIDKHAQQTYIENWGDDNLQGDLFAIDE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PDHD+LLAGFPCQ FS+AG
Sbjct: 59 NKVPDHDILLAGFPCQAFSKAG 80


>gi|256819660|ref|YP_003140939.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581243|gb|ACU92378.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 318

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K  DLF G+GG R  L+    +   EC FSSE + ++ +TY+ N+     FGDI   +T+
Sbjct: 6  KFIDLFAGVGGFRYALQ----NIGAECVFSSEWDKFAQQTYKLNYGEVP-FGDITLQETK 60

Query: 63 D-IP-DHDVLLAGFPCQPFSQAG 83
          D IP + D+L AGFPCQ FS AG
Sbjct: 61 DNIPNEFDILCAGFPCQAFSIAG 83


>gi|119488852|ref|ZP_01621814.1| NgoIM [Lyngbya sp. PCC 8106]
 gi|119455013|gb|EAW36155.1| NgoIM [Lyngbya sp. PCC 8106]
          Length = 385

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +K  +LF GIGG RL ++      N+E  ++++ +  S + Y++NF  N+++  DI +I 
Sbjct: 1  MKAIELFAGIGGFRLGMKGA----NIETVWANDSSELSCRVYESNFGQNSIVLADITQID 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIP HD L AGFPCQPFS AG
Sbjct: 57 LSDIPHHDFLTAGFPCQPFSPAG 79


>gi|308185227|ref|YP_003929360.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
 gi|308061147|gb|ADO03043.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori SJM180]
          Length = 317

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGG+ L   Q       E  ++++ + ++V+TY+AN    +I GDI +I+ 
Sbjct: 1  MKIASLFSGIGGLDLGFIQ----NGFEIVWANDFDKHAVETYKANIGQNIILGDI-EIEK 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I  HD+L+ GFPCQPFS  G
Sbjct: 56 DHICGHDILIGGFPCQPFSTLG 77


>gi|303328045|ref|ZP_07358484.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
 gi|302861871|gb|EFL84806.1| modification methylase MspI [Desulfovibrio sp. 3_1_syn3]
          Length = 417

 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G+GG  L L +       +C F+SEI+      Y+ NF    + GDI K+ 
Sbjct: 6  MKTFIDLFAGLGGFHLGLSRA----GYQCVFASEIDGDLASLYERNFGLRPV-GDIRKVD 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P HDVL AGFPCQPFS AG
Sbjct: 61 VNHVPKHDVLCAGFPCQPFSSAG 83


>gi|257081612|ref|ZP_05575973.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|256989642|gb|EEU76944.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis E1Sol]
          Length = 398

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRRIGSVDVICGGFPCQAFSIAG 83


>gi|292670064|ref|ZP_06603490.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
 gi|292648252|gb|EFF66224.1| modification methylase EcoRII [Selenomonas noxia ATCC 43541]
          Length = 377

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
            +  DLF GIGGIR   +  F    +   F SE + ++ KTY+AN+ ++  I GDI KI 
Sbjct: 31  YRSIDLFAGIGGIRKGFDNAFGDA-IRTVFVSEWDEHAQKTYRANYNDSFEIAGDITKIA 89

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            ++I   D+ LAGFPCQ FS AG
Sbjct: 90  AEEIAPFDICLAGFPCQAFSMAG 112


>gi|220903552|ref|YP_002478864.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219867851|gb|ACL48186.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
          Length = 310

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L L Q  +    E  ++++ +   V TY+ N  N  + GDI KI  
Sbjct: 1  MRIVSLFSGAGGLDLGLIQAGH----EIVWANDFDKDCVATYKKNIGNHAVLGDIKKINA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
            IP  +V++ GFPCQ FSQA
Sbjct: 57 SQIPRGEVVVGGFPCQGFSQA 77


>gi|209527672|ref|ZP_03276170.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491900|gb|EDZ92257.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 429

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          K  DLF GIGG+RL  EQ         +C  SSEI+  + + YQANF  T   GDI  I 
Sbjct: 5  KFIDLFAGIGGLRLGFEQALESLGCIPDCLLSSEIDGDARQVYQANFSETPQ-GDIQTIP 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +  +P H VLLAGFPCQ FS AG
Sbjct: 64 S--LPPHHVLLAGFPCQSFSYAG 84


>gi|166367718|ref|YP_001659991.1| modification methylase [Microcystis aeruginosa NIES-843]
 gi|166090091|dbj|BAG04799.1| modification methylase [Microcystis aeruginosa NIES-843]
          Length = 159

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLFCG+GG R+ +E+    +N+E  C FS +I+  +   Y ANF +    GDI +I
Sbjct: 10 IRFIDLFCGLGGFRVAIERVCRQKNLESDCVFSCDIDKDARAIYHANFGDQPQ-GDITEI 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             DIP+HD+L+AGFPCQPFS  G
Sbjct: 69 AALDIPNHDILMAGFPCQPFSICG 92


>gi|307290179|ref|ZP_07570098.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0411]
 gi|306498807|gb|EFM68305.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0411]
          Length = 416

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|260890952|ref|ZP_05902215.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
 gi|260859505|gb|EEX74005.1| modification methylase NgoFVII [Leptotrichia hofstadii F0254]
          Length = 452

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L + +       E  ++++    +V+TY+ N  N ++ GDI  I ++
Sbjct: 10 KVISLFSGAGGMDLGIIKA----GFEVIWANDFEKDAVETYRRNIGNHIVLGDITMISSK 65

Query: 63 DIP----DHDVLLAGFPCQPFSQA 82
          +IP    + D+++ GFPCQ FS A
Sbjct: 66 EIPLKKGEVDLIIGGFPCQGFSIA 89


>gi|15088756|ref|NP_150145.1| putative DNA methylase [Streptococcus phage MM1]
 gi|15074902|emb|CAC48079.1| putative DNA methylase [Streptococcus phage MM1]
 gi|73747029|gb|AAZ82425.1| C5 methyltransferase alpha subunit [Streptococcus phage MM1 1998]
          Length = 385

 Score =  122 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG R+ +E   +    EC    EI+ ++  +Y+A       +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRIGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITTV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
              I      DV+  GFPCQ FS AG
Sbjct: 57 SDDTIRGIGHVDVICGGFPCQAFSIAG 83


>gi|160933407|ref|ZP_02080795.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
 gi|156867284|gb|EDO60656.1| hypothetical protein CLOLEP_02253 [Clostridium leptum DSM 753]
          Length = 382

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG R  L +        C    EI+ Y+ ++Y+A F         D+ + 
Sbjct: 5  ITYIDLFSGIGGFREGLSRAG---GFVCVGHCEIDKYADQSYRALFDTKGEWFREDVREA 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             ++PD D+L  GFPCQ FS AG
Sbjct: 62 DPDEMPDFDLLCGGFPCQSFSIAG 85


>gi|311279100|ref|YP_003941331.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
 gi|308748295|gb|ADO48047.1| DNA-cytosine methyltransferase [Enterobacter cloacae SCF1]
          Length = 492

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 50/102 (49%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+     +     DI 
Sbjct: 108 FRFIDLFAGIGGIRHGFEA----IGGQCVFTSEWNKHAVRTYKANWYCSPQDHQFNDDIR 163

Query: 58  KIKTQD----------------IPDHDVLLAGFPCQPFSQAG 83
            +                    IP HDVLLAGFPCQPFS AG
Sbjct: 164 SVTLSHQPNVTDGEAAEHIRGVIPQHDVLLAGFPCQPFSLAG 205


>gi|168494837|ref|ZP_02718980.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494899|ref|ZP_02719042.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494952|ref|ZP_02719095.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|168494999|ref|ZP_02719142.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575153|gb|EDT95681.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575203|gb|EDT95731.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575231|gb|EDT95759.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
 gi|183575300|gb|EDT95828.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae CDC3059-06]
          Length = 360

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    +C    EI+ ++ ++Y+   N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----KCIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|327534643|gb|AEA93477.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis OG1RF]
          Length = 334

 Score =  122 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +H    C    EI+ Y+ K+YQA       +   DI  +
Sbjct: 1  MEFLDLFAGIGGFRLGMEMAGHH----CIGFCEIDKYARKSYQAIHQTKGEIELHDITSV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q I   D+L  GFPCQ FS AG
Sbjct: 57 SNEFIQSIGHTDILCGGFPCQAFSIAG 83


>gi|315150308|gb|EFT94324.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0012]
          Length = 334

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +H    C    EI+ Y+ K+YQA       +   DI  +
Sbjct: 1  MEFLDLFAGIGGFRLGMEMAGHH----CIGFCEIDKYARKSYQAIHQTKGEIELHDITSV 56

Query: 60 KTQDIPDH---DVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SNEFIRSIGHTDILCGGFPCQAFSIAG 83


>gi|308184574|ref|YP_003928707.1| site-specific DNA methylase [Helicobacter pylori SJM180]
 gi|308060494|gb|ADO02390.1| site-specific DNA methylase [Helicobacter pylori SJM180]
          Length = 405

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           KI  LF G GG+ L           E  ++++    +V+TYQ N  + +I+GDI KI +
Sbjct: 6  YKIISLFSGCGGLDLGF----IKEGFEVIWANDFFKEAVETYQKNIGSHIIYGDITKIPS 61

Query: 62 QDIP-DHDVLLAGFPCQPFSQA 82
           DIP + DVLL GFPCQ FS A
Sbjct: 62 GDIPNECDVLLGGFPCQGFSVA 83


>gi|255972594|ref|ZP_05423180.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256762698|ref|ZP_05503278.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257422413|ref|ZP_05599403.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
 gi|255963612|gb|EET96088.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T1]
 gi|256683949|gb|EEU23644.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T3]
 gi|257164237|gb|EEU94197.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis X98]
          Length = 351

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|46191283|ref|ZP_00120453.2| COG0270: Site-specific DNA methylase [Bifidobacterium longum
          DJO10A]
          Length = 315

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 2/77 (2%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIPD 66
          F GIGGIR+ + Q          +SSE N YSV+TY+AN+ +   + GDI K+   D+PD
Sbjct: 2  FAGIGGIRMGMVQALGDA-AHVVYSSEWNKYSVQTYEANWHDENPVAGDITKVDEHDVPD 60

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+LLAGFPCQPFS AG
Sbjct: 61 IDLLLAGFPCQPFSIAG 77


>gi|312903177|ref|ZP_07762357.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
 gi|310633053|gb|EFQ16336.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
          Length = 398

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A       +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDATGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|168490143|ref|ZP_02714342.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae SP195]
 gi|183571468|gb|EDT91996.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Streptococcus
          pneumoniae SP195]
 gi|321157174|emb|CBW39159.1| Cytosine-specific DNA methyltransferase [Streptococcus phage
          11865]
          Length = 360

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    +C    EI+ ++ ++Y+   N    +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----KCIGFCEIDKFARESYKAIHNTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRGIGSVDIICGGFPCQAFSIAG 83


>gi|269122950|ref|YP_003305527.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
 gi|268314276|gb|ACZ00650.1| DNA-cytosine methyltransferase [Streptobacillus moniliformis DSM
          12112]
          Length = 328

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ L  ++       +   ++E +    +TY+ N    LI GDI  I +
Sbjct: 1  MKIISLFSGAGGLDLGFKKA----GFDIVAANEFDKTIWETYEKNHKTHLIKGDICNIHS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P+ D ++ G PCQ +S+AG
Sbjct: 57 SMFPECDGIIGGPPCQSWSEAG 78


>gi|313674544|ref|YP_004052540.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941242|gb|ADR20432.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 420

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG R+ ++    +   +C F+SE +  +  TY+ANF     FGDI K +T
Sbjct: 98  FKFIDLFAGIGGFRIAMQ----NLGGKCIFTSEWDSKAKVTYRANFGEEP-FGDITKEET 152

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IPD  D+L AGFPCQ FS AG
Sbjct: 153 KSYIPDNFDLLCAGFPCQAFSIAG 176


>gi|228969065|ref|ZP_04129983.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228790631|gb|EEM38314.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 326

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L   DLF GIGG RL +EQ  +    +C    E + ++ K+Y+   N        DI  +
Sbjct: 3  LTFIDLFAGIGGFRLGMEQAGH----KCLGYVEWDKFARKSYEAIHNTKGEWTEHDITTV 58

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 59 TNDDLRLFRGQVDVICGGFPCQAFSIAG 86


>gi|23100788|ref|NP_694255.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
          HTE831]
 gi|22779022|dbj|BAC15289.1| cytosine-specific DNA-methyltransferase [Oceanobacillus iheyensis
          HTE831]
          Length = 370

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF GIGGI +  EQ          +++E++ ++ +TY+ NF + LI  D+  IK  D
Sbjct: 5  VASLFAGIGGIDIGFEQA----GARVIWANEMDKHACETYRQNFESKLIEDDVRNIKESD 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D++ AG+PC  FS AG
Sbjct: 61 MPDADIITAGWPCVAFSIAG 80


>gi|317182001|dbj|BAJ59785.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
           pylori F57]
          Length = 434

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +++  DLF G+GG+RL  EQ  +   ++  C  SSEI   +++ Y  +F  T   GDI +
Sbjct: 28  IVRFVDLFAGLGGLRLGFEQASSSIGLKSQCILSSEIKKSALQAYTDHFKETPQ-GDITQ 86

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I T DIP+ DVLLAGFPCQPFS AG
Sbjct: 87  INTNDIPNFDVLLAGFPCQPFSNAG 111


>gi|315162212|gb|EFU06229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0645]
          Length = 398

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|291617874|ref|YP_003520616.1| EcoRIIM [Pantoea ananatis LMG 20103]
 gi|291152904|gb|ADD77488.1| EcoRIIM [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +++TY+AN    P    F  DI 
Sbjct: 89  FRFIDLFAGIGGIRRGFER----IGGKCVFTSEWNKEAIRTYRANHYSDPAEHHFNTDIR 144

Query: 58  KIK---------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                   IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPAGLTDEQAIYQSIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|16923911|gb|AAL31632.1|AF438204_2 C5 DNA methyltransferase [Positive selection vector pMTet1]
          Length = 418

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGGIR    Q+F     +C FSSEI+P++  TY  NF   + FGDI K++ 
Sbjct: 105 FKFIDLFSGIGGIR----QSFEVNGGKCVFSSEIDPFAKFTYYTNFG-VVPFGDITKVEA 159

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             IP+HD+L AGFP QP+S  G
Sbjct: 160 TTIPEHDILCAGFPGQPWSHMG 181


>gi|239627884|ref|ZP_04670915.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518030|gb|EEQ57896.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 325

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLFCGIGG R  LE         C FS + N  +  TYQ+N+ +    GDI KI+ 
Sbjct: 4  FTFIDLFCGIGGFRQALES----VGGTCVFSCDKNKNARLTYQSNYGDMPD-GDITKIEA 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP  ++L AGFPCQPFS AG
Sbjct: 59 KDIPPFNILCAGFPCQPFSIAG 80


>gi|265751236|ref|ZP_06087299.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270294601|ref|ZP_06200803.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238132|gb|EEZ23582.1| DcmB protein [Bacteroides sp. 3_1_33FAA]
 gi|270276068|gb|EFA21928.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 466

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+   F G GG+ L  EQ       E  +++E +    KTYQ N PNT +   DI K+K
Sbjct: 1  MKVASFFAGCGGLDLGFEQA----GYEVVWANEFDEAIHKTYQFNHPNTYLCKSDIRKLK 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIPD D  + G PCQ +S+ G
Sbjct: 57 GEDIPDCDGFIGGPPCQSWSEGG 79


>gi|317056067|ref|YP_004104534.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
 gi|315448336|gb|ADU21900.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
          Length = 425

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
          M+K  D+F GIGG R  LE+       EC    E + ++ + Y+A +     L F D  K
Sbjct: 1  MIKFFDIFAGIGGFRSGLEKVG---GFECVGYCECDKFAKQAYEALYDTRKELYFDDARK 57

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  +++PD D++  GFPCQ FS AG
Sbjct: 58 IDPEELPDIDLICGGFPCQSFSIAG 82


>gi|218900598|ref|YP_002449009.1| modification methylase HaeIII [Bacillus cereus G9842]
 gi|218544695|gb|ACK97089.1| modification methylase HaeIII [Bacillus cereus G9842]
          Length = 313

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++K+  LF G GG+ L   Q  +    E  +++++   + +TY+ N  N ++  D+ ++ 
Sbjct: 3  IMKVISLFSGAGGMDLGFIQAGH----EIIWANDLYEDAAETYKKNIGNHIVLKDLKEVD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
          T +IPD D+++ GFPCQ FS A
Sbjct: 59 TNNIPDGDIVIGGFPCQGFSVA 80


>gi|218699478|ref|YP_002407107.1| DNA cytosine methylase [Escherichia coli IAI39]
 gi|218369464|emb|CAR17229.1| DNA cytosine methylase [Escherichia coli IAI39]
          Length = 472

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG---- 54
            +  DLF GIGGIR   E        +C F+ E N ++V+TY+AN    P T  F     
Sbjct: 87  FRFIDLFAGIGGIRRGFES----IGGQCVFTREWNKHAVRTYKANHYCDPATHHFNEDTR 142

Query: 55  DIA-------------KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI              +   Q IP+HDVLLAGFPCQPFS AG
Sbjct: 143 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 184


>gi|327394286|dbj|BAK11708.1| modification methylase EcoRII [Pantoea ananatis AJ13355]
          Length = 459

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E+       +C F+SE N  +++TY+AN    P    F  DI 
Sbjct: 89  FRFIDLFAGIGGIRRGFER----IGGKCVFTSEWNKEAIRTYRANHYSDPAEHHFNTDIR 144

Query: 58  KIK---------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                   IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPAGLTDEQAIYQSIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|125974232|ref|YP_001038142.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
 gi|125714457|gb|ABN52949.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
          Length = 483

 Score =  121 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   D F GIGG RL LE   +    +C    E + ++VK+Y+A F         D+ K+
Sbjct: 1  MTFLDFFAGIGGFRLGLELAGH----KCIGFCEKDKFAVKSYRAMFDTEGEWYADDVTKL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K++DIP  D+   GFPCQ  S AG
Sbjct: 57 KSEDIPYADIWCFGFPCQDISVAG 80


>gi|302347057|ref|YP_003815355.1| putative modification methylase HhaI [Prevotella melaninogenica
          ATCC 25845]
 gi|302150379|gb|ADK96640.1| putative modification methylase HhaI [Prevotella melaninogenica
          ATCC 25845]
          Length = 453

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF G+GG  L L +       +C FSSE+     K YQ N+P   I GDI KI  
Sbjct: 7  LQFIDLFAGLGGFHLALSK----LGCKCVFSSELKEDLRKLYQINYPGVRIEGDITKIAP 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIP HD++ AGFPCQPFSQAG
Sbjct: 63 KDIPAHDIICAGFPCQPFSQAG 84


>gi|125974805|ref|YP_001038715.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
 gi|125715030|gb|ABN53522.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
          Length = 334

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  LF G GG+ + LE        +  ++++I+  +  TY+      ++ GDIAKI  
Sbjct: 15 YTVASLFAGAGGLDMGLELA----GFKTVWANDIDKDACATYRLWSQADVVQGDIAKIDY 70

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD DV+  GFPCQ FS AG
Sbjct: 71 SDVPDTDVITGGFPCQGFSLAG 92


>gi|259908144|ref|YP_002648500.1| DNA cytosine methylase [Erwinia pyrifoliae Ep1/96]
 gi|224963766|emb|CAX55267.1| DNA-cytosine methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283478063|emb|CAY73979.1| DNA cytosine methylase [Erwinia pyrifoliae DSM 12163]
          Length = 467

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+           DI 
Sbjct: 93  FRFIDLFAGIGGIRSGFEA----IGGQCAFTSEWNKHAVRTYKANWYCDERQHRFNQDIR 148

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            +                  Q +PDHDVLLAGFPCQPFS AG
Sbjct: 149 DVTLSGKPEITDRQAYQHIQQQVPDHDVLLAGFPCQPFSLAG 190


>gi|291530357|emb|CBK95942.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 317

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF GIGGI L  EQ       +  +++EI+  + KTYQ NFP T LI  DI K+ 
Sbjct: 1  MKLGSLFAGIGGIELGFEQ----VGFDIVWANEIDTDACKTYQFNFPKTKLIKSDIRKVN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++   D++ AGFPCQPFS  G
Sbjct: 57 FSELEKIDIITAGFPCQPFSVCG 79


>gi|332673536|gb|AEE70353.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 83]
          Length = 434

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 3/85 (3%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +++  DLF G+GG+RL  EQ  +   ++  C  SSEI   +++ Y  +F  T   GDI +
Sbjct: 28  IVRFVDLFAGLGGLRLGFEQASSSIGLKSQCILSSEIKKSALQAYIDHFKETPQ-GDITQ 86

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I T DIP+ DVLLAGFPCQPFS AG
Sbjct: 87  INTNDIPNFDVLLAGFPCQPFSNAG 111


>gi|213053466|ref|ZP_03346344.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 320

 Score =  121 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|319757724|gb|ADV69666.1| DNA-cytosine methyltransferase [Streptococcus suis JS14]
          Length = 451

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        +V+  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|116627564|ref|YP_820183.1| site-specific DNA methylase [Streptococcus thermophilus LMD-9]
 gi|116100841|gb|ABJ65987.1| Site-specific DNA methylase [Streptococcus thermophilus LMD-9]
          Length = 406

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG+ L  +           ++++    +V+TY+ N  N ++ GDI KI +
Sbjct: 4  LNLLSLFSGAGGMDLGFKNA----GFNILWANDFQKDAVETYKNNIGNHIVLGDITKIDS 59

Query: 62 QDIP--DHDVLLAGFPCQPFSQA 82
           +IP  D DV++ GFPCQ FS A
Sbjct: 60 SEIPGTDIDVVIGGFPCQGFSIA 82


>gi|27497145|gb|AAO17336.1| methylase [Neisseria lactamica]
          Length = 384

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG R+ ++    +   EC FSSE +  + +TY+ANF     FGDI  +  
Sbjct: 58  FTFIDLFAGIGGFRIAMQ----NLGGECVFSSEWDEKAKQTYEANFGEVP-FGDITLEET 112

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
            Q IP+  DVL AGFPCQ FS AG
Sbjct: 113 KQCIPEQFDVLCAGFPCQAFSIAG 136


>gi|319412045|emb|CBY91978.1| C-5-cytosine-specific DNA methylase [Streptococcus pneumoniae]
          Length = 452

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL +E   +    EC    EI+ ++ K+Y++ F     + F DI  +
Sbjct: 1  MRFIDLFSGIGGFRLGMESVRH----ECIGFCEIDKFARKSYKSFFQTEGEIEFRDIRDV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             +        DV+  GFPCQ FS AG
Sbjct: 57 SDDEFKKLRGKVDVICGGFPCQAFSIAG 84


>gi|296126993|ref|YP_003634245.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018809|gb|ADG72046.1| DNA-cytosine methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 324

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
             DLF GIGG R+ LE        +C +S+E + ++ ++Y  NF + +   DI KI  +
Sbjct: 13 TFIDLFAGIGGFRIALES----LGAKCVYSNEWDKFAKESYYKNFGD-IPDDDITKIDEK 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           IP HD+L AGFPCQ FS +G
Sbjct: 68 LIPAHDILCAGFPCQAFSISG 88


>gi|260886138|ref|ZP_05736578.2| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
 gi|260850757|gb|EEX70626.1| modification methylase EcoRII [Prevotella tannerae ATCC 51259]
          Length = 427

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF G+GG RL L++        C +SSE  P + +TY AN+     FGDI K  T
Sbjct: 105 FKFIDLFAGVGGFRLALQR----IGGRCVYSSEFEPNAQQTYLANYGEMP-FGDITKEST 159

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IPD  DVL AGFPCQPFS +G
Sbjct: 160 KSYIPDNFDVLCAGFPCQPFSISG 183


>gi|261839203|gb|ACX98968.1| DNA-cytosine methyltransferase [Helicobacter pylori 52]
          Length = 309

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG      Q       E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGGFECAFLQA----GFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|326798326|ref|YP_004316145.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
 gi|326549090|gb|ADZ77475.1| DNA-cytosine methyltransferase [Sphingobacterium sp. 21]
          Length = 409

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG RL       +   +C F+SE N  + +TY+ANF     FGDI K  T
Sbjct: 85  FTFIDLFAGIGGFRL----ACQNLGGKCVFTSEWNESAKRTYEANFAEVP-FGDITKEST 139

Query: 62  QD-IPD-HDVLLAGFPCQPFSQAG 83
           +  IP   DVL AGFPCQ FS AG
Sbjct: 140 KAFIPKQFDVLCAGFPCQAFSIAG 163


>gi|293568986|ref|ZP_06680299.1| methyl transferase [Enterococcus faecium E1071]
 gi|291588419|gb|EFF20254.1| methyl transferase [Enterococcus faecium E1071]
          Length = 380

 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A       +   DI ++
Sbjct: 1  MRFLDLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTRKEVEMHDITRV 56

Query: 60 K---TQDIPDHDVLLAGFPCQPFSQAG 83
               Q +   DVL  GFPCQ FS AG
Sbjct: 57 SDEFVQSLGPVDVLCGGFPCQAFSIAG 83


>gi|312901958|ref|ZP_07761220.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0470]
 gi|311290894|gb|EFQ69450.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0470]
          Length = 380

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|237732007|ref|ZP_04562488.1| DNA cytosine methylase [Citrobacter sp. 30_2]
 gi|226907546|gb|EEH93464.1| DNA cytosine methylase [Citrobacter sp. 30_2]
          Length = 476

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFG---DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN + + L      DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANNYCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHHDGVSDQQAAEHIRQHVPEHDVLLAGFPCQPFSLAG 188


>gi|291085206|ref|ZP_06352388.2| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291072321|gb|EFE10430.1| DNA (cytosine-5-)-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 476

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFG---DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN + + L      DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANNYCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q +P+HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHHDGVSDQQAAEHIRQHVPEHDVLLAGFPCQPFSLAG 188


>gi|327474139|gb|EGF19549.1| type II DNA modification methyltransferase Spn5252IP [Streptococcus
           sanguinis SK408]
          Length = 480

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           L+  DLF GIGG RL +E   +    EC    EI+ ++ ++Y++ F     + F DI  +
Sbjct: 29  LRFIDLFSGIGGFRLGMESVGH----ECIGFCEIDKFARESYKSIFQTEGEIEFHDIRDV 84

Query: 60  KTQDIP----DHDVLLAGFPCQPFSQAG 83
              +        D++  GFPCQ FS AG
Sbjct: 85  SDDEFKKLRGKVDIICGGFPCQAFSIAG 112


>gi|213024641|ref|ZP_03339088.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 189

 Score =  121 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|315035876|gb|EFT47808.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0027]
          Length = 298

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +   +I   DV+  GFPCQ FS AG
Sbjct: 57 SDEFIREIGSVDVICGGFPCQAFSIAG 83


>gi|22538008|ref|NP_688859.1| prophage LambdaSa2, type II DNA modification methyltransferase
          [Streptococcus agalactiae 2603V/R]
 gi|22534910|gb|AAN00732.1|AE014276_13 prophage LambdaSa2, type II DNA modification methyltransferase,
          putative [Streptococcus agalactiae 2603V/R]
          Length = 437

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +EQ  +    EC    EIN ++  +Y+        +   DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEQAGH----ECIGFCEINKFARASYKVIHDTEGEIELHDITRV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|91782477|ref|YP_557683.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
 gi|91686431|gb|ABE29631.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans LB400]
          Length = 418

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/86 (47%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            ++ DLF GIGGIR   E         C F+SE N +S KTYQ N+ +        GDI 
Sbjct: 69  FRLVDLFAGIGGIRRGFEA----HGGRCVFTSEWNDFSKKTYQENYRDCDDAHQFVGDIV 124

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 +P HDVLLAGFPCQPFS AG
Sbjct: 125 SFDVASVPSHDVLLAGFPCQPFSIAG 150


>gi|213864727|ref|ZP_03386846.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 237

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 52/102 (50%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
            I                  Q IP HDVLLAGFPCQPFS AG
Sbjct: 147 DITLSHREGVSDDEAAEHIRQHIPQHDVLLAGFPCQPFSLAG 188


>gi|304398880|ref|ZP_07380750.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
 gi|304353584|gb|EFM17961.1| DNA-cytosine methyltransferase [Pantoea sp. aB]
          Length = 458

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 51/101 (50%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN    P    F  DI 
Sbjct: 89  FRFIDLFAGIGGIRKGFEA----IGGKCVFTSEWNKEAVRTYKANHYSDPLEHHFNTDIR 144

Query: 58  KIKTQD---------------IPDHDVLLAGFPCQPFSQAG 83
           ++   +               IPDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPEGLTDDDAIYRAIDAAIPDHQVLLAGFPCQPFSLAG 185


>gi|217964683|ref|YP_002350361.1| cytosine-specific methyltransferase [Listeria monocytogenes
          HCC23]
 gi|217333953|gb|ACK39747.1| cytosine-specific methyltransferase [Listeria monocytogenes
          HCC23]
          Length = 340

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +E+  +    EC    EI+    K+YQA           DI K+
Sbjct: 1  MKFLDLFAGIGGFRLGMERAGH----ECVGYVEIDKSPRKSYQAIHDTEGEWTREDITKV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 TDEEWRTLRGTVDIICGGFPCQSFSIAG 84


>gi|5420107|emb|CAB46561.1| cytosine-specific methyltransferase [Streptococcus thermophilus]
          Length = 316

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +   F G+GGI L  E+       +  +++E + Y+  T++ NF  T+   DI  + 
Sbjct: 1  MLTVASFFAGVGGIDLGFEKA----GFKTIYANEFDNYAADTFELNFDVTVDRRDINTVP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +DIP+ DV+LAGFPCQ FS AG
Sbjct: 57 AEDIPNFDVMLAGFPCQAFSIAG 79


>gi|308061704|gb|ADO03592.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
 gi|308063214|gb|ADO05101.1| DNA-cytosine methyltransferase [Helicobacter pylori Sat464]
 gi|317180749|dbj|BAJ58535.1| DNA-cytosine methyltransferase [Helicobacter pylori F32]
          Length = 309

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG      Q       E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGGFECAFLQA----GFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|307244197|ref|ZP_07526312.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492347|gb|EFM64385.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 534

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+  LF G GG+ L  +Q       E  ++++ +  + + Y+ NF   +    I  +  +
Sbjct: 197 KLVSLFSGCGGMDLGFKQA----GYEIVYANDFDSDAQRVYEKNFG-EIDKRSILDVDEK 251

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           +IPD D+L AGFPCQPFS AG
Sbjct: 252 EIPDCDILTAGFPCQPFSNAG 272


>gi|255520393|ref|ZP_05387630.1| C-5 cytosine-specific DNA methylase [Listeria monocytogenes FSL
          J1-175]
          Length = 451

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG RL +E   +     C    EI+ Y+ K+YQA           DI K+
Sbjct: 1  MNFLDLFAGIGGFRLGMEAAGH----TCVGYVEIDKYARKSYQAIHDTEGEWTAHDITKV 56

Query: 60 KTQDIPD----HDVLLAGFPCQPFSQAG 83
             +  +     DV+  GFPCQ FS AG
Sbjct: 57 TDDEWRELRGTVDVICGGFPCQSFSIAG 84


>gi|188527161|ref|YP_001909848.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
 gi|188143401|gb|ACD47818.1| DNA-cytosine methyltransferase [Helicobacter pylori Shi470]
          Length = 309

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG      Q       E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGGFECAFLQA----GFEIDWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|322514130|ref|ZP_08067198.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
 gi|322120016|gb|EFX92002.1| modification methylase NgoPII [Actinobacillus ureae ATCC 25976]
          Length = 356

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LFCG GG+ L  E+       E   ++E +     T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFCGCGGLDLGFEKA----GFEVPVANEYDKTIWATFKANHPKTRLIEGDIRNIK 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|317008995|gb|ADU79575.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 309

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG      Q       E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGGFECAFLQA----GFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|317181696|dbj|BAJ59480.1| DNA-cytosine methyltransferase [Helicobacter pylori F57]
          Length = 309

 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGG      Q       E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MKVGSLFAGIGGFECAFLQA----GFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|127459|sp|P15446|MTH2_HAEPA RecName: Full=Modification methylase HpaII; Short=M.HpaII; AltName:
           Full=Cytosine-specific methyltransferase HpaII
 gi|43630|emb|CAA35705.1| unnamed protein product [Haemophilus parainfluenzae]
 gi|305377|gb|AAA20481.1| HpaII modification methyltransferase [Haemophilus parainfluenzae]
          Length = 358

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG R+ ++    +   +C FSSE +  + KTY+ANF + L +GDI  +  
Sbjct: 32  FTFIDLFAGIGGFRIAMQ----NLGGKCIFSSEWDEQAQKTYEANFGD-LPYGDITLEET 86

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
              IP+  D+L AGFPCQ FS AG
Sbjct: 87  KAFIPEKFDILCAGFPCQAFSIAG 110


>gi|268604583|ref|ZP_06138750.1| cytosine methylase [Neisseria gonorrhoeae PID1]
 gi|268588714|gb|EEZ53390.1| cytosine methylase [Neisseria gonorrhoeae PID1]
          Length = 341

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P + D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|1399076|gb|AAB03209.1| NgoII cytosine methylase M.NgoII [Neisseria gonorrhoeae]
          Length = 341

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P + D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|309378773|emb|CBX22599.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 342

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
              DLF GIGG R+ ++    +   EC FSSE +  + +TY+ANF     FGDI  +  
Sbjct: 16 FTFIDLFAGIGGFRIAMQ----NLGGECVFSSEWDEKAKQTYEANFGEVP-FGDITLEET 70

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           Q IP+  DVL AGFPCQ FS AG
Sbjct: 71 KQCIPEQFDVLCAGFPCQAFSIAG 94


>gi|225863800|ref|YP_002749178.1| cytosine-specific methyltransferase NlaX [Bacillus cereus
          03BB102]
 gi|225788166|gb|ACO28383.1| cytosine-specific methyltransferase NlaX [Bacillus cereus
          03BB102]
          Length = 576

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +    +C    E + ++ K+Y+   N        DI  +
Sbjct: 1  MNFIDLFAGIGGFRLGMEQAGH----KCLGYVEKDKFARKSYEAIHNTKGEWTAHDITAV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 57 TNDDLRLLRGQVDVICGGFPCQAFSIAG 84


>gi|462651|sp|P34906|MTF1_FUSNU RecName: Full=Modification methylase FnuDI; Short=M.FnuDI;
          AltName: Full=Cytosine-specific methyltransferase FnuDI
 gi|2961231|gb|AAC05695.1| FnuDI DNA modification methyltransferase [Fusobacterium
          nucleatum]
          Length = 344

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  E+       E   ++E +    +TY+ N    LI  DI +I +
Sbjct: 1  MKLLSLFSGAGGLDLGFERA----GFEIIVANEYDKTIWETYEKNHKAKLIKKDIREILS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +++P  D ++ G PCQ +S+AG
Sbjct: 57 EELPKSDGIIGGPPCQSWSEAG 78


>gi|262283394|ref|ZP_06061160.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
 gi|262260885|gb|EEY79585.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
          Length = 460

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    +C    E++ ++ K+Y+A F     +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMEAAGH----QCVGFCEVDGFARKSYKAIFNTEKEVELHDIRSV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 PDESIRGLGQVDILCGGFPCQSFSLAG 83


>gi|59802113|ref|YP_208825.1| DcmB [Neisseria gonorrhoeae FA 1090]
 gi|268593822|ref|ZP_06127989.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae 35/02]
 gi|268597735|ref|ZP_06131902.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA19]
 gi|291042825|ref|ZP_06568566.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria
          gonorrhoeae DGI2]
 gi|293398154|ref|ZP_06642359.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|44873|emb|CAA30038.1| unnamed protein product [Neisseria gonorrhoeae]
 gi|44888|emb|CAA36888.1| NgoPII restriction and modification [Neisseria gonorrhoeae]
 gi|293960|gb|AAA17019.1| cytosine methylase [Neisseria gonorrhoeae]
 gi|59719008|gb|AAW90413.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA 1090]
 gi|268547211|gb|EEZ42629.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae 35/02]
 gi|268551523|gb|EEZ46542.1| site-specific DNA-methyltransferase M. NgoPII [Neisseria
          gonorrhoeae FA19]
 gi|291013259|gb|EFE05225.1| site-specific DNA-methyltransferase M.NgoPII [Neisseria
          gonorrhoeae DGI2]
 gi|291611417|gb|EFF40487.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|227054|prf||1613419B NgoPII methylase
          Length = 341

 Score =  120 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P + D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|313668796|ref|YP_004049080.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica ST-640]
 gi|313006258|emb|CBN87720.1| C-5 cytosine-specific DNA-methylase [Neisseria lactamica 020-06]
          Length = 362

 Score =  120 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG R+ ++    +   EC FSSE +  + +TY+ANF     FGDI  +  
Sbjct: 36  FTFIDLFAGIGGFRIAMQ----NLGGECVFSSEWDEKAKQTYEANFGEVP-FGDITLEET 90

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
            Q IP+  DVL AGFPCQ FS AG
Sbjct: 91  KQCIPEQFDVLCAGFPCQAFSIAG 114


>gi|308061739|gb|ADO03627.1| DNA-cytosine methyltransferase [Helicobacter pylori Cuz20]
          Length = 704

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L    +   ++C FS+E NP+++  YQANF +     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLAL----DSLGLKCVFSAENNPHAIAMYQANFDDDSTC-DITLLN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|254282099|ref|ZP_04957067.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
 gi|219678302|gb|EED34651.1| modification methylase SsoII [gamma proteobacterium NOR51-B]
          Length = 356

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG RL LE     +     F+SE +  + + Y  N  +   FGDI K   
Sbjct: 28  FKFIDLFAGIGGFRLGLEA----QGGRSVFASEWDKTAKEYYFRNHGDYP-FGDINKFTG 82

Query: 62  QDI---------PDHDVLLAGFPCQPFSQAG 83
           + +         PDHD+L  GFPCQPFS AG
Sbjct: 83  EHLSDEQVDQLVPDHDLLAGGFPCQPFSIAG 113


>gi|169834211|ref|YP_001693507.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|168996713|gb|ACA37325.1| hypothetical protein SPH_0083 [Streptococcus pneumoniae
          Hungary19A-6]
          Length = 255

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG R+ +E   +    EC    EI+ ++  +Y+A       +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRIGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITTV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
              I      DV+  GFPCQ FS AG
Sbjct: 57 SDDTIRGIGHVDVICGGFPCQAFSIAG 83


>gi|293975|gb|AAB59071.1| cytosine methylase [Neisseria gonorrhoeae]
          Length = 341

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 12 MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 67

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P + D ++ G PCQ +S+AG
Sbjct: 68 EEDFPEEIDGIIGGPPCQSWSEAG 91


>gi|145629544|ref|ZP_01785342.1| condesin subunit E [Haemophilus influenzae 22.1-21]
 gi|144978387|gb|EDJ88151.1| condesin subunit E [Haemophilus influenzae 22.1-21]
          Length = 95

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 49/82 (59%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIRL  E        +  FSSE + Y+   Y+ NF     FGDI  I  
Sbjct: 4  YKTIDLFAGIGGIRLGFEA----FGCKNVFSSEWDKYAQSMYEVNFGEKP-FGDINDISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPDHD+LLAGFPCQPFS AG
Sbjct: 59 SDIPDHDILLAGFPCQPFSIAG 80


>gi|261400408|ref|ZP_05986533.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
 gi|269209852|gb|EEZ76307.1| modification methylase EcoRII [Neisseria lactamica ATCC 23970]
          Length = 362

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG R+ ++    +   EC FSSE +  + +TY+ANF     FGDI  +  
Sbjct: 36  FTFIDLFAGIGGFRIAMQ----NLGGECVFSSEWDEKAKQTYEANFGEVP-FGDITLEET 90

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
            Q IP+  DVL AGFPCQ FS AG
Sbjct: 91  KQCIPEQFDVLCAGFPCQAFSIAG 114


>gi|224436796|ref|ZP_03657794.1| modification methylase HaeIII [Helicobacter cinaedi CCUG 18818]
 gi|313143285|ref|ZP_07805478.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
 gi|313128316|gb|EFR45933.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
          Length = 305

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L   +       E  F+++I+  + ++YQ N  N ++  DI  ++ 
Sbjct: 4  IKVISLFSGCGGLDLGFIKA----GFEIVFANDIDKEACESYQKNIGNHIVCKDIYTLEV 59

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          ++IP+ D+L+ GFPC  F+ A
Sbjct: 60 EEIPNADILIGGFPCLGFTIA 80


>gi|20530828|gb|AAM27270.1|AF507962_1 methyl transferase [Lactococcus lactis]
          Length = 185

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+   N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQSFSIAG 84


>gi|2765225|emb|CAA73243.1| methylase [Lactococcus lactis subsp. cremoris]
          Length = 317

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLKI   F G+GGI L  E        +  +++E + Y+  T++ NF   +   DI  ++
Sbjct: 1  MLKIASFFAGVGGIDLGFENA----GFKTIYANEFDNYAADTFEMNFDVKVDRRDINDVQ 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            +IPD D++LAGFPCQ FS AG
Sbjct: 57 ADEIPDFDIMLAGFPCQAFSIAG 79


>gi|167751358|ref|ZP_02423485.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
 gi|167655604|gb|EDR99733.1| hypothetical protein EUBSIR_02344 [Eubacterium siraeum DSM 15702]
          Length = 316

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          + I  LF GIGGI L  EQ          ++++IN  + KTY+ NFPN  ++  DI  + 
Sbjct: 1  MTIGSLFAGIGGIDLGFEQA----GFRAIWANDINKNACKTYRYNFPNVNLYECDIRSLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +   DVL AGFPCQPFS  G
Sbjct: 57 PSILQPVDVLTAGFPCQPFSVCG 79


>gi|223933016|ref|ZP_03625010.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
 gi|223898333|gb|EEF64700.1| DNA-cytosine methyltransferase [Streptococcus suis 89/1591]
          Length = 451

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  +C    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMES----QGHKCLGFCEIDKFARTSYKAMFNTEGEIEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        +V+  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|10957343|ref|NP_058367.1| DNA cytosine methylase [Salmonella typhi]
 gi|7800396|gb|AAF69992.1|AF250878_153 EcoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|145849042|emb|CAM91602.1| ecoRII cytosine methylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 475

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGG+R   +        +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLRSGFDA----IGGKCVFTSEWNQFSRRTYSANWYCEDTEHHFNSDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSEDQAYASIAASIPDHDVLLAGFPCQPFSIAG 189


>gi|315611977|ref|ZP_07886895.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
 gi|315315966|gb|EFU64000.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
          Length = 359

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A       +   DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARASYKAIHDTKGEIELHDITAV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D++  GFPCQ FS AG
Sbjct: 57 SDESIRRIGRVDIICGGFPCQAFSIAG 83


>gi|293371782|ref|ZP_06618192.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CMC
          3f]
 gi|292633234|gb|EFF51805.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CMC
          3f]
          Length = 161

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +KI  LF G GG+ L  E+       +  +++E +    KTY+ N  NT++    I  I 
Sbjct: 1  MKIVSLFAGAGGLDLGFERA----GFDIVWANEYDKDIWKTYEKNHSNTILDKRSITDIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T DIP+ D ++ G PCQ +S+AG
Sbjct: 57 TTDIPECDGIIGGPPCQSWSEAG 79


>gi|325132717|gb|EGC55400.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325136737|gb|EGC59337.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325138603|gb|EGC61162.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142796|gb|EGC65168.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198710|gb|ADY94166.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325201728|gb|ADY97182.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325204572|gb|ADZ00026.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
 gi|325208528|gb|ADZ03980.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 316

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 14  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 73

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 74  DIWQ-HLDEIPTSADIIIGGFPCQDISING 102


>gi|317010127|gb|ADU80707.1| DNA-cytosine methyltransferase [Helicobacter pylori India7]
          Length = 703

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L    +   ++C FS+E NP+++  Y+ANF +     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLAL----DSLGLKCVFSAENNPHAIAMYKANFNDDSTC-DITILN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|320326214|gb|EFW82269.1| cytosine-specific DNA-methyltransferase [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 448

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L L++       EC F++E   +  + Y  NF      GDI  +  
Sbjct: 4  FRFVDLFAGLGGFHLALDR----LGGECVFAAEWKEHLREIYNVNFG-LYPAGDITSVSL 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +DIPDHDVL AGFPCQPFS+AG
Sbjct: 59 KDIPDHDVLTAGFPCQPFSKAG 80


>gi|301020988|ref|ZP_07185039.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|3660493|emb|CAA57706.1| M.EcoHK31I alpha polypeptide [Escherichia coli]
 gi|300398362|gb|EFJ81900.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 309

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K++  F GIGG  L LE+      +E  F  EIN +  K  + N+    +  DI ++  
Sbjct: 9  YKVSSFFAGIGGFDLGLEKA----GMEVVFQCEINKFCQKVLRKNWSKVPLHTDITRLNA 64

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP+ +V   GFPCQ  S A
Sbjct: 65 DEIPESNVWCGGFPCQDVSSA 85


>gi|261392162|emb|CAX49670.1| putative modification methylase (cytosine-specific
           methyltransferase) [Neisseria meningitidis 8013]
 gi|309378365|emb|CBX23011.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 389

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 87  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 146

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 147 DIWQ-HLDEIPTSADIIIGGFPCQDISING 175


>gi|269214273|ref|ZP_05986228.2| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
 gi|269210330|gb|EEZ76785.1| modification methylase NgoPII [Neisseria lactamica ATCC 23970]
          Length = 330

 Score =  119 bits (301), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           +D P+  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPEGIDGIIGGPPCQSWSEAG 80


>gi|207091758|ref|ZP_03239545.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 703

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGG RL L    +   ++C FS+E NP+++  Y+ANF +     DI  + 
Sbjct: 1  MLTYADLFAGIGGFRLAL----DSLGLKCVFSAENNPHAIAMYKANFNDDSTC-DITILN 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P+ D+L AGFPCQ FS  G
Sbjct: 56 PNTMPNFDILCAGFPCQAFSVCG 78


>gi|15901190|ref|NP_345794.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae TIGR4]
 gi|14972819|gb|AAK75434.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae TIGR4]
          Length = 407

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M+ + DLF GIGG R+ +E     +  EC    EI+ ++ K+Y++ F     + F DI  
Sbjct: 1  MIWVLDLFAGIGGFRMGMEA----QGHECLGFCEIDKFARKSYKSIFQTEGEIEFHDIRD 56

Query: 59 IKTQDIPD----HDVLLAGFPCQPFSQAG 83
          +   +        DV+  GFPCQ FS AG
Sbjct: 57 VSDDEFKKLRGKVDVICGGFPCQAFSIAG 85


>gi|308187315|ref|YP_003931446.1| DNA cytosine methylase [Pantoea vagans C9-1]
 gi|308057825|gb|ADO09997.1| DNA cytosine methylase [Pantoea vagans C9-1]
          Length = 458

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 52/101 (51%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N  +V+TY+AN    P    F  DI 
Sbjct: 89  FRFIDLFAGIGGIRKGFEA----IGGKCVFTSEWNKEAVRTYKANHYSDPLEHHFNTDIR 144

Query: 58  KI-------KTQDI--------PDHDVLLAGFPCQPFSQAG 83
           ++         ++I        PDH VLLAGFPCQPFS AG
Sbjct: 145 QVTQPEGLTDDEEIYRAIDAAVPDHQVLLAGFPCQPFSLAG 185


>gi|147668731|ref|YP_001213549.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
 gi|146269679|gb|ABQ16671.1| DNA-cytosine methyltransferase [Dehalococcoides sp. BAV1]
          Length = 335

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          ++I  LF G GG+ L  E+          +++E +     TYQ NFPNT L    I +I 
Sbjct: 1  MQIISLFSGAGGLDLGFEKA----GFNVVWANEYDKTIWDTYQHNFPNTNLDTRSITEIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + +IP  D ++ G PCQ +S+AG
Sbjct: 57 STEIPTSDGIIGGPPCQSWSEAG 79


>gi|158320884|ref|YP_001513391.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141083|gb|ABW19395.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 329

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  E+       +   ++E +    +TY+ N    LI GDI +I +
Sbjct: 1  MKLISLFSGAGGMDLGFEKA----GFKVIAANEYDKTIWETYEKNHNAPLIKGDIREIAS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           D P D D ++ G PCQ +S+AG
Sbjct: 57 GDFPDDCDGIIGGPPCQSWSEAG 79


>gi|225075681|ref|ZP_03718880.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
 gi|224952952|gb|EEG34161.1| hypothetical protein NEIFLAOT_00697 [Neisseria flavescens
           NRL30031/H210]
          Length = 389

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 87  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 146

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 147 DIWQ-HLDEIPTSADIIIGGFPCQDISING 175


>gi|309809233|ref|ZP_07703103.1| modification methylase HaeIII [Lactobacillus iners SPIN
          2503V10-D]
 gi|308170467|gb|EFO72490.1| modification methylase HaeIII [Lactobacillus iners SPIN
          2503V10-D]
          Length = 340

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  ++       E   ++E +    KTY+ N    LI GDI KI +
Sbjct: 1  MKLISLFSGAGGLDLGFKKA----GYEIVVANEFDKTIWKTYEKNNATKLIKGDICKIPS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+AG
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEAG 78


>gi|30089875|ref|NP_839905.1| putative methylase [Lactococcus phage P335 sensu lato]
 gi|21954664|gb|AAM83053.1|AF489521_14 putative methylase [Lactococcus phage 4268]
          Length = 185

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LEQ  +    EC    EI+ ++ ++Y+   N      + DI  +
Sbjct: 1  MKFLDLFAGIGGFRLGLEQAGH----ECVGFCEIDKFARQSYKAIHNTEGEREYHDITTV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            ++        +++  GFPCQ FS AG
Sbjct: 57 SNEEWRTLRGTVELICGGFPCQAFSIAG 84


>gi|194099965|ref|YP_002003104.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|239997973|ref|ZP_04717897.1| Modification methylase NgoPII [Neisseria gonorrhoeae 35/02]
 gi|240015049|ref|ZP_04721962.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI18]
 gi|240017498|ref|ZP_04724038.1| Modification methylase NgoPII [Neisseria gonorrhoeae FA6140]
 gi|240122118|ref|ZP_04735080.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID24-1]
 gi|240124411|ref|ZP_04737367.1| Modification methylase NgoPII [Neisseria gonorrhoeae PID332]
 gi|240124717|ref|ZP_04737603.1| Modification methylase NgoPII [Neisseria gonorrhoeae SK-92-679]
 gi|254494673|ref|ZP_05107844.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|260439589|ref|ZP_05793405.1| Modification methylase NgoPII [Neisseria gonorrhoeae DGI2]
 gi|268599983|ref|ZP_06134150.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          MS11]
 gi|268602320|ref|ZP_06136487.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID18]
 gi|268683040|ref|ZP_06149902.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID332]
 gi|268683292|ref|ZP_06150154.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-92-679]
 gi|268687469|ref|ZP_06154331.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-93-1035]
 gi|462655|sp|P08455|MTP2_NEIGO RecName: Full=Modification methylase NgoPII; Short=M.NgoPII;
          AltName: Full=Cytosine-specific methyltransferase
          NgoPII
 gi|193935255|gb|ACF31079.1| Modification methylase NgoPII [Neisseria gonorrhoeae NCCP11945]
 gi|226513713|gb|EEH63058.1| modification methylase HaeIII [Neisseria gonorrhoeae 1291]
 gi|268584114|gb|EEZ48790.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          MS11]
 gi|268586451|gb|EEZ51127.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID18]
 gi|268623324|gb|EEZ55724.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          PID332]
 gi|268623576|gb|EEZ55976.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-92-679]
 gi|268627753|gb|EEZ60153.1| HaeIII DNA modification methyltransferase [Neisseria gonorrhoeae
          SK-93-1035]
 gi|317165417|gb|ADV08958.1| DcmB [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 330

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P + D ++ G PCQ +S+AG
Sbjct: 57 EEDFPEEIDGIIGGPPCQSWSEAG 80


>gi|306833678|ref|ZP_07466805.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
          700338]
 gi|304424448|gb|EFM27587.1| DNA (cytosine-5-)-methyltransferase [Streptococcus bovis ATCC
          700338]
          Length = 451

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL +E     +  EC    EI+ ++  +Y+A F     + + DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGMEA----QGHECLGFCEIDKFARTSYKAIFNTEGEMEYHDIKEV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
             D        +V+  GFPCQ FS AG
Sbjct: 57 TDHDFRQFRGQVEVICGGFPCQAFSLAG 84


>gi|269978372|gb|ACZ55920.1| putative type I restriction-modification system specificity
          subunit S [Helicobacter pylori]
          Length = 263

 Score =  119 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           KI  LF G GG+ L           E  ++++    +V+TYQ N  + +++GDI KI +
Sbjct: 10 YKIISLFSGCGGLDLGF----IKEGFEVIWANDFFKEAVETYQKNIGSHIVYGDITKIPS 65

Query: 62 QDIP-DHDVLLAGFPCQPFSQA 82
           DIP + DVLL GFPCQ FS A
Sbjct: 66 GDIPNECDVLLGGFPCQGFSVA 87


>gi|225076231|ref|ZP_03719430.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
          NRL30031/H210]
 gi|224952355|gb|EEG33564.1| hypothetical protein NEIFLAOT_01268 [Neisseria flavescens
          NRL30031/H210]
          Length = 374

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 RILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|315222617|ref|ZP_07864506.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
 gi|315188303|gb|EFU22029.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
          Length = 348

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  E+           ++E +    +TY+ N    LI GDI  I +
Sbjct: 9  MNLISLFSGAGGLDLGFEKA----GFNVVAANEYDKTIWETYEKNHDTKLIKGDICGIPS 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +  P  D ++ G PCQ +S+AG
Sbjct: 65 EMFPKCDGIIGGPPCQSWSEAG 86


>gi|325130663|gb|EGC53404.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325134723|gb|EGC57362.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325144843|gb|EGC67131.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325205668|gb|ADZ01121.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 316

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 14  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 73

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 74  DIWQY-LDEIPTSADIIIGGFPCQDISING 102


>gi|256958119|ref|ZP_05562290.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
 gi|256948615|gb|EEU65247.1| C5 methyltransferase alpha subunit [Enterococcus faecalis DS5]
          Length = 298

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    EI+ ++  +Y+A    T  +   DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMESAGH----ECIGFCEIDKFARTSYKAIHDTTGEVEMHDITTI 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      DV+  GFPCQ FS AG
Sbjct: 57 SDEFIRGIGSVDVICGGFPCQAFSIAG 83


>gi|325130344|gb|EGC53110.1| modification methylase EcoRII [Neisseria meningitidis OX99.30304]
          Length = 337

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
              DLF GIGG R+ +E    +    C FSSE +  + +TYQ NF N + +GDI  K  
Sbjct: 20 FTFIDLFAGIGGFRIAME----NVGGRCVFSSEWDDKARQTYQVNF-NDIPYGDITLKET 74

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
             IP   DVL AGFPCQPFS AG
Sbjct: 75 KAAIPSKFDVLTAGFPCQPFSIAG 98


>gi|319638577|ref|ZP_07993339.1| modification methylase NgoFVII [Neisseria mucosa C102]
 gi|317400326|gb|EFV80985.1| modification methylase NgoFVII [Neisseria mucosa C102]
          Length = 374

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 RILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|304387412|ref|ZP_07369603.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
 gi|304338505|gb|EFM04624.1| modification methylase EcoRII [Neisseria meningitidis ATCC 13091]
          Length = 336

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
              DLF GIGG R+ +E    +    C FSSE +  + +TYQ NF N + +GDI  K  
Sbjct: 20 FTFIDLFAGIGGFRIAME----NVGGRCVFSSEWDDKARQTYQVNF-NDIPYGDITLKET 74

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
             IP   DVL AGFPCQPFS AG
Sbjct: 75 KAAIPSKFDVLTAGFPCQPFSIAG 98


>gi|254805366|ref|YP_003083587.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|254668908|emb|CBA07091.1| putative type II DNA modification methylase [Neisseria meningitidis
           alpha14]
 gi|308389730|gb|ADO32050.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
          Length = 389

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 87  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 146

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 147 DIWQY-LDEIPTSADIIIGGFPCQDISING 175


>gi|15677157|ref|NP_274310.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|161870164|ref|YP_001599334.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          053442]
 gi|218768314|ref|YP_002342826.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|7226530|gb|AAF41666.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis MC58]
 gi|121052322|emb|CAM08652.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|161595717|gb|ABX73377.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          053442]
 gi|254670478|emb|CBA06174.1| putative DNA modification methylase [Neisseria meningitidis
          alpha153]
 gi|308389411|gb|ADO31731.1| C-5 cytosine-specific DNA-methylase [Neisseria meningitidis
          alpha710]
 gi|316984080|gb|EFV63058.1| modification methylase SsoII [Neisseria meningitidis H44/76]
 gi|319410559|emb|CBY90927.1| putative type II restriction-modification system enzyme Mod
          [Neisseria meningitidis WUE 2594]
 gi|325134466|gb|EGC57111.1| modification methylase EcoRII [Neisseria meningitidis M13399]
 gi|325136204|gb|EGC58812.1| modification methylase EcoRII [Neisseria meningitidis M0579]
 gi|325140483|gb|EGC63004.1| modification methylase EcoRII [Neisseria meningitidis CU385]
 gi|325144567|gb|EGC66866.1| modification methylase EcoRII [Neisseria meningitidis M01-240013]
 gi|325200082|gb|ADY95537.1| modification methylase EcoRII [Neisseria meningitidis H44/76]
 gi|325201996|gb|ADY97450.1| modification methylase EcoRII [Neisseria meningitidis M01-240149]
 gi|325205934|gb|ADZ01387.1| modification methylase EcoRII [Neisseria meningitidis M04-240196]
 gi|325208252|gb|ADZ03704.1| modification methylase EcoRII [Neisseria meningitidis NZ-05/33]
          Length = 337

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
              DLF GIGG R+ +E    +    C FSSE +  + +TYQ NF N + +GDI  K  
Sbjct: 20 FTFIDLFAGIGGFRIAME----NVGGRCVFSSEWDDKARQTYQVNF-NDIPYGDITLKET 74

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
             IP   DVL AGFPCQPFS AG
Sbjct: 75 KAAIPSKFDVLTAGFPCQPFSIAG 98


>gi|121635255|ref|YP_975500.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313668027|ref|YP_004048311.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica ST-640]
 gi|120866961|emb|CAM10721.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis FAM18]
 gi|313005489|emb|CBN86924.1| C-5 cytosine-specific DNA methylase [Neisseria lactamica 020-06]
          Length = 383

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            KI  LF G GG+ L     F   N        +  +++EI+ ++V+TY+ N  N ++ G
Sbjct: 81  YKIISLFSGCGGMDLGFLGGFEFLNRTYDKHDFDIIWANEIDEHAVRTYRHNLGNHIVHG 140

Query: 55  DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           DI +    +IP   D+++ GFPCQ  S  G
Sbjct: 141 DIWQ-HLDEIPTSADIIIGGFPCQDISING 169


>gi|317048624|ref|YP_004116272.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
 gi|316950241|gb|ADU69716.1| DNA-cytosine methyltransferase [Pantoea sp. At-9b]
          Length = 467

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 52/101 (51%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   EQ       +C F+SE N  +V+TY+AN    P    F  DI 
Sbjct: 93  FQFVDLFAGIGGIRRGFEQ----IGGQCVFTSEWNKEAVRTYKANHYCDPQQHRFNSDIR 148

Query: 58  KIK---------------TQDIPDHDVLLAGFPCQPFSQAG 83
           ++                 + IPDH VLLAGFPCQPFS AG
Sbjct: 149 QVTQPAGLHDEQAIYQHIDRTIPDHQVLLAGFPCQPFSLAG 189


>gi|329298618|ref|ZP_08255954.1| DNA cytosine methylase [Plautia stali symbiont]
          Length = 465

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/101 (44%), Positives = 51/101 (50%), Gaps = 23/101 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   EQ       +C F+SE N  +V+TY+AN    P    F  DI 
Sbjct: 91  FQFIDLFAGIGGIRRGFEQ----IGGQCVFTSEWNKEAVRTYKANHYSDPAQHQFNSDIR 146

Query: 58  KIK---------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                 Q IPDH VLLAGFPCQPFS AG
Sbjct: 147 LITQPAGLPDEQAIYQHIDQTIPDHQVLLAGFPCQPFSLAG 187


>gi|229187780|ref|ZP_04314910.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228595683|gb|EEK53373.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 365

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L   DLF GIGG RL +E   +    +C    EI+ ++ K+Y+   N        DI  +
Sbjct: 3  LTFIDLFAGIGGFRLGMEAAGH----KCLGYVEIDKFARKSYEAIHNTKGEWTAHDITTV 58

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
             D+       DV+  GFPCQ FS AG
Sbjct: 59 TNDDLRLLRGTVDVICGGFPCQAFSIAG 86


>gi|67922277|ref|ZP_00515790.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67855853|gb|EAM51099.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 226

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 8/89 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE-------CFFSSEINPYSVKTYQANFPNTLIFG 54
           LK  DLFCGIGG R+ LE   +H   +       C FSS+I+  + K Y+ANF +    G
Sbjct: 16  LKYIDLFCGIGGFRIALELVCSHYKFKEHKIKPICVFSSDIDADAQKNYEANFKDKPQ-G 74

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI +I  + IP+H++LLAGFPCQ FS  G
Sbjct: 75  DITQIPVELIPNHNLLLAGFPCQTFSICG 103


>gi|312873586|ref|ZP_07733633.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
 gi|311090839|gb|EFQ49236.1| modification methylase BanI [Lactobacillus iners LEAF 2052A-d]
          Length = 487

 Score =  119 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           +   DLF G+GGIRL  E+         +C FSS+I   ++  Y+ NF       DI KI
Sbjct: 70  ITYIDLFSGLGGIRLGFEEALTDYGLTGKCVFSSDIKESAITAYKTNFGENPKC-DITKI 128

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              ++P+ D LLAGFPCQ FSQAG
Sbjct: 129 NPTNLPNFDFLLAGFPCQAFSQAG 152


>gi|167854713|ref|ZP_02477492.1| cell division protein MukB [Haemophilus parasuis 29755]
 gi|167854127|gb|EDS25362.1| cell division protein MukB [Haemophilus parasuis 29755]
          Length = 361

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG RL +E+   +    C FSSEI+  + KTY  NF     +GDI  +  
Sbjct: 37  FTFIDLFAGIGGFRLAMEKLGGY----CVFSSEIDENAQKTYATNFGEKP-YGDITLEET 91

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
            + IP   D+L AGFPCQ FS AG
Sbjct: 92  KRLIPTTFDILCAGFPCQAFSIAG 115


>gi|169829195|ref|YP_001699353.1| modification methylase SPRI [Lysinibacillus sphaericus C3-41]
 gi|168993683|gb|ACA41223.1| Modification methylase SPRI [Lysinibacillus sphaericus C3-41]
          Length = 418

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          ++  D F GIGG RL +EQ  +     C    E + ++ K+Y+   N        DI  +
Sbjct: 1  MQFLDFFAGIGGFRLGMEQAGH----TCAGYVEWDKFARKSYEAIHNTEGEWTAHDITTV 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            ++        D++  GFPCQ FS AG
Sbjct: 57 SDEEFSKFRGTVDIICGGFPCQAFSVAG 84


>gi|197302809|ref|ZP_03167861.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
          29176]
 gi|197298046|gb|EDY32594.1| hypothetical protein RUMLAC_01538 [Ruminococcus lactaris ATCC
          29176]
          Length = 333

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
            DLF G+GG R+ LE        +C +S+E N    K Y  NF + +  GDI ++    
Sbjct: 14 FIDLFAGLGGFRIALES----LGAKCVYSNEWNVPVQKVYADNFGD-IPEGDITQVDENT 68

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          IPDHD+L AGFPCQ FS +G
Sbjct: 69 IPDHDILCAGFPCQAFSISG 88


>gi|294787738|ref|ZP_06752982.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
 gi|294484031|gb|EFG31714.1| modification methylase NgoPII [Simonsiella muelleri ATCC 29453]
          Length = 331

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     TY+AN P T LI GDI  I+
Sbjct: 1  MKVISLFSGCGGLDLGFERA----GFEIPVANEYDKTIWATYKANHPKTQLIEGDIRHIQ 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
            + PD  D ++ G PCQ +S+AG
Sbjct: 57 EINFPDEIDGIIGGPPCQSWSEAG 80


>gi|154504826|ref|ZP_02041564.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC
          29149]
 gi|153794709|gb|EDN77129.1| hypothetical protein RUMGNA_02336 [Ruminococcus gnavus ATCC
          29149]
          Length = 422

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DL  GIGG RL LE   +    +C    E + ++  +Y+A +         D+ K+
Sbjct: 4  MTFLDLCSGIGGFRLGLETAGH----KCIGYCEYDKFARASYEAMYDTEGEWKAHDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K +D+P  D+   GFPCQ  S AG
Sbjct: 60 KPEDVPYADIWCFGFPCQDISVAG 83


>gi|168335325|ref|ZP_02693422.1| DNA-cytosine methyltransferase [Epulopiscium sp. 'N.t. morphotype
          B']
          Length = 324

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF G GG+ L  E+       E   ++E +     TY+ N    LI GDI+KI +
Sbjct: 1  MRLISLFAGAGGLDLGFEKA----GYEIAAANEYDKTIWATYEKNHKGPLIKGDISKIPS 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
           D PD  D ++ G PCQ +S AG
Sbjct: 57 ADFPDGIDGIIGGPPCQSWSAAG 79


>gi|160947479|ref|ZP_02094646.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
 gi|158446613|gb|EDP23608.1| hypothetical protein PEPMIC_01413 [Parvimonas micra ATCC 33270]
          Length = 348

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  E+           ++E +    +TY+ N    LI GDI  I +
Sbjct: 9  MNLVSLFSGAGGLDLGFERA----GFNIVVANEYDKTIWETYEKNHKTKLIKGDICGIPS 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P  D ++ G PCQ +S+AG
Sbjct: 65 DMFPKCDGIIGGPPCQSWSEAG 86


>gi|257882475|ref|ZP_05662128.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|294620467|ref|ZP_06699776.1| methyl transferase [Enterococcus faecium E1679]
 gi|294623872|ref|ZP_06702700.1| methyl transferase [Enterococcus faecium U0317]
 gi|257818133|gb|EEV45461.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|291593380|gb|EFF24945.1| methyl transferase [Enterococcus faecium E1679]
 gi|291596826|gb|EFF28049.1| methyl transferase [Enterococcus faecium U0317]
          Length = 380

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTRKEVEMHDITSV 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    +   D+L  GFPCQ FS AG
Sbjct: 57 SDEFVRSLGPVDILCGGFPCQAFSIAG 83


>gi|261379604|ref|ZP_05984177.1| modification methylase EcoRII [Neisseria subflava NJ9703]
 gi|284798084|gb|EFC53431.1| modification methylase EcoRII [Neisseria subflava NJ9703]
          Length = 320

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGG    L++       +C F+SE +  + KTY+ N  N    GDI K + 
Sbjct: 6  FTFIDLFAGIGGFHFALKELRG----KCVFASEWDKNAQKTYEVNH-NLKPLGDITKQEI 60

Query: 62 QD-IPD-HDVLLAGFPCQPFSQAG 83
          +D IP+  D+L AGFPCQ FS AG
Sbjct: 61 KDQIPEKFDILCAGFPCQAFSIAG 84


>gi|238793797|ref|ZP_04637418.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726861|gb|EEQ18394.1| Cytosine-specific methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 365

 Score =  118 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+  LF G GG+ L     F+  N        E  +++E NP +VKTY+ NF + ++ G
Sbjct: 60  YKLISLFSGCGGMDLGFCGNFSFLNKEYKKTKFEIIWANEFNPNAVKTYKKNFSHNIVEG 119

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++      + DVL+ GFPCQ  S  G
Sbjct: 120 DIWELIDSVPTECDVLIGGFPCQDISING 148


>gi|293371777|ref|ZP_06618187.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292633229|gb|EFF51800.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 459

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+   F G GG+ L  EQ       E  +++E +    +TYQ N PNT +   DI  +K
Sbjct: 1  MKVASFFAGCGGLDLGFEQA----GYEVIWANEFDEGIHETYQFNHPNTYLCKSDIRTLK 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D  + G PCQ +S+ G
Sbjct: 57 AADIPDCDGFIGGPPCQSWSEGG 79


>gi|332162719|ref|YP_004299296.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666949|gb|ADZ43593.1| Cytosine-specific methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859459|emb|CBX69803.1| hypothetical protein YEW_FM23370 [Yersinia enterocolitica W22703]
          Length = 365

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDL-------EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+  LF G GG+ L          + +     E  +++E NP +VKTY+ NF + ++ G
Sbjct: 60  YKLISLFSGCGGMDLGFCGDFSVLNKKYKKTKFEIIWANEFNPNAVKTYKKNFSHNIVEG 119

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++      + DVL+ GFPCQ  S  G
Sbjct: 120 DIWELIDSVPTECDVLIGGFPCQDISING 148


>gi|294673665|ref|YP_003574281.1| prophage PRU01 DNA methylase, C-5 cytosine-specific family
          [Prevotella ruminicola 23]
 gi|294471747|gb|ADE81136.1| prophage PRU01, DNA methylase, C-5 cytosine-specific family
          [Prevotella ruminicola 23]
          Length = 330

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +P   +T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFERA----GFEVPVANEFDPSIWETFEANHPKTKLIRGDIRNIK 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D P D D ++ G PCQ +S+AG
Sbjct: 57 ESDFPKDVDGIIGGPPCQSWSEAG 80


>gi|325298663|ref|YP_004258580.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318216|gb|ADY36107.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 463

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+   F G GG+ L  EQ      +E  ++++I     +TYQ N PNT++   DI ++ 
Sbjct: 1  MKVASFFSGCGGLDLGFEQA----GIEVIWANDIEASIHETYQYNHPNTILCKSDIRELH 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD D  + G PCQ +S+ G
Sbjct: 57 ASDIPDCDGFIGGPPCQSWSEGG 79


>gi|302873674|ref|YP_003842307.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686602|ref|ZP_07629048.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576531|gb|ADL50543.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 448

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   D   GIGG RL LE T +    +C    E + ++VK+Y+A F         DI ++
Sbjct: 4  MTFLDFCAGIGGFRLGLELTGH----KCIGFCEKDKFAVKSYKAMFETEGEWYANDITEL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K+ +IP  D+   GFPCQ  S AG
Sbjct: 60 KSDEIPYADIWCFGFPCQDISVAG 83


>gi|220903553|ref|YP_002478865.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219867852|gb|ACL48187.1| DNA-cytosine methyltransferase [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
          Length = 308

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG+ L  +   +       +++++   +VKTY+ N  + ++  DI+++ T
Sbjct: 1  MKVVSLFSGAGGLDLGFKMAGHS----IIWANDVYEDAVKTYRMNIGDHILCKDISQVTT 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           ++PD D+++ GFPCQ FS A
Sbjct: 57 AEVPDSDIIIGGFPCQGFSVA 77


>gi|331085742|ref|ZP_08334825.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406665|gb|EGG86170.1| hypothetical protein HMPREF0987_01128 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 425

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   DL  GIGG RL LE   +    +C    E + ++  +Y+A +         D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLESAGH----KCVGYCEYDKFARASYEAMYDTEGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D+P  D+   GFPCQ  S AG
Sbjct: 60 KPSDVPRADIWCFGFPCQDISVAG 83


>gi|328947436|ref|YP_004364773.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447760|gb|AEB13476.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 439

 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG RL ++        +C FSSE +  + +TY  N+     FGDI K + 
Sbjct: 96  FTFIDLFAGIGGFRLAMQSC----GGQCVFSSEWDDAAKQTYFENYGEVP-FGDITKTEI 150

Query: 62  QD-IP-DHDVLLAGFPCQPFSQAG 83
           +D IP   DVL AGFPCQPFS +G
Sbjct: 151 KDLIPKKFDVLCAGFPCQPFSYSG 174


>gi|18466581|ref|NP_569389.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|160431784|ref|YP_001551898.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|16505897|emb|CAD09776.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|159885325|dbj|BAF92929.1| putative DNA modification methylase [Salmonella enterica subsp.
           enterica serovar Choleraesuis]
          Length = 475

 Score =  117 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGG+R   +        +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLRSGFDA----IGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|225076313|ref|ZP_03719512.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
 gi|224952437|gb|EEG33646.1| hypothetical protein NEIFLAOT_01354 [Neisseria flavescens
           NRL30031/H210]
          Length = 359

 Score =  117 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG R+ ++        +C FSSE +  + +TY ANF   + FGDI   +T
Sbjct: 37  FTFIDLFAGIGGFRIAMQS----LGGKCLFSSEWDDKAQQTYAANFG-EIPFGDITTEET 91

Query: 62  Q-DIP-DHDVLLAGFPCQPFSQAG 83
           +  IP + D+L AGFPCQ FS AG
Sbjct: 92  KSHIPKEFDILCAGFPCQAFSIAG 115


>gi|260752101|ref|YP_003237616.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
 gi|257767571|dbj|BAI39065.1| putative DNA modification methylase [Escherichia coli O111:H- str.
           11128]
          Length = 475

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGG+R   +        +C F+SE N +S +TY AN+           DI 
Sbjct: 92  FRFIDLFAGIGGLRSGFDA----IGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|160931938|ref|ZP_02079330.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
 gi|156868980|gb|EDO62352.1| hypothetical protein CLOLEP_00771 [Clostridium leptum DSM 753]
          Length = 379

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          ++  DLF GIGG R  L Q        C    EI+ ++ ++Y+A F         DI K 
Sbjct: 6  IRYLDLFSGIGGFREGLTQAG---GFTCAGHCEIDQHADRSYRALFDTEGEWFCDDIRKA 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +++PD ++L  GFPCQ FS AG
Sbjct: 63 DPEELPDVELLCGGFPCQAFSIAG 86


>gi|218133430|ref|ZP_03462234.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990805|gb|EEC56811.1| hypothetical protein BACPEC_01295 [Bacteroides pectinophilus ATCC
          43243]
          Length = 320

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DL  GIGG RL LE   +    +C    E + ++  +Y+A +         D+ K+
Sbjct: 4  MTFLDLCSGIGGFRLGLETAGH----KCIGYCEYDKFARASYEAMYDTEGEWKAHDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K +D+P  D+   GFPCQ  S AG
Sbjct: 60 KPEDVPYADIWCFGFPCQDISVAG 83


>gi|161869727|ref|YP_001598894.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          meningitidis 053442]
 gi|161595280|gb|ABX72940.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          meningitidis 053442]
          Length = 374

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQIDPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          +  IPD D++L GFPCQ FS 
Sbjct: 73 NPTIPDCDIILGGFPCQDFSM 93


>gi|306824635|ref|ZP_07457980.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433203|gb|EFM36174.1| DNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 410

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 13 YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 69

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +DIP    D+++ GFPCQ FS AG
Sbjct: 70 PEDIPVERVDIIMGGFPCQAFSIAG 94


>gi|170718749|ref|YP_001783936.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168826878|gb|ACA32249.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 372

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 16 KILSLFSGCGGLDLGFHQA----GYETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 71

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 72 DPTIPDCDIILGGFPCQDFSM 92


>gi|240117500|ref|ZP_04731562.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID1]
 gi|268603200|ref|ZP_06137367.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
 gi|268587331|gb|EEZ52007.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID1]
          Length = 374

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|169823657|ref|YP_001691160.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832277|dbj|BAG09192.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 332

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K+  LF G+GGI +  E+       E  +++EI+  + +TY+ NFP   +   DI  ++ 
Sbjct: 4  KVISLFAGVGGIDIGFEKA----GFETIYANEIDEKARQTYKLNFPEVFLDSRDIRDVQK 59

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           DIP +  V+++GFPCQ FS AG
Sbjct: 60 DDIPHEASVVVSGFPCQSFSIAG 82


>gi|59800809|ref|YP_207521.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA 1090]
 gi|254493277|ref|ZP_05106448.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|260440968|ref|ZP_05794784.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|268594414|ref|ZP_06128581.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|268596411|ref|ZP_06130578.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|268598542|ref|ZP_06132709.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268600894|ref|ZP_06135061.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268681681|ref|ZP_06148543.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268683908|ref|ZP_06150770.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291044296|ref|ZP_06570005.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|293399487|ref|ZP_06643640.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717704|gb|AAW89109.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA 1090]
 gi|226512317|gb|EEH61662.1| modification methylase NgoFVII [Neisseria gonorrhoeae 1291]
 gi|268547803|gb|EEZ43221.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|268550199|gb|EEZ45218.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|268582673|gb|EEZ47349.1| modification methylase NgoFVII [Neisseria gonorrhoeae MS11]
 gi|268585025|gb|EEZ49701.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID18]
 gi|268621965|gb|EEZ54365.1| modification methylase NgoFVII [Neisseria gonorrhoeae PID332]
 gi|268624192|gb|EEZ56592.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-92-679]
 gi|291011190|gb|EFE03186.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI2]
 gi|291610056|gb|EFF39178.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 374

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|313651376|gb|EFS15772.1| modification methylase EcoRII [Shigella flexneri 2a str. 2457T]
          Length = 463

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
            +  DLF GIGG+R   +        +C F+SE N +S +TY AN+           DI 
Sbjct: 80  FRFIDLFAGIGGLRSGFDA----IGGKCVFTSEWNQFSRRTYSANWYCDETEHYFNSDIR 135

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 136 DITLSNLPDVSDDQAYASIDASIPDHDVLLAGFPCQPFSIAG 177


>gi|268686152|ref|ZP_06153014.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
 gi|268626436|gb|EEZ58836.1| modification methylase NgoFVII [Neisseria gonorrhoeae SK-93-1035]
          Length = 374

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|11386930|sp|Q59606|MTF7_NEIGO RecName: Full=Modification methylase NgoFVII; Short=M.NgoFVII;
          AltName: Full=Cytosine-specific methyltransferase
          NgoFVII; Short=M.NgoVII
 gi|1165245|gb|AAA86270.1| M.NgoVII [Neisseria gonorrhoeae]
          Length = 374

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|282859944|ref|ZP_06269032.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587347|gb|EFB92564.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 448

 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF GIGG R+ ++    +    C FSSE +  + KTY  N+     FGDI + +T
Sbjct: 114 FTFIDLFAGIGGFRMAMQ----NLGGRCVFSSEWDIQAQKTYFLNYGEVP-FGDITQERT 168

Query: 62  QD-IPDH-DVLLAGFPCQPFSQAG 83
           +  IPDH D+L AGFPCQ FS AG
Sbjct: 169 KAYIPDHFDILCAGFPCQAFSLAG 192


>gi|317480905|ref|ZP_07939986.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902990|gb|EFV24863.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
          Length = 441

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG  L LE+       EC F+SEI       Y+ N    +  GDI ++  
Sbjct: 4  LKFIDLFAGLGGFHLALEK----LGCECVFASEIQTELRTLYERNHG-IICHGDINEVDI 58

Query: 62 Q-DIPDHDVLLAGFPCQPFSQAG 83
          + DIP+HD+L  GFPCQPFSQAG
Sbjct: 59 EKDIPEHDILCGGFPCQPFSQAG 81


>gi|322392562|ref|ZP_08066022.1| DNA methylase [Streptococcus peroris ATCC 700780]
 gi|321144554|gb|EFX39955.1| DNA methylase [Streptococcus peroris ATCC 700780]
          Length = 406

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 13 YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 69

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +DIP    DV++ GFPCQ FS AG
Sbjct: 70 PEDIPAERVDVIMGGFPCQAFSIAG 94


>gi|153939897|ref|YP_001391385.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          Langeland]
 gi|152935793|gb|ABS41291.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          Langeland]
 gi|295319412|gb|ADF99789.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum F str.
          230613]
          Length = 547

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF G GG+ L  E T      E     E N  + KTY  N  N   + DI K+ 
Sbjct: 1  MYKIVDLFAGAGGLSLGFEMT---EKFEIVAFVENNKNAAKTYLKNHSNIKNYEDILKLD 57

Query: 61 TQDI----PDHDVLLAGFPCQPFSQA 82
            DI    P+ DV++ G PCQ FS A
Sbjct: 58 FNDILSSNPNIDVVIGGPPCQGFSNA 83


>gi|119511452|ref|ZP_01630563.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
 gi|119463917|gb|EAW44843.1| modification methylase NlaIV [Nodularia spumigena CCY9414]
          Length = 433

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ++  DLF GIGGIRL  EQ  N  N+  EC  SSEIN  +   Y+ NF N    GD+  I
Sbjct: 4  IRFVDLFSGIGGIRLAFEQAANSLNIESECVLSSEINTDAQFVYETNF-NHKSLGDVRLI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +P+H+VLLAGFPCQ FS AG
Sbjct: 63 --EKLPEHEVLLAGFPCQSFSHAG 84


>gi|256819720|ref|YP_003140999.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
 gi|256581303|gb|ACU92438.1| DNA-cytosine methyltransferase [Capnocytophaga ochracea DSM 7271]
          Length = 389

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLF GIGG  L  ++   H      + SEI+ +++  Y+ NFPN    GDI  +  
Sbjct: 1  MKLIDLFSGIGGFSLGFQRAGYHFTEH--YFSEIDKHAIANYKNNFPNAKYIGDITTLHG 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D++  G PCQ FS AG
Sbjct: 59 GDFTGIDIITFGSPCQDFSLAG 80


>gi|332362221|gb|EGJ40021.1| DNA methylase [Streptococcus sanguinis SK1056]
          Length = 412

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
             I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 19  YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 75

Query: 61  TQDIP--DHDVLLAGFPCQPFSQAG 83
            +DIP    DV++ GFPCQ FS AG
Sbjct: 76  PEDIPAERVDVIMGGFPCQAFSIAG 100


>gi|149373126|ref|ZP_01892014.1| DcmB [unidentified eubacterium SCB49]
 gi|149354274|gb|EDM42843.1| DcmB [unidentified eubacterium SCB49]
          Length = 349

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +KI   F G GG+ L  +Q          +++E +    +TY+ N PNT++    I  I 
Sbjct: 1  MKIVSFFAGAGGLDLGFQQA----GFNVIWANEYDKEIWETYEKNHPNTILDKRSIVNIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P+ D ++ G PCQ +S+AG
Sbjct: 57 ADEVPECDGIIGGPPCQSWSEAG 79


>gi|331084584|ref|ZP_08333682.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400654|gb|EGG80261.1| hypothetical protein HMPREF0992_02606 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 324

 Score =  117 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M K    F G+GGI    E T      +  +++EI+ Y  +T++ NF   +   DI ++K
Sbjct: 1  MFKCASFFAGVGGIDYGFESTGV---FKTVYANEIDSYPAQTFELNFDVKVDVRDIHEVK 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          +++IPD D++LAGFPCQ FS AG
Sbjct: 58 SEEIPDFDIMLAGFPCQAFSIAG 80


>gi|260913722|ref|ZP_05920198.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
 gi|260632261|gb|EEX50436.1| modification methylase NgoPII [Pasteurella dagmatis ATCC 43325]
          Length = 329

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++AN P T LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFEKA----GFEIPVANEYDKTIWATFKANHPKTKLIEGDIRSIK 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D P + D ++ G PCQ +S+AG
Sbjct: 57 EDDFPNEIDGIIGGPPCQSWSEAG 80


>gi|262283530|ref|ZP_06061296.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
 gi|262261021|gb|EEY79721.1| cytosine-specific methyltransferase NlaX [Streptococcus sp.
          2_1_36FAA]
          Length = 411

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K  DLF GIGG R  +E   +    EC    E++ ++ K+Y+A F     +   DI  +
Sbjct: 1  MKFLDLFSGIGGFRFGMEAAGH----ECIGFCEVDVFARKSYKAIFNTEKEVELHDIRSV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 PDESIRGLGQVDILCGGFPCQSFSLAG 83


>gi|288904476|ref|YP_003429697.1| DNA methylase [Streptococcus gallolyticus UCN34]
 gi|288731201|emb|CBI12749.1| Putative DNA methylase [Streptococcus gallolyticus UCN34]
          Length = 366

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  DLF GIGG R+ LE   +     C    EI+P++  +Y+  +     + F DI  +
Sbjct: 1  MKFFDLFAGIGGFRMGLESLGH----RCVGFCEIDPFARASYKVIYDTEGDIEFHDIRNV 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQAG 83
           T  I      D++  GFPCQ FS AG
Sbjct: 57 TTDAIRGIGRVDIICGGFPCQAFSIAG 83


>gi|227357019|ref|ZP_03841390.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|261345118|ref|ZP_05972762.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
          4541]
 gi|227162822|gb|EEI47782.1| DNA-cytosine methyltransferase [Proteus mirabilis ATCC 29906]
 gi|282566805|gb|EFB72340.1| DNA (cytosine-5-)-methyltransferase [Providencia rustigianii DSM
          4541]
          Length = 301

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K++  F GIGG  L LE++     +   F  EIN +       N+P+  ++ DI  +K 
Sbjct: 9  YKVSSFFAGIGGFDLGLERS----GMNVVFQCEINKFCQSVLNKNWPDIPLYTDITNLKA 64

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIPD +V   GFPCQ  S A
Sbjct: 65 NDIPDSNVWCGGFPCQDVSSA 85


>gi|315580106|gb|EFU92297.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0309A]
          Length = 382

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +     +   DI  +
Sbjct: 1  MTFLDLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|315574420|gb|EFU86611.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0309B]
          Length = 386

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +     +   DI  +
Sbjct: 5  MTFLDLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSV 60

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 61 SDEFIQSLGPVDILCGGFPCQAFSIAG 87


>gi|227553877|ref|ZP_03983924.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis HH22]
 gi|307285310|ref|ZP_07565454.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0860]
 gi|227176989|gb|EEI57961.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis HH22]
 gi|306502887|gb|EFM72149.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0860]
          Length = 380

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +     +   DI  +
Sbjct: 1  MTFLDLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|153814253|ref|ZP_01966921.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC
          27756]
 gi|145848649|gb|EDK25567.1| hypothetical protein RUMTOR_00462 [Ruminococcus torques ATCC
          27756]
          Length = 422

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DL  GIGG RL LE   +    +C    E + ++  +Y+A +         D+ K+
Sbjct: 4  MTFLDLCSGIGGFRLGLETAGH----KCIGYCEYDKFARASYEAMYDTEGEWKAHDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D+P  D+   GFPCQ  S AG
Sbjct: 60 KPGDVPYADIWCFGFPCQDISVAG 83


>gi|227517066|ref|ZP_03947115.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis TX0104]
 gi|255975250|ref|ZP_05425836.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T2]
 gi|227075490|gb|EEI13453.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus
          faecalis TX0104]
 gi|255968122|gb|EET98744.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis T2]
          Length = 384

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A +     +   DI  +
Sbjct: 5  MTFLDLFAGIGGFRLGMEQAGHH----CIGFCEIDDFARRSYKAIYDTSEEVEMYDITSV 60

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 61 SDEFIQSLGPVDILCGGFPCQAFSIAG 87


>gi|237725529|ref|ZP_04556010.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. D4]
 gi|229436216|gb|EEO46293.1| DNA (cytosine-5-)-methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 374

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 18/96 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------- 52
              DLF GIGG    +    +    +C F+SE + Y+  +Y+AN+ +            
Sbjct: 6  FTFIDLFAGIGGFHTAM----HSVGGKCVFASEWDKYARISYEANYKDIEPDLFQKDSYG 61

Query: 53 -----FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 DI +   + IP  DV   GFPCQPFS AG
Sbjct: 62 NYLFFNNDITEAIPESIPAFDVCCGGFPCQPFSIAG 97


>gi|307710826|ref|ZP_07647254.1| DNA-cytosine methyltransferase family protein [Streptococcus
          mitis SK321]
 gi|307617432|gb|EFN96604.1| DNA-cytosine methyltransferase family protein [Streptococcus
          mitis SK321]
          Length = 406

 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 13 YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 69

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +DIP    DV++ GFPCQ FS AG
Sbjct: 70 PEDIPAERVDVIMGGFPCQAFSIAG 94


>gi|57506196|ref|ZP_00372116.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
          RM3195]
 gi|57015523|gb|EAL52317.1| C-5 cytosine-specific DNA methylase [Campylobacter upsaliensis
          RM3195]
          Length = 315

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGGI L  ++       +  ++ E++  +  TY+AN  + +I  D+AK+  
Sbjct: 1  MKIGSLFAGIGGIELGFKKA----GFKTAWAVELDSKACITYKANHKHKIINNDLAKVDL 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +   D+L AGFPCQ FS AG
Sbjct: 57 KSLSKIDILTAGFPCQAFSVAG 78


>gi|320108256|ref|YP_004183846.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319926777|gb|ADV83852.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 347

 Score =  116 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            +  LF GIGGI L  E+          +  EINPY  +    NFP+   + DI +   
Sbjct: 4  FTVGSLFAGIGGIDLGFERA----GFRTVWQVEINPYCQRVLAKNFPHAERYADIRECGA 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   DV++ GFPCQ  S AG
Sbjct: 60 HNLKPVDVIVGGFPCQDISNAG 81


>gi|15616070|ref|NP_244375.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
 gi|10176132|dbj|BAB07227.1| cytosine-specific methyltransferase [Bacillus halodurans C-125]
          Length = 326

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               LF G GG+ +  E+       +  ++++I+  +  T++      ++ GDI+KI  
Sbjct: 6  FTAVSLFSGAGGLDMGFER----IGFKIIWANDIDEDACATHRLWSDAEVVQGDISKIDV 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP  D+LL G+PCQ FS AG
Sbjct: 62 STIPSADILLGGWPCQGFSLAG 83


>gi|113478034|ref|YP_724095.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169082|gb|ABG53622.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 413

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           LK  +LF GIGG  L +       N++  ++++++    + YQ+NF ++ ++  DI KI 
Sbjct: 29  LKAIELFAGIGGFCLGMRAA----NIKTIWANDVSKLCCQVYQSNFGSSSIVLDDINKIN 84

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
             +IP+HD+L AGFPCQPFSQAG
Sbjct: 85  LLEIPEHDILTAGFPCQPFSQAG 107


>gi|324323924|gb|ADY24967.1| modification methylase SPRI [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 290

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          L   DLF G+GG R  +EQ  +    +C    EI+P++ K+Y+A           DI K+
Sbjct: 3  LTFLDLFSGVGGFRFGMEQAGH----KCLGYVEIDPHARKSYEAIHQTEGEWSAHDITKV 58

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            +++       DV+  GFPCQ FS AG
Sbjct: 59 SNKELRRFRGKVDVICGGFPCQAFSIAG 86


>gi|322376119|ref|ZP_08050628.1| DNA modification methylase [Streptococcus sp. C300]
 gi|321278887|gb|EFX55931.1| DNA modification methylase [Streptococcus sp. C300]
          Length = 406

 Score =  116 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 13 YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 69

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +DIP    DV++ GFPCQ FS AG
Sbjct: 70 PEDIPAERVDVIMGGFPCQAFSIAG 94


>gi|332665024|ref|YP_004447812.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
 gi|332333838|gb|AEE50939.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
          Length = 366

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          +++  LF G GG+ +   +       +  ++++ +  +  +Y  N  N +  GDI     
Sbjct: 1  MRVVSLFSGAGGLDIGFRKA----GFDIVWANDFDKNACASYSKNIGNHIRCGDINHYLD 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +  DI + D+++ G PCQ FS AG
Sbjct: 57 EISDIKNVDLVMGGPPCQGFSVAG 80


>gi|157151353|ref|YP_001449946.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157076147|gb|ABV10830.1| cytosine-specific methyltransferase [Streptococcus gordonii str.
          Challis substr. CH1]
          Length = 406

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I   F G+GGI L  EQT         +++E + Y+ +TYQ N P+T + G DI  ++
Sbjct: 13 YNIAAFFSGVGGIELGFEQTNE---FRVVYANEFDKYARQTYQLNHPDTYLDGRDIHDVQ 69

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +DIP    DV++ GFPCQ FS AG
Sbjct: 70 PEDIPAERVDVIMGGFPCQAFSIAG 94


>gi|296313785|ref|ZP_06863726.1| modification methylase NgoPII [Neisseria polysaccharea ATCC
          43768]
 gi|296839714|gb|EFH23652.1| modification methylase NgoPII [Neisseria polysaccharea ATCC
          43768]
          Length = 330

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +KI  LF G GG+ L  E+       E   ++E +     T++AN P   LI GDI  IK
Sbjct: 1  MKIISLFSGCGGLDLGFEKA----GFEVPVANEYDKTIWSTFKANHPKTHLIEGDIRSIK 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|53804329|ref|YP_114062.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758090|gb|AAU92381.1| C-5 cytosine-specific DNA methylase family protein [Methylococcus
           capsulatus str. Bath]
          Length = 345

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
             +  LF G GG+ L     F               +++EIN  + +TY+ N  + +  G
Sbjct: 42  FSVISLFSGCGGMDLGFRGGFEFLGKRYAKLPFNVIWANEINEAACQTYRRNLGSHIHHG 101

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++     P+ DV++ GFPCQ  S  G
Sbjct: 102 DIWQMMDSLPPEADVVIGGFPCQDISVNG 130


>gi|282851890|ref|ZP_06261250.1| modification methylase Rho11sI family protein [Lactobacillus
          gasseri 224-1]
 gi|282556899|gb|EFB62501.1| modification methylase Rho11sI family protein [Lactobacillus
          gasseri 224-1]
          Length = 343

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          +   D F GIGG R  LE+  +    +C    E + ++ K+YQA +     F   DI ++
Sbjct: 1  MNFIDFFAGIGGFRSGLEKAGH----KCVGFVEFDKFARKSYQAMYDTKGEFTGYDIRQV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + +D+P  D+   G PCQ  S AG
Sbjct: 57 RGKDLPKADIWTFGSPCQDVSIAG 80


>gi|329121769|ref|ZP_08250386.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
          19965]
 gi|327468239|gb|EGF13725.1| DNA (cytosine-5-)-methyltransferase [Dialister micraerophilus DSM
          19965]
          Length = 416

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ DLF G+GG  L L +  N    E  ++++  P     ++   Y+ NFP T I   D
Sbjct: 6  IKVVDLFAGVGGFHLGLSRASNR--YEVVWANQYEPSRKNQFAYNIYKKNFPKTPISNED 63

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I KI   +IP  D+L+AGFPCQ +S A
Sbjct: 64 IRKINKDEIPKMDLLVAGFPCQDYSVA 90


>gi|323650438|gb|ADX97294.1| M.Cac8I [Clostridium acetobutylicum]
          Length = 398

 Score =  116 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 15/93 (16%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDI 56
           ++++   F G GG+ L      +    E  +S++ +  +V+TY  N    + +  + GDI
Sbjct: 25  LMRVISFFSGAGGMDLGFTLAGH----EIVWSNDFDKDAVQTYNENIGKYWKHESVLGDI 80

Query: 57  AKIKTQD-------IPDHDVLLAGFPCQPFSQA 82
            K+ ++        IPD DV++ GFPCQ FS A
Sbjct: 81  TKLLSKPFEEIDKIIPDGDVVIGGFPCQGFSIA 113


>gi|225017397|ref|ZP_03706589.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
          DSM 5476]
 gi|224949807|gb|EEG31016.1| hypothetical protein CLOSTMETH_01323 [Clostridium methylpentosum
          DSM 5476]
          Length = 485

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK 58
          +   D F GIGG R   E       + C    EI+ Y+ ++Y+A      +     DI K
Sbjct: 4  MTFLDFFAGIGGFRKGFELC----GMRCVGHCEIDKYADRSYRAIHDVKEDEWYAADITK 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +   D+P  D+   GFPCQ  S AG
Sbjct: 60 VAPADLPRADLWAGGFPCQDISVAG 84


>gi|257060181|ref|YP_003138069.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256590347|gb|ACV01234.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 336

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 8/90 (8%)

Query: 1   MLKITDLFCGIGGIRLDLE-------QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
           +LK +DLFCGIGG R+ L+       +        C FSS+I+P + K Y+ NF     F
Sbjct: 15  ILKYSDLFCGIGGFRVALDIVCSTSKRWDKKIKPICVFSSDIDPDAQKNYELNFGEKP-F 73

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI KI+ Q IP+H++L AGFPCQPFS  G
Sbjct: 74  GDITKIEAQSIPNHNLLFAGFPCQPFSICG 103


>gi|327439466|dbj|BAK15831.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 286

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K  DLF GIGG RL +E   +    EC    E + Y+ K+Y+   N        DI  I
Sbjct: 1  MKFLDLFAGIGGFRLGMEMADH----ECIGYVEWDEYARKSYEAIHNTNGEWTEHDITGI 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
            +   +     DV+  GFPCQ FS AG
Sbjct: 57 TDEQWREFKGEIDVICGGFPCQAFSVAG 84


>gi|305665822|ref|YP_003862109.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
 gi|88710593|gb|EAR02825.1| DNA (cytosine-5-)-methyltransferase [Maribacter sp. HTCC2170]
          Length = 408

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFP-NTLIFGD 55
          LK+ +LF G+GG RL LE T    N E  +S++  P     ++   Y+A F        D
Sbjct: 4  LKVIELFAGVGGFRLGLENTG---NYEVVWSNQWEPATKAQHASMVYEARFGSENHSNQD 60

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I+++ T +IPD D+L+ GFPCQ +S A
Sbjct: 61 ISEVPTGEIPDADILVGGFPCQDYSVA 87


>gi|323484104|ref|ZP_08089474.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
          WAL-14163]
 gi|323402546|gb|EGA94874.1| hypothetical protein HMPREF9474_01225 [Clostridium symbiosum
          WAL-14163]
          Length = 430

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   DL  GIGG RL LE   +    +C    E + Y+  +Y+A +         D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLEAAGH----KCIGYCEYDKYARASYEAMYDAKGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+   GFPCQ  S AG
Sbjct: 60 KPGDIPYADIWTFGFPCQDISIAG 83


>gi|1127162|pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound
          To Dna
 gi|1127163|pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound
          To Dna
          Length = 324

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|67924690|ref|ZP_00518097.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67853467|gb|EAM48819.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 420

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M+   DLF GIGG+RL LE      N+E  C  SSEI+  + +TY  NF + +  GDI  
Sbjct: 1  MINFIDLFAGIGGMRLGLELACKKLNIETRCILSSEIDYKACETYALNF-DEIPQGDIKN 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    I   + +LAG PCQPFS AG
Sbjct: 60 ID--KISSFNFILAGSPCQPFSYAG 82


>gi|212710423|ref|ZP_03318551.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens
          DSM 30120]
 gi|212686843|gb|EEB46371.1| hypothetical protein PROVALCAL_01485 [Providencia alcalifaciens
          DSM 30120]
          Length = 330

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          +I   F G GG+ L  EQ          +++E +     TY+ N P+T L    I  I +
Sbjct: 4  RIVSFFAGAGGLDLGFEQA----GFNVIWANEFDKDIWATYKKNHPHTELDQRSITNITS 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P+ D ++ G PCQ +S+AG
Sbjct: 60 DEVPECDGIIGGPPCQSWSEAG 81


>gi|159025987|emb|CAO87894.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 329

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 1  MTFADFYAGIGGFRLGLEQ----IGWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 57 SLLPDFEVFCGGFPCQPFSRAG 78


>gi|254413040|ref|ZP_05026812.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196180204|gb|EDX75196.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 355

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQ 62
          I  LF G GG+ L   Q          +++E +    +TYQ+N PNT +   DI  + + 
Sbjct: 11 IVSLFSGCGGLDLGFRQA----GFNVVWANEYDKDIWQTYQSNHPNTFLDRRDIRHVPSA 66

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIPD   ++ G PCQ +S+AG
Sbjct: 67 DIPDCFGIVGGPPCQSWSEAG 87


>gi|319776343|ref|YP_004138831.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
 gi|127460|sp|P20589|MTH3_HAEAE RecName: Full=Modification methylase HaeIII; Short=M.HaeIII;
          AltName: Full=Cytosine-specific methyltransferase
          HaeIII
 gi|148915|gb|AAA24970.1| methyltransferase [Haemophilus aegyptius]
 gi|2961233|gb|AAC05696.1| HaeIII DNA modification methyltransferase [Haemophilus influenzae
          biotype aegyptius]
 gi|317450934|emb|CBY87160.1| Modification methylase HaeIII [Haemophilus influenzae F3047]
          Length = 330

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|228472108|ref|ZP_04056874.1| cytosine-specific methyltransferase NlaX [Capnocytophaga
          gingivalis ATCC 33624]
 gi|228276311|gb|EEK15035.1| cytosine-specific methyltransferase NlaX [Capnocytophaga
          gingivalis ATCC 33624]
          Length = 367

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++          + SEI+  ++  Y+ NFP+    GDI  ++ 
Sbjct: 1  MKIIDLFSGIGGFALGFQRAGYQFTEH--YFSEIDKQAIANYKYNFPHAKYIGDITTLQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DI   D++  G PCQ FS AG
Sbjct: 59 ADIAGADIITFGSPCQDFSLAG 80


>gi|332879681|ref|ZP_08447373.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332682372|gb|EGJ55277.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 299

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++     N    + SEI+ +++  Y+ NFPN    GDI  I+ 
Sbjct: 1  MKIIDLFSGIGGFSLGFQRAG--YNFTEHYFSEIDKHAIANYKYNFPNAKHIGDITTIQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   D++  G PC  FS AG
Sbjct: 59 ANLAGADIITFGSPCVDFSVAG 80


>gi|967022|emb|CAA62381.1| DNA (cytosine-5-)-methyltransferase [Geobacillus
          stearothermophilus]
 gi|1262297|gb|AAA96793.1| m5C-multispecific methyltransferase [Geobacillus
          stearothermophilus]
 gi|1589631|prf||2211376A cytosine-C5-DNA methyltransferase
          Length = 534

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L + +LF G G + + L            ++++ +  +   Y+ N  + ++ GDI  I  
Sbjct: 14 LTVAELFAGGGLMAVGLRAA----GYNLVWANDFDKSACAAYRHNLGDHIVHGDITAIDP 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIPD DV+  G PCQ +S AG
Sbjct: 70 ADIPDTDVIAGGPPCQDYSVAG 91


>gi|332968936|gb|EGK07982.1| DNA-cytosine methyltransferase [Desmospora sp. 8437]
          Length = 379

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           ++ DLF G GG+           + E  ++++ N Y+VKTY  NF N  + GDI  +  
Sbjct: 5  FRVIDLFSGAGGMSAGFSNLSKG-DFEPVWANDYNAYAVKTYNRNFDNHCVHGDIVDLLG 63

Query: 60 -KTQDIPDHDVLLAGFPCQPFSQ 81
            T +IP  D+++ G PCQ FS 
Sbjct: 64 DTTVEIPKADLVIGGPPCQGFSL 86


>gi|319897026|ref|YP_004135221.1| modification methylase haeiii [Haemophilus influenzae F3031]
 gi|317432530|emb|CBY80890.1| Modification methylase HaeIII [Haemophilus influenzae F3031]
          Length = 330

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 1  MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 57 DEFPKCDGIIGGPPCQSWSEGG 78


>gi|127417|sp|P25262|MTB1_HERAU RecName: Full=Modification methylase HgiBI; Short=M.HgiBI;
          AltName: Full=Cytosine-specific methyltransferase HgiBI
 gi|43478|emb|CAA38927.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
           +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P        GDI  
Sbjct: 4  FRFIDLFAGIGGFRLGLEA----VGGVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITA 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  Q +P HDVL+ G PCQP+S AG
Sbjct: 60 I--QQLPAHDVLVGGVPCQPWSIAG 82


>gi|40218563|gb|AAR83217.1| chromosome partitioning protein parB [Streptococcus pyogenes]
 gi|50261608|gb|AAT72376.1| methylase [Streptococcus pyogenes]
          Length = 388

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F GIGG R  LE       + C    E + ++V++YQA +         DI K+
Sbjct: 4  LTFIDFFAGIGGFRRGLELA----GMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+  AG PCQ  S AG
Sbjct: 60 KPNDIPKADIWTAGSPCQNVSIAG 83


>gi|50914489|ref|YP_060461.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50903563|gb|AAT87278.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 422

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F GIGG R  LE       + C    E + ++V++YQA +         DI K+
Sbjct: 4  LTFIDFFAGIGGFRRGLELA----GMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  DIP  D+  AG PCQ  S AG
Sbjct: 60 KPNDIPKADIWTAGSPCQNVSIAG 83


>gi|254443346|ref|ZP_05056822.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198257654|gb|EDY81962.1| C-5 cytosine-specific DNA methylase superfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 349

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              +D+F G GG R  LE+        C FS E++ ++ +TYQANF  T  +GDI  +  
Sbjct: 34  FTFSDIFAGAGGGRFALER----LEGRCVFSCELDKFAQRTYQANFGETP-YGDIFDVSP 88

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           + +P H++L AGFPCQPFS AG
Sbjct: 89  KSVPPHNILFAGFPCQPFSHAG 110


>gi|149190453|ref|ZP_01868724.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
 gi|148835707|gb|EDL52673.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
          Length = 373

 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+   F GIGG  L  E+      +E  F  E+N +  K  + ++P+  +  DI  +  
Sbjct: 81  FKVASFFAGIGGFDLGCERA----GMEVVFQCEVNSFCQKVLKKHWPSIPLHSDIKTLSA 136

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            DIPD ++   GFPCQ  S A
Sbjct: 137 SDIPDANIWCGGFPCQDVSLA 157


>gi|292486555|ref|YP_003529421.1| modification methylase [Erwinia amylovora CFBP1430]
 gi|291551968|emb|CBA19005.1| modification methylase [Erwinia amylovora CFBP1430]
          Length = 379

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  +F G GG+ L   Q       +  ++++ +  +  TY+ N  + +I GD+  +   
Sbjct: 17 TVVSMFSGCGGMDLGFVQA----GYDVVWANDFDADACLTYKRNIGD-IIHGDVTTLDVP 71

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D+ + DVL AGFPCQPFS AG
Sbjct: 72 DVKNLDVLTAGFPCQPFSNAG 92


>gi|127435|sp|P25264|MTC2_HERAU RecName: Full=Modification methylase HgiCII; Short=M.HgiCII;
          AltName: Full=Cytosine-specific methyltransferase
          HgiCII
 gi|43464|emb|CAA38935.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
           +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P        GDI  
Sbjct: 4  FRFIDLFAGIGGFRLGLEA----VGGICVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITT 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  Q +P HD+++ G PCQP+S AG
Sbjct: 60 L--QQLPAHDLVVGGVPCQPWSIAG 82


>gi|314942817|ref|ZP_07849633.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133C]
 gi|314953501|ref|ZP_07856416.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133A]
 gi|314992545|ref|ZP_07857964.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|314997818|ref|ZP_07862728.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a01]
 gi|313588159|gb|EFR67004.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a01]
 gi|313592912|gb|EFR71757.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|313594483|gb|EFR73328.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133A]
 gi|313598452|gb|EFR77297.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133C]
          Length = 144

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|252957|gb|AAA09969.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
           +  DLF GIGG RL LE         C  S+EI+  ++K Y+ N+P        GDI  
Sbjct: 4  FRFIDLFAGIGGFRLGLEA----VGGICVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITT 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  Q +P HD+++ G PCQP+S AG
Sbjct: 60 L--QQLPAHDLVVGGVPCQPWSIAG 82


>gi|313677762|ref|YP_004055758.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944460|gb|ADR23650.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 378

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          LK    FCG GG+ L L   FN+ N        E  ++++ + Y+ + Y +NF +  I  
Sbjct: 10 LKAASFFCGCGGMDLGLVGNFNYLNGNYSSLPFEIVYANDFDTYATEIYNSNFEHKCITK 69

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          DI  +   +IP+HD+LL GFPCQ FS 
Sbjct: 70 DIKDVSMSEIPEHDILLGGFPCQSFSI 96


>gi|292897792|ref|YP_003537161.1| cytosine-specific DNA methylase [Erwinia amylovora ATCC 49946]
 gi|291197640|emb|CBJ44735.1| putative modification methylase (cytosine-specific DNA methylase)
          [Erwinia amylovora ATCC 49946]
          Length = 372

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  +F G GG+ L   Q       +  ++++ +  +  TY+ N  + +I GD+  +   
Sbjct: 10 TVVSMFSGCGGMDLGFVQA----GYDVVWANDFDADACLTYKRNIGD-IIHGDVTTLDVP 64

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D+ + DVL AGFPCQPFS AG
Sbjct: 65 DVKNLDVLTAGFPCQPFSNAG 85


>gi|238855331|ref|ZP_04645644.1| methyl transferase [Lactobacillus jensenii 269-3]
 gi|282933726|ref|ZP_06339082.1| Phi-3T prophage-derived modification methylase Phi3TI
          [Lactobacillus jensenii 208-1]
 gi|313472896|ref|ZP_07813384.1| type II DNA modification methyltransferase [Lactobacillus
          jensenii 1153]
 gi|238832031|gb|EEQ24355.1| methyl transferase [Lactobacillus jensenii 269-3]
 gi|239528918|gb|EEQ67919.1| type II DNA modification methyltransferase [Lactobacillus
          jensenii 1153]
 gi|281302166|gb|EFA94412.1| Phi-3T prophage-derived modification methylase Phi3TI
          [Lactobacillus jensenii 208-1]
          Length = 343

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          +   D F GIGG R  LE+  +    +C    E + ++ K+YQA +     F   DI ++
Sbjct: 1  MNFIDFFAGIGGFRSGLEKAGH----KCVGFVEFDKFARKSYQAMYDTKGEFTGYDIRQV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + +D+P  D+   G PCQ  S AG
Sbjct: 57 RGKDLPTADIWTFGSPCQDVSIAG 80


>gi|288958310|ref|YP_003448651.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
 gi|288910618|dbj|BAI72107.1| DNA (cytosine-5-)-methyltransferase [Azospirillum sp. B510]
          Length = 375

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K+ DLFCG GG+ L   Q          F+ + + ++ +TY+ NF + +I GDI +I  +
Sbjct: 31  KLIDLFCGAGGLTLGFVQA----GFRPVFAIDDDRHAAETYRLNFGDHIICGDIRQI--E 84

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
             P  DV++ G PCQ FS+ G
Sbjct: 85  SFPAADVVIGGPPCQGFSRLG 105


>gi|320156908|ref|YP_004189287.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319932220|gb|ADV87084.1| DNA-cytosine methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 48/116 (41%), Gaps = 38/116 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------------- 48
               DLF GIGG+R   E    +   +C F+SE +  + +TY AN               
Sbjct: 98  FTFIDLFAGIGGLRKGFE----NVGGKCVFTSEWDEKARRTYLANHYVDESELPYFLNSE 153

Query: 49  -----NTLIFGDIAKIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
                    F DI +I                  + IP HDVLLAGFPCQPFS AG
Sbjct: 154 QDDGMKNTNFMDITQITLSGDPEATELQQQASILKHIPKHDVLLAGFPCQPFSLAG 209


>gi|298504551|gb|ADI83274.1| DNA cytosine methyltransferase [Geobacter sulfurreducens KN400]
          Length = 428

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--- 59
           ++ DLFCG GG+ L   + F +      ++++ N Y+ +TY  NF N  + GDI +I   
Sbjct: 36  RVIDLFCGAGGMTLGFTK-FTNHVFTPVWANDFNAYAARTYNRNFGNHCVVGDIVEILER 94

Query: 60  KTQDIPDHDVLLAGFPCQPFSQ 81
               IP  DV++ G PCQ FS 
Sbjct: 95  PETVIPKADVVIGGPPCQGFSL 116


>gi|7243959|gb|AAB21481.2| cytosine DNA methyltransferase homolog [Neisseria gonorrhoeae]
          Length = 347

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   
Sbjct: 17 KILSLFSGCGGLYLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPN 72

Query: 63 D--IPDHDVLLAGFPCQPFSQ 81
          D  IPD D++L GFPCQ FS 
Sbjct: 73 DPTIPDCDIILGGFPCQDFSM 93


>gi|167920593|ref|ZP_02507684.1| cytosine-specific DNA methylase [Burkholderia pseudomallei
          BCC215]
          Length = 454

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L L++        C +++E   +    Y+ NF      GDI  I  
Sbjct: 4  FRFVDLFAGLGGFHLALQR----LGGTCVYAAEWQEHLRDLYEVNFGLRP-EGDITLISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +D+P HDVL AGFPCQPFS+AG
Sbjct: 59 KDVPSHDVLTAGFPCQPFSKAG 80


>gi|159029905|emb|CAO90959.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 346

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 18 LTFADFYAGIGGFRLGLEQ----IGWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 73

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 74 SLLPDFEVFCGGFPCQPFSRAG 95


>gi|154502686|ref|ZP_02039746.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
 gi|153796569|gb|EDN78989.1| hypothetical protein RUMGNA_00499 [Ruminococcus gnavus ATCC 29149]
          Length = 458

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
           ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 35  IRFFDLFSGIGGFREGLRRAG---GFTCVGHCEVDAYADKNYRLLFDTEGEWFCNDARTI 91

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +T+ +PD D+L AGFPCQ FS AG
Sbjct: 92  ETERMPDFDLLCAGFPCQAFSIAG 115


>gi|127447|sp|P25266|MTE1_HERAU RecName: Full=Modification methylase HgiEI; Short=M.HgiEI;
          AltName: Full=Cytosine-specific methyltransferase HgiEI
 gi|43471|emb|CAA38944.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 437

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
           +  DLF GIGG RL LE         C  S+EI+  ++K Y  N+P        GDI +
Sbjct: 4  FRFIDLFAGIGGFRLGLEA----VGGVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDITQ 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  Q +P HDVL+ G PCQP+S AG
Sbjct: 60 I--QQLPAHDVLVGGVPCQPWSIAG 82


>gi|192824080|ref|YP_001994542.1| gp84 [Mycobacterium phage KBG]
 gi|190610310|gb|ACE79832.1| gp84 [Mycobacterium phage KBG]
          Length = 237

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          + +  LF GIGG+ L LE+      +      EI+P+  +  + ++P+     D+     
Sbjct: 1  MNVLSLFAGIGGLELGLER----LGMRVVGQVEIDPFCQQVLEKHWPDVPKHDDVRTAVE 56

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++++ P  DV+  GFPCQPFS AG
Sbjct: 57 WWESEERPGVDVICGGFPCQPFSSAG 82


>gi|315639354|ref|ZP_07894516.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
          JV21]
 gi|315480680|gb|EFU71322.1| DNA (cytosine-5-)-methyltransferase [Campylobacter upsaliensis
          JV21]
          Length = 320

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  +  LF G GG+ L   +       E  F+++I+  + ++Y+ N    ++  DI  +
Sbjct: 1  MKPSVISLFSGCGGLDLGFIKA----GFEVVFANDIDKEACESYEKNIGKHILCKDIYTL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            ++IP+ D+L+ GFPC  F+ A
Sbjct: 57 DVKEIPNADLLIGGFPCLGFTIA 79


>gi|332881189|ref|ZP_08448845.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332680863|gb|EGJ53804.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 367

 Score =  114 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI DLF GIGG  L  ++          + SEI+ +++  Y+ NFPN    GDI  I+ 
Sbjct: 1  MKIIDLFSGIGGFSLGFQRASYQFTEH--YFSEIDKHAIANYKYNFPNAKHIGDITTIQP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   D++  G PC  FS AG
Sbjct: 59 ANLAGADIITFGSPCVDFSVAG 80


>gi|314055098|ref|YP_004063436.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
 gi|313574989|emb|CBI70002.1| cytosine-specific methyltransferase [Ostreococcus tauri virus 2]
          Length = 315

 Score =  114 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +  DLF G G     LE T      EC F+++ +  S + Y  N  +T + GD+  I  +
Sbjct: 4  RFIDLFAGTGAFTYALENTGK---YECVFANDFDKSSKEIYTNNHDSTFVLGDLNDILVE 60

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          DIP+HD+L  GFPCQPFS AG
Sbjct: 61 DIPEHDLLCGGFPCQPFSIAG 81


>gi|157412142|ref|YP_001481483.1| DNA cytosine methylase [Escherichia coli APEC O1]
 gi|99867167|gb|ABF67812.1| cytosine methylase [Escherichia coli APEC O1]
          Length = 489

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
               DLF GIGG+R   +        +C F+SE N YS +TY+AN+           DI 
Sbjct: 106 FSFIDLFAGIGGLRSGFDA----IGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIR 161

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 162 DITLSNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 203


>gi|166366204|ref|YP_001658477.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
 gi|166088577|dbj|BAG03285.1| DNA cytosine methylase [Microcystis aeruginosa NIES-843]
          Length = 346

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   D + GIGG RL LEQ       +C FS+E NP  VKTY  NF  ++   D+  +  
Sbjct: 18 LTFADFYAGIGGFRLGLEQ----IGWQCVFSNENNPDCVKTYNHNFHESIKPQDVEALIP 73

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD +V   GFPCQPFS+AG
Sbjct: 74 SLLPDFEVFCGGFPCQPFSRAG 95


>gi|219870523|ref|YP_002474898.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219690727|gb|ACL31950.1| Type II modification methyltransferase HpaII/DNA
           (cytosine-5-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 350

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF G GG RL +E+   +    C FSSEI+  + KTY  NF     +GDI  +  
Sbjct: 26  FTFIDLFAGFGGFRLAMEKLGGY----CVFSSEIDENAQKTYATNFGEKP-YGDITLEET 80

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
            + IP   D+L AGFPCQ FS AG
Sbjct: 81  KRLIPTTFDILCAGFPCQAFSIAG 104


>gi|226807724|ref|YP_002791420.1| Dcm [Enterobacter cloacae]
 gi|226810038|ref|YP_002791733.1| Dcm [Enterobacter cloacae]
 gi|226425951|gb|ACO54044.1| Dcm [Enterobacter cloacae]
 gi|226426265|gb|ACO54357.1| Dcm [Enterobacter cloacae]
          Length = 489

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
               DLF GIGG+R   +        +C F+SE N YS +TY+AN+           DI 
Sbjct: 106 FSFIDLFAGIGGLRSGFDA----IGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIR 161

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 162 DITLSNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 203


>gi|38347986|ref|NP_941235.1| DNA cytosine methylase [Serratia marcescens]
 gi|190410308|ref|YP_001965811.1| dcm [Klebsiella pneumoniae]
 gi|38259463|emb|CAE51691.1| DNA-cytosine methyltransferase [Serratia marcescens]
 gi|146151102|gb|ABQ02868.1| dcm [Klebsiella pneumoniae]
          Length = 475

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 24/102 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
               DLF GIGG+R   +        +C F+SE N YS +TY+AN+           DI 
Sbjct: 92  FSFIDLFAGIGGLRSGFDA----IGGKCLFTSEWNTYSSRTYRANWYCDENEHRFNSDIR 147

Query: 58  KIK----------------TQDIPDHDVLLAGFPCQPFSQAG 83
            I                    IPDHDVLLAGFPCQPFS AG
Sbjct: 148 DITLSNRPEVTDDEAYKFIDASIPDHDVLLAGFPCQPFSIAG 189


>gi|228469860|ref|ZP_04054799.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
 gi|228308495|gb|EEK17283.1| modification methylase HaeIII [Porphyromonas uenonis 60-3]
          Length = 359

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          + +  LF G GG+ L   +           ++E +     T++ NFP+  +  GDI KI 
Sbjct: 3  MTLISLFSGAGGMDLGFHKA----GFTTILANEYDKTICPTFKHNFPDVPLLEGDIRKIP 58

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
           +  P H D ++ G PCQ +S+AG
Sbjct: 59 ERLFPRHIDGIIGGPPCQSWSEAG 82


>gi|187778292|ref|ZP_02994765.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
          15579]
 gi|187771917|gb|EDU35719.1| hypothetical protein CLOSPO_01884 [Clostridium sporogenes ATCC
          15579]
          Length = 355

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  D+FCGIG +R+  EQ  +    EC +S E + +  K Y   F      GDI K + 
Sbjct: 1  MKFIDMFCGIGTVRMGFEQAGH----ECVYSIEWDKWKRKIYSIIFGGEPEGGDITKCRA 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D    G PCQ FS AG
Sbjct: 57 NELPKSDCWCFGAPCQDFSVAG 78


>gi|314942783|ref|ZP_07849602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133C]
 gi|314953681|ref|ZP_07856564.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133A]
 gi|313594323|gb|EFR73168.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133A]
 gi|313598474|gb|EFR77319.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133C]
          Length = 380

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|300933957|ref|ZP_07149213.1| DNA-cytosine methyltransferase [Corynebacterium resistens DSM
          45100]
          Length = 363

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          K+   F G GG+ L L+        +  ++++ +  +V TY+ N    ++ GDI +I   
Sbjct: 6  KVVSTFAGCGGLDLGLQ----DVGFDIVWANDFSKEAVATYRHNINAHIVDGDITEIDPF 61

Query: 62 --QDIPDHDVLLAGFPCQPFSQ 81
            + IPD D++  GFPCQ FS 
Sbjct: 62 TDETIPDADLVTGGFPCQDFSM 83


>gi|228474527|ref|ZP_04059258.1| site-specific DNA methylase [Staphylococcus hominis SK119]
 gi|228271190|gb|EEK12558.1| site-specific DNA methylase [Staphylococcus hominis SK119]
          Length = 414

 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           +  LF G GG+ L  ++          ++++    +V TY+ N  + +++GDI KI   
Sbjct: 5  NVISLFAGAGGMDLGFKKA----GFNIIWANDFEKDAVTTYKNNIGDHIVYGDITKIDIK 60

Query: 62 QDIP---DHDVLLAGFPCQPFSQ 81
           ++P   + D+++ GFPCQ FS 
Sbjct: 61 NELPNEEEIDLVIGGFPCQGFSV 83


>gi|325690436|gb|EGD32439.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis
          SK115]
          Length = 390

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +   D F GIGG R  LE T     ++C    E + ++ K+Y+A +         DI  I
Sbjct: 3  ITFLDFFAGIGGFRCGLELT----GMKCIGYCEKDKFARKSYEAMYETKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 NPAQLPKADLWCAGSPCQNLSIAG 82


>gi|69244913|ref|ZP_00603103.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257883136|ref|ZP_05662789.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|257891884|ref|ZP_05671537.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,410]
 gi|258616872|ref|ZP_05714642.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|289567034|ref|ZP_06447433.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          D344SRF]
 gi|293563825|ref|ZP_06678258.1| methyl transferase [Enterococcus faecium E1162]
 gi|294619669|ref|ZP_06699086.1| methyl transferase [Enterococcus faecium E1679]
 gi|68196079|gb|EAN10510.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium DO]
 gi|257818794|gb|EEV46122.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,502]
 gi|257828244|gb|EEV54870.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          1,231,410]
 gi|289161170|gb|EFD09071.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          D344SRF]
 gi|291594089|gb|EFF25546.1| methyl transferase [Enterococcus faecium E1679]
 gi|291604195|gb|EFF33696.1| methyl transferase [Enterococcus faecium E1162]
          Length = 380

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|302866239|ref|YP_003834876.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
 gi|302569098|gb|ADL45300.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
          Length = 368

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          L + DLF G GG+ +      ++       S E +  +  TY ANF      + DI KIK
Sbjct: 8  LSMIDLFAGCGGMTVGF----HNEGFRPILSVEWDRAAASTYAANFGKEHTRWEDIEKIK 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            +IPD DV++ G PCQ FS  G
Sbjct: 64 DDEIPDADVIIGGPPCQGFSNLG 86


>gi|315174236|gb|EFU18253.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX1346]
          Length = 192

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG RL +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFRLGMEQAGH----QCIGFCEIDEFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQ---DIPDHDVLLAGFPCQPFSQAG 83
            +    +   DVL  GFPCQ FS AG
Sbjct: 57 SDEFVRSLGPVDVLCGGFPCQAFSIAG 83


>gi|268680341|ref|YP_003304772.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
          6946]
 gi|268618372|gb|ACZ12737.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
          6946]
          Length = 335

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + I  LF G GG+ L  E+       +  +++E +    +T++ NFP+T L    I  I 
Sbjct: 1  MNIISLFSGAGGLDLGFEKA----GFKTVWANEYDKEIWETFEKNFPHTTLDRRSIRNIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          + DIP+   L+ G PCQ +S+AG
Sbjct: 57 SCDIPEAIGLIGGPPCQSWSEAG 79


>gi|262113733|emb|CAR95400.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 417

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWCAGSPCQNVSIAG 82


>gi|113971536|ref|YP_735329.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
 gi|113886220|gb|ABI40272.1| DNA-cytosine methyltransferase [Shewanella sp. MR-4]
          Length = 417

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K  DLF GIGG  L L      +  +  FSSE +  +  TY  N+  T  FGDI +   
Sbjct: 82  FKFIDLFAGIGGFNLAL----TSQGGKAVFSSEWDKSAKITYFNNYGKTP-FGDINQFTA 136

Query: 62  Q---------DIPDHDVLLAGFPCQPFSQAG 83
           Q          IPDHDVL  GFPCQPFS AG
Sbjct: 137 QGVSNEFIETMIPDHDVLAGGFPCQPFSHAG 167


>gi|153815491|ref|ZP_01968159.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC
          27756]
 gi|145847133|gb|EDK24051.1| hypothetical protein RUMTOR_01726 [Ruminococcus torques ATCC
          27756]
          Length = 439

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 16 IRFFDLFSGIGGFREGLRRAG---GFTCVGHCEVDAYADKNYRLLFDTEGEWFCNDARTI 72

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +T+ +PD D+L AGFPCQ FS AG
Sbjct: 73 ETERMPDFDLLCAGFPCQAFSIAG 96


>gi|257870038|ref|ZP_05649691.1| DNA methylase [Enterococcus gallinarum EG2]
 gi|257804202|gb|EEV33024.1| DNA methylase [Enterococcus gallinarum EG2]
          Length = 401

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKT 61
           +   F G+GGI L  EQT         +++E +  +  TY  N+P T +   DI ++ +
Sbjct: 14 TVAAFFSGVGGIELGFEQTGK---FRVVYANEFDKNAQITYAENYPQTPLDKRDIHEVDS 70

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +++P  D+++ GFPCQ FS AG
Sbjct: 71 KEVPVSDLIVGGFPCQAFSIAG 92


>gi|313575370|emb|CBR26899.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 419

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWCAGSPCQNVSIAG 82


>gi|260664324|ref|ZP_05865177.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|260562210|gb|EEX28179.1| DNA-cytosine methyltransferase [Lactobacillus jensenii SJ-7A-US]
          Length = 298

 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +K  DLF G+GG R  LE   +    +C    E + ++ K+YQA +   +     DI   
Sbjct: 1  MKFLDLFSGVGGFRTGLEAAGH----KCVGFIEFDKFARKSYQAIYDTKDEFTKNDIRTT 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++PD  +   GFPCQ  S AG
Sbjct: 57 KGSELPDAGIWCFGFPCQDISIAG 80


>gi|238923038|ref|YP_002936551.1| DcmB [Eubacterium rectale ATCC 33656]
 gi|238874710|gb|ACR74417.1| DcmB [Eubacterium rectale ATCC 33656]
          Length = 672

 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + I  LF G GG+ L  E            ++E +     T++AN PNT  I GDI ++ 
Sbjct: 1  MNIISLFSGCGGLDLGFESA----GFNIPVANEFDKTIWATFKANHPNTHLIEGDIRQVT 56

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQAG 83
           +DI      + D ++ G PCQ +S+AG
Sbjct: 57 KEDIEQYIDGEIDGIIGGPPCQSWSEAG 84


>gi|329769727|ref|ZP_08261128.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
 gi|328838089|gb|EGF87707.1| hypothetical protein HMPREF0433_00892 [Gemella sanguinis M325]
          Length = 406

 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            +   F G+GGI L  E+T         +++EI+  +  TY+ NFPN  +   DI ++K
Sbjct: 10 YNVAAFFSGVGGIELGFEKTNK---FRVVYANEIDKNARITYKLNFPNVFLDPRDIHEVK 66

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           ++I +   DV++ GFPCQ FS AG
Sbjct: 67 PEEIKEEKLDVIVGGFPCQAFSIAG 91


>gi|327399867|ref|YP_004346898.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
          1112]
 gi|327182537|gb|AEA32972.1| cytosine-specific methyltransferase [Lactobacillus amylovorus GRL
          1112]
          Length = 401

 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 5/81 (6%)

Query: 5  TD-LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
           D  F G+GGI L  +QT         +++E +  + KTY  N P T + G DI  +K+ 
Sbjct: 12 IDAFFAGVGGIELGFKQTGE---FRVVYANEFDKNARKTYAENNPETPLDGRDIHDVKSD 68

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +IPD +V++ GFPCQ FS AG
Sbjct: 69 EIPDSNVIMGGFPCQAFSIAG 89


>gi|254671395|emb|CBA08869.1| hypothetical protein NME_1963 [Neisseria meningitidis alpha153]
 gi|316984659|gb|EFV63623.1| modification methylase NlaIV domain protein [Neisseria
          meningitidis H44/76]
          Length = 86

 Score =  113 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  DLF  + GIR   EQ    ++V  EC F+SEI P +++  + N+P+ + +GDI KI
Sbjct: 4  IKFIDLFSEMSGIRKGFEQACRKQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITKI 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          +T DIPD D+LLAGFPCQ FS A
Sbjct: 64 ETGDIPDFDILLAGFPCQAFSFA 86


>gi|300727022|ref|ZP_07060441.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
          bryantii B14]
 gi|299775566|gb|EFI72157.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Prevotella
          bryantii B14]
          Length = 446

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNT-LIFGDIA 57
          M+   DLF G+GGIR+   Q  N   +E  C F+SEI   ++     NFP   +I  DI 
Sbjct: 1  MIDYIDLFAGLGGIRIGFTQAANELGLESRCVFTSEIKDSALCALNHNFPGENIIKRDIT 60

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          K+ + +IP  ++LL GFPCQ FS AG
Sbjct: 61 KVASDEIPHFNILLGGFPCQAFSFAG 86


>gi|57505223|ref|ZP_00371152.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
          upsaliensis RM3195]
 gi|57016359|gb|EAL53144.1| cytosine specific DNA methyltransferase (BSP6IM) [Campylobacter
          upsaliensis RM3195]
          Length = 326

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          +   D   GIGG RL LE        +C   SEI+  ++KTY+  F   N L  GD+ +I
Sbjct: 1  MTFIDFCSGIGGGRLGLESC----GFKCLGFSEIDRAAIKTYKTFFDTSNELELGDLTQI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q +PD D+L++GFPCQ FS  G
Sbjct: 57 NPQSLPDFDLLISGFPCQSFSIVG 80


>gi|294651999|ref|ZP_06729281.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
          ATCC 19194]
 gi|292822115|gb|EFF81036.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 336

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          LKI  LF G GG+ L  ++          F++E +     TY+ N PNT +    I +IK
Sbjct: 3  LKIVSLFSGAGGLDLGFQKA----GFNITFANEFDKDIWATYEYNHPNTHLDKRSITEIK 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P+ D ++ G PCQ +S+ G
Sbjct: 59 ENEVPECDGIIGGPPCQSWSEGG 81


>gi|229100187|ref|ZP_04231087.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
 gi|228683229|gb|EEL37207.1| hypothetical protein bcere0020_53880 [Bacillus cereus Rock3-29]
          Length = 306

 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          L   DLF G+GG RL +EQ  +     C    E + ++ K+Y+A         + DI+ I
Sbjct: 3  LTFIDLFAGLGGFRLGMEQAGH----RCLGYVEWDKFARKSYEAIHDTGEEWTWNDISTI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++IP  D    GFPCQ  S  G
Sbjct: 59 DYRNIPKSDCWTFGFPCQDISIGG 82


>gi|331090242|ref|ZP_08339130.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330402188|gb|EGG81760.1| hypothetical protein HMPREF1025_02713 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 464

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   DL  GIGG RL LE   +     C    E + ++  +Y+A +         D+ K+
Sbjct: 4  LTFLDLCSGIGGFRLGLESAGH----RCIGYCEYDRFARASYEAMYDTEGEWKADDVTKL 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K++D+P  D+   GFPCQ  S AG
Sbjct: 60 KSEDVPYADIWCFGFPCQDISVAG 83


>gi|321312120|ref|YP_004204407.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
 gi|320018394|gb|ADV93380.1| cytosine-specific methyltransferase [Bacillus subtilis BSn5]
          Length = 380

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI- 59
           K   LF G GG+ +  ++      V+  +++EI+  +  TY+ N P+T L  GDI+++ 
Sbjct: 5  FKAISLFSGAGGMDIGFQKA----GVDVVWANEIDKDACNTYELNNPDTYLRRGDISEVY 60

Query: 60 -KTQDIPDHDVLLAGFPCQPFSQAG 83
           + ++    D+L  G PCQ FS AG
Sbjct: 61 EELKNYNGIDLLFGGPPCQGFSVAG 85


>gi|268610192|ref|ZP_06143919.1| cytosine-specific DNA methylase [Ruminococcus flavefaciens FD-1]
          Length = 475

 Score =  113 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
            +  DLF G+GG      Q   +   EC  ++E N   VKTY+ N+      + GD+ KI
Sbjct: 59  FRFIDLFAGVGGFH----QAMRYLGGECVMAAETNQECVKTYKLNYKIDEKEVRGDVNKI 114

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             + I   DVL AGFPCQPFS+AG
Sbjct: 115 DPETIAPFDVLCAGFPCQPFSKAG 138


>gi|118577457|ref|YP_899696.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118504962|gb|ABL01443.1| DNA-cytosine methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 313

 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIF 53
          M+ +  LF G GG+ L     F+           +  +++E+N  + +TY+ N  + +  
Sbjct: 7  MITVVSLFSGCGGMDLGFSGGFDFLGEHYAKTQFKIIWANELNGAACRTYRKNIGHHIKE 66

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          GDI +   +     D+++ GFPCQ  S  G
Sbjct: 67 GDIWQTMPEMPQSADLVIGGFPCQDISVNG 96


>gi|323127564|gb|ADX24861.1| C-5 cytosine-specific DNA methylase [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 96

 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIP----DHDVLLAGFPCQPFSQAG 83
            QD        D++  GFPCQ FS AG
Sbjct: 57 TDQDFRQLRGQVDIICGGFPCQAFSLAG 84


>gi|269986305|gb|EEZ92611.1| DNA-cytosine methyltransferase [Candidatus Parvarchaeum
          acidiphilum ARMAN-4]
          Length = 349

 Score =  112 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K  +  LF G GG+ L              F+++ +    +TY+ NF + L    I  I
Sbjct: 1  MKCSLISLFSGCGGLDLGFRNA----GFGIVFANDNDKAVWETYEKNFGHKLDGRSIIDI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K++D+PD D ++ G PCQ +S AG
Sbjct: 57 KSEDLPDADGIIGGPPCQSWSLAG 80


>gi|325285907|ref|YP_004261697.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321361|gb|ADY28826.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ GDI    
Sbjct: 75  FKVLELFAGAGGLAVGLEKA----GIKCVALNEIDKWACQTLRENRPHWNVLEGDIKSFN 130

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
             +  +  D++  GFPCQ FS AG
Sbjct: 131 FSEYNNQVDIVTGGFPCQAFSYAG 154


>gi|110643909|ref|YP_671639.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
 gi|110345501|gb|ABG71738.1| putative type II 5-cytosoine methyltransferase [Escherichia coli
          536]
          Length = 305

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F G GG+ L L+Q+     ++  ++++I   +V TY+ N    ++ GDIA I + DIP+ 
Sbjct: 2  FSGAGGLDLGLKQS----GLDIIWANDIYEDAVDTYKRNIGEHIVLGDIANINSSDIPNC 57

Query: 68 DVLLAGFPCQPFSQA 82
          DV++ GFPCQ FS A
Sbjct: 58 DVVVGGFPCQGFSVA 72


>gi|57506146|ref|ZP_00372067.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
 gi|57015541|gb|EAL52334.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
          Length = 316

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG+ L   +       E  F+++I+  + ++Y+ N    ++  DI  +  ++
Sbjct: 1  MISLFSGCGGLDLGFIKA----GFEIVFANDIDKEACESYEKNIGKHILCKDIYTLDMKE 56

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          IP+ D+L+ GFPC  F+ A
Sbjct: 57 IPNADILIGGFPCLGFTIA 75


>gi|329123496|ref|ZP_08252060.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
 gi|327471078|gb|EGF16533.1| modification methylase HaeIII [Haemophilus aegyptius ATCC 11116]
          Length = 133

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L  ++           ++E +    KTY++N    LI GDI+KI +
Sbjct: 21 MNLISLFSGAGGLDLGFQKA----GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISS 76

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           + P  D ++ G PCQ +S+ G
Sbjct: 77 DEFPKCDGIIGGPPCQSWSEGG 98


>gi|313144510|ref|ZP_07806703.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
 gi|313129541|gb|EFR47158.1| cytosine specific DNA methyltransferase [Helicobacter cinaedi
          CCUG 18818]
          Length = 323

 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   D   GIGG RL LE       ++C   SEI+  ++KTY+   N  N L  GD+ +I
Sbjct: 1  MTFIDFCSGIGGGRLGLESC----GLKCLGFSEIDRAAIKTYKTFFNTSNELELGDLTQI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q +PD D+L++GFPCQ FS  G
Sbjct: 57 NPQSLPDFDLLISGFPCQSFSIVG 80


>gi|169823586|ref|YP_001691089.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
 gi|167832206|dbj|BAG09121.1| cytosine-specific methyltransferase [Finegoldia magna ATCC 29328]
          Length = 330

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG+ L   +           ++E +    +TY+ N+   LI  DI  +++
Sbjct: 1  MDLISLFSGAGGLDLGFIKA----GFNVLVANEYDKRIWETYEKNYETRLIKDDITNVRS 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++PD D L+ G PCQ +S+AG
Sbjct: 57 NELPDCDGLIGGPPCQSWSEAG 78


>gi|170718974|ref|YP_001784137.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827103|gb|ACA32474.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 323

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIGG RL LE       +EC   SE++P    TYQ  F +   +GD+ KI  
Sbjct: 7  LKFMDFCSGIGGGRLGLE----LNGMECIAHSELDPNPDLTYQLFFNDKNNYGDLTKINI 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P+ DV+LAGFPCQ FS  G
Sbjct: 63 NDLPEFDVMLAGFPCQTFSIVG 84


>gi|328948537|ref|YP_004365874.1| DNA (cytosine-5-)-methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328448861|gb|AEB14577.1| DNA (cytosine-5-)-methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 129

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++ N PNT LI GDI  IK
Sbjct: 1  MKVISLFSGCGGLDLGFEKA----GFEIPIANEFDSSIWATFEKNHPNTKLIRGDIRNIK 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           +D PD  D ++ G PCQ +S+AG
Sbjct: 57 EEDFPDEIDGIIGGPPCQSWSEAG 80


>gi|224438066|ref|ZP_03659005.1| DNA-cytosine methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 342

 Score =  111 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +   D   GIGG RL LE       ++C   SEI+  ++KTY+   N  N L  GD+ +I
Sbjct: 20 MTFIDFCSGIGGGRLGLESC----GLKCLGFSEIDRAAIKTYKTFFNTSNELELGDLTQI 75

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q +PD D+L++GFPCQ FS  G
Sbjct: 76 NPQSLPDFDLLISGFPCQSFSIVG 99


>gi|329767116|ref|ZP_08258644.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
 gi|328837841|gb|EGF87466.1| hypothetical protein HMPREF0428_00341 [Gemella haemolysans M341]
          Length = 396

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIP 65
           F G+GGI L  E+T         +++EI+  +  TY+ NFP+  +   DI ++K ++I 
Sbjct: 5  FFSGVGGIELGFEKTNK---FRVVYANEIDKNARITYKLNFPDVFLDPRDIHEVKPEEIK 61

Query: 66 D--HDVLLAGFPCQPFSQAG 83
          +   DV++ GFPCQ FS AG
Sbjct: 62 EEKLDVIVGGFPCQAFSIAG 81


>gi|210617281|ref|ZP_03291507.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
 gi|210149385|gb|EEA80394.1| hypothetical protein CLONEX_03729 [Clostridium nexile DSM 1787]
          Length = 455

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
           ++  DLF GIGG R  L +        C    E++ Y+ K Y+  F         D   I
Sbjct: 32  IQFFDLFSGIGGFREGLRRAG---GFTCVGHCEVDTYADKNYRLLFDTEGEWYCSDARTI 88

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           + + +PD D+L AGFPCQ FS AG
Sbjct: 89  EPERMPDFDLLCAGFPCQAFSIAG 112


>gi|160939240|ref|ZP_02086591.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438203|gb|EDP15963.1| hypothetical protein CLOBOL_04134 [Clostridium bolteae ATCC
          BAA-613]
          Length = 366

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
          +   D F GIG  RL LEQ        C    EI+ Y+  +YQA            DI K
Sbjct: 1  MYFLDFFAGIGLFRLGLEQA----GWTCKGHCEIDKYANMSYQAMHHIKEGEWFEEDITK 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  Q +PD D+   GFPCQ  S AG
Sbjct: 57 VSAQSLPDVDLWTGGFPCQDVSMAG 81


>gi|319757808|gb|ADV69750.1| hypothetical protein SSUJS14_0659 [Streptococcus suis JS14]
          Length = 424

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F G+GG R  LE        +C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LSFLDFFAGVGGFRRGLELA----GFKCIGYCEKDKFARKSYEAMYDTKGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTQLPKADLWTAGSPCQNVSIAG 82


>gi|311742739|ref|ZP_07716548.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
          15272]
 gi|311314367|gb|EFQ84275.1| DNA (cytosine-5-)-methyltransferase [Aeromicrobium marinum DSM
          15272]
          Length = 428

 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF GIGG    L +       EC ++SEI+  + K YQ N+ N  + GDI  +  
Sbjct: 8  FTFIDLFAGIGGFHAALSE----LGGECVYASEIDEAAAKIYQHNW-NMPVAGDI--VPE 60

Query: 62 QD----IPDHDVLLAGFPCQPFSQAG 83
           D    +P HDVL AGFPCQPFS++G
Sbjct: 61 TDPVVKVPPHDVLAAGFPCQPFSKSG 86


>gi|109947509|ref|YP_664737.1| methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714730|emb|CAJ99738.1| methylase [Helicobacter acinonychis str. Sheeba]
          Length = 177

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF GIGG     E  F     E  +++E++  +  TY+ANF + L+  DI  +  
Sbjct: 1  MEVGSLFAGIGGF----ECMFLQAGFEIGWANELDKDACNTYRANFKHKLLEQDIKDLNP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++ D  ++ AGFPCQ FS AG
Sbjct: 57 NELEDVGLISAGFPCQAFSIAG 78


>gi|227431785|ref|ZP_03913812.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
 gi|227352468|gb|EEJ42667.1| possible DNA (cytosine-5-)-methyltransferase [Leuconostoc
          mesenteroides subsp. cremoris ATCC 19254]
          Length = 448

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKI 59
          +K  DLF GIGG RL LE++ +          EI+ ++ ++YQA  N        DI K+
Sbjct: 1  MKFLDLFSGIGGFRLGLERSGH----TPVGYVEIDKFARQSYQAMYNTDGEWTAEDINKV 56

Query: 60 KTQDIPDHD----VLLAGFPCQPFSQAG 83
            ++    +    ++  GFPCQ FS AG
Sbjct: 57 TDEEWRKFNGTVELIAGGFPCQSFSIAG 84


>gi|331270911|ref|YP_004385622.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
 gi|329127303|gb|AEB77247.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
          Length = 318

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 8/83 (9%)

Query: 1  MLKITDLFCG--IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          + K  +LF G  +GG+ L      ++   EC   SE++ Y++K Y++NFPN + +GDI K
Sbjct: 3  IFKYLELFAGSGLGGMVL------DNYGGECIGYSEVDKYAIKNYESNFPNKINYGDITK 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQ 81
          I  +++P  D+L+ G PCQ  S 
Sbjct: 57 INEKELPKFDLLIGGSPCQNISI 79


>gi|62390655|ref|YP_226057.1| modification methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324545|dbj|BAB99169.1| Site-specific DNA methylase or type II 5-cytosine
          methyltransferase [Corynebacterium glutamicum ATCC
          13032]
 gi|41325993|emb|CAF20156.1| MODIFICATION METHYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 363

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           I   F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I   
Sbjct: 6  TIVSTFSGCGGLDLGLQE----VGFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPF 61

Query: 62 --QDIPDHDVLLAGFPCQPFSQ 81
              IPD D++  GFPCQ FS 
Sbjct: 62 TDDTIPDGDLVTGGFPCQDFSM 83


>gi|326574028|gb|EGE23977.1| DcmB [Moraxella catarrhalis CO72]
          Length = 337

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +KI  LF G GG+ L  ++       +   ++E +     T++AN  NT LI GDI  I 
Sbjct: 1  MKIISLFSGCGGLDLGFKKA----GFKIAVANEYDKSIWATFKANHHNTKLIEGDIRHIL 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           +D P D D ++ G PCQ +S+AG
Sbjct: 57 EEDFPNDIDGIIGGPPCQSWSEAG 80


>gi|218902126|ref|YP_002449960.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
 gi|218538919|gb|ACK91317.1| cytosine-specific methyltransferase NlaX [Bacillus cereus AH820]
          Length = 350

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           K+  +F GIGG  L  +Q       E  +++E++  +  TY+  +    L   D+ ++ 
Sbjct: 5  YKLGSMFAGIGGTCLGFQQA----GAEIVWANEVDRNASITYRHFWKGEYLQEADVTEVD 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP  D+L+ GFPCQ FS AG
Sbjct: 61 KTTIPQLDILIGGFPCQAFSIAG 83


>gi|218248203|ref|YP_002373574.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060473|ref|YP_003138361.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218168681|gb|ACK67418.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256590639|gb|ACV01526.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 460

 Score =  111 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
               DLF GIGG R+ L         +C   SEI+  ++K YQ NF      +   FGDI
Sbjct: 23  FTFIDLFAGIGGFRIAL----KSLGGKCLGFSEIDKQAIKVYQHNFINYLTSDEREFGDI 78

Query: 57  AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +I   ++P + D+++ G PCQP+S AG
Sbjct: 79  TQIP--NLPQNVDIIVGGVPCQPWSVAG 104


>gi|291543181|emb|CBL16291.1| Site-specific DNA methylase [Ruminococcus bromii L2-63]
          Length = 149

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  D+F GIGG R  LE        EC    EI+ Y+ + Y+A +     L F D  KI
Sbjct: 3  IRYFDMFAGIGGFRSGLEAIG---GFECVGYCEIDKYAKQAYEAMYDTGGELYFDDARKI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +PD D+L+ GFPCQ FS AG
Sbjct: 60 VLEQLPDFDLLVGGFPCQSFSIAG 83


>gi|1808696|gb|AAC00045.1| putative type II 5-cytosoine methyltransferase [Corynebacterium
          glutamicum]
          Length = 363

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           I   F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I   
Sbjct: 6  TIVSTFSGCGGLDLGLQE----VGFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPF 61

Query: 62 --QDIPDHDVLLAGFPCQPFSQ 81
              IPD D++  GFPCQ FS 
Sbjct: 62 TDDTIPDGDLVTGGFPCQDFSM 83


>gi|82752078|ref|YP_417819.1| DNA modification methylase [Staphylococcus aureus RF122]
 gi|82657609|emb|CAI82057.1| DNA modification methylase [Staphylococcus aureus RF122]
          Length = 402

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP 65
           F G+GGI L   QT         +++E +  +  TY+ NF N  L   DI  +KT +IP
Sbjct: 18 FFSGVGGIELGFHQTNK---FRVVYANEFDKNAQITYENNFNNVSLDCRDIHDVKTSEIP 74

Query: 66 DHDVLLAGFPCQPFSQAG 83
            DV++ GFPCQ FS AG
Sbjct: 75 MSDVIVGGFPCQAFSIAG 92


>gi|153854028|ref|ZP_01995361.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
 gi|149753410|gb|EDM63341.1| hypothetical protein DORLON_01352 [Dorea longicatena DSM 13814]
          Length = 468

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
           ++  DLF GIGG R  L +     N  C    E++ Y+ K Y+  F         D   I
Sbjct: 43  IQFFDLFSGIGGFREGLRRAG---NFVCVGHCEVDTYADKNYRLLFDTEGEWYCNDTRTI 99

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           + + +PD D+L AGFPCQ FS AG
Sbjct: 100 EPERMPDFDLLCAGFPCQAFSIAG 123


>gi|325270473|ref|ZP_08137075.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
 gi|324987196|gb|EGC19177.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
          16608]
          Length = 365

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
           K+  LFCG GG  L +   F +          E  ++ + + ++V TY  NF +  +  
Sbjct: 6  YKVASLFCGCGGSDLGIVGGFEYLGKRYDELPFEIAYAVDFDKWAVDTYNKNFRHKAVCA 65

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFS 80
          D+ ++   +  D DVL+ GFPCQ FS
Sbjct: 66 DVTEVDFDETADVDVLIGGFPCQSFS 91


>gi|183983894|ref|YP_001852185.1| phage DNA methylase [Mycobacterium marinum M]
 gi|183177220|gb|ACC42330.1| conserved hypothetical phage DNA methylase [Mycobacterium marinum
          M]
          Length = 291

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L +E  F        +  E +P + K    ++P     GD+ +I  
Sbjct: 4  MRIGSLFSGAGGLDLAVEHIF---GATVAWHCENDPAASKVLAHHWPGVPNLGDVTEIDW 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  G+PCQPFS AG
Sbjct: 61 AQVEPVDILCGGWPCQPFSLAG 82


>gi|291543286|emb|CBL16395.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 369

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKT 61
            DL  GIGG    L  T +     C   +EI+  + K Y A +     L +GD+  I  
Sbjct: 5  FIDLCSGIGGFHSGLVNTGH---YRCVGHAEIDKNAEKAYNAIYGEEGGLNYGDLRTINP 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +++P  D+L  GFPCQ FS AG
Sbjct: 62 RELPHFDLLCGGFPCQSFSVAG 83


>gi|210614083|ref|ZP_03290039.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
 gi|210150861|gb|EEA81869.1| hypothetical protein CLONEX_02252 [Clostridium nexile DSM 1787]
          Length = 244

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDIP 65
          F GIGG R  L +        C    EI+ Y+ ++Y+A F         D  KI+ +++P
Sbjct: 2  FSGIGGFREGLNRAG---GFSCVGHCEIDKYADRSYRAIFNTEGEWFCNDAKKIRPEELP 58

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + D+L  GFPCQ FS AG
Sbjct: 59 EFDLLCGGFPCQAFSVAG 76


>gi|260909972|ref|ZP_05916659.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
          F0295]
 gi|260635922|gb|EEX53925.1| modification methylase EcoRII [Prevotella sp. oral taxon 472 str.
          F0295]
          Length = 370

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
              DLF GIGG    +         +C F+SE +  +  +Y+AN+  +           
Sbjct: 6  FTFIDLFAGIGGFHTAMRS----VGGKCVFASEWDKNARLSYEANYIESEPHLFKKGGNG 61

Query: 54 ------GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 DI      ++P+ D+   GFPCQPFS AG
Sbjct: 62 QYLYFNEDINHAIPSEMPNFDICCGGFPCQPFSVAG 97


>gi|296114087|ref|YP_003628025.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|295921781|gb|ADG62132.1| cytosine-specific methyltransferase [Moraxella catarrhalis RH4]
 gi|326560672|gb|EGE11040.1| cytosine-specific methyltransferase [Moraxella catarrhalis
          46P47B1]
          Length = 318

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
              DLF G+GG    ++        EC F+SE +  + KTY AN    + +GDI     
Sbjct: 4  FTFIDLFAGVGGFHFAMQA----VGGECVFASEWDLNAKKTYFANHG-FVPYGDITLDET 58

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           + IP + DVL AGFPCQ FS AG
Sbjct: 59 KEKIPQNFDVLCAGFPCQAFSVAG 82


>gi|322510834|gb|ADX06148.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 344

 Score =  110 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLFCGIG        +F     +C  S +I+    +TY++N+   L  GDI +I+ 
Sbjct: 69  IKFIDLFCGIGSFHY----SFKKLGWDCVMSCDIDKAVKETYKSNYG-ILPLGDITEIEP 123

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           ++I ++D+L AGFPCQPFSQ G
Sbjct: 124 KNITNYDILCAGFPCQPFSQCG 145


>gi|313123965|ref|YP_004034224.1| modification methylase rho11Si family protein [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
 gi|312280528|gb|ADQ61247.1| Modification methylase Rho11sI family protein [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
          Length = 349

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
          +K  DLF GIGG    LE+  +     C    E + ++ ++YQA +    ++   DI  +
Sbjct: 1  MKFIDLFAGIGGFHTGLEKAGH----TCVGWVEWDKFARQSYQAIYDTDGLYTATDIQDV 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D+PD D+   G PC   S AG
Sbjct: 57 KGVDLPDADLWTFGSPCTDISLAG 80


>gi|91976449|ref|YP_569108.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91682905|gb|ABE39207.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  LF GIGG     E              EI+ +     + ++P T +F DI KI  
Sbjct: 27  LRVASLFAGIGGFDKAFESVSAS----VVAQCEIDSFCRAVLRRHWPQTKLFEDITKINP 82

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            + P  D+  AGFPCQ  S A
Sbjct: 83  AEFPAADIWTAGFPCQDVSLA 103


>gi|20385949|gb|AAM21516.1|AF438205_2 GST-M.SPRX methyltransferase fusion protein [Mutation screening
           vector pSPRX]
          Length = 659

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
           L++  LF GIGG    L         E    SEI+ Y+VK++    N    L FGD++KI
Sbjct: 230 LRVMSLFSGIGGFEAALRNIG--VGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGDVSKI 287

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
             + +P+ D+L+ G PCQ FS AG
Sbjct: 288 DKKKLPEFDILVGGSPCQSFSVAG 311


>gi|291530602|emb|CBK96187.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 369

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKT 61
            DL  GIGG    L  T +     C   +EI+  + K Y A +     L +GD+  I  
Sbjct: 5  FIDLCSGIGGFHSGLVNTGH---YRCVGHAEIDKNAEKAYNAIYGEEGGLNYGDLRTINP 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +++P  D+L  GFPCQ FS AG
Sbjct: 62 RELPHFDLLCGGFPCQSFSVAG 83


>gi|157311261|ref|YP_001469305.1| gp72 [Mycobacterium phage Tweety]
 gi|148540890|gb|ABQ86141.1| gp72 [Mycobacterium phage Tweety]
          Length = 370

 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I  LF G GG+ L +E+ F        +  EI+P + K     +P+   FG +  I  
Sbjct: 1  MRIGSLFSGAGGLDLAVEEVF---GGRTVWHCEIDPAASKVLAHRWPSVPNFGSVTDIDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DVL  GFPCQ  S AG
Sbjct: 58 STVEPVDVLCGGFPCQDLSCAG 79


>gi|228911341|ref|ZP_04075144.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
 gi|228848278|gb|EEM93129.1| Phage-related DNA methylase [Bacillus thuringiensis IBL 200]
          Length = 236

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L   D F G+GG RL +EQ  +     C    E + ++  +Y+   N        DI  I
Sbjct: 3  LTFLDFFSGVGGFRLGMEQAKH----RCIGYVEWDKFARASYEAIHNTEGEWTNHDINNI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          K+  IP  DV   GFPC   S A
Sbjct: 59 KSGTIPKADVWCFGFPCTDISIA 81


>gi|160894995|ref|ZP_02075769.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
 gi|156863426|gb|EDO56857.1| hypothetical protein CLOL250_02545 [Clostridium sp. L2-50]
          Length = 447

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
           ++  DLF GIGG R  L +        C    E + Y+   Y+  F         D   I
Sbjct: 20  IRFFDLFSGIGGFREGLHRAG---GFTCVGHCEADAYADHNYRVLFDTEGEWFCNDARNI 76

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
           +T+ +PD D+L AGFPCQ FS AG
Sbjct: 77  ETERMPDFDLLCAGFPCQAFSIAG 100


>gi|325294602|ref|YP_004281116.1| DNA-cytosine methyltransferase [Desulfurobacterium
          thermolithotrophum DSM 11699]
 gi|325065050|gb|ADY73057.1| DNA-cytosine methyltransferase [Desulfurobacterium
          thermolithotrophum DSM 11699]
          Length = 342

 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          ++I  LF G GG+ L  E           ++++ +    +TY  NFP T L   D+  I 
Sbjct: 1  MEIVSLFSGCGGLDLGFELA----GFSIVWANDNDKDVWETYTRNFPGTYLDKRDLRVIP 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPD   ++ G PCQ +S+AG
Sbjct: 57 VSDIPDCVGIIGGPPCQSWSEAG 79


>gi|261252209|ref|ZP_05944782.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935600|gb|EEX91589.1| DNA-cytosine methyltransferase [Vibrio orientalis CIP 102891]
          Length = 584

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 50/116 (43%), Gaps = 38/116 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLI------ 52
               DLF GIGG+R   E        +C F+SE +  + +TY AN     + L       
Sbjct: 95  FTFIDLFAGIGGLRRGFE----DIGGKCRFTSEWDDKARRTYLANHYVDKDELPYFLDES 150

Query: 53  ---------FGDIAKIKT----------------QDIPDHDVLLAGFPCQPFSQAG 83
                    F DI KI                  + IP+HDVLLAGFPCQPFS AG
Sbjct: 151 TENPMKNRDFMDITKITLSGESSVSEKEKLNHIRKHIPEHDVLLAGFPCQPFSLAG 206


>gi|91201234|emb|CAJ74294.1| similar to site-specific DNA-methyltransferase
          (cytosine-specific) [Candidatus Kuenenia
          stuttgartiensis]
          Length = 313

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          + +  LF G GG+ L     F+           E  +++E++  + +TY+ N    ++ G
Sbjct: 8  ITVVSLFAGCGGMDLGFSGGFDFLGVHYARTQFEIIWANELSGAACRTYRKNIGQHIVEG 67

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI +  ++   + DV++ GFPCQ  S  G
Sbjct: 68 DIWQAISEMPKNADVVIGGFPCQDISVNG 96


>gi|253569226|ref|ZP_04846636.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
 gi|251841245|gb|EES69326.1| cytosine-specific DNA methylase [Bacteroides sp. 1_1_6]
          Length = 448

 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L LE+       +C F+SE+     + Y  N       GDI ++  
Sbjct: 4  YRFIDLFAGLGGFHLALEK----LGCKCVFASELQQELQELYYLNHG-IKCHGDINQVNI 58

Query: 62 -QDIPDHDVLLAGFPCQPFSQAG 83
            DIP HD+L AGFPCQPFS+AG
Sbjct: 59 KNDIPSHDILCAGFPCQPFSKAG 81


>gi|305666023|ref|YP_003862310.1| putative DNA modification methylase [Maribacter sp. HTCC2170]
 gi|88710798|gb|EAR03030.1| putative DNA modification methylase (N.MgoV) [Maribacter sp.
          HTCC2170]
          Length = 493

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
              DLF GIGG RL L++       EC   SEIN  ++  Y  NF +  +   G+I KI
Sbjct: 4  FSFIDLFSGIGGFRLGLQR----NGGECIGFSEINKDAIDFYCENFGDDRSENLGNITKI 59

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +++P HD+L AG PCQ +S AG
Sbjct: 60 --ENLPQHDLLTAGVPCQSWSIAG 81


>gi|153007575|ref|YP_001368790.1| DNA (cytosine-5-)-methyltransferase [Ochrobactrum anthropi ATCC
          49188]
 gi|151559463|gb|ABS12961.1| DNA (cytosine-5-)-methyltransferase [Ochrobactrum anthropi ATCC
          49188]
          Length = 283

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ DLF GIGG  L LE+T      E     EI  +  +    ++P    + D+ ++  
Sbjct: 4  LRVLDLFSGIGGFSLGLERTG---GFETVAFCEIEEFPRRVLAKHWPEVPCYHDVRELTA 60

Query: 62 QDIPD----HDVLLAGFPCQPFSQAG 83
            +       DV+  GFPCQ  S AG
Sbjct: 61 AKLASDGIAIDVICGGFPCQDISTAG 86


>gi|194335797|ref|YP_002017591.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308274|gb|ACF42974.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 434

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           L++ DLF G GG+       F H      ++++ N  + ++Y ANF +    GDI  I  
Sbjct: 35  LRVIDLFAGAGGLSAGFSHFFGHH-FTPVWANDFNSCAAESYNANFGHHCRVGDIVDILD 93

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQ 81
             T  IP  DV++ G PCQ FS 
Sbjct: 94  NPTTIIPKADVVIGGPPCQGFSL 116


>gi|317014507|gb|ADU81943.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          Gambia94/24]
          Length = 318

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLVSGFPCQAFSING 81


>gi|86142380|ref|ZP_01060890.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
          blandensis MED217]
 gi|85831132|gb|EAQ49589.1| putative 5-methylcytosine methyltransferase [Leeuwenhoekiella
          blandensis MED217]
          Length = 332

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          LK  DLF G GG  L      +++  +  FS +I P   +TY  NFP + LI  DI  +K
Sbjct: 5  LKYIDLFSGAGGFSLGF----DNKGFQNVFSVDIEPSFCETYNHNFPSHNLIHKDICDVK 60

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
            ++       + DV++ G PCQ FS AG
Sbjct: 61 DAELKYLKEYDEIDVVIGGPPCQGFSIAG 89


>gi|225375779|ref|ZP_03753000.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans
          DSM 16841]
 gi|225212376|gb|EEG94730.1| hypothetical protein ROSEINA2194_01411 [Roseburia inulinivorans
          DSM 16841]
          Length = 431

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          ++  DLF GIGG R  L +     N  C    E++ Y+ K YQ  F         D   I
Sbjct: 6  IQFFDLFSGIGGFREGLRRAG---NFVCVGHCEVDTYADKNYQLLFDTEGEWYCNDARTI 62

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          + + +PD D+L AGFPCQ FS AG
Sbjct: 63 EPERMPDFDLLCAGFPCQAFSIAG 86


>gi|154497795|ref|ZP_02036173.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
          29799]
 gi|150273293|gb|EDN00438.1| hypothetical protein BACCAP_01773 [Bacteroides capillosus ATCC
          29799]
          Length = 222

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQDI 64
          F GIGG R  L +       +C    EI+ Y+  +Y+A          + D  +I   D+
Sbjct: 2  FAGIGGFRAGLARAG---GFQCVGHCEIDKYADASYRAIHDIREEERYYPDAREIDPGDL 58

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PD D+L  GFPCQ FS AG
Sbjct: 59 PDFDLLCGGFPCQAFSLAG 77


>gi|26554428|ref|NP_758362.1| cytosine-specific DNA methylase [Mycoplasma penetrans HF-2]
 gi|26454438|dbj|BAC44766.1| cytosine-specific DNA methylase [Mycoplasma penetrans HF-2]
          Length = 426

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFP-NTLIFGDIAK 58
          +K  DLF GIGG    LE+     N   EC F SEI+  ++KTY +NF  +     +I  
Sbjct: 4  IKFIDLFAGIGGFHKALERVAKKNNFNIECVFVSEIDNEAIKTYSSNFSVDKEKIINIRD 63

Query: 59 IK--TQDIPDHDVLLAGFPCQPFSQAG 83
          +      +PDHD L AGFPCQ FS AG
Sbjct: 64 LDESASQVPDHDFLFAGFPCQTFSNAG 90


>gi|15612115|ref|NP_223767.1| type II DNA modification (methyltransferase [Helicobacter pylori
          J99]
 gi|4155654|gb|AAD06642.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
          pylori J99]
          Length = 321

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEAIRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLVSGFPCQAFSING 81


>gi|207109252|ref|ZP_03243414.1| putative site-specific DNA-methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 210

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +L   DLF GIGG RL L    +   ++C FS+E NP+++  Y+ANF +     DI  + 
Sbjct: 29  LLTYADLFAGIGGFRLAL----DSLGLKCVFSAENNPHAIAMYKANFNDDSTC-DITILN 83

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
              +P+ D+L AGFPCQ FS  G
Sbjct: 84  PNTMPNFDILCAGFPCQAFSVCG 106


>gi|76788592|ref|YP_329366.1| prophage LambdaSa04, methyltransferase C-5 [Streptococcus
          agalactiae A909]
 gi|76563649|gb|ABA46233.1| prophage LambdaSa04, methyltransferase, C-5 cytosine-specific
          family [Streptococcus agalactiae A909]
          Length = 417

 Score =  109 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   D F G+GG R  LE       + C    E + ++ K+Y+A +         DI  I
Sbjct: 3  LTFLDFFAGVGGFRRGLELA----GMTCLGYCEKDKFARKSYEAMYDTEGEWFHDDITSI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P  D+  AG PCQ  S AG
Sbjct: 59 DPTRLPKADLWTAGSPCQNLSIAG 82


>gi|314940603|ref|ZP_07847734.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313640209|gb|EFS04790.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
          Length = 83

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          ++  DLF GIGG RL +EQ  +H    C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MRFLDLFAGIGGFRLGMEQASHH----CIGFCEIDKFARRSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|317009733|gb|ADU80313.1| type II DNA modification enzyme [Helicobacter pylori India7]
          Length = 318

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLISGFPCQAFSING 81


>gi|163937935|ref|YP_001642821.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
 gi|163865790|gb|ABY46846.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
          Length = 444

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K   LF GIGG     EQ  N +   C  +SE++ Y+   Y+  +    + GDI K+++
Sbjct: 9  FKYVSLFSGIGGF----EQALNGKGGICVMASEVDKYANTAYELIYGKKTV-GDITKVRS 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P HD+L AGFPC  FS AG
Sbjct: 64 MDVPRHDILTAGFPCPTFSVAG 85


>gi|294083958|ref|YP_003550715.1| cytosine-specific methyltransferase [Candidatus Puniceispirillum
          marinum IMCC1322]
 gi|292663530|gb|ADE38631.1| Cytosine-specific methyltransferase [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 407

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI- 59
          MLK  DL  GIGG  L  E        +     + + +  K    ++P+  I  D+ ++ 
Sbjct: 1  MLKHLDLASGIGGFSLGFEWAGLS---QPIMFCDTDEWCRKVLNKHWPDVPIVNDVKELA 57

Query: 60 -KTQDIPDHDVLLAGFPCQPFSQAG 83
           +   IPDHD+L AG+PCQPFS AG
Sbjct: 58 NEPSQIPDHDILSAGYPCQPFSVAG 82


>gi|325298704|ref|YP_004258621.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318257|gb|ADY36148.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 399

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 1  MLKIT-DLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQAN-----F 47
          M KI   LF G GG+ L     F  R         E  F+++ +  +   Y AN      
Sbjct: 1  MPKIIASLFSGCGGLDLGFTGGFTFRGQFYDRLNTEILFANDFDQDAQSCYNANPLLTNN 60

Query: 48 PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              +  DI  I   +IPD D+LLAGFPCQPFS AG
Sbjct: 61 GANCLLADIRDIDANEIPDFDILLAGFPCQPFSNAG 96


>gi|332655061|ref|ZP_08420802.1| modification methylase NgoFVII
          (Cytosine-specificmethyltransferase NgoFVII)
          (M.NgoFVII) (M.NgoVII) [Ruminococcaceae bacterium D16]
 gi|332515921|gb|EGJ45530.1| modification methylase NgoFVII
          (Cytosine-specificmethyltransferase NgoFVII)
          (M.NgoFVII) (M.NgoVII) [Ruminococcaceae bacterium D16]
          Length = 369

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          K+  +F G GG+ L      +       ++++   ++VK+++ANF + + + DI KI   
Sbjct: 12 KVVSIFSGCGGLDLGF----HMEGYNTIWANDFAEWAVKSFRANFGDVIKYEDITKINPY 67

Query: 62 --QDIPDHDVLLAGFPCQPFSQ 81
            + IP+ D++L GFPCQ FS 
Sbjct: 68 EDKSIPECDLVLGGFPCQDFSI 89


>gi|153940750|ref|YP_001392502.1| hypothetical protein CLI_3290 [Clostridium botulinum F str.
          Langeland]
 gi|152936646|gb|ABS42144.1| conserved domain protein [Clostridium botulinum F str. Langeland]
          Length = 338

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
          L   D F G+GG R  +E   +    +C    E + ++  +Y+       +     DI  
Sbjct: 3  LTFIDFFAGVGGFRKGMEMADH----KCVGHCEWDKFANMSYKEIHSPKEDEWFGTDIRN 58

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +K  ++P  D    GFPCQ  S AG
Sbjct: 59 VKATELPRADCWCFGFPCQDISVAG 83


>gi|300867442|ref|ZP_07112096.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
 gi|300334557|emb|CBN57264.1| Modification methylase MthTI [Oscillatoria sp. PCC 6506]
          Length = 350

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQ 62
          I  LF G GG+ L   Q          ++SE +    +TY+ N P+T +   DI  I + 
Sbjct: 9  IVALFSGCGGLDLGFSQA----GFNVIWASEYDKDIWETYENNHPDTFLDKRDIRAISSA 64

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +IPD   ++ G PCQ +S+AG
Sbjct: 65 EIPDCTGIIGGSPCQSWSEAG 85


>gi|56899928|ref|YP_173301.1| phage-related DNA methylase, N-terminal region [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|56800362|gb|AAW31029.1| phage-related DNA methylase, N-terminal region [Bacillus
          thuringiensis serovar konkukian str. 97-27]
          Length = 239

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L   D F GIGG RL +E+  +    +C    E + ++ K+Y+   N        DI  I
Sbjct: 3  LTFIDFFAGIGGFRLGMEEASH----KCIGYVEWDKFARKSYESIHNTRGEWTEHDINNI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
              IP  DV   GFPC   S A
Sbjct: 59 IPGAIPKADVWTFGFPCTDISIA 81


>gi|19552978|ref|NP_600980.1| site-specific DNA methylase or [Corynebacterium glutamicum ATCC
          13032]
          Length = 356

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT---QDI 64
          F G GG+ L L++       +  ++++ +  +V+TY+ N  + ++ GDI +I       I
Sbjct: 4  FSGCGGLDLGLQE----VGFDPIWANDFSEEAVQTYKHNIGDHIVHGDITEIDPFTDDTI 59

Query: 65 PDHDVLLAGFPCQPFSQ 81
          PD D++  GFPCQ FS 
Sbjct: 60 PDGDLVTGGFPCQDFSM 76


>gi|29566487|ref|NP_818053.1| gp80 [Mycobacterium phage Che9d]
 gi|29425212|gb|AAN07998.1| gp80 [Mycobacterium phage Che9d]
          Length = 252

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          + +  LF GIGG+ L LE+      +      EINPY  +    ++P+     D+     
Sbjct: 1  MNVLSLFSGIGGLELGLERA----GMTVVGQVEINPYCRQILAKHWPHVPRHDDVRTTVE 56

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++++ P  D++  GFPCQ  S AG
Sbjct: 57 WWESEERPRVDLICGGFPCQDISNAG 82


>gi|206600250|ref|YP_002241856.1| gp69 [Mycobacterium phage Ramsey]
 gi|206287338|gb|ACI12681.1| gp69 [Mycobacterium phage Ramsey]
          Length = 447

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ + +EQ F        +  E+NP + K     +P     GDI  +  
Sbjct: 1  MKIGSLFSGAGGLDIAVEQFF---GARTVWHCELNPDASKVLAHRWPGVPNLGDITAVDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  GFPCQ  S AG
Sbjct: 58 STVEPVDILAGGFPCQDVSAAG 79


>gi|307637790|gb|ADN80240.1| DNA-cytosine methyl transferase [Helicobacter pylori 908]
 gi|325996388|gb|ADZ51793.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
 gi|325997976|gb|ADZ50184.1| Type II DNA modification enzyme/ methyltransferase [Helicobacter
          pylori 2017]
          Length = 318

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD DVL++GFPCQ FS  G
Sbjct: 59 PNDLPDFDVLVSGFPCQAFSING 81


>gi|78778049|ref|YP_394364.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498589|gb|ABB45129.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 435

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINP-----YSVKTYQANFP-NTLIFG 54
           ++  +LF G+GG RL LE+T   +++    +S++  P     ++   Y A F        
Sbjct: 26  IRTVELFAGVGGFRLGLEKTSLENKSYSVVWSNQWEPSTKTQHASDIYCARFGYENHSND 85

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DI+ +    IPDHD+L+ GFPCQ +S A
Sbjct: 86  DISTVDASVIPDHDLLVGGFPCQDYSVA 113


>gi|157311258|ref|YP_001469302.1| gp69 [Mycobacterium phage Tweety]
 gi|148540887|gb|ABQ86138.1| gp69 [Mycobacterium phage Tweety]
          Length = 261

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G GG+ + +EQ F        +  E+NP + K     +P     GDI  +  
Sbjct: 1  MKIGSLFSGAGGLDIAVEQFF---GARTVWHCELNPAAAKVLAHRWPGVPNLGDITAVDW 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L  GFPCQ  S AG
Sbjct: 58 STVEPVDILAGGFPCQDVSAAG 79


>gi|160893669|ref|ZP_02074453.1| hypothetical protein CLOL250_01223 [Clostridium sp. L2-50]
 gi|156864654|gb|EDO58085.1| hypothetical protein CLOL250_01223 [Clostridium sp. L2-50]
          Length = 573

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+ +  LF GIGG  L       H      ++SEI P+ ++  +  FP+ +  GDI K+ 
Sbjct: 1  MMTLGSLFDGIGGFPL----AAVHCGGVPVWASEIEPFPMRVTKLRFPDMIHVGDITKLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P  DV+  G PCQ  S AG
Sbjct: 57 GAKLPPVDVICGGSPCQDLSVAG 79


>gi|289422787|ref|ZP_06424624.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
 gi|289156786|gb|EFD05414.1| DNA (cytosine-5-)-methyltransferase [Peptostreptococcus
          anaerobius 653-L]
          Length = 536

 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G GG+ L   QT   +  +   + E NP   +TY+ N P   +FGD+    
Sbjct: 1  MFNTIDLFAGAGGLSLGFMQT---KKFDIKVAYEFNPSMQETYKKNHPGVAVFGDVRDAN 57

Query: 61 TQDIP----DHDVLLAGFPCQPFSQA 82
            +I     D DV++ G PCQ FS A
Sbjct: 58 YAEIKEKYGDIDVVIGGPPCQGFSNA 83


>gi|303231468|ref|ZP_07318199.1| modification methylase HhaI family protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302513905|gb|EFL55916.1| modification methylase HhaI family protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 411

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            I   F G+GGI L  EQT         +++E +  +  TY+ NFP+  L   DI  + 
Sbjct: 9  YTIAAFFSGVGGIELGFEQTNK---FRVVYANEFDKNANITYKLNFPDIQLDNRDIHIVS 65

Query: 61 TQDI--PDHDVLLAGFPCQPFSQAG 83
          + DI     DV++ GFPCQ FS AG
Sbjct: 66 SSDIKTEKIDVIVGGFPCQAFSIAG 90


>gi|309389435|gb|ADO77315.1| DNA-cytosine methyltransferase [Halanaerobium praevalens DSM
          2228]
          Length = 328

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          ML   DLF G GG+    E+       E  FS E NP   +TY+ NFP N LI  DIA I
Sbjct: 1  MLNYIDLFSGAGGMSCGFEKA----GFENIFSLEFNPEFAETYKKNFPKNNLIVKDIADI 56

Query: 60 KTQDIP------DHDVLLAGFPCQPFSQAG 83
             ++       D DV++ G PCQ FS AG
Sbjct: 57 SEPEVKKIIGETDVDVIVGGPPCQGFSLAG 86


>gi|166368611|ref|YP_001660884.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166090984|dbj|BAG05692.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 464

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
            +  DLF GIGG R+ LE+        C   SEI+  +++ YQ NF      N + FGD+
Sbjct: 32  YRFIDLFAGIGGFRIALEK----LGGRCLGYSEIDKQAIQVYQQNFISYLNSNEIAFGDV 87

Query: 57  AKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +KI   ++PD+ D ++ G PCQP+S AG
Sbjct: 88  SKI--SNLPDNLDFIVGGVPCQPWSVAG 113


>gi|281424544|ref|ZP_06255457.1| modification methylase NgoFVII [Prevotella oris F0302]
 gi|281401381|gb|EFB32212.1| modification methylase NgoFVII [Prevotella oris F0302]
          Length = 131

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  LF G GG+ L  EQ  +    +  ++++    + +T++ +F + ++ GDI +I  
Sbjct: 6  IRVVSLFSGCGGLDLGFEQVGD---YKTLWANDFKHEACQTFRRHFGDIIVEGDIEQIDP 62

Query: 62 QD---IPDHDVLLAGFPCQPFSQ 81
           +   +PD D++L GFPCQ FS 
Sbjct: 63 YNNFSVPDCDLVLGGFPCQDFSI 85


>gi|315657354|ref|ZP_07910236.1| modification methylase NgoPII [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315491826|gb|EFU81435.1| modification methylase NgoPII [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 355

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + +  LF G GG+ L  EQ           ++E +P   +T++AN P+T  I GDI  + 
Sbjct: 1  MNVISLFSGCGGLDLGFEQA----GFNIPVANEFDPTIYETFKANHPHTHLIEGDIRGVT 56

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQAG 83
           +DI      + D ++ G PCQ +S+AG
Sbjct: 57 IEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|304390097|ref|ZP_07372051.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326579|gb|EFL93823.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 355

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + +  LF G GG+ L  EQ           ++E +P   +T++AN P+T  I GDI  + 
Sbjct: 1  MNVISLFSGCGGLDLGFEQA----GFNIPVANEFDPTIYETFKANHPHTHLIEGDIRGVT 56

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQAG 83
           +DI      + D ++ G PCQ +S+AG
Sbjct: 57 IEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|308183225|ref|YP_003927352.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
 gi|308065410|gb|ADO07302.1| type II DNA modification enzyme [Helicobacter pylori PeCan4]
          Length = 318

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINDEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLVSGFPCQAFSING 81


>gi|298346143|ref|YP_003718830.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          43063]
 gi|298236204|gb|ADI67336.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          43063]
          Length = 355

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + +  LF G GG+ L  EQ           ++E +P   +T++AN P+T  I GDI  + 
Sbjct: 1  MNVISLFSGCGGLDLGFEQA----GFNIPVANEFDPTIYETFKANHPHTHLIEGDIRGVT 56

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQAG 83
           +DI      + D ++ G PCQ +S+AG
Sbjct: 57 IEDIAPFVDGEVDGIIGGPPCQSWSEAG 84


>gi|167751790|ref|ZP_02423917.1| hypothetical protein ALIPUT_00030 [Alistipes putredinis DSM
          17216]
 gi|167660688|gb|EDS04818.1| hypothetical protein ALIPUT_00030 [Alistipes putredinis DSM
          17216]
          Length = 318

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF GIGG  L  E         C    EI+P+  K  + +FPN   + DI     
Sbjct: 1  MTHASLFSGIGGFDLAAEWAGWTNAFNC----EIDPFCRKVLKYHFPNAEQYEDIRTTDF 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
              D  DVL  GFPCQPFS AG
Sbjct: 57 TVWKDRIDVLTGGFPCQPFSLAG 79


>gi|163938820|ref|YP_001643704.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
 gi|163861017|gb|ABY42076.1| DNA-cytosine methyltransferase [Bacillus weihenstephanensis
          KBAB4]
          Length = 350

 Score =  107 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           K+  +F GIGG  L  +Q       E  +++E++  +  TY+  +    L   D+ ++ 
Sbjct: 5  YKLGSMFAGIGGTCLGFQQA----GAEIVWANEVDRNASITYRHFWKGEYLQEADVTEVD 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             I   D+L+ GFPCQ FS AG
Sbjct: 61 KTTISQLDILIGGFPCQAFSIAG 83


>gi|240118874|ref|ZP_04732936.1| DcmB [Neisseria gonorrhoeae PID1]
          Length = 325

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIP- 65
          F G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK +D P 
Sbjct: 2  FSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIKEEDFPE 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + D ++ G PCQ +S+AG
Sbjct: 58 EIDGIIGGPPCQSWSEAG 75


>gi|240081638|ref|ZP_04726181.1| DcmB [Neisseria gonorrhoeae FA19]
 gi|240113919|ref|ZP_04728409.1| DcmB [Neisseria gonorrhoeae MS11]
 gi|240116652|ref|ZP_04730714.1| DcmB [Neisseria gonorrhoeae PID18]
 gi|240129088|ref|ZP_04741749.1| DcmB [Neisseria gonorrhoeae SK-93-1035]
          Length = 325

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIP- 65
          F G GG+ L  E+       E   ++E +     T++AN P   LI GDI KIK +D P 
Sbjct: 2  FSGCGGLDLGFEKA----GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIKEEDFPE 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + D ++ G PCQ +S+AG
Sbjct: 58 EIDGIIGGPPCQSWSEAG 75


>gi|317011319|gb|ADU85066.1| type II DNA modification enzyme [Helicobacter pylori
          SouthAfrica7]
          Length = 321

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINDEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+P+ DVL++GFPCQ FS  G
Sbjct: 59 PNDLPNFDVLISGFPCQAFSING 81


>gi|291568714|dbj|BAI90986.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 406

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L   +       E  ++ + N  + +T++ N   T+   +I +I   
Sbjct: 17 KLVSLFSGCGGMDLPFHRA----GFEVVWAIDCNGAACRTFRRNISETIACNNIQEIDIT 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  D++  GFPCQ FS  G
Sbjct: 73 KVPKADLITGGFPCQDFSMIG 93


>gi|159026722|emb|CAO89036.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 455

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
            +  DLF GIGG R+ LE+        C   SEI+  +++ YQ NF      + + FGD+
Sbjct: 24  YRFVDLFAGIGGFRIALEK----LGGRCLGYSEIDKQAIQVYQQNFISYLNSDEIAFGDV 79

Query: 57  AKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           +KI   ++PD+ D+++ G PCQP+S AG
Sbjct: 80  SKI--SNLPDNLDLIVGGVPCQPWSVAG 105


>gi|308235652|ref|ZP_07666389.1| DcmB [Gardnerella vaginalis ATCC 14018]
 gi|311115197|ref|YP_003986418.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
          14019]
 gi|310946691|gb|ADP39395.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis ATCC
          14019]
          Length = 333

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +K+  LF G GG+ L  E+       E   ++E +     T++ N P   LI GD+ K+ 
Sbjct: 1  MKVLSLFSGCGGLDLGFEKA----GFEIPVANEFDKTIWDTFKINHPKTHLIEGDVRKVS 56

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQAG 83
            DI ++     D ++ G PCQ +S+AG
Sbjct: 57 KNDISEYLSGNLDGIIGGPPCQSWSEAG 84


>gi|325860528|ref|ZP_08173633.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
 gi|325481968|gb|EGC84996.1| modification methylase HaeIII [Prevotella denticola CRIS 18C-A]
          Length = 403

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 13/95 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQAN---FPNTL 51
          +KI  LF G GG+ L     F+           E  F+++ +  +   Y +N     N  
Sbjct: 5  IKIASLFSGCGGLDLGFIGGFDFMGKSYPKLPTEIVFANDFDTDAATCYNSNSLLTKNNH 64

Query: 52 ---IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             +  DI  +  ++IPD+D+LLAGFPCQPFS AG
Sbjct: 65 AKCLLRDIRSVNVEEIPDYDILLAGFPCQPFSNAG 99


>gi|284050655|ref|ZP_06380865.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835464|gb|ABB52092.1| Mod [Arthrospira platensis]
          Length = 406

 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L   +       E  ++ + N  + +T++ N   T+   +I +I   
Sbjct: 17 KLVSLFSGCGGMDLPFHRA----GFEVVWAIDCNGAACRTFRRNISETIACNNIQEIDIT 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  D++  GFPCQ FS  G
Sbjct: 73 KVPKADLITGGFPCQDFSMIG 93


>gi|300124212|gb|ADJ68008.1| M.BanII [Aneurinibacillus aneurinilyticus]
          Length = 385

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI--KT 61
            LF G GG+ +  +       V+   ++EI+ Y+  TYQAN P T    GDI  +  + 
Sbjct: 8  ISLFSGAGGMDVGFKNA----GVKVLCANEIDKYASATYQANNPETKFKLGDIRDVYSEL 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++  + D++  G PCQ FS AG
Sbjct: 64 KEFKNIDIIFGGPPCQGFSVAG 85


>gi|109947738|ref|YP_664966.1| site-specific DNA methyltransferase [Helicobacter acinonychis
          str. Sheeba]
 gi|109714959|emb|CAJ99967.1| site-specific DNA methyltransferase [Helicobacter acinonychis
          str. Sheeba]
          Length = 327

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  EQ       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEQA----GFKIVIANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TNEINFSVDGIIGGPPCQSWSEAG 80


>gi|167837977|ref|ZP_02464836.1| modification methylase HaeII [Burkholderia thailandensis MSMB43]
          Length = 111

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  DLF G+GG  L L++        C +++E   +    Y+ NF      GDI  I  
Sbjct: 4  FRFVDLFAGLGGFHLALQR----LGGTCVYAAEWQEHLRDLYEVNFGLRP-EGDITLISP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +D+P HDVL AGFPCQPFS+AG
Sbjct: 59 KDVPSHDVLTAGFPCQPFSKAG 80


>gi|157265308|ref|YP_001467867.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|157265426|ref|YP_001467984.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
 gi|156905203|gb|ABU96847.1| C5 cytosine-specific DNA methylase [Thermus phage P23-45]
 gi|156905321|gb|ABU96964.1| C5 cytosine-specific DNA methylase [Thermus phage P74-26]
          Length = 368

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNH-------RNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
           +  LF G GG+ L     F            +   + + N  +V TY AN        D
Sbjct: 9  TVLSLFSGAGGMDLGFTGGFTFLGKTYPRTGFKVVKAYDNNRRAVDTYNANLDPVAELKD 68

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  ++  +IP  DV++ GFPCQ FS AG
Sbjct: 69 VTTLQDHEIPSVDVVIGGFPCQDFSLAG 96


>gi|1171045|sp|P09915|MTBR_BPRH1 RecName: Full=Modification methylase Rho11sI; Short=M.Rho11sI;
          AltName: Full=Bsu P11s; AltName: Full=Cytosine-specific
          methyltransferase Rho11sI
 gi|579194|emb|CAA28869.1| unnamed protein product [Bacillus phage rho11s]
          Length = 503

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          L++  LF GIG      E    +     E    SEI+ Y++K+Y A       L FGD++
Sbjct: 4  LRVMSLFSGIG----AFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNADEQLNFGDVS 59

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 60 KIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|283797105|ref|ZP_06346258.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075522|gb|EFE12886.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 535

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +  LF GIGG  L       H  +   ++SEI P+ ++  +  FP+    GDI K+ 
Sbjct: 1  MLTLGSLFDGIGGFPL----AGIHNGITPLWASEIEPFPIQVTKLRFPDMEHVGDITKLD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P  DV+  G PCQ  S AG
Sbjct: 57 GGKLPPVDVICGGSPCQDLSVAG 79


>gi|317012898|gb|ADU83506.1| type II DNA modification enzyme [Helicobacter pylori Lithuania75]
          Length = 318

 Score =  107 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|314998281|ref|ZP_07863147.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a01]
 gi|313587745|gb|EFR66590.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecium
          TX0133a01]
          Length = 171

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|317177871|dbj|BAJ55660.1| Type II DNA modification enzyme [Helicobacter pylori F16]
          Length = 319

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|218249004|ref|YP_002374375.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218169482|gb|ACK68219.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 456

 Score =  107 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
               DLF GIGG R+ LEQ       +C   SEI+  ++K Y+ NF      +    GDI
Sbjct: 28  FTFIDLFSGIGGFRIPLEQ----LGGKCLGYSEIDTEAIKVYRRNFIRYSNRDETYLGDI 83

Query: 57  AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            ++    IP   DV++ G PCQP+S AG
Sbjct: 84  TQLN--QIPFKVDVIVGGVPCQPWSIAG 109


>gi|126660265|ref|ZP_01731380.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
 gi|126618440|gb|EAZ89194.1| putative DNA modification methylase (N.MgoV) [Cyanothece sp.
           CCY0110]
          Length = 458

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
               D F GIGG R+ LE+       +C   SEI+  ++K YQ NF        L  GDI
Sbjct: 28  FTFIDFFAGIGGFRIPLEK----LGGKCLGYSEIDKEAIKVYQQNFISYYNSEELNLGDI 83

Query: 57  AKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +KI +  +P   D+ + G PCQP+S AG
Sbjct: 84  SKINS--LPKNVDLFVGGVPCQPWSVAG 109


>gi|323693327|ref|ZP_08107545.1| hypothetical protein HMPREF9475_02408 [Clostridium symbiosum
          WAL-14673]
 gi|323502810|gb|EGB18654.1| hypothetical protein HMPREF9475_02408 [Clostridium symbiosum
          WAL-14673]
          Length = 536

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M    DLF G GG+ L   QT   +  +   + E NP   +TY+ N P   +FGD+    
Sbjct: 1  MFNTIDLFAGAGGLSLGFMQT---KKFDIKVAYEFNPAMQETYKKNHPGVAVFGDVRDAN 57

Query: 61 TQDIPD----HDVLLAGFPCQPFSQA 82
            +I +     DV++ G PCQ FS A
Sbjct: 58 YAEIKEKYGNIDVVIGGPPCQGFSNA 83


>gi|315446158|ref|YP_004079037.1| DNA-methyltransferase Dcm [Mycobacterium sp. Spyr1]
 gi|315264461|gb|ADU01203.1| DNA-methyltransferase Dcm [Mycobacterium sp. Spyr1]
          Length = 365

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          LK+ DLF G GG+          +  +  FS E+N ++  TY ANF  + + +GDI +  
Sbjct: 5  LKLIDLFAGCGGMTAGF----KPQGFDPVFSVELNLHAAATYAANFGEDHIFWGDIDEAL 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P+ DV++ G PCQ FS  G
Sbjct: 61 KGEVPEADVVIGGPPCQGFSNLG 83


>gi|295103751|emb|CBL01295.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 412

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN--TLIFG 54
          +++ +LF G+GG RL LEQ  +    +  ++++  P     ++ + Y+ +F +    +  
Sbjct: 4  IRVVELFAGVGGFRLGLEQASSC--FQTVWANQWEPSMRSQFAFECYERHFGHRPEHVCQ 61

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DI   K   IP HD+L+ GFPCQ +S A
Sbjct: 62 DIVTAKGN-IPPHDLLVGGFPCQDYSIA 88


>gi|288801979|ref|ZP_06407420.1| modification methylase HaeIII (Cytosine-specific
          methyltransferase HaeIII) [Prevotella melaninogenica
          D18]
 gi|288335414|gb|EFC73848.1| modification methylase HaeIII (Cytosine-specific
          methyltransferase HaeIII) [Prevotella melaninogenica
          D18]
          Length = 336

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+                 ++E +     T++ANFP+T LI GDI  I 
Sbjct: 1  MRLISLFSGAGGLDKGFHNA----GFRTIVANEFDKKICPTFRANFPDTKLIEGDIHDIP 56

Query: 61 TQDIPDHDV-LLAGFPCQPFSQAG 83
          +   P + V ++ G PCQ +S+AG
Sbjct: 57 SDAFPMNPVGIIGGPPCQSWSEAG 80


>gi|257062089|ref|YP_003139977.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256592255|gb|ACV03142.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 456

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
               DLF GIGG R+ LEQ       +C   SEI+  ++K Y+ NF      +    GDI
Sbjct: 28  FTFIDLFSGIGGFRIPLEQ----LGGKCLGYSEIDTEAIKVYRRNFIRYSNRDETYLGDI 83

Query: 57  AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            ++    IP   DV++ G PCQP+S AG
Sbjct: 84  TQLN--QIPFKVDVIVGGVPCQPWSIAG 109


>gi|261364680|ref|ZP_05977563.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
 gi|288566964|gb|EFC88524.1| modification methylase Eco47II [Neisseria mucosa ATCC 25996]
          Length = 419

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 6/85 (7%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           + K+ +LF G GG+ + +EQ       E    +EI+  + KT + N PN  ++ GDIAK+
Sbjct: 75  LYKLLELFAGAGGLAIGMEQA----GFESVLLNEIDAAACKTLRKNRPNWNVVEGDIAKL 130

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
                 D  D+L  GFPCQ FS AG
Sbjct: 131 DFTPYRDQIDILSGGFPCQAFSYAG 155


>gi|317182374|dbj|BAJ60158.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 318

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQCR----LKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|2599488|gb|AAB84141.1| FauI DNA methyltransferase [Flavobacterium aquatile]
          Length = 343

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLD-------LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          LK+  LFCG GG+ +        L++ ++    +  ++ + + Y+ K Y  NF +     
Sbjct: 10 LKVASLFCGCGGMDVGIQGDFKFLKKHYDTLPFKVVYAVDNDAYATKIYNDNFAHKCETK 69

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          D+  I   ++PDHD+LL GFPCQ FS 
Sbjct: 70 DVRDIVPSEVPDHDILLGGFPCQSFSI 96


>gi|80159730|ref|YP_398474.1| putative DNA methylase [Clostridium phage c-st]
 gi|78675320|dbj|BAE47742.1| putative DNA methylase [Clostridium phage c-st]
          Length = 370

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
          +K  D F G G  R  +E   +    EC    EI   + +TY+ N+  T    F D+A++
Sbjct: 1  MKFIDFFSGAGMFRKGMEDAGH----ECIGYVEIQKQARETYETNYDTTKEWTFHDVAQL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
          K +DIP+ D+   GFPC+  S A
Sbjct: 57 KAEDIPNADIWCFGFPCKNMSTA 79


>gi|254285523|ref|ZP_04960487.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
 gi|150424385|gb|EDN16322.1| modification methylase Eco47II [Vibrio cholerae AM-19226]
          Length = 417

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ + +EQ      ++    +E++ ++  T + N P+  +I GDIAK+ 
Sbjct: 78  YKLVELFAGGGGLAIGMEQA----GLKSILLNEMDKHACNTLRHNRPDWNVIEGDIAKVD 133

Query: 61  TQDI-PDHDVLLAGFPCQPFSQAG 83
              I  + DVL  GFPCQ FS AG
Sbjct: 134 FTQIKEEVDVLTGGFPCQAFSYAG 157


>gi|261838450|gb|ACX98216.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 318

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|322510825|gb|ADX06139.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 390

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           K  DLFCG+G       +    +N     C  +S+IN    K Y+ N+      GDI KI
Sbjct: 80  KYIDLFCGLGAFHTAFNRNNILQNEVKYTCVLASDINECVRKIYEENYG-IKPEGDINKI 138

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
               +PD D+L AGFPCQPFS AG
Sbjct: 139 NIDTMPDFDILCAGFPCQPFSIAG 162


>gi|317180612|dbj|BAJ58398.1| Type II modification enzyme [Helicobacter pylori F32]
          Length = 327

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|317504402|ref|ZP_07962385.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
 gi|315664482|gb|EFV04166.1| modification methylase Sau3AI [Prevotella salivae DSM 15606]
          Length = 579

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ +LF G+GG R+ LE   +    E  ++++  P      +   Y+A F +      D
Sbjct: 9  IKVVELFAGVGGFRIGLEGASDD--YETIWNNQWEPSTIHQDASLVYRARFGSKGHCNED 66

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  + T +IP+HD+L+ GFPCQ +S A
Sbjct: 67 INNVDTANIPNHDLLVGGFPCQDYSVA 93


>gi|313201769|ref|YP_004040427.1| modification methylase [Methylovorus sp. MP688]
 gi|312441085|gb|ADQ85191.1| putative modification methylase [Methylovorus sp. MP688]
          Length = 378

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  +LF GIGG RL      +++N+   F+++I   +   Y + F  +++  GDI    
Sbjct: 1  MKAVELFSGIGGFRL----ACDNKNIRTVFANDIKTLACDVYASQFGTSVLHRGDIKDF- 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IPDHD+L AGFPCQPFS AG
Sbjct: 56 FDKIPDHDLLTAGFPCQPFSSAG 78


>gi|148988377|ref|ZP_01819824.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926058|gb|EDK77132.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
          Length = 343

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +     F+          +E  ++++I   + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLGKHYADNQIEIVYANDIEDSANKMFEKNFGVTPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          +I +IK+ +IP  D+L  GFPCQ FS 
Sbjct: 64 NIREIKSDEIPSFDILTGGFPCQSFSV 90


>gi|289167787|ref|YP_003446056.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907354|emb|CBJ22191.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 346

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +     F+          +E  ++++I   + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLGKHYADNQIEIVYANDIEDSANKMFEKNFGVTPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          +I +IK+ +IP  D+L  GFPCQ FS 
Sbjct: 64 NIREIKSDEIPSFDILTGGFPCQSFSV 90


>gi|308184861|ref|YP_003928994.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060781|gb|ADO02677.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 318

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  ++KTY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALKTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALVSGFPCQAFSING 81


>gi|254228592|ref|ZP_04922017.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262392607|ref|YP_003284461.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
 gi|151938974|gb|EDN57807.1| Site-specific DNA methylase [Vibrio sp. Ex25]
 gi|262336201|gb|ACY49996.1| DNA-cytosine methyltransferase [Vibrio sp. Ex25]
          Length = 427

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L     F GIGG  L  E    ++  E  F  E+N +     + ++    + GDI+ +  
Sbjct: 8  LNFNSFFAGIGGFDLAFE----NQGFEPSFQCELNAFCQSVLKKHWGRVPLHGDISNLDA 63

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           +IP   V   GFPCQ  S A
Sbjct: 64 SEIPKATVWCGGFPCQDLSVA 84


>gi|308062397|gb|ADO04285.1| type II DNA modification enzyme [Helicobacter pylori Cuz20]
          Length = 318

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQCR----LKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|146298415|ref|YP_001193006.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152833|gb|ABQ03687.1| DNA-cytosine methyltransferase [Flavobacterium johnsoniae UW101]
          Length = 329

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  L+ G+GGI L  ++       E  +++E +  +  TY+ NF + LI GD+  +   
Sbjct: 4  TVGSLYAGVGGICLGFKKA----GFELEWANEFDKNACITYKNNFEHNLIEGDVMALDVT 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +   ++L AGFPCQPFS AG
Sbjct: 60 SLKKINILTAGFPCQPFSVAG 80


>gi|188527304|ref|YP_001909991.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
 gi|188143544|gb|ACD47961.1| site-specific DNA methyltransferase [Helicobacter pylori Shi470]
          Length = 327

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTRLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|291525029|emb|CBK90616.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 337

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +  +        E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGIAFKNA----GYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|217033005|ref|ZP_03438476.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298736554|ref|YP_003729080.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945262|gb|EEC23940.1| hypothetical protein HPB128_151g1 [Helicobacter pylori B128]
 gi|298355744|emb|CBI66616.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 327

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|217034513|ref|ZP_03439924.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
 gi|216943054|gb|EEC22533.1| hypothetical protein HP9810_873g29 [Helicobacter pylori 98-10]
          Length = 327

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|315586485|gb|ADU40866.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori 35A]
 gi|317178791|dbj|BAJ56579.1| Type II modification enzyme [Helicobacter pylori F30]
          Length = 327

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|317178577|dbj|BAJ56365.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 318

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQCR----LKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|308063355|gb|ADO05242.1| site-specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 327

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L  E+       +   ++E +     TY+ N  NT L+  DI  ++
Sbjct: 1  MNLLSLFAGAGGLDLGFEKA----GFKIVVANEYDKNITPTYRLNHKNTQLLEKDIKNLQ 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T +I    D ++ G PCQ +S+AG
Sbjct: 57 TSEINFSVDGIIGGPPCQSWSEAG 80


>gi|229824483|ref|ZP_04450552.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC
          51271]
 gi|229786084|gb|EEP22198.1| hypothetical protein GCWU000282_01806 [Catonella morbi ATCC
          51271]
          Length = 406

 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            I   F G+GGI L  EQT         +++E +  +  TY  N+P+T +   DI ++ 
Sbjct: 12 YNIAAFFSGVGGIELGFEQTGK---FHTVYANEFDANARTTYALNYPDTFLDPRDIHEVS 68

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
            +I +  D+++ GFPCQ FS AG
Sbjct: 69 PDEIGEQVDLVVGGFPCQAFSIAG 92


>gi|319778406|ref|YP_004129319.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis
          MCE9]
 gi|317108430|gb|ADU91176.1| DNA (cytosine-5-)-methyltransferase [Taylorella equigenitalis
          MCE9]
          Length = 160

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIPD 66
          F GIG IRL  EQ F ++ ++  + SEI+  +VKTY +NF  N LI GD+ K    DIP 
Sbjct: 2  FAGIGCIRLGFEQAFGNK-LKTVYVSEIDSNAVKTYTSNFSSNKLIHGDVTKEVESDIPP 60

Query: 67 HDVLLAGFPCQPFSQAG 83
          HD LLAGFPC  FS AG
Sbjct: 61 HDFLLAGFPCHAFSAAG 77


>gi|239625877|ref|ZP_04668908.1| methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520107|gb|EEQ59973.1| methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 338

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +  +        E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGIAFKNA----GYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|208435018|ref|YP_002266684.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432947|gb|ACI27818.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 318

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALVSGFPCQAFSING 81


>gi|313675860|ref|YP_004053856.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942558|gb|ADR21748.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 412

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ GDI     +
Sbjct: 76  VLELFAGAGGLAVGLEKA----GLKCQALNEIDKWACQTLRNNRPHWNVLEGDIKDFDFK 131

Query: 63  DIPD-HDVLLAGFPCQPFSQAG 83
           ++ +  DV+  GFPCQ FS AG
Sbjct: 132 ELENQIDVVTGGFPCQAFSYAG 153


>gi|255022454|ref|ZP_05294440.1| hypothetical protein LmonocyFSL_01025 [Listeria monocytogenes FSL
          J1-208]
          Length = 150

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIK 60
             DLF G+GG RL +E   +    +C    EI+ Y+  +Y A       F   DI  I 
Sbjct: 12 TFVDLFAGVGGFRLGMEAAGH----KCVGYVEIDKYARTSYTAIHQTEGEFEGHDITSIS 67

Query: 61 TQ---DIPDHDVLLAGFPCQPFSQAG 83
                I   D++  GFPCQ FS AG
Sbjct: 68 DDVIRSIGRVDIITGGFPCQAFSIAG 93


>gi|325678044|ref|ZP_08157681.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus
          8]
 gi|324110261|gb|EGC04440.1| putative DNA (cytosine-5-)-methyltransferase [Ruminococcus albus
          8]
          Length = 324

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFP-NTLI 52
          M  +  LFCG GG  +     F            +  FS +I+  ++ TY+ANF  + +I
Sbjct: 1  MYNVVSLFCGCGGADMGTVGGFVFNKKKYKKHPCKLVFSCDIDQKAIDTYKANFNSDEVI 60

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
           GD+  + ++++P  D+L  GFPCQ FS
Sbjct: 61 CGDVCDLPSENVPPCDILTGGFPCQSFS 88


>gi|57116673|gb|AAW33810.1| M.HinP1I methyltransferase [Haemophilus influenzae]
          Length = 322

 Score =  106 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIGG RL LE       +EC   SE++    KTY+  F ++   GD+ ++  
Sbjct: 4  LKFIDFCAGIGGGRLGLE----LNGMECIAHSEVDLNPAKTYEIFFNDSRNLGDLTQLAP 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +PD D+++AGFPCQ FS  G
Sbjct: 60 KSLPDFDLMIAGFPCQTFSIIG 81


>gi|216171|gb|AAA32604.1| DNA methyltransferase [Bacillus phage SPR]
          Length = 439

 Score =  106 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L++  LF GIG     L         E    SEI+ Y+VK++    N    L FGD++KI
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGDVSKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +P+ D+L+ G PCQ FS AG
Sbjct: 62 DKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|127431|sp|P00476|MTBS_BPSPR RecName: Full=Modification methylase SPRI; Short=M.SPRI; AltName:
          Full=Cytosine-specific methyltransferase SPRI
 gi|224091|prf||1010250A methyltransferase
          Length = 439

 Score =  106 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          L++  LF GIG     L         E    SEI+ Y+VK++    N    L FGD++KI
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGDVSKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +P+ D+L+ G PCQ FS AG
Sbjct: 62 DKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|16077674|ref|NP_388488.1| DNA-methyltransferase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221308443|ref|ZP_03590290.1| hypothetical protein Bsubs1_03408 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221312765|ref|ZP_03594570.1| hypothetical protein BsubsN3_03384 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221317688|ref|ZP_03598982.1| hypothetical protein BsubsJ_03343 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221321964|ref|ZP_03603258.1| hypothetical protein BsubsS_03414 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81669152|sp|O34680|YDIP_BACSU RecName: Full=Probable BsuMI modification methylase subunit ydiP;
          Short=M2.BsuMI; AltName: Full=Cytosine-specific
          methyltransferase M2.BsuMI
 gi|2521998|dbj|BAA22751.1| ydiP [Bacillus subtilis]
 gi|2632920|emb|CAB12426.1| DNA-methyltransferase (cytosine-specific) [Bacillus subtilis
          subsp. subtilis str. 168]
          Length = 389

 Score =  106 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIGGI L L Q+ +   +      E++P +      NFP   I  DI +I+ 
Sbjct: 1  MKVVSLFSGIGGIELGLHQSGHTTEI----FCEVDPLAKAVLSKNFPGVKIEDDINEIR- 55

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++ AGFPCQ  SQAG
Sbjct: 56 -ELPSCDLVAAGFPCQDLSQAG 76


>gi|306828113|ref|ZP_07461376.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
 gi|304429650|gb|EFM32696.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
          Length = 214

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK+ + F GIG  R+ L         E    +EI+ +++K+Y+A        GDI+KI 
Sbjct: 3  MLKVFEAFAGIGTQRMALRNIGIPH--EVVAIAEIDKFAIKSYEAIHGPVNNLGDISKIN 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            DIPDHD+    FPCQ  S AG
Sbjct: 61 PDDIPDHDLFTYSFPCQDISVAG 83


>gi|188527903|ref|YP_001910590.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|188144143|gb|ACD48560.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|308063905|gb|ADO05792.1| type II DNA modification enzyme [Helicobacter pylori Sat464]
          Length = 320

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ      ++C   +EIN  +++TY+  F +T  FGD+ +IK
Sbjct: 5  ILTFMDFCSGIGGGRLGLEQCR----LKCVGHAEINHEALRTYELFFKDTHNFGDLMRIK 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 61 PNDLPDFDALISGFPCQAFSING 83


>gi|315587009|gb|ADU41390.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 35A]
          Length = 313

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D DVL++GFPCQ FS  G
Sbjct: 58 DFDVLISGFPCQAFSING 75


>gi|332673919|gb|AEE70736.1| C-5 cytosine-specific DNA methylase [Helicobacter pylori 83]
          Length = 319

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|329960681|ref|ZP_08299024.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT
          12057]
 gi|328532554|gb|EGF59348.1| DNA (cytosine-5-)-methyltransferase [Bacteroides fluxus YIT
          12057]
          Length = 572

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNT-LIFGD 55
          +++ +LF G+GG R+ LE   +    +  ++++  P      +   Y+A F +      D
Sbjct: 5  IRVVELFAGVGGFRIGLEGASDA--YQTIWNNQWEPSTKRQDASLVYKARFGSKGHSNRD 62

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  + T++IPDHD+L+ GFPCQ +S A
Sbjct: 63 INTVPTKEIPDHDLLVGGFPCQDYSVA 89


>gi|325298662|ref|YP_004258579.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
 gi|324318215|gb|ADY36106.1| DNA-cytosine methyltransferase [Bacteroides salanitronis DSM
          18170]
          Length = 336

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          + +  LF G GG+ L      ++   +   ++E++     TY+ NFP+  LI GDI  I 
Sbjct: 1  MTLISLFSGAGGLDLGF----HYAGFKTIIANELDAKICPTYRINFPDVKLIEGDIRNIP 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
          + + PD    ++ G PCQ +S+AG
Sbjct: 57 SSEFPDGITGIIGGPPCQSWSEAG 80


>gi|227536485|ref|ZP_03966534.1| site-specific DNA-methyltransferase [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227243562|gb|EEI93577.1| site-specific DNA-methyltransferase [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 349

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+   LF GIGG  +      +    +  FS E +P+     +  +PNT  + DI   +
Sbjct: 1  MLRHGSLFSGIGGFDI----AASWMGWQNVFSCEKDPFCRTVLKHYWPNTAHYEDIYDFR 56

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
                H D++  GFPCQPFSQAG
Sbjct: 57 ATHFRGHIDIISGGFPCQPFSQAG 80


>gi|228962260|ref|ZP_04123693.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797429|gb|EEM44609.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 180

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   DLF GIG  R+ +E+  +    +C    E N  +  +Y+A           DI  +
Sbjct: 3  LTFIDLFAGIGMFRIGMEKAGH----KCIGWVEWNKPARTSYEAMHDTKGEWTENDIRNV 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              IP  DV  AGFPCQ  S+ G
Sbjct: 59 TGTGIPAADVWCAGFPCQDISKNG 82


>gi|260591129|ref|ZP_05856587.1| modification methylase AluI [Prevotella veroralis F0319]
 gi|260536994|gb|EEX19611.1| modification methylase AluI [Prevotella veroralis F0319]
          Length = 452

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF G+GG  L L++       +C F+SE+       Y+ NF N    G+I  +  
Sbjct: 10 YTFIDLFAGLGGFHLALQK----LGCKCVFASELQTDLQTLYERNF-NMKCSGNINDVNI 64

Query: 62 Q-DIPDHDVLLAGFPCQPFSQAG 83
          + DIP HD+L  GFPCQPFSQAG
Sbjct: 65 KTDIPHHDILCGGFPCQPFSQAG 87


>gi|238765010|ref|ZP_04625947.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238696779|gb|EEP89559.1| DNA-cytosine methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 338

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
           K+ DLFCG GG+     +       E   + + +  ++KTY ANF N  +  +I + I+
Sbjct: 7  FKVIDLFCGAGGLSAGFLKGKQANYFESILAIDNDTAAIKTYNANFGNHGVTANIDEWIE 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
            +IP  D+++ G PCQ FS 
Sbjct: 67 ENEIPQADLVIGGPPCQGFSL 87


>gi|262038316|ref|ZP_06011702.1| modification methylase spri [Leptotrichia goodfellowii F0264]
 gi|261747667|gb|EEY35120.1| modification methylase spri [Leptotrichia goodfellowii F0264]
          Length = 318

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
             D   GIGG RL  E+        C    EI+  + KTYQ  + +   +GD+ K+  +
Sbjct: 4  TFFDFCSGIGGGRLGFEK----NGFICVGHCEIDEKADKTYQLFYNDGRNYGDLMKVNPK 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++PD + L+AGFPCQ FS  G
Sbjct: 60 ELPDFNYLIAGFPCQTFSIVG 80


>gi|294678239|ref|YP_003578854.1| cytosine-specific DNA-methyltransferase [Rhodobacter capsulatus
          SB 1003]
 gi|294477059|gb|ADE86447.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Rhodobacter capsulatus SB 1003]
          Length = 451

 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  DLF G+GG    LE         C F+SE+N      Y+ NF      GDI +   
Sbjct: 4  LKFADLFAGLGGFHQALE----GLGHTCVFASELNSGLADLYEKNFG-IRPHGDIRE-AI 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P HD+L AGFPCQPFS+AG
Sbjct: 58 DDVPPHDILCAGFPCQPFSKAG 79


>gi|90408525|ref|ZP_01216682.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
 gi|90310344|gb|EAS38472.1| DNA-methyltransferase (cytosine-specific) [Psychromonas sp. CNPT3]
          Length = 380

 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 20/102 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            K+  LF G+GG+ L  +  FN +   +  +++E++  ++KTY+ NF + +I GDI KI 
Sbjct: 3   YKVGSLFAGVGGVCLGFKSAFNEKGGYQLIWANELDEQAIKTYRCNFEHNMIPGDIEKIV 62

Query: 61  TQDIPDH-------------------DVLLAGFPCQPFSQAG 83
             +                       DVL AGFPCQ FS AG
Sbjct: 63  KPERAKADGEEALFAQKKMQMLAQPIDVLTAGFPCQAFSIAG 104


>gi|328553026|gb|AEB23518.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
          amyloliquefaciens TA208]
          Length = 503

 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQ--ANFPNTLIFGDIA 57
          L++  LF GIG      E    +     E    SEI+ Y++K+Y    N      FGD++
Sbjct: 4  LRVMSLFSGIG----AFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQSNFGDVS 59

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI  + +P+ D+L+ G PCQ FS AG
Sbjct: 60 KIDKKKLPEFDLLVGGSPCQSFSVAG 85


>gi|228919775|ref|ZP_04083134.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839862|gb|EEM85144.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 442

 Score =  105 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG- 54
           M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 16  MVKVVELFAGVGGFRLGLEA---NENFEIIWGNQWEPLTKAQHAFNCYATQFENKGIHEN 72

Query: 55  -DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DIA++   +IP+HD+L+ GFPCQ +S A
Sbjct: 73  KDIAEVWP-EIPEHDLLVGGFPCQDYSVA 100


>gi|229195244|ref|ZP_04322018.1| Modification methylase Sau3AI [Bacillus cereus m1293]
 gi|228588270|gb|EEK46314.1| Modification methylase Sau3AI [Bacillus cereus m1293]
          Length = 442

 Score =  105 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG- 54
           M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 16  MVKVVELFAGVGGFRLGLEA---NENFEIIWGNQWEPLTKAQHAFNCYATQFENKGIHEN 72

Query: 55  -DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DIA++   +IP+HD+L+ GFPCQ +S A
Sbjct: 73  KDIAEVWP-EIPEHDLLVGGFPCQDYSVA 100


>gi|262402827|ref|ZP_06079388.1| type II restriction-modification system methylation subunit
          [Vibrio sp. RC586]
 gi|262351609|gb|EEZ00742.1| type II restriction-modification system methylation subunit
          [Vibrio sp. RC586]
          Length = 341

 Score =  105 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +   LF G GG+ L   +          FS++I      TY+ N  + LI  DI KI   
Sbjct: 11 RTISLFSGCGGLDLGFHKA----GFNIVFSNDIEKNVESTYRYNLGDILIK-DITKIDID 65

Query: 63 -DIP-DHDVLLAGFPCQPFSQAG 83
           +IP D DV+LAG PCQPFS AG
Sbjct: 66 SEIPNDIDVILAGIPCQPFSSAG 88


>gi|163755904|ref|ZP_02163021.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
 gi|161324075|gb|EDP95407.1| modification methylase (Eco47II, Sau96I) [Kordia algicida OT-1]
          Length = 413

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            ++ +LF G GG+ + LE+      ++C   +EI+ ++ +T + N P+  ++ G+I    
Sbjct: 75  YRVLELFAGAGGLAIGLEKA----GIKCVALNEIDKWACQTLRENRPDWNVLEGNIKSFD 130

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
                D  +++  GFPCQ FS AG
Sbjct: 131 FSKYKDKVEIVTGGFPCQAFSYAG 154


>gi|167753338|ref|ZP_02425465.1| hypothetical protein ALIPUT_01612 [Alistipes putredinis DSM
          17216]
 gi|167659269|gb|EDS03399.1| hypothetical protein ALIPUT_01612 [Alistipes putredinis DSM
          17216]
          Length = 319

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF GIGG  L  E         C    EI+P+  K  + +FPN   + DI     
Sbjct: 1  MTHASLFSGIGGFDLAAEWAGWTNAFNC----EIDPFCRKVLKYHFPNAEQYEDIRATDF 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
              D  DVL  GFPCQPFS AG
Sbjct: 57 TVWKDRIDVLTGGFPCQPFSLAG 79


>gi|261326799|emb|CBH09772.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 621

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 21/99 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNT--- 50
              ++LF GIG  R+ LE+       +C F+ E  P++   Y AN          N    
Sbjct: 226 FTFSELFAGIGMFRVGLER----IGGKCVFAVECAPHARSVYHANHHLPRRSSCGNEALP 281

Query: 51  ------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                  + GDI  + +   P HDVL AGFPCQ F++AG
Sbjct: 282 ATRRPVPLVGDITTVPSHYFPHHDVLTAGFPCQSFAKAG 320


>gi|328912201|gb|AEB63797.1| Modification methylase Rho11sI [Bacillus amyloliquefaciens LL3]
          Length = 503

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQ--ANFPNTLIFGDIA 57
          L++  LF GIG      E    +     E    SEI+ Y++K+Y    N    L +GD++
Sbjct: 4  LRVMSLFSGIG----AFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQLNYGDVS 59

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI    +P+ D+L+ G PCQ FS AG
Sbjct: 60 KIDKTFLPEFDLLVGGSPCQSFSVAG 85


>gi|292670760|ref|ZP_06604186.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647381|gb|EFF65353.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 476

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GIGG  L       H  V   ++SEI P+       +FPN   FGDI +I  
Sbjct: 1  MTLGSLFDGIGGWLL----AARHAGVTPVWASEIEPFPCSVTARHFPNVKQFGDITQIDP 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++ AG PCQ  S AG
Sbjct: 57 DEIDPVDIICAGSPCQDLSIAG 78


>gi|239624728|ref|ZP_04667759.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521114|gb|EEQ60980.1| DNA (cytosine-5-)-methyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 554

 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +  + DLF G GG+ L  +QT     V+   ++E N  + KTY+ NF    ++ D+  I 
Sbjct: 22  IYNVIDLFAGAGGLSLGFKQTGQ---VKIIAAAENNLNARKTYKRNFKLARLYSDVRTID 78

Query: 61  TQDIPD----HDVLLAGFPCQPFSQA 82
             ++ D     D+++ G PCQ FS A
Sbjct: 79  YAELQDTVGPVDIVIGGPPCQGFSNA 104


>gi|229148238|ref|ZP_04276541.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
 gi|228635250|gb|EEK91777.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST24]
          Length = 180

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L   DLF G+G +R+ LEQ  +     C    E N  + KTY+A           DI   
Sbjct: 3  LTFIDLFAGVGMMRIGLEQAGH----TCIGFCEWNEPARKTYEAMHDTEGEWTEHDIRNA 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K   IP  D+  AGFPC   S+ G
Sbjct: 59 KGTTIPRADIWTAGFPCTDISKNG 82


>gi|238788388|ref|ZP_04632182.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC
          33641]
 gi|238723634|gb|EEQ15280.1| DNA-cytosine methyltransferase [Yersinia frederiksenii ATCC
          33641]
          Length = 380

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
           K+ DLFCG GG+     +       E   + + +  +++TY ANF N  +  +I + I 
Sbjct: 11 FKVIDLFCGAGGLSAGFLKGKQANYFESILAIDNDTAAIRTYNANFGNHGVTANIDEWIA 70

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
            +IP  D+++ G PCQ FS 
Sbjct: 71 ENEIPQADIVIGGPPCQGFSL 91


>gi|109947180|ref|YP_664408.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis
          str. Sheeba]
 gi|109714401|emb|CAJ99409.1| C-5 cytosine-specific DNA methylase [Helicobacter acinonychis
          str. Sheeba]
          Length = 315

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D DVL++GFPCQ FS  G
Sbjct: 58 DFDVLISGFPCQAFSING 75


>gi|126700764|ref|YP_001089661.1| putative DNA-methyltransferase [Clostridium difficile 630]
 gi|115252201|emb|CAJ70040.1| putative DNA-methyltransferase [Clostridium difficile]
          Length = 541

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M  + DLF G GG+ L  E T   +        E N  + KTY  N P+   + DI ++ 
Sbjct: 1  MYNVIDLFAGAGGLSLGFEMT---KKFNMVAFVEKNDNAAKTYLENHPSVKRYCDIKRLD 57

Query: 61 TQDI----PDHDVLLAGFPCQPFSQA 82
           QDI       DV++ G PCQ FS A
Sbjct: 58 FQDILNSVDKIDVVIGGPPCQGFSNA 83


>gi|251811836|ref|ZP_04826309.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|282875124|ref|ZP_06283997.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          SK135]
 gi|251804633|gb|EES57290.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|281295889|gb|EFA88410.1| DNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
          SK135]
          Length = 329

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
              DLF G GG+ L      +    +  FS E +  + +TY+ NFPN ++   DI +I 
Sbjct: 3  YNYIDLFSGAGGMSLGF----DLEGFKNVFSVEYDLQTAQTYRYNFPNHVLINKDIQEIS 58

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
          T +I         DV++ G PCQ FS AG
Sbjct: 59 TNEIKKIINNNTVDVIIGGPPCQGFSLAG 87


>gi|262381005|ref|ZP_06074143.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_33B]
 gi|262296182|gb|EEY84112.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 306

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF G+GG  L  E        E  F  EIN +  K  + +FP ++ + DI +   
Sbjct: 1  MTHGSLFSGVGGFDLAAE----WMGWENLFHCEINEWCQKVLRFHFPKSIQYDDITRTDF 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 DVL  GFPCQPFS AG
Sbjct: 57 TPWRGKVDVLTGGFPCQPFSVAG 79


>gi|535137|emb|CAA56493.1| type II DNA-methyltransferase [Bacillus phage phi3T]
          Length = 326

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            + +LFCG G   L     F     E   + +I+  +VK Y+ NF + +   DI +I  
Sbjct: 14 FTVLELFCGGG---LGAT-GFKSAGYEIVKALDIDKNAVKAYRHNFGDYVEQADINEIDI 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +PD DV+  G PCQ FS AG
Sbjct: 70 DSLPDTDVIFGGPPCQDFSVAG 91


>gi|261839852|gb|ACX99617.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori 52]
          Length = 319

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLEQC----HLKCVGHAEINHGALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            D+PD D L++GFPCQ FS  G
Sbjct: 59 PNDLPDFDALISGFPCQAFSING 81


>gi|219122422|ref|XP_002181544.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406820|gb|EEC46758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 495

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               +LF GIGG  + LE        EC F SEI+      Y  NF      GDI +++ 
Sbjct: 141 FSYAELFAGIGGFGVALES----LGGECVFCSEIDEVCRTVYALNFSTKNQHGDIYEVRD 196

Query: 62  QDIPDH-DVLLAGFPCQPFS 80
           +D P   D+L+ GFPCQPFS
Sbjct: 197 RDFPSQLDLLVGGFPCQPFS 216


>gi|293371778|ref|ZP_06618188.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292633230|gb|EFF51801.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 337

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+ L   +       +   ++E +     T++ANF +T LI GDI  I 
Sbjct: 1  MNLISLFSGAGGLDLGFHKA----GFKVVTANEFDAKICPTFRANFSDTNLIEGDIRDIP 56

Query: 61 TQDIPDHD-VLLAGFPCQPFSQAG 83
          + + PD+   ++ G PCQ +S+AG
Sbjct: 57 SSEFPDNIAGIIGGPPCQSWSEAG 80


>gi|330723388|gb|AEC45758.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis MCLD]
          Length = 407

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN--TLIFG 54
          +K+ +LF G+GG RL  E+T      +  ++++  P     ++   Y  +F N    +  
Sbjct: 9  IKVVELFAGVGGFRLGFERTSKL--FKTIWANQWEPNKTKQWAFDCYTKHFGNSDNHVNE 66

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DIA +    +P+HD+L+ GFPCQ +S A
Sbjct: 67 DIANV-IDQVPEHDLLVGGFPCQDYSVA 93


>gi|326567346|gb|EGE17461.1| type II DNA modification enzyme [Moraxella catarrhalis BC1]
          Length = 327

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ +
Sbjct: 3  LKFMDFCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNS 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD DV+LAGFPCQ FS  G
Sbjct: 59 DDLPDFDVMLAGFPCQTFSIVG 80


>gi|326563801|gb|EGE14052.1| type II DNA modification enzyme [Moraxella catarrhalis 46P47B1]
 gi|326566814|gb|EGE16953.1| type II DNA modification enzyme [Moraxella catarrhalis 103P14B1]
 gi|326576727|gb|EGE26634.1| type II DNA modification enzyme [Moraxella catarrhalis 101P30B1]
          Length = 327

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D   GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ +
Sbjct: 3  LKFMDFCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNS 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+PD DV+LAGFPCQ FS  G
Sbjct: 59 DDLPDFDVMLAGFPCQTFSIVG 80


>gi|304373002|ref|YP_003856211.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis HUB-1]
 gi|304309193|gb|ADM21673.1| DNA-cytosine methyltransferase family protein [Mycoplasma
          hyorhinis HUB-1]
          Length = 407

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN--TLIFG 54
          +K+ +LF G+GG RL  E+T      +  ++++  P     ++   Y  +F N    +  
Sbjct: 9  IKVVELFAGVGGFRLGFERTSKL--FKTIWANQWEPNKTKQWAFDCYTKHFGNSDNHVNE 66

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          DIA +    +P+HD+L+ GFPCQ +S A
Sbjct: 67 DIANV-IDQVPEHDLLVGGFPCQDYSVA 93


>gi|315654722|ref|ZP_07907628.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
 gi|315491186|gb|EFU80805.1| modification methylase NgoPII [Mobiluncus curtisii ATCC 51333]
          Length = 360

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + +  LF G GG+ L  EQ           ++E +P   +T++AN P+T  I GDI  + 
Sbjct: 6  MNVISLFSGCGGLDLGFEQA----GFNIPVANEFDPTIYETFKANHPHTHLIEGDIRGVT 61

Query: 61 TQDI-PDHD----VLLAGFPCQPFSQAG 83
           +DI P  D     ++ G PCQ +S+AG
Sbjct: 62 IEDIAPFIDGEVAGIIGGPPCQSWSEAG 89


>gi|325912423|ref|ZP_08174818.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
 gi|325475765|gb|EGC78936.1| modification methylase HhaI [Lactobacillus iners UPII 143-D]
          Length = 314

 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +C +SSE + Y+ +TY+ NF +    GDI +I  ++IPDHD+L AGFPCQ FS +G
Sbjct: 11 GAQCVYSSEWDKYAQETYKMNFGDVP-EGDITQIDEKNIPDHDILCAGFPCQAFSISG 67


>gi|17228429|ref|NP_484977.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17130280|dbj|BAB72891.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 477

 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K    F G  G+ L  E+      +E   + E++ Y  +T  AN P+  + GDIA    Q
Sbjct: 74  KAISFFSGAMGLDLGFEKA----GIEILLACEVDKYCRQTIVANKPDIALLGDIAAYSAQ 129

Query: 63  DIPDH--------DVLLAGFPCQPFSQAG 83
           DI DH        D++L G PCQ FS AG
Sbjct: 130 DILDHANLAKEDVDIMLGGPPCQAFSTAG 158


>gi|314994131|ref|ZP_07859441.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
 gi|313591449|gb|EFR70294.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133B]
          Length = 130

 Score =  104 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|308176203|ref|YP_003915609.1| DNA (cytosine-5-)-methyltransferase-like protein [Arthrobacter
           arilaitensis Re117]
 gi|307743666|emb|CBT74638.1| DNA (cytosine-5-)-methyltransferase-like protein [Arthrobacter
           arilaitensis Re117]
          Length = 391

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  LF G GG+ L +E  F     E  + SEIN    + +  ++P+    GDI  I  
Sbjct: 32  LRVGSLFSGYGGLDLAVEYQFIA---ETIWFSEINEPVARVFSHHWPDVPNLGDITAIDW 88

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             +P  D++  GFPCQ  S  G
Sbjct: 89  TTVPSVDIVCGGFPCQDVSTVG 110


>gi|331082114|ref|ZP_08331242.1| hypothetical protein HMPREF0992_00166 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405709|gb|EGG85239.1| hypothetical protein HMPREF0992_00166 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 523

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 32/110 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------- 47
           +K  D F GIGG R  LE   +     C    E + ++  +Y A                
Sbjct: 1   MKFLDFFAGIGGFRRGLELAGH----TCVGFCEFDKFATASYTAMHLMTEEQKNELKILP 56

Query: 48  --------------PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                                DI  +  + +P  D    G PCQ FS AG
Sbjct: 57  LKKRQKEILKEEYRNGEWYANDIRTVDARSLPKADCWCFGAPCQDFSVAG 106


>gi|209525887|ref|ZP_03274422.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493696|gb|EDZ94016.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 406

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF G GG+ L   +       +  ++ + N  + +T++ N    +   +I +I+  
Sbjct: 17 KLISLFSGCGGMDLPFHRA----GFQVVWAIDCNEAACQTFRRNISENIACDNIQEIEIT 72

Query: 63 DIPDHDVLLAGFPCQPFSQ 81
           +P  D++  GFPCQ FS 
Sbjct: 73 KVPQADLITGGFPCQDFSM 91


>gi|265751237|ref|ZP_06087300.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270294602|ref|ZP_06200804.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
 gi|263238133|gb|EEZ23583.1| DNA-cytosine methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|270276069|gb|EFA21929.1| DNA-cytosine methyltransferase [Bacteroides sp. D20]
          Length = 335

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+ L   +           ++E +     T++ANFP   LI GDI  I 
Sbjct: 1  MELISLFSGAGGLDLGFHKA----GFRTVTANEFDAKICPTFRANFPEVNLIEGDIRDIP 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
          + + PD    ++ G PCQ +S+AG
Sbjct: 57 SCEFPDNITGIIGGPPCQSWSEAG 80


>gi|239625135|ref|ZP_04668166.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
          1_7_47_FAA]
 gi|239519365|gb|EEQ59231.1| EaeI methyltransferase alpha subunit [Clostridiales bacterium
          1_7_47FAA]
          Length = 301

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++    F GIGGI L LE++     +E  +  EI  +  K  + ++PN  +  DI K+  
Sbjct: 1  MRAASFFSGIGGIDLGLEKS----GIEIVYQCEILSFGQKVLKKHWPNIPLSQDITKLTG 56

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          +DIPD ++   GFPCQ  S A
Sbjct: 57 KDIPDAEIFAGGFPCQDLSLA 77


>gi|254779672|ref|YP_003057778.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
 gi|254001584|emb|CAX29633.1| M.HpyAVIII, a type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
          Length = 318

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +L   D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I 
Sbjct: 3  ILTFMDFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRIN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++PD D L++GFPCQ FS  G
Sbjct: 59 PNNLPDFDALVSGFPCQAFSING 81


>gi|298735876|ref|YP_003728401.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|298355065|emb|CBI65937.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 312

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D+L++GFPCQ FS  G
Sbjct: 58 DFDMLVSGFPCQAFSING 75


>gi|188527268|ref|YP_001909955.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
 gi|188143508|gb|ACD47925.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Shi470]
          Length = 348

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|317180646|dbj|BAJ58432.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 348

 Score =  104 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|327463103|gb|EGF09424.1| modification methylase ScrFIA [Streptococcus sanguinis SK1]
          Length = 346

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
          LKI  LF G GG  +     F+  +       +E  ++++I+  + K ++ NF  T    
Sbjct: 4  LKIASLFSGGGGTDIGFAGGFDFLDQHYADNQIEIVYANDIDDSANKMFEKNFGITPDNR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          ++ ++K+ +IP  D+L  GFPCQ FS 
Sbjct: 64 NVREVKSNEIPSFDILTGGFPCQSFSV 90


>gi|317179147|dbj|BAJ56935.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 351

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|307293581|ref|ZP_07573425.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306879732|gb|EFN10949.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
          +K   LF G GG     E        E   + E + Y+  TY+ NFP T +F GDI    
Sbjct: 1  MKAVSLFAGCGGFCEGAELA----GFEITVAVEWDKYACMTYRENFPKTPLFEGDIHDFL 56

Query: 60 -------KTQDIPDHDVLLAGFPCQPFSQAG 83
                     + D D++  G PCQ FSQ G
Sbjct: 57 KPGSDHETKYKLKDLDLVFGGPPCQGFSQIG 87


>gi|225862882|ref|YP_002748260.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225789623|gb|ACO29840.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 360

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          ++ DLFCG GGI      +      E     +IN  +V+T+  NFP++  +  DI KIK 
Sbjct: 4  RVIDLFCGCGGISEGFRLS----GFEIVGGLDINEDAVETFNKNFPDSQAYCADIEKIKN 59

Query: 62 QDIP-------DHDVLLAGFPCQPFSQA 82
           DIP       D DV++ G PCQ FS A
Sbjct: 60 DDIPFMFDLLGDIDVIVGGPPCQGFSSA 87


>gi|150007509|ref|YP_001302252.1| site-specific DNA-methyltransferase [Parabacteroides distasonis
          ATCC 8503]
 gi|149935933|gb|ABR42630.1| site-specific DNA-methyltransferase [Parabacteroides distasonis
          ATCC 8503]
          Length = 427

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF G+GG  L  E        E  F  EIN +  K  + +FP ++ + DI +   
Sbjct: 1  MTHGSLFSGVGGFDLAAE----WMGWENLFHCEINEWCQKVLRFHFPKSIQYDDITRTDF 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 DVL  GFPCQPFS AG
Sbjct: 57 TPWRGKVDVLTGGFPCQPFSTAG 79


>gi|239918514|ref|YP_002958072.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|281415284|ref|ZP_06247026.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
 gi|239839721|gb|ACS31518.1| DNA-methyltransferase Dcm [Micrococcus luteus NCTC 2665]
          Length = 315

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++   F GIGG  L  E       +   +  EI  +  +  + ++P      +I  +  
Sbjct: 13 LRMASFFTGIGGFDLGFENA----GIRTVYQCEIKDFCNQVLEYHWPEIPRGTNIELVNP 68

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           DIP+ D+   GFPCQ  S A
Sbjct: 69 DDIPEADIWTGGFPCQDISLA 89


>gi|206975132|ref|ZP_03236046.1| modification methylase HaeIII [Bacillus cereus H3081.97]
 gi|206746553|gb|EDZ57946.1| modification methylase HaeIII [Bacillus cereus H3081.97]
          Length = 352

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
           + DLF G+GG+ L  EQ       E   ++E +      Y+ N  NT +I GDIA++  
Sbjct: 4  TVIDLFAGVGGLSLGFEQ----EGFEVVLANEYDESIANAYKKNHRNTKMIVGDIAELDI 59

Query: 62 QDI-----PDHDVLLAGFPCQPFSQAG 83
          +++        DV++ G PCQ FSQ G
Sbjct: 60 KNVFCPYVGKIDVIIGGPPCQGFSQKG 86


>gi|1709155|sp|P50196|MTE8_ECOLX RecName: Full=Modification methylase Eco47II; Short=M.Eco47II;
           AltName: Full=Cytosine-specific methyltransferase
           Eco47II
 gi|558571|emb|CAA57629.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Escherichia coli]
 gi|1098127|prf||2115269B methyltransferase Eco47IIM
          Length = 417

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + +LF G GG+ L LE+      ++    +EI+ ++ KT + N P   ++ GD++++ 
Sbjct: 81  YTVLELFAGAGGMALGLEKA----GLKSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQVD 136

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
                +  DVL  GFPCQ FS AG
Sbjct: 137 FTPYRNTVDVLAGGFPCQAFSYAG 160


>gi|314940406|ref|ZP_07847565.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a04]
 gi|313640387|gb|EFS04967.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium
          TX0133a04]
          Length = 130

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +   DLF GIGG  L +EQ  +    +C    EI+ ++ ++Y+A       +   DI  +
Sbjct: 1  MTFLDLFAGIGGFCLGMEQAGH----QCIGFCEIDDFARQSYKAIHDTSKEVEMHDITSV 56

Query: 60 KTQDIPD---HDVLLAGFPCQPFSQAG 83
            + I      D+L  GFPCQ FS AG
Sbjct: 57 SDEFIQSLGPVDILCGGFPCQAFSIAG 83


>gi|281491829|ref|YP_003353809.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
 gi|281375540|gb|ADA65046.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
          Length = 351

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
           +I  LF G GG  +     F+          VE  F+++I   + + ++ NF       
Sbjct: 4  FRIASLFSGGGGTDIGFSGGFDFLGNHYKNNNVEIVFANDIEEKANEFFEENFKLKPESR 63

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
           I  I + ++PD D+L  GFPCQ FS 
Sbjct: 64 SIRDIDSSELPDFDILTGGFPCQSFSV 90


>gi|113478170|ref|YP_724231.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169218|gb|ABG53758.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 379

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI  LF G GG+ L      ++   +  ++ + + Y+ +T++ N  N +    I  I   
Sbjct: 16 KIISLFSGCGGMDLPF----HYTGFKLVWAIDSDLYACRTFRRNISNIIENNQIENINIA 71

Query: 63 DIPDHDVLLAGFPCQPFSQ 81
          ++P+ D+++ GFPCQ FS 
Sbjct: 72 EVPEADLIIGGFPCQDFSM 90


>gi|257464589|ref|ZP_05628960.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
          202]
 gi|257450249|gb|EEV24292.1| putative 5-methylcytosine methyltransferase [Actinobacillus minor
          202]
          Length = 331

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L   DLF G GG  L  ++           S EI PY  +TY+ANFP   I   D+ ++ 
Sbjct: 3  LTYIDLFSGAGGFSLGFDR----VGFCQLLSVEIEPYYCETYRANFPKHHILQRDLTELP 58

Query: 61 TQDI------PDHDVLLAGFPCQPFSQAG 83
            ++         DV++ G PCQ FS AG
Sbjct: 59 DDELLVLLDNQKVDVVIGGPPCQGFSMAG 87


>gi|168821212|ref|ZP_02833212.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205342142|gb|EDZ28906.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|320088731|emb|CBY98489.1| C-5 cytosine-specific DNA methylase family protein [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 361

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+   +         +  F++++   + KT    FP+T +  GDI++I 
Sbjct: 12 IRVLSLFSGCGGMDFGITSA----GGDIVFANDVVENACKTLGNYFPDTDIRHGDISQI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  PD D+++ G+PCQ FS AG
Sbjct: 67 -QSFPDVDIVVGGYPCQSFSMAG 88


>gi|317010732|gb|ADU84479.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          SouthAfrica7]
          Length = 348

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCYNLPCTSIDILLGGPPCQSYSTLG 83


>gi|228957327|ref|ZP_04119088.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228802360|gb|EEM49216.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 427

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EIPEHDLLVGGFPCQDYSVA 85


>gi|229078249|ref|ZP_04210814.1| Modification methylase Sau3AI [Bacillus cereus Rock4-2]
 gi|228705049|gb|EEL57470.1| Modification methylase Sau3AI [Bacillus cereus Rock4-2]
          Length = 427

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EIPEHDLLVGGFPCQDYSVA 85


>gi|229171704|ref|ZP_04299279.1| Modification methylase Sau3AI [Bacillus cereus MM3]
 gi|228611850|gb|EEK69097.1| Modification methylase Sau3AI [Bacillus cereus MM3]
          Length = 430

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EIPEHDLLVGGFPCQDYSVA 85


>gi|91215328|ref|ZP_01252299.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
 gi|91186280|gb|EAS72652.1| modification methylase (Eco47II, Sau96I) [Psychroflexus torquis
           ATCC 700755]
          Length = 412

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           + +LF G GG+ + LEQ+     ++C   +EI+ ++ +T + N P+  ++ GDI     +
Sbjct: 78  VLELFAGAGGLAIGLEQS----GIKCTALNEIDKWACQTLRTNRPSWNILEGDIKNFDFR 133

Query: 63  DIP-DHDVLLAGFPCQPFSQAG 83
                 D++  GFPCQ FS AG
Sbjct: 134 QYENKVDIVTGGFPCQAFSYAG 155


>gi|229108527|ref|ZP_04238142.1| Modification methylase Sau3AI [Bacillus cereus Rock1-15]
 gi|228674934|gb|EEL30163.1| Modification methylase Sau3AI [Bacillus cereus Rock1-15]
          Length = 427

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EIPEHDLLVGGFPCQDYSVA 85


>gi|268589649|ref|ZP_06123870.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
 gi|291314961|gb|EFE55414.1| modification methylase Eco47II [Providencia rettgeri DSM 1131]
          Length = 424

 Score =  103 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + +LF G GG+ L LE+            +EI+ ++  T + N P+  ++ GD+A I 
Sbjct: 75  FTVLELFAGAGGMALGLEKAGLSA----VMLNEIDKHACNTLRLNRPDWNVVEGDVAGID 130

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
                   DVL  GFPCQ FS AG
Sbjct: 131 FSQYKGKVDVLAGGFPCQAFSYAG 154


>gi|229101666|ref|ZP_04232385.1| Modification methylase Sau3AI [Bacillus cereus Rock3-28]
 gi|228681735|gb|EEL35893.1| Modification methylase Sau3AI [Bacillus cereus Rock3-28]
          Length = 427

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    +IP+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EIPEHDLLVGGFPCQDYSVA 85


>gi|237742049|ref|ZP_04572530.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
 gi|229429697|gb|EEO39909.1| modification methylase HpaII [Fusobacterium sp. 4_1_13]
          Length = 385

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA---- 57
           K  DLF GIGGIR   E T      E   S+EI+ Y+ +TY+  F N   F D++    
Sbjct: 7  YKTIDLFSGIGGIRKGFELTGF---FENIISAEIDKYACETYKHLF-NENPFNDVSSEEF 62

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KIK + + ++D+LLAGFPCQ FS AG
Sbjct: 63 KIKLESL-EYDILLAGFPCQSFSIAG 87


>gi|238751088|ref|ZP_04612584.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
 gi|238710778|gb|EEQ03000.1| Modification methylase FnuDI [Yersinia rohdei ATCC 43380]
          Length = 362

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+   +E        +  F+++I   + KT    FP++ +  GDI+ I 
Sbjct: 12 IRVLSLFSGGGGMDFGIESA----GGKVVFANDIVENACKTLDKYFPDSDIRLGDISNI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  P  DV++ G+PCQ FS AG
Sbjct: 67 -QSFPCVDVVVGGYPCQSFSMAG 88


>gi|15611502|ref|NP_223153.1| type II DNA modification (methyltransferase [Helicobacter pylori
          J99]
 gi|4154963|gb|AAD06007.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
          pylori J99]
          Length = 351

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPRVPIDILLGGPPCQSYSTLG 83


>gi|15645735|ref|NP_207912.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
          pylori 26695]
 gi|2314272|gb|AAD08164.1| cytosine specific DNA methyltransferase (BSP6IM) [Helicobacter
          pylori 26695]
          Length = 312

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D L++GFPCQ FS  G
Sbjct: 58 DFDALISGFPCQAFSING 75


>gi|168205340|ref|ZP_02631345.1| putative modification methylase Eco47II [Clostridium perfringens E
           str. JGS1987]
 gi|170663208|gb|EDT15891.1| putative modification methylase Eco47II [Clostridium perfringens E
           str. JGS1987]
          Length = 437

 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++++  +F G G +     +    ++ +  F+S+I   + ++Y+ N  N ++   I +I 
Sbjct: 118 IIRVVSMFSGAGMLDYAFHK---DQDFKIVFASDIMKEACESYRENIGNHIVNKSITEIN 174

Query: 61  TQDIPDHDVLLAGFPCQPFSQA 82
           + +IP  DV+L G PC+PFS A
Sbjct: 175 SNEIPVADVILGGVPCKPFSNA 196


>gi|317012300|gb|ADU82908.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Lithuania75]
          Length = 348

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|261839303|gb|ACX99068.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori 52]
          Length = 348

 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|157691446|ref|YP_001485908.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680204|gb|ABV61348.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 548

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLF G GG+ L   QT      E   + EIN  + +TY  N    +   DI  I  +
Sbjct: 5  KVLDLFAGAGGLSLGFSQTGR---FETVMAVEINENAAQTYTKNHKIEVNTQDIRSINFK 61

Query: 63 D------IPDHDVLLAGFPCQPFSQA 82
          D      + +  +++ G PCQ FS A
Sbjct: 62 DYKKYPILKEVSLVIGGPPCQGFSNA 87


>gi|330996255|ref|ZP_08320145.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
 gi|329573759|gb|EGG55350.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
          Length = 351

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGG  L  E           F  EIN +  +    +FPN   + DI K   
Sbjct: 5  LTHGSLFSGIGGFDLAAE----WTGWTNVFHCEINEFCTRILNHHFPNAEHYADITKTDF 60

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 DVL  GFPCQPFS AG
Sbjct: 61 TPWRGRIDVLSGGFPCQPFSLAG 83


>gi|317181803|dbj|BAJ59587.1| Type II DNA modification enzyme [Helicobacter pylori F57]
          Length = 351

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHKKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|124009862|ref|ZP_01694529.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123984098|gb|EAY24464.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 353

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L  E+          F+ E NP+     +  +P++  + DI +I  
Sbjct: 1  MRHASLFSGLGGFDLAAER----MGWVNVFTVENNPFCQTILRHYWPDSTHYEDIRQIDF 56

Query: 62 QD-IPDHDVLLAGFPCQPFSQAG 83
                 D+L  GFPCQPFSQAG
Sbjct: 57 SPYYGQIDLLTGGFPCQPFSQAG 79


>gi|119512301|ref|ZP_01631388.1| DNA modification methylase [Nodularia spumigena CCY9414]
 gi|119463081|gb|EAW44031.1| DNA modification methylase [Nodularia spumigena CCY9414]
          Length = 502

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
              DLF GIGG ++ L     H        SEIN  ++KTY  NF     +  GDI KI
Sbjct: 6  FTFIDLFAGIGGFKMALSNNGGHS----LGFSEINQDAIKTYCDNFQIEPSYNLGDITKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++P HD+L AG PCQ +S AG
Sbjct: 62 K--ELPPHDLLTAGVPCQSWSIAG 83


>gi|256375192|ref|YP_003098852.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255919495|gb|ACU35006.1| DNA-cytosine methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 361

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQ 62
          + DLF G GG+             E   + E + ++  TY ANF  + + + DIA +   
Sbjct: 1  MIDLFAGCGGMTSGFTSA----GFEPVMAVEHDLHAASTYAANFGEDHVRWADIAAVPDS 56

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P  DV++ G PCQ FS  G
Sbjct: 57 AVPRVDVVVGGPPCQGFSTLG 77


>gi|328947038|ref|YP_004364375.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447362|gb|AEB13078.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 466

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               DLF G+GG  L +++       +C F+SE+       Y+ N+     FGDI K+  
Sbjct: 26  FSFIDLFAGLGGFHLAMQK----LGGKCVFASELKEDLRILYKENYG-IDCFGDINKVDI 80

Query: 62  Q-DIPD-HDVLLAGFPCQPFSQAG 83
             DIP   D+L AGFPCQPFS+AG
Sbjct: 81  DKDIPKKFDMLCAGFPCQPFSKAG 104


>gi|166237008|gb|ABY86226.1| BsaHI DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 323

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLF G GG+    E        E   + E    +++ Y+ NF + +I  D++ ++ 
Sbjct: 1  MRVIDLFAGCGGMSKGFENA----GYEIVAAFENWKDAIEVYKKNFKHPVIEYDLSNVED 56

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
           +I      D+++ G PCQ +S AG
Sbjct: 57 YNIFKQFKPDMIIGGPPCQDYSSAG 81


>gi|72386611|ref|XP_843730.1| cytosine-specific DNA methylase [Trypanosoma brucei TREU927]
 gi|62175408|gb|AAX69550.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei]
 gi|70800262|gb|AAZ10171.1| cytosine-specific DNA methylase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 621

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 21/99 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNT--- 50
              ++LF G+G  R+ LE+       +C F+ E  P++   Y AN          N    
Sbjct: 226 FTFSELFAGMGMFRVGLER----IGGKCVFAVECAPHARSVYHANHHLPRRNSCGNEALP 281

Query: 51  ------LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                  + GDI  + +   P HDVL AGFPCQ F++AG
Sbjct: 282 ATRRPVPLVGDITTVPSHYFPHHDVLTAGFPCQSFAKAG 320


>gi|229131851|ref|ZP_04260720.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
 gi|228651598|gb|EEL07564.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
          Length = 427

 Score =  103 bits (258), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N +  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFDVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+   Q+IP+HD+L+ GFPCQ +S A
Sbjct: 58 KDIAE-AWQEIPEHDLLVGGFPCQDYSVA 85


>gi|317013900|gb|ADU81336.1| type II DNA modification (methyltransferase) [Helicobacter pylori
          Gambia94/24]
          Length = 351

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHPHFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HYHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|308172812|ref|YP_003919517.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307605676|emb|CBI42047.1| DNA (cytosine-5-)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
          Length = 406

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + + +LFCG G   +  +            + + +  +VK Y+ NF + +   DI+ +  
Sbjct: 105 MNVLELFCGGGLGAIGFKAA----GYNIVKALDFDKNAVKAYRHNFGDYVEQADISAVDI 160

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             +PD DV+  G PCQ FS AG
Sbjct: 161 DSLPDTDVIFGGPPCQDFSVAG 182


>gi|225158172|ref|ZP_03725067.1| DNA methyltransferase [Opitutaceae bacterium TAV2]
 gi|224802676|gb|EEG20930.1| DNA methyltransferase [Opitutaceae bacterium TAV2]
          Length = 414

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
              LF GIGG  L  ++   +   +C +  EI+       +  FP    F DI ++   
Sbjct: 16 TFGSLFAGIGGFDLGFKRAGMN---DC-WQIEIDENCRDLLRRRFPTCEKFADIREVDVS 71

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +   DV+  GFPCQ  S AG
Sbjct: 72 TLAPVDVICGGFPCQDLSVAG 92


>gi|150024829|ref|YP_001295655.1| modification methyltransferase Sau3AI [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771370|emb|CAL42839.1| Probable modification methyltransferase Sau3AI [Flavobacterium
           psychrophilum JIP02/86]
          Length = 431

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 17/98 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR-----------NVECFFSSEINP-----YSVKTYQA 45
           +K+ +LF G+GG RL LE   N             + E  +S++  P     ++   Y+ 
Sbjct: 5   IKVVELFAGVGGFRLGLEGWNNKSASSNYKENFESSYEIVWSNQWEPSTKVQHASMVYET 64

Query: 46  NFPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            +        DI+ ++   IPDHD+L+ GFPCQ +S A
Sbjct: 65  RWDKKNHCNQDISTVEVDIIPDHDLLVGGFPCQDYSVA 102


>gi|308182632|ref|YP_003926759.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori PeCan4]
 gi|308064817|gb|ADO06709.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori PeCan4]
          Length = 351

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQANHEEVQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|212694208|ref|ZP_03302336.1| hypothetical protein BACDOR_03734 [Bacteroides dorei DSM 17855]
 gi|212663274|gb|EEB23848.1| hypothetical protein BACDOR_03734 [Bacteroides dorei DSM 17855]
          Length = 370

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G GG+ +   +   H      F++++   +  TY+ N  + +I GDI  +  
Sbjct: 12 IRTISLFSGAGGLDIGAIKAGAH----VVFANDMMKEACLTYKENIGDHIIQGDINTL-F 66

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
           +I      D+++ G PCQ FS AG
Sbjct: 67 DEIGKVDNPDLVIGGPPCQGFSVAG 91


>gi|255280633|ref|ZP_05345188.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
 gi|255269098|gb|EET62303.1| modification methylase DdeI [Bryantella formatexigens DSM 14469]
          Length = 378

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          MLK  DLF G GGI     +        C  +++I+  +  T+  N P    +  D+ ++
Sbjct: 1  MLKTIDLFAGAGGITEGFRKA----GYVCVCANDIDEEAKHTFTYNHPTVPFVLKDVREV 56

Query: 60 KTQDI--------PDHDVLLAGFPCQPFSQAG 83
             ++         + DV+  G PCQ FS AG
Sbjct: 57 TAAELLAAANCTAAEIDVITGGPPCQGFSLAG 88


>gi|315586449|gb|ADU40830.1| possible DNA (cytosine-5-)-methyltransferase [Helicobacter pylori
          35A]
          Length = 351

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPHFELIWANDIDKDAILSYQANHRKTQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             + P    D+LL G PCQ +S  G
Sbjct: 58 NCHNFPCVSIDILLGGPPCQSYSTLG 83


>gi|167772229|ref|ZP_02444282.1| hypothetical protein ANACOL_03604 [Anaerotruncus colihominis DSM
          17241]
 gi|167665332|gb|EDS09462.1| hypothetical protein ANACOL_03604 [Anaerotruncus colihominis DSM
          17241]
          Length = 603

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M  +  LF GIGG  L   +      +E  ++SEI  + ++  +  FP+ L  GDI K+ 
Sbjct: 1  MPTLGSLFDGIGGFPLAAVR----NGIEPVWASEIEAFPIEVTRKRFPSILHVGDITKLN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            ++P  D++  G PCQ  S AG
Sbjct: 57 GAELPPVDIITGGSPCQDLSVAG 79


>gi|160939012|ref|ZP_02086363.1| hypothetical protein CLOBOL_03906 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437975|gb|EDP15735.1| hypothetical protein CLOBOL_03906 [Clostridium bolteae ATCC
          BAA-613]
          Length = 168

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ D FCG GG+ +  +        E   + + + Y+V++Y+AN  + +   DI ++  
Sbjct: 5  LKVNDFFCGCGGMGIAFKNA----GYEIAGAWDFDKYAVESYRANVGDHVQKADIKELHQ 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP  DV   GFPCQ  S AG
Sbjct: 61 ADIPQADVWAFGFPCQDLSVAG 82


>gi|182417652|ref|ZP_02948971.1| modification methylase Sau3AI [Clostridium butyricum 5521]
 gi|237668746|ref|ZP_04528730.1| modification methylase Sau3AI (Cytosine-specificmethyltransferase
          Sau3AI) (M.Sau3AI) [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182378376|gb|EDT75907.1| modification methylase Sau3AI [Clostridium butyricum 5521]
 gi|237657094|gb|EEP54650.1| modification methylase Sau3AI (Cytosine-specificmethyltransferase
          Sau3AI) (M.Sau3AI) [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 426

 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFP-----NTLI 52
           I +LF G+GG R+  E++      +  ++++  P     ++ + Y+++F      +   
Sbjct: 5  TICELFAGVGGFRVGFEKS--SPEWKTVWANQWEPSKKIQHAFECYKSHFETSGGIDEFS 62

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI+K+  + IPDH VL+ GFPCQ +S A
Sbjct: 63 NTDISKVPEEHIPDHTVLVGGFPCQDYSVA 92


>gi|108563484|ref|YP_627800.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107837257|gb|ABF85126.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 313

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D L++GFPCQ FS  G
Sbjct: 58 DFDALISGFPCQAFSING 75


>gi|254411906|ref|ZP_05025682.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181628|gb|EDX76616.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 456

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
               DLF GIGG R+ LE+       +C   SEI+  +V  Y+ NF      + L  GDI
Sbjct: 28  FTFVDLFAGIGGFRIPLEE----LGGKCLGYSEIDKEAVNVYKKNFISYINADELYLGDI 83

Query: 57  AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
             I    +P + D+L+ G PCQP+S AG
Sbjct: 84  --IALHKLPFEVDILVGGVPCQPWSIAG 109


>gi|206972340|ref|ZP_03233286.1| C-5 cytosine-specific DNA methylase [Bacillus cereus AH1134]
 gi|206732665|gb|EDZ49841.1| C-5 cytosine-specific DNA methylase [Bacillus cereus AH1134]
          Length = 503

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+I  LF G G   L       +   +  F+ E +  +VKTY+ N    ++  DI     
Sbjct: 182 LQIVSLFSGSGVFDLGF----KNEGFDIIFAIEKDEDAVKTYRHNLGEHVVCHDITTYPK 237

Query: 62  QDIPDHDVLLAGFPCQPFS 80
           +DIP+  +++ G PCQ FS
Sbjct: 238 KDIPNAPIIIGGPPCQGFS 256


>gi|1709158|sp|P50192|MTHA_HAEPH RecName: Full=Modification methylase HphIA; Short=M.HphIA; AltName:
           Full=Cytosine-specific methyltransferase HphIA; AltName:
           Full=M.Hphi(C)
 gi|732729|emb|CAA59690.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Haemophilus parahaemolyticus]
          Length = 372

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           L   DLF G GG  L  ++           S EI P+   TY+ANFP+  ++  D+  + 
Sbjct: 45  LTYIDLFSGAGGFSLGFDRA----GFHQLLSVEIEPHYCDTYRANFPDHQVLQQDLTTLS 100

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
             ++         DV++ G PCQ FS AG
Sbjct: 101 DDNLLRHINHRKVDVVIGGPPCQGFSMAG 129


>gi|14520267|ref|NP_125742.1| modification methylase [Pyrococcus abyssi GE5]
 gi|5457482|emb|CAB48973.1| Citosine-specific modificatrion methylase [Pyrococcus abyssi GE5]
          Length = 309

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ DLF G GG  L           E   + E      KTY  NFP   +I  DI  I 
Sbjct: 8  MKVLDLFAGAGGFSLGF----KLVGFEIVAAIENFKPKAKTYSHNFPGVKVIAQDIKVIS 63

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            +I D DV++ G PC+PF+
Sbjct: 64 PDEIGDVDVIIGGPPCEPFT 83


>gi|317054725|ref|YP_004103193.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
 gi|294869157|gb|ADF47149.1| cytosine specific DNA methyltransferase [Paracoccus aminophilus]
          Length = 363

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M KI DLF G GG+    EQ       +   + E +  + KT+  N P T +F  DI  I
Sbjct: 1  MPKIVDLFAGAGGMTEGFEQA----GYQSALAIEYDEMAAKTFSFNHPQTPVFIKDIRTI 56

Query: 60 KTQDIPDH------DVLLAGFPCQPFSQAG 83
          + + + +       DVL  G PCQ FS AG
Sbjct: 57 QEESVREALKYSPIDVLCGGPPCQGFSLAG 86


>gi|317127846|ref|YP_004094128.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472794|gb|ADU29397.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 564

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK 58
          LK+ DLF G GG+    EQT    + E   + E N  + KT++ N         F DI  
Sbjct: 4  LKVIDLFAGAGGLSAGFEQT---DSFEVIAAIENNKNARKTFRRNHKSLRKEFFFRDIKD 60

Query: 59 IKTQDIPD-----HDVLLAGFPCQPFSQA 82
          +K + I +      D+++ G PCQ FS A
Sbjct: 61 LKYEQINELKKIGIDIVIGGPPCQGFSNA 89


>gi|291514217|emb|CBK63427.1| DNA-methyltransferase (dcm) [Alistipes shahii WAL 8301]
          Length = 296

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + +LF GIGG  L L Q       +  + SEI+ ++V  ++ NFP+    G +  I  
Sbjct: 1  MNLLELFSGIGGFSLGLRQAG--FTFDKVYFSEIDRHAVANFKHNFPHAQHVGSVCDITG 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ FS AG
Sbjct: 59 TSIERPDIITFGSPCQNFSAAG 80


>gi|330718183|ref|ZP_08312783.1| cytosine-specific methyltransferase [Leuconostoc fallax KCTC
          3537]
          Length = 414

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDI 56
          +K  I   F G+GGI L  E           +++E +  +  T++ NF      L   DI
Sbjct: 1  MKNDIVSFFAGVGGIDLGFEDAGE---YRTVYANEFDKNAQHTFETNFKSRGTYLDRRDI 57

Query: 57 AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           ++  +++    P+  VLLAGFPCQPFS AG
Sbjct: 58 KQVDAKEVKAKAPNASVLLAGFPCQPFSIAG 88


>gi|229095557|ref|ZP_04226542.1| Modification methylase Sau3AI [Bacillus cereus Rock3-29]
 gi|228687859|gb|EEL41752.1| Modification methylase Sau3AI [Bacillus cereus Rock3-29]
          Length = 427

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    ++N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NKNFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EVPEHDLLVGGFPCQDYSVA 85


>gi|194017229|ref|ZP_03055841.1| site-specific DNA-methyltransferase [Bacillus pumilus ATCC 7061]
 gi|194011097|gb|EDW20667.1| site-specific DNA-methyltransferase [Bacillus pumilus ATCC 7061]
          Length = 327

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  PY  K    NFPN  +F D+  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPYCQKLLNQNFPNVPVFDDVRTLNR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          Q + D          D++  GFPCQP+S AG
Sbjct: 57 QLLEDKGVIEPNGTIDIISGGFPCQPYSSAG 87


>gi|145592627|ref|YP_001156924.1| C-5 cytosine-specific DNA methylase [Salinispora tropica CNB-440]
 gi|145301964|gb|ABP52546.1| C-5 cytosine-specific DNA methylase [Salinispora tropica CNB-440]
          Length = 236

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L + +LF GIGG+ L L++      +      EINP+       ++P      D+     
Sbjct: 6  LNVLELFAGIGGLSLGLQRA----GLRIVGHVEINPFCRAVLHKHWPEVPCHDDVRTAAA 61

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
            ++ D P  DV+  G+PCQP S AG
Sbjct: 62 WWRSTDRPRVDVVAGGYPCQPESTAG 87


>gi|116750223|ref|YP_846910.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699287|gb|ABK18475.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 399

 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--- 59
           ++ DLF G GG+ L       H   +  ++++ N Y+V+TY +NF    + GDI  +   
Sbjct: 21  RLIDLFSGAGGMTLGFTSRMGHF-FQPVWANDFNMYAVQTYNSNFGTHCVPGDIVDLLRD 79

Query: 60  KTQDIPDHDVLLAGFPCQPFSQ 81
                P  +V++ G PCQ FS 
Sbjct: 80  PAAAPPRAEVVIGGPPCQGFSL 101


>gi|124005671|ref|ZP_01690510.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123988739|gb|EAY28345.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 352

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+GG  L  ++          F+ E NP+     +  +P+T+ + DI +   
Sbjct: 1  MRHASLFSGLGGFDLAAQR----MGWVNVFTVENNPFCQAILRHYWPDTIHYEDIRQTNF 56

Query: 62 QD-IPDHDVLLAGFPCQPFSQAG 83
                 D++  GFPCQPFS AG
Sbjct: 57 HPYYGKVDIITGGFPCQPFSNAG 79


>gi|124009653|ref|ZP_01694325.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123984703|gb|EAY24688.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 354

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++   LF G+GG  L  ++          F+ E NP+     +  +P+T+ + DI +   
Sbjct: 1  MRHASLFSGLGGFDLAAQR----MGWTNVFTVENNPFCQTILRHYWPDTIHYEDIRQTDF 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T      D+L  GFPCQPFSQAG
Sbjct: 57 TPHYGQIDLLTGGFPCQPFSQAG 79


>gi|302870498|ref|YP_003839135.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
 gi|302573357|gb|ADL49559.1| DNA-cytosine methyltransferase [Micromonospora aurantiaca ATCC
          27029]
          Length = 383

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            +F G GG+ L  EQT   + V   ++++I P++V+TY+ N    ++  DIA++   D+
Sbjct: 11 VSMFSGCGGMDLGAEQT---KRVGVVWANDIEPWAVETYRRNLGRHIVAEDIAELDVPDV 67

Query: 65 PDHDVLLAGFPCQPFS 80
          P  D+LLAG PCQ +S
Sbjct: 68 P-CDILLAGPPCQDYS 82


>gi|261400519|ref|ZP_05986644.1| modification methylase Sau3AI [Neisseria lactamica ATCC 23970]
 gi|269209782|gb|EEZ76237.1| modification methylase Sau3AI [Neisseria lactamica ATCC 23970]
          Length = 383

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          +K+ +LF G+GG R+ LE        E  ++++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENANKDL-FETKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   K  ++ D D+++ GFPCQ +S A
Sbjct: 60 IADITNEKFSEM-DADMIVGGFPCQDYSVA 88


>gi|254450593|ref|ZP_05064030.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
 gi|198264999|gb|EDY89269.1| modification methylase FnuDI [Octadecabacter antarcticus 238]
          Length = 365

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K   LF G GG+   ++        +  F++++  Y+ +T++  F +T  I GDI +I 
Sbjct: 1  MKTISLFSGCGGMDFGIKAA----GCDVVFANDVMKYAAETHRKYFKDTDFIHGDIREI- 55

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
            + P  D+++ G+PCQ FS  G
Sbjct: 56 -SNFPSTDLVVGGYPCQSFSMGG 77


>gi|124004276|ref|ZP_01689122.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
 gi|123990346|gb|EAY29845.1| site-specific DNA-methyltransferase [Microscilla marina ATCC
          23134]
          Length = 391

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++   LF G+GG  L  E+          F+ E NP+     +  +P+T  + DI +   
Sbjct: 1  MRHASLFSGMGGFDLAAER----MGWVNVFTVENNPFCQTILRHYWPDTTHYEDIRQTDF 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T      D+L  GFPCQPFSQAG
Sbjct: 57 TPHYGQIDLLTGGFPCQPFSQAG 79


>gi|901818|gb|AAA69959.1| 5C-DNA methyltransferase [Bacillus phage H2]
          Length = 503

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQ--ANFPNTLIFGDIA 57
          L++  LF GIG      E    +     E    SEI+ Y++K+Y    N      FGD++
Sbjct: 4  LRVMSLFSGIG----AFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNVDEQSNFGDVS 59

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI  + +P+ D+L+ G PCQ FS  G
Sbjct: 60 KIDKKKLPEFDLLVGGSPCQSFSVRG 85


>gi|255530844|ref|YP_003091216.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255343828|gb|ACU03154.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
          Length = 350

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDI- 56
          ++  +LF GIGG R   +       +  EC   SEI+ ++  TY AN+     +   DI 
Sbjct: 1  MRYIELFSGIGGFRNAADHLTVDTDQPFECIAFSEIDRHAKSTYLANYNTEGEVQMDDII 60

Query: 57 ----AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
               K   +++PD D+LL GFPCQ FS  G
Sbjct: 61 SFTDEKKNIENLPDFDLLLGGFPCQAFSLLG 91


>gi|291087089|ref|ZP_06345376.2| modification methylase HpaII [Clostridium sp. M62/1]
 gi|291076158|gb|EFE13522.1| modification methylase HpaII [Clostridium sp. M62/1]
          Length = 490

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++  DL  GIGGIR   E   +    E   S+EI+ Y+ +TY+  F +     D+   + 
Sbjct: 20  MRTIDLCSGIGGIRRGFELAGD---FENVLSAEIDKYACQTYEHLFGDDAR-NDVTNDEF 75

Query: 62  QDI---PDHDVLLAGFPCQPFSQAG 83
           + +    D+DVLLAGFPCQPFS+ G
Sbjct: 76  RKLVCRTDYDVLLAGFPCQPFSKIG 100


>gi|296330570|ref|ZP_06873048.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674618|ref|YP_003866290.1| putative C-5 cytosine-specific DNA methylase [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296152252|gb|EFG93123.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412862|gb|ADM37981.1| putative C-5 cytosine-specific DNA methylase [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 298

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    NF    IF D+  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKVLNKNFRGVPIFDDVRTLNR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          Q + +          D++  GFPCQP+S AG
Sbjct: 57 QLLEEKGVIEPGGTIDIISGGFPCQPYSIAG 87


>gi|228913600|ref|ZP_04077228.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228846011|gb|EEM91034.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 427

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EVPEHDLLVGGFPCQDYSVA 85


>gi|228944657|ref|ZP_04107027.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228815117|gb|EEM61368.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 427

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+K+ +LF G+GG RL LE    + N E  + ++  P     ++   Y   F N  I   
Sbjct: 1  MVKVVELFAGVGGFRLGLEA---NENFEVLWGNQWEPSTKAQHAFNCYATRFENKGIHVN 57

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           DIA+    ++P+HD+L+ GFPCQ +S A
Sbjct: 58 RDIAEAWP-EVPEHDLLVGGFPCQDYSVA 85


>gi|2894387|emb|CAA74997.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
          (C2) [Bacillus pumilus]
          Length = 392

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M+   DLF G GG  L L+       ++   + E++ ++ +T++ NFP    +  +I + 
Sbjct: 1  MITSLDLFSGAGGFTLGLKNA----GIKTIGAIELDRFASETFRKNFPEIPHYQANITEY 56

Query: 60 KTQDI----PDHDVLLAGFPCQPFSQAG 83
             +I       D++  G PCQ FS AG
Sbjct: 57 GDSEIIKLFKGVDIITGGPPCQGFSVAG 84


>gi|317180853|dbj|BAJ58639.1| Type II DNA modification enzyme [Helicobacter pylori F32]
          Length = 312

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D L++GFPCQ FS  G
Sbjct: 58 DFDALISGFPCQAFSING 75


>gi|254779148|ref|YP_003057253.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
 gi|254001059|emb|CAX29005.1| M. Hpy99XI, type II cytosine specific DNA methyltransferase
          [Helicobacter pylori B38]
          Length = 348

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHSHFELIWANDIDKDAILSYQANHKEVQTILCDIVQL 57

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPRVSIDILLGGPPCQSYSTLG 83


>gi|200388503|ref|ZP_03215115.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|199605601|gb|EDZ04146.1| modification methylase HaeIII [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 361

 Score =  101 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +++  LF G GG+   +         +  F++++   + KT    FP+T +   DI++I 
Sbjct: 12 IRVLSLFSGCGGMDFGITSA----GGDIVFANDVVENACKTLGNYFPDTDIRHSDISQI- 66

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           Q  PD D+++ G+PCQ FS AG
Sbjct: 67 -QSFPDVDIVVGGYPCQSFSMAG 88


>gi|209528195|ref|ZP_03276665.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491380|gb|EDZ91765.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 315

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF G GGI     Q           S EINP +  T+Q NFPN   F GD+    
Sbjct: 59  YNFIDLFSGAGGITQGFWQA----GFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFN 114

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
                     P   +++ G PCQ FS AG
Sbjct: 115 PHQWLSKIGSPSVHLVVGGPPCQGFSVAG 143


>gi|188588765|ref|YP_001921868.1| DNA-cytosine methyltransferase [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188499046|gb|ACD52182.1| DNA-cytosine methyltransferase [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 304

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG  L ++        E   + +    ++K Y  NF + +   D+  I  
Sbjct: 1  MKVIDLFCGCGGFSLGMQNA----GFEIVAAYDNWEPAIKVYDENFNHPIYNIDLQNISL 56

Query: 62 QDIP-----DHDVLLAGFPCQPFSQAG 83
          ++I      + DV++ G PCQ +S AG
Sbjct: 57 EEIESMKKLNPDVIIGGPPCQDYSSAG 83


>gi|52841468|ref|YP_095267.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628579|gb|AAU27320.1| modification methylase (Eco47II, Sau96I) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 416

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ L          ++C    EI+   V+T + N P+  +I  DIA + 
Sbjct: 81  FKVVELFAGAGGLALGFHNA----GLDCSMLVEIDKNPVETLRHNCPSWNVIHDDIANVD 136

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            Q I   DV+  GFPCQ FS AG
Sbjct: 137 FQGI-TADVVAGGFPCQAFSYAG 158


>gi|284053792|ref|ZP_06384002.1| cytosine-specific DNA methylase [Arthrospira platensis str. Paraca]
 gi|291570060|dbj|BAI92332.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 418

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF G+GGI     Q           S EINP +  T+Q NFPN   F GD+    
Sbjct: 76  YNFIDLFSGVGGITQGFWQA----GFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFN 131

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
                     P   +++ G PCQ FS AG
Sbjct: 132 PHQWLSKIGSPSVHLVVGGPPCQGFSVAG 160


>gi|217034658|ref|ZP_03440063.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
 gi|216942866|gb|EEC22357.1| hypothetical protein HP9810_901g5 [Helicobacter pylori 98-10]
          Length = 312

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D L++GFPCQ FS  G
Sbjct: 58 DFDALISGFPCQAFSING 75


>gi|124002907|ref|ZP_01687758.1| modification methylase PspPI [Microscilla marina ATCC 23134]
 gi|123991557|gb|EAY30965.1| modification methylase PspPI [Microscilla marina ATCC 23134]
          Length = 353

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++   LF G+GG  L  E+          F+ E NP+     +  +P+T  + DI +   
Sbjct: 1  MRHASLFSGMGGFDLAAER----MGWVNVFTVENNPFCQTILRHYWPDTTHYEDIRQTNF 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T      D+L  GFPCQPFSQAG
Sbjct: 57 TPHYGQIDLLTGGFPCQPFSQAG 79


>gi|119512221|ref|ZP_01631310.1| hypothetical protein N9414_08959 [Nodularia spumigena CCY9414]
 gi|119463119|gb|EAW44067.1| hypothetical protein N9414_08959 [Nodularia spumigena CCY9414]
          Length = 393

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLFCG GGI   L Q           S EI+P +  T++ NFP    F GDI +  
Sbjct: 60  YTFVDLFCGAGGITQGLSQA----GFTPLASVEISPIASATHKKNFPQCHHFCGDIEQFS 115

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
            QD       P+ +V++ G PCQ FS AG
Sbjct: 116 AQDWLQQIGSPEVNVVVGGPPCQGFSVAG 144


>gi|217032692|ref|ZP_03438178.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
 gi|216945622|gb|EEC24273.1| hypothetical protein HPB128_202g26 [Helicobacter pylori B128]
          Length = 211

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LEQ     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLEQC----HLKCVGHAEINHEALRTYELFFKDTHNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D+L++GFPCQ FS  G
Sbjct: 58 DFDMLVSGFPCQAFSING 75


>gi|126659133|ref|ZP_01730272.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
          CCY0110]
 gi|126619540|gb|EAZ90270.1| site-specific DNA-methyltransferase M.NgoVII [Cyanothece sp.
          CCY0110]
          Length = 346

 Score =  101 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAG 73
          + L           +  ++++I+  + +TY+ N  N ++  DIA I  +DIP  D+++ G
Sbjct: 1  MDLGFVNA----GYKIIWANDIDSDACQTYKNNIGNHIVKSDIANINLKDIPKCDIIIGG 56

Query: 74 FPCQPFSQ 81
          FPCQ FS 
Sbjct: 57 FPCQDFSL 64


>gi|170698721|ref|ZP_02889786.1| DNA-cytosine methyltransferase [Burkholderia ambifaria IOP40-10]
 gi|170136346|gb|EDT04609.1| DNA-cytosine methyltransferase [Burkholderia ambifaria IOP40-10]
          Length = 353

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFG 54
            K+   F G GG+ L     F++R         E   + EI+     TY+ N        
Sbjct: 32  FKVVSFFAGCGGLDLGFTGGFSYRGERFAKLPFEIERAYEIDARCKATYEQNIGPHFETC 91

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           D++    + +P+ DVL+ GFPCQ FS  G
Sbjct: 92  DLSTADIESMPNADVLIGGFPCQEFSICG 120


>gi|111220172|ref|YP_710966.1| putative DNA modification methylase [Frankia alni ACN14a]
 gi|111147704|emb|CAJ59362.1| putative DNA Modification methylase (Cytosine-specific
           methyltransferase) [Frankia alni ACN14a]
          Length = 401

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            I DLFCG GG+ L   Q           + + +  S+ T++ANFP   +  DI  +   
Sbjct: 56  TIIDLFCGAGGMSLGFVQA----GFSPILAIDHDQPSIDTHRANFPGDSLCVDIRDV--S 109

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           D P  DV++ G PCQ FS+ G
Sbjct: 110 DFPAADVVIGGPPCQGFSRLG 130


>gi|79835472|gb|ABB52097.1| Mod [Arthrospira platensis]
          Length = 321

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF G+GGI     Q           S EINP +  T+Q NFPN   F GD+    
Sbjct: 76  YNFIDLFSGVGGITQGFWQA----GFNPVASVEINPIASATHQRNFPNCHHFCGDVNDFN 131

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
                     P   +++ G PCQ FS AG
Sbjct: 132 PHQWLSKIGSPSVHLVVGGPPCQGFSVAG 160


>gi|317009105|gb|ADU79685.1| type II DNA modification [Helicobacter pylori India7]
          Length = 348

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|309379756|emb|CBX21532.1| putative DNA cytosine methyltransferase M.NlaII [Neisseria
          lactamica Y92-1009]
          Length = 419

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          +K+ +LF G+GG R+ LE        E  ++++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENANKDL-FETKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   K  ++ D D+++ GFPCQ +S A
Sbjct: 60 IADITNEKFSEM-DADMIVGGFPCQDYSVA 88


>gi|84497092|ref|ZP_00995914.1| cytosine-specific DNA methylase [Janibacter sp. HTCC2649]
 gi|84381980|gb|EAP97862.1| cytosine-specific DNA methylase [Janibacter sp. HTCC2649]
          Length = 499

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 15/93 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFG 54
               DLF GIGG         +H    C + SEI+  + +TY  N+ +        ++  
Sbjct: 35  FTYVDLFAGIGGFH----AMLDHAGGRCVYVSEIDREARQTYVRNWVDPLPTAQQPIVNT 90

Query: 55  DIAKIKTQD----IPDHDVLLAGFPCQPFSQAG 83
           DI      D    +P+HDVL AGFPCQPFS++G
Sbjct: 91  DITIATPDDAPVDVPNHDVLAAGFPCQPFSKSG 123


>gi|322511205|gb|ADX06517.1| putative C-5 cytosine specific DNA methyltransferase [Organic Lake
           phycodnavirus]
          Length = 384

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK+ DLF G G   L  + T     V   F +++  +S   Y  NF + L   D+ ++K 
Sbjct: 72  LKMIDLFAGTGAFTLAFQLT---NAVNVVFGNDMVEHSKNIYDNNFNHKLTLKDLNEVKN 128

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
           +DIP HD+L  GFPCQPFS AG
Sbjct: 129 EDIPSHDILTGGFPCQPFSIAG 150


>gi|310657624|ref|YP_003935345.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
          519]
 gi|308824402|emb|CBH20440.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 326

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNH-------RNVECFFSSEINPYSVKTYQANFPNTLIFGDI 56
          +  LFCG GG  + L   F          ++E  ++++I+  + + ++ NF       DI
Sbjct: 1  MASLFCGCGGTDVGLLGGFKFLDNSYAKNDMEIVYANDIDINACRIFEENFDIMPDNRDI 60

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQ 81
           ++ + ++P+ D+L  GFPCQ FS 
Sbjct: 61 REVASNELPEFDILTGGFPCQSFSI 85


>gi|326204903|ref|ZP_08194756.1| DNA-cytosine methyltransferase [Clostridium papyrosolvens DSM
          2782]
 gi|325984952|gb|EGD45795.1| DNA-cytosine methyltransferase [Clostridium papyrosolvens DSM
          2782]
          Length = 569

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GIGG  +        +     ++SEI  + +   +  FP  L  GDI K+K 
Sbjct: 5  ITVGSLFDGIGGFPM----AGIRQGFIPVWASEIEAFPIAVTKLRFPQMLHVGDITKLKG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +P  DV+  G PCQ  S AG
Sbjct: 61 ETLPQVDVVCGGSPCQDLSVAG 82


>gi|159030022|emb|CAO90403.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 412

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + +LF G GG+ L LE       ++     EIN   V T + N P   +I  DI KIK
Sbjct: 69  YTVIELFAGCGGMALGLENA----GLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIK 124

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
             D  D  D++  GFPCQPFS AG
Sbjct: 125 FSDFRDKIDIVAGGFPCQPFSYAG 148


>gi|294794108|ref|ZP_06759245.1| DNA (cytosine-5-)-methyltransferase [Veillonella sp. 3_1_44]
 gi|294455678|gb|EFG24050.1| DNA (cytosine-5-)-methyltransferase [Veillonella sp. 3_1_44]
          Length = 527

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDI 56
          MLK  DLF G GG+ L  E T      +   ++EIN  +  TY+ N     P   +  DI
Sbjct: 1  MLKTIDLFAGAGGLSLGFEMTGK---FKVLAAAEINKNAQATYKKNIVEGKPTFTMIEDI 57

Query: 57 AKIKTQDIPD----HDVLLAGFPCQPFSQA 82
                ++ +     DV++ G PCQ FS A
Sbjct: 58 NGYDFMELNEKLGGIDVVIGGPPCQGFSNA 87


>gi|308063322|gb|ADO05209.1| type II DNA modification enzyme (methyltransferase) [Helicobacter
          pylori Sat464]
          Length = 348

 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQ N      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDKDAILSYQVNHKEVQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|291571391|dbj|BAI93663.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 390

 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
             DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T
Sbjct: 8  TFIDLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREIST 63

Query: 62 QDIPD------HDVLLAGFPCQPFSQAG 83
          + I +       +++  G PCQ FS  G
Sbjct: 64 EQIRELIGDRHINLICGGPPCQGFSTIG 91


>gi|209523295|ref|ZP_03271851.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209496446|gb|EDZ96745.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 387

 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
             DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T
Sbjct: 9  TFIDLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREIST 64

Query: 62 QDIPD------HDVLLAGFPCQPFSQAG 83
          + I +       +++  G PCQ FS  G
Sbjct: 65 EQIRELIGDRHINLICGGPPCQGFSTIG 92


>gi|79835459|gb|ABB52089.1| Mod [Arthrospira platensis]
          Length = 390

 Score =  100 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
             DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T
Sbjct: 8  TFIDLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREIST 63

Query: 62 QDIPD------HDVLLAGFPCQPFSQAG 83
          + I +       +++  G PCQ FS  G
Sbjct: 64 EQIRELIGDRHINLICGGPPCQGFSTIG 91


>gi|303285300|ref|XP_003061940.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456351|gb|EEH53652.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 341

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFG 54
             ++LF G+GG  + L            F+SE+ P++ +TY AN        P  LI G
Sbjct: 1  FTFSELFAGVGGFGIALRSLGGS----VVFASEMCPHARRTYAANNVVEIGDAPPALIVG 56

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI  +    IP HD+L  GFPCQ FSQ G
Sbjct: 57 DITDVCEDIIPPHDILTGGFPCQSFSQRG 85


>gi|120402107|ref|YP_951936.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119954925|gb|ABM11930.1| DNA-cytosine methyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 386

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            LF G GG+ L  E +   R  +  ++ + +P++V+TYQ N    ++ GD+      ++
Sbjct: 18 VSLFAGCGGMDLGAEAS---RAAKVVWAIDSDPWAVQTYQRNIGKHIVEGDVTTTPVPEV 74

Query: 65 PDHDVLLAGFPCQPFS 80
          P  DVLLAG PCQ +S
Sbjct: 75 P-CDVLLAGPPCQDYS 89


>gi|261837889|gb|ACX97655.1| type II m5C methylase [Helicobacter pylori 51]
          Length = 348

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSM---HPYFELIWANDIDNDAILSYQANHKETQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 DCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|159037548|ref|YP_001536801.1| C-5 cytosine-specific DNA methylase [Salinispora arenicola
          CNS-205]
 gi|157916383|gb|ABV97810.1| C-5 cytosine-specific DNA methylase [Salinispora arenicola
          CNS-205]
          Length = 98

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK----I 59
          + DLF GIGG+ L L++      +      EINPY       ++P      D+       
Sbjct: 8  VLDLFAGIGGLSLGLQRA----GMRIVGHVEINPYCRAVLARHWPEVSCHDDVRTAAAWW 63

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          ++ D P  DV+  G+PCQP S AG
Sbjct: 64 RSTDRPRVDVVAGGYPCQPESLAG 87


>gi|210135280|ref|YP_002301719.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133248|gb|ACJ08239.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 315

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIGG RL LE+     +++C   +EIN  +++TY+  F +T  FGD+ +I   D+P
Sbjct: 2  DFCSGIGGGRLGLERC----HLKCVGHAEINHEALRTYELFFKDTYNFGDLMRINPNDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D D L++GFPCQ FS  G
Sbjct: 58 DFDALISGFPCQAFSING 75


>gi|89892790|ref|YP_516277.1| hypothetical protein DSY0044 [Desulfitobacterium hafniense Y51]
 gi|89332238|dbj|BAE81833.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 721

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GIGG  L   +      +   ++SEI  + ++  +  FP  L  GDI K+  
Sbjct: 1  MTMGSLFDGIGGFPLAAVR----NGIAPVWASEIEAFPIEVTKIRFPEMLHVGDITKLNG 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  DV+  G PCQ  S AG
Sbjct: 57 AKLPPVDVICGGSPCQDLSVAG 78


>gi|161789274|ref|YP_001595753.1| methyl transferase [Vibrio sp. 09022]
 gi|161761495|gb|ABX77139.1| methyl transferase [Vibrio sp. 09022]
          Length = 421

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K    F G  G+ L LE        E   + EI+    +T + N P   + GDI     
Sbjct: 1  MKYLSFFSGALGLDLGLESA----GFEPLLACEIDKDCKETIKTNKPELPVIGDIRDYTA 56

Query: 62 QDIP---------DHDVLLAGFPCQPFSQAG 83
          Q I          + D+++ G PCQ FS AG
Sbjct: 57 QQIREIAGLTQDEEVDLVVGGPPCQAFSTAG 87


>gi|127487|sp|P09795|MTS1_SALIN RecName: Full=Modification methylase SinI; Short=M.SinI; AltName:
           Full=Cytosine-specific methyltransferase SinI
 gi|79032|pir||A32008 site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) - Salmonella sp
 gi|154350|gb|AAA27212.1| modification methylase (M.SinI) [Salmonella enterica subsp.
           enterica serovar Infantis]
          Length = 461

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K    F G  G+ L +EQ       E   +SEI+  +  T  +N PN  + GDI    T+
Sbjct: 76  KALSFFSGAMGLDLGIEQA----GFETLLASEIDKAARDTILSNRPNMALIGDIRDYTTE 131

Query: 63  DI---------PDHDVLLAGFPCQPFSQAG 83
           DI          + D+++ G PCQ FS AG
Sbjct: 132 DILKLAGVSSGNEIDLIMGGPPCQAFSTAG 161


>gi|269121452|ref|YP_003309629.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268615330|gb|ACZ09698.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 372

 Score =  100 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          +K+ +LF GIG  R  LE+   H   +    SEI+ +++ +Y+A   +  T   GDI KI
Sbjct: 1  MKVIELFAGIGSPRKALEKLNIHH--KVIAFSEIDRFAIDSYRAIHNDFLTPNLGDIEKI 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  ++P+ D+L+ G PCQ  S AG
Sbjct: 59 K--ELPETDLLIYGSPCQDISIAG 80


>gi|166363188|ref|YP_001655461.1| cytosine-specific DNA methylase [Microcystis aeruginosa NIES-843]
 gi|166085561|dbj|BAG00269.1| cytosine-specific DNA methylase [Microcystis aeruginosa NIES-843]
          Length = 387

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF G GGI   L Q           S+EI+P +  T+Q NFPN   F GDI    
Sbjct: 59  YNFIDLFSGAGGITQGLLQA----GFNPVASAEISPIASATHQKNFPNCHHFCGDIHDFN 114

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
           TQ+       P   +++ G PCQ FS AG
Sbjct: 115 TQEWLAKIGNPFIHLVVGGPPCQGFSVAG 143


>gi|313891845|ref|ZP_07825450.1| putative modification methylase HhaI [Dialister microaerophilus
          UPII 345-E]
 gi|313119839|gb|EFR43026.1| putative modification methylase HhaI [Dialister microaerophilus
          UPII 345-E]
          Length = 394

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIKT 61
            DLF GIGG    LE+      ++C    E + ++ K+Y+A +    ++   DI K + 
Sbjct: 7  FIDLFSGIGGFHSGLEK----VGMKCVGWCEKDKFAQKSYRALYDTERLWFADDIRKCRG 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P+  +   GFPCQ  S AG
Sbjct: 63 WGMPNATLWSFGFPCQDISIAG 84


>gi|317055417|ref|YP_004103884.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
 gi|315447686|gb|ADU21250.1| DNA-cytosine methyltransferase [Ruminococcus albus 7]
          Length = 543

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K+ DLF G GG+ L   QT   +  E   + E NP   KTY+ N P   + GD+     
Sbjct: 4  YKVVDLFAGAGGLSLGFVQT---KKYEIKVAFENNPNMQKTYRRNHPKVDVRGDVCAADY 60

Query: 62 QDIPD----HDVLLAGFPCQPFSQA 82
           +I       DV++ G PCQ FS A
Sbjct: 61 SEIKRKYGTIDVVIGGPPCQGFSNA 85


>gi|284051619|ref|ZP_06381829.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 443

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
              DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF      +    GD+
Sbjct: 15 FTFVDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPNLGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|79835495|gb|ABB52098.1| Mod [Arthrospira platensis]
          Length = 412

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
              DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF      +    GD+
Sbjct: 15 FTFVDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPNLGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|313667095|gb|ADR72992.1| M2.BspMI [Bacillus sp. M(2010)]
          Length = 353

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          ML   DLF G GG+ L L++       +   S EIN  + +T++ NFP   +F GDI  +
Sbjct: 1  MLTAVDLFSGAGGLLLALKEA----GYQTLLSCEINESACETHKYNFPEIPLFQGDIQNL 56

Query: 60 KTQDI------PDHDVLLAGFPCQPFSQAG 83
              I       D D+++ G PCQ +S  G
Sbjct: 57 TEDKIIEYTKGTDVDLVVGGPPCQGYSMFG 86


>gi|291570812|dbj|BAI93084.1| cytosine-specific DNA methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 443

 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
              DLF GIGG R+ LE    +   +C   SEI P S++ YQ NF      +    GD+
Sbjct: 15 FTFVDLFSGIGGFRIALE----NWGGQCLGYSEIEPNSIQVYQHNFIRYANRDEPNLGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +     P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKFPFTVDLITGGVPCQPWSIAG 96


>gi|134097718|ref|YP_001103379.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006322|ref|ZP_06564295.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133910341|emb|CAM00454.1| C-5 cytosine-specific DNA methylase [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 248

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L +  LF GIGG+ L LE+      +      E++P+  +    ++P      D+     
Sbjct: 4  LTVLSLFAGIGGLELGLERA----GMRVVGQVELDPWCRQVLAHHWPEVPRHDDVRTAVD 59

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
             +Q  PD +++  GFPCQPFS  G
Sbjct: 60 WWHSQPRPDVELVAGGFPCQPFSTYG 85


>gi|208434405|ref|YP_002266071.1| type II DNA modification enzyme [Helicobacter pylori G27]
 gi|208432334|gb|ACI27205.1| type II DNA modification enzyme [Helicobacter pylori G27]
          Length = 348

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---IHPYFELIWANDIDRDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 NCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|56964613|ref|YP_176344.1| site-specific DNA-methyltransferase [Bacillus clausii KSM-K16]
 gi|56910856|dbj|BAD65383.1| site-specific DNA-methyltransferase [Bacillus clausii KSM-K16]
          Length = 286

 Score =  100 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    ++P+  IF DI  +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKILNKHWPDVPIFDDIKTLDK 56

Query: 62 QDIPD--HDV-----LLAGFPCQPFSQAG 83
          + + +   DV     +  GFPCQP+S AG
Sbjct: 57 KALEERGIDVGAIELITGGFPCQPYSVAG 85


>gi|307637157|gb|ADN79607.1| DNA cytosine methyltransferase [Helicobacter pylori 908]
          Length = 165

 Score =  100 bits (250), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|90592696|ref|YP_529611.1| hypothetical protein CDBPCV119_gp60 [Clostridium phage phi CD119]
 gi|71482543|gb|AAX53484.1| hypothetical protein [Clostridium phage phi CD119]
          Length = 260

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 11 IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQDIPDH 67
          IGG RL +E+  +    +C    E + ++  +Y A      +     DI +I+T++IP  
Sbjct: 18 IGGFRLGMEKAGH----KCLGHCEYDKFANLSYNAMHKPKEDEWFERDIREIRTENIPRA 73

Query: 68 DVLLAGFPCQPFSQAG 83
          DV   GFPCQ  S AG
Sbjct: 74 DVWCFGFPCQDISVAG 89


>gi|325972432|ref|YP_004248623.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
 gi|324027670|gb|ADY14429.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
          Length = 402

 Score = 99.8 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
            + +LF G+GG R+ LE +      +  F+++  P     ++   Y  +F   +    D
Sbjct: 5  YNVVELFAGVGGFRVGLEASGV---WKVAFANQWEPGKKNQWAFDCYTKHFSEGIHSNAD 61

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          IAK++ +DIPDH +L+ GFPCQ +S A
Sbjct: 62 IAKVEAKDIPDHSLLVGGFPCQDYSVA 88


>gi|323512819|gb|ADX88273.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2006_D]
 gi|323513047|gb|ADX88500.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2006_C]
          Length = 332

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G+   R+ LE+         +++SEI+  ++K  QAN+P+ +  GD+ K + 
Sbjct: 1  MNVLSLFDGMACCRIALERAGIQVG--NYYASEIDKNAIKVAQANWPDNIQLGDVTKWQE 58

Query: 62 Q--DIPDHDVLLAGFPCQPFSQAG 83
             D    D++  GFPCQ +S AG
Sbjct: 59 WGIDWASIDLVTGGFPCQAWSIAG 82


>gi|323487868|ref|ZP_08093126.1| type II modification methyltransferase [Planococcus donghaensis
          MPA1U2]
 gi|323398602|gb|EGA91390.1| type II modification methyltransferase [Planococcus donghaensis
          MPA1U2]
          Length = 420

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          L++ +LF G+GG RL L++  NH   +  + ++  P      +   Y  NF   +    D
Sbjct: 7  LRVIELFAGVGGFRLGLQKA-NHELFDIVWGNQWEPSRKAQDAFDCYSRNFDTGIHSNED 65

Query: 56 IAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
          I K+      D   D+L+ GFPCQ +S A
Sbjct: 66 ITKVSDDTFHDLRADLLVGGFPCQDYSVA 94


>gi|154795669|gb|ABS86795.1| putative DNA methylase [Helicobacter cetorum]
          Length = 381

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI- 59
          LK+ DLF G+GG     E      N     ++EI+     +Y+ N  NT+ I  DI    
Sbjct: 4  LKVLDLFAGVGGFSKGFENA----NFNIVLANEIDKEIAYSYKENHKNTIMIDSDINDFL 59

Query: 60 ---------KTQDIPDHDVLLAGFPCQPFSQAG 83
                     +   D DV++ G PCQ FS AG
Sbjct: 60 KHYHNLETKDKEKCKDIDVIIGGSPCQGFSMAG 92


>gi|308184264|ref|YP_003928397.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
 gi|308060184|gb|ADO02080.1| type II DNA modification enzyme [Helicobacter pylori SJM180]
          Length = 188

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN      I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHPHFELIWANDIDKDAILSYQANHKEAQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|260591850|ref|ZP_05857308.1| type II DNA modification methyltransferase [Prevotella veroralis
          F0319]
 gi|260536134|gb|EEX18751.1| type II DNA modification methyltransferase [Prevotella veroralis
          F0319]
          Length = 166

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +  LF G GG+                 ++E +P    T++ANFP+T LI GDI  +K
Sbjct: 1  MNLISLFSGAGGLDKGFHNA----GFRTMVANEFDPKICPTFKANFPDTKLIEGDIRNVK 56

Query: 61 TQDIPDHD-VLLAGFPCQPFSQAG 83
            + P H   ++ G PCQ +S+AG
Sbjct: 57 DGEFPKHVAGIIGGPPCQSWSEAG 80


>gi|49476998|ref|YP_035184.1| modification methylase HpaII (cytosine-specific methyltransferase
          HpaII) [Bacillus thuringiensis serovar konkukian str.
          97-27]
 gi|49328554|gb|AAT59200.1| modification methylase HpaII (Cytosine-specific methyltransferase
          HpaII) [Bacillus thuringiensis serovar konkukian str.
          97-27]
          Length = 373

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K  DLF GIGGIR   E T      E   S+EI+ Y+ +TY+  +       D+   + 
Sbjct: 3  YKTLDLFAGIGGIRRGFELTGR---FENVLSAEIDQYACQTYEHLYSENP-KNDVTSAEF 58

Query: 62 QDIPD---HDVLLAGFPCQPFSQAG 83
          ++  +   +DVLL GFPCQ FS AG
Sbjct: 59 KEKVEKLTYDVLLGGFPCQAFSTAG 83


>gi|171911440|ref|ZP_02926910.1| DNA-cytosine methyltransferase [Verrucomicrobium spinosum DSM
          4136]
          Length = 292

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           LF GIGG  L  E+       +C +S EINP +       FP++  F D+ +    ++ 
Sbjct: 17 SLFAGIGGFELGFERA----GFQCSWSVEINPINRAVLADRFPHSRQFEDVRECGAHNLS 72

Query: 66 DHDVLLAGFPCQPFSQAG 83
            DVL AGFPCQ  S AG
Sbjct: 73 PVDVLTAGFPCQDISAAG 90


>gi|154502385|ref|ZP_02039445.1| hypothetical protein RUMGNA_00198 [Ruminococcus gnavus ATCC 29149]
 gi|153797010|gb|EDN79430.1| hypothetical protein RUMGNA_00198 [Ruminococcus gnavus ATCC 29149]
          Length = 215

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 32/110 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------- 47
           +K  D F G+GG R  +E   +    EC    E + ++  +Y +                
Sbjct: 1   MKFIDFFAGVGGFRRGMELAGH----ECVGFCEFDKFATASYTSMHLLTQEQREFLDKMP 56

Query: 48  --------------PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                                DI ++   DIP  D    GFPCQ  S AG
Sbjct: 57  LKQRQKEILKEEYRNGEWYANDIRRVYAGDIPKADCWCFGFPCQDISVAG 106


>gi|325997344|gb|ADZ49552.1| Type II DNA modification enzyme [Helicobacter pylori 2017]
          Length = 159

 Score = 99.8 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|312200922|ref|YP_004020983.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232258|gb|ADP85113.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 384

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            + DLFCG GG+ L   Q       +   S + +  S++T++ANFP   I  DI      
Sbjct: 37  TLIDLFCGAGGMTLGFMQA----GFQPILSIDHDLPSIETHRANFPGMSICTDIR--DFV 90

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           D P  DV++ G PCQ FS+ G
Sbjct: 91  DFPSADVVVGGPPCQGFSRLG 111


>gi|208289|gb|AAA72678.1| Mtase protein (ttg start codon) [synthetic construct]
          Length = 474

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L++  LF GIG     L       + E    SEI+ Y++K+Y A      TL  GDI+K 
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDISKA 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  +IP  D+L +GFPC  FS AG
Sbjct: 62 KKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|9630267|ref|NP_046694.1| modification methylase [Bacillus phage SPBc2]
 gi|16079084|ref|NP_389907.1| SP-beta prophage DNA (cytosine-5-)-methyltransferase [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|221309931|ref|ZP_03591778.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. 168]
 gi|221314254|ref|ZP_03596059.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. NCIB 3610]
 gi|221319176|ref|ZP_03600470.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. JH642]
 gi|221323451|ref|ZP_03604745.1| modification methylase Bsu [Bacillus subtilis subsp. subtilis
          str. SMY]
 gi|56405062|sp|P68585|MTBP_BACSU RecName: Full=Phi-3T prophage-derived modification methylase
          Phi3TI; Short=M.Phi3TI; AltName: Full=Cytosine-specific
          methyltransferase Phi3TI
 gi|56405063|sp|P68586|MTBP_BPPHT RecName: Full=Modification methylase Phi3TI; Short=M.Phi3TI;
          AltName: Full=Cytosine-specific methyltransferase
          Phi3TI
 gi|7433506|pir||T12906 modification methylase - Bacillus subtilis phage SPBc2
 gi|215471|gb|AAA32352.1| methyltransferase (ttg start codon) [Bacillus phage phi3T]
 gi|2634418|emb|CAB13917.1| putative SP-beta prophage DNA (cytosine-5-)-methyltransferase
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025620|gb|AAC13115.1| modification methylase [Bacillus phage SPbeta]
          Length = 443

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L++  LF GIG     L       + E    SEI+ Y++K+Y A      TL  GDI+K 
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDISKA 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  +IP  D+L +GFPC  FS AG
Sbjct: 62 KKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|127440|sp|P24600|MTD1_HERAU RecName: Full=Modification methylase HgiDI; Short=M.HgiDI;
          AltName: Full=Cytosine-specific methyltransferase HgiDI
 gi|43482|emb|CAA38938.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 309

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L   Q       E   + +    ++ TYQ NF + +   D+A+I  
Sbjct: 1  MKTIDLFAGCGGMSLGFMQA----GFEIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDA 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I  H  ++++ G PCQ FS AG
Sbjct: 57 AVSLIKTHSPELIIGGPPCQDFSSAG 82


>gi|296501658|ref|YP_003663358.1| type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
 gi|296322710|gb|ADH05638.1| Type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
          Length = 602

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P    
Sbjct: 23  YKIIDLFAGAGGLSNGFEQTGR---FEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSE 79

Query: 53  FGDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
             DI+ I   +        P   V++ G PCQ FS A
Sbjct: 80  ISDISSIDFNEFIMQKGIDPSETVVIGGPPCQGFSNA 116


>gi|166365618|ref|YP_001657891.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166087991|dbj|BAG02699.1| cytosine-specific methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 412

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + +LF G GG+ L LE       ++     EIN   V T + N P   +I  DI KIK
Sbjct: 69  YTVIELFAGCGGMALGLENA----GLKTQLLVEINQDCVNTLRLNRPQWNVINQDIKKIK 124

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
             +  D  D++  GFPCQPFS AG
Sbjct: 125 FSNFRDKIDIVAGGFPCQPFSYAG 148


>gi|258652183|ref|YP_003201339.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM
          44233]
 gi|258555408|gb|ACV78350.1| DNA-cytosine methyltransferase [Nakamurella multipartita DSM
          44233]
          Length = 467

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
           +  DLF G+GG  + L +        C F++E++P     Y  N+     + DI     
Sbjct: 8  FRFVDLFAGLGGFHVALRELGGA----CVFAAELDPTLNALYAENYQLEA-WKDINDLAS 62

Query: 59 --IKTQDIPDHDVLLAGFPCQPFSQAG 83
            I +Q++PDHDVL AGFPCQPFS+AG
Sbjct: 63 SRIISQEVPDHDVLTAGFPCQPFSKAG 89


>gi|325995748|gb|ADZ51153.1| DNA-cytosine methyltransferase [Helicobacter pylori 2018]
          Length = 160

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN   T  I  DIA++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---VHPYFELIWANDIDKDAILSYQANHKETQTILCDIAQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|254410214|ref|ZP_05023994.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183250|gb|EDX78234.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 392

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
             +LFCGIGG R+  +Q    RN+   ++++  P + + Y+  F    L  GDI ++  
Sbjct: 8  TTVELFCGIGGFRIAADQ----RNIATIWANDRCPKACQVYRDRFGKAQLHQGDIYQL-V 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IP HD+L AGFPCQPFS AG
Sbjct: 63 DEIPPHDLLTAGFPCQPFSSAG 84


>gi|307153788|ref|YP_003889172.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984016|gb|ADN15897.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 424

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   S EI+P    T++ NFP +T+I   + +I  ++
Sbjct: 12 VDLFAGAGGMSLGFEQA----GFDVLASVEIDPIHCATHEYNFPFSTMICRSVTEITARE 67

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          I         D DV+  G PCQ FS  G
Sbjct: 68 IRNLSPIGTQDIDVVFGGPPCQGFSLIG 95


>gi|323650451|gb|ADX97303.1| M.FseI [Frankia sp. Eul1b]
          Length = 374

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            + DLFCG GG+ L   Q       +   S + +  S++T++ANFP   I  DI      
Sbjct: 27  TLIDLFCGAGGMTLGFMQA----GFQPILSIDHDLPSIETHRANFPGMSICTDIR--DFV 80

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           D P  DV++ G PCQ FS+ G
Sbjct: 81  DFPSADVVVGGPPCQGFSRLG 101


>gi|304372874|ref|YP_003856083.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309065|gb|ADM21545.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 413

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
            K  DLF G GG+   L         E   S EI P +V+TY  NF N       +   D
Sbjct: 92  YKFIDLFSGAGGLSCGLVMA----GFEPIASVEIMPDAVETYVYNFQNRKKKEELIETRD 147

Query: 56  IAKIKTQD-----IPD--HDVLLAGFPCQPFSQAG 83
           I  +K ++       D   D+++ GFPCQ FS AG
Sbjct: 148 IRDVKVKEELYNKFKDTDIDLIVGGFPCQGFSMAG 182


>gi|240145320|ref|ZP_04743921.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis
          L1-82]
 gi|257202585|gb|EEV00870.1| DNA (cytosine-5-)-methyltransferase [Roseburia intestinalis
          L1-82]
          Length = 504

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKR----NGIRPVWASEIEKFPMAVTMHRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|326560963|gb|EGE11328.1| type II DNA modification enzyme [Moraxella catarrhalis 7169]
 gi|326575187|gb|EGE25115.1| type II DNA modification enzyme [Moraxella catarrhalis CO72]
          Length = 322

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D   GIG  RL LE       + C   SEI+  S  TYQ  F +    GD+ ++ + D+P
Sbjct: 2  DFCSGIGAGRLGLENA----GMCCVAHSEIDLNSDLTYQLFFNDYSNLGDLTQLNSDDLP 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D DV+LAGFPCQ FS  G
Sbjct: 58 DFDVMLAGFPCQTFSIVG 75


>gi|307699864|ref|ZP_07636915.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
 gi|307614902|gb|EFN94120.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris FB024-16]
          Length = 439

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR----------NVECFFSSEINP-------YSVKTYQ 44
           +++ +LF G+GG RL LE                N    ++++  P       ++ + YQ
Sbjct: 9   IRVAELFAGVGGFRLGLEGWAGDATAPGTLPSAGNFTTIWANQWEPPGTLPRQFAARCYQ 68

Query: 45  ANFP-NTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
           ++F  N++I  DIA++         +IPD D+++ GFPCQ +S A
Sbjct: 69  SHFGENSVINRDIARVMDDAEAGQIEIPDVDLVVGGFPCQDYSVA 113


>gi|291521423|emb|CBK79716.1| DNA-methyltransferase (dcm) [Coprococcus catus GD/7]
          Length = 521

 Score = 99.4 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK  DLF G GG+    E T          ++E N  + KTY  N        DI  I 
Sbjct: 1  MLKTIDLFAGAGGLSYGFESTGE---FLIVAAAENNKNARKTYIENHKG---RNDIRLIP 54

Query: 61 ----------TQDIPDHDVLLAGFPCQPFSQA 82
                      +    DV++ G PCQ FS A
Sbjct: 55 DVRDYDFSALASEFDGIDVVIGGPPCQGFSNA 86


>gi|258514764|ref|YP_003190986.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
 gi|257778469|gb|ACV62363.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
          Length = 703

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF GIGG  L        +     ++SEI P+ ++  +  FP  L  GDI K+K 
Sbjct: 5  LSLGSLFDGIGGFPL----AGVRQGFASVWASEIEPFPIEVTKIRFPEMLHVGDITKLKG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   DV+  G PCQ  S AG
Sbjct: 61 AELAPVDVVCGGSPCQDLSVAG 82


>gi|254673893|emb|CBA09676.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
          alpha275]
          Length = 326

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP+  L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|207092664|ref|ZP_03240451.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_AG0C1]
 gi|207108938|ref|ZP_03243100.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 160

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ D+FCG GG+         H + E  ++++I+  ++ +YQAN     +I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPHFELIWANDIDKDAILSYQANHKEVQIILCDIVQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSIDILLGGPPCQSYSTLG 83


>gi|269964614|ref|ZP_06178852.1| hypothetical protein VMC_02820 [Vibrio alginolyticus 40B]
 gi|269830513|gb|EEZ84734.1| hypothetical protein VMC_02820 [Vibrio alginolyticus 40B]
          Length = 556

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              +LF G GG  L LE+      +EC   ++ +P +  T + N PN  L+ G+I+ + 
Sbjct: 4  FTFVELFAGCGGTALGLEKA----GMECVLLNDSDPRACDTLRTNRPNWNLVEGNISNVD 59

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
             I  H D+L   FP QPFS AG
Sbjct: 60 FSTISTHVDLLSGSFPVQPFSLAG 83


>gi|300118609|ref|ZP_07056347.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus SJ1]
 gi|298723998|gb|EFI64702.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus SJ1]
          Length = 602

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            KI DLF G GG+    EQT      E   + EIN  +V TY  N          P    
Sbjct: 23  YKIIDLFAGAGGLSNGFEQTGR---FEIVGAVEINKEAVATYICNHQNNKDIIIKPKNSE 79

Query: 53  FGDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
             DI+ I   +        P   V++ G PCQ FS A
Sbjct: 80  ISDISSIDFNEFITQKGIDPSETVVIGGPPCQGFSNA 116


>gi|187934831|ref|YP_001884812.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum B str. Eklund 17B]
 gi|187722984|gb|ACD24205.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum B str. Eklund 17B]
          Length = 424

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFP-----NTL 51
            I +LF G+GG R+  E++    + +  ++++  P     ++ + Y+++F      N  
Sbjct: 3  YTICELFAGVGGFRVGFEKS--SSDWKTVWANQWEPSKKVQHAFECYRSHFETSGGINEF 60

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
             DI+++  + IP H VL+ GFPCQ +S A
Sbjct: 61 SNIDISQVPEEHIPGHTVLVGGFPCQDYSVA 91


>gi|295100151|emb|CBK89240.1| DNA-methyltransferase (dcm) [Eubacterium cylindroides T2-87]
          Length = 405

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG--- 54
           I +LF G+GG RL  E+       +  + S+  P     ++ + Y  +F ++       
Sbjct: 4  TICELFAGVGGFRLGFERA--DSGWKTTWFSQWEPGARTQWANQCYVQHFGDSPDINGEF 61

Query: 55 ----DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
              DI+ +    IPDH +L+ GFPCQ +S A
Sbjct: 62 HTCEDISTVDKNAIPDHTLLVGGFPCQDYSVA 93


>gi|217033040|ref|ZP_03438509.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298736593|ref|YP_003729119.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945239|gb|EEC23921.1| hypothetical protein HPB128_193g7 [Helicobacter pylori B128]
 gi|298355783|emb|CBI66655.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 351

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+     +   H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSK---HPYFELIWANDIDKDAILSYQANHKEAQTILCDIVQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    ++LL G PCQ +S  G
Sbjct: 58 HCHNLPCVSINILLGGPPCQSYSTLG 83


>gi|332704951|ref|ZP_08425037.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
 gi|332356303|gb|EGJ35757.1| DNA-methyltransferase (dcm) [Lyngbya majuscula 3L]
          Length = 360

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG+ L           +   + EI+  +V TY+ NFP+T +I  D+  I    
Sbjct: 8  IDLFAGAGGLSLGFHMA----GWQITTAIEIDKSAVSTYRENFPSTNVIRSDVRAIDFTQ 63

Query: 64 IPDHDVLLAGFPCQPFSQ 81
              D+++   PCQPFS 
Sbjct: 64 FQGIDLVVGSPPCQPFSV 81


>gi|18976421|ref|NP_577778.1| cytosine-specific DNA-methyltransferase [Pyrococcus furiosus DSM
          3638]
 gi|18891953|gb|AAL80173.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Pyrococcus furiosus DSM 3638]
          Length = 301

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M  + DLF G GG  L  +        +   + E      KTY  NFP   ++  DI  +
Sbjct: 1  MPSVIDLFAGAGGFSLGFKLA----GFKIISAVENFKPKAKTYSFNFPEVKVYVSDIKAL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            +D P  DV++ G PC+PF+
Sbjct: 57 NPKDFPKADVIIGGPPCEPFT 77


>gi|323487872|ref|ZP_08093130.1| cytosine-specific methyltransferase [Planococcus donghaensis
          MPA1U2]
 gi|323398606|gb|EGA91394.1| cytosine-specific methyltransferase [Planococcus donghaensis
          MPA1U2]
          Length = 367

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          + K   LF G GG+ +  +       +   +++EI+  +  TY+ N P T++  GD+   
Sbjct: 4  IYKGISLFTGAGGMDVGFKSA----GIHVEWANEIDKDACNTYETNNPETILAKGDLRNY 59

Query: 60 --KTQDIPDHDVLLAGFPCQPFSQAG 83
              ++  D D++  G PCQ FS AG
Sbjct: 60 IETLKEHRDIDIVFGGPPCQGFSVAG 85


>gi|218441171|ref|YP_002379500.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218173899|gb|ACK72632.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 415

 Score = 99.1 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + EINP    TY+ NFP  T+I   +A I+ ++
Sbjct: 13 VDLFAGAGGMSLGFEQA----GFDVLAAVEINPIHCATYEYNFPFWTIICRSVADIRGEE 68

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          I         + DV+  G PCQ FS  G
Sbjct: 69 IRQLSALKNQEIDVVFGGPPCQGFSLMG 96


>gi|270157659|ref|ZP_06186316.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
 gi|269989684|gb|EEZ95938.1| DNA-cytosine methyltransferase family protein [Legionella
           longbeachae D-4968]
          Length = 414

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            K+ +LF G GG+ L          + C    EI+ + V+T + N P+  +I  DIA + 
Sbjct: 81  FKVVELFAGAGGLALGFHNA----GLNCELLVEIDKFPVETLRKNCPSWNVICDDIANVN 136

Query: 61  TQDIPDHDVLLAGFPCQPFSQAG 83
            + +   D++  GFPCQ FS AG
Sbjct: 137 FRGV-KADIVAGGFPCQAFSYAG 158


>gi|218895988|ref|YP_002444399.1| cytosine-specific methyltransferase NlaX [Bacillus cereus G9842]
 gi|218540614|gb|ACK93008.1| cytosine-specific methyltransferase NlaX [Bacillus cereus G9842]
          Length = 348

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 1  MLKITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
          +LK  DLF GIGG R  L   +  +   E     EI       Y   F     +I  D+ 
Sbjct: 2  ILKYLDLFAGIGGFRQALINSSLKNVKFEPIGYCEIEKKCQLVYNEIFGTDGEVIVDDVK 61

Query: 58 KIKTQD---------IPDHDVLLAGFPCQPFSQAG 83
          KI + D         +P+ D+LL GFPCQPFS  G
Sbjct: 62 KIFSPDMVNVDGSKKLPEFDLLLGGFPCQPFSNVG 96


>gi|312142618|ref|YP_003994064.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311903269|gb|ADQ13710.1| DNA-cytosine methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 406

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG--- 54
           + +LF G+GG RL LE++      +  + ++  P     ++ + Y  NF          
Sbjct: 4  TVCELFAGVGGFRLGLEKSSEE--WKTVWMNQWEPTRKSQWAYECYIENFGKDKAINLFS 61

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI+++ T  IPDH++L+ GFPCQ +S A
Sbjct: 62 NTDISEVDTSVIPDHNLLVGGFPCQDYSVA 91


>gi|229183237|ref|ZP_04310467.1| Site-specific DNA-methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600376|gb|EEK57966.1| Site-specific DNA-methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 592

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P    
Sbjct: 13  YKIIDLFAGAGGLSNGFEQTGR---FEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSE 69

Query: 53  FGDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
             DI+ I   +        P   V++ G PCQ FS A
Sbjct: 70  ISDISSINFHEFMMQKGIDPSETVVIGGPPCQGFSNA 106


>gi|266620546|ref|ZP_06113481.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288867840|gb|EFD00139.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 521

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          MLK  DLF G GG+    E T          ++E N  + KTY  N        DI  I 
Sbjct: 1  MLKTIDLFAGAGGLSYGFESTGE---FLIVAAAENNKNARKTYIENHKG---RNDIRMIP 54

Query: 61 ----------TQDIPDHDVLLAGFPCQPFSQA 82
                      +    DV++ G PCQ FS A
Sbjct: 55 DVRGYDFSALASEFDGIDVVIGGPPCQGFSNA 86


>gi|1098476|gb|AAC37047.1| orf; homologous to Haemophilus parahaemolyticus hphIM(C)
          Accession Number M24625 [Neisseria meningitidis]
          Length = 276

 Score = 98.7 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP+  L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|303237411|ref|ZP_07323977.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302482361|gb|EFL45390.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 383

 Score = 98.7 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L  E+   H        +E+N  + +T ++N PN  ++  DI  + 
Sbjct: 44  FTSIELFAGAGGLALGFEKAGFHH----VMLNELNREACETLRSNRPNWNVLEADIHNVD 99

Query: 61  TQDI-PDHDVLLAGFPCQPFSQAG 83
                   D+L  GFPCQ FS AG
Sbjct: 100 FSKWHNQIDLLTGGFPCQAFSYAG 123


>gi|41019146|sp|P09389|MTBB_BPSPB RecName: Full=Modification methylase SPBetaI; Short=M.SPBetaI;
          AltName: Full=Cytosine-specific methyltransferase
          SPBetaI
          Length = 257

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L++  LF GIG     L       + E    SEI+ Y++K+Y A      TL  GDI+K 
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDISKA 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  +IP  D+L +GFPC  FS AG
Sbjct: 62 KKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|229056682|ref|ZP_04196086.1| Site-specific DNA-methyltransferase [Bacillus cereus AH603]
 gi|228720618|gb|EEL72179.1| Site-specific DNA-methyltransferase [Bacillus cereus AH603]
          Length = 602

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            KI DLF G GG+    EQT      E   + EIN  +V+TY  N          P    
Sbjct: 23  YKIIDLFAGAGGLSNGFEQTGK---FEIVGAVEINKEAVETYICNHQNNKEIIIKPKNSE 79

Query: 53  FGDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
             DI+ I  Q         P   V++ G PCQ FS A
Sbjct: 80  ISDISSINFQKFMMQKGIDPSETVVIGGPPCQGFSNA 116


>gi|229585366|ref|YP_002843868.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.27]
 gi|228020416|gb|ACP55823.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.27]
          Length = 325

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K+ DLF G GG  L  ++      +E   + +IN  + +TY  NFPNT+ I  DI +I 
Sbjct: 4  IKVIDLFSGAGGFSLGFKK----LGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDI-----PDHDVLLAGFPCQPFSQA 82
           ++I      + DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|229579730|ref|YP_002838129.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.G.57.14]
 gi|228010445|gb|ACP46207.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.G.57.14]
          Length = 325

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K+ DLF G GG  L  ++      +E   + +IN  + +TY  NFPNT+ I  DI +I 
Sbjct: 4  IKVIDLFSGAGGFSLGFKK----LGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDI-----PDHDVLLAGFPCQPFSQA 82
           ++I      + DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|304388871|ref|ZP_07370921.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|302028149|gb|ADK90963.1| unknown [Neisseria meningitidis]
 gi|304337164|gb|EFM03348.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
          13091]
 gi|316985914|gb|EFV64853.1| modification methylase HphIA [Neisseria meningitidis H44/76]
 gi|325143322|gb|EGC65656.1| cytosine-specificmethyltransferase HphIA [Neisseria meningitidis
          961-5945]
          Length = 276

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP+  L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|227828127|ref|YP_002829907.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.14.25]
 gi|227830834|ref|YP_002832614.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.S.2.15]
 gi|229581602|ref|YP_002840001.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.N.15.51]
 gi|238620327|ref|YP_002915153.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.4]
 gi|284998349|ref|YP_003420117.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.D.8.5]
 gi|227457282|gb|ACP35969.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.S.2.15]
 gi|227459923|gb|ACP38609.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.14.25]
 gi|228012318|gb|ACP48079.1| DNA-cytosine methyltransferase [Sulfolobus islandicus Y.N.15.51]
 gi|238381397|gb|ACR42485.1| DNA-cytosine methyltransferase [Sulfolobus islandicus M.16.4]
 gi|284446245|gb|ADB87747.1| DNA-cytosine methyltransferase [Sulfolobus islandicus L.D.8.5]
          Length = 325

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K+ DLF G GG  L  ++      +E   + +IN  + +TY  NFPNT+ I  DI +I 
Sbjct: 4  IKVIDLFSGAGGFSLGFKK----LGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDI-----PDHDVLLAGFPCQPFSQA 82
           ++I      + DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|157953702|ref|YP_001498593.1| hypothetical protein AR158_C512R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068350|gb|ABU44057.1| hypothetical protein AR158_C512R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 352

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----D 55
          ++K   LF G GG  L ++       +E     E +  ++ T++ NF      G     D
Sbjct: 4  IMKAISLFAGAGGDSLGMKMA----GIEVVAFLENDTDAIYTHKRNFDKCHHIGSSVGGD 59

Query: 56 IAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
          I KI  ++     D D++ AGFPCQ FS AG
Sbjct: 60 ITKIPDEEFKKYGDVDIIFAGFPCQGFSNAG 90


>gi|304390602|ref|ZP_07372555.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326358|gb|EFL93603.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 321

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++ DLF G GG+ L  EQ       +   + +    +V  Y+ NF + +   D+A  + 
Sbjct: 25  MRVIDLFSGCGGMSLGFEQG----GYQVVAAFDNWQPAVDIYKENFQHPIHNIDLATDEA 80

Query: 62  QDI---PDHDVLLAGFPCQPFSQAG 83
            +I      DV++ G PCQ +S AG
Sbjct: 81  LEIIEQAKPDVIIGGPPCQDYSIAG 105


>gi|283782595|ref|YP_003373349.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
 gi|283441341|gb|ADB13807.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis 409-05]
          Length = 424

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQ----------TFNHRNVECFFSSEINP-------YSVKTYQ 44
           +K+ +LF G+GG RL LE                  +  ++++  P       ++ + Y+
Sbjct: 5   IKVAELFAGVGGFRLGLEGYTPSEENNFTAEPAGPFKTVWANQWEPAGQESKQFAWRCYE 64

Query: 45  ANFP-NTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA++  +      DIP+ D+L+ GFPCQ +S A
Sbjct: 65  KRFGKGSCVNEDIAEVLKKFEHGECDIPNFDMLVGGFPCQDYSVA 109


>gi|15894780|ref|NP_348129.1| DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|15024448|gb|AAK79469.1|AE007660_12 DNA-methyltransferase (cytosine-specific), ortholog of BSP6I
           Bsubtilis [Clostridium acetobutylicum ATCC 824]
 gi|325508918|gb|ADZ20554.1| DNA-methyltransferase (cytosine-specific) [Clostridium
           acetobutylicum EA 2018]
          Length = 415

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 47/130 (36%), Gaps = 48/130 (36%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI- 59
             +  LF G+GGI L  +   +        +++EI+ Y+ +TY+ NF + LI GDI KI 
Sbjct: 6   FTVGSLFAGVGGICLGFKTAEYRGLGYNLIWANEIDEYAGETYRHNFDHNLIAGDIEKIV 65

Query: 60  ---------------------KTQDIP-------------------------DHDVLLAG 73
                                  + I                            DVL  G
Sbjct: 66  DLNIIQSEQNRYINIMNEVATDEERIKYKVLIEKCEEEKQIYREKQKQILSSKIDVLNGG 125

Query: 74  FPCQPFSQAG 83
           FPCQ FS AG
Sbjct: 126 FPCQAFSIAG 135


>gi|291561285|emb|CBL40084.1| DNA-methyltransferase (dcm) [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQ--ANFPNTLIFGDI 56
          M++   LF GIG      E+  ++     E     E++ Y+ K Y    + P ++  GDI
Sbjct: 1  MIRYLSLFSGIG----AFEKALDNLGIPYELLAYCEVDKYASKAYSLLHHVPESMNLGDI 56

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           K+  + +P D D+L  GFPCQ  S AG
Sbjct: 57 TKVDEKALPTDIDLLTYGFPCQDISIAG 84


>gi|210134686|ref|YP_002301125.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132654|gb|ACJ07645.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 160

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+     +   H + E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFSK---HPHFELIWANDIDKDAILSYQANHKEAQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|323475189|gb|ADX85795.1| DNA-cytosine methyltransferase [Sulfolobus islandicus REY15A]
 gi|323477921|gb|ADX83159.1| DNA-cytosine methyltransferase [Sulfolobus islandicus HVE10/4]
          Length = 325

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K+ DLF G GG  L  ++      +E   + +IN  + +TY  NFPNT+ I  DI +I 
Sbjct: 4  IKVIDLFSGAGGFSLGFKK----LGIEPKLAIDINHAAARTYSLNFPNTIVIEDDIRQIS 59

Query: 61 TQDI-----PDHDVLLAGFPCQPFSQA 82
           ++I      + DV++ G PC+ ++ A
Sbjct: 60 GKEILKNVGDEIDVIIGGPPCEGYTAA 86


>gi|307155289|ref|YP_003890673.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306985517|gb|ADN17398.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 387

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLF G GGI     Q      ++   S EINP +  TY  NFP    F GDIA+  
Sbjct: 70  YTFVDLFAGAGGITQGFVQA----GLKPIASLEINPIASATYVKNFPQCHHFCGDIAEFL 125

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
             +       P+  +++ G PCQ FS AG
Sbjct: 126 PINWLNQIGSPEIHLVVGGPPCQGFSVAG 154


>gi|325069077|ref|ZP_08127750.1| cytosine-specific DNA modification methyltransferase [Actinomyces
          oris K20]
          Length = 448

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
             TDLF GIGG    L         +C ++ EI+  + + Y+ N+      GDI  +  
Sbjct: 5  FTYTDLFAGIGGFHAALS----GMGGQCTYAVEIDKDAARIYEQNWG-VGALGDIT-VDA 58

Query: 62 QD------IPDHDVLLAGFPCQPFSQAG 83
           +      I  HD+L AGFPCQPFS++G
Sbjct: 59 GEHGVSERIQPHDILAAGFPCQPFSKSG 86


>gi|157952870|ref|YP_001497762.1| hypothetical protein NY2A_B566R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123097|gb|ABT14965.1| hypothetical protein NY2A_B566R [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 349

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----DI 56
           +K   LF G GG  L ++       +E     E +  ++ T++ NF      G     DI
Sbjct: 19  MKAISLFAGAGGDSLGMKMA----GIEVVAFLENDTDAIYTHKRNFDKCHHIGSSVGGDI 74

Query: 57  AKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
            KI  ++     D D++ AGFPCQ FS AG
Sbjct: 75  TKIPDEEFKKYGDVDIIFAGFPCQGFSNAG 104


>gi|291336805|gb|ADD96340.1| DNA cytosine 5 methyltransferase [uncultured organism
          MedDCM-OCT-S08-C700]
          Length = 287

 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ D F GIGG     E+       E     E +PY  K    ++PN  I  DI   + 
Sbjct: 4  LRLLDTFSGIGGFSYAAEKLVG--GYETTQFVENDPYCQKVLNKHWPNVPIHDDIETYRA 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++   DV+  GFPCQ  S AG
Sbjct: 62 -ELYSADVICGGFPCQDISAAG 82


>gi|319956919|ref|YP_004168182.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
          16511]
 gi|319419323|gb|ADV46433.1| DNA-cytosine methyltransferase [Nitratifractor salsuginis DSM
          16511]
          Length = 394

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIG   +     F     E  FS EI+ ++ K+Y A +    ++ D+  +  
Sbjct: 1  MKIATLFSGIGAPEMAARHIFPSH--EIVFSCEIDKFARKSYAAIYGEEPLYHDVHNVPA 58

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
               H D+L+ G PCQ FS AG
Sbjct: 59 IFYQGHIDLLVGGSPCQSFSVAG 81


>gi|315650298|ref|ZP_07903370.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487409|gb|EFU77719.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 644

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G GG  L              ++SEI P+ +      FP  L  GDI K+  
Sbjct: 16 MKLGALFSGSGGFEL----AGQLVGFTPVWASEIEPFPILVTTKRFPRMLHLGDIKKLDG 71

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  D++  G PCQ  S AG
Sbjct: 72 AKMPKVDIITGGSPCQDMSIAG 93


>gi|8489198|gb|AAF75616.1|AF216814_7 5-methylcytosine methyltransferase [Lactococcus lactis subsp.
          lactis bv. diacetylactis]
 gi|3702801|gb|AAC77904.1| LlaKR2I methylase enzyme [Lactococcus lactis]
          Length = 420

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFGDI 56
          +K+ +LF G+GG R+ LE    +   +  +S++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENADKNL-FKTKWSNQWEPSRKSQDAFEVYDYHFPNSENI--- 56

Query: 57 AKIKTQDIP-------DHDVLLAGFPCQPFSQA 82
            I   DIP       D D+++ GFPCQ +S A
Sbjct: 57 -NISISDIPDEKFAEMDADIIVGGFPCQDYSVA 88


>gi|300863842|ref|ZP_07108767.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
 gi|300338190|emb|CBN53913.1| Cytosine-specific methyltransferase (fragment) [Oscillatoria sp.
           PCC 6506]
          Length = 237

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLFCG GG+   L Q       +   S E NP +  T+Q NFP    F GDI    
Sbjct: 60  YTFVDLFCGAGGMTQGLVQA----GFQPVASVEANPIASATHQKNFPKCHHFCGDIKSFS 115

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
            Q        P   +++ G PCQ FS AG
Sbjct: 116 PQQWLSQINSPKVHLVVGGPPCQGFSVAG 144


>gi|325133150|gb|EGC55821.1| modification methylase HphIA [Neisseria meningitidis M6190]
 gi|325138766|gb|EGC61318.1| modification methylase HphIA [Neisseria meningitidis ES14902]
 gi|325197365|gb|ADY92821.1| modification methylase HphIA [Neisseria meningitidis G2136]
 gi|325203202|gb|ADY98655.1| modification methylase HphIA [Neisseria meningitidis M01-240355]
          Length = 332

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP+  L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLINCLNGQAVDLIIGGPPCQGFSMAG 89


>gi|20094956|ref|NP_614803.1| site-specific DNA methylase [Methanopyrus kandleri AV19]
 gi|19888204|gb|AAM02733.1| Site-specific DNA methylase [Methanopyrus kandleri AV19]
          Length = 315

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+ DLFCG GG     ++       +     E NP    TY+ NFP   +I  DI ++ +
Sbjct: 4  KVVDLFCGAGGFSRGFKEA----GFKILGGVENNPAPAATYRENFPEAEVIERDIQRVDS 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQA 82
          ++I D     DV++ G PC+PF+ A
Sbjct: 60 EEIVDELGEPDVIIGGPPCEPFTAA 84


>gi|225375653|ref|ZP_03752874.1| hypothetical protein ROSEINA2194_01278 [Roseburia inulinivorans
          DSM 16841]
 gi|225212510|gb|EEG94864.1| hypothetical protein ROSEINA2194_01278 [Roseburia inulinivorans
          DSM 16841]
          Length = 473

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKR----NGIRPVWASEIEKFPMAVTMYRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|205360554|ref|ZP_02684441.2| modification methylase DdeI [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|205348823|gb|EDZ35454.1| modification methylase DdeI [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
          Length = 394

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          K+ D F G GG  L           E   + E++ ++ +T++ N P +L I  DI++   
Sbjct: 5  KVLDTFAGAGGFSLGFHMA----GAEIIGAIEVDSWATETFKFNHPESLVIKKDISQFSD 60

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          ++I         D++L G PCQ FS A
Sbjct: 61 EEILETFKNNKPDIILGGPPCQGFSIA 87


>gi|295104578|emb|CBL02122.1| DNA-methyltransferase (dcm) [Faecalibacterium prausnitzii SL3/3]
          Length = 293

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 11 IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDV 69
          IGG    L + ++    +  +++EINP + KTY+ NF N ++ GDI++ K   IP   D+
Sbjct: 6  IGGFDF-LGKHYSKTGFKIIWANEINPAACKTYRDNFGNYIVEGDISE-KINTIPASADI 63

Query: 70 LLAGFPCQPFSQAG 83
          ++ GFPCQ  S  G
Sbjct: 64 VVGGFPCQDISING 77


>gi|291537886|emb|CBL10997.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 473

 Score = 97.9 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+  LF GIGG  L  ++      +   ++SEI  + +      FP     GDI K+  +
Sbjct: 4  KLGSLFDGIGGFPLAAKR----NGIRPVWASEIEKFPMAVTMYRFPEMKHMGDITKLHGE 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  DV+  G PCQ  S AG
Sbjct: 60 NLPVVDVIAGGSPCQDLSIAG 80


>gi|226324849|ref|ZP_03800367.1| hypothetical protein COPCOM_02636 [Coprococcus comes ATCC 27758]
 gi|225207297|gb|EEG89651.1| hypothetical protein COPCOM_02636 [Coprococcus comes ATCC 27758]
          Length = 473

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 32/109 (29%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------------- 47
           K  D F GIGG R  +E   +    EC    E + ++  +Y +                 
Sbjct: 4   KFIDWFAGIGGFRRGMELAGH----ECVGFCEFDKFATASYISMHLLTDEQRKKLNELPQ 59

Query: 48  -------------PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                               D+ ++   DIP  D    GFPCQ  S AG
Sbjct: 60  KKRQKEILKDEYRNGEWYANDVRRVCADDIPKADCWCFGFPCQDISVAG 108


>gi|240142445|ref|YP_002966955.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
 gi|240012389|gb|ACS43614.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
          Length = 335

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L + DLF GIGGI L LE+             E      +  + ++P+  I  D+  +  
Sbjct: 8  LTVLDLFSGIGGISLGLERAGP---FRTIAFCEALEARRRILRRHWPDVPIHDDVRTLDG 64

Query: 62 QDI-----PDHDVLLAGFPCQPFSQAG 83
          +          DV+  GFPCQ  S AG
Sbjct: 65 RSFGAGSSRSVDVICGGFPCQDISLAG 91


>gi|310819714|ref|YP_003952072.1| cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
 gi|309392786|gb|ADO70245.1| Cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
          Length = 421

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 13/90 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+  LF G GG+    E        E   + E++    +T + N P+ T++  DI K++ 
Sbjct: 5  KVISLFSGAGGLDYGFEAA----GFETAVALEMDHACCETLRENRPSWTVMETDILKVRG 60

Query: 62 QD--------IPDHDVLLAGFPCQPFSQAG 83
          +D        I + DVL+ G PCQPFS+AG
Sbjct: 61 KDVLKAAGLKIGEADVLIGGPPCQPFSKAG 90


>gi|240142441|ref|YP_002966951.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
          AM1]
 gi|240012385|gb|ACS43610.1| Site-specific DNA-methyltransferase [Methylobacterium extorquens
          AM1]
          Length = 463

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG  L  +            S EI+P +  T+ ANFP  + F D       +
Sbjct: 13 VLDLFSGCGGFSLGFQAA----GFRIAGSVEIDPSARATHAANFPEAVHFDDATTADPAE 68

Query: 64 I------PDHDVLLAGFPCQPFSQAG 83
          +          VL+ G PCQ +++ G
Sbjct: 69 VGACLAGAPFTVLVGGPPCQAYARVG 94


>gi|294788934|ref|ZP_06754174.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
 gi|294483036|gb|EFG30723.1| modification methylase HphIA [Simonsiella muelleri ATCC 29453]
          Length = 328

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L   DLF G GG  L  ++           S E+     +TY+ NFP   +   D+  + 
Sbjct: 3  LTYIDLFSGAGGFSLGFDRA----GFRQLLSVELEKTYCETYRTNFPKHHVLQTDLTTLS 58

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           + I +       DV++ G PCQ FS AG
Sbjct: 59 NEKILNELNGQAVDVVIGGPPCQGFSMAG 87


>gi|108562885|ref|YP_627201.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
 gi|107836658|gb|ABF84527.1| type II DNA modification enzyme [Helicobacter pylori HPAG1]
          Length = 160

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K+ D+FCG GG+         H   E  ++++I+  ++ +YQAN      I  DI ++
Sbjct: 1  MYKVADIFCGAGGLSYGFS---THPYFELIWANDIDKDAILSYQANHKEAQTILCDIMQL 57

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
             ++P    D+LL G PCQ +S  G
Sbjct: 58 HCHNLPCVPIDILLGGPPCQSYSTLG 83


>gi|170077805|ref|YP_001734443.1| Type II cytosine-5 DNA methyltransferase [Synechococcus sp. PCC
          7002]
 gi|462645|sp|P34882|MTAA_SYNP2 RecName: Full=Modification methylase AquI subunit alpha;
          Short=M.AquI subunit alpha; Short=M.AquiA; AltName:
          Full=Cytosine-specific methyltransferase AquI subunit
          alpha
 gi|2126509|pir||I39659 modification methylase AquI, alpha protein - Synechococcus sp.
          (PCC 7002)
 gi|142180|gb|AAA22067.1| M.AquI alpha protein [Synechococcus sp. PCC 7002]
 gi|169885474|gb|ACA99187.1| DNA-cytosine methyltransferase [Synechococcus sp. PCC 7002]
          Length = 248

 Score = 97.5 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
          K+  LF G GG+ +               + E +P    T + N P+T  I GDI  I T
Sbjct: 4  KLISLFSGAGGMDIGFHAA----GFSTAVAVEQDPSCCNTLRLNMPDTPVIEGDITSITT 59

Query: 62 QDIPDH--------DVLLAGFPCQPFSQAG 83
          Q I +         D+++ G PCQ FS AG
Sbjct: 60 QVILEAAKVNPLEIDLVIGGPPCQSFSLAG 89


>gi|197303495|ref|ZP_03168534.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
          29176]
 gi|197297493|gb|EDY32054.1| hypothetical protein RUMLAC_02217 [Ruminococcus lactaris ATCC
          29176]
          Length = 496

 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 13/89 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + K  DL  GIGGIR   E T      E   S+EI+PY+  TY+  F           + 
Sbjct: 2  IYKTIDLCAGIGGIRRGFEMTGL---FENVLSAEIDPYAALTYKHLFGEDPTN----DLT 54

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
          ++D        ++DVLLAGFPCQ FS+ G
Sbjct: 55 SEDFKNEVVNTEYDVLLAGFPCQAFSRVG 83


>gi|167746072|ref|ZP_02418199.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
 gi|167654587|gb|EDR98716.1| hypothetical protein ANACAC_00767 [Anaerostipes caccae DSM 14662]
          Length = 476

 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL----IFGDIAKI 59
           + DLFCG GG+ L   Q           +++I P  V TY  N P+T     I GDI  +
Sbjct: 108 MIDLFCGAGGLSLGFTQ----NGFITSLANDIEPCCVDTYAHNHPDTPRENIILGDINNV 163

Query: 60  -----KTQDIPDHDVLLAGFPCQPFSQA 82
                + Q     DV++ G PCQ FS A
Sbjct: 164 IENITELQRFSSVDVVVGGPPCQGFSMA 191


>gi|89097277|ref|ZP_01170167.1| hypothetical protein B14911_16900 [Bacillus sp. NRRL B-14911]
 gi|89088100|gb|EAR67211.1| hypothetical protein B14911_16900 [Bacillus sp. NRRL B-14911]
          Length = 416

 Score = 97.5 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          L + +LF G+GG R+ LE+   +   +  ++++  P      +   Y ++FP+++    D
Sbjct: 5  LNVVELFAGVGGFRVGLERADKNF-FDTVWANQWEPSKKAQDAFNCYNSHFPSSVNCNDD 63

Query: 56 IAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
          I K+  +   D   D+L+ GFPCQ +S A
Sbjct: 64 IGKVSNKTFEDMNIDLLVGGFPCQDYSVA 92


>gi|2894386|emb|CAA74996.1| Bpu10I (5m)cytosine-specific DNA modification methyltransferase
          (C1) [Bacillus pumilus]
          Length = 398

 Score = 97.1 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 2  LKI-------TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIF 53
          +K         DLF G GG+ L  E        E   + EI+ ++V TY+ N  N  +I 
Sbjct: 1  MKFPNKKVSPIDLFAGAGGMSLGFENA----GFEIPLAVEIDDWAVDTYRKNRENSNVIK 56

Query: 54 GDIAKIK---TQDIPDHDVLLAGFPCQPFSQ 81
           DI +I     +     D ++ G PCQ FS 
Sbjct: 57 NDILEIDNAFFKQFSGIDAVIGGPPCQGFSI 87


>gi|240114016|ref|ZP_04728506.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae MS11]
          Length = 333

 Score = 97.1 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPRHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLTNCLNGQSVDLVIGGPPCQGFSMAG 89


>gi|77918034|ref|YP_355849.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
          2380]
 gi|77544117|gb|ABA87679.1| C-5 cytosine-specific DNA methylase [Pelobacter carbinolicus DSM
          2380]
          Length = 405

 Score = 97.1 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          MLK   L+ G GG+ L LE        E   + EI+ ++ +T   N PN   I  DI  +
Sbjct: 1  MLKTISLYTGAGGLDLGLEAA----GFETTVAVEIDKWACQTLCHNRPNWNPIEEDIHNV 56

Query: 60 KTQDIP--------DHDVLLAGFPCQPFSQA 82
              +         +  +L+ G PCQPFS+A
Sbjct: 57 SCATLSEIGGFNSGEASLLIGGPPCQPFSKA 87


>gi|332710136|ref|ZP_08430089.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332351094|gb|EGJ30681.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 370

 Score = 97.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L  T LF G GG+ +  E        +  +S++I+ +SVKT + N P   +   DI ++ 
Sbjct: 3  LSFTSLFSGAGGLDIGFEMA----GFQHLYSTDIDTWSVKTLRNNRPEWDVEEADIRELS 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D+PD DV+LAG PCQ FS  G
Sbjct: 59 ERDLPDSDVILAGVPCQGFSLGG 81


>gi|59802210|ref|YP_208922.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA 1090]
 gi|239997871|ref|ZP_04717795.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae 35/02]
 gi|240015148|ref|ZP_04722061.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae DGI18]
 gi|240017596|ref|ZP_04724136.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA6140]
 gi|240081740|ref|ZP_04726283.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA19]
 gi|240116752|ref|ZP_04730814.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID18]
 gi|240118973|ref|ZP_04733035.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID1]
 gi|240122219|ref|ZP_04735181.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID24-1]
 gi|240124509|ref|ZP_04737465.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae PID332]
 gi|240124618|ref|ZP_04737504.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae SK-92-679]
 gi|240129189|ref|ZP_04741850.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae SK-93-1035]
 gi|260439487|ref|ZP_05793303.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae DGI2]
 gi|268593717|ref|ZP_06127884.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597838|ref|ZP_06132005.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268683185|ref|ZP_06150047.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          SK-92-679]
 gi|291042721|ref|ZP_06568462.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398253|ref|ZP_06642458.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|2330911|gb|AAC45838.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae]
 gi|59719105|gb|AAW90510.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae FA 1090]
 gi|268547106|gb|EEZ42524.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551626|gb|EEZ46645.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268623469|gb|EEZ55869.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          SK-92-679]
 gi|291013155|gb|EFE05121.1| 5-methylcytosine methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611516|gb|EFF40586.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317165321|gb|ADV08862.1| putative 5-methylcytosine methyltransferase [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 333

 Score = 97.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG+ L  EQ       +   S E+     +TY+ NFP + L+  D+  + 
Sbjct: 5  LTYIDLFSGAGGLSLGFEQA----GFQQLLSVEMESDYCQTYRTNFPRHQLLQKDLTTLT 60

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           QD+ +       D+++ G PCQ FS AG
Sbjct: 61 EQDLTNCLNGQSVDLVIGGPPCQGFSMAG 89


>gi|119513855|ref|ZP_01632813.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
          spumigena CCY9414]
 gi|119461493|gb|EAW42572.1| DNA methylase, C-5 cytosine-specific family protein [Nodularia
          spumigena CCY9414]
          Length = 318

 Score = 97.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          KI DLF G GG+    +        E   + +I+  ++ TY+ N+PNT +I  DI ++  
Sbjct: 4  KIIDLFAGAGGLTTGFDM----EGFESLCAIDIDAKALATYKHNYPNTKIIHQDIRQVNP 59

Query: 62 QDIP--------DHDVLLAGFPCQPFSQ 81
           D+         +  VL+ G PCQ FS+
Sbjct: 60 SDLRLALGLRQEELTVLIGGPPCQGFSR 87


>gi|294673411|ref|YP_003574027.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
          23]
 gi|294473101|gb|ADE82490.1| DNA methylase, C-5 cytosine-specific family [Prevotella
          ruminicola 23]
          Length = 448

 Score = 97.1 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG+ L  ++           + +    ++  Y ANF + +I  D++ +  
Sbjct: 1  MKVVDLFCGCGGLSLGFQKA----GFNILAAFDNWDDAITVYHANFKHPVIKQDLSNVD- 55

Query: 62 QDIPDH-----DVLLAGFPCQPFSQAG 83
          Q +        D+++ G PCQ FS AG
Sbjct: 56 QTVEKVKKYKPDMIIGGPPCQDFSSAG 82


>gi|15897209|ref|NP_341814.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus P2]
 gi|284174455|ref|ZP_06388424.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus 98/2]
 gi|13813404|gb|AAK40604.1| DNA modification methylase, type II R/M system [Sulfolobus
          solfataricus P2]
 gi|261601877|gb|ACX91480.1| DNA-cytosine methyltransferase [Sulfolobus solfataricus 98/2]
          Length = 325

 Score = 97.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          ++KI DLF G GG  L  ++      +E   + +IN  + +TY  NFPNT+ I  DI +I
Sbjct: 3  LIKIIDLFSGAGGFSLGFKK----LGIEPKLAIDINHAATRTYSLNFPNTIVIEDDIREI 58

Query: 60 KTQDI-----PDHDVLLAGFPCQPFSQA 82
             +I      D DV++ G PC+ ++ A
Sbjct: 59 SGGEILKNVGNDIDVVIGGPPCEGYTAA 86


>gi|283457186|ref|YP_003361755.1| site-specific DNA methylase [Rothia mucilaginosa DY-18]
 gi|283133170|dbj|BAI63935.1| site-specific DNA methylase [Rothia mucilaginosa DY-18]
          Length = 439

 Score = 97.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 24/103 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN--------VECFFSSEINP-------YSVKTYQAN 46
           +++ +LF G+GG RL  E  +N               ++++  P       ++ + YQ  
Sbjct: 12  IRVIELFAGVGGFRLGFE-GYNANGMTLPSAGPFTTVWANQWEPPGTVGRQFAARCYQER 70

Query: 47  FPNT--LIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQ 81
           F     L   DI  +         +IPD D+L  GFPCQ +S 
Sbjct: 71  FGEEANLENRDIHAVLDDVEAGLYEIPDADLLCGGFPCQDYSV 113


>gi|167758237|ref|ZP_02430364.1| hypothetical protein CLOSCI_00575 [Clostridium scindens ATCC 35704]
 gi|167664134|gb|EDS08264.1| hypothetical protein CLOSCI_00575 [Clostridium scindens ATCC 35704]
          Length = 418

 Score = 97.1 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K+  LF GI   ++ LE+      +E + + EI+ Y++K  + N P+ +  GD+ K   
Sbjct: 21  MKVLSLFDGISCGKVALERAG--IQIEEYVAFEIDKYAIKISKKNHPDIIQRGDVTKADF 78

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            +    D+++ G PCQ FS AG
Sbjct: 79  SEFEGFDIVIGGSPCQGFSFAG 100


>gi|319779704|ref|YP_004130617.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109728|gb|ADU92474.1| DNA-cytosine methyltransferase [Taylorella equigenitalis MCE9]
          Length = 339

 Score = 96.8 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
             +DLF G+GG R+  E        +C FS E N ++ +TY  NF   L + DI  I  
Sbjct: 12 FTFSDLFAGMGGFRVAFES----LGAKCVFSCENNTFAKETYWINF-KELTYDDIYTIPM 66

Query: 62 QDIPDHDVLLAGFPCQPFSQ 81
            +PDHD++ AGFP +  S 
Sbjct: 67 DIVPDHDIMCAGFPPETISL 86


>gi|221232587|ref|YP_002511741.1| DNA modification methylase [Streptococcus pneumoniae ATCC 700669]
 gi|220675049|emb|CAR69627.1| putative DNA modification methylase [Streptococcus pneumoniae
          ATCC 700669]
          Length = 421

 Score = 96.8 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          +K+ +LF G+GG R+ LE        +  ++++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQL-FKTKWANQWEPSRKSQDAFEVYDYHFPNSKNINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   +   + D D+++ GFPCQ +S A
Sbjct: 60 ISDITDEQFSKM-DADMIVGGFPCQDYSVA 88


>gi|325270791|ref|ZP_08137382.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
 gi|324986907|gb|EGC18899.1| modification methylase Eco47II [Prevotella multiformis DSM 16608]
          Length = 437

 Score = 96.8 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L + +            +EI P + +T + N P+  ++  DI ++ 
Sbjct: 73  FTSVELFAGCGGLALGIHKA----GFRHVLLNEIEPVACRTLRRNRPDWNVLNEDIHRVD 128

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
              +    D+L  GFPCQ FS AG
Sbjct: 129 FSPLSGKVDLLTGGFPCQAFSYAG 152


>gi|325678040|ref|ZP_08157677.1| putative modification methylase BspRI [Ruminococcus albus 8]
 gi|324110257|gb|EGC04436.1| putative modification methylase BspRI [Ruminococcus albus 8]
          Length = 358

 Score = 96.8 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          + + DLFCG GG     +        +     +I   ++ TY  NFPN + I  DI+ +K
Sbjct: 1  MNVFDLFCGCGGFSKGFQSA----GFDIKLGIDIWQDAITTYNHNFPNAVTITEDISNLK 56

Query: 61 TQDI--------PDHDVLLAGFPCQPFSQAG 83
           +D+         + DV++ G PCQ FS +G
Sbjct: 57 GEDLLSRANLTADEVDVIIGGPPCQGFSLSG 87


>gi|254883949|ref|ZP_05256659.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
 gi|254836742|gb|EET17051.1| site-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
          Length = 420

 Score = 96.8 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G+   ++ L++       E +++SEI+ ++++  Q NFP+T+  GD+ ++  
Sbjct: 1  MKVLSLFDGMSCGQIALKRLGIRT--ETYYASEIDRHAIRQTQLNFPDTIQLGDVTQVDV 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +   D+L+ G PCQ FS AG
Sbjct: 59 RQLEPIDLLIGGSPCQSFSFAG 80


>gi|119489697|ref|ZP_01622456.1| putative 5-methylcytosine methyltransferase [Lyngbya sp. PCC
          8106]
 gi|119454434|gb|EAW35583.1| putative 5-methylcytosine methyltransferase [Lyngbya sp. PCC
          8106]
          Length = 384

 Score = 96.8 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 1  MLK-ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          M K   DLF G GG+   LEQ       EC    + +  S++T+QAN  +  +I GD+ +
Sbjct: 1  MAKMFIDLFSGAGGMSCGLEQA----GFECILGIDQDKASLETFQANHHHANIICGDLRE 56

Query: 59 IKTQDIPD------HDVLLAGFPCQPFSQAG 83
          I  +DI +       D++  G PCQ FS  G
Sbjct: 57 ITLEDIYEQIDNQTVDLICGGPPCQGFSTIG 87


>gi|172038386|ref|YP_001804887.1| site-specific DNA-methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699840|gb|ACB52821.1| probable site-specific DNA-methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 461

 Score = 96.8 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+ + +EQ       +   + EI+ Y  +T   N PN  + GDI      DI
Sbjct: 74  ISFFSGAMGLDIGIEQA----GFDIKLACEIDKYCRQTIALNKPNIALVGDINSCSADDI 129

Query: 65  ---------PDHDVLLAGFPCQPFSQAG 83
                     D D+++ G PCQ FS AG
Sbjct: 130 LSYAGLTRSDDIDLIVGGPPCQAFSTAG 157


>gi|4033737|gb|AAC97190.1| modification methylase M.NspI [Nostoc sp. PCC 7524]
          Length = 397

 Score = 96.8 bits (241), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLFCG GGI   L Q       +   S EI+P +  T+Q NFP+   F GDI +  
Sbjct: 60  YTFVDLFCGAGGITQGLVQA----GFQALASVEISPIASATHQRNFPHCHHFWGDIEQFY 115

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
            +        P+ ++++ G PCQ FS AG
Sbjct: 116 PKSWLQQIGYPEVNLVVGGPPCQGFSVAG 144


>gi|310657622|ref|YP_003935343.1| cytosine-specific methyltransferase [Clostridium sticklandii DSM
          519]
 gi|308824400|emb|CBH20438.1| Cytosine-specific methyltransferase [Clostridium sticklandii]
          Length = 344

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          + + DLFCG GG+    EQ             + +  +++T++ N  N   I GDI +I 
Sbjct: 1  MNLIDLFCGCGGLSYGFEQA----GFNVLLGIDNDKAALETFKLNHKNSKTICGDIREIT 56

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
            +I +       D+++ G PCQ  S +G
Sbjct: 57 FDEINNVIGNKKIDLIVGGPPCQGMSLSG 85


>gi|228969793|ref|ZP_04130554.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228789920|gb|EEM37741.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 246

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLF GIGGI L  +       +E     EI P++ K    ++P   IF DI  +  
Sbjct: 1  MKMLDLFSGIGGISLAADWA----GIETTAFCEIEPFNQKVLNKHWPKVPIFSDIRTLTK 56

Query: 62 QDIPD--HDV-----LLAGFPCQPFSQAG 83
          Q + +   DV     +  GFPCQP+S AG
Sbjct: 57 QSLEERGVDVGTISIVAGGFPCQPYSVAG 85


>gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 468

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L    LF G GG  L                 E++P   K Y+ NFPN+   G DI +I+
Sbjct: 117 LNAISLFSGCGGFSLGFSAA----GFNVRGFLELDPGLRKIYRLNFPNSFEMGGDITQIQ 172

Query: 61  TQDIP-------DHDVLLAGFPCQPFSQAG 83
              I        D DV++ G PCQ FS +G
Sbjct: 173 DAKIKNYKSLIGDIDVIIGGPPCQGFSLSG 202


>gi|116492328|ref|YP_804063.1| site-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102478|gb|ABJ67621.1| Site-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 428

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN-TLIFGD 55
          LK+ +LF G+GG R+ LE        +  +S++  P      + + Y  +FPN   I  +
Sbjct: 5  LKVLELFAGVGGFRVGLEHANASL-YKTLWSNQWEPGKKSQDAFEVYNYHFPNSENINEN 63

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I++I  +     + D+++ GFPCQ +S A
Sbjct: 64 ISEISNEKFKTMNADLIVGGFPCQDYSVA 92


>gi|126658774|ref|ZP_01729918.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
 gi|126619872|gb|EAZ90597.1| site-specific DNA-methyltransferase [Cyanothece sp. CCY0110]
          Length = 461

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+ L +EQT      +   + EI+ Y  +T   N PN  + GDI      DI
Sbjct: 74  ISFFSGAMGLDLGIEQT----GFDIKLACEIDKYCRQTITLNKPNIALVGDINSYSADDI 129

Query: 65  ---------PDHDVLLAGFPCQPFSQAG 83
                     D D+++ G PCQ FS AG
Sbjct: 130 LSYAGLTRSDDIDLIVGGPPCQAFSTAG 157


>gi|311977245|gb|ADQ20501.1| M2.BfuAI [Lysinibacillus fusiformis]
          Length = 342

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K+ DLFCG GG+ L  ++       E   + + NP   KT++ NFP    F  DI ++ 
Sbjct: 1  MKVVDLFCGAGGLHLGFQEA----GFEIKLAVDSNPIVAKTHEFNFPEIPFFSDDINQLT 56

Query: 61 TQDI------PDHDVLLAGFPCQPFSQAG 83
            ++       + DVL+ G PCQ FS  G
Sbjct: 57 GFELFNLIEGEEIDVLIGGPPCQGFSTIG 85


>gi|293365989|ref|ZP_06612691.1| modification methylase Sau3AI [Streptococcus oralis ATCC 35037]
 gi|307702387|ref|ZP_07639344.1| DNA-cytosine methyltransferase [Streptococcus oralis ATCC 35037]
 gi|291315532|gb|EFE55983.1| modification methylase Sau3AI [Streptococcus oralis ATCC 35037]
 gi|307624064|gb|EFO03044.1| DNA-cytosine methyltransferase [Streptococcus oralis ATCC 35037]
          Length = 421

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          +K+ +LF G+GG R+ LE        +  ++++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQL-FKTKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   +   + D D+++ GFPCQ +S A
Sbjct: 60 ISDITDEQFSKM-DADMIVGGFPCQDYSVA 88


>gi|332711623|ref|ZP_08431554.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332349601|gb|EGJ29210.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 427

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            ++ +LF G GG+ L  E       +      EI+   V T + N P+  +I  DIA + 
Sbjct: 81  FRVIELFAGCGGMALGFENA----GLTTKLLVEIDKDCVNTLKLNRPSWEIIPEDIANVD 136

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
             +  D  D++  G PCQ FS AG
Sbjct: 137 FTNYKDNVDIVAGGVPCQAFSYAG 160


>gi|222151724|ref|YP_002560880.1| type II modification methyltransferase [Macrococcus caseolyticus
          JCSC5402]
 gi|222120849|dbj|BAH18184.1| type II modification methyltransferase [Macrococcus caseolyticus
          JCSC5402]
          Length = 413

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ ++F G+GG R+ LE T N+   E  ++++  P     ++   Y  NF   +    D
Sbjct: 4  IKVAEMFAGVGGFRIGLENTNNNM-FEVTWANQWEPSRKVQHAFDCYSRNFKTGIHSNQD 62

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I ++   ++   + D+++ GFPCQ +S A
Sbjct: 63 ITEVPNAELAATNVDMIVGGFPCQDYSVA 91


>gi|289177801|gb|ADC85047.1| DNA-cytosine methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 513

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD- 63
              F G GG+ L  E+      +      E N     T   N P+  + GDI KI   + 
Sbjct: 137 LSFFSGAGGLDLGFERA----GISAALYCENNRECRMTLHRNRPDVALLGDITKISADEV 192

Query: 64  -----IP---DHDVLLAGFPCQPFSQAG 83
                IP   + DV+  G PCQ FS AG
Sbjct: 193 RRMARIPQGREIDVMFGGPPCQAFSTAG 220


>gi|183602700|ref|ZP_02964064.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219682526|ref|YP_002468909.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190098|ref|YP_002967492.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195504|ref|YP_002969059.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218118|gb|EDT88765.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219620176|gb|ACL28333.1| modification methylase SinI [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248490|gb|ACS45430.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250058|gb|ACS46997.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295793085|gb|ADG32620.1| site-specific DNA-methyltransferase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 453

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD- 63
              F G GG+ L  E+      +      E N     T   N P+  + GDI KI   + 
Sbjct: 77  LSFFSGAGGLDLGFERA----GISAALYCENNRECRMTLHRNRPDVALLGDITKISADEV 132

Query: 64  -----IP---DHDVLLAGFPCQPFSQAG 83
                IP   + DV+  G PCQ FS AG
Sbjct: 133 RRMARIPQGREIDVMFGGPPCQAFSTAG 160


>gi|304407248|ref|ZP_07388901.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus
          YK9]
 gi|304343689|gb|EFM09530.1| DNA-cytosine methyltransferase [Paenibacillus curdlanolyticus
          YK9]
          Length = 401

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M K+ DLF G GG+     Q       +   S EI+  +  T + N P T ++  D+ ++
Sbjct: 1  MYKVLDLFSGCGGLGEGFLQA----GFDIAASVEIDEKACATQKFNHPETQVLQADLTQL 56

Query: 60 KTQD------IPDHDVLLAGFPCQPFSQAG 83
            +D      I + D+++ G PCQ FS  G
Sbjct: 57 APRDLSLATGITNFDLIIGGPPCQGFSLIG 86


>gi|213692102|ref|YP_002322688.1| C-5 cytosine-specific DNA methylase [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|213523563|gb|ACJ52310.1| C-5 cytosine-specific DNA methylase [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|320458217|dbj|BAJ68838.1| hypothetical phage protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 880

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP--YSVKTYQANFPNTLIFGDIAKIKT 61
          I  LF G GG+ L ++       +   ++S+I P   ++++Y A+  +    GDI  I  
Sbjct: 11 IGSLFSGYGGLDLGVDMALGG-GMRVAYTSDIEPGPCAIESYHAHGDDCPNLGDITGIDF 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +PD DV++ G PCQ  S AG
Sbjct: 70 EKLPDTDVVVGGSPCQSLSLAG 91


>gi|315613695|ref|ZP_07888602.1| modification methylase Sau3AI [Streptococcus sanguinis ATCC
          49296]
 gi|315314386|gb|EFU62431.1| modification methylase Sau3AI [Streptococcus sanguinis ATCC
          49296]
          Length = 421

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          +K+ +LF G+GG R+ LE        +  ++++  P      + + Y  +FPN+      
Sbjct: 1  MKVLELFAGVGGFRIGLENADKQL-FKTKWANQWEPSRKSQDAFEVYDYHFPNSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   +   + D D+++ GFPCQ +S A
Sbjct: 60 ISDITDEQFSKM-DADMIVGGFPCQDYSVA 88


>gi|157826842|ref|YP_001495906.1| cytosine-C5 specific DNA methylase [Rickettsia bellii OSU 85-389]
 gi|157802146|gb|ABV78869.1| Cytosine-C5 specific DNA methylase [Rickettsia bellii OSU 85-389]
          Length = 374

 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 25/107 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-----------------------HRNVECFFSSEINPY 38
           +K+  LF G GG+ L  E  FN                           E  F ++I   
Sbjct: 31  IKVISLFSGCGGLDLGFEGNFNIHESCIKDDDFIKSKNGNTVILKDNPFEIVFCNDIMQE 90

Query: 39  SVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +   ++ANF N L +    I ++K   +P  D+++ GFPCQ FS AG
Sbjct: 91  AKVAWEANFSNKLEYSTKSIRELKGYLLPKADLVIGGFPCQDFSLAG 137


>gi|291525775|emb|CBK91362.1| DNA-methyltransferase (dcm) [Eubacterium rectale DSM 17629]
          Length = 510

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF GIGG  L         ++   ++SEI+P+ +      FP     GDI K+  
Sbjct: 4  LKLGSLFDGIGGFPL----AATMNDIRPVWASEIDPFPMAVTAYRFPEMKHMGDITKLHG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  DV+  G PCQ  S AG
Sbjct: 60 ANLPVVDVIAGGSPCQDLSVAG 81


>gi|330723541|gb|AEC45911.1| cytosine specific DNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 416

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
            K  DLF G GG+  DL         E   S EI P +V+TY  NF N       +   D
Sbjct: 92  YKFIDLFSGAGGLSCDLVMA----GFEPIASVEIMPDAVETYVYNFQNRKKKEELIETRD 147

Query: 56  IAKIKTQD-----IPD--HDVLLAGFPCQPFSQAG 83
           I  +K ++       D   D+++ GFPCQ FS AG
Sbjct: 148 IRDVKVKEELYNKFKDTDIDLIVGGFPCQGFSMAG 182


>gi|225862883|ref|YP_002748261.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
 gi|225787129|gb|ACO27346.1| DNA (cytosine-5-)-methyltransferase [Bacillus cereus 03BB102]
          Length = 367

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          KI DLF G+GG  L  E        E  F+ +    ++ TY  N   +  +  DIA +  
Sbjct: 5  KIMDLFSGVGGFSLGFEMA----GYETIFAIDFWKDAIATYNLNRKKDIAVHMDIANLTN 60

Query: 62 QDIP----DHDV--LLAGFPCQPFSQAG 83
          + +     +HD+  ++ G PCQ FS  G
Sbjct: 61 EHLRKLKEEHDIEGIIGGPPCQGFSTVG 88


>gi|228478395|ref|ZP_04063003.1| modification methylase HaeIII [Streptococcus salivarius SK126]
 gi|228250074|gb|EEK09344.1| modification methylase HaeIII [Streptococcus salivarius SK126]
          Length = 387

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN------VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  + N          F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPEITMIE 60

Query: 54 GDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
           DIA I    +          D+++ G PCQ FS  G
Sbjct: 61 DDIANIDESFLKSKGISPKGVDLVIGGPPCQSFSTVG 97


>gi|229133328|ref|ZP_04262157.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
 gi|228650144|gb|EEL06150.1| Modification methylase Sau3AI [Bacillus cereus BDRD-ST196]
          Length = 413

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+ + +LF G+GG R+ LE+  +    +  + ++  P      +   Y   F +  I   
Sbjct: 1  MINVIELFAGVGGFRIGLEKMNH---FQVVWGNQWEPSKKAQDAFHCYAQRFQDKGIHCN 57

Query: 54 GDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
           DIA +  ++I   D D+++ GFPCQ +S A
Sbjct: 58 QDIATVTDEEIQKIDADMIVGGFPCQDYSVA 88


>gi|19718332|ref|NP_604405.1| plasmid encoded methyltransferase Pem [Salmonella enteritidis]
 gi|19526586|gb|AAL87019.1| plasmid encoded methyltransferase Pem [Salmonella enterica subsp.
          enterica serovar Enteritidis]
          Length = 382

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          ++  ++F G GG+   LE        +     E+N ++  + + NF    +F GDI    
Sbjct: 1  MRSLEIFSGAGGLAKGLELA----GFQHVGFVELNKHACDSLRLNFDEEKVFQGDIKNYD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             I   D++  G PCQPFS  G
Sbjct: 57 LSSIDKIDIVAGGPPCQPFSLGG 79


>gi|400283|sp|P31974|MTA1_CELCE RecName: Full=Modification methylase AluI; Short=M.AluI; AltName:
          Full=Cytosine-specific methyltransferase AluI
 gi|580712|emb|CAA77866.1| Alu I DNA-(cytosine C5)-methyltransferase [Cellulosimicrobium
          cellulans]
 gi|300124216|gb|ADJ68011.1| M.AluI [Cellulosimicrobium cellulans]
          Length = 521

 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK----- 58
            DLF GIGG    L  T       C ++ EI+  +   Y+ N+ N    GDI       
Sbjct: 10 FVDLFAGIGGFHAALAAT----GGVCEYAVEIDREAAAVYERNW-NKPALGDITDDANDE 64

Query: 59 ---IKTQDIPDHDVLLAGFPCQPFSQAG 83
             ++  D P  DVL  GFPCQPFS++G
Sbjct: 65 GVTLRGYDGP-IDVLTGGFPCQPFSKSG 91


>gi|158284395|ref|XP_306830.2| Anopheles gambiae str. PEST AGAP012836-PA [Anopheles gambiae str.
          PEST]
 gi|157021124|gb|EAA45924.2| AGAP012836-PA [Anopheles gambiae str. PEST]
          Length = 238

 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKT 61
          ++ +LF GIGG+R+ LEQ       E   + ++NP + + Y+ NF   T+  G+I  +  
Sbjct: 16 RVLELFSGIGGMRMALEQAGKE--FEIVSAIDVNPIANEVYKHNFGAKTVRNGNILSLTA 73

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
          + +     D +L   PCQPF++ G
Sbjct: 74 EKVTKLKVDTILMSPPCQPFTRNG 97


>gi|75812889|ref|YP_320506.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
 gi|75705645|gb|ABA25317.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
          Length = 415

 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            LF G+GG  L  E        E   + + NP  + TYQ NFP+ T++  DI ++  Q+
Sbjct: 12 ISLFSGVGGFDLGFEAA----GFEIAIAIDNNPIVLATYQHNFPHATVLCKDIREVTAQE 67

Query: 64 IP------------DHDVLLAGFPCQPFSQAG 83
          I             +   +  G PCQ FS AG
Sbjct: 68 IRACIQAKYVDWDGEIHTVFGGPPCQGFSVAG 99


>gi|193071751|ref|ZP_03052649.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
 gi|192954951|gb|EDV85456.1| DNA-cytosine methyltransferase [Escherichia coli E110019]
          Length = 374

 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-K 60
           ++ DLFCG GG+             E   + + N  ++ TY ANF    +  +I +   
Sbjct: 9  FRVIDLFCGAGGLSYGFLHGEMSDYFESILAIDNNAAAINTYNANFGLHGVQANIEEWAS 68

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
          +  +P+ DV++ G PCQ FS 
Sbjct: 69 SNTVPEADVVIGGPPCQGFSL 89


>gi|148380278|ref|YP_001254819.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum A str.
          ATCC 3502]
 gi|148289762|emb|CAL83870.1| putative C-5 cytosine-specific DNA methylase [Clostridium
          botulinum A str. ATCC 3502]
          Length = 340

 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKI 59
          +K+  LF GIG     L     +++ E     EI+ Y+   Y    N   +L  GD++KI
Sbjct: 4  IKLLSLFSGIGAFEKALSNI--NQDHEIINYCEIDKYASYAYSVLHNANESLNLGDVSKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              + D D+L  G PCQ FS AG
Sbjct: 62 NPDTLKDFDLLTHGSPCQSFSLAG 85


>gi|70606458|ref|YP_255328.1| site-specific DNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567106|gb|AAY80035.1| site-specific DNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 319

 Score = 96.0 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+ DLF G GG  L   +       E   S +IN  + +TY  NFPNT +I  DI  I  
Sbjct: 5  KVIDLFSGAGGFSLGFNR----EPFEIKLSVDINHAAARTYSINFPNTVVIEDDIRNITG 60

Query: 62 QDIP-----DHDVLLAGFPCQPFSQA 82
          +DI      + D+++   PC+PF+ A
Sbjct: 61 RDIRYLIGGEPDIIIGSPPCEPFTGA 86


>gi|323143137|ref|ZP_08077837.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
          12066]
 gi|322417087|gb|EFY07721.1| DNA (cytosine-5-)-methyltransferase [Succinatimonas hippei YIT
          12066]
          Length = 541

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG+ L   QT      E   + E +P    TY+ N PN  + GD+      D
Sbjct: 5  VVDLFAGAGGLSLGFVQTGK---YEMKVAFERDPNMQATYRLNHPNVELQGDVCGADYAD 61

Query: 64 IPD----HDVLLAGFPCQPFSQA 82
          I       DV++ G PCQ FS A
Sbjct: 62 IQKRYGAIDVVIGGPPCQGFSNA 84


>gi|328946253|gb|EGG40397.1| modification methylase Sau96I [Streptococcus sanguinis SK1087]
          Length = 333

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ +LF G GG+ L +E+       E     E +  + +T ++N P+  +I  DI KI 
Sbjct: 1  MKVIELFAGAGGLALGIERA----GFESIGLIEFDKAASETLKSNRPDWNVIHEDIEKIS 56

Query: 61 TQDIP--------DHDVLLAGFPCQPFSQAG 83
            ++         + D+L  G PCQ FS AG
Sbjct: 57 PLNLEELFNIRKGELDLLSGGAPCQSFSYAG 87


>gi|216165|gb|AAA32601.1| methyltransferase (ttg start codon) [Bacillus phage SPbeta]
          Length = 143

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
          L++  LF GIG     L       + E    SEI+ Y++K+Y A      TL  GDI+K 
Sbjct: 4  LRVMSLFSGIGAFEAALRNIG--VDYELIGFSEIDKYAIKSYCAIHNVSETLNVGDISKA 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  +IP  D+L +GFPC  FS AG
Sbjct: 62 KKDNIPYFDLLTSGFPCPTFSVAG 85


>gi|257058000|ref|YP_003135888.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|256588166|gb|ACU99052.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 423

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + +LF G GG+ L LE       ++     EI+   V T Q N P   +I  D+ KI 
Sbjct: 73  LSVIELFAGCGGMALGLENA----GLKTELLVEIDRDCVNTLQKNRPYWPIIQEDVTKID 128

Query: 61  TQDI-PDHDVLLAGFPCQPFSQAG 83
            +      D++L GFPCQ FS AG
Sbjct: 129 FRSYQGKIDIVLGGFPCQAFSYAG 152


>gi|332652901|ref|ZP_08418646.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium
          D16]
 gi|332518047|gb|EGJ47650.1| DNA (cytosine-5-)-methyltransferase [Ruminococcaceae bacterium
          D16]
          Length = 542

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DLF G GG+ L   QT   +  +   + E +PY  +TY+ N P   + GD+     
Sbjct: 4  YTAVDLFAGAGGLSLGFMQT---QKYDIKVAFENSPYMQETYRQNHPGVEVQGDVCTADY 60

Query: 62 QDI----PDHDVLLAGFPCQPFSQA 82
          +DI       DV++ G PCQ FS A
Sbjct: 61 EDIMRRYGKIDVVIGGPPCQGFSNA 85


>gi|255073161|ref|XP_002500255.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226515517|gb|ACO61513.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 599

 Score = 95.6 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL---------- 51
              ++LF G+GG  + L            F+SE+  ++ +TY A+   +           
Sbjct: 264 FTFSELFAGVGGFGVAL----RSLGGTPVFASELCGHARRTYLAHHGGSWGDDGGTDARP 319

Query: 52  ---IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                GDI  +    +P HD+L  GFPCQ FS+ G
Sbjct: 320 PLVCCGDITDVCETSMPPHDLLTGGFPCQSFSRRG 354


>gi|319936414|ref|ZP_08010830.1| cytosine-specific methyltransferase [Coprobacillus sp. 29_1]
 gi|319808529|gb|EFW05081.1| cytosine-specific methyltransferase [Coprobacillus sp. 29_1]
          Length = 418

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 3  KITDLFCGIGGIRLDLE---------QTFNHRNVECFFSSEINP-----YSVKTYQANFP 48
           + +LF G+GG R+ L          +   +      ++++  P     ++   Y   F 
Sbjct: 4  TVVELFAGVGGFRVGLNHITGFDENGRAIENGEWNFVWANQWEPSTKVQHAFDCYCKRFG 63

Query: 49 NTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          N      DI+ +   DIP+H +L+ GFPCQ +S A
Sbjct: 64 NENHSNVDISLVNKSDIPNHTLLVGGFPCQDYSVA 98


>gi|205374924|ref|ZP_03227716.1| DNA-cytosine methyltransferase [Bacillus coahuilensis m4-4]
          Length = 323

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-K 60
          +++ DLF G GG+ L  +        E   + E    ++  Y+ NF + +   D++ +  
Sbjct: 1  MRVIDLFSGCGGMSLGFQNA----GFEIVSAFENWDEAIDIYRKNFQHPICKYDLSDVKD 56

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
            D      D+++ G PCQ +S AG
Sbjct: 57 YNDFSKLNPDIIIGGPPCQDYSSAG 81


>gi|322372404|ref|ZP_08046940.1| modification methylase DdeI [Streptococcus sp. C150]
 gi|321277446|gb|EFX54515.1| modification methylase DdeI [Streptococcus sp. C150]
          Length = 387

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN------VECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  + N          F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVIDLFSGAGGLTFGFQNTIKNNNFVFRNDFNIRFANEFNRDAAEAFRLNYPKITMIE 60

Query: 54 GDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
           DIA I    +          D+++ G PCQ FS  G
Sbjct: 61 DDIANIDESFLKSKGISSKGVDLVIGGPPCQSFSTVG 97


>gi|317132209|ref|YP_004091523.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470188|gb|ADU26792.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 438

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAKI 59
             DLFCG GG+ + LEQ           + + +  +V TY+ N P     ++I  DI +I
Sbjct: 62  FIDLFCGAGGLSVGLEQ----EGFRPVAAVDKDQSAVLTYRFNRPWLTDGSIIHEDIREI 117

Query: 60  KTQDI-PDHDVLLAGFPCQPFSQ 81
             QDI P   V++ G PCQ FS 
Sbjct: 118 VNQDIFPHVPVVVGGPPCQGFSV 140


>gi|21241348|ref|NP_640930.1| cytosine methyltransferase [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21106676|gb|AAM35466.1| cytosine methyltransferase [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 106

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          +  LF G GG+   ++           FS++I   + KT +  FP+ T+  GDIA +   
Sbjct: 17 VISLFSGCGGMDFGIKAA----GGRIVFSNDILADACKTLEKYFPDSTVSCGDIAAL--H 70

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          + P+ DV++ G+PCQ FS AG
Sbjct: 71 EFPEADVVVGGYPCQSFSMAG 91


>gi|302387870|ref|YP_003823692.1| DNA-cytosine methyltransferase [Clostridium saccharolyticum WM1]
 gi|302198498|gb|ADL06069.1| DNA-cytosine methyltransferase [Clostridium saccharolyticum WM1]
          Length = 569

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 36/114 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------------- 48
           +   DLF GIGG R  LE++ +     C    EI+ Y+ K+Y A +              
Sbjct: 1   MTFLDLFAGIGGFRRGLERSGH----TCVGHVEIDKYANKSYMAMYELAPCPYREDAGSN 56

Query: 49  -------------------NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                                    DI +I+  +IP  ++   GFPC   S AG
Sbjct: 57  FSMMCKPEVRKNCDGKNCTGEWYAKDIKQIRAGEIPKAEIWTFGFPCTDISIAG 110


>gi|291543312|emb|CBL16421.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 668

 Score = 95.2 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L       +  ++  + SEI PY+V       P+   +GD++K+  
Sbjct: 6  LTLGSLFSGSGGFEL----AGIYAGIKPVWLSEIEPYAVLVTHNRLPDVKHYGDVSKLSG 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+P  D++  G PCQ  S AG
Sbjct: 62 ADLPPVDIITFGSPCQDMSIAG 83


>gi|331027909|ref|YP_004421459.1| DNA methylase [Synechococcus phage S-CBS2]
 gi|294805522|gb|ADF42361.1| DNA methylase [Synechococcus phage S-CBS2]
          Length = 286

 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G+   ++ L +       + +F+SEI+ Y+++  Q N+PNT   G I  +K 
Sbjct: 1  MNVLSLFDGMSCGQIALNKLGIK--YDNYFASEIDKYAIQVTQKNYPNTKQIGSITDVKG 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +P  D+L  G PCQ FS AG
Sbjct: 59 EYLPKIDLLFGGSPCQSFSNAG 80


>gi|158291464|ref|XP_312975.4| AGAP004101-PA [Anopheles gambiae str. PEST]
 gi|157017559|gb|EAA08679.4| AGAP004101-PA [Anopheles gambiae str. PEST]
          Length = 345

 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKT 61
          ++ +LF GIGG+R+ LE+       E   + ++NP + + Y+ NF   T+  G+I  +  
Sbjct: 16 RVLELFSGIGGMRMALEEAGKE--FEIVSAIDVNPIANEVYKHNFGAETVRNGNILSLTA 73

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
          + +     D +L   PCQPF++ G
Sbjct: 74 EKVTKLKVDTILMSPPCQPFTRNG 97


>gi|161528981|ref|YP_001582807.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
 gi|160340282|gb|ABX13369.1| DNA-cytosine methyltransferase [Nitrosopumilus maritimus SCM1]
          Length = 360

 Score = 95.2 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG+ L  +        +   + E +  + +TY  NF  T LI  DI  IK+ 
Sbjct: 8  VIDLFAGSGGLSLGFKNA----GFKVIAAVEFDKSAAETYSKNFKETKLIVDDIKNIKSN 63

Query: 63 DIPDHD-----VLLAGFPCQPFSQA 82
          ++          ++ G PCQP+S A
Sbjct: 64 ELKKITSKERFCVIGGPPCQPYSNA 88


>gi|294155572|ref|YP_003559956.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
 gi|291599876|gb|ADE19372.1| cytosine-specific DNA modification methyltransferase [Mycoplasma
          crocodyli MP145]
          Length = 415

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 15/96 (15%)

Query: 2  LKITDLFCGIGGIRLDLE---------QTFNHRNVECFFSSEINP-----YSVKTYQANF 47
          L + +LF G+GG R+ L          +   + N    ++++  P     ++ + Y   F
Sbjct: 3  LSVVELFAGVGGFRVGLNHINSFDENGRAIENNNWNFVWANQYEPSSNKQHAFECYITRF 62

Query: 48 PNTLI-FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           +      DI+K+  + IPDH++L+ GFPCQ +S A
Sbjct: 63 GDKNHSNDDISKVDKKVIPDHNLLVGGFPCQDYSVA 98


>gi|323514189|gb|ADX89637.1| putative DNA-methyltransferase, type II restriction-modification
          system (Enterobacteria phage RB16) [Vibrio phage
          ICP1_2004_A]
          Length = 332

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G+   R+ LE+         +++SEI+  ++K  QAN+P+ +  GD+ K + 
Sbjct: 1  MNVLSLFDGMACCRIALERAGIQVG--NYYASEIDKNAIKVAQANWPDNIQLGDVTKWQE 58

Query: 62 Q--DIPDHDVLLAGFPCQPFSQAG 83
             D     ++  GFPCQ +S AG
Sbjct: 59 WGIDWASIGLVTGGFPCQAWSIAG 82


>gi|10955252|ref|NP_052188.1| DNA-methyltransferase [Escherichia coli]
 gi|1237268|gb|AAC37145.1| eco29kIM [Escherichia coli]
 gi|2660513|emb|CAA04944.1| DNA-methyltransferase [Escherichia coli]
          Length = 382

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          ++  ++F G GG+   LE        +     E+N ++  + + NF    +F GDI    
Sbjct: 1  MRSLEIFSGAGGLAKGLELA----GFQHVGFVELNKHACDSLRLNFDEEKVFQGDIKNYD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +   D++  G PCQPFS  G
Sbjct: 57 LSSLDKIDIVAGGPPCQPFSLGG 79


>gi|12583593|emb|CAC27339.1| Sth368IM methyltranferase [Streptococcus thermophilus]
 gi|15485439|emb|CAC67533.1| M.Sth368I methyltransferase [Streptococcus thermophilus]
          Length = 421

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          + + +LF G+GG R+ LE +  +   +  +S++  P      + + Y  +FP++   G  
Sbjct: 1  MNVLELFAGVGGFRIGLENSDKNF-FKTRWSNQWEPSRKSQDAFEVYNYHFPDSENIGYS 59

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I+ I  +     D D+++ GFPCQ +S A
Sbjct: 60 ISDISDEKFASMDADMIVGGFPCQDYSVA 88


>gi|167046802|ref|YP_001661472.1| DNA methyltransferase [Acinetobacter venetianus]
 gi|83833711|gb|ABC47668.1| DNA methyltransferase [Acinetobacter venetianus]
          Length = 737

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L    LF G GG+ +  ++  ++    C  +S+I   +  TY  N+P+   F  DI +I 
Sbjct: 8  LNFISLFTGAGGLDIGFKEAGHN----CLLASDIMKEAELTYSYNYPSVPFFREDIRQIP 63

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
                     + DV++ G PCQ FS  G
Sbjct: 64 LDKFKKVIGDKEVDVIIGGPPCQGFSNMG 92



 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+  DLF G+GG    L+       ++C   ++ + Y+V+ Y+ N  +       A +  
Sbjct: 371 LRFADLFSGVGGFTEGLKSA----GLDCILGADFDRYAVEAYRKNHTDHECLE--ADLSD 424

Query: 62  QDIP----------DHDVLLAGFPCQPFSQAG 83
           ++I             D+++ G PCQ FS  G
Sbjct: 425 EEIQHNIAMRLKEQKVDLVVGGPPCQGFSIFG 456


>gi|10954474|ref|NP_039765.1| DNA cytosine-5 methylase subunit A [Methanothermobacter
          thermautotrophicus]
 gi|266583|sp|P29567|MTHT_METTF RecName: Full=Modification methylase MthTI; Short=M.MthTI;
          AltName: Full=Cytosine-specific methyltransferase MthTI
 gi|44641|emb|CAA48436.1| TIM [Methanothermobacter thermautotrophicus]
 gi|149743|gb|AAA73370.1| TIM [Methanothermobacter thermautotrophicus]
          Length = 330

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + I   F G GG+ L   +          F+++      KT++ N    +    I  +K 
Sbjct: 3  MDIASFFSGAGGLDLGFTKA----GFNIVFANDNWKGCWKTFEKNHGIKINKKPIEWLKP 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +IPD    + G PCQ +S AG
Sbjct: 59 SEIPDVVGFIGGPPCQSWSLAG 80


>gi|119493084|ref|ZP_01624009.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
 gi|119452829|gb|EAW34004.1| C-5 cytosine-specific DNA methylase [Lyngbya sp. PCC 8106]
          Length = 441

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            DLF G GG+ L  EQ       +   + EI+P     +Q NFP  ++   DI+K+ +  
Sbjct: 17  VDLFAGSGGMTLGFEQA----GFDVLAAVEIDPIHCAVHQYNFPLWSVFCEDISKLSSDK 72

Query: 64  IP--------DHDVLLAGFPCQPFSQAG 83
           I         D DV+  G PCQ FS  G
Sbjct: 73  IRIYSSIKNQDIDVVFGGPPCQGFSLMG 100


>gi|312133558|ref|YP_004000897.1| dcm2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772809|gb|ADQ02297.1| Dcm2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 429

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 23/104 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN---------VECFFSSEINP-------YSVKTYQA 45
           ++I +LF G+GG RL L+      +             ++++  P       ++ + Y+ 
Sbjct: 5   IRIAELFAGVGGFRLGLDGYGKKGDAFYMEPAGPFHTVWANQWEPTGQESKQFAWRCYEK 64

Query: 46  NFPN-TLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
            F   + +  DIAK+  +       IP+ D+L+ GFPCQ +S A
Sbjct: 65  RFGEGSCVNEDIAKVLDEVDAGTRTIPEFDMLVGGFPCQDYSVA 108


>gi|218245850|ref|YP_002371221.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058898|ref|YP_003136786.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
 gi|218166328|gb|ACK65065.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|256589064|gb|ACU99950.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8802]
          Length = 418

 Score = 94.8 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   S EI+P     +  NFP  ++I  DI  I  Q+
Sbjct: 9  VDLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCLVHHYNFPFWSIICRDIQTITGQE 64

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          I           DV+  G PCQ FS  G
Sbjct: 65 IRQLSKVGNHPIDVVFGGPPCQGFSLMG 92


>gi|308389149|gb|ADO31469.1| Cytosine-specific methyltransferase NlaX [Neisseria meningitidis
          alpha710]
          Length = 275

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF GIGG  L  EQ       +  +  EI+  +       FP+   F D+      
Sbjct: 5  TVGSLFAGIGGFDLGFEQA----GFQTAWQVEIDEVNRAVLADRFPHARQFADVRTALP- 59

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D+   DV++ GFPCQ  S AG
Sbjct: 60 DLWSVDVIVGGFPCQDVSTAG 80


>gi|146305026|ref|YP_001192342.1| DNA-cytosine methyltransferase [Metallosphaera sedula DSM 5348]
 gi|145703276|gb|ABP96418.1| DNA-cytosine methyltransferase [Metallosphaera sedula DSM 5348]
          Length = 313

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K+ DLF G GG              +   + EIN  + +TY ANFP T++   DI +I  
Sbjct: 5  KVVDLFSGAGGFGRGF----KEVGFQIGVAVEINHAAARTYSANFPTTIVLEEDIREITG 60

Query: 62 QDI-----PDHDVLLAGFPCQPFSQA 82
          ++I      + DV++   PC+PF+ A
Sbjct: 61 REIVREIGKEPDVVIGSPPCEPFTAA 86


>gi|288559285|ref|YP_003422771.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium
          M1]
 gi|288541995|gb|ADC45879.1| DNA-cytosine methyltransferase [Methanobrevibacter ruminantium
          M1]
          Length = 342

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           + DLFCGIGG     E        +  F  +I   +++T+Q N  NT  I  D+ ++  
Sbjct: 5  TVIDLFCGIGGFSKGFEMA----GFDVLFGIDIWDIAIETFQHNHKNTEGILADLTELDD 60

Query: 62 QDIP----DHDVLLAGFPCQPFSQAG 83
                    DV++AG PCQ FS  G
Sbjct: 61 DFFKQYTNKVDVIIAGPPCQGFSMCG 86


>gi|194337838|ref|YP_002019632.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194310315|gb|ACF45015.1| DNA-cytosine methyltransferase [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 409

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
          +K  ++F G GG+   LE +      E     E N ++ ++   NF P  + FGDI    
Sbjct: 1  MKTLEIFSGAGGLAKGLELS----GFEHTAFVEFNKHACESLSENFDPARVFFGDIKDFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             + D D++  G PCQPFS  G
Sbjct: 57 LDSLEDIDIVAGGPPCQPFSLGG 79


>gi|171779450|ref|ZP_02920414.1| hypothetical protein STRINF_01295 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282067|gb|EDT47498.1| hypothetical protein STRINF_01295 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 133

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L +    +  EC    EI+ ++ K+Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLTR----QGHECIGFCEIDKFARKSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAG 73
            QD        D++  G
Sbjct: 60 TDQDFRQLRGQVDIICGG 77


>gi|237711274|ref|ZP_04541755.1| site-specific DNA-methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455118|gb|EEO60839.1| site-specific DNA-methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 296

 Score = 94.8 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + +LF GIGG  + L+      + E  F SEI  +++  ++ NFP     G +  I  
Sbjct: 1  MVLLELFSGIGGFSMGLQAAG--YSFEKVFFSEIEKHAIANFKYNFPYAEHIGSVTDIAK 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ FS  G
Sbjct: 59 VGIARPDIITFGSPCQNFSAVG 80


>gi|304390603|ref|ZP_07372556.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326359|gb|EFL93604.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 309

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          L+  DLF G GG+ L  E        +   + E    +++ Y+ANF +  +  D++ +  
Sbjct: 7  LRCVDLFSGCGGMSLGFEMA----GFDVVAAYENWAPALRVYRANFDHPAVEQDLSNVAE 62

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
            + I     D+++ G PCQ FS AG
Sbjct: 63 SVESITQFEPDLVIGGPPCQDFSTAG 88


>gi|194098099|ref|YP_002001147.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae NCCP11945]
 gi|239998556|ref|ZP_04718480.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae 35/02]
 gi|240013681|ref|ZP_04720594.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae DGI18]
 gi|240016120|ref|ZP_04722660.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA6140]
 gi|240080261|ref|ZP_04724804.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae FA19]
 gi|240112474|ref|ZP_04726964.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae MS11]
 gi|240115214|ref|ZP_04729276.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID18]
 gi|240120750|ref|ZP_04733712.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID24-1]
 gi|240123054|ref|ZP_04736010.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae PID332]
 gi|240125307|ref|ZP_04738193.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae SK-92-679]
 gi|193933389|gb|ACF29213.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae NCCP11945]
 gi|317163831|gb|ADV07372.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae TCDC-NG08107]
          Length = 347

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--IPDHDVLL 71
          + L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   D  IPD D++L
Sbjct: 1  MDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPNDPTIPDCDIIL 56

Query: 72 AGFPCQPFSQ 81
           GFPCQ FS 
Sbjct: 57 GGFPCQDFSM 66


>gi|127439|sp|P05302|MTD1_DESNO RecName: Full=Modification methylase DdeI; Short=M.DdeI; AltName:
          Full=Cytosine-specific methyltransferase DdeI
 gi|79418|pir||S00543 site-specific DNA-methyltransferase (cytosine-specific) (EC
          2.1.1.73) DdeI - Desulfovibrio desulfuricans
 gi|40795|emb|CAA68505.1| DdeI methylase [Desulfovibrio vulgaris]
          Length = 415

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + I DLF G GG     +            + E + ++ +TY  N PN  +I  DI  + 
Sbjct: 1  MNIIDLFAGCGGFSHGFKMA----GYNSILAIEKDLWASQTYSFNNPNVSVITEDITTLD 56

Query: 61 TQDIP----DHDVLLAGFPCQPFSQAG 83
            D+     D D ++ G PCQ FS +G
Sbjct: 57 PGDLKISVSDVDGIIGGPPCQGFSLSG 83


>gi|60202518|gb|AAX14650.1| BbvCI methyltransferase 1 [Brevibacillus brevis]
          Length = 429

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L   DLF G GG  L               + E++ ++ +T++ NFP   ++  DI +I 
Sbjct: 19 LTAIDLFAGAGGFSLGFSMA----GFRVTHAIEVDKWAAETFEVNFPRTKVVTRDIQQIS 74

Query: 61 TQDIPD-HD----VLLAGFPCQPFS 80
           ++I D  D    V++ G PCQ FS
Sbjct: 75 DEEIKDIIDERPLVVIGGPPCQGFS 99


>gi|288926887|ref|ZP_06420787.1| modification methylase HindV (Cytosine-specific methyltransferase
          HindV) [Prevotella buccae D17]
 gi|288336326|gb|EFC74707.1| modification methylase HindV (Cytosine-specific methyltransferase
          HindV) [Prevotella buccae D17]
          Length = 313

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG GG+ L  E+      +E   + +    ++  Y+ NF +  I  D+  +K 
Sbjct: 1  MKVVDLFCGCGGLSLGFEKA----GMEIVAAFDNWVDALYVYRNNFSHPAIRADLMNVKA 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
            + I     D+++ G PCQ FS AG
Sbjct: 57 SIEAIRPFKPDMIIGGPPCQDFSSAG 82


>gi|312278085|gb|ADQ62742.1| Cytosine-specific methyltransferase [Streptococcus thermophilus
          ND03]
          Length = 424

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          + + +LF G+GG R+ LE           +S++  P      + + Y  +FP++      
Sbjct: 1  MNVLELFAGVGGFRIGLENANPDY-FRTLWSNQWEPSRKSQDAFEVYNYHFPDSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   +  ++ + D+++ GFPCQ +S A
Sbjct: 60 IADITDEQFAEM-NADMIVGGFPCQDYSVA 88


>gi|307277185|ref|ZP_07558289.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX2134]
 gi|306506115|gb|EFM75281.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX2134]
          Length = 429

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN-TLIFGD 55
          L + +LF G+GG R+ LE +      +  ++++  P      + + Y   FPN   I  +
Sbjct: 9  LNVLELFAGVGGFRVGLEHSNADL-FKTKWANQWEPSRKSQDAFEVYDYRFPNSENINRN 67

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I +I  ++    D D+++ GFPCQ +S A
Sbjct: 68 IEEISNEEFEQMDADIIVGGFPCQDYSVA 96


>gi|240127759|ref|ZP_04740420.1| site-specific DNA-methyltransferase M.NgoVII [Neisseria
          gonorrhoeae SK-93-1035]
          Length = 347

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--IPDHDVLL 71
          + L   Q       E  ++++ + ++ ++++ N  + ++ GDI +I   D  IPD D++L
Sbjct: 1  MDLGFHQA----GCETVWANDFSHWACESFRKNIGDVIVEGDIEQINPNDPTIPDCDIIL 56

Query: 72 AGFPCQPFSQ 81
           GFPCQ FS 
Sbjct: 57 GGFPCQDFSM 66


>gi|261368869|ref|ZP_05981752.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile
          DSM 15176]
 gi|282568964|gb|EFB74499.1| DNA (cytosine-5-)-methyltransferase [Subdoligranulum variabile
          DSM 15176]
          Length = 565

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K+ DLF G GG+ L   QT   +  +   + E +PY  +TY+ N     + GD+     
Sbjct: 5  YKVVDLFSGAGGLSLGFLQT---KKYDIKVAFENSPYMQETYKKNHTGVEVQGDVCAADY 61

Query: 62 QDI----PDHDVLLAGFPCQPFSQA 82
           DI       DV++ G PCQ FS A
Sbjct: 62 ADIVRRYGKIDVVIGGPPCQGFSNA 86


>gi|329769196|ref|ZP_08260616.1| hypothetical protein HMPREF0433_00380 [Gemella sanguinis M325]
 gi|328839415|gb|EGF88993.1| hypothetical protein HMPREF0433_00380 [Gemella sanguinis M325]
          Length = 415

 Score = 94.4 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 4  ITDLFCGIGGIRLDLE----------QTFNHRNVECFFSSEINP-----YSVKTYQANFP 48
          + +LF G+GG R+ L           +          ++++  P     ++ + Y   F 
Sbjct: 5  VVELFAGVGGFRVGLNNITEFNKKTGKALEKNGWNFVWANQYEPSTKAQHAFECYSERFQ 64

Query: 49 N-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +      DI K+  + IPDH +L+ GFPCQ +S A
Sbjct: 65 DGECSNEDINKVDKKSIPDHSLLVGGFPCQDYSVA 99


>gi|226223282|ref|YP_002757389.1| type II DNA modification enzyme (methyltransferase) [Listeria
          monocytogenes Clip81459]
 gi|225875744|emb|CAS04447.1| Putative type II DNA modification enzyme (methyltransferase)
          [Listeria monocytogenes serotype 4b str. CLIP 80459]
          Length = 389

 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV------ECFFSSEINPYSVKTYQANFPNTLIFG 54
          M+++ DLF G GG+ L  +    +            F++E++ ++ + +  NFP   +  
Sbjct: 1  MIRVVDLFSGAGGLTLGFQNRIINNTFLPMSDYNILFANEVDKHASEAFSLNFPQIPMLN 60

Query: 55 -DIAKIKTQDIPDH-------DVLLAGFPCQPFSQAG 83
            I ++    + +H       D+++ G PCQ FS  G
Sbjct: 61 CSITELTEDYLDNHEIEYSNIDLVIGGPPCQSFSTVG 97


>gi|127485|sp|P16668|MTS3_STAAU RecName: Full=Modification methylase Sau3AI; Short=M.Sau3AI;
          AltName: Full=Cytosine-specific methyltransferase
          Sau3AI
 gi|153100|gb|AAA26673.1| Sau3AIM protein [Staphylococcus aureus]
          Length = 412

 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-D 55
          +K+ +LF G+GG RL LE T N    +  ++++  P     ++   Y   F N +    D
Sbjct: 4  IKVVELFAGVGGFRLGLENTKNGI-FDITWANQWEPSRKIQHAFDCYSKRFKNGIHSNKD 62

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          IA++  +++   + D+++ GFPCQ +S A
Sbjct: 63 IAQVSDEEMANTEADMIVGGFPCQDYSVA 91


>gi|78000013|ref|YP_358798.1| putative methylase [Lactobacillus phage Lc-Nu]
 gi|37826042|gb|AAR04663.1| putative methylase [Lactobacillus phage Lc-Nu]
          Length = 261

 Score = 94.4 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  +LF GIGGI L  +       +E     E   Y     Q ++P+  +F D+ K+  
Sbjct: 1  MRSLELFAGIGGIALAEQMA----GIEVAGLCEYADYPRAILQKHWPDVPLFKDVTKLDR 56

Query: 62 QDI------PD-HDVLLAGFPCQPFSQAG 83
          +++      PD  D++  GFPCQPFS AG
Sbjct: 57 EELTNAGISPDSIDIVSGGFPCQPFSIAG 85


>gi|228478248|ref|ZP_04062856.1| modification methylase Sau3AI [Streptococcus salivarius SK126]
 gi|228249927|gb|EEK09197.1| modification methylase Sau3AI [Streptococcus salivarius SK126]
          Length = 424

 Score = 94.1 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG-- 54
          + + +LF G+GG R+ LE           +S++  P      + + Y  +FP++      
Sbjct: 1  MNVLELFAGVGGFRIGLENANPDY-FRTLWSNQWEPSRKSQDAFEVYNYHFPDSENINIS 59

Query: 55 --DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI   +  ++ + D+++ GFPCQ +S A
Sbjct: 60 IADITDEQFAEM-NADMIVGGFPCQDYSVA 88


>gi|229551649|ref|ZP_04440374.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus rhamnosus
          LMS2-1]
 gi|229314967|gb|EEN80940.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus rhamnosus
          LMS2-1]
          Length = 283

 Score = 94.1 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  +LF GIGGI L  +       +E     E   Y     Q ++P+  +F D+ K+  
Sbjct: 1  MRSLELFAGIGGIALAEQMA----GIEVAGLCEYADYPRTILQKHWPDVPLFKDVTKLDR 56

Query: 62 QDI------PD-HDVLLAGFPCQPFSQAG 83
          +++      PD  D++  GFPCQPFS AG
Sbjct: 57 EELTNAGISPDSIDIVSGGFPCQPFSIAG 85


>gi|255692343|ref|ZP_05416018.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
          17565]
 gi|260621969|gb|EEX44840.1| DNA (cytosine-5-)-methyltransferase [Bacteroides finegoldii DSM
          17565]
          Length = 297

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + +LF GIGG    L+      + E  + SEI   ++  ++ NFP     G + +I T
Sbjct: 1  MVLLELFSGIGGFSKGLQAAG--YSFEKVYFSEIEKNAIANFKYNFPYAEHIGSVTEIGT 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++  G PCQ FS  G
Sbjct: 59 AEIGHPDIITFGSPCQNFSSVG 80


>gi|157164649|ref|YP_001466261.1| putative two-component sensor [Campylobacter concisus 13826]
 gi|112801493|gb|EAT98837.1| modification methylase HphIA (Cytosine-specificmethyltransferase
           HphIA) (M.HphIA) (M.Hphi(C)) [Campylobacter concisus
           13826]
          Length = 489

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKI 59
            I DLFCG GG      +           +++I+  +++TY  N P    + I  D  K+
Sbjct: 117 TIIDLFCGAGGFSYGFSK----MGYNILLANDIDKDALRTYSFNHPEINSSRIINDDVKL 172

Query: 60  KTQDI-----PDHDVLLAGFPCQPFSQA 82
            +Q+I        D+++ G PCQ FS A
Sbjct: 173 ISQNIHKYVNLQVDMIIGGPPCQSFSSA 200


>gi|284928852|ref|YP_003421374.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
 gi|284809311|gb|ADB95016.1| DNA-methyltransferase Dcm [cyanobacterium UCYN-A]
          Length = 422

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G+GG+ L  EQ       +   S EI+P     +  NFP  T I  DI+ I  + 
Sbjct: 9  IDLFAGVGGMTLGFEQA----GFDVLGSVEIDPIHCAAHHYNFPFWTTICSDISIINAKT 64

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I         + DV+  G PCQ FS  G
Sbjct: 65 IRNLSCIGNREIDVVFGGPPCQGFSLIG 92


>gi|288927044|ref|ZP_06420936.1| site-specific DNA-methyltransferase [Prevotella buccae D17]
 gi|288336182|gb|EFC74571.1| site-specific DNA-methyltransferase [Prevotella buccae D17]
          Length = 385

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF GIG      E   +    +  F  EI  +  K  +  FPN++ + DI K   
Sbjct: 5  ITHASLFSGIG----APELAAHWMGWKNLFHCEIQEFQRKVLEYWFPNSVSYEDITKTDF 60

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           +     D+L  GFPCQPFS AG
Sbjct: 61 TEWRGKVDILTGGFPCQPFSVAG 83


>gi|325845888|ref|ZP_08169086.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481794|gb|EGC84826.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 434

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQ----------TFNHRNVECFFSSEINPY-----SVKTYQAN 46
          L + +LF G+GG R+ L +             + + +  ++++  P      + + Y   
Sbjct: 3  LTVVELFAGVGGFRVGLNKVTNFDEKSGKAIENGDWKFLWANQWEPSTKSQPAFECYSKR 62

Query: 47 FPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          F  ++    DI K+  + IP+H++L+ GFPCQ +S A
Sbjct: 63 FNESMNSNIDINKVNKESIPNHNLLVGGFPCQDYSVA 99


>gi|1781029|emb|CAA67412.1| orf1 [Methanopyrus kandleri]
          Length = 146

 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+ DLFCG GG     ++       +     E NP    TY+ NFP   +I  DI ++ +
Sbjct: 4  KVVDLFCGAGGFSRGFKEA----GFKILGGVENNPAPAATYRENFPEAEVIERDIQRVDS 59

Query: 62 QDIPDH----DVLLAGFPCQPFSQA 82
          ++I D     DV++ G PC+PF+ A
Sbjct: 60 EEIVDELGEPDVIIGGPPCEPFTAA 84


>gi|291519163|emb|CBK74384.1| DNA-methyltransferase (dcm) [Butyrivibrio fibrisolvens 16/4]
          Length = 406

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 1  MLKIT-DLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFG 54
          M K   +LF G+GG RL  E+   +      + S+  P     ++   Y  +F +     
Sbjct: 1  MQKTICELFAGVGGFRLGFERL--NTGWNTTWFSQWEPEKKNQWAHDCYVEHFGDLPDLQ 58

Query: 55 -------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                 DI+ I   +IPDH++L+ GFPCQ +S A
Sbjct: 59 GEFHTGEDISIINKDNIPDHNLLVGGFPCQDYSVA 93


>gi|325564165|gb|ADZ31422.1| M.PsuNI [Pseudomonas stutzeri]
          Length = 422

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
                LF G GG    +E    +  V+   + E++ ++ +TY+ NFP+T +F GD+    
Sbjct: 18  YTAVSLFSGCGGFCEGIE----NSGVKVKVAVELDKFACQTYRHNFPSTPLFEGDVHNFL 73

Query: 60  -------KTQDIPDHDVLLAGFPCQPFSQAG 83
                      + D D++  G PCQ +SQ G
Sbjct: 74  ADGSGHEDEYRLQDVDLVFGGPPCQGYSQIG 104


>gi|310830456|ref|YP_003965557.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
 gi|309249923|gb|ADO59489.1| Cytosine-specific methyltransferase [Paenibacillus polymyxa SC2]
          Length = 156

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L + DLFCG G   +     F     +   + +   Y+V TY  N  N  I  +I  + +
Sbjct: 36  LTMIDLFCGAG---IGA-SGFLLAGYKIISAVDNQKYAVDTYNRNIENHAICANIRFLNS 91

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
            ++PD DV+  GFPCQPFS +G
Sbjct: 92  NELPDADVISGGFPCQPFSFSG 113


>gi|223937258|ref|ZP_03629164.1| DNA-cytosine methyltransferase [bacterium Ellin514]
 gi|223894043|gb|EEF60498.1| DNA-cytosine methyltransferase [bacterium Ellin514]
          Length = 408

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLI 52
          +L+  +LF G GG+ + L    +H   +     E N ++ +T + N  N         L 
Sbjct: 7  ILRSLELFAGAGGLAIGL----HHAGFKPRALVEFNRHACETLRFNADNGFETLNGAKLF 62

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GD+ ++   +I   DV+  G PCQPFS  G
Sbjct: 63 AGDVREVDFAEIDAVDVVTGGPPCQPFSIGG 93


>gi|86750436|ref|YP_486932.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86573464|gb|ABD08021.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 438

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
            + DLFCG GG+                  S+ +P ++ TY+ANFP    I GDI    
Sbjct: 6  FSVVDLFCGAGGLSQGFRDA----GFRVVAGSDNDPDAMATYRANFPEAAGITGDIRSAP 61

Query: 61 TQD-----IPDHDVLLAGFPCQPFSQ 81
           ++          VL+ G PCQ FSQ
Sbjct: 62 IKEQLLEAARRATVLIGGPPCQAFSQ 87


>gi|302348094|ref|YP_003815732.1| Cytosine-specific DNA methylase [Acidilobus saccharovorans
          345-15]
 gi|302328506|gb|ADL18701.1| Cytosine-specific DNA methylase [Acidilobus saccharovorans
          345-15]
          Length = 327

 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 38/85 (44%), Gaps = 13/85 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG     E            + E +P   KTY+ANFP T LI  DI  +    
Sbjct: 3  IDLFSGAGGFSRGFELA----GFNVVAAVENDPPVAKTYKANFPETYLIADDIKDVSEPT 58

Query: 64 IP--------DHDVLLAGFPCQPFS 80
          I         D DV++A  PC+PF+
Sbjct: 59 IKDVSGYGRGDVDVVIASPPCEPFT 83


>gi|251781727|ref|YP_002996029.1| 5-methylcytosine methyltransferase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
 gi|242390356|dbj|BAH80815.1| 5-methylcytosine methyltransferase [Streptococcus dysgalactiae
          subsp. equisimilis GGS_124]
          Length = 422

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN----TLI 52
          +KI +LF G+GG R+ LE        +  ++++  P      + + Y  +F +     + 
Sbjct: 1  MKILELFAGVGGFRVGLENADKDL-FQTKWANQWEPSRKSQDAFEVYDYHFSDSQNINIS 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            DI     + + D D+++ GFPCQ +S A
Sbjct: 60 ISDITDEDFEKM-DADMIVGGFPCQDYSVA 88


>gi|237739124|ref|ZP_04569605.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
 gi|229423724|gb|EEO38771.1| C-5 cytosine-specific DNA methylase [Fusobacterium sp. 2_1_31]
          Length = 361

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           LK  +LF G GG+ L +E+             EI+  +  T + N PN  +I  +IA I 
Sbjct: 29  LKAIELFAGAGGLALGVEKA----GFNTIGLIEIDKNACNTLKLNRPNWNVINENIANIS 84

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
            +++ D         D+L  G PCQ FS AG
Sbjct: 85  LKNLEDFFSIKKGELDLLSGGAPCQAFSYAG 115


>gi|282901524|ref|ZP_06309446.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
 gi|281193567|gb|EFA68542.1| C-5 cytosine-specific DNA methylase [Cylindrospermopsis
          raciborskii CS-505]
          Length = 436

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ- 62
           DLF G GG+ L +E        E   S EI+P     +  NFPN   I  DI+ + ++ 
Sbjct: 15 IDLFSGAGGLSLGIESA----GFEVVISIEIDPVHSAIHNYNFPNCANICRDISNVSSEE 70

Query: 63 --------DIPDHDVLLAGFPCQPFSQAG 83
                  DI + D+L  G PCQ FSQ G
Sbjct: 71 LWNILNDKDINEVDLLAGGPPCQGFSQMG 99


>gi|317489194|ref|ZP_07947712.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325832321|ref|ZP_08165320.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
 gi|316911702|gb|EFV33293.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486157|gb|EGC88611.1| DNA (cytosine-5-)-methyltransferase [Eggerthella sp. HGA1]
          Length = 447

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF GI          +     E    SEI+P+        FP+    GDI+K++ 
Sbjct: 1  MRYVSLFSGI----EAASCAWGPLGWEAVAFSEIDPFCNAVLATRFPSVPNLGDISKVEW 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
          +++  + DV++ G PCQ FS AG
Sbjct: 57 KEMRGEIDVVIGGSPCQSFSVAG 79


>gi|238917713|ref|YP_002931230.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238873073|gb|ACR72783.1| DNA (cytosine-5-)-methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 477

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIA 57
           LK+ DLFCG GG+ L   Q           +++I    V TY  N P    + ++ GDI 
Sbjct: 102 LKMLDLFCGAGGLSLGFTQ----EGFVTSLANDIQDCCVDTYAHNHPETPRDHIVLGDIK 157

Query: 58  KI--KTQDI---PDHDVLLAGFPCQPFSQA 82
            +     ++    + D+++ G PCQ FS A
Sbjct: 158 DVVKNLDELLAGRNVDIVVGGPPCQGFSMA 187


>gi|127429|sp|P06530|MTBR_BACSU RecName: Full=Modification methylase BsuRI; Short=M.BsuRI; AltName:
           Full=Cytosine-specific methyltransferase BsuRI
 gi|40247|emb|CAA26731.1| unnamed protein product [Bacillus subtilis]
          Length = 436

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
           + +  LF G GG+ L  E                           N       +++++  
Sbjct: 59  INVLSLFSGCGGLDLGFELAGLAAVIGEQAAMEAFKDKDRFNELRNKSIFHTIYTNDLFK 118

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY+ NFP  +I    DI ++K    P  +++L GFPC  FS+AG
Sbjct: 119 EANQTYKTNFPGHVIQHEKDIRQVKY--FPKCNLILGGFPCPGFSEAG 164


>gi|15920534|ref|NP_376203.1| modification methylase [Sulfolobus tokodaii str. 7]
 gi|15621317|dbj|BAB65312.1| 322aa long hypothetical modification methylase [Sulfolobus
          tokodaii str. 7]
          Length = 322

 Score = 93.7 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ 62
          + DLF G GG  L  ++       +  F+ +IN  + +TY  NFP TL I  DI  I  +
Sbjct: 5  VVDLFSGAGGFSLGFKK----LGFDIRFAIDINHAAARTYATNFPTTLVIEDDIRNITGR 60

Query: 63 DI-----PDHDVLLAGFPCQPFSQA 82
          DI        D+++   PC+P++ A
Sbjct: 61 DIEYLIGRKVDIVIGSPPCEPYTGA 85


>gi|325979448|ref|YP_004289164.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|325179376|emb|CBZ49420.1| DNA (cytosine-5-)-methyltransferase [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 333

 Score = 93.3 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  +LF G GG+ L +E+       E     E +  + +T + N PN  +I  D+A I 
Sbjct: 1  MKSIELFAGAGGLALGIEKA----GFETIGLIEFDSAAAETLKYNRPNWNVIHDDVANIS 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
            D+ D+        D+L  G PCQ FS AG
Sbjct: 57 KLDLEDYFSIRKGELDLLSGGAPCQSFSYAG 87


>gi|283796860|ref|ZP_06346013.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
 gi|291075266|gb|EFE12630.1| DNA (cytosine-5-)-methyltransferase [Clostridium sp. M62/1]
          Length = 547

 Score = 93.3 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG  L      +   +   ++SEI P+ +     NFP     GDI K+  
Sbjct: 5  ITMGSLFSGSGGFEL----AGSIFGIRPIWASEIEPFPILVTTKNFPEMKHLGDINKLNG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+    ++  G PCQ  S AG
Sbjct: 61 ADLEPVTIIAGGSPCQDMSIAG 82


>gi|209524941|ref|ZP_03273486.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494590|gb|EDZ94900.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 442

 Score = 93.3 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NTLIFGDI 56
              DLF GIGG R+ LE    +   +C   SEI   S++ Y+ NF      +    GD+
Sbjct: 15 FTFVDLFSGIGGFRIALE----NWGGKCLGYSEIAANSIQVYKQNFIRDANLDEPNLGDM 70

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +    +P   D++  G PCQP+S AG
Sbjct: 71 RSL--HKLPFTVDLITGGVPCQPWSIAG 96


>gi|291007577|ref|ZP_06565550.1| DNA-cytosine methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 418

 Score = 93.3 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQ----TFNHRNVECFFSSEINPYSVKTYQANF-----PNTLI 52
           + + DLF G GG      +               + E +  +  TY ANF         I
Sbjct: 8   INMIDLFAGCGGFTQGFREFRPPGGTTSPFRTVGAVEWDIAAASTYAANFAEEAGGTDHI 67

Query: 53  F-----GDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +     GDI       I D  DV+L G PCQ FS  G
Sbjct: 68  YAGREDGDIIHWNPGQIKDDVDVILGGPPCQGFSSLG 104


>gi|632681|gb|AAB31678.1| DNA (cytosine-5)-methyltransferase, m5C-MTase {BspRI
           restriction-modification system} [Escherichia coli,
           Peptide, 424 aa]
          Length = 424

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
             +  LFCG GG+ L  E                           +       ++++I  
Sbjct: 58  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 117

Query: 38  YSVKTYQANFPNT--LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN   +   DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 118 EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 163


>gi|328914001|gb|AEB65597.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 600

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            K+ DLF G GG+    EQT      E   + EIN  +++TY  N          P+   
Sbjct: 11  FKLVDLFAGAGGLSKGFEQTGC---FETIGAVEINQAAIETYVYNHGGNRDIIIRPDESD 67

Query: 53  FGDIAKIKTQDIPD---HD----VLLAGFPCQPFSQA 82
             DI+KI  +        D     ++ G PCQ FS A
Sbjct: 68  TSDISKIDFRKWKKSKNIDPNLLTIIGGPPCQGFSNA 104


>gi|255279956|ref|ZP_05344511.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
 gi|255269729|gb|EET62934.1| modification methylase AgeI [Bryantella formatexigens DSM 14469]
          Length = 475

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAK 58
           ++ DLFCG GG+ L   Q           +++I    V TY  N P      +I GDI  
Sbjct: 103 RLVDLFCGAGGLSLGFVQ----EGFAVSLANDIEECCVDTYAHNHPEVPESHIIRGDIHD 158

Query: 59  I--KTQDI---PDHDVLLAGFPCQPFSQA 82
           +  +  D+      D+++ G PCQ FS A
Sbjct: 159 VAGELDDLLADRRVDIVIGGPPCQGFSMA 187


>gi|308175642|ref|YP_003922347.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|307608506|emb|CBI44877.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens DSM
           7]
 gi|328555623|gb|AEB26115.1| DNA (cytosine-5)-methyltransferase [Bacillus amyloliquefaciens
           TA208]
          Length = 597

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
            K+ DLF G GG+    EQT      E   + EIN  +++TY  N          P+   
Sbjct: 8   FKLVDLFAGAGGLSKGFEQTGC---FETIGAVEINQAAIETYVYNHGGNRDIIIRPDESD 64

Query: 53  FGDIAKIKTQDIPD---HD----VLLAGFPCQPFSQA 82
             DI+KI  +        D     ++ G PCQ FS A
Sbjct: 65  TSDISKIDFRKWKKSKNIDPNLLTIIGGPPCQGFSNA 101


>gi|298286911|sp|P13906|MTB1_BACSH RecName: Full=Modification methylase BspRI; Short=M.BspRI; AltName:
           Full=Cytosine-specific methyltransferase BspRI
 gi|258593908|emb|CAA33764.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 424

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
             +  LFCG GG+ L  E                           +       ++++I  
Sbjct: 58  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 117

Query: 38  YSVKTYQANFPNT--LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN   +   DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 118 EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 163


>gi|283783021|ref|YP_003373775.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis
          409-05]
 gi|283441534|gb|ADB14000.1| DNA (cytosine-5-)-methyltransferase [Gardnerella vaginalis
          409-05]
          Length = 357

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
           + DLF G+GG+ L  E+           ++E +      Y  N   T ++ GDI  +  
Sbjct: 4  TVIDLFSGVGGLSLGFEE----EGFSVLLANEYDESIANAYMKNHKTTKMVVGDITSLDL 59

Query: 62 QDI-----PDHDVLLAGFPCQPFSQAG 83
            +        DV++ G PCQ FSQ G
Sbjct: 60 DAVFGTYKNKIDVIIGGPPCQGFSQKG 86


>gi|218244975|ref|YP_002370346.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
 gi|218165453|gb|ACK64190.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 8801]
          Length = 423

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L + +LF G GG+ L LE       ++     EI+   V T Q N P   I   D+ KI 
Sbjct: 73  LSVIELFAGCGGMALGLENA----GLKTELLVEIDRDCVNTLQKNRPYWPILQEDVTKID 128

Query: 61  TQDI-PDHDVLLAGFPCQPFSQAG 83
            +      D++  GFPCQ FS AG
Sbjct: 129 FRSYQGKIDIVSGGFPCQAFSYAG 152


>gi|228918462|ref|ZP_04081908.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228949261|ref|ZP_04111525.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228810387|gb|EEM56744.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228841185|gb|EEM86381.1| Modification methylase Sau3AI [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 413

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF-- 53
          M+ + +LF G+GG R+ LE+  +    +  + ++  P      +   Y   F +  I   
Sbjct: 1  MINVIELFAGVGGFRIGLEKIGH---FQIVWGNQWEPSKKAQDAFHCYAQRFQDKGIHCN 57

Query: 54 GDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
           DIA +  ++I   + ++++ GFPCQ +S A
Sbjct: 58 QDIATVTDEEIQKIEAEMIVGGFPCQDYSVA 88


>gi|332796494|ref|YP_004457994.1| DNA-cytosine methyltransferase [Acidianus hospitalis W1]
 gi|332694229|gb|AEE93696.1| DNA-cytosine methyltransferase [Acidianus hospitalis W1]
          Length = 323

 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          LK+ DLF G GG  L       ++      + +IN  + + Y  NFP+T++   DI  + 
Sbjct: 3  LKVVDLFSGAGGFSLGF----KNQGFNIALAIDINHAAARAYAQNFPSTVVLEEDIRNVT 58

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQA 82
           ++I D      D+L+   PC+ F+ A
Sbjct: 59 GEEIIDILGSSPDILIGSPPCEGFTAA 85


>gi|313665643|ref|YP_004047514.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
 gi|312949997|gb|ADR24593.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
          Length = 327

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           I DLF G GG+ L   Q     N E   + E    +V TY  NF   +   DI  +  +
Sbjct: 8  TIIDLFAGAGGLTLGFTQ----NNFEILDTVEFWQPAVDTYNYNFKKNITVKDITNLNVR 63

Query: 63 D------IPDHDVLLAGFPCQPFSQAG 83
                     D+++ GFPCQ FS AG
Sbjct: 64 QCLQDNYKSKTDLVIGGFPCQGFSMAG 90


>gi|289167263|ref|YP_003445530.1| type II DNA modification enzyme (methyltransferase
          cytosine-specific) [Streptococcus mitis B6]
 gi|288906828|emb|CBJ21662.1| type II DNA modification enzyme (methyltransferase
          cytosine-specific) [Streptococcus mitis B6]
          Length = 387

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNH------RNVECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  +       +    F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPGVTMIE 60

Query: 54 GDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
           DIA I    +          D+++ G PCQ FS  G
Sbjct: 61 EDIANIDEHFLKSKGISSKRVDLVIGGPPCQSFSTVG 97


>gi|310815203|ref|YP_003963167.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
 gi|308753938|gb|ADO41867.1| modification methylase XorII [Ketogulonicigenium vulgare Y25]
          Length = 437

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + EI+P     ++ NFP+  +    +  +  +D
Sbjct: 7  IDLFSGAGGMSLGFEQA----GFDVVAAVEIDPVHAAVHKFNFPDCAVIPRSVTDVSGED 62

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          I           DV+  G PCQ FS  G
Sbjct: 63 IRAEAGIGDQTVDVVFGGAPCQGFSLIG 90


>gi|153868905|ref|ZP_01998633.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152074513|gb|EDN71359.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 418

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
           + DLF G GG+   LE           F++EI P    TY+ N PNT L+ GD+ ++   
Sbjct: 33  LVDLFAGAGGLSCGLEMA----GFHPLFANEIEPVYANTYKHNHPNTDLVIGDVRQMCAS 88

Query: 63  DIP--------DHDVLLAGFPCQPFSQ 81
            +         + D+L  G PCQ FS 
Sbjct: 89  TLRERLGVKQGEIDLLAGGPPCQGFSI 115


>gi|186686332|ref|YP_001869528.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186468784|gb|ACC84585.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 331

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          L++ DLF G GG+ L  +            + +    ++  YQ NF + +   D+  +  
Sbjct: 14 LRVVDLFAGCGGLSLGFQNA----GFNIVAAFDNWKPAIDVYQKNFSHEIFDYDLNNLRK 69

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
            Q   +   ++++ G PCQ FS AG
Sbjct: 70 NYQIFREICPEIIIGGPPCQDFSSAG 95


>gi|18313899|ref|NP_560566.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
 gi|18161467|gb|AAL64748.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
          Length = 463

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 18/95 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------- 47
           ++  LF G GG+ L  + +      +  F++++N Y+  TY  NF              
Sbjct: 4  FRVVSLFSGAGGLDLGFKMSGM---YQIIFANDVNLYATTTYAKNFEMKLLKCGGLTEAE 60

Query: 48 PNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQ 81
          PN ++  D+ K+    +  + DV++ G PCQ FS 
Sbjct: 61 PNVVLSCDVEKVLFSPLAGEADVVVGGPPCQDFSI 95


>gi|308229522|gb|ADO24174.1| M.AclI [Acinetobacter calcoaceticus]
          Length = 458

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           LK   LF G GG+ L          V      E + +  + Y+ NF +T     DI  + 
Sbjct: 121 LKAISLFSGCGGLCLGFSAA----GVRIAGFIEKDKHISQIYRDNFSSTPQLANDITSLS 176

Query: 61  TQDIP-------DHDVLLAGFPCQPFSQAG 83
            +DI        + D+++ G PCQ FS +G
Sbjct: 177 HKDIEQYKDSIGEIDIVIGGPPCQGFSLSG 206


>gi|323650463|gb|ADX97312.1| M.FspI [Fischerella muscicola SAG 1427-1]
          Length = 385

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
          K+ DLF G GG+             E   + +++   + TY+ N+PNT +I  DI KI  
Sbjct: 4  KVIDLFAGAGGLTTGFHMA----GFESLCAIDVDAKPLATYKHNYPNTKIIHQDIRKINP 59

Query: 62 QDIP--------DHDVLLAGFPCQPFSQ 81
           D+         +   L+ G PCQ FS+
Sbjct: 60 SDLRLALGLQREELTALIGGPPCQGFSR 87


>gi|296329951|ref|ZP_06872435.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305676676|ref|YP_003868348.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296152990|gb|EFG93855.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305414920|gb|ADM40039.1| DNA (cytosine-5-)-methyltransferase [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 488

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN-HRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          L++ DLF G GG      Q  + +   E   + EIN  +  T + +     +I GDI   
Sbjct: 5  LRVLDLFAGGGGFSTGFLQANHPNLKFEIIRAVEINQAASDTLRGHLGSEKVIQGDITNS 64

Query: 60 KTQ-DI----PDHDVLLAGFPCQPFSQAG 83
            + +I     D DV++ G PCQ FS AG
Sbjct: 65 DVKKEIFQSCGDIDVVIGGPPCQTFSLAG 93


>gi|197105892|ref|YP_002131269.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
 gi|196479312|gb|ACG78840.1| DNA (cytosine-5-)-methyltransferase protein [Phenylobacterium
           zucineum HLK1]
          Length = 508

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFG---DIAK 58
           ++ DLF G GG+ L      + +  +   + E +P +  ++ ANF P     G   DI +
Sbjct: 34  RVLDLFSGCGGLSLGF----HAQGFDIVAAVEFDPAAAASHGANFHPEDPRHGRPRDITR 89

Query: 59  IKTQDIP----------DHDVLLAGFPCQPFSQAG 83
           +  + +             DVL+ G PCQ F++ G
Sbjct: 90  LTPEQLALELDLGPVEQAVDVLVGGPPCQAFARVG 124


>gi|323968851|gb|EGB64187.1| DNA-cytosine methyltransferase [Escherichia coli TA007]
          Length = 282

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          FSSE + ++ KTY AN+ +    GDI KI  +DIPDH++L+ GFPC  FSQAG
Sbjct: 1  FSSEWDKFAQKTYHANYGD-FPDGDITKIDEKDIPDHEILVGGFPCVAFSQAG 52


>gi|332668060|ref|YP_004450848.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
 gi|332336874|gb|AEE53975.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
          1100]
          Length = 395

 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKT 61
           + F GIG +RL LEQ       E  ++++I+P   K YQ +F    N    GDI ++  
Sbjct: 14 AEFFAGIGLMRLGLEQA----GWEITYANDIDPIKDKIYQNHFQDPQNHFQLGDIHQLDV 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          ++IP   +  A FPC   S AG
Sbjct: 70 KEIPYVTLATASFPCTDLSLAG 91


>gi|331091171|ref|ZP_08340013.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330405393|gb|EGG84929.1| hypothetical protein HMPREF9477_00656 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 375

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
              DL  GIGG+R   E T    N     ++EI+ Y+  TYQ  + +     D+   + 
Sbjct: 3  FTTIDLCAGIGGMRKGFELTGYFHN---VLAAEIDKYACMTYQHLYGDDANH-DLTSEEF 58

Query: 62 Q---DIPDHDVLLAGFPCQPFSQAG 83
          +   D   +DVLLAGFPCQ FS+AG
Sbjct: 59 KAELDTIQYDVLLAGFPCQTFSKAG 83


>gi|29028380|gb|AAO64731.1| EcoT38I methyltransferase [Escherichia coli]
          Length = 363

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--KTQ 62
            LF G GG+ +              ++++I+  +  T++ N  + +  GDI ++  +  
Sbjct: 7  VSLFTGAGGMDVGFSNA----GFRTVWANDIDKDACDTFKLNHESPVFCGDIDEMLSELS 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           + +   +  G PCQ FS AG
Sbjct: 63 GLKNIGCVFGGPPCQGFSVAG 83


>gi|186683285|ref|YP_001866481.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465737|gb|ACC81538.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 419

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            LF G+GG  L  +        E   + + NP ++ TYQ NFP+ T++  DI ++  ++
Sbjct: 12 VSLFSGVGGFDLGFKAA----GFEIAIAIDNNPIALATYQHNFPHATVLCKDIREVTGEE 67

Query: 64 IP------------DHDVLLAGFPCQPFSQAG 83
          I             +   +  G PCQ FS AG
Sbjct: 68 IRACIQAKYGDWDGEIHTVFDGPPCQGFSVAG 99


>gi|261415336|ref|YP_003249019.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371792|gb|ACX74537.1| DNA-cytosine methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326638|gb|ADL25839.1| cytosine specific DNA methyltransferase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 418

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+ + L +      ++   +SEI P + +T   N PN  + GDI+    +DI
Sbjct: 24  LSFFSGAMGLDIGLSKA----GIKVLLASEIEPNARRTILTNEPNIGLIGDISDYSAEDI 79

Query: 65  P---------DHDVLLAGFPCQPFSQAG 83
                     + DV++ G PCQ FS AG
Sbjct: 80  RKYANLPKNQEIDVMVGGPPCQAFSTAG 107


>gi|163761361|ref|ZP_02168435.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
          phototrophica DFL-43]
 gi|162281356|gb|EDQ31653.1| C-5 cytosine-specific DNA methylase family protein [Hoeflea
          phototrophica DFL-43]
          Length = 376

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 18/93 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFG- 54
          LK+ DLF G GG  L   +       E  F+ E +  +  T++ N        N +++  
Sbjct: 3  LKVVDLFAGAGGFSLAAVRA----GCEIVFAVEFDKNAATTFRNNIGADHRSKNVVVYNR 58

Query: 55 DIAKIKT-----QDIP--DHDVLLAGFPCQPFS 80
          DI  +       +  P  D D+LL G PCQ FS
Sbjct: 59 DITSLSASALAKKHFPASDCDLLLGGPPCQGFS 91


>gi|258593909|emb|CAA33765.2| DNA(cytosine-5)methyltransferase [Lysinibacillus sphaericus]
          Length = 396

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
             +  LFCG GG+ L  E                           +       ++++I  
Sbjct: 30  FNVLSLFCGAGGLDLGFELAGLEQSLGTDKALEAFKDRDVYNAIRHESVFHTVYANDIFS 89

Query: 38  YSVKTYQANFPNT--LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +++TY+ N PN   +   DI KIK  + P  ++++ GFPC  FS+AG
Sbjct: 90  EALQTYEKNMPNHVFIHEKDIRKIK--EFPSANLVIGGFPCPGFSEAG 135


>gi|127453|sp|P25267|MTG1_HERAU RecName: Full=Modification methylase HgiGI; Short=M.HgiGI;
          AltName: Full=Cytosine-specific methyltransferase HgiGI
 gi|43475|emb|CAA38947.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 126

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L   Q       E   + +    ++ TYQ NF + +   D+A++  
Sbjct: 1  MKTIDLFAGCGGMSLGFMQA----GFEIVAAVDNWRPAITTYQQNFIHPIHELDLAEVDE 56

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
                    ++++ G PCQ FS AG
Sbjct: 57 AISLIKTYSPELIIGGPPCQDFSSAG 82


>gi|282897137|ref|ZP_06305139.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
 gi|281197789|gb|EFA72683.1| C-5 cytosine-specific DNA methylase [Raphidiopsis brookii D9]
          Length = 435

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
           DLF G GG+ L +E        E   S EI+P     +  NFPN   I  DI+ + +++
Sbjct: 15 IDLFSGAGGLSLGIESA----GFEVVISIEIDPVHSAIHNYNFPNCANICRDISNVSSEE 70

Query: 64 ---------IPDHDVLLAGFPCQPFSQAG 83
                   I + D+L  G PCQ FSQ G
Sbjct: 71 LWNILNDKHINEVDLLAGGPPCQGFSQMG 99


>gi|282598683|ref|YP_003358780.1| gp77 [Mycobacterium phage Peaches]
 gi|255928210|gb|ACU41828.1| gp77 [Mycobacterium phage Peaches]
 gi|302858592|gb|ADL71338.1| gp78 [Mycobacterium phage Eagle]
          Length = 177

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G GG+ L +E+ F     +  +  E+   +       F      GD++K+   
Sbjct: 6  RIGSLFSGAGGLDLAVEEVF---GGQTIWQVEVEKAAATLLAKRFG-VPNLGDVSKVNWH 61

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          ++P  D+L  GFPCQ  S AG
Sbjct: 62 EVPAVDILCGGFPCQDVSPAG 82


>gi|332706962|ref|ZP_08427022.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332354227|gb|EGJ33707.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 450

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 15/94 (15%)

Query: 1   MLKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIA 57
           ++K     LFCG GG  L  +Q          ++++ +  +V+TY+ NF  +L    DI 
Sbjct: 25  LMKHTAISLFCGAGGCSLGFKQA----GYSIVYANDKDAAAVETYRINFTESLCSNEDID 80

Query: 58  KIKT----QDI----PDHDVLLAGFPCQPFSQAG 83
            +       +I     + D+L+ G PCQ FS AG
Sbjct: 81  NLDFGQVLSEIVMKPGELDILIGGPPCQGFSTAG 114


>gi|296392544|ref|YP_003657428.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296179691|gb|ADG96597.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 314

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKI 59
          ++ DLF G GG+ L  E        E   + +  P ++  Y+ NF +    L  GD+  +
Sbjct: 11 RLLDLFAGCGGLSLGFESA----GFEVALAVDNWPEALAVYRRNFRHRAVELDLGDV-DL 65

Query: 60 KTQDIPDH----DVLLAGFPCQPFSQAG 83
           +  + +     D ++ G PCQ FS AG
Sbjct: 66 ASSALRECAAEVDGIIGGPPCQDFSSAG 93


>gi|197301928|ref|ZP_03166992.1| hypothetical protein RUMLAC_00650 [Ruminococcus lactaris ATCC
          29176]
 gi|197298996|gb|EDY33532.1| hypothetical protein RUMLAC_00650 [Ruminococcus lactaris ATCC
          29176]
          Length = 134

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    +LF G GG+ L +E+       +    +E N  +  T + N PN  +I GD+A+I
Sbjct: 1  MFTTIELFAGAGGLALGIEKA----GFKTLALNEFNADACATLRKNRPNWNVIEGDVAEI 56

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ ++        D+L  G PCQ FS AG
Sbjct: 57 SGLDLEEYFSVRKGELDLLSGGAPCQAFSYAG 88


>gi|308814119|ref|XP_003084365.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
 gi|116056249|emb|CAL58430.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
          Length = 625

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF GIGG  + LE+  +          E +P   +  +  FP+  +  D+A++  
Sbjct: 4  LRVASLFAGIGGFDVGLERAGH----RVVLQVEKDPRCRRVLKRRFPDVALVRDVAEVLP 59

Query: 62 QDIPDHDVLLAGFPCQPFS 80
            +   D+L+AGFPC   S
Sbjct: 60 HALDGVDLLVAGFPCNDCS 78


>gi|170077471|ref|YP_001734109.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
 gi|169885140|gb|ACA98853.1| site-specific DNA-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 413

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLF G GG+ L LE        +   + EI+P     ++ NFP       DI  ++  +
Sbjct: 8  IDLFAGCGGMSLGLEAA----GFDVVAAVEIDPVHALVHEVNFPYGVTFCRDIRHLQWPE 63

Query: 64 IP-----------DHDVLLAGFPCQPFSQAG 83
          +            D D+L  G PCQ FS  G
Sbjct: 64 MRQAIERRGYSTADIDLLTGGPPCQGFSVMG 94


>gi|317127844|ref|YP_004094126.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472792|gb|ADU29395.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 360

 Score = 92.5 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 1  ML-KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          M+ ++ DLF G GGI             +     + NP +V+T+  NF N+  I  DI +
Sbjct: 1  MIPRVIDLFSGCGGISEGFRLA----GFDILGGLDFNPDAVETFHQNFLNSRAICADIQE 56

Query: 59 IKTQDI-------PDHDVLLAGFPCQPFSQA 82
          IK  +I        D DV++ G PCQ FS A
Sbjct: 57 IKNDEITYMFDLTGDIDVIVGGPPCQGFSSA 87


>gi|240143787|ref|ZP_04742388.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
          intestinalis L1-82]
 gi|257204222|gb|EEV02507.1| Phi-3T prophage-derived modification methylase Phi3TI [Roseburia
          intestinalis L1-82]
          Length = 333

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          D FCG GG+ +           +   + + + Y+V++Y  N  + +   DI ++  QD+P
Sbjct: 7  DFFCGCGGMGVGFLNA----GYKIAGAWDFDKYAVQSYDHNVGHHVKQADIKEMTWQDVP 62

Query: 66 DHDVLLAGFPCQPFSQAG 83
             V   GFPCQ  S AG
Sbjct: 63 FAHVWAFGFPCQDLSVAG 80


>gi|239624756|ref|ZP_04667787.1| DNA-cytosine methyltransferase [Clostridiales bacterium
          1_7_47_FAA]
 gi|239521142|gb|EEQ61008.1| DNA-cytosine methyltransferase [Clostridiales bacterium
          1_7_47FAA]
          Length = 420

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPN--TLIFGD 55
           + +LF G+GG RL L+ +      E  + S+  P     ++   Y  ++ +       D
Sbjct: 4  TVCELFAGVGGFRLGLQHS--SPQWETVWFSQWEPGRKKQWAHDCYVKHWGDIDERTGQD 61

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          IA +    IPDH +L+ GFPCQ +S A
Sbjct: 62 IASVDKTAIPDHTLLVGGFPCQNYSVA 88


>gi|91205699|ref|YP_538054.1| cytosine-C5 specific DNA methylase-like protein [Rickettsia bellii
           RML369-C]
 gi|91069243|gb|ABE04965.1| Cytosine-C5 specific DNA methylase-like protein [Rickettsia bellii
           RML369-C]
          Length = 147

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 25/107 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-----------------------HRNVECFFSSEINPY 38
           +K+  LF G GG+ L  E  FN                           E  F ++I   
Sbjct: 31  IKVISLFSGCGGLDLGFEGNFNIHESCIKDDDFIKSKNGNTVILKDNPFEIVFCNDIMQE 90

Query: 39  SVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +   ++ANF N L +    I ++K   +P  D+++ GFPCQ FS AG
Sbjct: 91  AKVAWEANFSNKLEYSTKSIRELKGYLLPKADLVIGGFPCQDFSLAG 137


>gi|294782269|ref|ZP_06747595.1| modification methylase Sau3AI [Fusobacterium sp. 1_1_41FAA]
 gi|294480910|gb|EFG28685.1| modification methylase Sau3AI [Fusobacterium sp. 1_1_41FAA]
          Length = 423

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 15/96 (15%)

Query: 2  LKITDLFCGIGGIRLDLE---------QTFNHRNVECFFSSEINP-----YSVKTYQANF 47
          L + +LF G+GG R+ L          +   +   E  ++++  P     Y+   Y   F
Sbjct: 3  LTVIELFAGVGGFRVGLNNIIKIDSQNKAVENGKWEFIWANQFEPSTKAQYAFDCYVTRF 62

Query: 48 PNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
              I   DI K+K   IP H +L+ GFPCQ +S A
Sbjct: 63 GKENISNEDINKVKKNLIPKHSLLVGGFPCQDYSVA 98


>gi|307140960|ref|ZP_07500316.1| DNA-cytosine methyltransferase [Escherichia coli H736]
 gi|331645014|ref|ZP_08346131.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
 gi|331035989|gb|EGI08227.1| DNA cytosine methyltransferase M.NgoMIII [Escherichia coli H736]
          Length = 413

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPN----TLIF 53
          +K  +LF G GG+ +  E        E     E + ++  T + N    FP      L  
Sbjct: 12 MKSVELFAGAGGLAMGCEIA----GFEHLAVVEWDKWACDTVRENKKNGFPLLSDWDLFE 67

Query: 54 GDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
          GD+ +     IP   D+L  G PCQPFS  G
Sbjct: 68 GDVREFDWSKIPKGIDLLAGGPPCQPFSIGG 98


>gi|40850587|gb|AAR96017.1| M2.BsaI [Geobacillus stearothermophilus]
          Length = 381

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
             DLF G GG+ L           +   +++I+ +++ TY  N  N ++ GDI   K  +
Sbjct: 126 FVDLFSGAGGLSLGFLWA----GWKPIIANDIDKWALTTYMNNIHNEVVLGDIRDEKVSE 181

Query: 64  I------------PDHDV-LLAGFPCQPFSQAG 83
                        PD  + +L G PCQ FS AG
Sbjct: 182 TIIQKCLIAKKSNPDRPLFVLGGPPCQGFSTAG 214


>gi|319787207|ref|YP_004146682.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis
          11-1]
 gi|317465719|gb|ADV27451.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis
          11-1]
          Length = 443

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + EI+P     +  NFP+  +    +  +  Q 
Sbjct: 7  IDLFAGAGGLSLGFEQA----GFDVVAAVEIDPVHAAVHAYNFPHCAVLPRSVTDLTAQH 62

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          I D         DV+  G PCQ FS  G
Sbjct: 63 IRDAAGIGTRKVDVVFGGAPCQGFSLIG 90


>gi|166163613|gb|ABY83631.1| DNA methyltransferase Cfr42I [Citrobacter freundii]
          Length = 402

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPN----TLIF 53
          +K  +LF G GG+ +  E        E     E + ++  T + N    FP      L  
Sbjct: 1  MKSVELFAGAGGLAMGCEIA----GFEHLAVVEWDKWACDTVRENKKSGFPLLSDWDLFE 56

Query: 54 GDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
          GD+ +     IP   D+L  G PCQPFS  G
Sbjct: 57 GDVREFDWSKIPKGIDLLAGGPPCQPFSIGG 87


>gi|197124335|ref|YP_002136286.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
 gi|196174184|gb|ACG75157.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
          Length = 508

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
             DLFCG GG  L               + +I+  + +TY+ NF          ++ GD
Sbjct: 7  TFIDLFCGAGGFSLGFRAAGALS----LAAVDIDEVAARTYRRNFGKLQPGMAPHVLSGD 62

Query: 56 IAKIKTQDIPDH------DVLLAGFPCQPFSQAG 83
          +  ++  D+         D+L+ G PCQ FS+ G
Sbjct: 63 LGNLEEIDLGSIVHERTLDILIGGPPCQGFSRIG 96


>gi|119485563|ref|ZP_01619838.1| modification methylase [Lyngbya sp. PCC 8106]
 gi|119456888|gb|EAW38015.1| modification methylase [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLF G GG+ L L+Q           + +    ++K YQ NF + +  G++ +++T
Sbjct: 1  MRVVDLFAGCGGLSLGLQQA----GFNIVAAFDDWESAIKVYQKNFAHPIFSGNLQEVQT 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
              I     +V++ G PCQ FS AG
Sbjct: 57 AVDLIKPFSPNVIVGGPPCQDFSSAG 82


>gi|327463101|gb|EGF09422.1| modification methylase DdeI [Streptococcus sanguinis SK1]
          Length = 351

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            I DLF G GG+    E              + +  +++T++ N  N  ++ GDI  I 
Sbjct: 4  YNIIDLFSGAGGLSYGFEAA----GFNVLLGIDNDEKALETFRKNHKNSKVLCGDITNIS 59

Query: 61 -TQDIP------DHDVLLAGFPCQPFSQAG 83
            +DI         D+++ G PCQ  S +G
Sbjct: 60 YEEDIKPIIGEQKVDLIVGGPPCQGMSLSG 89


>gi|331091845|ref|ZP_08340677.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402744|gb|EGG82311.1| hypothetical protein HMPREF9477_01320 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 410

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I 
Sbjct: 77  FTTIELFAGAGGLALGIEKA----GFEPVGLIEFDKDAAESLKTNRPNWRVIHDDIANIS 132

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ D+        D+L  G PCQ FS AG
Sbjct: 133 CLDLEDYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|254293303|ref|YP_003059326.1| DNA-cytosine methyltransferase [Hirschia baltica ATCC 49814]
 gi|254041834|gb|ACT58629.1| DNA-cytosine methyltransferase [Hirschia baltica ATCC 49814]
          Length = 383

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 3  KITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
          ++ + F G GG  +  LE +F+     C F+++ +P   +TY ANF P      D+  + 
Sbjct: 14 RVLEFFAG-GGFAIKGLEDSFH-----CVFANDNDPLKSRTYTANFGPTHFDTSDVWTLD 67

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IP+ ++  A FPCQ  S AG
Sbjct: 68 ANHIPNAELAWASFPCQDISIAG 90


>gi|110800293|ref|YP_695463.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
 gi|110674940|gb|ABG83927.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
          Length = 407

 Score = 92.1 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 12/90 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNT-LIFGDI 56
           + +LF G+GG  L L +     + E  ++++  P     ++ + Y  +FP T  +  DI
Sbjct: 6  TVCELFAGVGGFHLGLSKA--SADWEVLWANQWEPSRKVQHAFECYAKHFPKTNAVNEDI 63

Query: 57 AKIKTQD----IPDHDVLLAGFPCQPFSQA 82
          A +        +P +++L+ GFPCQ +S A
Sbjct: 64 ALVNENPEAFGLPKYNLLVGGFPCQDYSVA 93


>gi|242237482|ref|YP_002985663.1| DNA-cytosine methyltransferase [Dickeya dadantii Ech703]
 gi|242129539|gb|ACS83841.1| DNA-cytosine methyltransferase [Dickeya dadantii Ech703]
          Length = 465

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+ L +E+       +   + EI+ Y  +T   N P+  +  DI      DI
Sbjct: 78  LSFFSGAMGLDLGIEKA----GFDIRLACEIDKYCRQTISLNKPDIALLSDINDYSAMDI 133

Query: 65  ---------PDHDVLLAGFPCQPFSQAG 83
                     D D+++ G PCQ FS AG
Sbjct: 134 IKAAKISPDTDIDLVMGGPPCQAFSTAG 161


>gi|16331413|ref|NP_442141.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
 gi|1001584|dbj|BAA10211.1| cytosine-specific methyltransferase [Synechocystis sp. PCC 6803]
          Length = 424

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLF G GG+ L LE        +   + E +      +  NFP    I  DIA +   +
Sbjct: 7  IDLFAGCGGMSLGLEAA----GFDIAAAVEFDAVHCLVHHHNFPYGVTICRDIALVSAGE 62

Query: 64 I----------PDHDVLLAGFPCQPFSQAG 83
          I           D D++  G PCQ FS  G
Sbjct: 63 ILRKLNNKGYSSDIDLIAGGPPCQGFSLMG 92


>gi|288922732|ref|ZP_06416903.1| C-5 cytosine-specific DNA methylase [Frankia sp. EUN1f]
 gi|288345909|gb|EFC80267.1| C-5 cytosine-specific DNA methylase [Frankia sp. EUN1f]
          Length = 174

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  L  G GG+ L + Q          + ++ +P + +    ++P+    GDI  +  
Sbjct: 8  LRVGSLCSGYGGLDLAVHQV---IGGRLAWVADPDPGAARILARHWPDVPNHGDITAVDW 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D+L AGFPCQP+S AG
Sbjct: 65 TTVEPIDLLTAGFPCQPWSDAG 86


>gi|317473510|ref|ZP_07932802.1| C-5 cytosine-specific DNA methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899021|gb|EFV21043.1| C-5 cytosine-specific DNA methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 385

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   DLF G GG+ L  +            + E    + K Y+ NF + +   D++ +K+
Sbjct: 1  MNTVDLFAGCGGMSLGFQNA----GFNLVAAFEFWDIAAKCYEENFNHPVFKSDLSNVKS 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
            + I     ++++ G PCQ FS AG
Sbjct: 57 AVEQIRRFSPELIIGGPPCQDFSHAG 82


>gi|218135211|ref|ZP_03464015.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990596|gb|EEC56607.1| hypothetical protein BACPEC_03116 [Bacteroides pectinophilus ATCC
          43243]
          Length = 344

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    +LF G GG+ L +E+             E +  +  T + N PN  +I  DIA I
Sbjct: 1  MYTSIELFAGAGGLALGVEKA----GFNTLGLIEFDKDAADTLKKNRPNWNVINDDIANI 56

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+  +        D+L  G PCQ FS AG
Sbjct: 57 SCLDLEKYFSIKKGELDLLSGGAPCQAFSYAG 88


>gi|291549830|emb|CBL26092.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 410

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I 
Sbjct: 77  FTTIELFAGAGGLALGIEKA----GFETLGLVEFDKDAAESLKTNRPNWRVIHDDIANIS 132

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ ++        D+L  G PCQ FS AG
Sbjct: 133 CMDLEEYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|210630924|ref|ZP_03296669.1| hypothetical protein COLSTE_00554 [Collinsella stercoris DSM 13279]
 gi|210160239|gb|EEA91210.1| hypothetical protein COLSTE_00554 [Collinsella stercoris DSM 13279]
          Length = 931

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNH----------RNVECFFSSEINP-------YSVKTYQ 44
           +++ +LF G+GG RL LE   N                 ++++  P       ++ + Y+
Sbjct: 511 IRVAELFAGVGGFRLGLEGYSNEDRPEFSMPAAGPFVTVWANQWEPQGAPTRQFAARCYE 570

Query: 45  ANFP-NTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   +++  DI  +         DIPD D+++ GFPCQ +S A
Sbjct: 571 ERFGYGSVVNEDIHVVLDAYEAGKIDIPDVDMVVGGFPCQDYSVA 615


>gi|328958689|ref|YP_004376075.1| DNA-methyltransferase [Carnobacterium sp. 17-4]
 gi|328675013|gb|AEB31059.1| DNA-methyltransferase [Carnobacterium sp. 17-4]
          Length = 431

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTL-IFGD 55
            I +LF G+GG R+  E +      +  ++++  P      + + Y  ++P ++ I  +
Sbjct: 5  FNILELFAGVGGFRVGFENSNESM-FKTKWANQWEPAKKSQDAFEVYDYHYPESMNINEN 63

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          I +I  +     D D+++ GFPCQ +S A
Sbjct: 64 IEEISDEAFQSMDADIIVGGFPCQDYSVA 92


>gi|119026251|ref|YP_910096.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765835|dbj|BAF40014.1| modification methylase Sau3AI [Bifidobacterium adolescentis ATCC
           15703]
          Length = 424

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR----------NVECFFSSEINP-------YSVKTYQ 44
           +K+ +LF G+GG RL L+   N +          N    +++   P       ++ + Y+
Sbjct: 5   IKVVELFAGVGGFRLGLDGYSNPKYPDFEMKPAGNFHTVWANNWEPDGRPTKQFAWRCYE 64

Query: 45  ANFPN-TLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA +  Q      ++P+ D+L+ GFPCQ +S A
Sbjct: 65  KRFGEGSCVNEDIAVVVEQIKNGERELPEFDMLVGGFPCQDYSVA 109


>gi|291528318|emb|CBK93904.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 344

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    +LF G GG+ L +E+             E +  +  T + N PN  +I  DIA I
Sbjct: 1  MYTSIELFAGAGGLALGVEKA----GFNTLGLIEFDKDAADTLKKNRPNWNVINDDIANI 56

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+  +        D+L  G PCQ FS AG
Sbjct: 57 SCLDLEKYFSIKKGELDLLSGGAPCQAFSYAG 88


>gi|312200624|ref|YP_004020685.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
 gi|311231960|gb|ADP84815.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
          Length = 391

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++  L  GIG + L LE+      +      E +P+  +    ++P      D+     
Sbjct: 1  MRVLSLCSGIGALDLGLERA----GLTTVGQVERDPFCQRVLARHWPEVPRHDDVLTTTE 56

Query: 62 Q-----DIPDHDVLLAGFPCQPFSQAG 83
                D P  DV+  GFPCQP S AG
Sbjct: 57 WWTAQPDRPTVDVVAGGFPCQPASVAG 83


>gi|317509458|ref|ZP_07967076.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316252287|gb|EFV11739.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 321

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDI--- 56
          ++ DLF G GG+ L  E        E   + +  P ++  Y+ NF +    L  GD+   
Sbjct: 11 RLLDLFSGCGGLSLGFEAA----GFEVAAAVDNWPEALAVYRRNFRHPAIELDLGDVDLA 66

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + ++     D ++ G PCQ FS AG
Sbjct: 67 KAVLSEWTAGVDGIIGGPPCQDFSSAG 93


>gi|284052894|ref|ZP_06383104.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835469|gb|ABB52095.1| Mod [Arthrospira platensis]
 gi|291565921|dbj|BAI88193.1| type II DNA modification methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 314

 Score = 91.7 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          ++  DLF G GG+ L  +        +   + EI   ++K YQ NF + +   D++K   
Sbjct: 1  MRTIDLFAGCGGLSLGFQNA----GFDMKAAFEIWKPAIKVYQRNFSHPIFQVDLSKESV 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I T      +V++ G PCQ FS AG
Sbjct: 57 INTLGEWKPEVIIGGPPCQDFSSAG 81


>gi|329767389|ref|ZP_08258914.1| hypothetical protein HMPREF0428_00611 [Gemella haemolysans M341]
 gi|328836078|gb|EGF85769.1| hypothetical protein HMPREF0428_00611 [Gemella haemolysans M341]
          Length = 144

 Score = 91.4 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G+GG+             E   ++E++     +Y+ N P   +I  DI+K+   
Sbjct: 5  VIDLFSGVGGLSKGF----FDSGFEIVLANEVDYSIANSYKKNHPKVKMINEDISKLDID 60

Query: 63 DI----PDHDVLLAGFPCQPFSQAG 83
          D+     + DV++ G PCQ FSQ G
Sbjct: 61 DVFNEYKNIDVIVGGPPCQGFSQKG 85


>gi|115345708|ref|YP_771887.1| DNA-cytosine methyltransferase, putative [Roseobacter
          denitrificans OCh 114]
 gi|115293028|gb|ABI93479.1| DNA-cytosine methyltransferase, putative [Roseobacter
          denitrificans OCh 114]
          Length = 394

 Score = 91.4 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M K  + F G G  R  L         +C F+++ +     TY+ N+ +  +I  DI  I
Sbjct: 10 MFKFYEFFAGGGMARAGL-----GEGWKCEFANDFDRKKGATYKKNWGDGEMIVDDIRNI 64

Query: 60 KTQDIPDH-DVLLAGFPCQPFS 80
             D+P H D++   FPCQ  S
Sbjct: 65 GLDDLPGHADLVWGSFPCQDLS 86


>gi|325971313|ref|YP_004247504.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
 gi|324026551|gb|ADY13310.1| DNA-cytosine methyltransferase [Spirochaeta sp. Buddy]
          Length = 516

 Score = 91.4 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ DLF G GG+    +      N     + E N Y+ +T + N   T +  D+  +  
Sbjct: 3  YRVLDLFAGAGGLSQGFKNAG---NFSIAVAIENNKYAQETCRENHKETTMLSDV--LDY 57

Query: 62 QDIPD-------HDVLLAGFPCQPFSQA 82
           D  D        DV++ G PCQ FS A
Sbjct: 58 SDFSDFKTKYGEFDVVIGGPPCQGFSNA 85


>gi|213586034|ref|ZP_03367860.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 112

 Score = 91.4 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 24/92 (26%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 25  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 80

Query: 58  KIKT----------------QDIPDHDVLLAG 73
            I                  Q IP HDVLLAG
Sbjct: 81  DITLSHREGVSDDEAAEHIRQHIPQHDVLLAG 112


>gi|308229532|gb|ADO24181.1| M.ApaI [Acetobacter pasteurianus subsp. pasteurianus]
          Length = 349

 Score = 91.4 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  DLF G GG+ L +     H  +E     E N  +V TY A+ P+      DI  I 
Sbjct: 1  MKALDLFSGPGGLSLGM----KHAGIEPVACVEKNKDAVSTYDAHTPDAEHYCSDIRSIS 56

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
           +      D++  G PCQPFS  G
Sbjct: 57 FERYRGLVDIVFGGPPCQPFSTGG 80


>gi|328946815|gb|EGG40952.1| modification methylase DdeI [Streptococcus sanguinis SK1087]
          Length = 387

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNH------RNVECFFSSEINPYSVKTYQANFPN-TLIF 53
          M+++ DLF G GG+    + T  +       +    F++E N  + + ++ N+P  T+I 
Sbjct: 1  MIEVVDLFSGAGGLTFGFQNTIKNNKFVSRNDFNIRFANEFNHDAAEAFRQNYPRVTMIE 60

Query: 54 GDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
           DIA I    +          D+++ G PCQ FS  G
Sbjct: 61 EDIANIDKHFLKSKGISSKRVDLVIGGPPCQSFSTVG 97


>gi|34451616|gb|AAQ72364.1| methylase fusion protein [Geobacillus stearothermophilus]
          Length = 1007

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           K  DLFCG GG+    ++      ++    ++I   +  T + N P   ++ GDI++ +T
Sbjct: 774 KSIDLFCGAGGLTAGFKEA----GIQSVLCNDIEESACITLKINNPEIKVLCGDISQHET 829

Query: 62  QD------I-PDHDVLLAGFPCQPFSQAG 83
           ++      I  D D++  G PCQ FS AG
Sbjct: 830 KEHIVNVAINEDVDIICGGPPCQGFSMAG 858


>gi|317495998|ref|ZP_07954360.1| DNA-cytosine methyltransferase [Gemella moribillum M424]
 gi|316913902|gb|EFV35386.1| DNA-cytosine methyltransferase [Gemella moribillum M424]
          Length = 415

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 16/95 (16%)

Query: 4  ITDLFCGIGGIRLDLEQ----------TFNHRNVECFFSSEINP-----YSVKTYQANFP 48
          + +LF G+GG R+ L                      ++++  P     ++ + Y   F 
Sbjct: 5  VVELFAGVGGFRVGLNNITDFRKKDGCAIEKNGWNFVWANQYEPSTKAQHAFECYSKRFQ 64

Query: 49 -NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                 DI K+  + IP+H +L+ GFPCQ +S A
Sbjct: 65 IGECSNEDINKVDKKTIPNHSLLVGGFPCQDYSVA 99


>gi|319639602|ref|ZP_07994349.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399173|gb|EFV79847.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 327

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 25/95 (26%)

Query: 2  LKITDLFC----------------GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
          LK+  LFC                G         QT+     E  ++ + + ++V+TY A
Sbjct: 5  LKVVSLFCGCGGSDLGLLGGFEYLG---------QTYPKLPFEIVYALDFDKFAVQTYNA 55

Query: 46 NFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          NF +  I  DI  +  Q++ D D+LL GFPCQ FS
Sbjct: 56 NFEHPAICDDIKNLNIQELDDFDLLLGGFPCQSFS 90


>gi|317127845|ref|YP_004094127.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315472793|gb|ADU29396.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 363

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----GDIAK 58
          KI DLF G+GG  L  E        E   + +    +++TY  N  N +       D++K
Sbjct: 5  KIIDLFSGVGGFSLGFEMA----GYETVLAIDFWKDAIETYNHNRENKVAEVMSIHDLSK 60

Query: 59 IKTQDIP-DHDV--LLAGFPCQPFSQAG 83
           + + +  DH +  ++ G PCQ FS  G
Sbjct: 61 ERLEKLKSDHTIEGIIGGPPCQGFSTVG 88


>gi|153855943|ref|ZP_01996894.1| hypothetical protein DORLON_02919 [Dorea longicatena DSM 13814]
 gi|149751791|gb|EDM61722.1| hypothetical protein DORLON_02919 [Dorea longicatena DSM 13814]
          Length = 433

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 15/95 (15%)

Query: 1  MLKIT-DLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIF- 53
          M K   +LF G+GG RL  ++       E  + S+  P     ++   Y  ++ +     
Sbjct: 1  MKKTICELFAGVGGFRLGFDKL--ESGWETTWFSQWEPGKKKQWAHDCYVYHYGDCADLK 58

Query: 54 ------GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                 DI+++   +IP+H++L+ GFPCQ +S A
Sbjct: 59 GEFHTGEDISQMNKNNIPNHNLLVGGFPCQDYSVA 93


>gi|67924379|ref|ZP_00517809.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67853772|gb|EAM49101.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 435

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G+GG+ L  EQ       +   S EI+P     ++ NFP  T I   +  IK  +
Sbjct: 9  VDLFAGVGGMTLGFEQA----GFDVLASVEIDPIHCSIHRYNFPFWTTICASVTSIKASE 64

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          I +         DV+  G PCQ FS  G
Sbjct: 65 IRELSTIKNKPIDVVFGGPPCQGFSLMG 92


>gi|169826094|ref|YP_001696252.1| modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
 gi|168990582|gb|ACA38122.1| Modification methylase BsuRI [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
             +  LF G GG+ L  E                           +       +++++  
Sbjct: 59  YNVVGLFSGCGGLDLGFELAGLIAEIGEENAMTAFKNKEKFDEIRHKSVFNTIYTNDMFK 118

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY+ NFP+ +I    DI K+   + P  +++L GFPC  FS+AG
Sbjct: 119 EANETYKLNFPDHIIQHEKDIRKV--ANFPMCNLMLGGFPCPGFSEAG 164


>gi|70725582|ref|YP_252496.1| hypothetical protein SH0581 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68446306|dbj|BAE03890.1| shlA1M [Staphylococcus haemolyticus JCSC1435]
          Length = 412

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANF-PNTLIFGD 55
          LK+ +LF G+GG RL LE T      +  ++++  P     ++   Y + F     +  D
Sbjct: 4  LKVAELFAGVGGFRLGLENTKEKI-FDVTWANQWEPSKKIQHAFDCYNSRFITGEHVNKD 62

Query: 56 IAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
          IA I  ++I     D+++ GFPCQ +S A
Sbjct: 63 IALISDEEIANTKADMVVGGFPCQDYSVA 91


>gi|209527695|ref|ZP_03276192.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209491867|gb|EDZ92225.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 314

 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++  DLF G GG+ L  E        +   + EI   ++K YQ NF + +   D+++   
Sbjct: 1  MRTIDLFAGCGGLSLGFENA----GFDIKAAFEIWQPAIKVYQRNFRHPIFQVDLSEESV 56

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
             + ++  +V++ G PCQ FS AG
Sbjct: 57 IHTLREYKPEVIIGGPPCQDFSSAG 81


>gi|94990422|ref|YP_598522.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94543930|gb|ABF33978.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10270]
          Length = 110

 Score = 91.0 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGF 74
            QD        D++  GF
Sbjct: 60 TDQDFRQLRGQVDIICGGF 78


>gi|313678719|ref|YP_004056459.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
 gi|312950602|gb|ADR25197.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma bovis PG45]
          Length = 324

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA------ 57
          I DLF G GG+ L   Q     N +   + E    +V TY  NF   ++  DI       
Sbjct: 6  IIDLFAGAGGLTLGFTQ----NNFDILDTIEFWQPAVDTYNFNFKKNVVAKDITDSEVRN 61

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++++      D+++ GFPCQ FS AG
Sbjct: 62 ELESNWKNKTDLVIGGFPCQGFSLAG 87


>gi|306817606|ref|ZP_07451349.1| modification methylase Eco47II [Mobiluncus mulieris ATCC 35239]
 gi|307699879|ref|ZP_07636930.1| DNA binding domain protein, excisionase family [Mobiluncus mulieris
           FB024-16]
 gi|304649648|gb|EFM46930.1| modification methylase Eco47II [Mobiluncus mulieris ATCC 35239]
 gi|307614917|gb|EFN94135.1| DNA binding domain protein, excisionase family [Mobiluncus mulieris
           FB024-16]
          Length = 424

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               DLF G GG  L LE             SE++  +V T + N PN  +  GD+A + 
Sbjct: 77  FTSVDLFAGAGGTALGLENA----GFRHVLLSELDKDAVATLRLNRPNWNVSAGDVASLD 132

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
            +      D++  GFPCQ FS AG
Sbjct: 133 FRAFAGKVDLVEGGFPCQAFSYAG 156


>gi|269976186|ref|ZP_06183182.1| modification methylase Eco47II [Mobiluncus mulieris 28-1]
 gi|269935515|gb|EEZ92053.1| modification methylase Eco47II [Mobiluncus mulieris 28-1]
          Length = 424

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               DLF G GG  L LE             SE++  +V T + N PN  +  GD+A + 
Sbjct: 77  FTSVDLFAGAGGTALGLENA----GFRHVLLSELDKDAVATLRLNRPNWNVSAGDVASLD 132

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
            +      D++  GFPCQ FS AG
Sbjct: 133 FRAFAGKVDLVEGGFPCQAFSYAG 156


>gi|227876656|ref|ZP_03994765.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842553|gb|EEJ52753.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 424

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               DLF G GG  L LE             SE++  +V T + N PN  +  GD+A + 
Sbjct: 77  FTSVDLFAGAGGTALGLENA----GFRHVLLSELDKDAVATLRLNRPNWNVSAGDVASLD 132

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
            +      D++  GFPCQ FS AG
Sbjct: 133 FRAFAGKVDLVEGGFPCQAFSYAG 156


>gi|328947595|ref|YP_004364932.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328447919|gb|AEB13635.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 476

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+   +E+      +    +SEI P + KT   N PN  + GDI     +DI
Sbjct: 78  LSFFSGAMGLDYGIEKA----GIHPLLASEIEPNARKTILLNRPNIGLIGDINNYSAKDI 133

Query: 65  PDH---------DVLLAGFPCQPFSQAG 83
                       D+++ G PCQ FS AG
Sbjct: 134 RKFANISEKQEIDLVIGGPPCQAFSTAG 161


>gi|315644199|ref|ZP_07897369.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
 gi|315280574|gb|EFU43863.1| DNA-cytosine methyltransferase [Paenibacillus vortex V453]
          Length = 485

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
             +  LF G GG+ +  E                           +       +++++  
Sbjct: 57  FNLVSLFSGCGGLDMGFELAGLAAVIGEEAAMEAFKDKDKFNEVRHKSIFHTIYTNDLFT 116

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + ++Y+ NFP +++    DI K+K  + P  DV++ GFPC  FS+AG
Sbjct: 117 EANESYKINFPQSVVQHRKDIRKVK--NFPKADVVVGGFPCPGFSEAG 162


>gi|307210936|gb|EFN87251.1| tRNA (cytosine-5-)-methyltransferase [Harpegnathos saltator]
          Length = 238

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ +L+ GIGG+   L ++      +   + +INP +   Y+ NFP T++   +I  I 
Sbjct: 1  MKVLELYSGIGGMHFALLESGIPA--KVVAAIDINPVANDVYRHNFPETVLMNRNIQSIS 58

Query: 61 TQDIPDHDV--LLAGFPCQPFSQAG 83
           Q +   DV  +L   PCQPF++ G
Sbjct: 59 AQTLNKLDVDAILMSPPCQPFTRLG 83


>gi|299469435|emb|CBH51836.1| putative DNA (cytosine-5-)-methyltransferase [Campylobacter fetus
           subsp. fetus]
          Length = 105

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 19/101 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTF----------------NHRNVECFFSSEINPYSVKTYQA 45
           ++I DLF GIGG  L  E                   N    +     EI+    K  + 
Sbjct: 4   MQILDLFSGIGGFSLGFESANFKDYDFLKLPTKQESVNDGFFKTTAFCEIDTNCHKVLKK 63

Query: 46  NFPNTLIFGDIAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
           ++ + +IF D+ KI   D+      D++  GFPCQ  S AG
Sbjct: 64  HWASAIIFNDVTKITKDDLAPLGKIDIITGGFPCQDLSIAG 104


>gi|50365124|ref|YP_053549.1| modification methylase Sau3AI (GATC cytosine-specific
          methyltransferase) [Mesoplasma florum L1]
 gi|50363680|gb|AAT75665.1| modification methylase Sau3AI (GATC cytosine-specific
          methyltransferase) [Mesoplasma florum L1]
          Length = 404

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-----YSVKTYQANFPNTLIFGDI 56
          +K+ +LF G+GG  L L+++    N E  FS++  P     ++      NF   ++  + 
Sbjct: 5  IKVVELFAGVGGFSLALKKSKG--NYEVIFSNQWEPSTKNQFAFNALNKNFKKHILSNED 62

Query: 57 AKIKTQDIP-DHDVLLAGFPCQPFSQA 82
           +   + +P D D+L+ GFPCQ +S A
Sbjct: 63 IQFAKEKLPNDFDLLVGGFPCQDYSVA 89


>gi|77409601|ref|ZP_00786278.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          COH1]
 gi|77171795|gb|EAO74987.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          COH1]
          Length = 333

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  +LF G GG+ L +E+       +     E +  + +T + N PN  +I  D+A I 
Sbjct: 1  MKSIELFAGAGGLALGIEKA----GFDTIGLVEFDSAASETLKYNRPNWNVIHDDVANIS 56

Query: 61 TQDIPDH--------DVLLAGFPCQPFSQAG 83
            D+ ++        D+L  G PCQ FS AG
Sbjct: 57 KLDLEEYFLIKKGELDLLSGGAPCQSFSYAG 87


>gi|15675067|ref|NP_269241.1| putative methyl transferase [Streptococcus pyogenes M1 GAS]
 gi|71910613|ref|YP_282163.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|306827418|ref|ZP_07460705.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
 gi|13622222|gb|AAK33962.1| putative methyl transferase [Streptococcus pyogenes M1 GAS]
 gi|71853395|gb|AAZ51418.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|304430565|gb|EFM33587.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pyogenes ATCC
          10782]
          Length = 107

 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 1  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 56

Query: 60 KTQDIP----DHDVLLAGF 74
            QD        D++  GF
Sbjct: 57 TDQDFRQLRGQVDIICGGF 75


>gi|328782909|ref|XP_393991.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Apis mellifera]
          Length = 360

 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M+++ +L+ GIGG+   L+++      +   + +IN  +   Y+ NFPN L+   +I  +
Sbjct: 1  MMRVLELYSGIGGMHYALQESGIK--GDIVAAVDINTVANSIYKYNFPNVLLLNCNIQSL 58

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
            Q+I   + D +L   PCQP+++ G
Sbjct: 59 SAQEINNLNIDTILMSPPCQPYTRIG 84


>gi|299142721|ref|ZP_07035850.1| C-5 cytosine-specific DNA methylase superfamily [Prevotella oris
          C735]
 gi|298575750|gb|EFI47627.1| C-5 cytosine-specific DNA methylase superfamily [Prevotella oris
          C735]
          Length = 398

 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG      E        +  F  EIN +        FPN++ + +I    
Sbjct: 4  IIRHASLFSGIG----APELAALWLGWQNVFHCEINEFCNTILNYWFPNSINYENIKTTN 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
                  D+L  GFPCQPFS AG
Sbjct: 60 FSQWQGKIDILTGGFPCQPFSSAG 83


>gi|312385012|gb|EFR29606.1| hypothetical protein AND_01274 [Anopheles darlingi]
          Length = 348

 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +LF GIGG+R+ LE+T      E   + ++NP +   Y  NF       G+I  + 
Sbjct: 13 LRVLELFSGIGGMRMALERTGRA--FEIVSAIDVNPIANSVYTHNFGEKAARNGNILSLT 70

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           + I     D +L   PCQPF++ G
Sbjct: 71 AKTISKLAIDTVLMSPPCQPFTRNG 95


>gi|309378924|emb|CBX22511.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 330

 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFGDIAKIK 60
          +K  DLF G GG+ L  EQ       E   + E  +  ++  Y+ NF + +   D+   +
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDK-AIDIYRKNFNHPVYETDLTDEQ 55

Query: 61 T--QDIPDH--DVLLAGFPCQPFSQAG 83
          T    I ++  D+++ G PCQ FS AG
Sbjct: 56 TAISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|283834737|ref|ZP_06354478.1| modification methylase HgiDII [Citrobacter youngae ATCC 29220]
 gi|291068977|gb|EFE07086.1| modification methylase HgiDII [Citrobacter youngae ATCC 29220]
          Length = 351

 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+ D FCG GG     E        +     + +  +  +Y+ANFPNT  I  DI  ++
Sbjct: 1  MKVIDFFCGCGGASKGFELA----GFDIALGIDFDKSAADSYKANFPNTAFINSDIRNVR 56

Query: 61 TQDIPDH-------DVL-LAGFPCQPFS 80
           +DI +        D++  A  PCQPFS
Sbjct: 57 VRDIAEIVPDWKENDLIFCACAPCQPFS 84


>gi|284051998|ref|ZP_06382208.1| cytosine-specific methyltransferase [Arthrospira platensis str.
          Paraca]
 gi|79835461|gb|ABB52090.1| Mod [Arthrospira platensis]
 gi|291568828|dbj|BAI91100.1| cytosine-specific methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 411

 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 15/90 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
           DLF G GG+ L LE        +   + E +      +  NFP    I GDI+++K+ +
Sbjct: 8  IDLFAGCGGMSLGLEAA----GFDVAVAVEFDAVHCLVHHFNFPYCHTICGDISQVKSAE 63

Query: 64 IPD----------HDVLLAGFPCQPFSQAG 83
          I D           D++  G PCQ FS  G
Sbjct: 64 ILDQLQLKYGHTEVDLIAGGPPCQGFSHIG 93


>gi|79835453|gb|ABB52085.1| Mod [Arthrospira platensis]
 gi|291569776|dbj|BAI92048.1| type II DNA modification methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 429

 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 2   LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
           +K  + D F G GG  L  +    H       + EI+ ++ +T+Q N PN  LI GDI  
Sbjct: 38  MKYSVLDTFAGAGGFSLGFQWAGAH----IIGAIEIDEWAGETFQFNHPNAHLIKGDIKG 93

Query: 59  IKTQDIPDH------DVLLAGFPCQPFSQA 82
           I  + I D        ++L G PCQ FS  
Sbjct: 94  ITDEQILDTFGEIKPHIILGGIPCQGFSIC 123


>gi|261401478|ref|ZP_05987603.1| modification methylase HindV [Neisseria lactamica ATCC 23970]
 gi|269208450|gb|EEZ74905.1| modification methylase HindV [Neisseria lactamica ATCC 23970]
          Length = 330

 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFGDIAKIK 60
          +K  DLF G GG+ L  EQ       E   + E  +  ++  Y+ NF + +   D+   +
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDK-AIDIYRKNFNHPVYETDLTDEQ 55

Query: 61 T--QDIPDH--DVLLAGFPCQPFSQAG 83
          T    I ++  D+++ G PCQ FS AG
Sbjct: 56 TAISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|313669224|ref|YP_004049508.1| DNA modification methylase [Neisseria lactamica ST-640]
 gi|313006686|emb|CBN88152.1| putative DNA modification methylase [Neisseria lactamica 020-06]
          Length = 330

 Score = 90.2 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFGDIAKIK 60
          +K  DLF G GG+ L  EQ       E   + E  +  ++  Y+ NF + +   D+   +
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDK-AIDIYRKNFNHPVYETDLTDEQ 55

Query: 61 T--QDIPDH--DVLLAGFPCQPFSQAG 83
          T    I ++  D+++ G PCQ FS AG
Sbjct: 56 TAISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|29566860|ref|NP_818425.1| gp127 [Mycobacterium phage Omega]
 gi|29425585|gb|AAN12767.1| gp127 [Mycobacterium phage Omega]
          Length = 247

 Score = 90.2 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLF GIGG  L L++       +   + EI+    +    ++P+ + F DI  +  
Sbjct: 3  LTHVDLFAGIGGFSLTLQRA----GAKTVANVEIDKNCRQILARHYPDAVQFDDIKNVSG 58

Query: 62 QDI------PDHDVLLAGFPCQPFS 80
           D+      P+  +L  GFPCQ  S
Sbjct: 59 DDLRSVGFVPERGILTGGFPCQDIS 83


>gi|167771959|ref|ZP_02444012.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
          17241]
 gi|167665757|gb|EDS09887.1| hypothetical protein ANACOL_03332 [Anaerotruncus colihominis DSM
          17241]
          Length = 520

 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF G GG  L          +   ++SE+  + ++  +  FP+    GDI +I  
Sbjct: 5  ITMGSLFDGSGGFPL----ASAIHGILPVWASEVEKFPIEVTKKRFPHMEHLGDITRIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ  S AG
Sbjct: 61 AKIRPVDIITFGSPCQDLSVAG 82


>gi|119873163|ref|YP_931170.1| DNA-cytosine methyltransferase [Pyrobaculum islandicum DSM 4184]
 gi|119674571|gb|ABL88827.1| DNA-cytosine methyltransferase [Pyrobaculum islandicum DSM 4184]
          Length = 319

 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M  + D+F G GG  L   +       +   + EI+  + +TY AN  NT++   D+A +
Sbjct: 1  MYNVADIFSGAGGFGLGFRKA----GFKIKVAVEIDRDAARTYSANHQNTVVLQEDVANV 56

Query: 60 KTQDI----PDHDVLLAGFPCQPFSQA 82
            +D+     +  +++   PC+PF+ A
Sbjct: 57 DYKDLVKYGGEIKIIIGSPPCEPFTAA 83


>gi|282880843|ref|ZP_06289537.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281305284|gb|EFA97350.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 374

 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           + + D+F G+GG+ +  E+           ++EI+    ++Y+ N  +T+ +  DI    
Sbjct: 1   MNVVDIFSGVGGLSVGFEKA----GFNVVLANEIDEQIAQSYKRNHTHTIMVNEDIRSFV 56

Query: 61  T----------------------QDIPDHDVLLAGFPCQPFSQAG 83
                                  Q++ D +V++ G PCQ FS AG
Sbjct: 57  DHFDDSISKATERLNSNCKEKLYQELNDINVVIGGPPCQGFSMAG 101


>gi|242024278|ref|XP_002432555.1| Modification methylase HaeIII, putative [Pediculus humanus
          corporis]
 gi|212518015|gb|EEB19817.1| Modification methylase HaeIII, putative [Pediculus humanus
          corporis]
          Length = 267

 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          + + +L+ GIGG+   L+++    + +   + +IN  + + Y+ NFP TL+ G +I  ++
Sbjct: 1  MNVIELYSGIGGMHFALKESG--IDYKVVKAVDINTTANEVYKLNFPKTLLLGKNIQSLQ 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D    D++L   PCQP ++ G
Sbjct: 59 LEDFNGIDMILMSPPCQPHTRNG 81


>gi|261393337|emb|CAX50970.1| putative type II restriction-modification system enzyme Mod
          [Neisseria meningitidis 8013]
          Length = 330

 Score = 90.2 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFGDIAKIK 60
          +K  DLF G GG+ L  EQ       E   + E  +  ++  Y+ NF + +   D+   +
Sbjct: 1  MKCIDLFAGCGGLSLGFEQA----GFEVCAAFEKWDK-AIDIYRKNFNHPVYETDLTDEQ 55

Query: 61 T--QDIPDH--DVLLAGFPCQPFSQAG 83
          T    I ++  D+++ G PCQ FS AG
Sbjct: 56 TAISQISNYQPDLIMGGPPCQDFSSAG 82


>gi|291618717|ref|YP_003521459.1| HsdRM [Pantoea ananatis LMG 20103]
 gi|291153747|gb|ADD78331.1| HsdRM [Pantoea ananatis LMG 20103]
          Length = 313

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M  +  LF G GG    +             +++I PY+   Y AN P T  + G +  I
Sbjct: 1  MPTVVSLFSGCGGSDAGVVNA----GFNVLMANDILPYARDVYLANHPETDYVLGSVDNI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K    P  D+L+  +PCQ FSQ G
Sbjct: 57 K--HFPKADLLVGCYPCQGFSQGG 78


>gi|228964036|ref|ZP_04125166.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795688|gb|EEM43165.1| hypothetical protein bthur0004_8960 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 478

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK- 58
           K+ DLF G GG      Q  +     +   S +I+  + KT   +     ++ GDI   
Sbjct: 4  YKVLDLFAGGGGFSTGFLQAKYQENEFDISKSLDIDKEACKTLSNHLSEKRVVNGDITDN 63

Query: 59 -IKTQDI---PDHDVLLAGFPCQPFSQAG 83
           IK Q      D DV++ G PCQ FS AG
Sbjct: 64 RIKEQIFLECEDVDVIIGGPPCQTFSLAG 92


>gi|327311917|ref|YP_004338814.1| DNA-cytosine methyltransferase [Thermoproteus uzoniensis 768-20]
 gi|326948396|gb|AEA13502.1| DNA-cytosine methyltransferase [Thermoproteus uzoniensis 768-20]
          Length = 312

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M  + DLF G GG                    EI+  + +TY  NFP   ++  D+A I
Sbjct: 1  MYNVVDLFAGGGGFSRGFADA----GFRVVLGVEIDANAARTYSYNFPRAVVLEEDVASI 56

Query: 60 KTQDIPDH----DVLLAGFPCQPFS 80
            +++  H    DV++ G PC+PF+
Sbjct: 57 SYREVERHVGKVDVVIGGSPCEPFT 81


>gi|317500279|ref|ZP_07958506.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087487|ref|ZP_08336423.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898322|gb|EFV20366.1| cytosine-specific methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330410467|gb|EGG89898.1| hypothetical protein HMPREF1025_00006 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 410

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+       E     E +  + ++ + N PN  +I  DIA I 
Sbjct: 77  FTTIELFAGAGGLALGIEKA----GFEPLGLIEFDKDAAESLKTNRPNWRVIHDDIANIS 132

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ D+        D+L  G PCQ FS AG
Sbjct: 133 CLDLEDYFGIKKGELDLLSGGAPCQAFSYAG 163


>gi|238922582|ref|YP_002936095.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
          33656]
 gi|238874254|gb|ACR73961.1| cytosine-specific methyltransferase [Eubacterium rectale ATCC
          33656]
          Length = 443

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 16/95 (16%)

Query: 1  ML-KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--YQANF----PNTLIF 53
          ML KI DLF G GG+ L  E+       +     E+ P + KT  Y  ++      T I 
Sbjct: 1  MLPKIIDLFSGCGGLALGFEKA----GFDIVAGIELMPEACKTISYNLSWRYGKKETHIC 56

Query: 54 GDIAKIKTQDIPDH--D---VLLAGFPCQPFSQAG 83
          GDI +I+     +   D   +++ G PCQ +S AG
Sbjct: 57 GDITEIEASVFKNSFGDEGCIVIGGPPCQAYSMAG 91


>gi|88854619|ref|ZP_01129286.1| C-5 cytosine-specific DNA methylase family protein [marine
          actinobacterium PHSC20C1]
 gi|88816427|gb|EAR26282.1| C-5 cytosine-specific DNA methylase family protein [marine
          actinobacterium PHSC20C1]
          Length = 352

 Score = 90.2 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAK-IKT 61
          + DLF G GG+    ++       E   + E +  +  +Y+A F P+ +  G I   +++
Sbjct: 1  MIDLFAGAGGLTAGFKKA--SARYETVRAVEWDTAAAASYEATFGPDIVYSGSIQDWLES 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          + +P  D+++ G PCQ FS  G
Sbjct: 59 EKVPRADLIVGGPPCQGFSTLG 80


>gi|225019628|ref|ZP_03708820.1| hypothetical protein CLOSTMETH_03581 [Clostridium methylpentosum
          DSM 5476]
 gi|224947595|gb|EEG28804.1| hypothetical protein CLOSTMETH_03581 [Clostridium methylpentosum
          DSM 5476]
          Length = 390

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M KI DLF G GG+ +  +            + E    +   Y+ NF + +   D++ ++
Sbjct: 1  MKKIVDLFAGCGGLSMGFQDA----GFNIVGAFEFWDIAADCYEKNFEHPVYRMDLSDVE 56

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
                 +   ++++ G PCQ FS AG
Sbjct: 57 KSVEKIKLLKPEIIIGGPPCQDFSHAG 83


>gi|260910178|ref|ZP_05916855.1| site-specific DNA-methyltransferase [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260635682|gb|EEX53695.1| site-specific DNA-methyltransferase [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 403

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF GIG      E           F  EIN +     +  +PN++ + DI     
Sbjct: 6  ITHASLFSGIG----APELAATWMGWRNLFHCEINDFCRTILRYWYPNSVSYEDIKTTNF 61

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
          ++     DVL  GFPCQPFS AG
Sbjct: 62 EEWRGRVDVLTGGFPCQPFSAAG 84


>gi|12229856|sp|P94147|MTA1_RUEGE RecName: Full=Modification methylase AgeI; Short=M.AgeI; AltName:
          Full=Cytosine-specific methyltransferase AgeI
 gi|8037880|gb|AAF71525.1|AF247972_2 AgeI methylase [Thalassobius gelatinovorus]
 gi|1695647|dbj|BAA11333.1| ageI metylase [Thalassobius gelatinovorus]
 gi|1588637|prf||2209243A AgeI methylase
          Length = 429

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          +K  DLFCG GG+     Q          ++++    ++ TY+ N P+ +   D I  + 
Sbjct: 1  MKTIDLFCGAGGLGEGFRQA----GFSALYANDHETPALATYKENHPDAVCSTDSIETVD 56

Query: 61 TQDIPD--------HDVLLAGFPCQPFSQAG 83
           + I +         DV++ G PCQ FS  G
Sbjct: 57 PKKIREDLGVAPGQVDVVMGGPPCQGFSTYG 87


>gi|325288246|ref|YP_004264427.1| C-5 cytosine-specific DNA methylase [Syntrophobotulus glycolicus
          DSM 8271]
 gi|324963647|gb|ADY54426.1| C-5 cytosine-specific DNA methylase [Syntrophobotulus glycolicus
          DSM 8271]
          Length = 90

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+ +  LF GIGG  L       H  +   ++SEI  + ++  +  FP  L  GDI K+ 
Sbjct: 1  MMTMGSLFDGIGGFPL----VAVHNGITPLWASEIEAFPIEVTKIRFPEMLHVGDITKLD 56

Query: 61 TQDIPDHDVLLAGFPCQPF 79
             +P  DV+  G PCQ +
Sbjct: 57 GAALPLVDVICGGSPCQDY 75


>gi|86159861|ref|YP_466646.1| DNA-cytosine methyltransferase [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85776372|gb|ABC83209.1| DNA-cytosine methyltransferase [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 380

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +  LF GIGG+ L + ++ +H  + C    E +  +     A FP     GDI  + 
Sbjct: 1  MLSVAGLFAGIGGLELGMARSGHHTKLLC----ENDACARAVLDARFPEVPKHGDIRTL- 55

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
           + +P D  ++ AGFPCQ  SQAG
Sbjct: 56 -ERLPKDTSLVTAGFPCQDLSQAG 78


>gi|332158207|ref|YP_004423486.1| modification methylase [Pyrococcus sp. NA2]
 gi|331033670|gb|AEC51482.1| modification methylase [Pyrococcus sp. NA2]
          Length = 310

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLF G GG  L  +        +   + E      KTY  NFP   +I  DI  +   
Sbjct: 12 VIDLFAGAGGFSLGFKLA----GFKIISAIENFKPKAKTYSQNFPEVNVIVSDIKLVNPL 67

Query: 63 DIPD-HDVLLAGFPCQPFS 80
          D+ D  DV++ G PC+PF+
Sbjct: 68 DVADKVDVIIGGPPCEPFT 86


>gi|154486241|ref|ZP_02027648.1| hypothetical protein BIFADO_00044 [Bifidobacterium adolescentis
          L2-32]
 gi|154084104|gb|EDN83149.1| hypothetical protein BIFADO_00044 [Bifidobacterium adolescentis
          L2-32]
          Length = 213

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GI          +     E    +EI P+     + ++PN    GD+ K+  
Sbjct: 1  MKYISLFSGI----EAATVAWQTLGWEPVAYAEIEPFPKAVLKHHYPNVPDLGDMTKVNW 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
          ++     DV++ G PCQ FS AG
Sbjct: 57 KEYHHAADVVVGGSPCQAFSIAG 79


>gi|325268581|ref|ZP_08135211.1| prophage LambdaBa01 protein [Prevotella multiformis DSM 16608]
 gi|324989109|gb|EGC21062.1| prophage LambdaBa01 protein [Prevotella multiformis DSM 16608]
          Length = 444

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG      E        +  F  EIN +        FPN++ + +I    
Sbjct: 4  IIRHASLFSGIG----APELAALWLGWQNVFHCEINEFCNTILNYWFPNSINYENIKTTD 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
                  D+L  GFPCQPFS AG
Sbjct: 60 FSRWQGQIDILTGGFPCQPFSSAG 83


>gi|241204300|ref|YP_002975396.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858190|gb|ACS55857.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 662

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + +L  G GG+ L LE              E + ++  T + N P   ++ GDI ++ 
Sbjct: 296 LNVIELCAGAGGMSLGLEDA----GFHPLALFEFDKHAAATLRLNRPLWNVVEGDIRQVD 351

Query: 61  TQDIPD--HDVLLAGFPCQPFSQAG 83
                    D+L+ G PCQPFS  G
Sbjct: 352 FTPYRSAGVDLLVGGLPCQPFSIDG 376


>gi|256397638|ref|YP_003119202.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM
          44928]
 gi|256363864|gb|ACU77361.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM
          44928]
          Length = 389

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          LK+ DLFCG GG     E+T +    E  +  +I P SV T+Q N    L   GDI K++
Sbjct: 4  LKVMDLFCGTGGFSKGFEKTGS---FEVVYGIDILPLSVATFQLNHEAALALSGDIRKVR 60

Query: 61 TQDIP--------DHDVLLAGFPCQPFS 80
            +I         + DV++ G PCQ FS
Sbjct: 61 RSEIAEKLNLARDEVDVIIGGPPCQGFS 88


>gi|321476287|gb|EFX87248.1| hypothetical protein DAPPUDRAFT_187425 [Daphnia pulex]
          Length = 341

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          ++I +L+ GIGG+    E    +   E  FS +IN  +   Y+ NF  T     +I  + 
Sbjct: 6  MRILELYSGIGGMHYAAELA--NVGAEVVFSVDINTSANAVYRHNFKQTNQQARNIESLS 63

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
           ++I     D+++   PCQPF++ G
Sbjct: 64 AKEINKLRPDIIMMSPPCQPFTRVG 88


>gi|313667096|gb|ADR72993.1| M1.BspMI [Bacillus sp. M(2010)]
          Length = 348

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          + DLF G GG+ +  E+       E     + +    KT++ NFPN      DI ++ + 
Sbjct: 5  VVDLFSGAGGLHIGFEKA----GFEIGLCIDNDINVEKTHKYNFPNIPFMNVDIKELSSD 60

Query: 63 DI------PDHDVLLAGFPCQPFSQAG 83
           +       + DVL+ G PCQ FS  G
Sbjct: 61 QVRNIIGNREVDVLIGGPPCQGFSTIG 87


>gi|291165856|gb|EFE27903.1| modification methylase EcoRII [Filifactor alocis ATCC 35896]
          Length = 375

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 13/89 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +    DL  GIGGIR   E T + +N     ++EI+ Y+  TYQ  +           + 
Sbjct: 2  LFTTIDLCAGIGGIRKGFELTGHFKN---LVAAEIDRYACLTYQHLYGEDADN----DLT 54

Query: 61 TQDIP------DHDVLLAGFPCQPFSQAG 83
          +++         +DVLLAGFPCQ FS+AG
Sbjct: 55 SEEFKTALEGLHYDVLLAGFPCQTFSRAG 83


>gi|302383143|ref|YP_003818966.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
          15264]
 gi|302193771|gb|ADL01343.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
          15264]
          Length = 377

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  +LF G GG+ + + +       E     E + ++ +T   N P  +  GD+ +   
Sbjct: 1  MRSVELFAGAGGLGIGVARA----GFEPAAVVEWDRWACETLLENKPWPVHRGDVREFSY 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            + + +++  G PCQPFS  G
Sbjct: 57 DHLANIELVSGGPPCQPFSMGG 78


>gi|288929280|ref|ZP_06423125.1| modification methylase HphIA (Cytosine-specific methyltransferase
          HphIA) [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329382|gb|EFC67968.1| modification methylase HphIA (Cytosine-specific methyltransferase
          HphIA) [Prevotella sp. oral taxon 317 str. F0108]
          Length = 370

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          + DLF G GG  +  E+           + EI+     TY  N  N L+   DI  +  +
Sbjct: 6  VIDLFAGCGGFSIGFEKA----GFHVTKAVEIDKQIAHTYSMNHANVLMLNDDIGSVDNE 61

Query: 63 ---DIPDHDVLLAGFPCQPFSQAG 83
                + +V++ G PCQ FS AG
Sbjct: 62 YNFTRGEAEVIVGGPPCQGFSMAG 85


>gi|307565390|ref|ZP_07627879.1| C-5 cytosine-specific DNA methylase [Prevotella amnii CRIS 21A-A]
 gi|307345840|gb|EFN91188.1| C-5 cytosine-specific DNA methylase [Prevotella amnii CRIS 21A-A]
          Length = 492

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG      E        +  F  EIN +        FPN++ + +I    
Sbjct: 4  IIRHASLFSGIG----APELAALWLGWQNVFHCEINEFCNTILSYWFPNSINYENIKTTD 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
                  D+L  GFPCQPFS AG
Sbjct: 60 FSKWQGQIDILTGGFPCQPFSSAG 83


>gi|119483468|ref|ZP_01618882.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119458235|gb|EAW39357.1| site-specific DNA-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 407

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           K+ D+F G GG  L  +              EI+ ++ +T   N P T ++  DI  I 
Sbjct: 5  FKVLDIFAGAGGFSLGFKMA----GGTLVGGIEIDQWAGETLAYNHPETQIVIRDIQTIS 60

Query: 61 TQD------IPDHDVLLAGFPCQPFSQA 82
           ++          +V++ G PCQ FS  
Sbjct: 61 DEEAISLFKYNKPNVIIGGPPCQGFSVC 88


>gi|148252729|ref|YP_001237314.1| putative 5-methylcytosine methyltransferase [Bradyrhizobium sp.
           BTAi1]
 gi|146404902|gb|ABQ33408.1| putative 5-methylcytosine methyltransferase [Bradyrhizobium sp.
           BTAi1]
          Length = 381

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIAKI 59
           DLF G GG  L          +    + E + Y+ +TY+AN  +       L   DI+K+
Sbjct: 26  DLFAGAGGFSLGAHLA----GINVAAAIEWDKYACQTYRANLIDTGLASTHLFEEDISKL 81

Query: 60  KTQDI--------PDHDVLLAGFPCQPFS 80
               +           D+LL G PCQ FS
Sbjct: 82  APNRVKLVAGFHERPCDILLGGPPCQGFS 110


>gi|108805045|ref|YP_644982.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766288|gb|ABG05170.1| DNA (cytosine-5-)-methyltransferase [Rubrobacter xylanophilus DSM
           9941]
          Length = 405

 Score = 89.8 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
             DLF G GG+ L  +        +   +++++  ++ TY+ N  + ++ GDI +    D
Sbjct: 152 FADLFSGAGGLSLGFQWA----GWQPVVANDVDEAALLTYRDNIHDVIVLGDIREHHVID 207

Query: 64  --IPDHD-----------VLLAGFPCQPFSQAG 83
             I   +            +L G PCQ FS AG
Sbjct: 208 AIIQKCEEARDASPNMPFFVLGGPPCQGFSTAG 240


>gi|293369629|ref|ZP_06616207.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
 gi|292635333|gb|EFF53847.1| DNA (cytosine-5-)-methyltransferase [Bacteroides ovatus SD CMC
          3f]
          Length = 296

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + +LF GIGG    LE        +  + SEI+ +++  ++ NFP     G +  I  
Sbjct: 1  MVLLELFSGIGGFSKGLEAAG--YTFDKVYFSEIDKHAIANFKYNFPYAEHIGTVTNIGE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I    ++  G PCQ FS  G
Sbjct: 59 VGIERPHIVTFGSPCQNFSAIG 80


>gi|291460136|ref|ZP_06599526.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417477|gb|EFE91196.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 319

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    LF GIGG+ L  E       ++     E+  Y     + ++P+   + DI  +  
Sbjct: 1  MNHLSLFSGIGGLDLAAEWA----GIKTVGQCELADYPYSVLEKHWPDVPKWRDIRDLTK 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +           D++  GFPCQPFS AG
Sbjct: 57 ESFYERTGLRTVDIISGGFPCQPFSFAG 84


>gi|126657178|ref|ZP_01728344.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
 gi|126621449|gb|EAZ92160.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. CCY0110]
          Length = 433

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G+GG+ L  EQ       +   S EI+P     +  NFP  T I   + KI    
Sbjct: 9  VDLFAGVGGMTLGFEQA----GFDVLASVEIDPIHCSIHHYNFPFWTTICTSVTKITANQ 64

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          I +         DV+  G PCQ FS  G
Sbjct: 65 IRELSKIKNKPIDVVFGGPPCQGFSLMG 92


>gi|322796386|gb|EFZ18927.1| hypothetical protein SINV_80475 [Solenopsis invicta]
          Length = 354

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ++++ +L+ GIGG+   L ++      +   + +INP +   Y  NFP T LI  +I  I
Sbjct: 8  IMRVMELYSGIGGMHYALCESGIAA--KVVTAIDINPIANDVYHHNFPETVLINRNIQSI 65

Query: 60 KTQDIPD--HDVLLAGFPCQPFSQAG 83
            Q++     D++L   PCQPF++ G
Sbjct: 66 NAQELNKLNIDIILMSPPCQPFTRLG 91


>gi|23465149|ref|NP_695752.1| modification methylase Sau3AI [Bifidobacterium longum NCC2705]
 gi|189440221|ref|YP_001955302.1| site-specific DNA methylase [Bifidobacterium longum DJO10A]
 gi|23325769|gb|AAN24388.1| modification methylase Sau3AI [Bifidobacterium longum NCC2705]
 gi|189428656|gb|ACD98804.1| Site-specific DNA methylase [Bifidobacterium longum DJO10A]
          Length = 423

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDL---------EQTFNHRN-VECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L         E         +  ++++  P       ++ + Y+
Sbjct: 3   IRIAELFAGVGGFRLGLDGYHDAAHPEFDMKPAGDFKTVWANQWEPNGQESKQFAWRCYE 62

Query: 45  ANFPN-TLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA +  +       IP+ D+L+ GFPCQ +S A
Sbjct: 63  KRFGEGSCVNEDIAVVLQEVKDGKRSIPEFDMLVGGFPCQDYSVA 107


>gi|330998524|ref|ZP_08322345.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
 gi|329568255|gb|EGG50071.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
          Length = 379

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M+   ++F G GG+   +E              E N  + KT + N+ P+ +   DI   
Sbjct: 1  MINSLEIFSGAGGLAKGIEMAGARHQ----AFVEWNGDACKTLRWNYSPDIVFETDIRDF 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          +     + DV+  G PCQPFS  G
Sbjct: 57 QFSQFSNIDVIAGGPPCQPFSLGG 80


>gi|227547415|ref|ZP_03977464.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212062|gb|EEI79958.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 433

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDL---------EQTFNHRN-VECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L         E         +  ++++  P       ++ + Y+
Sbjct: 13  IRIAELFAGVGGFRLGLDGYHDAAHPEFDMKPAGDFKTVWANQWEPNGQESKQFAWRCYE 72

Query: 45  ANFPN-TLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA +  +       IP+ D+L+ GFPCQ +S A
Sbjct: 73  KRFGEGSCVNEDIAVVLQEVKDGKRSIPEFDMLVGGFPCQDYSVA 117


>gi|20068992|gb|AAM09644.1|AF458984_2 m6 adenine and m5 cytosine DNA methyltransferase [Acinetobacter
           lwoffii]
          Length = 952

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKT 61
              DLF G GG+   + Q      ++  F+++    +  +++AN P T +I+GDI++  T
Sbjct: 728 TFGDLFAGAGGMSQGMFQA----GLKPIFANDCFLSACISHKANHPETDVIYGDISEAHT 783

Query: 62  QDI-----PDHDVLLAGFPCQPFSQAG 83
           +          D+L  G PCQ FSQAG
Sbjct: 784 KQKIYQYANKIDILCGGPPCQGFSQAG 810


>gi|53712640|ref|YP_098632.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Bacteroides fragilis YCH46]
 gi|52215505|dbj|BAD48098.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Bacteroides fragilis YCH46]
          Length = 296

 Score = 89.4 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + +LF GIGG    LE        +  + SEI+ +++  ++ NFP     G +  I  
Sbjct: 1  MVLLELFSGIGGFSKGLEAAG--YTFDKVYFSEIDKHAIANFKYNFPYAEHIGTVTNIGE 58

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I    ++  G PCQ FS  G
Sbjct: 59 VGIERPHIVTFGSPCQNFSAIG 80


>gi|316934943|ref|YP_004109925.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315602657|gb|ADU45192.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 495

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 23/100 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---------TLIF 53
           ++ DLF G GG+ L           E   S EI+  + +++  NF             + 
Sbjct: 23  RVLDLFSGCGGLSLGFHSA----GYEIAASVEIDELAARSHAINFYKGQAPELIERQAVA 78

Query: 54  GDIAKIKTQDIPD----------HDVLLAGFPCQPFSQAG 83
            DI KI   D+             D+++ G PCQ +++ G
Sbjct: 79  RDITKIDPDDLTSDLGLGPSKLAFDLIVGGPPCQAYARVG 118


>gi|18202059|sp|O52702|MTA1_ACEPA RecName: Full=Modification methylase ApaLI; Short=M.ApaLI;
          AltName: Full=Cytosine-specific methyltransferase ApaLI
 gi|2865599|gb|AAC97180.1| ApaLI methyltransferase [Acetobacter pasteurianus]
          Length = 429

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG      Q      ++  F +EIN  + +TYQ N  +     D++ +    
Sbjct: 7  VVSLFAGAGGFSSGFSQA----GLKPLFGAEINADACQTYQENVGSPCHQLDLSTVDPSH 62

Query: 64 IPDHD------VLLAGFPCQPFSQAG 83
          I          V++ G PCQ FS AG
Sbjct: 63 IEMLTGGKRPFVVIGGPPCQGFSTAG 88


>gi|282860047|ref|ZP_06269129.1| C-5 cytosine-specific DNA methylase [Prevotella bivia JCVIHMP010]
 gi|282587175|gb|EFB92398.1| C-5 cytosine-specific DNA methylase [Prevotella bivia JCVIHMP010]
          Length = 526

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++   LF GIG      E        +  F  EIN +        FPN++ + +I    
Sbjct: 4  IIRHASLFSGIG----APELAALWLGWQNVFHCEINEFCNTILSYWFPNSINYENIKTTD 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
                  D+L  GFPCQPFS AG
Sbjct: 60 FSKWQGQIDILTGGFPCQPFSSAG 83


>gi|289167785|ref|YP_003446054.1| site-specific DNA methylase [Streptococcus mitis B6]
 gi|288907352|emb|CBJ22189.1| site-specific DNA methylase [Streptococcus mitis B6]
          Length = 351

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            I DLF G GG+    E              + +  +++T+Q N  N  ++ GDIA I 
Sbjct: 4  YNIVDLFSGAGGLSYGFEMA----GFNVLLGIDNDEKALETFQKNHQNSEILCGDIANIS 59

Query: 61 -TQDIP------DHDVLLAGFPCQPFSQAG 83
            +DI         D+++ G PCQ  S +G
Sbjct: 60 YEEDIKPIIGEQKIDIIVGGPPCQGMSLSG 89


>gi|328766176|gb|EGF76234.1| hypothetical protein BATDEDRAFT_28720 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 373

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 27/107 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
           L +  LF G GG+ L LE                                   +S+++  
Sbjct: 14  LTVLGLFSGCGGLDLGLELAGLAAAIGEEKALEAFKNKEKFDAIRGESIFHTIYSNDLFK 73

Query: 38  YSVKTYQANFPNTLIFG-DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + ++Y+ NFP+T     DI KIK  + P+ D++L GFPC  FS+AG
Sbjct: 74  EANESYKLNFPSTFQHELDIRKIK--EFPNADLVLGGFPCPGFSEAG 118


>gi|228471867|ref|ZP_04056638.1| cytosine-specific methyltransferase NlaX [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276797|gb|EEK15500.1| cytosine-specific methyltransferase NlaX [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 186

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR---NVECFFSSEINPYSVKTYQANFPNT-----LIF 53
           L+I + F G GG    L +          E    SEI+ ++   +  N           +
Sbjct: 11  LRIFEGFAGYGGASFALRKLKEKYPQFKYEVVGYSEIDKFASSLFDVNHKGKQGNPIKNW 70

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI  I   ++PD D+   GFPCQPFS AG
Sbjct: 71  GDITLIDPYELPDFDMFTGGFPCQPFSSAG 100


>gi|1644234|dbj|BAA11339.1| ApaLI methylase [Acetobacter pasteurianus]
          Length = 429

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G GG      Q      ++  F +EIN  + +TYQ N  +     D++ +    
Sbjct: 7  VVSLFAGAGGFSSGFSQA----GLKPLFGAEINADACQTYQENVGSPCHQLDLSTVDPSH 62

Query: 64 IPDHD------VLLAGFPCQPFSQAG 83
          I          V++ G PCQ FS AG
Sbjct: 63 IEMLTGGKRPFVVIGGPPCQGFSTAG 88


>gi|46580156|ref|YP_010964.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46449573|gb|AAS96223.1| C-5 cytosine-specific DNA methylase family protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|311233853|gb|ADP86707.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 369

 Score = 89.4 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDI 56
          K  DLFCG GG  L       +  +E   + E N Y+  TY+ NF      P  L  GDI
Sbjct: 12 KAVDLFCGAGGFSL----AARNLGIEVVAALENNHYAAATYRHNFIEGSRRPPLLFEGDI 67

Query: 57 AKIKTQDI--------PDHDVLLAGFPCQPFS 80
            I  +             D+++ G PCQ FS
Sbjct: 68 LAISPEAFMQAANLTPGGVDIIMGGPPCQGFS 99


>gi|148988375|ref|ZP_01819822.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926056|gb|EDK77130.1| cytosine specific DNA methyltransferase [Streptococcus pneumoniae
          SP6-BS73]
          Length = 351

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            I DLF G GG+    E              + +  +++T+Q N  N  ++ GDIA I 
Sbjct: 4  YNIVDLFSGAGGLSYGFEMA----GFNVLLGIDNDEKALETFQKNHQNSEILCGDIANIS 59

Query: 61 -TQDIP------DHDVLLAGFPCQPFSQAG 83
            +DI         D+++ G PCQ  S +G
Sbjct: 60 YEEDIKPIIGEQKIDIIVGGPPCQGMSLSG 89


>gi|218134306|ref|ZP_03463110.1| hypothetical protein BACPEC_02199 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991681|gb|EEC57687.1| hypothetical protein BACPEC_02199 [Bacteroides pectinophilus ATCC
           43243]
          Length = 622

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA-- 57
           M +I DLF G GG+   +E+   + +     + + N  +++T++ N P+T  + GDI   
Sbjct: 269 MFRILDLFSGAGGMSYGMEK---NEHFTTEVALDFNEKALQTFKHNMPDTETVCGDITDE 325

Query: 58  KIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
           KIK + I        ++++ G PCQ FS  G
Sbjct: 326 KIKAKVIELCKAKKVNMIIGGPPCQGFSLKG 356


>gi|158339669|ref|YP_001520676.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
          MBIC11017]
 gi|158309910|gb|ABW31526.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
          MBIC11017]
          Length = 382

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKI- 59
          + D+FCG GG+ L  ++       +     + NP++VKT+  NFP     L   DI  I 
Sbjct: 1  MLDIFCGAGGMSLGFQKA----GCKILGGIDNNPHAVKTHHQNFPKCKLKLDATDIRDIE 56

Query: 60 KTQDI----PDHDVLLAGFPCQPFSQAG 83
            +D+     + D+L+ G PCQ FS+ G
Sbjct: 57 NLEDLGIDPKEVDILIGGPPCQVFSRVG 84


>gi|153814224|ref|ZP_01966892.1| hypothetical protein RUMTOR_00433 [Ruminococcus torques ATCC 27756]
 gi|145848620|gb|EDK25538.1| hypothetical protein RUMTOR_00433 [Ruminococcus torques ATCC 27756]
          Length = 702

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA-- 57
           M +I DLF G GG+   +E+   + +     + + N  +++T++ N P+T  + GDI   
Sbjct: 349 MFRILDLFSGAGGMSYGMEK---NEHFTTEVALDFNEKALQTFKHNMPDTETVCGDITDE 405

Query: 58  KIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
           KIK + I        ++++ G PCQ FS  G
Sbjct: 406 KIKAKVIELCKAKKVNMIIGGPPCQGFSLKG 436


>gi|254470861|ref|ZP_05084264.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
 gi|211960003|gb|EEA95200.1| DNA-cytosine methyltransferase [Pseudovibrio sp. JE062]
          Length = 498

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAK 58
           ++ DLF G GG+ L      + +  E   + E++P++ +++  NF           DI  
Sbjct: 19  RVLDLFAGCGGLSLGF----HSKGFEIAGAVELDPHAARSHGMNFHPGLETHAQPVDITS 74

Query: 59  IKTQDIPD----------HDVLLAGFPCQPFSQAG 83
           +  +++             D+++ G PCQ F++ G
Sbjct: 75  VGPEELAKKLSLGDTDHAIDIIIGGPPCQAFARVG 109


>gi|331003101|ref|ZP_08326612.1| hypothetical protein HMPREF0491_01474 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330412985|gb|EGG92361.1| hypothetical protein HMPREF0491_01474 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 356

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG    L++      ++   + EI+ ++ +TY+ N P  ++F  DI  I  ++
Sbjct: 7  VDLFSGAGGTTSGLKKA----GIKVAVAVEIDKWAAQTYRHNNPEVVLFEADIRDISGKE 62

Query: 64 IPDH------D--VLLAGFPCQPFSQAG 83
          I D+      D  +L+A  PCQ FS  G
Sbjct: 63 IIDNISLKSSDKLLLVACPPCQGFSTIG 90


>gi|209809294|ref|YP_002264832.1| putative C-5 cytosine-specific DNA methylase [Aliivibrio
          salmonicida LFI1238]
 gi|208010856|emb|CAQ81257.1| putative C-5 cytosine-specific DNA methylase [Aliivibrio
          salmonicida LFI1238]
          Length = 387

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 18/92 (19%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDI 56
          K  DLF G GG  L    + ++  VE   + E +  +  TY+ NF      P  L+  DI
Sbjct: 4  KAIDLFAGAGGFTL----SAHNAGVEVVAAIEFDKAAANTYKKNFILKDKKPIKLLNEDI 59

Query: 57 AKIKTQDIP--------DHDVLLAGFPCQPFS 80
            +    +         + D++L G PCQ FS
Sbjct: 60 NLVDPTGLRESLNLKAGELDLILGGPPCQGFS 91


>gi|77465763|ref|YP_355266.1| cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77390181|gb|ABA81365.1| Cytosine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 443

 Score = 89.0 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + EI+P     ++ NFP+T +    +  +  ++
Sbjct: 6  IDLFAGAGGLSLGFEQA----GFDVAAAVEIDPVHCAVHKFNFPDTAVIPRSVVGLTAEE 61

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          I +         D +  G PCQ FS  G
Sbjct: 62 IRESAGIGNRPIDCVFGGPPCQGFSLIG 89


>gi|58580230|ref|YP_199246.1| modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424824|gb|AAW73861.1| Modification methylase XorII [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 442

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
            DLF G GG+ L  EQ       +   + +I+P     ++ NFP    +   +  +   +
Sbjct: 25  IDLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTGDE 80

Query: 64  I--------PDHDVLLAGFPCQPFSQAG 83
           +         D D+++ G PCQ FS  G
Sbjct: 81  LRRIAGIGKRDIDIVIGGAPCQGFSLIG 108


>gi|206972356|ref|ZP_03233302.1| modification methylase [Bacillus cereus AH1134]
 gi|206732681|gb|EDZ49857.1| modification methylase [Bacillus cereus AH1134]
          Length = 309

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCG-IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +K+  LF G I G+ L  +     +  E   S+E+   +VKT + N+ +T+I  DI  + 
Sbjct: 4  IKVGSLFSGAIDGMSLGFQMC--SKQYEVIISNELEATAVKTAKLNYNHTIIQQDIRNVS 61

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           +   + DV+L  FPCQ +S+A
Sbjct: 62 VEAFRECDVILGTFPCQEYSKA 83


>gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus
           stearothermophilus]
          Length = 1068

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--IFGDIA--K 58
              DLF G GG+    E       +E   + EI+  + +TY  N  + +  I GDI   +
Sbjct: 793 TFVDLFAGAGGLSYGFELA----GLEGMAALEIDKDAAETYAKNHSSNIDVIVGDIRSPE 848

Query: 59  IKTQDIPDH---------DVLLAGFPCQPFSQAG 83
           I+ Q I            D++  G PCQ FS AG
Sbjct: 849 IQNQLIESVKNKLKGRTLDLIAGGLPCQGFSTAG 882


>gi|156936516|ref|YP_001440431.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534770|gb|ABU79595.1| hypothetical protein ESA_pESA2p06562 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 415

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L   DLF G GG+   L +          +++EI+P   +TY  N P T++   DI ++ 
Sbjct: 16  LTSLDLFAGAGGLSEGLREA----GFTSLYANEISPRYAQTYAVNHPGTIVESRDIREVD 71

Query: 61  TQDIP--------DHDVLLAGFPCQPFSQ 81
              I         + D++  G PCQ FS 
Sbjct: 72  AHKIRNLLGLKRGELDLIAGGPPCQGFSI 100


>gi|315656923|ref|ZP_07909810.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492878|gb|EFU82482.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 503

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          ++  ++SE++P++++  + N P     GDI  +  
Sbjct: 4  LTLGSLFDGSGGFPL----AAKMVGIKPMWASEVDPFAIRVTKKNLPEVRHVGDINLLDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 60 GRLQPVDVITFGSPCQDLSIAG 81


>gi|224418258|ref|ZP_03656264.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          canadensis MIT 98-5491]
 gi|253827583|ref|ZP_04870468.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313141791|ref|ZP_07803984.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
          MIT 98-5491]
 gi|253510989|gb|EES89648.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|313130822|gb|EFR48439.1| cytosine-specific DNA methyltransferase [Helicobacter canadensis
          MIT 98-5491]
          Length = 589

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
          M +I DLFCG GG    LEQ   ++N +     +    ++ T+  NF   + I GDI   
Sbjct: 1  MYRILDLFCGAGGFSYGLEQ---NKNFKTVIGLDFEKAAIDTFNHNFKQAIGICGDITNK 57

Query: 60 KTQDI-------PDHDVLLAGFPCQPFSQAG 83
          + +D           ++++ G PCQ FS  G
Sbjct: 58 EVKDKVVNLAKELKVNMVIGGPPCQGFSLKG 88


>gi|152994008|ref|YP_001359729.1| cytosine-specific methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425869|dbj|BAF73372.1| cytosine-specific methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 362

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
              D+F G GG+ +          +    + E + ++  TY+AN P+T +   DI  ++
Sbjct: 5  FTAVDIFSGAGGMSIGAVMA----GITPVLAVEFDEHAAATYKANHPHTNVLAKDIKGVE 60

Query: 61 T-QDIPDHDVLL-AGFPCQPFSQA 82
            + +  H  LL  G PCQ FS A
Sbjct: 61 PLKHVEKHPFLLFGGPPCQGFSVA 84


>gi|300866085|ref|ZP_07110814.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300335911|emb|CBN55972.1| site-specific DNA-methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 436

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           D F G GG+ L  EQ       +   S EI+P    T+  NFP  ++    I  I   +
Sbjct: 13 IDFFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHNFNFPFWSVFCQSIIDITGAE 68

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I         + DV+  G PCQ FS  G
Sbjct: 69 IRQKSAIGDREIDVVFGGPPCQGFSLIG 96


>gi|325270471|ref|ZP_08137073.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
 gi|324987194|gb|EGC19175.1| modification methylase DdeI [Prevotella multiformis DSM 16608]
          Length = 398

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
             + DLFCG GG+    E+       +     ++   ++ TYQ N     ++  D++ I 
Sbjct: 55  YNVLDLFCGCGGMSYGFEKA----GFDVLLGIDVWKDALVTYQHNHRSGGVLCADLSVIT 110

Query: 61  TQDIPDH------DVLLAGFPCQPFSQAG 83
            +++  H      DV++ G PCQ FS AG
Sbjct: 111 GKEVGQHLGGKQVDVIIGGPPCQGFSVAG 139


>gi|304311589|ref|YP_003811187.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
 gi|301797322|emb|CBL45542.1| C-5 cytosine-specific DNA methylase [gamma proteobacterium HdN1]
          Length = 387

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +K  ++F G GG+   LE +      +     E N ++  +   NF    + FGDI    
Sbjct: 1  MKSLEIFSGAGGLAKGLELS----GFKHAAFVEYNKHACASLSENFDRKKVFFGDIQDFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             + + DV+  G PCQPFS  G
Sbjct: 57 LTVLDNIDVVAGGPPCQPFSLGG 79


>gi|322382626|ref|ZP_08056496.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153407|gb|EFX45824.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 345

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF GIGGI L          +E     E   +  +  + ++P+  I+ D+  +  
Sbjct: 1  MRKLSLFSGIGGIDL----AAKWAGIETVAFCEKESFPQQVLRKHWPDIPIYDDVCALTR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          + +            D++ AG+PCQPFS AG
Sbjct: 57 EVLEQDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|167461751|ref|ZP_02326840.1| site-specific DNA-methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 350

 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF GIGGI L          +E     E   +  +  + ++P+  I+ D+  +  
Sbjct: 1  MRKLSLFSGIGGIDL----AAKWAGIETVAFCEKESFPQQVLRKHWPDIPIYDDVCALTR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          + +            D++ AG+PCQPFS AG
Sbjct: 57 EVLEQDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|320007884|gb|ADW02734.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
           33331]
          Length = 660

 Score = 88.7 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            DLF G GG+ L LE+           + + +  +++T+ ANFP   +  D+     +D 
Sbjct: 45  VDLFSGAGGLSLGLERA----GWTVAAAVDFDQRALRTHAANFPGMSLHMDLGNPDERDR 100

Query: 65  -------PDHDVLLAGFPCQPFSQAG 83
                     D++  G PCQPFS+AG
Sbjct: 101 LVEMLAPAKIDLVAGGPPCQPFSRAG 126


>gi|62297515|sp|P52311|MTX2_XANOR RecName: Full=Modification methylase XorII; Short=M.XorII;
          AltName: Full=Cytosine-specific methyltransferase XorII
          Length = 424

 Score = 88.7 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + +I+P     ++ NFP    +   +  +   +
Sbjct: 7  IDLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTGDE 62

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          +         D D+++ G PCQ FS  G
Sbjct: 63 LRRIAGIGKRDIDIVIGGAPCQGFSLIG 90


>gi|15801798|ref|NP_287816.1| putative DNA modification methyltransferase encoded within
          prophage CP-933R [Escherichia coli O157:H7 EDL933]
 gi|15831207|ref|NP_309980.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|217329077|ref|ZP_03445157.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          TW14588]
 gi|12515382|gb|AAG56430.1|AE005370_3 putative DNA modification methyltransferase encoded within
          prophage CP-933R [Escherichia coli O157:H7 str. EDL933]
 gi|13361418|dbj|BAB35376.1| putative methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|217317516|gb|EEC25944.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          TW14588]
 gi|323179669|gb|EFZ65230.1| modification methylase XorII [Escherichia coli 1180]
 gi|326343203|gb|EGD66970.1| DNA-cytosine methyltransferase [Escherichia coli O157:H7 str.
          1044]
          Length = 383

 Score = 88.7 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + + DLF G+GG+ L   +       +   + EI+ +++ T+  NFP +  +  D++ + 
Sbjct: 1  MNVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLN 56

Query: 61 TQDIPDH-------DVLLAGFPCQPFSQAG 83
           + I          D ++ G PCQ FS  G
Sbjct: 57 AEIIKGFFKNDMPIDGIIGGPPCQGFSSIG 86


>gi|261338523|ref|ZP_05966407.1| modification methylase Sau3AI [Bifidobacterium gallicum DSM 20093]
 gi|270276533|gb|EFA22387.1| modification methylase Sau3AI [Bifidobacterium gallicum DSM 20093]
          Length = 423

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 24/105 (22%)

Query: 2   LKITDLFCGIGGIRLDLE----------QTFNHRNVECFFSSEINP-------YSVKTYQ 44
           ++I +LF G+GG RL L+                +    ++++  P       ++ + Y+
Sbjct: 4   IRIAELFAGVGGFRLGLDGYDNPEHPDFHMEPAGDFRTVWANQWEPNGQDSKQFAWRCYE 63

Query: 45  ANFP-NTLIFGDIA----KIKT--QDIPDHDVLLAGFPCQPFSQA 82
             F   + +  DIA    ++    ++IP+ D+L+ GFPCQ +S A
Sbjct: 64  DRFGAGSCVNEDIAVVLDQVDAGEREIPEFDMLVGGFPCQDYSVA 108


>gi|312902257|ref|ZP_07761465.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|283466064|emb|CBG92839.1| hypothetical protein [Enterococcus casseliflavus]
 gi|310634316|gb|EFQ17599.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 470

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + + F G GG+ L LE+             EI+  +  T + N PN  +I GDI  I 
Sbjct: 135 YTLVETFAGAGGLSLGLEKA----GFNSVADIEIDSTACSTLKLNRPNWNVIEGDINTIA 190

Query: 61  TQDIPDH---------DVLLAGFPCQPFSQAG 83
              I +H         DVL  G+PCQ FS AG
Sbjct: 191 QNGIFNHEQFTFRGELDVLSGGYPCQSFSYAG 222


>gi|257867246|ref|ZP_05646899.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873580|ref|ZP_05653233.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801302|gb|EEV30232.1| DNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807744|gb|EEV36566.1| DNA methyltransferase [Enterococcus casseliflavus EC10]
          Length = 470

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
             + + F G GG+ L LE+             EI+  +  T + N PN  +I GDI  I 
Sbjct: 135 YTLVETFAGAGGLSLGLEKA----GFNSVADIEIDSTACSTLKLNRPNWNVIEGDINTIA 190

Query: 61  TQDIPDHD---------VLLAGFPCQPFSQAG 83
              I +HD         VL  G+PCQ FS AG
Sbjct: 191 QNGIFNHDQFTFRGELDVLSGGYPCQSFSYAG 222


>gi|167461724|ref|ZP_02326813.1| site-specific DNA-methyltransferase [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 345

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF GIGGI L          +E     E   +  +  + ++P+  I+ D+  +  
Sbjct: 1  MRKLSLFSGIGGIDL----AAKWTGIETVAFCEKESFPQQVLRKHWPDIPIYDDVCALTR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          + +            D++ AG+PCQPFS AG
Sbjct: 57 EVLEQDGIITRNRTIDLISAGYPCQPFSNAG 87


>gi|4033740|gb|AAC97192.1| modification methylase M.NspHI [Nostoc sp. ATCC 29106]
          Length = 397

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               DLFCG GGI   L Q       +   S E +  +  T+Q NFP+   F GDI +  
Sbjct: 60  YNFVDLFCGAGGITQGLIQA----GFQALASVETSSIASATHQRNFPHCHHFCGDIEQFS 115

Query: 61  TQDI------PDHDVLLAGFPCQPFSQAG 83
            +        P+ ++++ G PCQ FS AG
Sbjct: 116 PKIWLKQIGSPEVNLVVGGPPCQGFSVAG 144


>gi|119511191|ref|ZP_01630308.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
 gi|119464179|gb|EAW45099.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
          Length = 432

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---------NTLIFGD 55
           DLF G GG+ L  EQ       +   S EI+P    T++ NFP               +
Sbjct: 9  VDLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHEFNFPFWRVLCKPVEETTSQE 64

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I +  +    + DV+  G PCQ FS  G
Sbjct: 65 IRQSSSIGDREIDVVFGGPPCQGFSLIG 92


>gi|71903439|ref|YP_280242.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94988546|ref|YP_596647.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94992369|ref|YP_600468.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|71802534|gb|AAX71887.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94542054|gb|ABF32103.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545877|gb|ABF35924.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 110

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          ++  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MQFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGF 74
            QD        D++  GF
Sbjct: 60 TDQDFRQLRGQVDIICGGF 78


>gi|330835884|ref|YP_004410612.1| DNA-cytosine methyltransferase [Metallosphaera cuprina Ar-4]
 gi|329568023|gb|AEB96128.1| DNA-cytosine methyltransferase [Metallosphaera cuprina Ar-4]
          Length = 321

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K+ DLF G GG           +  E   + ++N  + +TY +NFP  T++  DI  +  
Sbjct: 5  KVVDLFSGAGGFAKGF----KLQGFEISLAIDLNHAAARTYSSNFPTATVLEEDIRNVTG 60

Query: 62 QDI-----PDHDVLLAGFPCQPFSQA 82
          +DI        DV++   PC+PF+ A
Sbjct: 61 KDIIGLIGSRPDVVIGSPPCEPFTGA 86


>gi|60202519|gb|AAX14651.1| BbvCI methyltransferase 2 [Brevibacillus brevis]
          Length = 396

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 2  LKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          +K    D+F G GG    L Q  +    E   + EI+ ++ +TYQ N  N  L+  DI K
Sbjct: 1  MKFVALDIFAGCGGFSSGLIQAGH----EVTSALEIDSWAAETYQFNHRNVNLLTEDITK 56

Query: 59 IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          + +           ++++ G PCQ FS +G
Sbjct: 57 VDSTYFKVNFKDRVNLVVGGPPCQGFSVSG 86


>gi|197106819|ref|YP_002132196.1| DNA-cytosine methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196480239|gb|ACG79767.1| DNA-cytosine methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 375

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
              + F G G  RL L          C F+++ +P    TY+ANFP+       GD+ K
Sbjct: 6  FSFYEFFAGGGMARLGL-----GARWACAFANDFDPVKAATYRANFPDAESHFREGDVWK 60

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +   D+P   D+  A  PCQ FS AG
Sbjct: 61 LGPVDLPGRADLAWASSPCQDFSLAG 86


>gi|153874403|ref|ZP_02002639.1| Modification methylase [Beggiatoa sp. PS]
 gi|152069134|gb|EDN67362.1| Modification methylase [Beggiatoa sp. PS]
          Length = 92

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI- 59
          M+K+ DLF GIGG+ L  +        +   + +    +++ YQANF +  +  D++++ 
Sbjct: 1  MMKVIDLFAGIGGLSLGFQNA----GFKIVAAIDNWQAAMENYQANFNHDALLIDLSQMS 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
            +   D+  D+++ G PCQ F   G
Sbjct: 57 DYKKFKDYQPDIIIGGPPCQDFPVPG 82


>gi|111656823|ref|ZP_01407675.1| hypothetical protein SpneT_02001911 [Streptococcus pneumoniae
          TIGR4]
 gi|148994722|ref|ZP_01823806.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP9-BS68]
 gi|148999034|ref|ZP_01826467.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP11-BS70]
 gi|307067986|ref|YP_003876952.1| site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|147755157|gb|EDK62211.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP11-BS70]
 gi|147927053|gb|EDK78094.1| type II DNA modification methyltransferase Spn5252IP
          [Streptococcus pneumoniae SP9-BS68]
 gi|306409523|gb|ADM84950.1| Site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|332074668|gb|EGI85142.1| modification methylase HpaII [Streptococcus pneumoniae GA17545]
 gi|332200781|gb|EGJ14853.1| modification methylase HpaII [Streptococcus pneumoniae GA41317]
 gi|332201799|gb|EGJ15869.1| modification methylase HpaII [Streptococcus pneumoniae GA47368]
          Length = 392

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 20 QTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDIPD----HDVLLAG 73
               +  EC    EI+ ++ K+Y++ F     + F DI  +   +        DV+  G
Sbjct: 1  MGMEAQGHECLGFCEIDKFARKSYKSIFQTEGEIEFHDIRDVSDDEFKKLRGKVDVICGG 60

Query: 74 FPCQPFSQAG 83
          FPCQ FS AG
Sbjct: 61 FPCQAFSIAG 70


>gi|326564851|gb|EGE15057.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 103P14B1]
          Length = 288

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           I  LF GIGG  +  E+          +  EINP         FP+   F D+     +
Sbjct: 15 TIGSLFAGIGGFDVGFEKA----GFHTSWQVEINPVCRAVLSDRFPHAKQFADVKTCLPE 70

Query: 63 --DIPD---HDVLLAGFPCQPFSQAG 83
             +P+    DV+  GFPCQ  S AG
Sbjct: 71 LLSLPNGGQVDVIAGGFPCQDVSVAG 96


>gi|116251696|ref|YP_767534.1| modification methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256344|emb|CAK07425.1| putative modification methylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 666

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + +L  G GGI L LE              E + ++V T + N P   ++ GDI ++ 
Sbjct: 293 LNVVELCAGAGGISLGLEDA----GYHPLALFEFDKHAVATLRLNRPLWNVVEGDIRQVD 348

Query: 61  TQDIPD--HDVLLAGFPCQPFSQAG 83
                    D+L+ G PCQ +S  G
Sbjct: 349 FTAYRSVGVDLLVGGPPCQGYSIDG 373


>gi|254465219|ref|ZP_05078630.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
 gi|206686127|gb|EDZ46609.1| modification methylase XorII [Rhodobacterales bacterium Y4I]
          Length = 437

 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + E++P     ++ NFP   +    +  +   D
Sbjct: 7  VDLFSGAGGMSLGFEQA----GFDIVAAVELDPVHAAVHKYNFPECAVIPNSVTDVSGAD 62

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          + +         DV+  G PCQ FS  G
Sbjct: 63 VREAAGIGNKTVDVVFGGAPCQGFSLIG 90


>gi|284050355|ref|ZP_06380565.1| site-specific DNA-methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 371

 Score = 88.3 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + D F G GG  L  +    H       + EI+ ++ +T+Q N PN  LI GDI  I  +
Sbjct: 1  MLDTFAGAGGFSLGFQWAGAH----IIGAIEIDEWAGETFQFNHPNAHLIKGDIKGITDE 56

Query: 63 DIPDH------DVLLAGFPCQPFSQA 82
           I D        ++L G PCQ FS  
Sbjct: 57 QILDTFGEIKPHIILGGIPCQGFSIC 82


>gi|317483873|ref|ZP_07942812.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316924890|gb|EFV46037.1| C-5 cytosine-specific DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 401

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTL 51
          +K  +LF G GG+ L +               E + ++  T + N          +P  L
Sbjct: 1  MKSVELFAGAGGLALGVSLAGFTSGAVI----EWDKWACDTIRENQQRQNPLVADWP--L 54

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D+       I   D+L  G PCQPFS  G
Sbjct: 55 HEQDVRLFDFSTIKGIDLLAGGPPCQPFSLGG 86


>gi|325857409|ref|ZP_08172464.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
          18C-A]
 gi|325483119|gb|EGC86099.1| DNA (cytosine-5-)-methyltransferase [Prevotella denticola CRIS
          18C-A]
          Length = 320

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 20/92 (21%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
          +K+ DLFCG GG+ L  +Q       +   + +    +   Y+ NF + +   D      
Sbjct: 1  MKVVDLFCGCGGLSLGFQQA----GFDIIAAYDNWEAATDVYRLNFSHPVHKADLMNAAR 56

Query: 56 ----IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              I +   +      +++ G PCQ +S AG
Sbjct: 57 ASESIMQYSPE------MIIGGPPCQDYSSAG 82


>gi|317401187|gb|EFV81833.1| hypothetical protein HMPREF0005_01193 [Achromobacter xylosoxidans
           C54]
          Length = 571

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           L   DLF G GG  L  E       + C  + + N  +++T++AN       +  D+ K 
Sbjct: 41  LTFLDLFSGCGGFSLGFEAA----GLVCKAAVDSNEAAIETFKANHTKGALGLVRDLTKF 96

Query: 60  KTQDIPD-------HDVLLAGFPCQPFSQA 82
             +D+          +V++ G PCQ FS+A
Sbjct: 97  SPKDLDKLLGGSVRINVIVGGPPCQGFSKA 126


>gi|296242618|ref|YP_003650105.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
 gi|296095202|gb|ADG91153.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
          Length = 461

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------------NTL 51
          +  LF G GG+ L    +      E   +++I  + VKTY  NF               +
Sbjct: 1  MLSLFSGAGGLDLGFVMSGR---FEILAANDIEEHMVKTYSINFGARIIPRLQPRLYPQV 57

Query: 52 IFGDIAKIKTQDIPD--HDVLLAGFPCQPFSQ 81
          I GD++K+    + D   +V++ G PCQ FS 
Sbjct: 58 ILGDVSKVDFSLLKDEGINVVVGGPPCQDFSI 89


>gi|307169339|gb|EFN62060.1| tRNA (cytosine-5-)-methyltransferase [Camponotus floridanus]
          Length = 362

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ +L+ GIGG+   L ++      +   + +INP +   Y+ NFP T++   +I  + 
Sbjct: 1  MKVLELYSGIGGMHYALRES--EITAKVVAAIDINPVANAVYRENFPETILMNRNIESLN 58

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           Q++     D +L   PCQPF++ G
Sbjct: 59 AQELNKLGLDAILMSPPCQPFTRLG 83


>gi|170680813|ref|YP_001746263.1| DNA-cytosine methyltransferase family protein [Escherichia coli
          SMS-3-5]
 gi|307315390|ref|ZP_07594959.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|33413740|gb|AAN28260.1| Mth [Enterobacteria phage WPhi]
 gi|170518531|gb|ACB16709.1| DNA-cytosine methyltransferase family protein [Escherichia coli
          SMS-3-5]
 gi|306905264|gb|EFN35809.1| DNA-cytosine methyltransferase [Escherichia coli W]
 gi|315063217|gb|ADT77544.1| DNA cytosine methylase [Escherichia coli W]
 gi|323380718|gb|ADX52986.1| DNA-cytosine methyltransferase [Escherichia coli KO11]
          Length = 312

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M  +  LF G GG    +             +++I PY+   Y  N P T  I GDI+ +
Sbjct: 1  MPTVVSLFSGCGGSDAGVLNA----GFNVLMANDILPYARDVYLENHPETDYILGDISGL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            Q  P  ++L+  +PCQ FSQ G
Sbjct: 57 --QSFPSAELLIGCYPCQGFSQGG 78


>gi|329890824|ref|ZP_08269167.1| cytosine-specific methyltransferase NlaX [Brevundimonas diminuta
          ATCC 11568]
 gi|328846125|gb|EGF95689.1| cytosine-specific methyltransferase NlaX [Brevundimonas diminuta
          ATCC 11568]
          Length = 395

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
          M    + F G G  R  L          C F+++ +     TYQAN+     L  GDI  
Sbjct: 1  MADFYEFFAGAGMARAGL-----GDGWTCQFANDFDGKKGLTYQANWGTGGELHVGDIRN 55

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          ++TQ +P + D++   FPCQ  S AG
Sbjct: 56 VETQQLPGEADLIWGSFPCQDLSLAG 81


>gi|23097628|ref|NP_691094.1| site-specific DNA-methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|22775851|dbj|BAC12129.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Oceanobacillus iheyensis HTE831]
          Length = 596

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            K+ DLF G GG+     QT      E   + EIN  + KTY  N               
Sbjct: 12  YKLIDLFAGAGGLSNGFIQTGK---FEVLGAVEINKSAAKTYVENHNKNEDLIIKSGNSG 68

Query: 54  -GDIAKIKTQDI-------PDHDVLLAGFPCQPFSQA 82
             D++KI   +         D  V++ G PCQ FS A
Sbjct: 69  MSDVSKIDFANFILEKKTSGDEIVVIGGPPCQGFSNA 105


>gi|290892537|ref|ZP_06555530.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
 gi|290557846|gb|EFD91367.1| site-specific DNA-methyltransferase BsuRI [Listeria monocytogenes
           FSL J2-071]
          Length = 409

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 29/108 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN-------------------------VECFFSSEINP 37
            +  LF G GG+ L LE    +                               +S+++  
Sbjct: 57  NVVSLFSGAGGLDLGLELAGVYAKKEQKEQPLELLNNYPRYKEIRKESLFNIIYSNDMFK 116

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY ANF + ++    DI KI   + P  ++++ GFPC  FS AG
Sbjct: 117 EANETYLANFQSNILKQELDIRKIP--NFPKCELMIGGFPCPGFSAAG 162


>gi|294668765|ref|ZP_06733858.1| modification methylase BsuRI [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309282|gb|EFE50525.1| modification methylase BsuRI [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 313

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M     LF G GG    + +      ++   +++I PY+   Y AN P T  I  D+ K+
Sbjct: 1  MATAVSLFSGCGGSDTGVHR----LGIDILMANDIIPYARDVYLANLPQTDYILKDVRKL 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            +  P  D+LL  +PCQ FSQ G
Sbjct: 57 --ESFPSADLLLGCYPCQGFSQGG 78


>gi|16272974|ref|NP_439200.1| modification methylase [Haemophilus influenzae Rd KW20]
 gi|1171050|sp|P45000|MTH5_HAEIN RecName: Full=Modification methylase HindV; Short=M.HindV;
          AltName: Full=Cytosine-specific methyltransferase HindV
 gi|1574073|gb|AAC22700.1| modification methylase [Haemophilus influenzae Rd KW20]
          Length = 304

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  E        E   + E    +++ Y+ NF + +   D+   K 
Sbjct: 1  MKCVDLFSGCGGLSLGFELA----GFEICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKE 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
            + I  +  D+++ G PCQ FS AG
Sbjct: 57 AVEKIKKYSPDLIMGGPPCQDFSSAG 82


>gi|458402|gb|AAA50432.1| M-XorII [Xanthomonas oryzae]
          Length = 424

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + +I+P     ++ NFP    +   +  +   +
Sbjct: 7  IDLFAGAGGLSLGFEQA----GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTRSE 62

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          +         D D+++ G PCQ FS  G
Sbjct: 63 LRRIAGIGKRDIDIVIGGAPCQGFSLIG 90


>gi|212633712|ref|YP_002310237.1| site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
 gi|212555196|gb|ACJ27650.1| Site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
          Length = 475

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G  G+ L +E++      +   + E++ Y  +T   N P+T +  DI K    ++
Sbjct: 76  LSFFSGAMGLDLGIEKS----GFDVRLACEVDKYCRQTIALNKPDTALLTDINKYSANEV 131

Query: 65  P---------DHDVLLAGFPCQPFSQAG 83
                     + D+++ G PCQ FS AG
Sbjct: 132 RLAAGLGKDEEIDLIMGGPPCQAFSTAG 159


>gi|320326171|gb|EFW82226.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
          str. B076]
          Length = 404

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPN----TLIF 53
          ++  +LF G GG+ +  E        E     E + ++  T + N    +P      L  
Sbjct: 1  MRSVELFAGAGGLAMGCEIA----GFEHLAVVEWDKWACDTVRENQKRGYPILAGWNLHE 56

Query: 54 GDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          GD+       IP D ++L  G PCQPFS  G
Sbjct: 57 GDVRAFDWSTIPQDIELLAGGPPCQPFSIGG 87


>gi|217965593|ref|YP_002351271.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|217334863|gb|ACK40657.1| modification methylase (cytosine-specific methyltransferase)
           [Listeria monocytogenes HCC23]
 gi|307569856|emb|CAR83035.1| methyltransferase [Listeria monocytogenes L99]
          Length = 411

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 29/108 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN-------------------------VECFFSSEINP 37
            +  LF G GG+ L LE    +                               +S+++  
Sbjct: 57  NVVSLFSGAGGLDLGLELAGVYAKKEQKEQPLELLNNYPRYKEIRKESLFNIIYSNDMFK 116

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY ANF + ++    DI KI   + P  ++++ GFPC  FS AG
Sbjct: 117 EANETYLANFQSNILKQELDIRKIP--NFPKCELMIGGFPCPGFSAAG 162


>gi|228982443|ref|ZP_04142702.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          Bt407]
 gi|228776626|gb|EEM24934.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          Bt407]
          Length = 418

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG G     ++    H      ++ + NPY+VKTY        +  DI KI   DI
Sbjct: 19 VDLFCGAGVGACGVKLAGYHM----AYAVDNNPYAVKTYNKMIGPHAVLADIRKINPNDI 74

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          PDHD ++A   C+ FS AG
Sbjct: 75 PDHDFMIATPVCKSFSVAG 93


>gi|212632918|ref|YP_002309443.1| site-specific DNA-methyltransferase [Shewanella piezotolerans WP3]
 gi|212554402|gb|ACJ26856.1| Site-specific DNA-methyltransferase (cytosine-specific) [Shewanella
           piezotolerans WP3]
          Length = 412

 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 22  FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPF 79
                +E  F +E++ ++ KT + N P+  ++ GDI+KI    I  D DVL  GFPCQ F
Sbjct: 93  MEQAGLESIFLNEMDKHACKTLRHNRPDWNVVEGDISKIDFSVIKQDVDVLTGGFPCQAF 152

Query: 80  SQAG 83
           S AG
Sbjct: 153 SYAG 156


>gi|172039658|ref|YP_001806159.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
 gi|171701112|gb|ACB54093.1| putative site-specific DNA-methyltransferase [Cyanothece sp. ATCC
          51142]
          Length = 321

 Score = 87.9 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--KI 59
          +K+ DLF G GG+ L  +            + +     VK YQ NF + +   D++  ++
Sbjct: 3  MKVIDLFAGCGGLSLGFQNA----GYTILAAYDNWEPVVKIYQKNFKHPIYKWDLSRYEL 58

Query: 60 KTQDIP--DHDVLLAGFPCQPFSQAG 83
            ++    + D+++ G PCQ FS AG
Sbjct: 59 YLEEFKSLNPDLIMGGPPCQDFSSAG 84


>gi|17229768|ref|NP_486316.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17131367|dbj|BAB73975.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 431

 Score = 87.9 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            DLF G GG+ L  EQ       +   + EI+P     ++ NFP   +            
Sbjct: 20  VDLFAGAGGMSLGFEQA----GFDVLAAVEIDPIHCAVHEYNFPFCSVLCKSVEETTGKE 75

Query: 54  -GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D +KI  Q+I   DV++ G PCQ FS  G
Sbjct: 76  IRDRSKINNQEI---DVIICGSPCQGFSLMG 103


>gi|304389869|ref|ZP_07371828.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
 gi|304327045|gb|EFL94284.1| possible DNA-cytosine methyltransferase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
          Length = 503

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          ++  ++SE++P++ +  + N P     GDI  +  
Sbjct: 4  LTLGSLFDGSGGFPL----AAKMVGIKPMWASEVDPFAFRVTKKNLPEVRHVGDINLLDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 60 GRLQPVDVITFGSPCQDLSIAG 81


>gi|298385398|ref|ZP_06994956.1| C-5 cytosine-specific DNA methylase superfamily [Bacteroides sp.
          1_1_14]
 gi|298261539|gb|EFI04405.1| C-5 cytosine-specific DNA methylase superfamily [Bacteroides sp.
          1_1_14]
          Length = 420

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 2  LKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K+    LF G            +    +  F  EINP+  +  +  FPN+  + DI K 
Sbjct: 1  MKLVHGSLFSG---FD-APSVAASWMGWKNAFHCEINPFCNEILKYWFPNSEHYEDITKT 56

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
                   DVL  GFPCQPFS AG
Sbjct: 57 DFSQWKGRIDVLTGGFPCQPFSLAG 81


>gi|284989342|ref|YP_003407896.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
 gi|284062587|gb|ADB73525.1| DNA-cytosine methyltransferase [Geodermatophilus obscurus DSM
           43160]
          Length = 671

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            DLF G GG+ L LEQ          FS++ +P +V+T+  +F    +  D+A     + 
Sbjct: 51  ADLFSGAGGMSLGLEQA----GFRVVFSADHDPEAVETHAHHFGGMSVDWDLADADAVER 106

Query: 65  -------PDHDVLLAGFPCQPFSQAG 83
                     ++L  G PCQPFS+AG
Sbjct: 107 VAATLRAVGVELLAGGPPCQPFSKAG 132


>gi|220930206|ref|YP_002507115.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
 gi|220000534|gb|ACL77135.1| DNA-cytosine methyltransferase [Clostridium cellulolyticum H10]
          Length = 719

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +E  ++SEI P+ ++      P    +GDI K+  
Sbjct: 4  LTLGSLFDGSGGFPLG----GLLCGIEPLWASEIEPFPIRVTTKRIPQMKHYGDINKLNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++  G PC   S AG
Sbjct: 60 AELPPVDIITFGSPCTDMSVAG 81


>gi|260580130|ref|ZP_05847960.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Haemophilus influenzae RdAW]
 gi|260093414|gb|EEW77347.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Haemophilus influenzae RdAW]
          Length = 304

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLF G GG+ L  E        E   + E    +++ Y+ NF + +   D+   K 
Sbjct: 1  MKCVDLFSGCGGLSLGFELA----GFEICAAFENWEKAIEIYKNNFSHPIYNIDLRNEKE 56

Query: 62 --QDIPDH--DVLLAGFPCQPFSQAG 83
            + I  +  D+++ G PCQ FS AG
Sbjct: 57 AVEKIKKYSPDLIMGGPPCQDFSSAG 82


>gi|316931670|ref|YP_004106652.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315599384|gb|ADU41919.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 390

 Score = 87.5 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF G+GG+ L L +  +    +    SEI   +    +  F      GD+A +K+
Sbjct: 1  MKIAGLFAGVGGLELGLHRAGH----DTLVFSEIWEPAGAVLERRFGGVPNVGDVASLKS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P D D++ AGFPCQ  SQAG
Sbjct: 57 --LPADVDLMTAGFPCQDLSQAG 77


>gi|209525992|ref|ZP_03274525.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209493518|gb|EDZ93840.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 430

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
            DLF G GG+ L LE        +   + E +      +  NFP    I  DI+K+ + +
Sbjct: 20  IDLFAGCGGMSLGLEAA----GFDVAVAVEFDAVHCLVHHFNFPYCHTICRDISKVTSAE 75

Query: 64  IPD----------HDVLLAGFPCQPFSQAG 83
           I +           D++  G PCQ FS  G
Sbjct: 76  ILEQLQLKYQDTQVDLIAGGPPCQGFSHIG 105


>gi|75906326|ref|YP_320622.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75700051|gb|ABA19727.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 431

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 19/91 (20%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            DLF G GG+ L  EQ       +   + EI+P     ++ NFP   +            
Sbjct: 20  VDLFAGAGGMTLGFEQA----GFDVLAAVEIDPIHCAVHEYNFPFCSVLCKSVEETTGKE 75

Query: 54  -GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D +KI  QDI   DV++ G PCQ FS  G
Sbjct: 76  IRDRSKINNQDI---DVIICGSPCQGFSLMG 103


>gi|42779474|ref|NP_976721.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
 gi|42735390|gb|AAS39329.1| DNA-cytosine methyltransferase [Bacillus cereus ATCC 10987]
          Length = 719

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +E  ++SEI P+ ++      P    +GDI K+  
Sbjct: 4  LTLGSLFDGSGGFPLG----GLLCGIEPLWASEIEPFPIRVTTKRIPQMKHYGDINKLNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           ++P  D++  G PC   S AG
Sbjct: 60 AELPPVDIITFGSPCTDMSVAG 81


>gi|158335733|ref|YP_001516905.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305974|gb|ABW27591.1| DNA-cytosine methyltransferase [Acaryochloris marina MBIC11017]
          Length = 397

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQD 63
           +LF G GG+   LE+      V+     E N  +  T   N+   L+   DI   K   
Sbjct: 7  LELFTGAGGLAKGLEKA----GVQHTAFVEWNKDACITLANNYSAQLVHNVDIRTFKFSQ 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PCQPFS  G
Sbjct: 63 FGHVDIVSGGPPCQPFSMGG 82


>gi|221232312|ref|YP_002511465.1| DNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|220674773|emb|CAR69346.1| putative DNA methylase [Streptococcus pneumoniae ATCC 700669]
          Length = 369

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIP---DHDVLLAGFPC 76
                EC    EI+ ++  +Y+A       +   DI  +    I      DV+  GFPC
Sbjct: 1  MESAGHECIGFCEIDKFARASYKAIHDTKGEIELHDITTVSDDTIRGIGHVDVICGGFPC 60

Query: 77 QPFSQAG 83
          Q FS AG
Sbjct: 61 QAFSIAG 67


>gi|171911881|ref|ZP_02927351.1| DNA-cytosine methyltransferase [Verrucomicrobium spinosum DSM
          4136]
          Length = 330

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD- 63
           DLF G GG+ L  E       +      E +  +  +Y+ N            +  +  
Sbjct: 23 IDLFAGCGGLALGFESA----GISTIGF-EKDRDACASYRRNLGGECFE---TLLTPESQ 74

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
           P  D+++ G PCQPFS  G
Sbjct: 75 FPKCDLIIGGPPCQPFSVGG 94


>gi|39933426|ref|NP_945702.1| site-specific DNA-methyltransferase [Rhodopseudomonas palustris
          CGA009]
 gi|192288783|ref|YP_001989388.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|39647272|emb|CAE25793.1| possible site-specific DNA-methyltransferase [Rhodopseudomonas
          palustris CGA009]
 gi|192282532|gb|ACE98912.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 390

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF G+GG+ L L +  +    +    SEI   +    +  F      GD+A +K+
Sbjct: 1  MKVAGLFAGVGGLELGLHRAGH----DTLVFSEIWDPAGAVLERRFGGVPNVGDVASLKS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P D D++ AGFPCQ  SQAG
Sbjct: 57 --LPADVDLMTAGFPCQDLSQAG 77


>gi|94994344|ref|YP_602442.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|94547852|gb|ABF37898.1| DNA-cytosine methyltransferase [Streptococcus pyogenes MGAS10750]
          Length = 119

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          +K  DLF GIGG RL L    +    EC    EI+ ++ ++Y+A +     + F DI ++
Sbjct: 4  MKFLDLFAGIGGFRLGLINQCH----ECIGFCEIDKFARQSYKAIYETEGEIEFHDIRQV 59

Query: 60 KTQDIP----DHDVLLAGF 74
            QD        D++  GF
Sbjct: 60 TDQDFRQLRGQVDIICGGF 78


>gi|254412384|ref|ZP_05026158.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
 gi|196180694|gb|EDX75684.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
          chthonoplastes PCC 7420]
          Length = 221

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 17/96 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ-----ANFPNTLIFGD 55
          ML    LF G GG+ + + Q       E     EI+PY  KT +      N    LI  D
Sbjct: 1  MLSALSLFSGAGGMDIGVRQA----GFEILADIEIDPYCCKTIRSAMDRENLRTLLIEKD 56

Query: 56 IAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
          I ++    +         D D+L  G PCQ FSQAG
Sbjct: 57 IKQVDPSHLIRELTIQPGDLDLLFGGSPCQSFSQAG 92


>gi|307941961|ref|ZP_07657314.1| modification methylase NgoPII [Roseibium sp. TrichSKD4]
 gi|307774867|gb|EFO34075.1| modification methylase NgoPII [Roseibium sp. TrichSKD4]
          Length = 390

 Score = 87.5 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF G GG+ L  E       +    + + + Y+V +Y  N        D+ ++ +
Sbjct: 1  MKAISLFSGCGGMDLGFENA----GISILAAYDSDSYAVSSYNRNVKLCARRIDVNRLDS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            IP + D+L+A  PCQ FS AG
Sbjct: 57 --IPSNFDILIATPPCQGFSTAG 77


>gi|239812977|ref|YP_002941924.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
 gi|239809042|gb|ACS26105.1| DNA-cytosine methyltransferase [Geobacillus sp. WCH70]
          Length = 370

 Score = 87.1 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M      F G GG+ L +++           S EI     +T + NF    ++ GDI + 
Sbjct: 1  MANAISFFAGAGGLDLGIKRA----GFNILLSVEIEETYCQTLRQNFEGLNVVCGDIMEY 56

Query: 60 KTQDI---------PDHDVLLAGFPCQPFSQAG 83
            + +          + D+++ G PCQ FS AG
Sbjct: 57 SRERVYQEAGLAEHEEVDLMIGGSPCQSFSTAG 89


>gi|326381717|ref|ZP_08203411.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326199964|gb|EGD57144.1| cytosine-specific methyltransferase [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 356

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK- 60
             DLF G GG+   L+Q+     +EC  +S+    ++KTY  N P+   I  D+ K+  
Sbjct: 10 TFIDLFAGAGGLSWGLQQS----GMECLLASDYWGDALKTYSHNMPDHPTIECDVRKLTM 65

Query: 61 ---TQDIPD-HDVLLAGFPCQPFSQAG 83
              Q +P+  D ++ G PCQ +S  G
Sbjct: 66 PKLAQLLPEKPDWVVGGPPCQGYSTVG 92


>gi|121592996|ref|YP_984892.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120605076|gb|ABM40816.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 449

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 16/97 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQT---FNHRNVECFFSSEINP-----YSVKTYQANFP-NTLI 52
           L++ +LF G+GG R  LEQ          +  ++++  P     ++ + Y+A +    L+
Sbjct: 12  LRVMELFAGVGGFRQGLEQVRTPAQQAAFKVVWANQYEPASKKQWAAEVYRARWGVQDLV 71

Query: 53  FGDIAKIKTQ-------DIPDHDVLLAGFPCQPFSQA 82
             DI ++  +       D    DVL+ GFPCQ +S A
Sbjct: 72  NEDIFEVLQEPALMASLDALCPDVLVGGFPCQDYSVA 108


>gi|167644366|ref|YP_001682029.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167644566|ref|YP_001682229.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167346796|gb|ABZ69531.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167346996|gb|ABZ69731.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 440

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA--KIK 60
          + DLF G GG+     Q            S+ +P ++ TY  NFP    I+GD+   ++K
Sbjct: 10 VVDLFAGAGGLSEGFRQA----GFSIIAGSDNDPDALATYATNFPEARSIWGDVRTPEVK 65

Query: 61 TQDI---PDHDVLLAGFPCQPFSQ 81
           Q +       +++ G PCQ FSQ
Sbjct: 66 AQILDAARSASIIVGGPPCQAFSQ 89


>gi|328710652|ref|XP_001949338.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like
          [Acyrthosiphon pisum]
          Length = 328

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +++ + F GIGG+   L++  N  N E   + +IN  +   Y+  FP+T +   +I  + 
Sbjct: 1  MRVIEFFSGIGGMHFALKE-CNLENFEVVLAVDINTVANAVYRHFFPSTNLRDLNILSLS 59

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +       D+LL   PCQPF++ G
Sbjct: 60 PEQFDAYHPDILLMSPPCQPFTRNG 84


>gi|294673126|ref|YP_003573742.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
          23]
 gi|294473536|gb|ADE82925.1| DNA methylase, C-5 cytosine-specific family [Prevotella
          ruminicola 23]
          Length = 342

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          KI  +F G+GGI         H   +  F+++    +  +++AN+P+  ++   IA +  
Sbjct: 4  KIVSIFSGVGGIDTGFS----HAGFQTVFANDNWQNACDSFKANYPDAEVVCASIADVDF 59

Query: 62 QDIP----DHDVLLAGFPCQPFS 80
          ++I     D D L+ G PC PFS
Sbjct: 60 KEIKKKYGDIDGLVGGPPCPPFS 82


>gi|40063394|gb|AAR38205.1| C-5 cytosine-specific DNA methylase [uncultured marine bacterium
           580]
          Length = 435

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 26/107 (24%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV---------------ECFFSSEINP-----YSVK 41
           LK+ +LF G+GG RL LE    +++                E  +S++  P      +  
Sbjct: 4   LKVAELFAGVGGFRLGLEGWKKNKDFFSASSDYKKKMPPLFEVVWSNQFEPLTKSQPASD 63

Query: 42  TYQANFPNTLIFG---DIAKI---KTQDIPDHDVLLAGFPCQPFSQA 82
            Y+  F ++       DI  +       IP HD+L+ GFPCQ +S A
Sbjct: 64  IYEQRFNSSTSLHSRVDIEHLVKNDIHSIPFHDLLVGGFPCQDYSVA 110


>gi|167648711|ref|YP_001686374.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167351141|gb|ABZ73876.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 375

 Score = 87.1 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIK 60
            + F G G  RL L +        C F+++ +P    TY+ N  +       GD+ KI 
Sbjct: 9  FYEFFAGGGMARLGLGEA-----WTCAFANDFDPVKAATYRDNHKDAATHFHEGDVWKIA 63

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D+P   D+  A  PCQ FS AG
Sbjct: 64 AADLPGQADLAWASSPCQDFSLAG 87


>gi|229143653|ref|ZP_04272076.1| DNA-cytosine methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228639832|gb|EEK96239.1| DNA-cytosine methyltransferase [Bacillus cereus BDRD-ST24]
          Length = 538

 Score = 87.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
          +K+ DLFCG GG     E+       E   + +I   ++ T+  N  N       GDI +
Sbjct: 1  MKVIDLFCGAGGFSEGFERA----GFEIVRAYDIWAPAILTHNQNHGNGKQIAFKGDIYE 56

Query: 59 IK-------TQDIPDHDVLLAGFPCQPFS 80
          I         + IPD +V++   PC  FS
Sbjct: 57 ISMLDNEEFEKWIPDTEVIIGSPPCIAFS 85


>gi|219871000|ref|YP_002475375.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          parasuis SH0165]
 gi|219691204|gb|ACL32427.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          parasuis SH0165]
          Length = 295

 Score = 87.1 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 36/57 (63%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++C   SEI+P    TYQ  F +    GD+ +I  Q +PD DV+LAGFPCQ FS AG
Sbjct: 1  MQCVGHSEIDPEPDTTYQIFFNDRNNLGDLTQIDIQKLPDFDVMLAGFPCQTFSIAG 57


>gi|310828705|ref|YP_003961062.1| hypothetical protein ELI_3130 [Eubacterium limosum KIST612]
 gi|308740439|gb|ADO38099.1| Phage-related protein [Eubacterium limosum KIST612]
          Length = 262

 Score = 86.7 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E        E     E   +  K  + ++P+   + D+  +  
Sbjct: 6  LTHLSLFTGIGGIDLAAEWA----GFETVGQCEFADFPTKVLKKHWPDVPRWRDVKDVTR 61

Query: 62 QDIPD------HDVLLAGFPCQPFSQAG 83
          +           D++  GFPCQP S  G
Sbjct: 62 ESFEQWTGLQTVDLISGGFPCQPHSVIG 89


>gi|330900978|gb|EGH32397.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 340

 Score = 86.7 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 2  LKI----TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DI 56
          +K      DLF G GG+   L+        E   + EI+  + KT+  N  +  + G DI
Sbjct: 1  MKFTFTAIDLFSGCGGLTQGLKDA----GYEVKGAVEIDSKARKTFTMNHADVPLVGEDI 56

Query: 57 AKIKTQD--------IPDHDVLLAGFPCQPFS 80
           ++  +         I + D+L    PCQ FS
Sbjct: 57 RQLSAETLMRESGLAIEELDLLAGCPPCQGFS 88


>gi|221236677|ref|YP_002519114.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
 gi|220965850|gb|ACL97206.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
          Length = 381

 Score = 86.7 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI 59
          +  + F G G  RL L       +  C F+++ +P    TY+ANF         GD+  +
Sbjct: 15 RFLEFFAGGGMARLGL-----GADWACAFANDFDPVKAATYRANFADAGKHFQEGDVFAL 69

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + +PD D+  A  PCQ FS
Sbjct: 70 SAERLPDADLAWASSPCQDFS 90


>gi|16127856|ref|NP_422420.1| DNA-cytosine methyltransferase [Caulobacter crescentus CB15]
 gi|13425378|gb|AAK25588.1| DNA-cytosine methyltransferase [Caulobacter crescentus CB15]
          Length = 374

 Score = 86.7 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI 59
          +  + F G G  RL L       +  C F+++ +P    TY+ANF         GD+  +
Sbjct: 8  RFLEFFAGGGMARLGL-----GADWACAFANDFDPVKAATYRANFADAGKHFQEGDVFAL 62

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + +PD D+  A  PCQ FS
Sbjct: 63 SAERLPDADLAWASSPCQDFS 83


>gi|29566291|ref|NP_817858.1| gp7 [Mycobacterium phage Corndog]
 gi|29425016|gb|AAN01939.1| gp7 [Mycobacterium phage Corndog]
          Length = 196

 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  LF G G +   +EQ          +  E +  +       +P     GD+ ++   
Sbjct: 8  RIGSLFSGSGMLDRAVEQA---TGGRVVWHCENDRAAKLVLAERWPGVPNLGDVRRVNWS 64

Query: 63 DIP----DHDVLLAGFPCQPFSQAG 83
           I       D+L  GFPC   S AG
Sbjct: 65 RIRWSLGPVDILCGGFPCTDISPAG 89


>gi|325478716|gb|EGC81827.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 480

 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG  L          ++  ++SE+ P+ ++  Q N P     GDI  I  
Sbjct: 5  LRLGSLFDGSGGFPL----AAIFCEIKPIWASEVEPFPIRVTQKNLPQVKHLGDINDIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ  S AG
Sbjct: 61 SGIEPVDIISFGSPCQDLSIAG 82


>gi|172038906|ref|YP_001805407.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171700360|gb|ACB53341.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 427

 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G+GG+ L  EQ       +   S E++P     ++ NFP  T I   + +I    
Sbjct: 9  VDLFAGVGGMTLGFEQA----GFDVLASVELDPIHCSIHRYNFPFWTTICASVTRITANQ 64

Query: 64 IPD--------HDVLLAGFPCQPFSQAG 83
          I +         DV+  G PCQ FS  G
Sbjct: 65 IRELSSIQNQPIDVVFGGPPCQGFSLMG 92


>gi|119719333|ref|YP_919828.1| DNA-cytosine methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524453|gb|ABL77825.1| DNA-cytosine methyltransferase [Thermofilum pendens Hrk 5]
          Length = 320

 Score = 86.7 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L + DLF G GG      +           + E++P + + ++ NFP   +F  D+ ++ 
Sbjct: 5  LTVLDLFAGAGGFSRGFAE----EGFSIVGAVEVDPLAAEAFRLNFPGARVFEEDVREVH 60

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQA 82
          ++DI       P   V++ G PC+ +S+A
Sbjct: 61 SRDILLGLGFRPR--VIIGGPPCEAYSRA 87


>gi|300867524|ref|ZP_07112175.1| putative Modification methylase HgiDII [Oscillatoria sp. PCC 6506]
 gi|300334518|emb|CBN57345.1| putative Modification methylase HgiDII [Oscillatoria sp. PCC 6506]
          Length = 361

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           +L   DLFCG GG+   L     + N+    + + NP   KTY+ N PN  ++  DIA +
Sbjct: 18  LLTAVDLFCGCGGVTEGL----TNHNIRVVAAVDNNPIVCKTYKINHPNVNLYESDIALL 73

Query: 60  KTQDIP-------DHDVLLAGFPCQPFS 80
              DI        D D+L+   PCQPFS
Sbjct: 74  DPMDIRQNDLKGADVDILVVCAPCQPFS 101


>gi|323694940|ref|ZP_08109090.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
 gi|323501030|gb|EGB16942.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
          Length = 338

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGG+ L  E        E     E   Y     + ++P+   F DI     
Sbjct: 4  LTHVSLFSGIGGLDLAAEAA----GFETVCQCEWADYPYSVLERHWPDVPKFRDITTFTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 60 EAFFEKTGLETVTIISGGFPCQPFSTAG 87


>gi|192292294|ref|YP_001992899.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|192286043|gb|ACF02424.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 500

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAK 58
           ++ DLF G GG+ L      +    E   + E +P + K++  NF    P  +   DI+ 
Sbjct: 21  RVLDLFSGCGGLSLGF----HAVGCEIVAAVEHDPDAAKSHGLNFHAGSPVHMEPRDISS 76

Query: 59  IKTQDIPD----------HDVLLAGFPCQPFSQAG 83
               ++             DV++ G PCQ F++ G
Sbjct: 77  TPPANLTKALGLGHHSLAFDVVIGGPPCQAFARVG 111


>gi|149373121|ref|ZP_01892009.1| site-specific DNA-methyltransferase [unidentified eubacterium
           SCB49]
 gi|149354269|gb|EDM42838.1| site-specific DNA-methyltransferase [unidentified eubacterium
           SCB49]
          Length = 735

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTY--QANF----PNTLIFG 54
               DLF G GG      Q  ++    +   +++IN     T+  + N         +  
Sbjct: 119 FTFVDLFAGAGGFSEGFLQAEHNNKFFDFVVANDINENCELTHVVRYNHQLGLDAEFLKQ 178

Query: 55  DIAK-------IKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI +       ++  +    DV+  G PCQ FS AG
Sbjct: 179 DITEPDFLDNLLEKINGRKIDVVCGGPPCQSFSLAG 214


>gi|218895987|ref|YP_002444398.1| modification methylase DdeI [Bacillus cereus G9842]
 gi|218542827|gb|ACK95221.1| modification methylase DdeI [Bacillus cereus G9842]
          Length = 468

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAKI 59
             DLFCG GG+ + LEQ     N E  F+ + +  + K+Y  N P    ++   GDI + 
Sbjct: 92  FIDLFCGAGGLSVGLEQ----YNFEPIFALDFDLSASKSYLFNRPFLSESSFYNGDIKEF 147

Query: 60  KT-QDIPDHDVLLAGFPCQPFSQA 82
               D+P   V++ G PCQ FS A
Sbjct: 148 LLHNDLPKAPVIVGGPPCQGFSNA 171


>gi|291564095|emb|CBL42911.1| Site-specific DNA methylase [butyrate-producing bacterium SS3/4]
          Length = 361

 Score = 86.7 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|291544225|emb|CBL17334.1| DNA-methyltransferase (dcm) [Ruminococcus sp. 18P13]
          Length = 407

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           +    +LF G GG+ L +E+             E++  +  T + N P   +I  DIA +
Sbjct: 73  IFSTIELFAGAGGLALGVEKA----GFNTLGLVEVDKDASDTLRKNRPEWRVINDDIANV 128

Query: 60  KTQDIPDH--------DVLLAGFPCQPFSQAG 83
              D+ ++        D+L  G PCQ FS AG
Sbjct: 129 SCLDLQEYFGLKQGELDLLSGGAPCQSFSYAG 160


>gi|238923216|ref|YP_002936731.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238925032|ref|YP_002938548.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238874890|gb|ACR74597.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238876707|gb|ACR76414.1| DNA-cytosine methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 361

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|157953197|ref|YP_001498088.1| hypothetical protein AR158_C006R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156067845|gb|ABU43552.1| hypothetical protein AR158_C006R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 333

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   LF G GG    ++       ++    SE++  ++KT+  N P+ +  GD++ I  
Sbjct: 4  LRAISLFAGAGGDTFGMKMA----GIDVVAFSELDIDAIKTHNRNNPDCVALGDVSLIDE 59

Query: 62 QDIP----DHDVLLAGFPCQPFSQAG 83
            +     + D++ AGFPCQ FS AG
Sbjct: 60 TMLSPFVDNVDIIFAGFPCQGFSNAG 85


>gi|160893193|ref|ZP_02073981.1| hypothetical protein CLOL250_00739 [Clostridium sp. L2-50]
 gi|160945817|ref|ZP_02093043.1| hypothetical protein FAEPRAM212_03350 [Faecalibacterium
          prausnitzii M21/2]
 gi|156865276|gb|EDO58707.1| hypothetical protein CLOL250_00739 [Clostridium sp. L2-50]
 gi|158443548|gb|EDP20553.1| hypothetical protein FAEPRAM212_03350 [Faecalibacterium
          prausnitzii M21/2]
          Length = 361

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|323484993|ref|ZP_08090347.1| hypothetical protein HMPREF9474_02098 [Clostridium symbiosum
          WAL-14163]
 gi|323401735|gb|EGA94079.1| hypothetical protein HMPREF9474_02098 [Clostridium symbiosum
          WAL-14163]
          Length = 361

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   ++  G PCQ  S  G
Sbjct: 60 GKIPPVHIITFGSPCQNLSLIG 81


>gi|284052085|ref|ZP_06382295.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 382

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQD 63
           +LF G GG+   LE       +E     EI+  +  T   N+ P  + + DI  +   +
Sbjct: 7  LELFAGAGGLAKGLEMA----GIEHKALVEIDHNACLTLAGNYKPELIYYVDIRSLNFAE 62

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PCQPFS  G
Sbjct: 63 FGHIDLISGGPPCQPFSMGG 82


>gi|223983703|ref|ZP_03633876.1| hypothetical protein HOLDEFILI_01157 [Holdemania filiformis DSM
          12042]
 gi|223964334|gb|EEF68673.1| hypothetical protein HOLDEFILI_01157 [Holdemania filiformis DSM
          12042]
          Length = 340

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGG+ L  E              E   Y     + ++P    F DI     
Sbjct: 4  LTHVSLFSGIGGLDLAAEAA----GFRTVCQCEWADYPYSVLEKHWPEVPRFRDITTFTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            V+  GFPCQPFS AG
Sbjct: 60 EAFFEKTGLETVTVISGGFPCQPFSTAG 87


>gi|134287405|ref|YP_001110788.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
          phiC2]
 gi|93117243|gb|ABE99533.1| putative cytosine-C5 specific DNA methylase [Clostridium phage
          phiC2]
          Length = 316

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKTQDIPDHDVLLAGFPCQP 78
                +C    E + ++  +Y A      +     DI +I+T++IP  DV   GFPCQ 
Sbjct: 1  MEKAGHKCLGHCEYDKFANLSYNAMHKPKEDEWFERDIREIRTENIPRADVWCFGFPCQD 60

Query: 79 FSQAG 83
           S AG
Sbjct: 61 ISVAG 65


>gi|320321292|gb|EFW77421.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
          str. B076]
          Length = 410

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L   DLF G GG+   L +          +++EI+P   +TY AN P+T +   DI ++ 
Sbjct: 11 LTSLDLFAGAGGLSEGLREA----GFTSLYANEISPRYAQTYGANHPSTHVDNQDIREVD 66

Query: 61 TQDIP--------DHDVLLAGFPCQPFSQ 81
           + +         + D++  G PCQ FS 
Sbjct: 67 ARKVRKSLGLKRGELDLIAGGPPCQGFSI 95


>gi|189459597|ref|ZP_03008382.1| hypothetical protein BACCOP_00223 [Bacteroides coprocola DSM 17136]
 gi|189433679|gb|EDV02664.1| hypothetical protein BACCOP_00223 [Bacteroides coprocola DSM 17136]
          Length = 387

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NTLIFGDI 56
           +   DLF G GG+      +      +   ++EI+   + T + N          I GDI
Sbjct: 137 MNFVDLFAGCGGMSEGFIMS----GFQLIAANEIDKSIMATNRYNHSQYAPAENFILGDI 192

Query: 57  AKIKTQDI-------PDHDVLLAGFPCQPFSQAG 83
            + +T+            +V++ G PCQ FS AG
Sbjct: 193 TQEETKARIMEACGNTPVNVVVGGPPCQGFSYAG 226


>gi|157952312|ref|YP_001497204.1| hypothetical protein NY2A_B008R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155122539|gb|ABT14407.1| hypothetical protein NY2A_B008R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 331

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   LF G GG    ++       V+    SE++  ++KT+ +N P+ +  GD++ I  
Sbjct: 4  LRAISLFAGAGGDTFGMKLA----GVDVVAFSELDADAMKTHNSNNPDCVALGDVSLIDE 59

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
            +      D++ AGFPCQ FS AG
Sbjct: 60 AMLSQFVNIDIIFAGFPCQGFSNAG 84


>gi|288919495|ref|ZP_06413826.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
 gi|288349098|gb|EFC83344.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
          Length = 642

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-KTQ 62
           + DLF G GG+ L LEQ      +      + +P + +T++ +F    +  D++   +  
Sbjct: 33  VADLFSGAGGLSLGLEQA----GLRVVLGVDHDPEATETHRHHFAGLTLDQDLSDPGRVD 88

Query: 63  DIP------DHDVLLAGFPCQPFSQAG 83
           +I         DV++ G PCQPFS+AG
Sbjct: 89  EIAGLIRSLRLDVVVGGPPCQPFSRAG 115


>gi|284046510|ref|YP_003396850.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
 gi|283950731|gb|ADB53475.1| DNA-cytosine methyltransferase [Conexibacter woesei DSM 14684]
          Length = 424

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAK-- 58
          L   DLFCG GG+   L        +    +++ +P +  TY+ NFP   L+ GD+    
Sbjct: 7  LTAVDLFCGAGGLSQGLADA----GMHVVAAADHDPDACATYRRNFPRTVLVEGDLTSRE 62

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQ 81
               +      D D+L  G PCQ +SQ
Sbjct: 63 KHEALLDALQGSDLDLLAGGPPCQAYSQ 90


>gi|228950066|ref|ZP_04112251.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228809593|gb|EEM56029.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 445

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          +  +F G GG+     ++    +     + E++P +  TY+ N P T ++  DI  +K  
Sbjct: 15 VIGIFAGCGGLDTGFSKS----DFNVQLAIELDPDACNTYKKNHPETEVWNRDIKTVKGD 70

Query: 63 DIPDHD-----VLLAGFPCQPFSQ 81
          +I         +LL G PCQ FS 
Sbjct: 71 EIRKLVGNKPLILLGGSPCQSFSI 94


>gi|227112465|ref|ZP_03826121.1| putative C-5 cytosine-specific DNA methylase [Pectobacterium
          carotovorum subsp. brasiliensis PBR1692]
          Length = 390

 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 22/96 (22%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----------TLI 52
          K  DLF G GG  L    +     V+   + E +  + +TY+ NF               
Sbjct: 4  KAIDLFAGAGGFTL----SAIEAGVDVIAAVEFDKSAAETYRKNFIEGKKRKIELRSGPQ 59

Query: 53 FGDIAKIKTQDIP--------DHDVLLAGFPCQPFS 80
           GDI  I   ++         + D++L G PCQ FS
Sbjct: 60 KGDINNITPLELRQSLELERGELDIILGGPPCQGFS 95


>gi|224036442|pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
          Methyltransferase Encoded Within Prophage Cp-933r
          (E.Coli)
          Length = 376

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          L + DLF G+GG+ L   +       +   + EI+ +++ T+  NFP +L    D++ + 
Sbjct: 3  LNVIDLFSGVGGLSLGAARA----GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLN 58

Query: 61 TQDIPDH-------DVLLAGFPCQPFSQAG 83
           + I          D ++ G PCQ FS  G
Sbjct: 59 AEIIKGFFKNDMPIDGIIGGPPCQGFSSIG 88


>gi|94968156|ref|YP_590204.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550206|gb|ABF40130.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 359

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            +L  G GG  L LEQ   +         EIN ++ +T + N PN  ++ GD+       
Sbjct: 46  LELCAGAGGQALGLEQAGINH----VALVEINKHACETLRLNRPNWKVVEGDLQTFDPSP 101

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
               D++ AG PC PFS AG
Sbjct: 102 YKGADIVSAGLPCPPFSVAG 121


>gi|323138162|ref|ZP_08073235.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322396624|gb|EFX99152.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 381

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQ 62
            + F G G  R  L          C F+++ +    ++Y+AN+    +  GD+ +I T 
Sbjct: 7  FYEFFAGGGMARAGL-----GPGWACLFANDFDRKKAESYRANWGGGEMHVGDVREITTA 61

Query: 63 DIP-DHDVLLAGFPCQPFSQAG 83
           +P   D++ A FPCQ  S AG
Sbjct: 62 QLPGRADLVWASFPCQDLSLAG 83


>gi|299065029|emb|CBJ36133.1| DNA-cytosine methyltransferase [Ralstonia solanacearum CMR15]
          Length = 385

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L         +C F+++ +     TY+ N+  + L+ GD+ ++
Sbjct: 1  MGSFYEFFAGGGMARAGL-----GEGWQCLFANDFDHKKGVTYRQNWGEDELLTGDVRQV 55

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQAG 83
          K  ++PD  +++   FPCQ  S AG
Sbjct: 56 KPNNLPDRANLIWGSFPCQDLSLAG 80


>gi|225377327|ref|ZP_03754548.1| hypothetical protein ROSEINA2194_02974 [Roseburia inulinivorans
          DSM 16841]
 gi|225210858|gb|EEG93212.1| hypothetical protein ROSEINA2194_02974 [Roseburia inulinivorans
          DSM 16841]
          Length = 361

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+    GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPVWASEIEKAPISITKRHFPDMAHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   V+  G PCQ  S  G
Sbjct: 60 GKIPPVHVITFGSPCQNLSLIG 81


>gi|291566149|dbj|BAI88421.1| type II DNA modification methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 379

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQD 63
           +LF G GG+   LE       +E     EI+  +  T   N+ P  + + DI  +   +
Sbjct: 4  LELFAGAGGLAKGLEMA----GIEHKALVEIDHNACLTLAGNYKPELIYYVDIRSLNFAE 59

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D++  G PCQPFS  G
Sbjct: 60 FGHIDLISGGPPCQPFSMGG 79


>gi|270307689|ref|YP_003329747.1| DNA-cytosine methyltransferase [Dehalococcoides sp. VS]
 gi|270153581|gb|ACZ61419.1| DNA-cytosine methyltransferase [Dehalococcoides sp. VS]
          Length = 365

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 13/85 (15%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
            DLFCG GG+ + L++           + + +P ++ TY++N  +  ++  DI K+K   
Sbjct: 20  IDLFCGCGGLTVGLKRA----GFRVIGAVDNDPIAITTYRSNHRDVKVWKKDITKLKIDT 75

Query: 64  IP--------DHDVLLAGFPCQPFS 80
           +         + D++    PCQ F+
Sbjct: 76  VKKRLKLRKGELDLVAGCPPCQGFT 100


>gi|298206640|ref|YP_003714819.1| site-specific DNA-methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83849270|gb|EAP87138.1| site-specific DNA-methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 735

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTY--QANF----PNTLIFG 54
               DLF G GG      Q  ++    +   +++IN     T+  + N         +  
Sbjct: 119 FTFVDLFAGAGGFSEGFLQAEHNNKFFDFVVANDINENCELTHVVRYNHQLGLDAEFLKQ 178

Query: 55  DIAK-------IKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI +       ++  +    DV+  G PCQ FS AG
Sbjct: 179 DITEPDFLDNLLEKINGRKIDVVCGGPPCQSFSLAG 214


>gi|268680630|ref|YP_003305061.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618661|gb|ACZ13026.1| DNA-cytosine methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 398

 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 31/113 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-----------------------VECFFSSEINPY 38
           LK+   F G GG+ L LE  F  +                         +  F+ +I P 
Sbjct: 4   LKVVSFFSGCGGLDLGLEGDFWVKAKSVKDKTWIKERHKNFVKLAPTAFQTVFACDIKPS 63

Query: 39  SVKTYQANF--PNTLIFGDIAKIKTQ------DIPDHDVLLAGFPCQPFSQAG 83
           + K ++  F   N      I ++  +        P+ DV+  GFPCQ FS AG
Sbjct: 64  AKKAWEYYFQRDNVFHLESIVELVKKAKEGTFTFPNADVVTGGFPCQDFSVAG 116


>gi|54020626|ref|YP_116141.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           232]
 gi|53987799|gb|AAV28000.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 416

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
               DLF G GG+   L             S EI   + +TY  NF            GD
Sbjct: 92  YNFIDLFSGAGGLSCGLVMA----GFLPLASLEIMKQAFETYAYNFKKRSKNKELFKLGD 147

Query: 56  IAKIKTQ-DIPDH------DVLLAGFPCQPFSQAG 83
           I   K + +  DH      D++  GFPCQ FS AG
Sbjct: 148 IRDSKIKSEFYDHFKDQELDLIAGGFPCQGFSMAG 182


>gi|47207937|emb|CAF91437.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 405

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          +++ +L+ GIGG+   L+++      +   + +IN  +   Y+ NFP+T +    I  I 
Sbjct: 1  MRVLELYSGIGGMHYALKES--EVCHQVVAAVDINTTANDVYRHNFPSTALLNKTIEGIT 58

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      DV+L   PCQPF++ G
Sbjct: 59 LEEFNQLSFDVILMSPPCQPFTRIG 83


>gi|237753192|ref|ZP_04583672.1| cytosine specific DNA methyltransferase [Helicobacter
          winghamensis ATCC BAA-430]
 gi|229375459|gb|EEO25550.1| cytosine specific DNA methyltransferase [Helicobacter
          winghamensis ATCC BAA-430]
          Length = 354

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           ++ DLFCG GG    ++Q   +   E   + +    ++ T+  NFP   +I GDI  IK
Sbjct: 6  FRVLDLFCGAGGFSSGIDQ---NPYFETLLALDFEQSAINTFSHNFPKAQVICGDITDIK 62

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQAG 83
           ++           ++++ G PCQ FS  G
Sbjct: 63 IKNTLIKQAKRLKVNMIIGGPPCQGFSLKG 92


>gi|67924199|ref|ZP_00517640.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67853953|gb|EAM49271.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 358

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           +K  +LF G GG+ L LE       +      E++   V T Q N  N T+   D++ I 
Sbjct: 72  IKTIELFAGCGGMALGLENAGVRHEL----LVEVSKDCVNTLQKNRQNWTIFQEDVSNID 127

Query: 61  TQD-IPDHDVLLAGFPCQPFSQAG 83
            Q      D++  GFPCQ FS AG
Sbjct: 128 FQQYYGKIDIVSGGFPCQAFSYAG 151


>gi|328769954|gb|EGF79997.1| hypothetical protein BATDEDRAFT_35320 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 621

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +  + F GIGG+   LE      + +   + +INP +   Y  NF    +   I  +  +
Sbjct: 6  RALEFFSGIGGMHFGLEWA--AIDAKVVAAFDINPQANACYNHNFGLEPVEKSIQDLNPK 63

Query: 63 DIPDHD--VLLAGFPCQPFSQAG 83
          ++  +D    L   PCQP+++ G
Sbjct: 64 ELERYDANCWLMSPPCQPYTRTG 86


>gi|113474395|ref|YP_720456.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110165443|gb|ABG49983.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 421

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   S E++P     ++ NFP  +++  ++ ++   +
Sbjct: 7  IDLFAGAGGMTLGFEQA----GFDIPISVELDPIHCAIHKFNFPFWSILCRNVVELTGNE 62

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I         + DV+  G PCQ FSQ G
Sbjct: 63 IREKLNIPNREIDVIFGGPPCQGFSQIG 90


>gi|326772743|ref|ZP_08232027.1| modification methylase XorII [Actinomyces viscosus C505]
 gi|326637375|gb|EGE38277.1| modification methylase XorII [Actinomyces viscosus C505]
          Length = 364

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +++ DLF G GG+        +        + E++P +  +Y+A FP T ++ G I    
Sbjct: 6  IRVLDLFAGAGGLTAGFHTASSR--FRSIAAVEMDPEAAASYRATFPKTEVYAGAIQDWL 63

Query: 61 TQ-DIP-DHDVLLAGFPCQPFSQAG 83
           +  IP   DV++ G PCQ FS  G
Sbjct: 64 AEGTIPTGVDVVVGGPPCQGFSTLG 88


>gi|315654951|ref|ZP_07907856.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          51333]
 gi|315490912|gb|EFU80532.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii ATCC
          51333]
          Length = 508

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG  L          +E  ++SEI P+ +       P     GDI  I  
Sbjct: 5  LRLGSLFDGSGGFPL----AATKVGIEPVWASEIEPFPILVTTTRLPQMQHLGDICDIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 61 SQLEPVDVVTFGSPCQDLSVAG 82


>gi|229492462|ref|ZP_04386265.1| DNA-cytosine methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320448|gb|EEN86266.1| DNA-cytosine methyltransferase [Rhodococcus erythropolis SK121]
          Length = 387

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +             EI+P +    ++ F +  + GD+ K++   +P 
Sbjct: 10 LFAGIGGLELGLSE----HGWNTELLCEIDPGAQAVLRSRFADVPLHGDVTKLRA--LPS 63

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 64 DIELVAAGFPCQDLSQAG 81


>gi|226303815|ref|YP_002763773.1| modification methylase [Rhodococcus erythropolis PR4]
 gi|226182930|dbj|BAH31034.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 392

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +             EI+P +    ++ F +  + GD+ K++   +P 
Sbjct: 15 LFAGIGGLELGLSE----HGWNTELLCEIDPGAQAVLRSRFADVPLHGDVTKLRA--LPS 68

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 69 DIELVAAGFPCQDLSQAG 86


>gi|156937913|ref|YP_001435709.1| DNA-cytosine methyltransferase [Ignicoccus hospitalis KIN4/I]
 gi|156566897|gb|ABU82302.1| DNA-cytosine methyltransferase [Ignicoccus hospitalis KIN4/I]
          Length = 315

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
            DLF G GG  L  E        E     + +    ++Y AN P  L    D++K+ ++
Sbjct: 5  FFDLFSGAGGFALGFEMA----GFEGVLGVDNDKAPARSYAANHPKALTLVEDVSKLSSK 60

Query: 63 DIP----DHDVLLAGFPCQPFSQA 82
           I     D DV++   PC+P++ A
Sbjct: 61 TIERLVGDVDVVIGSPPCEPYTAA 84


>gi|323693680|ref|ZP_08107879.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
 gi|323502294|gb|EGB18157.1| type II DNA modification methyltransferase [Clostridium symbiosum
          WAL-14673]
          Length = 303

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   + ++  + ++P    F DI  +  
Sbjct: 4  LTHFSLFSGIGGIDLAAEAA----GFTTVCQCEWADFPMEVLKKHWPQVPKFKDITTVTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 60 EAFFEKTGRETTTLISGGFPCQPFSSAG 87


>gi|167462714|ref|ZP_02327803.1| possible DNA (cytosine-5-)-methyltransferase [Paenibacillus
          larvae subsp. larvae BRL-230010]
 gi|322382689|ref|ZP_08056545.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321153341|gb|EFX45773.1| DNA-methyltransferase-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 260

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGGI L          +E     E   +  K  + ++PNT I+ D+  +  
Sbjct: 1  MKKLSLFSGIGGIDL----AAKWAGIETVAFCEKEHFPQKVLRRHWPNTPIYDDVCTLTR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          + +            D++ AG+PCQ  S AG
Sbjct: 57 EVLERDGIIGTGRTIDLISAGYPCQGESYAG 87


>gi|42783651|ref|NP_980898.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
 gi|42739580|gb|AAS43506.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
          Length = 362

 Score = 86.0 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +     F G GG+ + + +       +   S E+ P   +T + N PN  ++ GDI    
Sbjct: 1  MNCISFFAGAGGLDMGIHKA----GFDVRVSVELEPVYCETLRTNHPNWNVVEGDIMTYT 56

Query: 61 TQDI--------PDHDVLLAGFPCQPFSQAG 83
           + +         + D+++ G PCQ FS AG
Sbjct: 57 PEQVLEQADLQEGEVDLMIGGSPCQSFSTAG 87


>gi|262192113|ref|ZP_06050275.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
 gi|262032024|gb|EEY50600.1| DNA-cytosine methyltransferase [Vibrio cholerae CT 5369-93]
          Length = 393

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 22/97 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLI------ 52
          +K  DLF G GG  L    +  H  V    + E +  +  TY+ NF       I      
Sbjct: 3  IKAIDLFAGAGGFTL----SAIHAGVSVLAAIEFDEAAANTYKENFIKAGKHNIDLRAGK 58

Query: 53 -FGDIAKIKTQDIPD--------HDVLLAGFPCQPFS 80
           FGDI  +   ++ D         D++L G PCQ FS
Sbjct: 59 DFGDINNVDPLELRDSLGLKKGELDLILGGPPCQGFS 95


>gi|239624264|ref|ZP_04667295.1| DNA-cytosine methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520650|gb|EEQ60516.1| DNA-cytosine methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 470

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
           LF GIGG             +   ++SE+ P ++   + + P  +  GDI K+  + +P 
Sbjct: 45  LFDGIGGFPY----AALFYGIRPVWASEVLPTAISVTKRHIPEMVHVGDITKLDGRKLPP 100

Query: 67  HDVLLAGFPCQPFSQAG 83
            D++  G PCQ  S +G
Sbjct: 101 VDIITFGSPCQGLSISG 117


>gi|319782483|ref|YP_004141959.1| DNA-cytosine methyltransferase [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317168371|gb|ADV11909.1| DNA-cytosine methyltransferase [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 368

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 17/92 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
          +   DLF G GG  L          +    + E N  +  TY+ NF        L   DI
Sbjct: 1  MNCIDLFAGAGGFSLAARNA----GLTIKLAVEHNKSAASTYRKNFAALEPKLVLRDEDI 56

Query: 57 AKIKTQDI--------PDHDVLLAGFPCQPFS 80
            +    +        P  D+LL G PCQ FS
Sbjct: 57 RTLSPVKLAREIFGRNPSCDLLLGGPPCQGFS 88


>gi|188581100|ref|YP_001924545.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
 gi|179344598|gb|ACB80010.1| DNA-cytosine methyltransferase [Methylobacterium populi BJ001]
          Length = 446

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   ++EI+P     ++ NFPN  +    +  +   +
Sbjct: 7  IDLFSGAGGLSLGFEQA----GFDVRAAAEIDPVHAAVHKFNFPNCAVLARSVVGLTAAE 62

Query: 64 IPD---------HDVLLAGFPCQPFSQAG 83
          I +          DV+  G PCQ FS  G
Sbjct: 63 IREAAALGPSDRVDVVFGGPPCQGFSMIG 91


>gi|86360841|ref|YP_472728.1| DNA (cytosine-5-)-methyltransferase protein [Rhizobium etli CFN 42]
 gi|86284943|gb|ABC94001.1| probable DNA (cytosine-5-)-methyltransferase protein [Rhizobium
           etli CFN 42]
          Length = 504

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI-AKIKT 61
           ++ DLF G GGI L  +        E   + E +P + +++  NF +      I   I  
Sbjct: 22  RVLDLFSGCGGISLGFQSA----GFEIVAAVENDPDAARSHGLNFHHGEDRHSIPRNITV 77

Query: 62  QD-------------IPDHDVLLAGFPCQPFSQAG 83
                              DV++ G PCQ F++ G
Sbjct: 78  TSPAALATALGLGAAASAFDVIVGGPPCQAFARVG 112


>gi|86747598|ref|YP_484094.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86570626|gb|ABD05183.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 390

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGG+ L L +  +    E    SEI   +    +  F      GD+A + +
Sbjct: 1  MKIAGLFAGIGGLELGLHRAGH----ETVILSEIWQPAGAVLEHRFKGAPNVGDVATLTS 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P + +++ AGFPCQ  SQAG
Sbjct: 57 --LPSEVELMTAGFPCQDLSQAG 77


>gi|225386628|ref|ZP_03756392.1| hypothetical protein CLOSTASPAR_00376 [Clostridium asparagiforme
          DSM 15981]
 gi|225047326|gb|EEG57572.1| hypothetical protein CLOSTASPAR_00376 [Clostridium asparagiforme
          DSM 15981]
          Length = 340

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGG+ L  E        E     E   +      A +P+   F DI     
Sbjct: 4  LTHVSLFSGIGGLDLAAEAA----GFETVCQCEWADFPHSVLSARWPDVPRFRDITTFTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            V+  GFPCQPFS AG
Sbjct: 60 EAFFEKTGLETVTVISGGFPCQPFSTAG 87


>gi|46019826|emb|CAE52348.1| putative cytosine-specific methyltransferase [Streptococcus
          thermophilus]
          Length = 365

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 19/94 (20%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----------FPNT 50
            + DLF G GG+    +Q             + +  ++KTY+ N           F   
Sbjct: 4  YNVVDLFSGAGGLSQGFKQA----GFNILMGVDFDDPALKTYKHNLKDSVALKADLFDEE 59

Query: 51 LIFGDI-AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              DI   +    I   DV++AG PCQ FS  G
Sbjct: 60 SAIKDIENNLNGNKI---DVIIAGPPCQGFSLTG 90


>gi|254460591|ref|ZP_05074007.1| C-5 cytosine-specific DNA methylase [Rhodobacterales bacterium
          HTCC2083]
 gi|206677180|gb|EDZ41667.1| C-5 cytosine-specific DNA methylase [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 384

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
          K  + F G G +   L         +C  +++I+P   +TY+ N+    L+ GD+A++  
Sbjct: 10 KFAEFFSGGGMVHAAL-----GAQWDCVLANDIDPMKCETYRQNWGGAHLLEGDVAELPE 64

Query: 62 QDI-PDHDVLLAGFPCQPFSQAG 83
            +    D++ A  PCQ FS AG
Sbjct: 65 GTLHQPLDLIWASSPCQDFSLAG 87


>gi|160943738|ref|ZP_02090969.1| hypothetical protein FAEPRAM212_01233 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444912|gb|EDP21915.1| hypothetical protein FAEPRAM212_01233 [Faecalibacterium
          prausnitzii M21/2]
          Length = 298

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPHFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|270265139|ref|ZP_06193402.1| hypothetical protein SOD_k01780 [Serratia odorifera 4Rx13]
 gi|270041073|gb|EFA14174.1| hypothetical protein SOD_k01780 [Serratia odorifera 4Rx13]
          Length = 350

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
              DLFCG GG+   L+        +     E+   +  TY+ N P+ +++  DI  + 
Sbjct: 3  FSAIDLFCGAGGLTCGLKDA----GFKVLAGVEVEAVAADTYRTNHPDHVLYEADIRTLD 58

Query: 61 TQDI--------PDHDVLLAGFPCQPFS 80
           Q I         D D+L    PCQ FS
Sbjct: 59 PQKIMQELHLQPGDLDLLAGCPPCQGFS 86


>gi|27733906|ref|NP_775697.1| putative C5-methyltransferase [Leuconostoc citreum]
 gi|27552370|emb|CAD38156.1| putative C5-methyltransferase [Leuconostoc citreum]
          Length = 403

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 28/107 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINPY 38
            +  LF G GG+ L LE                                   +S++    
Sbjct: 50  NVVSLFSGAGGLDLGLEMAGIDAVMGSKFTDNILNDKTEYNKNRKKSIFNIVYSNDNFKE 109

Query: 39  SVKTYQANFPNTLIFGD--IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + +TY   F   ++  D  I K+     P++D+++ GFPC  FS AG
Sbjct: 110 ANQTYTDMFSENIVKHDKDIRKVAI--FPNNDIMIGGFPCPGFSSAG 154


>gi|68249825|ref|YP_248937.1| modification methylase BepI-like [Haemophilus influenzae 86-028NP]
 gi|68058024|gb|AAX88277.1| modification methylase BepI-like [Haemophilus influenzae 86-028NP]
 gi|309973261|gb|ADO96462.1| DNA (cytosine-5-)-methyltransferase [Haemophilus influenzae R2846]
          Length = 407

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 40/122 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--------------------------HRNVECFFSSEI 35
           +K+  LF G GG+ +  E +F+                            + E  F+++I
Sbjct: 1   MKLISLFSGCGGMDIGFEGSFSCLKKSINEELHPEWISSTENEWVTVSPTSFETIFANDI 60

Query: 36  NPYSVK---TY----QANFPNTLIFGDIAKIKTQD------IP-DHDVLLAGFPCQPFSQ 81
            P +     +Y    +AN         I  +  ++       P D D+L  GFPCQ FS 
Sbjct: 61  KPDAKAAWVSYFLDQKANANEIYHLESIVDLVKKERETHNIFPKDIDILTGGFPCQDFSV 120

Query: 82  AG 83
           AG
Sbjct: 121 AG 122


>gi|254475144|ref|ZP_05088530.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
 gi|214029387|gb|EEB70222.1| DNA-cytosine methyltransferase [Ruegeria sp. R11]
          Length = 324

 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   +L  G GG  L LE+       E     EI+ +   T + N P   ++  D+ K 
Sbjct: 1  MLTSVELCAGAGGQALGLEKA----GFEHTALVEIDKHCCATLRHNRPKWNVLEEDVRKF 56

Query: 60 K--TQDIPDHDVLLAGFPCQPFSQAG 83
          K         D+L  G PC PFS AG
Sbjct: 57 KDVADSYHGIDLLAGGLPCPPFSVAG 82


>gi|157112484|ref|XP_001657555.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
 gi|108878059|gb|EAT42284.1| DNA (cytosine-5)-methyltransferase [Aedes aegypti]
          Length = 344

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQ 62
          + +LF GIGG+   +E++      +   + +INP +   Y  NF  N     +I  +   
Sbjct: 17 VLELFSGIGGMHFAIERSGKR--YKVVSAIDINPVANAIYNHNFGANKASNSNILSLTPD 74

Query: 63 DIPD--HDVLLAGFPCQPFSQAG 83
           I     +V+L   PCQPFS+ G
Sbjct: 75 RIQKLGVNVILMSPPCQPFSRNG 97


>gi|87310990|ref|ZP_01093115.1| DNA-cytosine methyltransferase [Blastopirellula marina DSM 3645]
 gi|87286280|gb|EAQ78189.1| DNA-cytosine methyltransferase [Blastopirellula marina DSM 3645]
          Length = 385

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIK 60
             + F GIG +RL LE+       E  F+++I+    + Y+A+F        GD+ ++ 
Sbjct: 8  TFAEFFAGIGLVRLGLERA----GWEVRFANDIDAAKHRQYEAHFGADEAFALGDVHQLD 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             IPD  +  A FPC   S AG
Sbjct: 64 AAAIPDVTLATASFPCTDLSLAG 86


>gi|317057160|ref|YP_004105627.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315449429|gb|ADU22993.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 407

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+             E++  +  T + N P   +I  DIA I 
Sbjct: 74  FSTIELFAGAGGLALGVEKA----GFITLGLVEVDKDASDTLRRNRPEWRVINDDIANIS 129

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ D+        D+L  G PCQ FS AG
Sbjct: 130 CLDLQDYFGLKKGELDLLSGGAPCQSFSYAG 160


>gi|50949214|emb|CAF31654.1| putative C5-methyltransferase [Cloning vector pGID052]
          Length = 307

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 28/107 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINPY 38
            +  LF G GG+ L LE                                   +S++    
Sbjct: 50  NVVSLFSGAGGLDLGLEMAGIDAVMGSKFTDNILNDKTEYNKNRKKSIFNIVYSNDNFKE 109

Query: 39  SVKTYQANFPNTLIFGD--IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + +TY   F   ++  D  I K+     P++D+++ GFPC  FS AG
Sbjct: 110 ANQTYTDMFSENIVKHDKDIRKVAI--FPNNDIMIGGFPCPGFSSAG 154


>gi|325270514|ref|ZP_08137114.1| modification methylase HindV [Prevotella multiformis DSM 16608]
 gi|324987090|gb|EGC19073.1| modification methylase HindV [Prevotella multiformis DSM 16608]
          Length = 320

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
          +K  DLFCG GG+ L  +Q           + +    +   Y+ NF + +   D+     
Sbjct: 1  MKAVDLFCGCGGLSLGFQQA----GYNVVAAYDNWDAATDVYRLNFSHPVHKADLMDAGK 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
           ++ I  +  ++++ G PCQ +S AG
Sbjct: 57 ASESIARYAPEIIIGGPPCQDYSSAG 82


>gi|237742048|ref|ZP_04572529.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429696|gb|EEO39908.1| site-specific DNA-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 440

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIF-GD 55
            DLFCG GG+   + Q          FS+EI+  + +TY+            NT +   D
Sbjct: 13  IDLFCGAGGMSEGILQA----GFHIIFSNEISKDASETYRKRHEQLGLEQGKNTWLEVAD 68

Query: 56  IAKI-------KTQDIPDH--------DVLLAGFPCQPFSQAG 83
           I  I       K  ++ D         D +  G PCQ FS+AG
Sbjct: 69  IKNITGTYIKKKISELKDFKENKNIEIDAIFGGPPCQGFSRAG 111


>gi|225164697|ref|ZP_03726934.1| DNA-cytosine methyltransferase [Opitutaceae bacterium TAV2]
 gi|224800687|gb|EEG19046.1| DNA-cytosine methyltransferase [Opitutaceae bacterium TAV2]
          Length = 372

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            + ++  G GG  L L Q           + EI+  + KT + N P+  +   D+ +I+
Sbjct: 5  FSVFEICAGAGGQALGLHQA----GFASAGAVEIDSDACKTLRLNRPDWNVFECDVREIR 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +D    D+L  G PC PFS AG
Sbjct: 61 GRDFAGVDLLAGGVPCPPFSTAG 83


>gi|266624606|ref|ZP_06117541.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288863534|gb|EFC95832.1| DNA (cytosine-5-)-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 434

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          LF GIGG             +   ++SE+ P ++   + + P  +  GDI K+  + +P 
Sbjct: 9  LFDGIGGFPY----AALFYGIRPVWASEVLPTAISVTKRHIPEMVHVGDITKLDGRKLPP 64

Query: 67 HDVLLAGFPCQPFSQAG 83
           D++  G PCQ  S +G
Sbjct: 65 VDIITFGSPCQGLSISG 81


>gi|295691449|ref|YP_003595142.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295433352|gb|ADG12524.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 374

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKI 59
             + F G G  R+ L          C F+++ +P    TY+ANF         GD+  +
Sbjct: 8  TFLEFFAGGGMARIGL-----GNGWTCAFANDFDPVKAATYRANFGADEGHFQQGDVFAL 62

Query: 60 KTQDIPDHDVLLAGFPCQPFS 80
            + +P  D+  A  PCQ FS
Sbjct: 63 SAETLPTADLAWASSPCQDFS 83


>gi|228917967|ref|NP_142059.2| modification methylase [Pyrococcus horikoshii OT3]
          Length = 312

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G GG  L               + E      +TY  NFP   ++  DI  +  +
Sbjct: 12 VIDLFAGAGGFSLGF----KLSGFRIVSAIESFRPKAETYSINFPEAKVVVRDIKAVNPR 67

Query: 63 DI-PDHDVLLAGFPCQPFS 80
          +I    DV++ G PC+PF+
Sbjct: 68 EIAEKVDVIIGGPPCEPFT 86


>gi|225026529|ref|ZP_03715721.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
 gi|224956143|gb|EEG37352.1| hypothetical protein EUBHAL_00778 [Eubacterium hallii DSM 3353]
          Length = 461

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 3   KITDLFCGIGGIRLDL------EQTFNHRNVECFFSSEINP------YSVKTYQANFPNT 50
            + +LF G+GG R  L      E        +  + ++  P      Y+   Y   F   
Sbjct: 4   TVCELFAGVGGFRCGLNNIKTAEDYGKEEKWDTVWFNQWEPSEKTTQYAHDCYVYRFGPR 63

Query: 51  LIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           L          +I  +    IPD ++L+ GFPCQ +S A
Sbjct: 64  LDINGEDTTNYNIEDVDKAKIPDFNLLVGGFPCQDYSVA 102


>gi|229061562|ref|ZP_04198906.1| C5 methyltransferase alpha subunit [Bacillus cereus AH603]
 gi|228717796|gb|EEL69446.1| C5 methyltransferase alpha subunit [Bacillus cereus AH603]
          Length = 353

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 16 LDLEQTFNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKIKTQDIP----DHDV 69
          + +EQ  +    +C    E + ++ K+Y+   N        DI  +   D+       DV
Sbjct: 1  MGMEQAGH----KCLGYVEKDKFARKSYEAIHNTKGEWTAHDITTVTNDDLRLLRGTVDV 56

Query: 70 LLAGFPCQPFSQAG 83
          +  GFPCQ FS AG
Sbjct: 57 ICGGFPCQAFSIAG 70


>gi|254876424|ref|ZP_05249134.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842445|gb|EET20859.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 458

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 37/115 (32%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--- 57
           M+K  DLF G GG+ L           +  F+ E +P + +T+  NF    I  +I    
Sbjct: 1   MMKYIDLFAGCGGLSLGF----KSEGFDLLFAVEKSPMAAETFYHNFIEK-INDNIEWSK 55

Query: 58  --------KIKTQ---------------------DIPDHDVLLAGFPCQPFSQAG 83
                   ++ ++                      I + D+++ G PCQ FS AG
Sbjct: 56  YLNKSIEEQLDSKLFVGETLTLLEKPQLLKKLKTKIGELDLIVGGPPCQGFSLAG 110


>gi|268607976|ref|ZP_06141707.1| cytosine-specific DNA-methyltransferase Sau96I [Ruminococcus
           flavefaciens FD-1]
          Length = 407

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+             E++  +  T + N P   +I  DIA + 
Sbjct: 74  FSTIELFAGAGGLALGVEKA----GFNTLGLVEVDKDASDTLRRNRPEWRVINDDIANVS 129

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ ++        D+L  G PCQ FS AG
Sbjct: 130 CLDLQEYFGLKQGELDLLSGGAPCQSFSYAG 160


>gi|281491831|ref|YP_003353811.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
 gi|281375542|gb|ADA65048.1| C-5 cytosine-specific DNA methylase [Lactococcus lactis subsp.
          lactis KF147]
          Length = 347

 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L + DLF G GG+    E        +     + +  +++T++ N  N   + GDI +  
Sbjct: 5  LSVIDLFSGAGGLSYGFELA----GYDILLGIDNDFDALRTFEKNHKNSKTLEGDITQFT 60

Query: 61 -TQDIP------DHDVLLAGFPCQPFSQAG 83
            +DI         D+++ G PCQ  S +G
Sbjct: 61 YEKDIKPLINDQKIDIIVGGPPCQGMSLSG 90


>gi|145218883|ref|YP_001129592.1| DNA-cytosine methyltransferase [Prosthecochloris vibrioformis DSM
          265]
 gi|145205047|gb|ABP36090.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM
          265]
          Length = 377

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L   +LFCG GG+ + L +           ++EI P    T+  N P T +   DI  I 
Sbjct: 5  LNAVELFCGAGGLSIGLSRA----GFHIALANEIEPDFAATFSLNHPETKMLNEDIHDID 60

Query: 61 TQ------DIPDHDVLLAGFPCQPFSQAG 83
                   I D  ++  G PCQ FS  G
Sbjct: 61 FARESLKTGITDVTLVSGGPPCQGFSTVG 89


>gi|315230475|ref|YP_004070911.1| DNA-cytosine methyltransferase [Thermococcus barophilus MP]
 gi|315183503|gb|ADT83688.1| DNA-cytosine methyltransferase [Thermococcus barophilus MP]
          Length = 321

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M  I DLF G GG     ++       +   + E       TY+ NFP   ++  DI +I
Sbjct: 1  MYTIIDLFAGAGGFSRGFKEA----GFKILAAIENFAPKADTYKFNFPEVRMYVEDIKRI 56

Query: 60 KTQDI-PDH---DVLLAGFPCQPFSQA 82
           T D+  D    DV++ G PC+P++ A
Sbjct: 57 HTIDVMRDVGVPDVIIGGPPCEPYTAA 83


>gi|284161497|ref|YP_003400120.1| DNA-cytosine methyltransferase [Archaeoglobus profundus DSM 5631]
 gi|284011494|gb|ADB57447.1| DNA-cytosine methyltransferase [Archaeoglobus profundus DSM 5631]
          Length = 310

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          + + D+F G GG              E   + E      +TY+ NFP   +I  D+ +++
Sbjct: 1  MNVVDVFAGCGGFSRGF----KEEGFELVAAIENFKPVAETYKTNFPEVEVIVKDVKEVR 56

Query: 61 TQDIP----DHDVLLAGFPCQPFS 80
            D+     D DVL+   PC+PF+
Sbjct: 57 GFDVERICGDVDVLIGSPPCEPFT 80


>gi|110834520|ref|YP_693379.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
          borkumensis SK2]
 gi|110647631|emb|CAL17107.1| C-5 cytosine-specific DNA methylase family protein [Alcanivorax
          borkumensis SK2]
          Length = 308

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDI 64
           LF G GG    L Q       +   +++I PY+   Y ANFP T     D+ +I  Q  
Sbjct: 2  SLFTGCGGSDSGLHQA----GYDVLMANDILPYAKDFYLANFPETDYQVIDVREI--QSF 55

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P  DVL+  +PCQ FSQ G
Sbjct: 56 PSADVLVGCYPCQGFSQGG 74


>gi|312889577|ref|ZP_07749127.1| C-5 cytosine-specific DNA methylase [Mucilaginibacter paludis DSM
          18603]
 gi|311297925|gb|EFQ75044.1| C-5 cytosine-specific DNA methylase [Mucilaginibacter paludis DSM
          18603]
          Length = 79

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML    LF GIGG  +        +     FS E +P+  K  +  +P T  + DI +  
Sbjct: 1  MLTHASLFSGIGGFDM----AATWKGWYNIFSCEKDPFCRKILKFYWPQTEQYEDIHQFD 56

Query: 61 TQDIP-DHDVLLAGFPCQPFSQA 82
                  ++L  GFPCQPFS A
Sbjct: 57 ATPYRGSINILSGGFPCQPFSSA 79


>gi|303274236|ref|XP_003056440.1| cytosine-specific DNA methylase [Micromonas pusilla CCMP1545]
 gi|226462524|gb|EEH59816.1| cytosine-specific DNA methylase [Micromonas pusilla CCMP1545]
          Length = 1085

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGG+ L LE+  +    E     E +P+ V+  Q  FP   +  D+A+++ 
Sbjct: 1  MKTVSLFSGIGGLDLGLEEAGH----EVILQVENDPHCVQVLQRQFPGKALARDVAEVR- 55

Query: 62 QDIP-DHDVLLAGFPCQPFS 80
           D+P + ++L AGFPC   S
Sbjct: 56 -DLPEETELLAAGFPCPDVS 74


>gi|52788777|gb|AAU87368.1| MnlI m5C-methyltransferase [Moraxella nonliquefaciens]
          Length = 351

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK-- 58
          + I DLFCG GG+    EQ             + N  ++ TYQ N  N+ ++ GD+    
Sbjct: 1  MNILDLFCGAGGLSYGFEQA----GFNAVLGVDFNEKALDTYQKNHKNSQILCGDLTSCE 56

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
               +K     +   +L G PCQ FS  G
Sbjct: 57 LKDEIVKIAKTNNVRAVLGGPPCQGFSLKG 86


>gi|332655271|ref|ZP_08421011.1| putative type II DNA modification methyltransferase
          [Ruminococcaceae bacterium D16]
 gi|332515776|gb|EGJ45386.1| putative type II DNA modification methyltransferase
          [Ruminococcaceae bacterium D16]
          Length = 298

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|3746579|gb|AAC64006.1| cytosine methyltransferase [Paramecium bursaria Chlorella virus
          NYs1]
          Length = 362

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L + F    VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGL-RGF----VEPVAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDI-PDHDVLLAGFPCQPFSQAG 83
          +D     D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|325286536|ref|YP_004262326.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
 gi|324321990|gb|ADY29455.1| DNA-cytosine methyltransferase [Cellulophaga lytica DSM 7489]
          Length = 414

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--I 59
           L   DLFCG GG+    E              +    +  TY+ NF +  I GDI +  +
Sbjct: 96  LTSADLFCGAGGMAKGFEMA----GFTQVGGLDWFKEAGMTYRENFEHPHILGDITERSV 151

Query: 60  KTQDIPDH---------DVLLAGFPCQPFSQAG 83
           K + I             VL  GFPCQ FS +G
Sbjct: 152 KDKFINTVKSSLNGKPLTVLSGGFPCQGFSMSG 184


>gi|23428398|gb|AAL15430.1| DNA methyltransferase A [Moraxella nonliquefaciens]
          Length = 351

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK-- 58
          + I DLFCG GG+    EQ             + N  ++ TYQ N  N+ ++ GD+    
Sbjct: 1  MNILDLFCGAGGLSYGFEQA----GFNAVLGVDFNEKALDTYQKNHKNSQILCGDLTSCE 56

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
               +K     +   +L G PCQ FS  G
Sbjct: 57 LKDEIVKIAKTNNVRAVLGGPPCQGFSLKG 86


>gi|118431236|ref|NP_147563.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
 gi|116062559|dbj|BAA79854.2| DNA (cytosine-5-)-methyltransferase [Aeropyrum pernix K1]
          Length = 469

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 21/95 (22%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----------------P 48
            LF G GG+ L   Q+         F++EI   +  TY  N                 P
Sbjct: 7  ISLFSGAGGLDLGFVQSGR---FRIVFANEILLPAAVTYSRNLGLRLEVCGDEPRVEAQP 63

Query: 49 NTLIFGDIAKIKTQDIP--DHDVLLAGFPCQPFSQ 81
           T++  D+AK+    +   D DV++ G PCQ FS 
Sbjct: 64 GTIMACDVAKLDFTGLSGVDADVIIGGPPCQDFSI 98


>gi|294667855|ref|ZP_06733064.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
 gi|292602358|gb|EFF45800.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
          Length = 410

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L   DLF G GG+   L +          +++EI+P   +TY  N P T +   DI K+ 
Sbjct: 11 LTSLDLFAGAGGLSEGLREA----GFTSLYANEISPRYAQTYAVNHPGTQVDSQDIRKVD 66

Query: 61 TQDIP--------DHDVLLAGFPCQPFSQ 81
           + +         + D++  G PCQ FS 
Sbjct: 67 ARKVRKLLGLKRGELDLIAGGPPCQGFSI 95


>gi|83944557|ref|ZP_00957008.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
 gi|83844594|gb|EAP82480.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
          Length = 373

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +   + F G G +R  L          C F+++++P   + Y+ N+  + L+  DIA + 
Sbjct: 1  MTFYEFFAGGGMVRAGL-----GVRWRCLFANDVSPKKARIYRRNWGGDALVLADIAALT 55

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
          + ++PD  D++   FPCQ  S AG
Sbjct: 56 SAELPDVPDLVWGSFPCQDLSVAG 79


>gi|108797795|ref|YP_637992.1| DNA-cytosine methyltransferase [Mycobacterium sp. MCS]
 gi|119866887|ref|YP_936839.1| DNA-cytosine methyltransferase [Mycobacterium sp. KMS]
 gi|108768214|gb|ABG06936.1| DNA-cytosine methyltransferase [Mycobacterium sp. MCS]
 gi|119692976|gb|ABL90049.1| DNA-cytosine methyltransferase [Mycobacterium sp. KMS]
          Length = 385

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF GIGG+ + L ++      E     EI+P +      + P+  +  D+ +++  
Sbjct: 4  TVAGLFAGIGGLEVGLSRS----GWETTLLCEIDPAARAVLSHHMPDVELQDDVRRLRA- 58

Query: 63 DIP-DHDVLLAGFPCQPFSQAG 83
           +P   D+L AGFPCQ  SQAG
Sbjct: 59 -LPQSLDLLAAGFPCQDLSQAG 79


>gi|186683211|ref|YP_001866407.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594714|gb|AAK68647.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
          73102]
 gi|186465663|gb|ACC81464.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score = 84.8 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   S EI+P    T++ NFP   ++   +     ++
Sbjct: 13 VDLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCATHEFNFPYCSVLCQSVVDTTGEE 68

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I         + DV++ G PCQ FS  G
Sbjct: 69 IRSRSKIGDREIDVVICGSPCQGFSLIG 96


>gi|26990694|ref|NP_746119.1| DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
 gi|24985686|gb|AAN69583.1|AE016592_2 DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
          Length = 348

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
           K+  LFCG GG+ L           +  F+++ + Y+V+TY  N P       D+ +   
Sbjct: 24  KLVSLFCGAGGLDLGFIDA----GFDVVFAADHDRYAVETYNHNHPGQRASKVDLLETSP 79

Query: 62  QDIPDHDVL-----------LAGFPCQPFSQA 82
           +++    VL           + G PCQ FS+A
Sbjct: 80  EELYKRSVLEPGFEGAIHGIIGGPPCQGFSRA 111


>gi|262171500|ref|ZP_06039178.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
 gi|261892576|gb|EEY38562.1| modification methylase PspPI (Cytosine-specific methyltransferase
           PspPI) (M.PspPI) [Vibrio mimicus MB-451]
          Length = 416

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 22  FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPD-HDVLLAGFPCQPF 79
                ++  F +E++ Y+ +T + N P   ++ GDI+KI    I +  D+L  GFPCQ F
Sbjct: 94  MEQAGLQSIFLNELDKYACETLRHNRPEWNVVEGDISKIDFTTITEPVDILTGGFPCQAF 153

Query: 80  SQAG 83
           S AG
Sbjct: 154 SYAG 157


>gi|171184904|ref|YP_001793823.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
 gi|170934116|gb|ACB39377.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
          Length = 462

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 18/95 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------------- 46
            +  LF G GG+ L   Q+         F++++   ++ TY  N               
Sbjct: 4  YTVVSLFSGAGGLDLGFVQSGR---YRMLFANDVLSSALTTYAKNLDLKLELCSSRRTEA 60

Query: 47 FPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
           P   +  D+A++    + D DV++ G PCQ FS 
Sbjct: 61 RPGVALVCDVAEVDFAPLGDVDVIVGGPPCQDFSI 95


>gi|51892448|ref|YP_075139.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856137|dbj|BAD40295.1| site-specific DNA-methyltransferase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 486

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 21/98 (21%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFG----DI 56
           ++ DLF G GG+ L  ++       E   + E++P++ +++  NF   +         DI
Sbjct: 14  RVLDLFAGCGGLSLGFQRA----GFEILAAVEMDPHAARSHAINFHPGDRFDLHAKPRDI 69

Query: 57  AKIKTQDI-----PD------HDVLLAGFPCQPFSQAG 83
           ++ +   +     P        D+++ G PCQ +++ G
Sbjct: 70  SQEQPDQVLGELYPGERAEDLVDIIIGGPPCQAYARVG 107


>gi|228989002|ref|ZP_04149032.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228770724|gb|EEM19259.1| DNA-cytosine methyltransferase [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 445

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          +  +F G GG+ +         +     + E++P +  TY+ N P T ++  DI  +K  
Sbjct: 15 VIGIFAGCGGLDMGF----FECDFNVQLAIELDPDACNTYKKNHPETEVWNRDIKTVKGD 70

Query: 63 DIPDHD-----VLLAGFPCQPFSQ 81
          +I         +LL G PCQ FS 
Sbjct: 71 EIRKQVGNKPLILLGGSPCQSFSI 94


>gi|283852745|ref|ZP_06370009.1| C-5 cytosine-specific DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283571826|gb|EFC19822.1| C-5 cytosine-specific DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 264

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G G   +  E           +  E +P++    +  +P   +F D+  I  Q+
Sbjct: 14 VGSLFSGAGLGDIAAEAIGLSH----AWFCECDPFARSILERRWPGVPVFHDVRDIHAQN 69

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+++ GFPCQ  S AG
Sbjct: 70 AKRVDIVIGGFPCQDISCAG 89


>gi|313677760|ref|YP_004055756.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312944458|gb|ADR23648.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
            + DLFCG GG+     +     +       +    +++T+  N  N+  I  D+  + 
Sbjct: 5  YNVIDLFCGCGGLSQGFIEA----DYNVILGIDHWKDAIETFNYNHKNSKGIVADLLNLD 60

Query: 61 TQDI------PDHDVLLAGFPCQPFSQAG 83
           Q+I       + D+++ G PCQ FS AG
Sbjct: 61 PQEIKTRYAIENVDLIVGGPPCQGFSIAG 89


>gi|148555377|ref|YP_001262959.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
 gi|148500567|gb|ABQ68821.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
          Length = 412

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK   LF GIGG+    E        +   + EI+  S +    N    +I  DI  + T
Sbjct: 9  LKAISLFTGIGGLDFGFEAA----GFDTAVALEIDKASCRVLGDNRDWPIIGEDIHDVGT 64

Query: 62 Q--------DIPDHDVLLAGFPCQPFSQAG 83
                   ++ + D+L+ G PCQPFS++G
Sbjct: 65 PRLLQAANLEVGEADILIGGPPCQPFSKSG 94


>gi|325969823|ref|YP_004246015.1| DNA-cytosine methyltransferase [Vulcanisaeta moutnovskia 768-28]
 gi|323709026|gb|ADY02513.1| DNA-cytosine methyltransferase [Vulcanisaeta moutnovskia 768-28]
          Length = 329

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G GG              +     EI+  + +TY  NFP+  ++  DI  I+ +
Sbjct: 5  VIDLFAGAGGFSRGFLDA----GFDVVLGIEIDINAARTYSYNFPDAVMLVDDIKNIRGE 60

Query: 63 DIPDH-----DVLLAGFPCQPFSQ 81
          D+  +     DV++ G PC+ F++
Sbjct: 61 DVIKYIGDKPDVVIGGSPCEAFTE 84


>gi|91213886|ref|YP_543872.1| hypothetical protein UTI89_C4938 [Escherichia coli UTI89]
 gi|110644679|ref|YP_672409.1| modification methylase [Escherichia coli 536]
 gi|191170832|ref|ZP_03032384.1| modification methylase HgiDII [Escherichia coli F11]
 gi|300974517|ref|ZP_07172633.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|91075460|gb|ABE10341.1| hypothetical protein UTI89_C4938 [Escherichia coli UTI89]
 gi|110346271|gb|ABG72508.1| modification methylase [Escherichia coli 536]
 gi|190909056|gb|EDV68643.1| modification methylase HgiDII [Escherichia coli F11]
 gi|300308872|gb|EFJ63392.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|307629406|gb|ADN73710.1| DNA-cytosine methyltransferase [Escherichia coli UM146]
 gi|315290903|gb|EFU50272.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|324010993|gb|EGB80212.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 60-1]
          Length = 348

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M+ + D FCG GG    L Q       +     +I+  + +T++ANFP+   I  DI KI
Sbjct: 1  MI-VIDFFCGCGGASEGLRQA----GFDIELGLDIDQQASETFKANFPDAKFIQDDIRKI 55

Query: 60 KTQDIPD-HDV-------LLAGFPCQPFSQ 81
          + QDI D  D+       L A  PCQPFSQ
Sbjct: 56 EPQDISDIIDIKAKRPLLLSACAPCQPFSQ 85


>gi|257440558|ref|ZP_05616313.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
 gi|257196997|gb|EEU95281.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
          Length = 297

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|240143270|ref|ZP_04741871.1| modification methylase BspRI [Roseburia intestinalis L1-82]
 gi|257204748|gb|EEV03033.1| modification methylase BspRI [Roseburia intestinalis L1-82]
          Length = 432

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 28/107 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINPY 38
            +  LF G GG+ L  E                           N+      + ++I   
Sbjct: 59  NLLSLFSGCGGLDLGFELAGLKAVMGEEVMEAAFADKKVFDENINNNVFNTIYVNDIFDE 118

Query: 39  SVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           + +TY  N    +     DI KIK  + P  D++L GFPC  FS+AG
Sbjct: 119 ARETYAQNAGKYIYMDKSDIRKIK--EFPKADIVLGGFPCPGFSEAG 163


>gi|254442311|ref|ZP_05055787.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
 gi|198256619|gb|EDY80927.1| DNA-cytosine methyltransferase superfamily [Verrucomicrobiae
          bacterium DG1235]
          Length = 338

 Score = 84.8 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 24 HRNVECFFSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQ 77
              EC   SEINP + +TY+        +   L  GD+ KI   D PD DV+L GFPCQ
Sbjct: 25 KLGGECVGYSEINPKAKRTYRMLHELDTLWEPQLDLGDLTKINPNDAPDFDVMLGGFPCQ 84

Query: 78 PFSQAG 83
           FS  G
Sbjct: 85 TFSIVG 90


>gi|328471744|gb|EGF42621.1| putative C-5 cytosine-specific DNA methylase [Vibrio
          parahaemolyticus 10329]
          Length = 392

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 19/95 (20%)

Query: 1  ML-KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIF 53
          ML K  DLF G GG  L      ++  +E   + E++  + +TYQ+N         +++ 
Sbjct: 1  MLHKAIDLFSGAGGFSL----AAHNLGLEIVAAIELDKTASQTYQSNLVERLGQKTSILN 56

Query: 54 GDIAKIKTQD--------IPDHDVLLAGFPCQPFS 80
           DI  I  ++        I +  ++L G PCQ FS
Sbjct: 57 EDILSIDPEELRKSLGINIGELSIILGGPPCQGFS 91


>gi|325695618|gb|EGD37518.1| modification methylase SinI [Streptococcus sanguinis SK150]
          Length = 471

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K    F G  G+ + +E       ++   + EIN  +  T   N     + GDI +   
Sbjct: 74  IKALSFFSGGMGLDIGMENA----GIKPLLACEINKEARATIVENNTEIGLIGDIWQCSK 129

Query: 62  QDI---------PDHDVLLAGFPCQPFSQAG 83
           ++I            DV+  G PCQ FS AG
Sbjct: 130 EEIYKYANLDKNTSIDVVFGGPPCQAFSTAG 160


>gi|9632187|ref|NP_049039.1| hypothetical protein PBCV1_A683L [Paramecium bursaria Chlorella
          virus 1]
 gi|2447129|gb|AAC96987.1| nonfunctional M.CviAV cytosine DNA methyltransferase [Paramecium
          bursaria Chlorella virus 1]
          Length = 367

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  +LF GI GI   L               EIN  + K  +  F +  +F D+ K   
Sbjct: 3  FRTLELFAGIAGISHGLRGIS-----TPVAFVEINEDAQKFLKTKFSDASVFNDVTKFTK 57

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           D P D D++ AGFPC  FS AG
Sbjct: 58 SDFPEDIDMITAGFPCTGFSIAG 80


>gi|54022198|ref|YP_116440.1| putative DNA cytosine methyltransferase [Nocardia farcinica IFM
          10152]
 gi|54013706|dbj|BAD55076.1| putative DNA cytosine methyltransferase [Nocardia farcinica IFM
          10152]
          Length = 382

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++  LF GIGG+ L L          C    EI+P +     A FP+T +  DI  ++  
Sbjct: 5  RMVGLFAGIGGLELGLAA----HGWTCELLCEIDPGAQAVLGARFPDTDLHADITALRA- 59

Query: 63 DIP-DHDVLLAGFPCQPFSQAG 83
           +P   +++ AGFPCQ  SQAG
Sbjct: 60 -VPAGTELVAAGFPCQDLSQAG 80


>gi|309790027|ref|ZP_07684601.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
 gi|308227882|gb|EFO81536.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides DG6]
          Length = 438

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-KTQD 63
            DLFCG GG+ L  E      N       +  P +V T++ NF +  I  DI +I   ++
Sbjct: 60  LDLFCGAGGMSLGFESG----NFFVAAGIDAEPAAVMTHKYNFLSKGIACDIREISDPRE 115

Query: 64  I------PDHDVLLAGFPCQPFSQAG 83
           +      P  DV++ G PCQ F++ G
Sbjct: 116 LLATLGLPRVDVIIGGPPCQGFARIG 141


>gi|167746050|ref|ZP_02418177.1| hypothetical protein ANACAC_00745 [Anaerostipes caccae DSM 14662]
 gi|167654565|gb|EDR98694.1| hypothetical protein ANACAC_00745 [Anaerostipes caccae DSM 14662]
          Length = 615

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +   ++SEI P+ ++      P    +GDI+K+  
Sbjct: 6  LTLGSLFDGSGGFPLG----GLISGITPLWASEIEPFPIRVTTKRLPQVKHYGDISKMNG 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+   D++  G PCQ  S AG
Sbjct: 62 ADLKPVDIITFGSPCQDMSIAG 83


>gi|157953073|ref|YP_001497965.1| hypothetical protein NY2A_B769R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155123300|gb|ABT15168.1| hypothetical protein NY2A_B769R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 362

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L + F    VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGL-RGF----VEPVAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDI-PDHDVLLAGFPCQPFSQAG 83
          +D     D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|160934346|ref|ZP_02081733.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
 gi|156867019|gb|EDO60391.1| hypothetical protein CLOLEP_03217 [Clostridium leptum DSM 753]
          Length = 433

 Score = 84.4 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+       +     E +  +  T + N PN  +I  DIA I 
Sbjct: 101 FSTIELFAGAGGLALGIEEA----GFDTIGLIEFDKAASDTLKCNRPNWRVINDDIANIS 156

Query: 61  TQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+ ++        D+L  G PCQ FS AG
Sbjct: 157 CLDLEEYFNIKKGELDLLSGGAPCQAFSYAG 187


>gi|228947350|ref|ZP_04109643.1| hypothetical protein bthur0007_34800 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228812349|gb|EEM58677.1| hypothetical protein bthur0007_34800 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 290

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 16 LDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDIPDHDVLLAG 73
          + +EQ  +    +C    E + ++ K+Y+A         + DI+ I  ++IP  D    G
Sbjct: 1  MGMEQAGH----KCLGYVEWDKFARKSYEAIHDTGEEWTWNDISTIDYRNIPKSDCWTFG 56

Query: 74 FPCQPFSQAG 83
          FPCQ  S  G
Sbjct: 57 FPCQDISIGG 66


>gi|224541047|ref|ZP_03681586.1| hypothetical protein CATMIT_00198 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526044|gb|EEF95149.1| hypothetical protein CATMIT_00198 [Catenibacterium mitsuokai DSM
           15897]
          Length = 418

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 21/102 (20%)

Query: 2   LKITDLFCGIGGIRLDL---------EQTFNHRNVECFFSSEINPY-----SVKTYQANF 47
           L + +LF G+GG R+ L         ++   +RN +  ++++  P      +   Y   F
Sbjct: 3   LTVVELFAGVGGFRVGLNDIKSFDENDKAIENRNWKFVWANQFEPSTKTQPAYNCYCTRF 62

Query: 48  PNTLIFG-DIAKI------KTQDIPDHDVLLAGFPCQPFSQA 82
                   DI +        T  IP+H +L+ GFPCQ +S A
Sbjct: 63  GEEHTSNTDIQEEVAHLDEDTDYIPNHSLLVGGFPCQDYSVA 104


>gi|213618692|ref|ZP_03372518.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 151

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFG-DIA 57
            +  DLF GIGGIR   E        +C F+SE N ++V+TY+AN+   P    F  DI 
Sbjct: 91  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIR 146

Query: 58  KIK 60
            I 
Sbjct: 147 DIT 149


>gi|325069024|ref|ZP_08127697.1| modification methylase XorII [Actinomyces oris K20]
          Length = 201

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +++ DLF G GG+        +        + E++P +  +Y+A FP T ++ G I    
Sbjct: 6  IRVLDLFAGAGGLTAGFHTASSR--FRSIAAVEMDPEAAASYRATFPKTEVYAGAIQDWL 63

Query: 61 TQ-DIP-DHDVLLAGFPCQPFSQAG 83
           +  IP   DV++ G PCQ FS  G
Sbjct: 64 AEGKIPTGVDVVVGGPPCQGFSTLG 88


>gi|282899425|ref|ZP_06307392.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
          CS-505]
 gi|281195689|gb|EFA70619.1| DNA-cytosine methyltransferase [Cylindrospermopsis raciborskii
          CS-505]
          Length = 384

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQD 63
           +LF G GG+   LE              E++  +  T   N+ + LI+  D+ K K ++
Sbjct: 9  LELFAGAGGLAKGLEMAKIKHKALI----ELDYNACLTLANNYNHQLIYNVDVRKFKFEE 64

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          + + D++  G PCQPFS  G
Sbjct: 65 VGEVDIIAGGPPCQPFSLGG 84


>gi|314055145|ref|YP_004063483.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
          virus 2]
 gi|313575036|emb|CBI70049.1| putative cytosine-specific methyltransferase [Ostreococcus tauri
          virus 2]
          Length = 349

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            LF G GG  L +        ++    SE+     +T++ NF N  LI GDI KI  +D
Sbjct: 7  LSLFSGCGGDTLGMTNA----GIDVVAYSELKTKFQETHELNFKNSKLIGGDINKITDED 62

Query: 64 IPD----HDVLLAGFPCQPFSQAG 83
                  D++  GFPCQ FS AG
Sbjct: 63 FEKLSGKIDIIFGGFPCQSFSNAG 86


>gi|225571372|ref|ZP_03780368.1| hypothetical protein CLOHYLEM_07470 [Clostridium hylemonae DSM
          15053]
 gi|225159848|gb|EEG72467.1| hypothetical protein CLOHYLEM_07470 [Clostridium hylemonae DSM
          15053]
          Length = 479

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FGDIAK 58
              DLF G GG+   L +           + EI+  +   Y+AN+ +  I     DI +
Sbjct: 4  YNAIDLFSGCGGMTSGLIKA----GFNVIAAVEIDKNAASAYRANYKSNKIKLFEKDIRQ 59

Query: 59 IKTQDIPD------HDVLLAGFPCQPFS 80
          + + DI +        +L    PCQ FS
Sbjct: 60 VSSMDIYELLEGDVLHLLAGCPPCQGFS 87


>gi|153955901|ref|YP_001396666.1| hypothetical protein CKL_3292 [Clostridium kluyveri DSM 555]
 gi|219856251|ref|YP_002473373.1| hypothetical protein CKR_2908 [Clostridium kluyveri NBRC 12016]
 gi|146348759|gb|EDK35295.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219569975|dbj|BAH07959.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 302

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E        +     E   Y  +  + ++P+   + D+  I  
Sbjct: 14 LTHFSLFTGIGGIDLAAEWA----GFKTVGQCEFADYPTRVLEKHWPDVERWKDVRSITV 69

Query: 62 QD-----IPDHDVLLAGFPCQPFSQAG 83
          +      I +  VL AGFPCQP S AG
Sbjct: 70 ESVRERGIQEVTVLSAGFPCQPHSVAG 96


>gi|295104078|emb|CBL01622.1| Site-specific DNA methylase [Faecalibacterium prausnitzii SL3/3]
          Length = 298

 Score = 84.4 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|547931|sp|P36216|MTC1_PBCVI RecName: Full=Modification methylase CviJI; Short=M.CviJI;
          AltName: Full=Cytosine-specific methyltransferase CviJI
 gi|323315|gb|AAA88826.1| cytosine methyltransferase [Paramecium bursaria Chlorella virus
          IL3A]
 gi|483782|gb|AAC55063.1| cytosine methyltransferase [Chlorella virus]
          Length = 367

 Score = 84.0 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +  +LF GI GI   L               EIN  + K  +  F +  +F D+ K   
Sbjct: 3  FRTLELFAGIAGISHGLRGIS-----TPVAFVEINEDAQKFLKTKFSDASVFNDVTKFTK 57

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
           D P D D++ AGFPC  FS AG
Sbjct: 58 SDFPEDIDMITAGFPCTGFSIAG 80


>gi|160945835|ref|ZP_02093061.1| hypothetical protein FAEPRAM212_03368 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443566|gb|EDP20571.1| hypothetical protein FAEPRAM212_03368 [Faecalibacterium
          prausnitzii M21/2]
          Length = 298

 Score = 84.0 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|255283692|ref|ZP_05348247.1| C-5 cytosine-specific DNA methylase family protein [Bryantella
           formatexigens DSM 14469]
 gi|255265757|gb|EET58962.1| C-5 cytosine-specific DNA methylase family protein [Bryantella
           formatexigens DSM 14469]
          Length = 461

 Score = 84.0 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 3   KITDLFCGIGGIRLDL------EQTFNHRNVECFFSSEINP------YSVKTYQANFPNT 50
            + +LF G+GG R  L      E        +  + S+  P      Y+   Y   F   
Sbjct: 4   TVCELFAGVGGFRCGLNNIRTAEDYGKEEKWDTVWFSQWEPAEKSTQYAHDCYVYRFGTR 63

Query: 51  LIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           L          +I  +    +PD ++L+ GFPCQ +S A
Sbjct: 64  LDKNGEDTTNYNIEDVDKTTLPDFNLLVGGFPCQDYSVA 102


>gi|256847840|ref|ZP_05553285.1| DNA-cytosine methyltransferase [Lactobacillus coleohominis
          101-4-CHN]
 gi|256715529|gb|EEU30505.1| DNA-cytosine methyltransferase [Lactobacillus coleohominis
          101-4-CHN]
          Length = 349

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANF----PNTLIFGD 55
           K+ +LFCG GG+ L  +        +    ++++ +  + +TY  N     P ++   D
Sbjct: 3  YKLGELFCGPGGLALGAKTADIGNGDQIVHAWANDFDKDTCETYIHNICPENPESVYCED 62

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + K     +   D L  GFPC  FS  G
Sbjct: 63 VRKFDLTQLTPIDGLAFGFPCNDFSVVG 90


>gi|257440380|ref|ZP_05616135.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
 gi|257197226|gb|EEU95510.1| type II DNA modification methyltransferase [Faecalibacterium
          prausnitzii A2-165]
          Length = 298

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS AG
Sbjct: 59 EAFFEKTGLRTVTLISGGFPCQPFSTAG 86


>gi|291557370|emb|CBL34487.1| Site-specific DNA methylase [Eubacterium siraeum V10Sc8a]
          Length = 361

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +      +   ++SEI    +   + +FP+ +  GDI K+  
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----GIRPAWASEIEKAPISITKRHFPDMVHLGDITKVDG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP   V+  G PCQ  S  G
Sbjct: 60 GKIPPVHVITFGSPCQNLSLIG 81


>gi|261420917|ref|YP_003254598.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC61]
 gi|319768595|ref|YP_004134095.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC52]
 gi|261377375|gb|ACX80116.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC61]
 gi|317113461|gb|ADU95952.1| DNA-cytosine methyltransferase [Geobacillus sp. Y412MC52]
          Length = 370

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQT------FNHRNVECFFSSEINPYSVKTYQANF---PNTL 51
          + +  +LF G GG+ L  +             +E  ++++ N  + +TY+ N    P+  
Sbjct: 2  IFRKGELFSGPGGLALGAKMARVVDADGEEFRIEHVWANDYNESACRTYRRNICGDPDDP 61

Query: 52 --IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            I  D+ ++  + +P  D L  GFPC  +S  G
Sbjct: 62 SVIACDVRELDIEQLPRIDALSFGFPCNDYSVVG 95


>gi|160881053|ref|YP_001560021.1| DNA-cytosine methyltransferase [Clostridium phytofermentans ISDg]
 gi|160429719|gb|ABX43282.1| DNA-cytosine methyltransferase [Clostridium phytofermentans ISDg]
          Length = 537

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD----IA 57
          +K+ D FCG GG      Q       +  F+ +    +V TY+AN P   +  D    I+
Sbjct: 1  MKVADFFCGAGGFSEGFRQA----GFDIVFAVDKWLPAVNTYKANKPMVNVIQDDVIRIS 56

Query: 58 KIKTQDI----PDHDVLLAGFPCQPFS 80
           +  ++     PD +V++   PC  FS
Sbjct: 57 NLPDEEFEKLVPDTEVIIGSPPCVAFS 83


>gi|86137701|ref|ZP_01056277.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
 gi|85825293|gb|EAQ45492.1| DNA modification methylase M.NGOI [Roseobacter sp. MED193]
          Length = 319

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA-- 57
          ML   +L  G GG  L LE+       +     EI+ +   T + N PN  ++  D+   
Sbjct: 1  MLTSVELCAGAGGQALGLERA----GFDHTALVEIDKHCCATLRHNRPNWNVLEEDLRLF 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          K         D+L  G PC PFS AG
Sbjct: 57 KDDASAYKGIDLLAGGLPCPPFSVAG 82


>gi|309789605|ref|ZP_07684186.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides
          DG6]
 gi|308228341|gb|EFO81988.1| C-5 cytosine-specific DNA methylase [Oscillochloris trichoides
          DG6]
          Length = 342

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)

Query: 2  LKITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          + + DLF G GG+ L  E Q             E +P + +TY  N  +        ++ 
Sbjct: 21 ISVLDLFAGCGGLALGFEAQGLKTHGF------EKDPDAAQTYCNNLGSPCEH---VELS 71

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
             + P  DV++ G PCQPFS  G
Sbjct: 72 IDTVYPQADVVIGGPPCQPFSVGG 95


>gi|312200730|ref|YP_004020791.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
 gi|311232066|gb|ADP84921.1| DNA-cytosine methyltransferase [Frankia sp. EuI1c]
          Length = 464

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGD-----I 56
           K+ DLFCG GG+     +       E   +++ +P +  TY+ NF    ++ GD     +
Sbjct: 34  KLVDLFCGAGGLSEGFRR----VGFEVVAAADHDPDACATYERNFARAEVLCGDLRLPAL 89

Query: 57  AKIKTQDIPDHDVLLAGFPCQPFSQ 81
            +         D+++ G PCQ +SQ
Sbjct: 90  RERLVDLAAGADMIVGGPPCQAYSQ 114


>gi|304383358|ref|ZP_07365824.1| site-specific DNA-methyltransferase [Prevotella marshii DSM
          16973]
 gi|304335526|gb|EFM01790.1| site-specific DNA-methyltransferase [Prevotella marshii DSM
          16973]
          Length = 478

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 1  MLKIT---DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          M +      LF GIG      E        +  F  EI+ +        +PN++ + +I 
Sbjct: 1  MKRFIMHASLFSGIG----APELAAFWLGWQNVFHCEISEFCNTILNYWYPNSIGYENIK 56

Query: 58 KIKTQDI-PDHDVLLAGFPCQPFSQAG 83
          +          DVL  GFPCQPFS AG
Sbjct: 57 QADFSKWQGKIDVLTGGFPCQPFSSAG 83


>gi|254416651|ref|ZP_05030402.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176617|gb|EDX71630.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 428

 Score = 84.0 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 27/102 (26%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
            DLF G+GG  L +EQ       +   + E +P     Y+ NFP   ++  D+ ++    
Sbjct: 11  IDLFAGVGGFSLGIEQA----GFDVAIAVEKDPIHAAVYKFNFPQTHVLCADVTELTGTH 66

Query: 64  IP----------------------DHDVLLAGFPCQPFSQAG 83
           I                       D +++  G PCQ FS  G
Sbjct: 67  IQKALRNWCDRQKRPVRVSDRDRMDINLVFGGPPCQGFSVMG 108


>gi|254467362|ref|ZP_05080773.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206688270|gb|EDZ48752.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 319

 Score = 84.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   +L  G GG  L LE        +     EI+ +   T + N P   ++  D+ K 
Sbjct: 1  MLTSVELCAGAGGQALGLEAA----GFDHTALVEIDKHCCATLRHNRPAWNVLEEDVRKF 56

Query: 60 K--TQDIPDHDVLLAGFPCQPFSQAG 83
          K    D    D+L  G PC PFS AG
Sbjct: 57 KEVAGDYKGIDLLAGGLPCPPFSVAG 82


>gi|290343528|ref|YP_003494895.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
 gi|260160943|emb|CAY39643.1| hypothetical protein OTV1_055 [Ostreococcus tauri virus 1]
          Length = 351

 Score = 84.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
            LF G GG  L +        V+    SE+     +T++ NF N  LI GDI KI  +D
Sbjct: 9  LSLFSGCGGDTLGMVNA----GVDVVAYSELKTKFQETHELNFKNSKLIGGDINKITDED 64

Query: 64 IPD----HDVLLAGFPCQPFSQAG 83
                  D++  GFPCQ FS AG
Sbjct: 65 FEKLSGKIDIIFGGFPCQSFSNAG 88


>gi|144952808|gb|ABP04058.1| DNA methyltransferase 2 [Macrobrachium rosenbergii]
          Length = 396

 Score = 84.0 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+I +L+ GIGG+R+  +++      +   S EIN  +++ YQ NFP T    +I  +  
Sbjct: 10 LRILELYSGIGGMRVAAKESG--LQFDIVGSYEINTTALEVYQHNFPKTPKAYNIMGLTL 67

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
            +     DV++   PCQPF++ G
Sbjct: 68 DHLESLSPDVIMMSPPCQPFTRQG 91


>gi|179506952|gb|ACB86652.1| EagI methylase [Pantoea agglomerans]
          Length = 401

 Score = 83.7 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 13/86 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLF G GG+   L+        +  F++E+ P   +TY  N PN  ++ GDI  I   +
Sbjct: 8  LDLFAGAGGLTCGLDMA----GFQSIFANELVPVYAETYSKNHPNAEMVVGDIRAIAESN 63

Query: 64 I--------PDHDVLLAGFPCQPFSQ 81
          +         + D+L  G PCQ FS 
Sbjct: 64 LMKSLGLKAGELDLLAGGPPCQGFSI 89


>gi|269119458|ref|YP_003307635.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
 gi|268613336|gb|ACZ07704.1| DNA-cytosine methyltransferase [Sebaldella termitidis ATCC 33386]
          Length = 383

 Score = 83.7 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M ++ + F GI        Q   +  +  E   + EI+ ++++  +    N    GDI+K
Sbjct: 1  MPRVVEAFSGI----RSQTQALKNLGIDHEVVATFEIDKWAIEMAKLLHGNVNNLGDISK 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +++P+HD+    FPCQ  S AG
Sbjct: 57 VDPKEVPEHDLFTYTFPCQDISTAG 81


>gi|317506898|ref|ZP_07964670.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254826|gb|EFV14124.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 331

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L + ++  G GG    LE            + EI+  +  T Q N P+  +  GD+ ++ 
Sbjct: 7  LSVLEICAGAGGQSSGLEMA----GFGHALAVEIDKDAAATLQLNRPSWDVHEGDVREVN 62

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++    D+L  G PC PFS AG
Sbjct: 63 GREYKGVDLLAGGVPCPPFSIAG 85


>gi|127416|sp|P10283|MTB1_BREEP RecName: Full=Modification methylase BepI; Short=M.BepI; AltName:
           Full=Cytosine-specific methyltransferase BepI
 gi|580766|emb|CAA31907.1| unnamed protein product [Brevibacterium epidermidis]
          Length = 403

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 40/122 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTF--------------------------NHRNVECFFSSEI 35
           +K+  LF G GG+ L LE  F                               E  F+++I
Sbjct: 1   MKVLSLFSGCGGMDLGLEGGFLAHRSSINSDLYASYISDHDENYVYLKKTGFETVFANDI 60

Query: 36  NPYSVKTYQANFPNTL--------------IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
            P++   +   F N +              +  +I   +     D DV+  GFPCQ FS 
Sbjct: 61  LPFAKLAWCNFFKNRVNQPENIFHLESIVDVVNNIENKQFSFPNDIDVVTGGFPCQDFSF 120

Query: 82  AG 83
           AG
Sbjct: 121 AG 122


>gi|328768493|gb|EGF78539.1| hypothetical protein BATDEDRAFT_13083 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 350

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSS-EINPYSVKTYQANFPNTLIFGDIAKIK 60
          L++ + F GIGG+   LE+  +        +S ++N ++   YQ NF        I  + 
Sbjct: 5  LRVLEFFSGIGGLHYGLERAESTA---TVLASFDVNEHANSCYQHNFGIKPSNKSIDTLT 61

Query: 61 TQDIPDHD--VLLAGFPCQPFSQAG 83
           +DI  +D    L   PCQPF+Q G
Sbjct: 62 AKDIEKYDSNCWLLSPPCQPFTQGG 86


>gi|210632067|ref|ZP_03297189.1| hypothetical protein COLSTE_01082 [Collinsella stercoris DSM
          13279]
 gi|210159724|gb|EEA90695.1| hypothetical protein COLSTE_01082 [Collinsella stercoris DSM
          13279]
          Length = 392

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           I DLF G GG+    E        +   + E    ++  Y  NF ++    D+  +   
Sbjct: 4  TIVDLFAGCGGLSKGFELA----GFDVVAAYENWDSAIACYNLNFNHSAKQLDLNDVDAA 59

Query: 62 -QDIP--DHDVLLAGFPCQPFSQAG 83
           Q+I       ++ G PCQ FS AG
Sbjct: 60 VQEIAPMKPTAIIGGPPCQDFSHAG 84


>gi|328772423|gb|EGF82461.1| hypothetical protein BATDEDRAFT_3612 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 344

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSS-EINPYSVKTYQANFPNTLIFGDIAKIK 60
          L++ + F GIGG+   LE+  +        +S ++N ++   YQ NF        I  + 
Sbjct: 4  LRVLEFFSGIGGLHYGLERAESTA---TVLASFDVNEHANSCYQHNFGIKPSNKSIDTLT 60

Query: 61 TQDIPDHD--VLLAGFPCQPFSQAG 83
           +DI  +D    L   PCQPF+Q G
Sbjct: 61 AKDIEKYDSNCWLLSPPCQPFTQGG 85


>gi|78776322|ref|YP_392637.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|78496862|gb|ABB43402.1| DNA (cytosine-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 395

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 31/113 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-----------------------NHRNVECFFSSEINPY 38
           +K+   F G GG+ +  E  F                            E  F+ +I   
Sbjct: 4   IKVASFFSGCGGLDIGFEGDFETNSTSIRNKSWIQNTNEKKCKVKKTTFETVFACDIKKS 63

Query: 39  SVKTYQANFPNTLIFG-----D-IAKIKTQDI--PDHDVLLAGFPCQPFSQAG 83
           +   +++ F    +F      D I K    +   P  D++  GFPCQ FS AG
Sbjct: 64  AKIAWESYFKKENVFHLESIVDLIKKAHNNEFIFPHADIVTGGFPCQDFSIAG 116


>gi|281425045|ref|ZP_06255958.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Prevotella oris F0302]
 gi|281400889|gb|EFB31720.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Prevotella oris F0302]
          Length = 412

 Score = 83.7 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++    LF GIG      E        +  F  EI+ +        +PN++ + +I K  
Sbjct: 4  IITHASLFSGIG----APELAAFWLGWQNAFHCEISKFCNTILNYWYPNSIGYENIKKTD 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
                  DVL  GFPCQPFS AG
Sbjct: 60 FSKWQGKIDVLTGGFPCQPFSSAG 83


>gi|67922668|ref|ZP_00516173.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67855516|gb|EAM50770.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 282

 Score = 83.7 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQ 62
          + DLF G GG+    +Q       E     +    ++ T+Q N P +  I  D+A   + 
Sbjct: 9  LLDLFSGCGGLSYGFQQA----GFEVIAGIDNWKDALATFQKNHPTSQGILMDLAVASSS 64

Query: 63 DI-----PDHDVLLAGFPCQPFSQAG 83
           I        DV++ G PCQ FS +G
Sbjct: 65 KISQQINKSIDVIVGGPPCQGFSISG 90


>gi|302873652|ref|YP_003842285.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307686624|ref|ZP_07629070.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302576509|gb|ADL50521.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 445

 Score = 83.3 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 29/104 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---------NTLIFGD 55
            DLFCG GG+   L Q          FSS+IN    +TY                   GD
Sbjct: 5   IDLFCGAGGMSEGLIQA----GFHILFSSDINEDVQRTYMNRHEQLGLLQGVNTHYHRGD 60

Query: 56  IAKIKTQDIP----------------DHDVLLAGFPCQPFSQAG 83
           + ++  + I                 D D +  G PCQ FS+AG
Sbjct: 61  VRELTGEFIRNSIQNLAIFAEGSVPEDIDAIFGGPPCQGFSRAG 104


>gi|85703012|ref|ZP_01034116.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
 gi|85671940|gb|EAQ26797.1| DNA cytosine methyltransferase M.NgoMIII [Roseovarius sp. 217]
          Length = 387

 Score = 83.3 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 17/94 (18%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNT 50
          M++  +LF G GG+ + + Q             + + ++  T + N          +P  
Sbjct: 1  MMRSVELFVGAGGLGIGVSQA----GFRPAAVMDWDRWACDTLRENKERGLDPIAHWP-- 54

Query: 51 LIFGDIAKIKTQDI-PDHDVLLAGFPCQPFSQAG 83
          +  GDI +     +    D++  G PCQPFS  G
Sbjct: 55 IHEGDIRQFDFGTVDGTVDLVTGGPPCQPFSMGG 88


>gi|320109274|ref|YP_004184864.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927795|gb|ADV84870.1| DNA-cytosine methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 409

 Score = 83.3 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 15/91 (16%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          K    F G  G+ L LEQ       +C  ++E +  +  T + N P+  ++  D+  +  
Sbjct: 8  KFVSFFAGARGLDLGLEQA----GWKCIAANEYDRAASDTIRLNEPDLPLYSEDVRNVTG 63

Query: 62 QDIPDHDV---------LLAGFPCQPFSQAG 83
          + +   D+         ++ G PCQ FS AG
Sbjct: 64 KRLMK-DLGVRPRELYAVVGGPPCQAFSTAG 93


>gi|194098027|ref|YP_002001075.1| methylase [Neisseria gonorrhoeae NCCP11945]
 gi|239998490|ref|ZP_04718414.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|240013615|ref|ZP_04720528.1| methylase [Neisseria gonorrhoeae DGI18]
 gi|240016054|ref|ZP_04722594.1| methylase [Neisseria gonorrhoeae FA6140]
 gi|240080196|ref|ZP_04724739.1| methylase [Neisseria gonorrhoeae FA19]
 gi|240112409|ref|ZP_04726899.1| methylase [Neisseria gonorrhoeae MS11]
 gi|240115149|ref|ZP_04729211.1| methylase [Neisseria gonorrhoeae PID18]
 gi|240117433|ref|ZP_04731495.1| methylase [Neisseria gonorrhoeae PID1]
 gi|240120685|ref|ZP_04733647.1| methylase [Neisseria gonorrhoeae PID24-1]
 gi|240122989|ref|ZP_04735945.1| methylase [Neisseria gonorrhoeae PID332]
 gi|240125241|ref|ZP_04738127.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|240127695|ref|ZP_04740356.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|254493209|ref|ZP_05106380.1| methylase [Neisseria gonorrhoeae 1291]
 gi|260441033|ref|ZP_05794849.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|268594349|ref|ZP_06128516.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|268596345|ref|ZP_06130512.1| methylase [Neisseria gonorrhoeae FA19]
 gi|268598472|ref|ZP_06132639.1| methylase [Neisseria gonorrhoeae MS11]
 gi|268600825|ref|ZP_06134992.1| methylase [Neisseria gonorrhoeae PID18]
 gi|268603130|ref|ZP_06137297.1| methylase [Neisseria gonorrhoeae PID1]
 gi|268681611|ref|ZP_06148473.1| methylase [Neisseria gonorrhoeae PID332]
 gi|268683839|ref|ZP_06150701.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268686080|ref|ZP_06152942.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044365|ref|ZP_06570074.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|293399551|ref|ZP_06643704.1| methylase [Neisseria gonorrhoeae F62]
 gi|193933317|gb|ACF29141.1| methylase [Neisseria gonorrhoeae NCCP11945]
 gi|226512249|gb|EEH61594.1| methylase [Neisseria gonorrhoeae 1291]
 gi|268547738|gb|EEZ43156.1| methylase [Neisseria gonorrhoeae 35/02]
 gi|268550133|gb|EEZ45152.1| methylase [Neisseria gonorrhoeae FA19]
 gi|268582603|gb|EEZ47279.1| methylase [Neisseria gonorrhoeae MS11]
 gi|268584956|gb|EEZ49632.1| methylase [Neisseria gonorrhoeae PID18]
 gi|268587261|gb|EEZ51937.1| methylase [Neisseria gonorrhoeae PID1]
 gi|268621895|gb|EEZ54295.1| methylase [Neisseria gonorrhoeae PID332]
 gi|268624123|gb|EEZ56523.1| methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268626364|gb|EEZ58764.1| methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011259|gb|EFE03255.1| methylase [Neisseria gonorrhoeae DGI2]
 gi|291610120|gb|EFF39242.1| methylase [Neisseria gonorrhoeae F62]
 gi|317163768|gb|ADV07309.1| methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 112

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA-KIK 60
               DLF GIGG R+ ++    +   E  FSSE +  +  TY+ANF     FGDI  +  
Sbjct: 40  FTFIDLFAGIGGFRIAMQ----NLGGEYVFSSEWDEKAKLTYEANFGEVP-FGDITLEEI 94

Query: 61  TQDIPD-HDVLLA 72
            Q IP   DVL  
Sbjct: 95  KQYIPKQFDVLCG 107


>gi|159030572|emb|CAO88235.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 426

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG+ L LE        +   + E +      +  NFP    I  DIAK+ +++
Sbjct: 8  IDLFAGCGGMSLGLEAA----GFDIAVAVEFDAVHSLVHHFNFPYCQTICRDIAKVTSRE 63

Query: 64 IP----------DHDVLLAGFPCQPFSQAG 83
          I           D  ++  G PCQ FS  G
Sbjct: 64 IWELLKLKGYATDVSLIAGGPPCQGFSLIG 93


>gi|217977517|ref|YP_002361664.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
 gi|217502893|gb|ACK50302.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
          Length = 393

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          + F G G  R  L         +C F+++ +      Y  N+  N  IFGD+AKI+  D+
Sbjct: 10 EFFAGGGMARAGL-----GDGWQCVFANDFSKMKAAAYIQNWGSNHFIFGDVAKIRPADM 64

Query: 65 PDH-DVLLAGFPCQPFSQAG 83
          P   D+  A FPCQ  S AG
Sbjct: 65 PGVADLAWASFPCQDLSLAG 84


>gi|157691352|ref|YP_001485814.1| DNA (cytosine-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680110|gb|ABV61254.1| possible DNA (cytosine-5-)-methyltransferase [Bacillus pumilus
          SAFR-032]
          Length = 261

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +  +LF GIGGI L  E       +E     E N +  K    NFP   +F D+ K+  +
Sbjct: 11 RSIELFAGIGGIALAAEMA----GIEVMVFCEQNDFCRKVLNKNFPGVPVFNDVKKLNRE 66

Query: 63 DIPD---------HDVLLAGFPCQPFSQAG 83
           + +          D++  G+PCQ  S  G
Sbjct: 67 LLEEEGLINRNESIDIISGGYPCQGESVIG 96


>gi|297159196|gb|ADI08908.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 664

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI-------- 56
            DLF G GG+ L L++           + + +  +++T+ ANFP   +  D+        
Sbjct: 45  VDLFSGAGGLSLGLQRA----GWTTAAAVDFDERALETHAANFPGMSLRMDLGNPAERDR 100

Query: 57  -AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             ++        D++  G PCQPFS+AG
Sbjct: 101 LEQVLEPAKGKIDLVAGGPPCQPFSRAG 128


>gi|126740127|ref|ZP_01755817.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
 gi|126718946|gb|EBA15658.1| DNA modification methylase M.NGOI [Roseobacter sp. SK209-2-6]
          Length = 319

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   +L  G GG  L LE+       +     EI+ +   T + N P+  ++  D+   
Sbjct: 1  MLTSVELCAGAGGQALGLEKA----GFDHTALVEIDKHCCATLRHNRPSWNVLEEDVRNF 56

Query: 60 K--TQDIPDHDVLLAGFPCQPFSQAG 83
          K    +    D+L  G PC PFS AG
Sbjct: 57 KEVAGNYRGIDLLAGGLPCPPFSVAG 82


>gi|310817513|ref|YP_003949871.1| cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
 gi|309390585|gb|ADO68044.1| Cytosine-specific methyltransferase [Stigmatella aurantiaca
          DW4/3-1]
          Length = 332

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L   ++  G GG  + L+        E   + EI+ ++  T + N P   +   D+    
Sbjct: 12 LTAIEICAGAGGQAIGLDMA----GFEHVAAVEIDKHACATLRLNRPQWRVFEEDLKDFS 67

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L  G PC PFS AG
Sbjct: 68 GSSFRGVDLLAGGVPCPPFSIAG 90


>gi|166364460|ref|YP_001656733.1| cytosine-specific methyltransferase [Microcystis aeruginosa
          NIES-843]
 gi|166086833|dbj|BAG01541.1| cytosine-specific methyltransferase [Microcystis aeruginosa
          NIES-843]
          Length = 420

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG+ L LE        +   + E +      +  NFP    I  DIAK+ +++
Sbjct: 8  IDLFAGCGGMSLGLEAA----GFDIAVAVEFDAVHSLVHHFNFPYCQTICRDIAKVTSRE 63

Query: 64 I----------PDHDVLLAGFPCQPFSQAG 83
          I           D  ++  G PCQ FS  G
Sbjct: 64 ILELLKLKGYATDVSLIAGGPPCQGFSLIG 93


>gi|71893964|ref|YP_279410.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           J]
 gi|71852091|gb|AAZ44699.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           J]
          Length = 329

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
               DLF G GG+   L             S EI   +V+TY  NF             D
Sbjct: 15  YNFIDLFSGAGGLSCGLVMA----GFLPLASLEIMKQAVETYAYNFKKRSKNKELFKLSD 70

Query: 56  IAKIKTQ-DIPDH------DVLLAGFPCQPFSQAG 83
           I   K + +  DH      D++  GFPCQ FS AG
Sbjct: 71  IRDSKIKSEFYDHFKDQELDLIAGGFPCQGFSMAG 105


>gi|307294815|ref|ZP_07574657.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306879289|gb|EFN10507.1| DNA-cytosine methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 394

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTL 51
          ++  +LF G GG+ + + +       +     E + +   T + N          +P   
Sbjct: 7  MRAIELFAGAGGLGMGISKA----GFQPTQVVEWDRWCCDTLRENRQAKSGGIGHWP-LP 61

Query: 52 IFGDIAKIKT-QDIPDHDVLLAGFPCQPFSQAG 83
            GDI  +   +     D++  G PCQPFS  G
Sbjct: 62 TEGDIRLVDFRKHEGKIDLVTGGPPCQPFSLGG 94


>gi|289191821|ref|YP_003457762.1| DNA-cytosine methyltransferase [Methanocaldococcus sp. FS406-22]
 gi|288938271|gb|ADC69026.1| DNA-cytosine methyltransferase [Methanocaldococcus sp. FS406-22]
          Length = 310

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + DLF G GG            N +   + E     VKTY  N    +   DI +I  
Sbjct: 1  MNVIDLFSGCGGFSKGF----LDENFKILGAIENFKPVVKTYLYNIKAPVWMDDIKRIPP 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          +           DV++   PC+PF++A
Sbjct: 57 KAFDEFIKNEKVDVIIGSPPCEPFTKA 83


>gi|124027997|ref|YP_001013317.1| site-specific DNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123978691|gb|ABM80972.1| Site-specific DNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 319

 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L++ DLF G GG      +             + NP ++++++ANFP  +    DI ++ 
Sbjct: 4  LRLVDLFSGAGGFAEGFRRA----GFRILLGVDNNPAAIRSFKANFPEAVALAMDIQEVT 59

Query: 61 TQDIPD----HDVLLAGFPCQPFSQA 82
           + I       DV++   PC+P++ A
Sbjct: 60 GKLIESLVGPVDVVIGSPPCEPYTGA 85


>gi|328913308|gb|AEB64904.1| putative DNA (Cytosine-5-)-methyltransferase [Bacillus
          amyloliquefaciens LL3]
          Length = 254

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI L  E       +E     E  P+  K    NFP   IF D   +  
Sbjct: 1  MKSIELFAGIGGIALAAEWA----GIETVAFCEREPFCQKVLNKNFPGVPIFDDACAVNR 56

Query: 62 QDIPD---------HDVLLAGFPCQPFSQAG 83
          Q + +           +L  G+PCQ  S  G
Sbjct: 57 QLLEEKGVIEPGGTISILSGGYPCQGESVIG 87


>gi|86151502|ref|ZP_01069717.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
          260.94]
 gi|85841849|gb|EAQ59096.1| type II DNA-methyltransferase [Campylobacter jejuni subsp. jejuni
          260.94]
          Length = 187

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK-- 58
           KI DLFCG GG     EQ   + N +     + N ++++T++ N P+  +I GD+    
Sbjct: 3  FKILDLFCGAGGFSNGFEQ---NENFKTIIGVDFNKFALETFKYNHPDSKVICGDLKDAL 59

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
               I        ++++ G PCQ FS  G
Sbjct: 60 VKSYIIDEAQKNGINMIIGGPPCQGFSSKG 89


>gi|79835456|gb|ABB52087.1| Mod [Arthrospira platensis]
          Length = 443

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQD 63
           DLF G GG+         ++  +  F+++ +  ++ T   N P  +   + I  +   +
Sbjct: 9  IDLFAGAGGMTTGF----KNQGFKLLFANDCDQAALATLSHNHPEAMTSSESIESLNPFE 64

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          +         D D+LL G PCQ FS  G
Sbjct: 65 LRQTLNLRKGDLDILLGGPPCQGFSTYG 92


>gi|257453711|ref|ZP_05618997.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
 gi|257448894|gb|EEV23851.1| modification methylase Eco47II [Enhydrobacter aerosaccus SK60]
          Length = 415

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFS 80
                +    +E + Y+ +T +AN P+  +I  DI  +    +    D+L  GFPCQPFS
Sbjct: 99  EQAGFKSVLLNEKDKYACQTLRANRPDWNVIEDDITNVDFSHLKGQVDLLTGGFPCQPFS 158

Query: 81  QAG 83
            AG
Sbjct: 159 YAG 161


>gi|320120362|gb|EFE28316.2| DNA (cytosine-5-)-methyltransferase [Filifactor alocis ATCC
          35896]
          Length = 363

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GIG   L   +     ++   ++SEI    +   + +FPN    GDI KIK 
Sbjct: 4  IKLGSLFDGIGVFPLAASRC----HIVPVWASEIEKVPMSITKRHFPNMEHLGDITKIKG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I    ++  G PCQ  S AG
Sbjct: 60 GEITPVHIITFGSPCQNLSLAG 81


>gi|145356149|ref|XP_001422300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582541|gb|ABP00617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 778

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF GIGG+ L LE+  +    +     E + +  +  +  +P+  +  D+A +  
Sbjct: 3  LRVASLFSGIGGLDLGLERAGH----DVVLRVERDAHCRELLRRQYPDGALMDDVAAVMP 58

Query: 62 QDIPDHDVLLAGFPCQPFS 80
          +D+   D+L AGFPC   S
Sbjct: 59 RDLDGVDLLAAGFPCNDCS 77


>gi|312601558|gb|ADQ90813.1| Cytosine-specific methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 406

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
               DLF G  G+   L             S EI   +V+TY  NF            GD
Sbjct: 92  YNFIDLFSGAAGLSCGLVMA----GFLPLASLEIMKQAVETYAYNFKKRSKNKELFKLGD 147

Query: 56  IA--KIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
           I   KIK++          D++  GFPCQ FS AG
Sbjct: 148 IRDSKIKSEFYNHFKDQELDLIAGGFPCQGFSMAG 182


>gi|257069715|ref|YP_003155970.1| DNA-methyltransferase Dcm [Brachybacterium faecium DSM 4810]
 gi|256560533|gb|ACU86380.1| DNA-methyltransferase Dcm [Brachybacterium faecium DSM 4810]
          Length = 431

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLF G GG+ L LEQ       E   S E +P     ++ NFP       D++K+  + 
Sbjct: 11 VDLFAGAGGLSLGLEQA----GFEIAASVEYDPIHAAVHEFNFPYGKTFASDVSKVTGEQ 66

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I         +  ++  G PCQ  S  G
Sbjct: 67 IRRESEIGDREIHLVAGGPPCQGISMIG 94


>gi|315917412|ref|ZP_07913652.1| cytosine specific DNA methyltransferase [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|313691287|gb|EFS28122.1| cytosine specific DNA methyltransferase [Fusobacterium
          gonidiaformans ATCC 25563]
          Length = 358

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-------NTLIFG 54
            + DLF G GG+             +     + +  ++KT++ N         +     
Sbjct: 9  FTVIDLFSGAGGLSKGFLDA----GFDVILGIDFDDSALKTFENNHGKAKALKLDLFNLD 64

Query: 55 DIAKIKTQDIPDH---DVLLAGFPCQPFSQAG 83
          +I  I ++   +H   DVL+ G PCQ FS AG
Sbjct: 65 NINYIISEFGREHNTLDVLVGGPPCQGFSLAG 96


>gi|284053383|ref|ZP_06383593.1| hypothetical protein AplaP_18124 [Arthrospira platensis str.
          Paraca]
 gi|291571237|dbj|BAI93509.1| type II DNA modification methyltransferase [Arthrospira platensis
          NIES-39]
          Length = 451

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQD 63
           DLF G GG+         ++  +  F+++ +  ++ T   N P  +   + I  +   +
Sbjct: 9  IDLFAGAGGMTTGF----KNQGFKLLFANDCDQAALATLSHNHPEAMTSSESIESLNPFE 64

Query: 64 IP--------DHDVLLAGFPCQPFSQAG 83
          +         D D+LL G PCQ FS  G
Sbjct: 65 LRQTLNLRKGDLDILLGGPPCQGFSTYG 92


>gi|313674498|ref|YP_004052494.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312941196|gb|ADR20386.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 735

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTY--QANF----PNTLIFG 54
               D F G GG      Q  ++        +S+IN     T+  + N         I  
Sbjct: 119 FTFVDFFAGAGGFSEGFLQAEHNNKFFNFLLASDINENCELTHLVRYNHQLGLDAEFIKQ 178

Query: 55  DIAKIKTQD-----IPD--HDVLLAGFPCQPFSQAG 83
           DI +    D     + D   DV+  G PCQ FS AG
Sbjct: 179 DITEPDFVDNLLSKLGDKNVDVVCGGPPCQSFSLAG 214


>gi|126433434|ref|YP_001069125.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
 gi|126233234|gb|ABN96634.1| DNA-cytosine methyltransferase [Mycobacterium sp. JLS]
          Length = 349

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIPDHDVLLAGFPC 76
          +   F  +  +  FS E+N ++  TY ANF  + + +GDI +    ++P  DV++ G PC
Sbjct: 1  MTAGFKPQGFDPVFSVELNLHAAATYAANFGEDHIFWGDIDEALKGEVPHADVVIGGPPC 60

Query: 77 QPFSQAG 83
          Q FS  G
Sbjct: 61 QGFSNLG 67


>gi|330985029|gb|EGH83132.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 422

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIK 60
           +  + F G G  R  L         +C F+++ +P   + Y+ N+     L+  DI K+ 
Sbjct: 33  RFYEFFAGGGMARAGL-----GDGWDCLFANDFDPMKGRAYRDNWGGGLDLMVEDINKLT 87

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
           T+ +PD  D++ A FPCQ  S AG
Sbjct: 88  TEQLPDQADLVWASFPCQDLSLAG 111


>gi|241666957|ref|YP_002985041.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240862414|gb|ACS60079.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 393

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTL 51
          ++  +LF G GG+ + + +             E + +   T + N          +P   
Sbjct: 1  MRAIELFAGAGGLGMGVSRA----GFTPQAVVEWDRWCCDTIRENREKGIASLAGWP-MP 55

Query: 52 IFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          I GD+  +  +      D++  G PCQPFS  G
Sbjct: 56 IEGDVRGVNFRGFEGKLDLVTGGPPCQPFSLGG 88


>gi|300781468|ref|ZP_07091322.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium genitalium
           ATCC 33030]
 gi|300533175|gb|EFK54236.1| DNA (cytosine-5-)-methyltransferase [Corynebacterium genitalium
           ATCC 33030]
          Length = 347

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-- 60
           ++ DLF G GG+ L  +        +     +    +++TY +NF +     D+A     
Sbjct: 30  RVVDLFSGCGGLSLGFQAA----GFDVLAGFDHWEPAIETYNSNFGHHAEMLDLANFDKS 85

Query: 61  ------TQDIPDHDVLLAGFPCQPFSQAG 83
                    + +   ++ G PCQ FS AG
Sbjct: 86  AGRLGEFSALSEFPAIIGGPPCQDFSTAG 114


>gi|228899601|ref|ZP_04063856.1| Modification methylase SinI [Bacillus thuringiensis IBL 4222]
 gi|228860031|gb|EEN04436.1| Modification methylase SinI [Bacillus thuringiensis IBL 4222]
          Length = 362

 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +     F G GG+ + + +       +   S EI     +T + N P+  ++ GDI    
Sbjct: 1  MNCISFFAGAGGLDMGIHKA----GFDVRVSVEIESVYCETLRMNHPDWNVVEGDIMMYN 56

Query: 61 TQDI--------PDHDVLLAGFPCQPFSQAG 83
           + +         + D+++ G PCQ FS AG
Sbjct: 57 KEKVLEQANLKEGEVDLMIGGSPCQSFSTAG 87


>gi|298346372|ref|YP_003719059.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298236433|gb|ADI67565.1| DNA-cytosine methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 508

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG  L          +E  ++SEI P+ +       P     GDI  I  
Sbjct: 5  LRLGSLFDGSGGFPL----AATKVGIEPAWASEIEPFPILVTTTRLPQMQHLGDICNIDG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   DV+  G PCQ  S AG
Sbjct: 61 SQLEPVDVVTFGSPCQDLSVAG 82


>gi|320101441|ref|YP_004177033.1| DNA-cytosine methyltransferase [Desulfurococcus mucosus DSM 2162]
 gi|319753793|gb|ADV65551.1| DNA-cytosine methyltransferase [Desulfurococcus mucosus DSM 2162]
          Length = 323

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           K  D+F G GG  L    +      +   + +    + +TY+ANFP+TL+   D+  + 
Sbjct: 5  YKYIDVFSGAGGFSLGFHLSGR---FKSLLAVDSFKPAAETYKANFPHTLVVNEDVKDLT 61

Query: 61 TQDI-----PD-HDVLLAGFPCQPFSQA 82
           + +     PD  DV++   PC+PF+ A
Sbjct: 62 GEILTGLVKPDEVDVVIGSPPCEPFTGA 89


>gi|257466254|ref|ZP_05630565.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium gonidiaformans
          ATCC 25563]
          Length = 353

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-------NTLIFG 54
            + DLF G GG+             +     + +  ++KT++ N         +     
Sbjct: 4  FTVIDLFSGAGGLSKGFLDA----GFDVILGIDFDDSALKTFENNHGKAKALKLDLFNLD 59

Query: 55 DIAKIKTQDIPDH---DVLLAGFPCQPFSQAG 83
          +I  I ++   +H   DVL+ G PCQ FS AG
Sbjct: 60 NINYIISEFGREHNTLDVLVGGPPCQGFSLAG 91


>gi|86134515|ref|ZP_01053097.1| DNA (cytosine-5-)-methyltransferase [Polaribacter sp. MED152]
 gi|85821378|gb|EAQ42525.1| DNA (cytosine-5-)-methyltransferase [Polaribacter sp. MED152]
          Length = 583

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L + D FCG GG      Q       +     +    ++ TY  NF       DI K K 
Sbjct: 4  LTVIDFFCGAGGFSEGFRQ----VGFKILEGFDNWQPAINTYNYNFDTESKLTDILKFKD 59

Query: 61 ----TQDIPDHDVLLAGFPCQPFS 80
                ++PD D+++   PC  FS
Sbjct: 60 SLEEIDNLPDSDIIIGSPPCVSFS 83


>gi|72080942|ref|YP_288000.1| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 393

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
               DLF G GG+   L             S +I   +V+TY  NF            GD
Sbjct: 69  YNFIDLFSGAGGLSCGLVMA----GFLPLASLKIMKQAVETYAYNFKKRSKNKELFKLGD 124

Query: 56  IAKIKTQ-DIPDH------DVLLAGFPCQPFSQAG 83
           I   K + +  DH      D++  GFPCQ FS AG
Sbjct: 125 IRDSKIKSEFYDHFKDQELDLIAGGFPCQGFSMAG 159


>gi|78047901|ref|YP_364076.1| putative cytosine-specific DNA methylase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|78036331|emb|CAJ24022.1| putative cytosine-specific DNA methylase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
          Length = 333

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L       + +C  +++ +P    +Y AN+  + L  GD+A +
Sbjct: 1  MANFYEFFAGGGMARAGL-----GPDWQCLLANDFDPKKAASYAANWGTDHLRVGDVAAL 55

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
           T D+P   D+  A FPCQ  S AG
Sbjct: 56 TTADLPAGADLAWASFPCQDLSLAG 80


>gi|257386518|ref|YP_003176291.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM
          12286]
 gi|257168825|gb|ACV46584.1| DNA-cytosine methyltransferase [Halomicrobium mukohataei DSM
          12286]
          Length = 452

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   DLFCG GG+   L         E  +  +    +  TY+AN    +  GDI + + 
Sbjct: 6  LTAIDLFCGAGGLSQGLHDA----GFETLWGIDHEENTKPTYEANHDCEMTVGDIREEEP 61

Query: 62 QDI----PDHDVLLAGFPCQPFSQAG 83
           D+     + D++  G PC  FS  G
Sbjct: 62 PDLGLEEGELDLVAGGPPCPTFSLVG 87


>gi|254456253|ref|ZP_05069682.1| Cytosine-specific methyltransferase HphIA [Candidatus
          Pelagibacter sp. HTCC7211]
 gi|207083255|gb|EDZ60681.1| Cytosine-specific methyltransferase HphIA [Candidatus
          Pelagibacter sp. HTCC7211]
          Length = 342

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDI 56
          ML + D F G GG+    ++       +   + +     +KT+  NF +     L  GD 
Sbjct: 1  MLSVNDFFSGCGGLSQGFKEA----GFKIQVAVDKEEAFLKTFSHNFKDSQTKNLDLGDS 56

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +   DIP  D+++AG PCQ FS  G
Sbjct: 57 KTLN--DIPKSDIIIAGPPCQGFSITG 81


>gi|291457577|ref|ZP_06596967.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium breve DSM
           20213]
 gi|291380630|gb|EFE88148.1| DNA (cytosine-5-)-methyltransferase [Bifidobacterium breve DSM
           20213]
          Length = 191

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++   LF GI          +     E    +E+ P+     + ++PN     D+ K+  
Sbjct: 27  IRYISLFSGI----EAASVAWQPLGWEPIAYAEVEPFPKAVLKHHYPNVPDLRDMTKVNW 82

Query: 62  QDIPDH-DVLLAGFPCQPFSQAG 83
           ++     DV++ G PCQ FS AG
Sbjct: 83  KEYHHAADVVVGGSPCQAFSIAG 105


>gi|298492225|ref|YP_003722402.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
 gi|298234143|gb|ADI65279.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
          Length = 434

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 17/96 (17%)

Query: 1  MLK----ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGD 55
          M +      DLF G GG+ L  EQ       +   S E++P     ++ NFP   ++   
Sbjct: 1  MFRQRPIAVDLFAGAGGMTLGFEQA----GFDVLVSVELDPIHCAIHKFNFPFWKVLCKS 56

Query: 56 IAKIKTQDIP--------DHDVLLAGFPCQPFSQAG 83
          + +    +I         + DV+  G PCQ FS  G
Sbjct: 57 VEETTGSEIRNSSDIGNQEIDVVFGGPPCQGFSLIG 92


>gi|168697993|ref|ZP_02730270.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 489

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   +  GI          ++    +  F SEI+ +       ++P+T   GD   I  
Sbjct: 1  MRYGSVCSGI----EAATAAWHPLGWQPIFFSEIDNFPRAVLAHHYPHTPCHGDFTTIGK 56

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
                D+L+ G PCQ FS AG
Sbjct: 57 DTYDPIDLLVGGTPCQSFSVAG 78


>gi|261402489|ref|YP_003246713.1| DNA-cytosine methyltransferase [Methanocaldococcus vulcanius M7]
 gi|261369482|gb|ACX72231.1| DNA-cytosine methyltransferase [Methanocaldococcus vulcanius M7]
          Length = 310

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + DLF G GG            N     + E     VKTY  N    +   DI +I  
Sbjct: 1  MNVIDLFSGCGGFSKGF----LDENFRILGAIENFKPVVKTYLYNIKAPVWMDDIKRIPP 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          +           DV++   PC+PF++A
Sbjct: 57 KAFDEFIKNEKVDVIIGSPPCEPFTKA 83


>gi|111021129|ref|YP_704101.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus jostii RHA1]
 gi|110820659|gb|ABG95943.1| probable DNA (cytosine-5-)-methyltransferase [Rhodococcus jostii
          RHA1]
          Length = 392

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +             EI+P +    +  F +  +  D+ K+++  +P 
Sbjct: 15 LFAGIGGLELGLRE----HGWNTELLCEIDPGAQAVLRTQFTDVPVHSDVTKLRS--LPR 68

Query: 66 DHDVLLAGFPCQPFSQAG 83
          D +++ AGFPCQ  SQAG
Sbjct: 69 DIELVAAGFPCQDLSQAG 86


>gi|15668743|ref|NP_247542.1| type II R/M system modification methyltransferase
          [Methanocaldococcus jannaschii DSM 2661]
 gi|2500153|sp|Q57983|MT51_METJA RecName: Full=Probable modification methylase MJ0563; AltName:
          Full=Cytosine-specific methyltransferase MJ0563;
          AltName: Full=M.MjaVIIIP
 gi|1591269|gb|AAB98555.1| modification methylase, type II R/M system [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 310

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + DLF G GG            N     + E     VKTY  N    +   DI +I  
Sbjct: 1  MNVIDLFSGCGGFSKGF----LDENFRILGAIENFKPVVKTYLYNIKAPVWMDDIKRIPP 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          +           DV++   PC+PF++A
Sbjct: 57 KAFDEFIKNEKVDVIIGSPPCEPFTKA 83


>gi|170063953|ref|XP_001867327.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus]
 gi|167881402|gb|EDS44785.1| DNA (cytosine-5)-methyltransferase [Culex quinquefasciatus]
          Length = 345

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
           ++ +LF GIGG+   + +           + EINP +   Y  NF P      +I  + 
Sbjct: 16 YRVLELFSGIGGMHYAIRRAGKP--FRVVAAMEINPVANTIYNHNFGPGAATNSNILSLT 73

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           + I     +V+L   PCQPF++ G
Sbjct: 74 PERIDQLGANVILMSPPCQPFTRNG 98


>gi|328543334|ref|YP_004303443.1| DNA methylase, C-5 cytosine-specific family [polymorphum gilvum
           SL003B-26A1]
 gi|326415695|gb|ADZ72758.1| DNA methylase, C-5 cytosine-specific family [Polymorphum gilvum
           SL003B-26A1]
          Length = 418

 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           +  DLF G GG+ +                ++++P + +T++ NFP  +   G ++K+  
Sbjct: 23  RCVDLFAGAGGLAVGFRSA----GWGIVAGNDVDPDAAQTFRLNFPEASFFEGPVSKLAA 78

Query: 62  QDI--------PDHDVLLAGFPCQPFS 80
            ++         D D L+ G PCQ FS
Sbjct: 79  DELLADCGIERGDLDCLVGGPPCQSFS 105


>gi|304411687|ref|ZP_07393299.1| DNA-cytosine methyltransferase [Shewanella baltica OS183]
 gi|307306261|ref|ZP_07586006.1| DNA-cytosine methyltransferase [Shewanella baltica BA175]
 gi|304349875|gb|EFM14281.1| DNA-cytosine methyltransferase [Shewanella baltica OS183]
 gi|306911134|gb|EFN41561.1| DNA-cytosine methyltransferase [Shewanella baltica BA175]
          Length = 371

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 20/98 (20%)

Query: 4   ITDLFCGIGGIRLD-LEQTFNHR-NVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
           I DLF G GG+ L  LE    H+       + E+NP +  TY+ NF      L  GDI++
Sbjct: 28  IVDLFSGCGGLTLGALEAARKHQLTCNIKLAVELNPEAANTYEENFSENLLNLHKGDISE 87

Query: 59  I-------KTQDIPD--------HDVLLAGFPCQPFSQ 81
           I          +I +         DVLLAG PCQ  S+
Sbjct: 88  IITNYPGDNISEIEEKVRFQNNNIDVLLAGPPCQGHSR 125


>gi|291539766|emb|CBL12877.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 366

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFG 54
              DLF G GG+             +     + +  ++KT++ N  N            
Sbjct: 5  FTCVDLFSGAGGLSRGF----YDAGYDVVLGVDFDEAALKTFRENHGNAEAMKLDLFNHD 60

Query: 55 DIAKI----KTQDIPDHDVLLAGFPCQPFSQAG 83
          +I  I    + +DI   DVL+ G PCQ FS AG
Sbjct: 61 NINVIVDFLRERDI-KLDVLVGGPPCQGFSIAG 92


>gi|330936955|gb|EGH41063.1| HsdRM [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 313

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M     LF G GG    + +       +   +++I  Y+ + Y AN P T  I G +  I
Sbjct: 1  MPSAVSLFSGCGGSDAGILRA----GFDVLMANDIMHYAREVYLANHPETDYIRGSVTTI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            ++ P  ++L+  +PCQ FSQ G
Sbjct: 57 --ENFPAAELLVGCYPCQGFSQGG 78


>gi|90425781|ref|YP_534151.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris
          BisB18]
 gi|90107795|gb|ABD89832.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris
          BisB18]
          Length = 374

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G G + L L+            + E+  ++  TY+AN P    +  D+  +  Q 
Sbjct: 19 IDLFSGGGALTLGLKTA----GFRVVSAVEVEQHAFATYKANHPEVFAYKQDVRTVDGQS 74

Query: 64 IPDH------DVLLAGFPCQPFS 80
          +  H      D+L    PCQ F+
Sbjct: 75 LSMHAPRRKIDLLAGCPPCQGFT 97


>gi|302870555|ref|YP_003839192.1| C-5 cytosine-specific DNA methylase [Micromonospora aurantiaca
          ATCC 27029]
 gi|302573414|gb|ADL49616.1| C-5 cytosine-specific DNA methylase [Micromonospora aurantiaca
          ATCC 27029]
          Length = 183

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I  +  G GG+ + +E        +  + +E + ++      ++P+    GDI  +   
Sbjct: 10 RIGSVCTGYGGLDMAVELV---LGGQLAWYAETDRHAATVLAHHWPDVDNLGDIRTVDWT 66

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +   D++ AGFPCQ  S AG
Sbjct: 67 QVAPVDIVTAGFPCQDISNAG 87


>gi|218848105|ref|YP_002454768.1| DNA-cytosine methyltransferase [Bacillus cereus G9842]
 gi|218546236|gb|ACK98629.1| DNA-cytosine methyltransferase [Bacillus cereus G9842]
          Length = 438

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          +  +F G GG+     +     +     + E++  +  TY+ N P T ++  DI  +K  
Sbjct: 8  VIGIFSGCGGLDTGFSE----YDFNVQLAIELDSDACDTYKKNHPETEVWNRDIKTVKGD 63

Query: 63 DIPDHD-----VLLAGFPCQPFSQ 81
          +I         +LL G PCQ FS 
Sbjct: 64 EIRKLVGNKPLILLGGSPCQSFSI 87


>gi|213692399|ref|YP_002322985.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213523860|gb|ACJ52607.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320458540|dbj|BAJ69161.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 401

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF GI          +     +    +EI P+     + ++P     GD+ K+  
Sbjct: 4  IRYISLFSGI----EAATVAWRQLGWKPIAYAEIEPFPKAVLRQHYPEVPDLGDMTKVDW 59

Query: 62 QDIPDH-DVLLAGFPCQPFSQAG 83
          +      DV++ G PCQ FS AG
Sbjct: 60 KQYHHAADVVVGGSPCQAFSIAG 82


>gi|187923153|ref|YP_001894795.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
 gi|187714347|gb|ACD15571.1| DNA-cytosine methyltransferase [Burkholderia phytofirmans PsJN]
          Length = 317

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          M     LF G GG    L             +++I PY+   Y  N P T    G +A I
Sbjct: 1  MPTAVSLFTGCGGSDAGL----VSLGFNVLMANDILPYARDVYLHNHPETDYRLGSVADI 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K+   P  ++L+  +PCQ FSQ G
Sbjct: 57 KS--FPKAELLVGCYPCQGFSQGG 78


>gi|239929797|ref|ZP_04686750.1| putative 5-methylcytosine methyltransferase [Streptomyces
          ghanaensis ATCC 14672]
 gi|291438128|ref|ZP_06577518.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291341023|gb|EFE67979.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 356

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI DLF G GG+ +  E+      V      E +  +  T +A      + GD+      
Sbjct: 5  KIVDLFAGPGGLDVAAEK----LGVPTVG-IEWDSAACATRRA-AGLETVEGDVRLYGPS 58

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D P+ DVL  G PCQ F+ AG
Sbjct: 59 DFPEADVLAGGPPCQTFTVAG 79


>gi|320094594|ref|ZP_08026360.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319978509|gb|EFW10086.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 365

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 15/91 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           +I  LF G GG+ L  +Q          F+ +++P +++T++ NF +T+ +  D+ ++ +
Sbjct: 36  RIVSLFSGAGGLDLGFQQA----GFPLSFAVDLSPAAIETHRRNFQDTVAVEADLTELGS 91

Query: 62  QDIPDH----------DVLLAGFPCQPFSQA 82
             + +H            ++ G PCQ FS+A
Sbjct: 92  DGVLEHLAPILEPGESIGVIGGPPCQGFSRA 122


>gi|313115273|ref|ZP_07800751.1| C-5 cytosine-specific DNA methylase [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|310622412|gb|EFQ05889.1| C-5 cytosine-specific DNA methylase [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 338

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGG+ L  E        E     E   Y     + ++PN   F DI     
Sbjct: 4  LTHVSLFSGIGGLDLAAEAA----GFETVCQCEWADYPYSILEQHWPNVPKFRDITTFTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS  G
Sbjct: 60 EAFFEKTGLETVTIISGGFPCQPFSSVG 87


>gi|262280408|ref|ZP_06058192.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262258186|gb|EEY76920.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 354

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG    L Q      ++     + +  + +TY+ANFP    +  DI ++ 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDIAIGLDFDKKASETYEANFPEAKFYNVDIRELD 56

Query: 61 TQDIPDH--DV--------LLAGFPCQPFS 80
           +++     D+        L+A  PCQPFS
Sbjct: 57 EKELAAAFKDINQKEEPLLLVACAPCQPFS 86


>gi|238025826|ref|YP_002910057.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae
          BGR1]
 gi|237875020|gb|ACR27353.1| DNA cytosine methyltransferase M.NgoMIII [Burkholderia glumae
          BGR1]
          Length = 407

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNT----LIF 53
          +K  +L+ G GG+ +           +     E + ++  T + N    FP      L  
Sbjct: 1  MKAVELYAGAGGLAMG----VGLAGFKPLAVVEWDRWACDTIRENQRRGFPLVADWPLYE 56

Query: 54 GDIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          GD+ K     +   + D+L  G PCQPFS  G
Sbjct: 57 GDVRKFDWSRLEGEEIDLLAGGPPCQPFSMGG 88


>gi|296110061|ref|YP_003617010.1| DNA-cytosine methyltransferase [Methanocaldococcus infernus ME]
 gi|295434875|gb|ADG14046.1| DNA-cytosine methyltransferase [Methanocaldococcus infernus ME]
          Length = 309

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + DLF G GG           +      + E    +V+TY  N    +   DI ++  
Sbjct: 1  MNLIDLFSGCGGFSKGF----LDQGFNILGAIENFKPAVETYIYNIKAKVWMEDIKRVPP 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          +           D+++   PC+PF++A
Sbjct: 57 KAFDKFIGEEKVDLIIGSPPCEPFTKA 83


>gi|213972219|ref|ZP_03400299.1| cytosine-specific DNA methylase [Pseudomonas syringae pv. tomato
          T1]
 gi|289626827|ref|ZP_06459781.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. aesculi
          str. NCPPB3681]
 gi|301386398|ref|ZP_07234816.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302062510|ref|ZP_07254051.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
 gi|213923026|gb|EEB56641.1| cytosine-specific DNA methylase [Pseudomonas syringae pv. tomato
          T1]
 gi|330870292|gb|EGH05001.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. aesculi
          str. 0893_23]
          Length = 382

 Score = 82.1 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L       + +C F+++ +P    +Y  N+  + L  GD+A +
Sbjct: 1  MANFYEFFAGGGMARAGL-----GPDWQCMFANDFDPKKAASYATNWGDDHLRVGDVAAL 55

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQAG 83
           T ++P   D+  A FPCQ  S AG
Sbjct: 56 TTTELPGVVDLAWASFPCQDLSLAG 80


>gi|301167156|emb|CBW26735.1| modification methylase (cytosine-specific DNA methylase)
          [Bacteriovorax marinus SJ]
          Length = 383

 Score = 82.1 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI---- 56
          L   D+F G GG+   LE       ++C    + N ++++T+  N  +   + GDI    
Sbjct: 6  LNFIDIFAGAGGLSCGLELA----GMKCVLGIDANKHAMETFARNHKHAQTYCGDITKLT 61

Query: 57 --AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              +K  D     V++ G PCQ FS  G
Sbjct: 62 KKELLKKLDGNHVHVVVGGPPCQGFSTVG 90


>gi|226363491|ref|YP_002781273.1| modification methylase [Rhodococcus opacus B4]
 gi|226241980|dbj|BAH52328.1| modification methylase [Rhodococcus opacus B4]
          Length = 381

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
          LF GIGG+ L L +             EI+P +    +  F +  +  D+ K+++  +P 
Sbjct: 4  LFAGIGGLELGLRE----HGWNTELLCEIDPGAQAVLRTRFTDVPVHSDVTKLRS--LPQ 57

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + +++ AGFPCQ  SQAG
Sbjct: 58 NIELVAAGFPCQDLSQAG 75


>gi|332970702|gb|EGK09683.1| DNA (cytosine-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 197

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 14 IRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD 66
          +   +   F++          E  ++++ +PY+VK Y ANF +     D+  I   ++P+
Sbjct: 1  MDKGILGDFHYLGNHYAKLPFEIAYAADYDPYAVKIYNANFSHQAEIKDVRDIVAGELPE 60

Query: 67 HDVLLAGFPCQPFSQ 81
          HD+LL GFPCQ FS 
Sbjct: 61 HDILLGGFPCQSFSI 75


>gi|319939117|ref|ZP_08013481.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
 gi|319812167|gb|EFW08433.1| modification methylase BsuRI [Streptococcus anginosus 1_2_62CV]
          Length = 434

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF------------------------NHRNVECFFSSEINP 37
           + +  LF G GG+ L  E                           +       +++++  
Sbjct: 63  INVVSLFSGAGGLDLGTELAGLASVVGLQKALEIFEDKKEFSKKRHKSIFHTIYTNDMFV 122

Query: 38  YSVKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + +TY+ NFP  +I    DI K+     P++++ + GFPC  FS+AG
Sbjct: 123 EANETYKKNFPPNIIQHQKDIRKV--AHFPNNELTVGGFPCPGFSEAG 168


>gi|34014717|dbj|BAC81824.1| methylase [Acidocella facilis]
          Length = 443

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + E++P     ++ NFP T +    +  +   +
Sbjct: 6  IDLFAGAGGLSLGFEQA----GFDVVAAVEVDPVHCGVHKFNFPQTAVVPRSVVGLTAAE 61

Query: 64 I--------PDHDVLLAGFPCQPFSQAG 83
          I           D +  G PCQ FS  G
Sbjct: 62 IRLAAGIGNRPVDCVFGGPPCQGFSMIG 89


>gi|300868191|ref|ZP_07112823.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300333815|emb|CBN58007.1| Cytosine-specific methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 395

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 23/98 (23%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIKT 61
             LF G  G+ L LE+       +     EI P +VKT   N P+     I  DI ++  
Sbjct: 14  VSLFTGACGLDLGLEKA----GFQTVSLVEIEPDAVKTISLNRPHLSLCAIPRDIREVSA 69

Query: 62  QDI----------------PDHDVLLAGFPCQPFSQAG 83
           Q +                 + D++  G PCQPFS AG
Sbjct: 70  QTLLKEGGKILGIDRPLRPGEVDLVTGGPPCQPFSTAG 107


>gi|224044835|ref|XP_002192893.1| PREDICTED: tRNA aspartic acid methyltransferase 1 [Taeniopygia
          guttata]
          Length = 399

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ GIGG+   L ++  H   E   + ++N  +   Y+ NFP+T ++   I  I 
Sbjct: 4  LRVLELYSGIGGMHQALRESCRHA--EVVAAVDVNTLANAVYKHNFPSTPLWAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILLSPPCQPFTRTG 86


>gi|163738696|ref|ZP_02146110.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741592|ref|ZP_02148983.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis
          2.10]
 gi|161385326|gb|EDQ09704.1| DNA modification methylase M.NGOI [Phaeobacter gallaeciensis
          2.10]
 gi|161388024|gb|EDQ12379.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 324

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   +L  G GG  L LE+       +     EI+ +   T + N P   ++  D+   
Sbjct: 1  MLTSVELCAGAGGQALGLEKA----GFDHTALVEIDKHCCATLRHNRPQWNVLEEDVRAF 56

Query: 60 KTQDIPDH--DVLLAGFPCQPFSQAG 83
          K +    H  D+L  G PC PFS AG
Sbjct: 57 KEEADAYHGIDLLAGGLPCPPFSVAG 82


>gi|71909137|ref|YP_286724.1| C-5 cytosine-specific DNA methylase [Dechloromonas aromatica RCB]
 gi|71848758|gb|AAZ48254.1| C-5 cytosine-specific DNA methylase [Dechloromonas aromatica RCB]
          Length = 571

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAKI 59
           +  DL+ GIGG  L LE       +E   S E    + +T   N  N        DI ++
Sbjct: 36  RAIDLYSGIGGWSLGLEMA----GIEVVASYEWWDKANRT---NHKNNQHLATEIDIRQL 88

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQA 82
           + +D+P   D+++   PC  FS A
Sbjct: 89  RLEDLPKNIDIVVGSPPCTQFSFA 112


>gi|254488706|ref|ZP_05101911.1| C-5 cytosine-specific DNA methylase [Roseobacter sp. GAI101]
 gi|214045575|gb|EEB86213.1| C-5 cytosine-specific DNA methylase [Roseobacter sp. GAI101]
          Length = 384

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K  + FCG G +R  L+        +C  +++I+P     Y+ N+    +  GDIA +  
Sbjct: 10 KYAEFFCGGGMVRAALQ-----DRWDCVLANDIDPMKCAVYERNWGQEALHQGDIATLPD 64

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +    D+  A  PCQ FS AG
Sbjct: 65 AKLRQPIDLYWASSPCQDFSLAG 87


>gi|319787787|ref|YP_004147262.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466299|gb|ADV28031.1| DNA-cytosine methyltransferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 425

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 29/107 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           LK+ DLF G GG+ L LEQ          F +E+N  +  TY  N      +        
Sbjct: 6   LKVVDLFAGCGGLSLGLEQA----GFVPVFVNELNDDARATYIQNRVERHEWLAEPGFHA 61

Query: 54  GDIAK--IKTQDIP---------------DHDVLLAGFPCQPFSQAG 83
            D+    +  + +P               + D+L+ G PCQ FS  G
Sbjct: 62  SDVKGMVLDKKYLPALEKRLKDTFAIEHGELDLLVGGPPCQGFSGIG 108


>gi|160873497|ref|YP_001552813.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|160859019|gb|ABX47553.1| DNA-cytosine methyltransferase [Shewanella baltica OS195]
 gi|315265725|gb|ADT92578.1| DNA-cytosine methyltransferase [Shewanella baltica OS678]
          Length = 385

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
          +K  DLF G GG+ L   Q      ++   + E++  +  TY+AN       P  LI GD
Sbjct: 1  MKAIDLFSGAGGLSLAAHQC----GIDVIAAIELDTAASITYRANLIEQLKAPTKLINGD 56

Query: 56 IAKIKTQDI--------PDHDVLLAGFPCQPFS 80
          I ++    +         + ++LL G PCQ FS
Sbjct: 57 INEVDLPALMKELKLKSGELELLLGGPPCQGFS 89


>gi|157953886|ref|YP_001498777.1| hypothetical protein AR158_C696R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068534|gb|ABU44241.1| hypothetical protein AR158_C696R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 362

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GI GI   L + F    VE     EIN  + +     FP+  +F D+ K   
Sbjct: 3  LKALELFAGIAGITHGL-RGF----VEPMAFVEINKDAQEFLSTKFPDKPVFDDVTKFSK 57

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
          +D  +  D++  GFPC  FS AG
Sbjct: 58 RDFDEPIDMITGGFPCTGFSIAG 80


>gi|227875051|ref|ZP_03993196.1| possible DNA-cytosine methyltransferase [Mobiluncus mulieris ATCC
          35243]
 gi|304390295|ref|ZP_07372248.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|306817338|ref|ZP_07451083.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
          35239]
 gi|227844329|gb|EEJ54493.1| possible DNA-cytosine methyltransferase [Mobiluncus mulieris ATCC
          35243]
 gi|304326051|gb|EFL93296.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304649779|gb|EFM47059.1| DNA (cytosine-5-)-methyltransferase [Mobiluncus mulieris ATCC
          35239]
          Length = 468

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +   ++SEI P+ +       P     GD+  +  
Sbjct: 4  LTLGSLFDGSGGFPL----AGIQAGIRPVWASEIEPFPILVTTRRLPQLTHVGDVTTVNG 59

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D+   DV+  G PCQ  S AG
Sbjct: 60 ADVDAVDVITFGSPCQDLSVAG 81


>gi|67514595|ref|NP_001020002.1| tRNA (cytosine-5-)-methyltransferase [Gallus gallus]
 gi|66766328|dbj|BAD99025.1| DNA methyltransferase 2 [Gallus gallus]
          Length = 398

 Score = 81.7 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++   I  I 
Sbjct: 4  LRVLELYSGIGGMHQALKESCICA--EVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTRIG 86


>gi|326921696|ref|XP_003207092.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Meleagris
          gallopavo]
          Length = 398

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++   I  I 
Sbjct: 4  LRVLELYSGIGGMHQALKESCVCA--EVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTRIG 86


>gi|257421714|ref|ZP_05598704.1| predicted protein [Enterococcus faecalis X98]
 gi|257163538|gb|EEU93498.1| predicted protein [Enterococcus faecalis X98]
          Length = 286

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F G GG+ L + Q      +    S EI+     T + NF + +   DI+KI   D  D 
Sbjct: 9  FSGAGGMDLGMLQA----GINVVESFEIDKKCCATLRKNFNHKVNECDISKITVLDQQDA 64

Query: 68 DVLLAGFPCQPFS 80
          DV +  FPC  +S
Sbjct: 65 DVYIGTFPCTKYS 77


>gi|319639604|ref|ZP_07994351.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
 gi|317399175|gb|EFV79849.1| cytosine-specific methyltransferase [Neisseria mucosa C102]
          Length = 348

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           + DLFCG GG+ L   Q       +     +    ++ TY A    T  I  D+  I  
Sbjct: 9  TVLDLFCGCGGLSLGFIQA----GFDVKLGIDYWQDAITTYTATHKGTQGIVADLFNITP 64

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          + I         DV++ G PCQ FS AG
Sbjct: 65 EQISQQTQIKQLDVIIGGPPCQGFSIAG 92


>gi|229490017|ref|ZP_04383870.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
 gi|229323118|gb|EEN88886.1| modification methylase DdeI [Rhodococcus erythropolis SK121]
          Length = 431

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPD 66
           F G GG+                   E+ P +  T+  NFP     G DI  I    + D
Sbjct: 97  FSGCGGMAEGFRMA----GFSVEGYIEVVPEARATFDRNFPGARCLGEDIRAIDEARVKD 152

Query: 67  ------HDVLLAGFPCQPFSQAG 83
                  DVL  G PCQ FS AG
Sbjct: 153 LLAQVDIDVLAGGPPCQGFSLAG 175


>gi|226307434|ref|YP_002767394.1| modification methylase [Rhodococcus erythropolis PR4]
 gi|226186551|dbj|BAH34655.1| putative modification methylase [Rhodococcus erythropolis PR4]
          Length = 444

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPD 66
           F G GG+                   E+ P +  T+  NFP     G DI  I    + D
Sbjct: 110 FSGCGGMAEGFRMA----GFSVEGYIEVVPEARATFDRNFPGARCLGEDIRAIDEARVKD 165

Query: 67  ------HDVLLAGFPCQPFSQAG 83
                  DVL  G PCQ FS AG
Sbjct: 166 LLAQVDIDVLAGGPPCQGFSLAG 188


>gi|188575624|ref|YP_001912553.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
          oryzae PXO99A]
 gi|188520076|gb|ACD58021.1| DNA (cytosine-5)-methyltransferase PliMCI [Xanthomonas oryzae pv.
          oryzae PXO99A]
          Length = 395

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIP- 65
          F G GG+   L +          +++EI+P   +TY AN P T +   DI K+  + I  
Sbjct: 2  FAGAGGLSEGLREA----GFTSLYANEISPRYAQTYAANHPATQVDSRDIRKVDARKIRN 57

Query: 66 -------DHDVLLAGFPCQPFSQ 81
                 + D++  G PCQ FS 
Sbjct: 58 LLGLKRGELDLIAGGPPCQGFSI 80


>gi|159029640|emb|CAO87718.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 306

 Score = 81.3 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+   DLF G GG+ L  ++           + +    ++  Y  NF + +   D+++  
Sbjct: 1  MIT-IDLFAGCGGLSLGFQKA----GFTIVAAFDNWIPAIDVYSNNFSHPIFNVDLSRES 55

Query: 61 TQDIP---DHDVLLAGFPCQPFSQAG 83
           Q+I    + ++++   PCQ FS AG
Sbjct: 56 NQEILAQYNPEIIVGSPPCQDFSSAG 81


>gi|182437151|ref|YP_001824870.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178465667|dbj|BAG20187.1| putative SacI methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 363

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIKT 61
             LF G GG+ L +E        E   + E N  +V T + NF +    +I  DI ++ T
Sbjct: 18  ISLFSGAGGLDLGVEAA----GYEVRAAVEHNADAVATMEKNFSHLQSEVIQRDILEVPT 73

Query: 62  QDI---------PDHDVLLAGFPCQPFSQAG 83
           +++            D+L+ G PC PFS++G
Sbjct: 74  KELLGAAGLKGRERPDLLVGGPPCTPFSKSG 104


>gi|90420969|ref|ZP_01228873.1| possible cytosine-specific DNA methylase [Aurantimonas
          manganoxydans SI85-9A1]
 gi|90334747|gb|EAS48523.1| possible cytosine-specific DNA methylase [Aurantimonas
          manganoxydans SI85-9A1]
          Length = 541

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DL+ GIGG  L L        VE   S E    +V T+  N    L   D+ ++  
Sbjct: 1  MRAIDLYAGIGGWSLGLRLA----GVEVVASYEWWQAAVDTHNGNHGGDLKPVDVRQLHL 56

Query: 62 QDI-PDHDVLLAGFPCQPFS 80
           D+ P+ D+++   PC  FS
Sbjct: 57 HDLPPNIDLVVGSPPCTEFS 76


>gi|83859530|ref|ZP_00953050.1| DNA-cytosine methyltransferase [Oceanicaulis alexandrii HTCC2633]
 gi|83851889|gb|EAP89743.1| DNA-cytosine methyltransferase [Oceanicaulis alexandrii HTCC2633]
          Length = 394

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDI 64
          + FCG G  RL L       +  C F+++I+      Y+ NF  +    GD+  +K  D+
Sbjct: 15 EFFCGGGMARLGL-----GAHWRCHFANDIDADKANAYRDNFGDDHFHQGDVCALKPSDL 69

Query: 65 P-DHDVLLAGFPCQPFSQAG 83
          P + D+  A FPCQ  S AG
Sbjct: 70 PGEADLAWASFPCQDLSLAG 89


>gi|303239111|ref|ZP_07325641.1| C-5 cytosine-specific DNA methylase [Acetivibrio cellulolyticus
          CD2]
 gi|302593449|gb|EFL63167.1| C-5 cytosine-specific DNA methylase [Acetivibrio cellulolyticus
          CD2]
          Length = 632

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +   ++SEI P+ ++      P    +GDI KI  
Sbjct: 5  LTLGSLFDGSGGFPLGA----LLNGIVPIWASEIEPFPIRVTTKRLPFVKHYGDIRKING 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++  G PC   S AG
Sbjct: 61 AEIEPVDIITFGSPCTDMSVAG 82


>gi|299531463|ref|ZP_07044871.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
 gi|298720626|gb|EFI61575.1| DNA-cytosine methyltransferase [Comamonas testosteroni S44]
          Length = 435

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-----GDIAKI 59
             LF G GG+ L  E+           S EI     +T ++N P   ++     GD+   
Sbjct: 121 LSLFAGGGGLDLGFERA----GFSHTASFEILDVCGETLRSNRPEWTVYSGAEAGDVRTA 176

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              +    D++  G PCQPFS AG
Sbjct: 177 PFSNFRGVDIVHGGPPCQPFSIAG 200


>gi|218441855|ref|YP_002380184.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
 gi|218174583|gb|ACK73316.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7424]
          Length = 342

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 4   ITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           + DLF G GG+ L  E Q F           ++N  + ++Y  N     +   I      
Sbjct: 33  VVDLFAGCGGLSLGFEAQGFLTIGF------DMNHDACQSYCHNLEGNCLE--IILTPET 84

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            +PD  V++   PCQPFS +G
Sbjct: 85  LLPDCRVIIGSPPCQPFSVSG 105


>gi|462647|sp|P34905|MTB1_BREBE RecName: Full=Modification methylase BbvI; Short=M.BbvI; AltName:
          Full=Cytosine-specific methyltransferase BbvI
          Length = 374

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 2  LKI--TDLFCGIGGIRLDLEQT-------FNHRNVECFFSSEINPYSVKTYQANF----P 48
          +K    +LFCG GG+ L  ++              E  ++++I+ ++ +T++ N     P
Sbjct: 1  MKFRKGELFCGPGGLALGAKEAKYMHPETGEVFEFEHAWANDIDEWACETFRTNICPDRP 60

Query: 49 NTLIFGDIAKIKT----QDIPDHDVLLAGFPCQPFSQAG 83
          ++++ GD+ ++      +   + D    GFPC  +S  G
Sbjct: 61 DSVVCGDVRELDIKSLGEKFGEIDAFTFGFPCNDYSIVG 99


>gi|157961098|ref|YP_001501132.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846098|gb|ABV86597.1| DNA-cytosine methyltransferase [Shewanella pealeana ATCC 700345]
          Length = 406

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 14/90 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIKT 61
          +  LF G GG+ + L +           S EI+  + KT + N P+  +   GDI K+  
Sbjct: 1  MISLFSGAGGLDIGLCEA----GFTNRLSVEIDEDAQKTLKLNQPSLKLATPGDIHKLTP 56

Query: 62 QDI--------PDHDVLLAGFPCQPFSQAG 83
           ++         +  +L  G PCQPFS++G
Sbjct: 57 SELLRQSGLQPKELTLLAGGPPCQPFSKSG 86


>gi|313668596|ref|YP_004048880.1| DNA cytosine methyltransferase [Neisseria lactamica ST-640]
 gi|313006058|emb|CBN87519.1| DNA cytosine methyltransferase [Neisseria lactamica 020-06]
          Length = 393

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  ++F G GG+   LE        +     E+N  +  + ++NF   L++ GD+A   
Sbjct: 1  MKSLEIFSGAGGLAKGLELA----GFQHASFIELNKDACNSLRSNFNPKLVYQGDVADFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 +V+  G PCQPFS  G
Sbjct: 57 LSSQEGIEVIAGGPPCQPFSLGG 79


>gi|59801568|ref|YP_208280.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          FA 1090]
 gi|194097887|ref|YP_002000932.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          NCCP11945]
 gi|239998362|ref|ZP_04718286.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|240113683|ref|ZP_04728173.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          MS11]
 gi|240116425|ref|ZP_04730487.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          PID18]
 gi|240117164|ref|ZP_04731226.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          PID1]
 gi|240125114|ref|ZP_04738000.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          SK-92-679]
 gi|254494438|ref|ZP_05107609.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          1291]
 gi|260441646|ref|ZP_05795462.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|268594223|ref|ZP_06128390.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|268599750|ref|ZP_06133917.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          MS11]
 gi|268602094|ref|ZP_06136261.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID18]
 gi|268602852|ref|ZP_06137019.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID1]
 gi|268683710|ref|ZP_06150572.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          SK-92-679]
 gi|291045024|ref|ZP_06570732.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|10444408|gb|AAG17898.1|AF297971_2 DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae]
 gi|59718463|gb|AAW89868.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          FA 1090]
 gi|193933177|gb|ACF29001.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          NCCP11945]
 gi|226513478|gb|EEH62823.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          1291]
 gi|268547612|gb|EEZ43030.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          35/02]
 gi|268583881|gb|EEZ48557.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          MS11]
 gi|268586225|gb|EEZ50901.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID18]
 gi|268586983|gb|EEZ51659.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          PID1]
 gi|268623994|gb|EEZ56394.1| plasmid encoded methyltransferase Pem [Neisseria gonorrhoeae
          SK-92-679]
 gi|291011027|gb|EFE03024.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          DGI2]
 gi|317163651|gb|ADV07192.1| DNA cytosine methyltransferase M.NgoMIII [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 377

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  ++F G GG+   LE        +     E+N  +  + ++NF   L++ GD+A   
Sbjct: 1  MKSLEIFSGAGGLAKGLELA----GFQHASFIELNKDACNSLRSNFNPKLVYQGDVADFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 +V+  G PCQPFS  G
Sbjct: 57 LSSQEGIEVIAGGPPCQPFSLGG 79


>gi|119503900|ref|ZP_01625982.1| putative cytosine-specific methyltransferase [marine gamma
           proteobacterium HTCC2080]
 gi|119460408|gb|EAW41501.1| putative cytosine-specific methyltransferase [marine gamma
           proteobacterium HTCC2080]
          Length = 463

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 34/112 (30%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----------NT 50
           L + DLF G GG+ L +EQ          F +E+N  +  +Y  N             + 
Sbjct: 22  LTMIDLFAGCGGLSLGMEQA----GFTPIFVNELNDDARASYLLNRDFDLKGKPFNQCHE 77

Query: 51  LIFGDIAKIKTQD-------------IPDH------DVLLAGFPCQPFSQAG 83
           L   DI ++                 I DH      D++  G PCQ +S  G
Sbjct: 78  LHSADIYELTQSRLKQLKKHLLDLGLITDHDSHTSLDLICGGPPCQGYSGIG 129


>gi|283456339|ref|YP_003360903.1| cytosine methyl transferase [Bifidobacterium dentium Bd1]
 gi|283102973|gb|ADB10079.1| dcm Cytosine methyl transferase [Bifidobacterium dentium Bd1]
          Length = 509

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G GG+ L +EQ      + C    E    +  +   N+P+  + GDI ++    +
Sbjct: 136 LSFFTGAGGLDLGMEQAGISARLLC----ENMREARMSIGVNWPDKALVGDITELDAVTV 191

Query: 65  P---------DHDVLLAGFPCQPFSQAG 83
                     + DV+  G PCQ FS AG
Sbjct: 192 RRMAGLDEDTEIDVMFGGPPCQAFSTAG 219


>gi|172037464|ref|YP_001803965.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171698918|gb|ACB51899.1| C-5 cytosine-specific DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 430

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 38/121 (31%)

Query: 1   MLKITDLFCGIGGIRLDLEQTF--------------------------NHRNVECFFSSE 34
           M ++  LF G GG+ L  E  F                          N  N +  F+++
Sbjct: 1   MKRLLSLFSGCGGMDLGFEGNFWIHEDCINETIHPNWIVKKKERWVLLNKTNFDIVFAND 60

Query: 35  INPYSVKTYQANFPNTL---IFG-----DIAKIKTQ---DIP-DHDVLLAGFPCQPFSQA 82
           I  Y+   + + F   +   IF      D+ K+      D P + D++  GFPCQ FS +
Sbjct: 61  IEKYAYNAWMSYFGKKILGKIFHLNSLVDLIKLSETGNFDFPNNIDIITGGFPCQDFSVS 120

Query: 83  G 83
           G
Sbjct: 121 G 121


>gi|171742574|ref|ZP_02918381.1| hypothetical protein BIFDEN_01687 [Bifidobacterium dentium ATCC
           27678]
 gi|171278188|gb|EDT45849.1| hypothetical protein BIFDEN_01687 [Bifidobacterium dentium ATCC
           27678]
          Length = 481

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
              F G GG+ L +EQ      + C    E    +  +   N+P+  + GDI ++    +
Sbjct: 108 LSFFTGAGGLDLGMEQAGISARLLC----ENMREARMSIGVNWPDKALVGDITELDAVTV 163

Query: 65  P---------DHDVLLAGFPCQPFSQAG 83
                     + DV+  G PCQ FS AG
Sbjct: 164 RRMAGLDEDTEIDVMFGGPPCQAFSTAG 191


>gi|241667884|ref|ZP_04755462.1| C-5 cytosine-specific DNA methylase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 457

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 37/114 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA---- 57
           +K  DLF G GG+ L           +  F+ E +P + +T+  NF    I  +I     
Sbjct: 1   MKYIDLFAGCGGLSLGF----KSEGFDLLFAVEKSPMAAETFYHNFIEK-INDNIEWSKY 55

Query: 58  -------KIKTQ---------------------DIPDHDVLLAGFPCQPFSQAG 83
                  ++ ++                      I + D+++ G PCQ FS AG
Sbjct: 56  LNKSIEEQLDSKLFVGETLTLLEKPQLLKKLKTKIGELDLIVGGPPCQGFSLAG 109


>gi|11138959|gb|AAG31558.1| SgrAIM methylase [Streptomyces griseus]
          Length = 429

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI-- 59
           K   LF G GG    +             + E++ ++  TY+ NFP   +F GD+     
Sbjct: 25  KAVSLFSGCGGFCEGVRLA----GFSVEAAVELDRFAAVTYRHNFPEVPLFEGDVHDFLN 80

Query: 60  --------KTQDIPDH-----DVLLAGFPCQPFSQAG 83
                   + +   D      D+L  G PCQ +SQ G
Sbjct: 81  DSSETWRGEAERFSDVKAGNIDLLFGGPPCQGYSQIG 117


>gi|312137784|ref|YP_004005120.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi 103S]
 gi|311887123|emb|CBH46432.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi 103S]
          Length = 387

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF GIGG+ L L         E     EI+P + +  +  F +  + GD+ ++++ 
Sbjct: 6  NMVGLFAGIGGVELGL----RSHGWETELLCEIDPGAQQVLRTRFADVELHGDVTRLRS- 60

Query: 63 DIPDH-DVLLAGFPCQPFSQAG 83
           +P   +++ AGFPCQ  SQAG
Sbjct: 61 -LPQRTELVAAGFPCQDLSQAG 81


>gi|311977248|gb|ADQ20503.1| M.BbvI [Brevibacillus brevis]
          Length = 367

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 2  LKI--TDLFCGIGGIRLDLEQT-------FNHRNVECFFSSEINPYSVKTYQANF----P 48
          +K    +LFCG GG+ L  ++              E  ++++I+ ++ +T++ N     P
Sbjct: 1  MKFRKGELFCGPGGLALGAKEAKYMHPETGEVFEFEHAWANDIDEWACETFRTNICPDRP 60

Query: 49 NTLIFGDIAKIKT----QDIPDHDVLLAGFPCQPFSQAG 83
          ++++ GD+ ++      +   + D    GFPC  +S  G
Sbjct: 61 DSVVCGDVRELDIKSLGEKFGEIDAFTFGFPCNDYSIVG 99


>gi|144575557|gb|AAZ53977.2| cytosine specific DNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 339

 Score = 81.3 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
               DLF G GG+   L             S +I   +V+TY  NF            GD
Sbjct: 15  YNFIDLFSGAGGLSCGLVMA----GFLPLASLKIMKQAVETYAYNFKKRSKNKELFKLGD 70

Query: 56  IAKIKTQ-DIPDH------DVLLAGFPCQPFSQAG 83
           I   K + +  DH      D++  GFPCQ FS AG
Sbjct: 71  IRDSKIKSEFYDHFKDQELDLIAGGFPCQGFSMAG 105


>gi|266622011|ref|ZP_06114946.1| site-specific DNA-methyltransferase [Clostridium hathewayi DSM
          13479]
 gi|288866294|gb|EFC98592.1| site-specific DNA-methyltransferase [Clostridium hathewayi DSM
          13479]
          Length = 298

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   Y     + ++P    F DI  +  
Sbjct: 4  LTHFSLFTGIGGIDLAAEAA----GFTTVCQCEWADYPTAVLEKHWPLVPRFRDITTVTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +         +  +L  GFPCQPFS  G
Sbjct: 60 EAFIEKTGRKEITLLSGGFPCQPFSSVG 87


>gi|167571686|ref|ZP_02364560.1| C-5 cytosine-specific DNA methylase [Burkholderia oklahomensis
          C6786]
          Length = 382

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L       + EC F+++ +     +Y AN+  + L   D+A +
Sbjct: 1  MYSFYEFFAGGGMARAGL-----GSDWECQFANDFDSKKAISYAANWGDDHLNSDDVAAL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
           T D+P H D+  A FPCQ  S AG
Sbjct: 56 STADLPGHVDLAWASFPCQDLSLAG 80


>gi|332367371|gb|EGJ45104.1| DNA (cytosine-5-)-methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 329

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 22/100 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---------FPNTLI 52
           +   DLF G GG+ L L        +E  F+ E N  + KT + N         +P+ L 
Sbjct: 15  MNYIDLFAGSGGLSLGLHNA----GLEGLFAIERNKDAFKTLKFNLIDKRKHFSWPDWLE 70

Query: 53  FG--DIAKIKTQDIP-------DHDVLLAGFPCQPFSQAG 83
               DI ++  +            D+++ G PCQ FS AG
Sbjct: 71  MKNWDINELLEEHSENLASLSGKVDLVVGGPPCQGFSMAG 110


>gi|145346921|ref|XP_001417930.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578158|gb|ABO96223.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 820

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G+GG+ L L+Q  +          E + +  +   A FP   +  D+A++  
Sbjct: 4  LRVASLFSGVGGLDLGLQQAGH----RIELMVERDAHCKQVLSARFPGVALLNDVAEVLP 59

Query: 62 QDIPDHDVLLAGFPCQPFS 80
            + + D ++AGFPC   S
Sbjct: 60 FMLENIDCVVAGFPCNDCS 78


>gi|309380076|emb|CBX21487.1| putative DNA cytosine methyltransferase [Neisseria lactamica
          Y92-1009]
          Length = 377

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +K  ++F G GG+   LE        +     E+N  +  + ++NF   L++ GD+A   
Sbjct: 1  MKSLEIFSGAGGLAKGLELA----GFQHASFIELNKDACNSLRSNFNPKLVYQGDVADFD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 +V+  G PCQPFS  G
Sbjct: 57 LSSQEGIEVIAGGPPCQPFSLGG 79


>gi|283956744|ref|ZP_06374220.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
          jejuni 1336]
 gi|283791719|gb|EFC30512.1| hypothetical protein C1336_000290019 [Campylobacter jejuni subsp.
          jejuni 1336]
          Length = 330

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
              DLF G GG  L   ++          S + NP    +Y+ NF     I  DI    
Sbjct: 4  YNTLDLFSGAGGFSLGFLKSGA---FNILLSIDNNPKLSISYEKNFDFIKHINRDILSFS 60

Query: 61 TQDIPD------HDVLLAGFPCQPFSQAG 83
           +DI         +V++ G PCQ FS AG
Sbjct: 61 DKDIQKLQQKYNFEVIIGGPPCQGFSLAG 89


>gi|256810753|ref|YP_003128122.1| DNA-cytosine methyltransferase [Methanocaldococcus fervens AG86]
 gi|256793953|gb|ACV24622.1| DNA-cytosine methyltransferase [Methanocaldococcus fervens AG86]
          Length = 310

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + + DLF G GG                  + E     VKTY  N    +   DI +I  
Sbjct: 1  MNVIDLFSGCGGFSKGF----LDEKFRILGAIENFKPVVKTYLYNIKAPVWMDDIKRIPP 56

Query: 62 QDI------PDHDVLLAGFPCQPFSQA 82
          +           DV++   PC+PF++A
Sbjct: 57 KAFDEFIKNEKVDVIIGSPPCEPFTKA 83


>gi|213403582|ref|XP_002172563.1| tRNA (cytosine-5-)-methyltransferase [Schizosaccharomyces
          japonicus yFS275]
 gi|212000610|gb|EEB06270.1| tRNA (cytosine-5-)-methyltransferase [Schizosaccharomyces
          japonicus yFS275]
          Length = 326

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L++   + + +   + +INP + + Y  NF       DI+ +  
Sbjct: 8  LRVLELYSGIGGMHFALQKL--NIDFKVVLAVDINPLANQIYNENFGKIAKHYDISTLTK 65

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
          + +     D+      CQP+++ G
Sbjct: 66 EQLDALRCDLWTLSPSCQPYTRLG 89


>gi|146309050|ref|YP_001189515.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
 gi|145577251|gb|ABP86783.1| DNA-cytosine methyltransferase [Pseudomonas mendocina ymp]
          Length = 365

 Score = 81.0 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          ML + DLF G GG+ L  +Q           + +I+P    ++  NFP+      D+  +
Sbjct: 1  MLTLLDLFSGCGGLTLGAKQA----GFTTELAVDIDPILSSSFGLNFPSVPFLNADVTTL 56

Query: 60 KTQDIP-----DHDVLLAGFPCQPFSQAG 83
           +  +        D ++ G PCQ FS  G
Sbjct: 57 TSDRLKALLPSGVDGVIGGPPCQAFSGMG 85


>gi|307704025|ref|ZP_07640957.1| cytosine methyl transferase [Streptococcus mitis SK597]
 gi|307622416|gb|EFO01421.1| cytosine methyl transferase [Streptococcus mitis SK597]
          Length = 351

 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +KI   DLFCGIGG+   ++Q      +      +I+  S   Y+ N     IF D+ +I
Sbjct: 1  MKINAVDLFCGIGGLTYGIQQA----GINVVAGYDIDEKSKFAYEYNNGAKFIFKDVREI 56

Query: 60 KTQDI-----PDHD--VLLAGFPCQPFS 80
          +  +I     PD D  VL+   PCQPFS
Sbjct: 57 EDNEILGLYPPDTDIKVLIGCAPCQPFS 84


>gi|296453364|ref|YP_003660507.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          longum JDM301]
 gi|296182795|gb|ADG99676.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          longum JDM301]
          Length = 392

 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIK 60
           + F GIG  RL LE+       +  +S++I+    + Y+ NF     +TL+ GD++++ 
Sbjct: 18 LEFFAGIGLARLGLEEA----GFQVEWSNDIDAAKCEMYRNNFTDTPGHTLVEGDMSELS 73

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D+P D  +     PC   S AG
Sbjct: 74 GDDLPHDASIAWGSSPCTDLSLAG 97


>gi|225691140|gb|ACO06242.1| 5'-methylcytosine methyltransferase M.BbrI [Bifidobacterium breve
          UCC2003]
          Length = 392

 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIK 60
           + F GIG  RL LE+       +  +S++I+    + Y+ NF     +TL+ GD++++ 
Sbjct: 18 LEFFAGIGLARLGLEEA----GFQVEWSNDIDAAKCEMYRNNFTDTPGHTLVEGDMSELS 73

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D+P D  +     PC   S AG
Sbjct: 74 GDDLPHDASIAWGSSPCTDLSLAG 97


>gi|190892898|ref|YP_001979440.1| DNA-cytosine methyltransferase [Rhizobium etli CIAT 652]
 gi|190698177|gb|ACE92262.1| putative DNA-cytosine methyltransferase protein [Rhizobium etli
           CIAT 652]
          Length = 638

 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
            + ++  G GG+ + LE+       E     E + Y+  T + N P+ T+I  D+ K+  
Sbjct: 281 TVVEICAGAGGMSIGLERA----GFEHIALIEYDKYAAATLRRNRPDWTVIKEDLRKMDF 336

Query: 62  QDIP--DHDVLLAGFPCQPFSQAG 83
           +     + D++  G PCQP+S  G
Sbjct: 337 KLYRQLEIDLVSGGPPCQPYSSDG 360


>gi|220924842|ref|YP_002500144.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219949449|gb|ACL59841.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 361

 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          +K  + DLFCG GG+ L           +   S +I+     +Y+ N P   L   D+A 
Sbjct: 1  MKPVVVDLFCGCGGLSLGARNA----GFKIGLSVDIDAVLTSSYKENHPGAHLRLMDVAA 56

Query: 59 IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          +   D+        D ++ G PCQ FS+ G
Sbjct: 57 LTGSDVRTVVGGRVDGIIGGPPCQGFSEIG 86


>gi|257877765|ref|ZP_05657418.1| cytosine specific DNA methyltransferase [Enterococcus
          casseliflavus EC20]
 gi|257811931|gb|EEV40751.1| cytosine specific DNA methyltransferase [Enterococcus
          casseliflavus EC20]
          Length = 380

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----------FPNTLI 52
          + DLF G GG+     Q       +     + +  +++TY  N           F     
Sbjct: 7  VIDLFSGAGGLSQGFVQA----GFDVLAGIDFDDAALRTYGHNIKGAKALKEDLFDEEKS 62

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            DI K       + DV++AG PCQ FS  G
Sbjct: 63 IRDIEKNLANK--NIDVIIAGPPCQGFSLTG 91


>gi|322418052|ref|YP_004197275.1| DNA-cytosine methyltransferase [Geobacter sp. M18]
 gi|320124439|gb|ADW11999.1| DNA-cytosine methyltransferase [Geobacter sp. M18]
          Length = 385

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA----------NFPNTL 51
          ++  +LF G GG+ + L     H  +      E N  + +T             ++P   
Sbjct: 1  MRSVELFSGCGGLAMGLSLAGFHHELMV----EWNTNACETLAHNKKKKVNHVKSWP--F 54

Query: 52 IFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            GD+ +I   DI    D++  G PCQPFS  G
Sbjct: 55 KKGDVREINWTDIRRPIDLVAGGPPCQPFSIGG 87


>gi|22256926|sp|O33481|MTP1_PSYTA RecName: Full=Modification methylase PspPI; Short=M.PspPI; AltName:
           Full=Cytosine-specific methyltransferase PspPI
 gi|2558610|emb|CAA68841.1| type II DNA m5C-methyltransferase [Psychrobacter sp.]
          Length = 416

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFS 80
                +    +E + Y+  T +AN PN  +I  DI  +    +    D+L  GFPCQPFS
Sbjct: 94  EQAGFKSVLLNEKDKYACATLRANRPNWNVIEDDIENVDFTHLNGKVDLLTGGFPCQPFS 153

Query: 81  QAG 83
            AG
Sbjct: 154 YAG 156


>gi|325955715|ref|YP_004293189.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
 gi|325334695|gb|ADZ08248.1| modification methylase BsuRI [Lactobacillus acidophilus 30SC]
          Length = 406

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 26/106 (24%)

Query: 2   LKITDLFCGIGGIRLDLE--QTFNHRNVE--------------------CFFSSEINPYS 39
           + +  LF G GG+ L +E         V+                      +S+++   +
Sbjct: 58  INVLSLFSGAGGLDLGVEIAAASAKHGVDKTYTAFQNRRELSKLLDSTNVIYSNDLFASA 117

Query: 40  VKTYQANFPNTLIFG--DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             TY+ NF    +    D+ K+ +   P  D++L GFPC  FS AG
Sbjct: 118 NATYKDNFSGNYVKDTRDVRKVIS--FPKADLVLGGFPCPGFSVAG 161


>gi|209525305|ref|ZP_03273847.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
 gi|209494320|gb|EDZ94633.1| DNA-cytosine methyltransferase [Arthrospira maxima CS-328]
          Length = 342

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----AKI 59
           + DLF G GG  L  +        E     E+   +  TY  N        DI       
Sbjct: 27  VLDLFAGCGGFSLGFKAA----GFETIGY-EMLADAAATYTRN------LQDICYCQTLE 75

Query: 60  KTQDIPDH-DVLLAGFPCQPFSQAG 83
             QD+ +H DV++ G PCQPFS  G
Sbjct: 76  IGQDLCNHPDVIIGGPPCQPFSVGG 100


>gi|167042310|gb|ABZ07039.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
          crenarchaeote HF4000_ANIW97J3]
          Length = 380

 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 4  ITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDI----- 56
          + DLF G GG+          +       +++ + ++  TY+ N P    + GDI     
Sbjct: 7  VLDLFSGPGGLSEGFNTAKIGNHTFRSVVANDNDVHASVTYRKNHPGVEFVLGDISASEI 66

Query: 57 -----AKIKTQD-IPDHDVLLAGFPCQPFSQ 81
                 IK +  +   DV++ G PC+ FS 
Sbjct: 67 KRKIVRAIKAETGMNTVDVIIGGPPCKGFSL 97


>gi|166368724|ref|YP_001660997.1| cytosine-specific methyltransferase [Microcystis aeruginosa
          NIES-843]
 gi|166091097|dbj|BAG05805.1| cytosine-specific methyltransferase [Microcystis aeruginosa
          NIES-843]
          Length = 189

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+   DLF G GG+ L  ++           + +    ++  Y+ NF + +   D+++  
Sbjct: 1  MIT-IDLFAGCGGLSLGFQKA----GFTIVAAFDNWIPAIDVYRNNFSHPIFNVDLSRES 55

Query: 61 TQDI---PDHDVLLAGFPCQPFSQAG 83
          +Q+I    + ++++   PCQ FS AG
Sbjct: 56 SQEIFAQYNPEIIVGSPPCQDFSSAG 81


>gi|307825806|ref|ZP_07656022.1| DNA-cytosine methyltransferase [Methylobacter tundripaludum SV96]
 gi|307733114|gb|EFO03975.1| DNA-cytosine methyltransferase [Methylobacter tundripaludum SV96]
          Length = 359

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIK 60
           DLF G GG  L       +   +   + EIN ++  TY+ N        L   +I ++ 
Sbjct: 9  IDLFAGAGGFSL----AAKNVGFKVSAAIEINNHACTTYRQNLIEGNSTKLYQKNILELA 64

Query: 61 TQDIPD--------HDVLLAGFPCQPFSQ 81
           ++I           D++L G PCQ FS 
Sbjct: 65 PEEIKHAHFMDGAVCDIVLGGPPCQGFSV 93


>gi|228473386|ref|ZP_04058140.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
          gingivalis ATCC 33624]
 gi|228275288|gb|EEK14086.1| Cytosine-specific methyltransferase HphIA [Capnocytophaga
          gingivalis ATCC 33624]
          Length = 358

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   D+F G GG+ L  E       ++  +  EINP + K++  N     ++ GDI  I
Sbjct: 1  MLYGIDIFSGAGGLSLGAEMA----GIQICYGIEINPSAAKSFTRNHKGAKVLQGDIKDI 56

Query: 60 KTQDIPD-HD---VLLAGFPCQPFSQ 81
              + +  D   +++ G PCQ FS 
Sbjct: 57 DPSKLKEGIDPVFIIMGGPPCQGFSL 82


>gi|318604073|emb|CBY25571.1| DNA-cytosine methyltransferase [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 383

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
          +K  + F G+G IR  L  +      +C ++++I+   + TY AN+        DI K+ 
Sbjct: 1  MKFAEFFAGVGLIREGLSSS----GWKCVWANDISADKMATYVANYGEEHFHLEDIWKVA 56

Query: 61 TQD---IPDHDVL-LAGFPCQPFSQAG 83
                +P+   L  A FPC   S AG
Sbjct: 57 ANPGAILPEGVFLYTASFPCTDLSVAG 83


>gi|26325124|dbj|BAC26316.1| unnamed protein product [Mus musculus]
          Length = 415

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALRKS--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLS--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + D D     ++L   PCQPF++ G
Sbjct: 60 ISLEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|325679553|ref|ZP_08159133.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
 gi|324108840|gb|EGC03076.1| DNA (cytosine-5-)-methyltransferase [Ruminococcus albus 8]
          Length = 708

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK---- 58
           + DLF G GG    +E+   + +     + + N  +++T++ N P+T ++ GDI      
Sbjct: 351 VLDLFSGAGGFSYGIEK---NEHFRTAIALDFNEQALQTFKHNMPDTEIVHGDITDSAVK 407

Query: 59  ---IKTQDIPDHDVLLAGFPCQPFSQAG 83
              I        ++++ G PCQ FS  G
Sbjct: 408 ERIISLSKEKKVNMVIGGPPCQGFSLKG 435


>gi|291335050|gb|ADD94680.1| cytosine specific DNA methyltransferase DDEM [uncultured phage
           MedDCM-OCT-S08-C620]
          Length = 129

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
             +   F G GG  L              +++E    + +TY+AN PN+++   D+ +I+
Sbjct: 29  FNVVSTFSGCGGSCLGYRMA----GYRVLYANEFIKAAQETYKANHPNSILDSNDVRQIR 84

Query: 61  TQDI--------PDHDVLLAGFPCQPFSQAG 83
            ++I         + D+     PC  FS +G
Sbjct: 85  PEEILERINLKKGELDLFDGSPPCASFSISG 115


>gi|331090172|ref|ZP_08339060.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330402118|gb|EGG81690.1| hypothetical protein HMPREF1025_02643 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 681

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +   ++SEI P+ ++      P    +GD++++  
Sbjct: 6  LTLGSLFDGSGGFPLG----GLISGITPVWASEIEPFPIRVTTKRLPFMKHYGDVSRMDG 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            I   D++  G PCQ  S AG
Sbjct: 62 GKIEPVDIITFGSPCQDMSIAG 83


>gi|327535475|gb|AEA94309.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis OG1RF]
          Length = 363

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF---FSSEINPYSVKTYQANF----PNTLIFG 54
           K+ +LFCG GGI L    + +   +      ++++ +  + +TY  N     P T+I  
Sbjct: 3  FKLGELFCGPGGIALGAMTSQSDDGIYKIDHAWANDFDKDTCQTYINNICPEKPETVICE 62

Query: 55 DIAKIKTQD---IPDHDVLLAGFPCQPFSQAG 83
          DI K+  +    I D D L  GFPC  FS  G
Sbjct: 63 DIRKLDFRKLKRISDIDGLAFGFPCNDFSIVG 94


>gi|237731054|ref|ZP_04561535.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
 gi|226906593|gb|EEH92511.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
          Length = 411

 Score = 80.6 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
              + F G G  R  L          C F+++++P    TY  N+        D+ +I 
Sbjct: 20 FSFYEFFAGGGMARAGL-----GNPWRCLFANDMDPIKASTYIDNWGGEHFDTRDVREIP 74

Query: 61 TQDIPDH-DVLLAGFPCQPFSQAG 83
          + D+P H D+  A FPCQ  S AG
Sbjct: 75 SNDLPRHADLTWASFPCQDLSLAG 98


>gi|169834659|ref|YP_001693426.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169123207|gb|ACA47042.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 490

 Score = 80.2 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L +  +F G G +           + +  F+ + +  + +TY  N  + ++  DI+K+ +
Sbjct: 176 LTVCSIFSGAGLMDKSF-----LDDFDIIFALDNDRAACETYGKNLGSHILHEDISKV-S 229

Query: 62  QDIPDHDVLLAGFPCQPFS 80
            +IP   VL+ G PCQ FS
Sbjct: 230 NNIPHATVLIGGSPCQGFS 248


>gi|325675056|ref|ZP_08154742.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554017|gb|EGD23693.1| DNA (cytosine-5-)-methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 398

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +  LF GIGG+ L L         E     EI+P + +  +  F    + GD+ ++++ 
Sbjct: 17 NMVGLFAGIGGVELGL----RSHGWETELLCEIDPGAQQVLRTRFAGVELHGDVTRLRS- 71

Query: 63 DIPDH-DVLLAGFPCQPFSQAG 83
           +P   +++ AGFPCQ  SQAG
Sbjct: 72 -LPQRTELVAAGFPCQDLSQAG 92


>gi|294463393|gb|ADE77228.1| unknown [Picea sitchensis]
          Length = 380

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ + + GIGG+R  LEQ+  H   +   + +IN  + + Y+ NF ++   G+I  +  
Sbjct: 12 FRVLEFYSGIGGMRFSLEQSGIHA--KVVEAFDINNIANEVYKHNFGHSPYQGNIQSLTA 69

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
            +     +  L   PCQP+++ G
Sbjct: 70 SQLDKFRANAWLLSPPCQPYTRQG 93


>gi|218884576|ref|YP_002428958.1| Cytosine-specific DNA methylase [Desulfurococcus kamchatkensis
          1221n]
 gi|218766192|gb|ACL11591.1| Cytosine-specific DNA methylase [Desulfurococcus kamchatkensis
          1221n]
          Length = 324

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           K  D+F G GG  L    T      +   + +    +  TY+ NFP+ L+   D+ ++ 
Sbjct: 5  YKYIDVFSGAGGFSLGFHLTGR---FKSLLAIDNFKPAALTYKTNFPHALVVNEDVKELD 61

Query: 61 TQDI-----PD-HDVLLAGFPCQPFSQA 82
           + +     PD  DV++   PC+PF+ A
Sbjct: 62 KELLTGIVKPDEIDVIIGSPPCEPFTGA 89


>gi|53728781|ref|ZP_00135132.2| COG0270: Site-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 354

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--- 57
          M     +  GI      +   +     +  + SEI P+       ++P+    GD+    
Sbjct: 1  MFTYGSICSGI----EAVSVAWKGIG-KPVWFSEIEPFPCAVLAYHYPDIPNLGDMTALV 55

Query: 58 -KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 56 PKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|293392447|ref|ZP_06636769.1| site-specific DNA methylase [Serratia odorifera DSM 4582]
 gi|291425101|gb|EFE98308.1| site-specific DNA methylase [Serratia odorifera DSM 4582]
          Length = 379

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           + F GIG  R  +EQ      ++  ++++ +      Y+ ++  + L+  DI  +K++D
Sbjct: 15 LEFFAGIGLSRAGMEQA----GIKTIWANDYDQNKKSMYEGHWKSHELLLADIHALKSED 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  DV  A  PC   S AG
Sbjct: 71 LPAADVAWASSPCTDLSLAG 90


>gi|188533112|ref|YP_001906909.1| C-5 cytosine-specific DNA methylase family protein [Erwinia
          tasmaniensis Et1/99]
 gi|188028154|emb|CAO96012.1| C-5 cytosine-specific DNA methylase family protein [Erwinia
          tasmaniensis Et1/99]
          Length = 395

 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 18/90 (20%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDIAK 58
           DLF G GG  L          +E   + E++  +  TY  N          LI  DI  
Sbjct: 13 IDLFSGAGGFSL----AALELGIEILAAIELDKDACDTYDKNLIQKRKNNIKLINKDIIA 68

Query: 59 IKTQDI--------PDHDVLLAGFPCQPFS 80
          I   ++         + D+++ G PCQ FS
Sbjct: 69 IPPSELMDSLHLKERELDLIIGGPPCQGFS 98


>gi|302531731|ref|ZP_07284073.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302440626|gb|EFL12442.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 357

 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAKIKT 61
            +F G+GG+ L  E+       E   + E +  +  T + NFP+   ++I  DI  + T
Sbjct: 8  ISVFSGVGGLDLGAEKA----GFEVRAAVERDVNAADTMRKNFPHLAGSVICADILDVPT 63

Query: 62 QDI---------PDHDVLLAGFPCQPFSQAG 83
           +I            D+L+ G PC PFS++G
Sbjct: 64 TEIMAAAGLSRRERPDLLIGGPPCTPFSKSG 94


>gi|307595752|ref|YP_003902069.1| DNA-cytosine methyltransferase [Vulcanisaeta distributa DSM
          14429]
 gi|307550953|gb|ADN51018.1| DNA-cytosine methyltransferase [Vulcanisaeta distributa DSM
          14429]
          Length = 321

 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            + DLF G GG              +     E++  + +T+  NFP   +I  DI  + 
Sbjct: 3  YTVVDLFAGAGGFSRGF----KDVGFDVALGVEVDINAARTFSYNFPEAVMITDDIRNVS 58

Query: 61 TQDIPDH-----DVLLAGFPCQPFSQ 81
           +DI  +     DV++ G PC+ F++
Sbjct: 59 GKDIIKYIGGRPDVIIGGSPCEAFTE 84


>gi|154173655|ref|YP_001409100.1| cytosine-specific methyltransferase NlaX [Campylobacter curvus
          525.92]
 gi|112802981|gb|EAU00325.1| cytosine-specific methyltransferase NlaX (M.NlaX) [Campylobacter
          curvus 525.92]
          Length = 352

 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDIP 65
          F GIG       + F     +  F+ EI+ ++ ++Y AN          +I ++  +   
Sbjct: 12 FSGIGSAEFAAREVF--AEYDMAFACEIDKFARQSYLANHAIDEKHFHCNIKELDAKIYT 69

Query: 66 D-HDVLLAGFPCQPFSQAG 83
          D  DVL+ G PCQ FS AG
Sbjct: 70 DKVDVLIGGSPCQDFSLAG 88


>gi|145593130|ref|YP_001157427.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
 gi|145302467|gb|ABP53049.1| DNA-cytosine methyltransferase [Salinispora tropica CNB-440]
          Length = 652

 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 13/87 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------IAK 58
            DLF G GG+ L L +           +++ +P SV+T++ ++P   +  D      I +
Sbjct: 54  ADLFSGAGGLSLGLTEA----GFRVVLAADRDPESVETHRHHYPGLTLDYDLGESANIRR 109

Query: 59  IKT--QDIPDHDVLLAGFPCQPFSQAG 83
           I    ++    ++L  G PCQPFS+AG
Sbjct: 110 IAALVKE-AGIELLTGGPPCQPFSRAG 135


>gi|269792571|ref|YP_003317475.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
          DSM 6589]
 gi|269100206|gb|ACZ19193.1| DNA-cytosine methyltransferase [Thermanaerovibrio acidaminovorans
          DSM 6589]
          Length = 350

 Score = 80.2 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF---FSSEINPYSVKTYQANF----PNTLIFG 54
           ++ +LFCG GG+        +          ++++ +  + +TY+ N     P ++   
Sbjct: 3  YRLGELFCGPGGLAYGAINARSADGKHFIVHEWANDYDKDTCETYRYNICPDRPESVYHE 62

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI K+    +   D L  GFPC  FS  G
Sbjct: 63 DIRKLNMDKLTPIDALAFGFPCNDFSVVG 91


>gi|302876802|ref|YP_003845435.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687485|ref|ZP_07629931.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579659|gb|ADL53671.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 363

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGD 55
              DLF G GG+             +     + +  ++KT++AN          L   D
Sbjct: 5  FTCVDLFSGAGGLSRGF----YDAGYDVVLGVDFDDAALKTFKANHGTAESMKLDLFNHD 60

Query: 56 IAKIKTQDIPD----HDVLLAGFPCQPFSQAG 83
             +    + +     DVL+ G PCQ FS AG
Sbjct: 61 NIDVIVDYLAEKNIQLDVLVGGPPCQGFSIAG 92


>gi|195996059|ref|XP_002107898.1| hypothetical protein TRIADDRAFT_49657 [Trichoplax adhaerens]
 gi|190588674|gb|EDV28696.1| hypothetical protein TRIADDRAFT_49657 [Trichoplax adhaerens]
          Length = 254

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          +++ + + GIGG+   L+++  + N +   + +IN  +   Y+ NF NT ++  +I KI 
Sbjct: 9  MQVVEFYSGIGGMHYALQES--NINAKILAAIDINTVANNVYRHNFGNTPVWQREIGKIS 66

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
           +++ +   D+     PCQPF++ G
Sbjct: 67 LKELQELNGDLYTMSPPCQPFTRLG 91


>gi|153932387|ref|YP_001385110.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153937602|ref|YP_001388579.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152928431|gb|ABS33931.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152933516|gb|ABS39015.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
          Length = 350

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-FNHRNVECF--FSSEINPYSVKTYQANF----PNTLIF 53
          + ++ +LFCG GG+    +     +   +    ++++ +  +  TY  N     P ++I 
Sbjct: 2  IFQLGELFCGPGGLGYGAKTAEIKNNKYKIVHKWANDYDRDTCDTYIHNICPDDPESVIC 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           D+ K+    +   D L  GFPC  FS  G
Sbjct: 62 QDVRKLDIDSLESIDALAFGFPCNDFSVVG 91


>gi|296448772|ref|ZP_06890624.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
 gi|296253709|gb|EFH00884.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
          Length = 297

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K   LF GIGG+ L L +  +    EC   +E  P +     A FP     GDIA ++ 
Sbjct: 1  MKTVGLFAGIGGLELGLARAGH----ECLLVAENWPLAAGVLAARFPGLPNAGDIASLRR 56

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
            +P   +++ AGFPCQ  SQAG
Sbjct: 57 --LPGGTELVAAGFPCQDLSQAG 77


>gi|241661827|ref|YP_002980187.1| DNA-cytosine methyltransferase [Ralstonia pickettii 12D]
 gi|240863854|gb|ACS61515.1| DNA-cytosine methyltransferase [Ralstonia pickettii 12D]
          Length = 398

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 21/94 (22%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------------FPNT 50
            DLF G GG  L   +      +    + E++  + +TY AN              +   
Sbjct: 42  VDLFAGAGGFSLAAHKA----GMRVVAAVELDKKASETYHANLIKRRKKVSDRPRLYSEN 97

Query: 51  LIFGDIAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
           ++     + K+++ P+    D++L G PCQ FS 
Sbjct: 98  IMELSPERFKSENFPEGASCDIVLGGPPCQGFSV 131


>gi|70734372|ref|YP_260119.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348671|gb|AAY96277.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 394

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L+  + F G G  R  L         +C F+++++     TY  N+  +     DI ++ 
Sbjct: 5  LRFFEFFAGGGMARAGL-----GNQWQCLFANDMDRIKASTYIQNWGKDHFDSRDIREVN 59

Query: 61 TQDI-PDHDVLLAGFPCQPFSQAG 83
          ++D+  + D+  A FPCQ  S AG
Sbjct: 60 SEDLERNGDLAWASFPCQDLSVAG 83


>gi|26341152|dbj|BAC34238.1| unnamed protein product [Mus musculus]
          Length = 415

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLS--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + D D     ++L   PCQPF++ G
Sbjct: 60 ISLEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|2895947|gb|AAC40130.1| putative DNA cytosine methyltransferase DNMT2 [Mus musculus]
          Length = 415

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLS--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + D D     ++L   PCQPF++ G
Sbjct: 60 ISLEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|161016803|ref|NP_034197.3| tRNA (cytosine-5-)-methyltransferase [Mus musculus]
 gi|20141317|sp|O55055|TRDMT_MOUSE RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2; AltName: Full=DNA methyltransferase
          homolog MmuIIP; Short=DNA MTase homolog MmuIIP;
          Short=M.MmuIIP; AltName: Full=Met-2
 gi|2627433|gb|AAC53529.1| putative DNA methyltransferase [Mus musculus]
 gi|56971714|gb|AAH87892.1| TRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|123857912|emb|CAM15443.1| tRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|123858289|emb|CAM16855.1| tRNA aspartic acid methyltransferase 1 [Mus musculus]
 gi|148676105|gb|EDL08052.1| DNA methyltransferase 2 [Mus musculus]
          Length = 415

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++  H       + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALRES--HIPAHVVAAIDVNTVANEVYKHNFPHTHLLS--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + D D     ++L   PCQPF++ G
Sbjct: 60 ISLEDFDKLSFNMILMSPPCQPFTRIG 86


>gi|229825108|ref|ZP_04451177.1| hypothetical protein GCWU000182_00458 [Abiotrophia defectiva ATCC
          49176]
 gi|331003746|ref|ZP_08327240.1| hypothetical protein HMPREF0491_02102 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|229790480|gb|EEP26594.1| hypothetical protein GCWU000182_00458 [Abiotrophia defectiva ATCC
          49176]
 gi|330412129|gb|EGG91524.1| hypothetical protein HMPREF0491_02102 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 305

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +     + ++P    F DI  +  
Sbjct: 4  LTHFSLFTGIGGIDLAAEAA----GFSTICQCEWADFPTAVLKKHWPKVPRFQDITTVTK 59

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          +            ++  GFPCQPFS  G
Sbjct: 60 EAFIEKTGQESVTLISGGFPCQPFSAIG 87


>gi|154508844|ref|ZP_02044486.1| hypothetical protein ACTODO_01354 [Actinomyces odontolyticus ATCC
          17982]
 gi|153798478|gb|EDN80898.1| hypothetical protein ACTODO_01354 [Actinomyces odontolyticus ATCC
          17982]
          Length = 355

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 22/99 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----------AN----F 47
          +++  L+ G GG+ L   +          FS++IN  +V TY+           N    F
Sbjct: 1  MRLISLYSGAGGLDLGFAKA----GFIPVFSADINRDAVDTYRTISKAVQGEWKNAAVLF 56

Query: 48 PNT-LIFGDIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
           N  +  GD+   ++ D+   D ++++ G PCQ FS  G
Sbjct: 57 ENCDVRCGDV-LAESNDLSAGDAEIVIGGPPCQGFSVGG 94


>gi|293395454|ref|ZP_06639738.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
 gi|291422138|gb|EFE95383.1| modification methylase HgiDII [Serratia odorifera DSM 4582]
          Length = 354

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ- 62
           D FCG GG    L Q       +     +++  + +TY+ANFP+   IF DI  +  + 
Sbjct: 4  IDFFCGCGGASEGLRQA----GFDVVLGIDVDQQASETYKANFPDADFIFDDIRNVTVER 59

Query: 63 -----DIPDHDVLL--AGFPCQPFSQ 81
                    D LL  A  PCQPFSQ
Sbjct: 60 VANSIAFKSADGLLLSACAPCQPFSQ 85


>gi|325564098|gb|ADZ31419.1| M.SfoI [Serratia fonticola]
          Length = 385

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI- 59
          ++  + F G+G +R  LE        +C ++++I+   + TY  N+  +     DI K+ 
Sbjct: 1  MRFAEFFAGVGLVREGLE----GSGWQCVWANDISADKMSTYVENYGDDHFHLEDIWKVA 56

Query: 60 -KTQDIPDHDVLL--AGFPCQPFSQAG 83
           +   I   DV L  A FPC   S AG
Sbjct: 57 AEPDGILPKDVFLYTASFPCTDLSVAG 83


>gi|323139578|ref|ZP_08074623.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322395197|gb|EFX97753.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 381

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
          M    + F G G  R  L          C F+++ +     +YQAN+     L+ GD+ K
Sbjct: 1  MPDFYEFFAGGGMARKGL-----GAGWTCQFANDFDHKKALSYQANWGTGGELLVGDVRK 55

Query: 59 IKTQDIPDH-DVLLAGFPCQPFS 80
          +    +P   D++   FPCQ  S
Sbjct: 56 VTASQLPGCADLIWGSFPCQDLS 78


>gi|229844460|ref|ZP_04464600.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          6P18H1]
 gi|229812709|gb|EEP48398.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          6P18H1]
          Length = 387

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M     +  GI      +   +     +  + SEI P+       ++PN    GD+  + 
Sbjct: 1  MFTYGSICSGI----EAVSVAWKGLG-KPLWFSEIEPFPCAVLAYHYPNIPNLGDMTTLP 55

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    +IP  DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|240119361|dbj|BAH79224.1| methylase EcoO109IM [Escherichia coli O157:H7]
          Length = 414

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K   LF G  G+ L LE+       E     E +  ++KT + N PN  +F G I     
Sbjct: 5  KFISLFSGAMGLDLGLEEA----GFELVACVEQDKAALKTIKTNKPNLAVFEGSIVDCTG 60

Query: 62 QDI---------PDHDVLLAGFPCQPFSQAG 83
           ++          + D++  G PCQ FS  G
Sbjct: 61 SELLALAGVNDKEEIDLVAGGPPCQAFSVFG 91


>gi|6318608|gb|AAF06965.1|AF157599_4 EcoO109IM [Escherichia coli]
          Length = 414

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K   LF G  G+ L LE+       E     E +  ++KT + N PN  +F G I     
Sbjct: 5  KFISLFSGAMGLDLGLEEA----GFELVACVEQDKAALKTIKTNKPNLAVFEGSIVDCTG 60

Query: 62 QDI---------PDHDVLLAGFPCQPFSQAG 83
           ++          + D++  G PCQ FS  G
Sbjct: 61 SELLALAGVNDKEEIDLVAGGPPCQAFSVFG 91


>gi|42779446|ref|NP_976693.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
 gi|42735362|gb|AAS39301.1| DNA-cytosine methyltransferase family protein [Bacillus cereus
          ATCC 10987]
          Length = 350

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLD-LEQTFNHRNVECF--FSSEINPYSVKTYQANF----PNTLIF 53
          + ++ +LFCG GGI    +  +    N      ++++ +  + +TY+ N     PNT+  
Sbjct: 2  IFRLGELFCGPGGIAWGAMNASIEDPNFAIVHQWANDYDADTCETYRLNICPDTPNTVYH 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI K     +   D L  GFPC  +S  G
Sbjct: 62 ADIRKFDMSKLAPIDALAFGFPCNDYSVVG 91


>gi|222053814|ref|YP_002536176.1| DNA-cytosine methyltransferase [Geobacter sp. FRC-32]
 gi|221563103|gb|ACM19075.1| DNA-cytosine methyltransferase [Geobacter sp. FRC-32]
          Length = 381

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M    + F G G  R+ L      +  EC F+++ +P    +Y+  F   +  +  D+AK
Sbjct: 1  MKTFYEFFAGGGMARIGL-----GKGWECVFANDFDPKKAISYRTYFRGNDHFVVEDVAK 55

Query: 59 IKTQD-IPDHDVLLAGFPCQPFSQAG 83
          I+T   +   D+  A FPCQ  S AG
Sbjct: 56 IQTSQLLGTADLTWASFPCQDLSLAG 81


>gi|283466067|emb|CBG92842.1| hypothetical protein [Enterococcus casseliflavus]
          Length = 359

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD+ K+  
Sbjct: 7  LTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGDLTKLHG 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP  D++  G PCQ  S  G
Sbjct: 63 GKIPPVDIVTFGSPCQNLSTIG 84


>gi|198430517|ref|XP_002128135.1| PREDICTED: similar to DNA methyltransferase 2 [Ciona
          intestinalis]
          Length = 343

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          LK+ +L+ GIGG+   L    N +N E   S +I+P +   Y+ NFP T  +   I    
Sbjct: 5  LKVLELYSGIGGMHYALLGA-NLKNCEVVCSVDISPAASLVYKHNFPGTKHWERSIEGFS 63

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           +D  +   + L+   PCQPF++ G
Sbjct: 64 AKDFDNMGFNTLMMSPPCQPFTRVG 88


>gi|291618481|ref|YP_003521223.1| Bsp6IM [Pantoea ananatis LMG 20103]
 gi|291153511|gb|ADD78095.1| Bsp6IM [Pantoea ananatis LMG 20103]
          Length = 384

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           + F GIG  R  +EQ      ++  ++++ +      Y+ ++ +   +  DI  +K+++
Sbjct: 15 LEFFAGIGLARAGMEQA----GIKTVWANDYDVNKKAMYEGHWQSADFLLADIHSLKSEE 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD DV  A  PC   S AG
Sbjct: 71 LPDADVAWASSPCTDLSLAG 90


>gi|189404646|ref|ZP_02809925.2| modification methylase SinI [Escherichia coli O157:H7 str. EC869]
 gi|189375083|gb|EDU93499.1| modification methylase SinI [Escherichia coli O157:H7 str. EC869]
          Length = 417

 Score = 79.8 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          K   LF G  G+ L LE+       E     E +  ++KT + N PN  +F G I     
Sbjct: 8  KFISLFSGAMGLDLGLEEA----GFELVACVEQDKAALKTIKTNKPNLAVFEGSIVDCTG 63

Query: 62 QDI---------PDHDVLLAGFPCQPFSQAG 83
           ++          + D++  G PCQ FS  G
Sbjct: 64 SELLALAGVNDKEEIDLVAGGPPCQAFSVFG 94


>gi|285017024|ref|YP_003374735.1| DNA (cytosine-5-)-methyltransferase [Xanthomonas albilineans GPE
          PC73]
 gi|283472242|emb|CBA14748.1| putative dna (cytosine-5-)-methyltransferase protein [Xanthomonas
          albilineans]
          Length = 429

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G+           +    EC   +EI+  +    +   P+    G++ +I  
Sbjct: 16 MRYLSLFSGL----EAAHLALSPLGWECVGVAEIDAAACALLRHRLPHVPNLGNVTEITD 71

Query: 62 QDIPD---HDVLLAGFPCQPFSQAG 83
            I      DV++ G PCQ  S AG
Sbjct: 72 AVIAQLGAIDVVIGGSPCQDLSVAG 96


>gi|312902260|ref|ZP_07761468.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
 gi|310634319|gb|EFQ17602.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX0635]
          Length = 359

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD+ K+  
Sbjct: 7  LTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGDLTKLHG 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP  D++  G PCQ  S  G
Sbjct: 63 GKIPPVDIVTFGSPCQNLSTIG 84


>gi|9632084|ref|NP_048873.1| hypothetical protein PBCV1_A517L [Paramecium bursaria Chlorella
          virus 1]
 gi|1620188|gb|AAC96884.1| M.CviAII cytosine DNA methyltransferase [Paramecium bursaria
          Chlorella virus 1]
          Length = 344

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+  DLF GIGGI   L        V      E N  +    Q  +P+  +F D+    
Sbjct: 1  MLRALDLFSGIGGITYGLRGI-----VTPIAYVEKNEDARGFLQRKYPDVPVFDDVCTFD 55

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            +     D++ AG+PC  FS AG
Sbjct: 56 AIEWKGKVDIITAGWPCTGFSTAG 79


>gi|332665156|ref|YP_004447944.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333970|gb|AEE51071.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 416

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 28/106 (26%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
             +  LF G GG+ + LEQ             E +     T + N P  L+F        
Sbjct: 27  YNVVSLFSGAGGLDIGLEQA----GFRTAVCVENDLNCRTTLRHNRPEWLLFDHPTKVLN 82

Query: 54  --------GDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
                   GDI  I  +++ +          +++ G PCQPFS  G
Sbjct: 83  EKIITRAPGDIRHIDAEELLEFAGLKPGKVALVVGGAPCQPFSNIG 128


>gi|317481261|ref|ZP_07940332.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902594|gb|EFV24477.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_1_36]
          Length = 461

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 2  LKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +K+    LF G                 E  F  E+N +     +  FPN+  + DIAK 
Sbjct: 1  MKLVHGSLFSG---FD-APSIASFQMGWENAFHCEVNDFCNIILKYWFPNSEHYEDIAKT 56

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
            +      D+L  GFPCQPFS AG
Sbjct: 57 DFKKWRGKIDILTGGFPCQPFSVAG 81


>gi|298714740|emb|CBJ25639.1| Cytosine-C5 specific DNA methyltransferase [Ectocarpus siliculosus]
          Length = 412

 Score = 79.4 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
            + + GIGG+R+ LE+     ++E    S EI+  +   Y+ NFP   +    I  +  Q
Sbjct: 56  LEFYSGIGGLRVSLEKALEAVSLETSVGSFEISSVANSVYEHNFPGCSVTRRSIEHLSAQ 115

Query: 63  DIP-DHDVLLAGFPCQPFSQAG 83
           DI  D D+ L   PCQPF + G
Sbjct: 116 DIEVDADIWLLSPPCQPFCRVG 137


>gi|194335097|ref|YP_002016957.1| DNA-cytosine methyltransferase [Prosthecochloris aestuarii DSM
          271]
 gi|194312915|gb|ACF47310.1| DNA-cytosine methyltransferase [Prosthecochloris aestuarii DSM
          271]
          Length = 340

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 2  LKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          +K+   D+F G+GG+   L +       +   + EI+  + K Y+ N   T +I  DI  
Sbjct: 1  MKLISIDIFSGVGGLTEGLHKA----GFQTELAFEIDELASKVYKLNHKKTKVITDDIRN 56

Query: 59 IKTQDIPD------HDVLLAGFPCQPFS 80
          I T+++          +L    PCQ FS
Sbjct: 57 ISTENVKQELGNKTIHLLAGCPPCQGFS 84


>gi|323139132|ref|ZP_08074189.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322395603|gb|EFX98147.1| DNA-cytosine methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 421

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
           M    + F G G  R  L          C F+++ +     +YQAN+     L+ GD+ K
Sbjct: 41  MPDFYEFFAGGGMARKGL-----GAGWTCLFANDFDHKKGLSYQANWGTGGELLVGDVRK 95

Query: 59  IKTQDIPDH-DVLLAGFPCQPFS 80
           +    +P   D++   FPCQ  S
Sbjct: 96  VTPSQLPGCADLVWGSFPCQDLS 118


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
          Length = 561

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
          MLK+  LF GIG     L+        E     E++ Y+VK+Y +          GDI K
Sbjct: 1  MLKVRTLFSGIGSPERALKDL--QIPYELVDFCEVDKYAVKSYCSVHGVSEEKNLGDITK 58

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +++P  D+L+ GFPC   S AG
Sbjct: 59 VWGRNLPYADLLVWGFPCPDISVAG 83


>gi|60098349|emb|CAH65005.1| hypothetical protein RCJMB04_1a16 [Gallus gallus]
          Length = 102

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  + + Y+ NFP+T ++   I  I 
Sbjct: 4  LRVLELYSGIGGMHQALKESCICA--EVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           ++      D++L   PCQPF++
Sbjct: 62 LKEFDRLSFDMILMSPPCQPFTR 84


>gi|302789792|ref|XP_002976664.1| hypothetical protein SELMODRAFT_105635 [Selaginella
          moellendorffii]
 gi|300155702|gb|EFJ22333.1| hypothetical protein SELMODRAFT_105635 [Selaginella
          moellendorffii]
          Length = 334

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + + GIGG+R  LE+     +     + EIN  +   Y+ NF +    G+I ++  
Sbjct: 8  LRVLEFYSGIGGLRFSLEEA--KIDATVVEAFEINELANDVYERNFGHRPNQGNIQRLSV 65

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
           D+   + D  L   PCQP+++ G
Sbjct: 66 SDLDKYEADAWLLSPPCQPYTRQG 89


>gi|19112479|ref|NP_595687.1| DNA methyltransferase homolog [Schizosaccharomyces pombe 972h-]
 gi|730347|sp|P40999|PMT1M_SCHPO RecName: Full=DNA methyltransferase homolog pmt1; AltName:
          Full=M.SpomI; AltName: Full=SpIM.SpoI
 gi|563911|emb|CAA57824.1| methyltransferase [Schizosaccharomyces pombe]
 gi|5689984|emb|CAB52029.1| DNA methyltransferase homolog [Schizosaccharomyces pombe]
          Length = 330

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L     +   +   + +INP + + Y  N        DI+ +  
Sbjct: 7  LRVLELYSGIGGMHYALNLA--NIPADIVCAIDINPQANEIYNLNHGKLAKHMDISTLTA 64

Query: 62 QDIPDHD--VLLAGFPCQPFSQAG 83
          +D    D  +      CQPF++ G
Sbjct: 65 KDFDAFDCKLWTMSPSCQPFTRIG 88


>gi|308061350|gb|ADO03238.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          Cuz20]
          Length = 355

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
           KI DLFCG GG    LE+         ++C      +  ++ T++ N  N T + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLERLKEFDALIGLDC------DKQALITFENNHKNATGVCGDIT 56

Query: 58 KIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
          +I+ ++           ++++ G PCQ FS  G
Sbjct: 57 QIEIKEKVIKLAQTLKINMIIGGPPCQGFSNKG 89


>gi|296393591|ref|YP_003658475.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180738|gb|ADG97644.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 372

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 23 NHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIP---DHDVLLAGFPCQP 78
               +     E +  +  T +ANFP+T  I GD+  +   +I    + D++  G PCQP
Sbjct: 22 ERAGFQAAALVEFDKNACATLRANFPDTPVIEGDVRGVDWSEIAAPGETDLVAGGPPCQP 81

Query: 79 FSQAG 83
          FS AG
Sbjct: 82 FSLAG 86


>gi|256419690|ref|YP_003120343.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
 gi|256034598|gb|ACU58142.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
          Length = 390

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------GD 55
          +K+ DL+CG GG+ +  E     +  E     +   ++VKT+  N P            D
Sbjct: 4  IKVLDLYCGYGGLSMGFE---FTKAFEVVGGIDFYDWAVKTFYYNHPQLNKLKVINKPCD 60

Query: 56 IAKIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +  ++T ++        D+++ G PCQ FS AG
Sbjct: 61 MTNLETSEVLKDIGGKPDIIVGGPPCQGFSFAG 93


>gi|302876780|ref|YP_003845413.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687461|ref|ZP_07629907.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579637|gb|ADL53649.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 578

 Score = 79.4 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G  G  L          +   ++SEI P+ V+      P     GDI  +  
Sbjct: 5  LTLGSLFDGSAGFPLG----GLISGITPLWASEIEPFPVRVTTKRLPQVEHLGDITTLNG 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +   D++  G PCQ  S AG
Sbjct: 61 STLAPVDIITFGSPCQDMSVAG 82


>gi|257867242|ref|ZP_05646895.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873577|ref|ZP_05653230.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
 gi|257801298|gb|EEV30228.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807741|gb|EEV36563.1| DNA-cytosine methyltransferase [Enterococcus casseliflavus EC10]
          Length = 373

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF GIG   L  ++    + +   ++SEI    ++  +  FP+ +  GD+ K+  
Sbjct: 21 LTLGSLFDGIGVFPLAAQK----QGITLSWASEIEKAPIRITKKQFPHMIHLGDLTKLHG 76

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            IP  D++  G PCQ  S  G
Sbjct: 77 GKIPPVDIVTFGSPCQNLSTIG 98


>gi|330939305|gb|EGH42698.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 382

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    + F G G  R  L         EC  +++++      Y  N+ +  L+ GD+A++
Sbjct: 1  MASFYEFFAGGGMARAGL-----GAEWECLLANDLSTQKAACYAENWGDDHLLIGDVAEL 55

Query: 60 KTQDIPDH-DVLLAGFPCQPFSQAG 83
           T+D+P H D+  A FPCQ  S AG
Sbjct: 56 TTKDLPGHADLAWASFPCQDLSLAG 80


>gi|325696380|gb|EGD38271.1| modification methylase HgiDII [Streptococcus sanguinis SK160]
          Length = 358

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG    L+++     +    + EI+P +VKTY+ N P   +I  DI  +   +
Sbjct: 7  IDLFSGAGGTTSGLKKS----GINVQVAIEIDPVAVKTYKLNNPEVYVIDRDIKLVSGDE 62

Query: 64 IPDH-----D---VLLAGFPCQPFSQAG 83
          I  H     D   +L+A  PCQ FS  G
Sbjct: 63 IKQHLKIGSDDKVMLVACPPCQGFSTIG 90


>gi|296814510|ref|XP_002847592.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
 gi|238840617|gb|EEQ30279.1| site-specific DNA-methyltransferase HphI [Arthroderma otae CBS
           113480]
          Length = 586

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+    +Q      ++  ++ + +P ++ +Y+ANFP++L    D+A   
Sbjct: 294 YTFGDGFCGAGGVSRGAQQA----GLKLTWAFDHSPSAMNSYRANFPSSLAETSDVADFL 349

Query: 61  TQDIPD--HDVLLAGFPCQPFSQA 82
           T  I D   DVL A  PCQPFS A
Sbjct: 350 TNSIWDIIVDVLHASPPCQPFSPA 373


>gi|308229535|gb|ADO24183.1| M.AscI [Arthrobacter sp. NEB 688]
          Length = 400

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
             + F G+G I     +        C  +++ +P  V+ Y+AN+PN  +   DI  +  
Sbjct: 15 TFVEYFAGVGLIH----EALRPLGWTCQLANDNDPKKVRAYEANYPNVPVSALDIRDLSA 70

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           DIP   +  A FPC   SQAG
Sbjct: 71 SDIPPATLATASFPCIDLSQAG 92


>gi|251789087|ref|YP_003003808.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
 gi|247537708|gb|ACT06329.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
          Length = 411

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
              + F G G  R  L      +  +C F+++++P    TY  N+ +      D+ ++ 
Sbjct: 20 FSFYEFFAGGGMARAGL-----GKQWQCLFANDMDPIKASTYIDNWGDEHFDIRDVREVA 74

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            ++P   D+  A FPCQ  S AG
Sbjct: 75 PDELPLHADLSWASFPCQDLSLAG 98


>gi|212716999|ref|ZP_03325127.1| hypothetical protein BIFCAT_01946 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212660059|gb|EEB20634.1| hypothetical protein BIFCAT_01946 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 392

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAKIK 60
           + F GIG  RL LE++      +  +S++I+    + Y+ NF     +TL+ GD++++ 
Sbjct: 18 LEFFAGIGLARLGLEES----GFQVEWSNDIDSAKCEMYRNNFTDTPGHTLVEGDMSELS 73

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D+P D  +     PC   S AG
Sbjct: 74 GDDLPHDASIAWGSSPCTDLSLAG 97


>gi|239999928|ref|ZP_04719852.1| NgoIM [Neisseria gonorrhoeae 35/02]
 gi|240116859|ref|ZP_04730921.1| NgoIM [Neisseria gonorrhoeae PID1]
 gi|240127204|ref|ZP_04739865.1| NgoIM [Neisseria gonorrhoeae SK-93-1035]
          Length = 278

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          Y+ANF     FGDI  I   DIPDHD+LLAGFPCQPFS AG
Sbjct: 2  YEANFGEKP-FGDINGIDPSDIPDHDILLAGFPCQPFSIAG 41


>gi|156552675|ref|XP_001599223.1| PREDICTED: similar to DNA cytosine-5 methyltransferase 3B2 [Nasonia
           vitripennis]
          Length = 1093

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-HRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
           +++  LF GIG     L    + + N+EC+++SEI+P S++    N  N +I  GD+  I
Sbjct: 824 IRVLSLFDGIG---TGLVVLKHLNVNIECYYASEIDPDSMQVSFFNHGNEIIQLGDVRNI 880

Query: 60  KT---QDIPDHDVLLAGFPCQPFSQA 82
                ++I   D+L+ G PC   S A
Sbjct: 881 DEKKIKEIAPIDLLIGGSPCNELSLA 906


>gi|113477918|ref|YP_723979.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168966|gb|ABG53506.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 337

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 4  ITDLFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          + D+F G GG+ L  E Q F           E+N     TY  N         IA     
Sbjct: 21 VIDIFAGCGGLSLGFEAQGFTTHGF------EMNADCCATYNKNLKGNCTQ--IALTSET 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
           +P   V++ G PCQPFS  G
Sbjct: 73 KLPPGKVIIGGPPCQPFSVGG 93


>gi|79835466|gb|ABB52093.1| Mod [Arthrospira platensis]
 gi|291569838|dbj|BAI92110.1| cytosine-specific methyltransferase [Arthrospira platensis NIES-39]
          Length = 345

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF G GG  L  +        +     E+   +  TY  N  +            QD
Sbjct: 27  VLDLFAGCGGFSLGFKAA----GFQTIGY-EMLADAAATYTRNLQDPCYCQ--TLEIGQD 79

Query: 64  IPDH-DVLLAGFPCQPFSQAG 83
           + +H DV++ G PCQPFS  G
Sbjct: 80  LCNHPDVIIGGPPCQPFSVGG 100


>gi|298374832|ref|ZP_06984790.1| cytosine-specific methyltransferase [Bacteroides sp. 3_1_19]
 gi|298269200|gb|EFI10855.1| cytosine-specific methyltransferase [Bacteroides sp. 3_1_19]
          Length = 403

 Score = 79.0 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 22/99 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---------FPN--TL 51
           K  DLF G GG+ L L    +    +  F+ E +P++ +T + N         +P+    
Sbjct: 9   KYIDLFAGCGGLSLGL----HLSGWKGLFAIEKSPFAFETLKYNLIDNKKHFDWPSWLEC 64

Query: 52  IFGDIAKIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
              DI  +               D++  G PCQ FS AG
Sbjct: 65  KEHDIYDVLKSHQEQLKSLRGTIDLVAGGPPCQGFSMAG 103


>gi|260796005|ref|XP_002592995.1| hypothetical protein BRAFLDRAFT_275730 [Branchiostoma floridae]
 gi|229278219|gb|EEN49006.1| hypothetical protein BRAFLDRAFT_275730 [Branchiostoma floridae]
          Length = 386

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 2  LKITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          L++ + + G+GG+    LE            + +IN  +   Y+ NFP+  L+  DI  I
Sbjct: 11 LRVVEFYSGVGGMHYAVLES---KVPATVVAALDINTTANAVYRHNFPHVNLLQRDITGI 67

Query: 60 KTQDI--PDHDVLLAGFPCQPFSQAG 83
          K  +    + DV +   PCQPF++ G
Sbjct: 68 KLPEFQSWNADVFMMSPPCQPFTRVG 93


>gi|169794286|ref|YP_001712079.1| putative cytosine-specific methyltransferase [Acinetobacter
          baumannii AYE]
 gi|213159140|ref|YP_002321138.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|215481844|ref|YP_002324026.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
          HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332850048|ref|ZP_08432435.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013150]
 gi|332871527|ref|ZP_08440021.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013113]
 gi|169147213|emb|CAM85072.1| putative cytosine-specific methyltransferase [Acinetobacter
          baumannii AYE]
 gi|213058300|gb|ACJ43202.1| DNA cytosine methyltransferase [Acinetobacter baumannii AB0057]
 gi|213986404|gb|ACJ56703.1| Modification methylase HgiDII(Cytosine-specificmethyltransferase
          HgiDII) [Acinetobacter baumannii AB307-0294]
 gi|332730897|gb|EGJ62203.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013150]
 gi|332731381|gb|EGJ62673.1| DNA (cytosine-5-)-methyltransferase [Acinetobacter baumannii
          6013113]
          Length = 355

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG    L Q      ++     + +  + +TYQANFP  L +  DI ++ 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDITIGLDFDIKAAETYQANFPEALFYNVDIRELD 56

Query: 61 TQDIPDHD----------VLLAGFPCQPFS 80
           +++              + +A  PCQPFS
Sbjct: 57 EKELAKAFKEKNREKEPLLFVACAPCQPFS 86


>gi|294635767|ref|ZP_06714227.1| C-5 cytosine-specific DNA methylase family protein [Edwardsiella
          tarda ATCC 23685]
 gi|291090867|gb|EFE23428.1| C-5 cytosine-specific DNA methylase family protein [Edwardsiella
          tarda ATCC 23685]
          Length = 403

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 18/93 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGD 55
          +K  DLF G GG  L     F    ++   + E++  +  TY  N    L         D
Sbjct: 1  MKAIDLFAGAGGFSLA---AFE-VGIDVQAAIELDKQASDTYYHNLVEKLGAQTQVFSQD 56

Query: 56 IAKIKTQDIPDH--------DVLLAGFPCQPFS 80
          I  +    +           D+LL G PCQ FS
Sbjct: 57 INDVDIGSMMKFQGIKQGQLDILLGGPPCQGFS 89


>gi|290968468|ref|ZP_06560007.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781464|gb|EFD94053.1| DNA (cytosine-5-)-methyltransferase [Megasphaera genomosp. type_1
           str. 28L]
          Length = 699

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK-- 58
            +I DLFCG GG+   + +  +        + +IN    +T++ N P   LI GDI    
Sbjct: 338 FRILDLFCGAGGMSYGMHKNSH---FVTKVALDINEKLAQTFKENIPESELIIGDIQDKA 394

Query: 59  -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
                I        ++++ G PCQ FS  G
Sbjct: 395 IKEKIINLSKKNKVNMIIGGPPCQGFSLKG 424


>gi|254413051|ref|ZP_05026823.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180215|gb|EDX75207.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 353

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIAK 58
           + DLF G GG+ L  E              E    +  TYQ N     +  TL       
Sbjct: 27  VIDLFAGCGGLALGFEAA----GFRTIGY-EKLADACTTYQHNLHGFCYQTTLARQ---- 77

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQAG 83
                +   DV++ G PCQPFS  G
Sbjct: 78  --PDLVDGADVIIGGPPCQPFSVGG 100


>gi|400287|sp|P31033|MTM4_NEIGO RecName: Full=Modification methylase NgoMIV; Short=M.NgoMIV;
          AltName: Full=Cytosine-specific methyltransferase
          NgoMIV
          Length = 312

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE+             EI P + +T + N P+  +I GD+   +
Sbjct: 3  FTSLEICAGAGGQALGLERA----GFSHVALIEIEPSACQTLRLNRPDWNVIEGDVRLFQ 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D+L  G PC PFS+AG
Sbjct: 59 GEGYDGIDLLAGGVPCPPFSKAG 81


>gi|14601777|ref|NP_148318.1| cytosine-specific DNA methylase [Aeropyrum pernix K1]
 gi|5105700|dbj|BAA81012.1| cytosine-specific DNA methylase [Aeropyrum pernix K1]
          Length = 327

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
              D+F G GG     E+           + +  P + +TY+ANFP+T  I  D+ ++ 
Sbjct: 5  YTAADVFAGGGGFSRGFEEA----GFRVRVAIDNYPPAARTYKANFPHTAFIADDVKEVG 60

Query: 61 TQDIP--------DHDVLLAGFPCQPFSQA 82
           ++I         + DV++A  PC+PF+ A
Sbjct: 61 LEEISSVSGLSPGEVDVVIASPPCEPFTGA 90


>gi|2522459|gb|AAC45757.1| M.BssHII methylase [Geobacillus stearothermophilus]
          Length = 375

 Score = 78.6 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
           L    LF G GG+ +  EQ  +    +E   + +    +  T +  +    +++ GDI++
Sbjct: 159 LTAFSLFSGAGGLDIGAEQATYKSMKIETLVTLDNWKDACDTLRGFYQGRTSVLQGDISE 218

Query: 59  IKTQDIPDH---------DVLLAGFPCQPFSQAG 83
           I+   +  H         D++  G PCQ FSQAG
Sbjct: 219 IQDPKLLWHQESQHDQIPDIVFGGPPCQAFSQAG 252


>gi|126465817|ref|YP_001040926.1| DNA-cytosine methyltransferase [Staphylothermus marinus F1]
 gi|126014640|gb|ABN70018.1| DNA-cytosine methyltransferase [Staphylothermus marinus F1]
          Length = 323

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           K  DLFCG GG       T            +    + +TY+ NFP+++ I  DI +I+
Sbjct: 5  YKFIDLFCGAGGFAEGFILTNR---FRSVLGIDNFRPAAQTYKINFPDSIVIMEDIKRIR 61

Query: 61 TQDI------PDHDVLLAGFPCQPFSQA 82
            D+       + DV++   PC+PF+ A
Sbjct: 62 NDDLIEIIDPEEIDVVIGSPPCEPFTGA 89


>gi|291301680|ref|YP_003512958.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570900|gb|ADD43865.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis DSM
           44728]
          Length = 329

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I  L  GIG +    +        E  + ++ +P + +      P+    GDI     +
Sbjct: 28  RIGSLCSGIGALD---DAVAAVTGAELAWVADTDPDAARVLTHRHPHAPNLGDIRTAPWE 84

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
           D    D+L+AG PCQP S+AG
Sbjct: 85  DAEPVDILVAGVPCQPVSKAG 105


>gi|302782830|ref|XP_002973188.1| hypothetical protein SELMODRAFT_98974 [Selaginella
          moellendorffii]
 gi|300158941|gb|EFJ25562.1| hypothetical protein SELMODRAFT_98974 [Selaginella
          moellendorffii]
          Length = 334

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + + GIGG+R  LE+      V   F  EIN  +   Y+ NF +    G+I ++  
Sbjct: 4  LRVLEFYSGIGGLRFSLEEAKIDAMVVEVF--EINELANDVYERNFGHRPNQGNIQRLSV 61

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
           D+   + D  L   PCQP+++ G
Sbjct: 62 SDLDKYEADAWLLSPPCQPYTRQG 85


>gi|296114006|ref|YP_003627944.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
 gi|295921700|gb|ADG62051.1| DNA-cytosine methyltransferase [Moraxella catarrhalis RH4]
          Length = 410

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           +++  +F GIG I   L++   + N    F+++I+ +  K+Y AN+         DI   
Sbjct: 36  IRLATVFSGIGAIEQALKRL--NLNHSIVFANDIDNFVKKSYLANYELDEKNWHSDITTF 93

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
                 +  DVL+ G PCQ FS  G
Sbjct: 94  DATPYKNQVDVLVGGSPCQAFSMVG 118


>gi|46019864|emb|CAE52388.1| putative cytosine-specific methyltransferase [Streptococcus
           thermophilus]
 gi|312279225|gb|ADQ63882.1| Cytosine-specific methyltransferase [Streptococcus thermophilus
           ND03]
          Length = 515

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIFGD 55
            DLFCG GG    + Q       +  FSS+ +P + +TY                    D
Sbjct: 5   IDLFCGAGGFSEGILQA----GFDILFSSDRSPMAQETYVNRHRQLGLEEGVDTHFELAD 60

Query: 56  IAKIKTQDI---------------PDHDVLLAGFPCQPFSQAG 83
           I  + ++ I                D DV+  G PCQ FS+ G
Sbjct: 61  IKDLTSERIFEVINNLRYGNIFEPGDIDVIFGGPPCQGFSRLG 103


>gi|157953001|ref|YP_001497893.1| hypothetical protein NY2A_B697R [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155123228|gb|ABT15096.1| hypothetical protein NY2A_B697R [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 369

 Score = 78.6 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  DLF GIGGI   L +      VE     E N  +    +   P   +F D+     
Sbjct: 3  LRALDLFSGIGGITHGLREI-----VEPIAFVEKNDEARSFLKKKHPEIPVFDDVCSFDA 57

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
                D++LAG+PC  FS AG
Sbjct: 58 TKWTHVDIILAGWPCTGFSNAG 79


>gi|255530843|ref|YP_003091215.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255343827|gb|ACU03153.1| DNA-cytosine methyltransferase [Pedobacter heparinus DSM 2366]
          Length = 474

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 13/88 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIK 60
             D F G GG+   L         +  F ++    +++TY  N     N    GDI K+ 
Sbjct: 94  FADFFSGAGGLSQGLINA----GFQPVFVNDNYTDALETYYFNHSLPLNQFYNGDIRKLV 149

Query: 61  TQD------IPDHDVLLAGFPCQPFSQA 82
                         ++  G PCQ FS A
Sbjct: 150 ENFSQYKHLFKGVKIICGGPPCQGFSTA 177


>gi|309378580|emb|CBX22758.1| DNA cytosine methyltransferase M.NlaIV [Neisseria lactamica
          Y92-1009]
          Length = 380

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query: 41 KTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  + N+P+ + +GDI KI+T DIPD D+LLAGFPCQ FS AG
Sbjct: 2  EVLKQNYPDEVPYGDIPKIETGDIPDFDILLAGFPCQAFSFAG 44


>gi|145641419|ref|ZP_01796998.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          influenzae R3021]
 gi|145273962|gb|EDK13829.1| cytosine specific DNA methyltransferase (BSP6IM) [Haemophilus
          influenzae 22.4-21]
          Length = 298

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +EC   SE++    KTY+  F ++L  GD+ ++  + +PD D+++AGFPCQ FS  G
Sbjct: 1  MECIAHSEVDLNPAKTYEIFFNDSLNLGDLTQLAPKSLPDFDLMIAGFPCQTFSIIG 57


>gi|297527509|ref|YP_003669533.1| DNA-cytosine methyltransferase [Staphylothermus hellenicus DSM
          12710]
 gi|297256425|gb|ADI32634.1| DNA-cytosine methyltransferase [Staphylothermus hellenicus DSM
          12710]
          Length = 323

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           K  DLFCG GG       T            +    + +TY+ NFP+++ +  DI +I+
Sbjct: 5  YKFIDLFCGAGGFAEGFILTNR---FRSILGIDNFRPAAQTYKINFPDSIVVMEDIKRIR 61

Query: 61 TQDI------PDHDVLLAGFPCQPFSQA 82
            D+       + DV++   PC+PF+ A
Sbjct: 62 NDDLIEIVDPEEIDVVIGSPPCEPFTGA 89


>gi|311234076|gb|ADP86930.1| DNA-cytosine methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 489

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   +  GI          ++         +EI P+       +FPN    GD   I  
Sbjct: 3  MRYISICSGI----EAATVAWHPLGWHPVAFAEIEPFPCAVLAHHFPNVPNLGDFTTIVM 58

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
          +      D+++ G PCQ FS AG
Sbjct: 59 EQYRGTVDLVVGGTPCQAFSVAG 81


>gi|281181375|dbj|BAI57705.1| cytosine specific DNA methyltransferase [Escherichia coli SE15]
 gi|315288374|gb|EFU47772.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 110-3]
          Length = 398

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGD 55
          +K  DLF G GG  L    T     ++   + E +  +  TY+ N          L+  D
Sbjct: 1  MKAIDLFAGAGGFSLSAHNTGA---IDVVAAIEFDSAAANTYRKNMLERLEHKTELLQED 57

Query: 56 IAKIKTQDIP--------DHDVLLAGFPCQPFS 80
          I  +  + +         + D++L G PCQ FS
Sbjct: 58 ILLVGPKKLRKKIKLKKGELDMILGGPPCQGFS 90


>gi|112983066|ref|NP_001036934.1| DNA cytosine-5 methyltransferase [Bombyx mori]
 gi|54888741|dbj|BAD67190.1| DNA cytosine-5 methyltransferase [Bombyx mori]
          Length = 336

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
          +I +L+ GIGG+        +    +   + +IN  +   Y+ NFP TL+F  +I  +  
Sbjct: 8  RILELYSGIGGMHCA--WNESTIKGKVVAAIDINTVANDVYKYNFPETLLFTKNIQSLTP 65

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
           +I     D +L   PCQPF++ G
Sbjct: 66 IEIEKYKIDTVLMSPPCQPFTRNG 89


>gi|167646223|ref|YP_001683886.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
 gi|167348653|gb|ABZ71388.1| DNA-cytosine methyltransferase [Caulobacter sp. K31]
          Length = 387

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAK 58
          M    + F G G  R  L          C F+++ +     TYQ N+     L  GD+ +
Sbjct: 1  MPSFYEFFAGGGMARAGL-----GDEWTCLFANDFDAKKGMTYQRNWGADGELHIGDVKQ 55

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +KT+ +  + D++   FPCQ  S AG
Sbjct: 56 VKTKQLRGEPDLVWGSFPCQDLSLAG 81


>gi|46579926|ref|YP_010734.1| type II DNA modification methyltransferase [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46449342|gb|AAS95993.1| type II DNA modification methyltransferase, putative
          [Desulfovibrio vulgaris str. Hildenborough]
          Length = 487

 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   +  GI          ++         +EI P+       +FPN    GD   I  
Sbjct: 1  MRYISICSGI----EAATVAWHPLGWHPVAFAEIEPFPCAVLAHHFPNVPNLGDFTTIVM 56

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
          +      D+++ G PCQ FS AG
Sbjct: 57 EQYRGTVDLVVGGTPCQAFSVAG 79


>gi|326573696|gb|EGE23654.1| DNA-cytosine methyltransferase [Moraxella catarrhalis O35E]
          Length = 408

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           +++  +F GIG I   L++   + N    F+++I+ +  K+Y AN+         DI   
Sbjct: 34  IRLATVFSGIGAIEQALKRL--NLNHSIVFANDIDNFVKKSYLANYELDEKNWHSDITTF 91

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
                 +  D+L+ G PCQ FS  G
Sbjct: 92  DATPYKNQVDILVGGSPCQAFSMVG 116


>gi|123441984|ref|YP_001005967.1| prophage encoded DNA modification methylase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088945|emb|CAL11755.1| prophage encoded DNA modification methylase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 452

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTL---- 51
           +   DLF G GG  L L +      +    + E N  + +T + N      F  +     
Sbjct: 1   MNFIDLFSGCGGFSLGLLKAGLTGRL----AVEKNQDAFETLKRNLIEGNKFSYSWASEK 56

Query: 52  ---IFGDIAKIKTQ---------DIPDHDVLLAGFPCQPFSQAG 83
                 DI  +  +         D  + D+++ G PCQ FS AG
Sbjct: 57  ISLDNHDIHTLLDKYSSYLSELGDGREIDLVVGGPPCQGFSSAG 100


>gi|324516189|gb|ADY46452.1| tRNA (cytosine-5-)-methyltransferase [Ascaris suum]
          Length = 193

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          L+  +LF GIGG    L+++      E   + +IN  +   Y+ NFP  T+   +I  + 
Sbjct: 12 LRCLELFSGIGGFHYALKESGTR--FEMLAAFDINDVANAIYKHNFPCTTVHQCNIQALT 69

Query: 61 TQ--DIPDHDVLLAGFPCQPFSQAG 83
          ++  D    D+     PCQPF++ G
Sbjct: 70 SEFYDRQCADLWTMSPPCQPFTKKG 94


>gi|74317828|ref|YP_315568.1| C-5 cytosine-specific DNA methylase [Thiobacillus denitrificans
          ATCC 25259]
 gi|74057323|gb|AAZ97763.1| C-5 cytosine-specific DNA methylase [Thiobacillus denitrificans
          ATCC 25259]
          Length = 382

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M    + F G G  R  L         +C F+++ +P    +Y  N+  + L  GD+  +
Sbjct: 1  MPSFYEFFAGGGMARAGL-----GAEWDCLFANDFDPKKAASYAVNWDGDELRVGDVGTL 55

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
             D+P   D+  A FPCQ  S AG
Sbjct: 56 TVPDLPGRADLAWASFPCQDLSLAG 80


>gi|300775991|ref|ZP_07085850.1| possible DNA (cytosine-5-)-methyltransferase [Chryseobacterium
           gleum ATCC 35910]
 gi|300505124|gb|EFK36263.1| possible DNA (cytosine-5-)-methyltransferase [Chryseobacterium
           gleum ATCC 35910]
          Length = 415

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 22/98 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---------FPNTLI-- 52
             DLF G GG+ L L     +      F+ E NP + KT + N         +P  L   
Sbjct: 7   YIDLFAGCGGLSLGLHNAGWNG----LFAIEKNPDAFKTLEHNLINKKKHFDWPEWLPKK 62

Query: 53  FGDIAKI------KTQDIP-DHDVLLAGFPCQPFSQAG 83
             DI  +        + +     ++  G PCQ FS AG
Sbjct: 63  NHDINSVLRTYKKNLKSLRGSVSLVAGGPPCQGFSMAG 100


>gi|9858807|gb|AAG01143.1|AF283660_1 BsrFI methylase [Geobacillus stearothermophilus]
          Length = 389

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY------QANFP-NTLIF 53
          M+K+  LF G G + L           +  + +EI P   +++      + N   + +  
Sbjct: 1  MIKVASLFSGAGFLDLGF----TENGFDIVWGAEIVPEFARSHNYNMRLRYNHDIDRIHT 56

Query: 54 GDIAKIKTQDIP-DHDVLLAGFPCQPFSQ 81
           DI  +   DIP +   ++ G PCQ FS 
Sbjct: 57 VDIVNVSPMDIPQNIRGIIGGPPCQDFSI 85


>gi|148826164|ref|YP_001290917.1| modification methylase [Haemophilus influenzae PittEE]
 gi|148716324|gb|ABQ98534.1| modification methylase [Haemophilus influenzae PittEE]
 gi|162532590|gb|ABY16693.1| probable methylase [Haemophilus influenzae]
 gi|309973308|gb|ADO96509.1| Probable cytosine-specific DNA methyltransferase [Haemophilus
           influenzae R2846]
          Length = 409

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           +++  +F GIG I   +++     N E  F+ +I+P+  K+Y AN+         DI   
Sbjct: 35  IRLATVFSGIGAIEQAMKRL--KLNHEIIFAGDIDPHVKKSYLANYQLSEEHWHSDITTF 92

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
                 +  D+L+ G PCQ FS  G
Sbjct: 93  DATPYREQIDLLVGGSPCQAFSMVG 117


>gi|148827577|ref|YP_001292330.1| hypothetical protein CGSHiGG_05020 [Haemophilus influenzae
          PittGG]
 gi|319775697|ref|YP_004138185.1| Cytosine-specific methyltransferase (pseudogene) [Haemophilus
          influenzae F3047]
 gi|319896763|ref|YP_004134957.1| cytosine-specific methyltransferase [Haemophilus influenzae
          F3031]
 gi|148718819|gb|ABQ99946.1| hypothetical protein CGSHiGG_05020 [Haemophilus influenzae
          PittGG]
 gi|317432266|emb|CBY80618.1| Cytosine-specific methyltransferase [Haemophilus influenzae
          F3031]
 gi|317450288|emb|CBY86504.1| Cytosine-specific methyltransferase (pseudogene) [Haemophilus
          influenzae F3047]
          Length = 424

 Score = 78.3 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M     +  GI      +   +     +  + SEI P+       ++PN    GD+  + 
Sbjct: 1  MFTYGSICSGI----EAVSVAWKGLG-KPLWFSEIEPFPCAVLTYHYPNIPNLGDMTTLP 55

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    +IP  DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIPAPDVLVGGTPCQAFSIAG 82


>gi|170719133|ref|YP_001784281.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827262|gb|ACA32633.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 408

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIP 65
           F GIG I    ++     N    F+ +I+P+  K+Y AN+         DI         
Sbjct: 40  FSGIGAIEQAFKRL--ELNHCIVFAGDIDPHVKKSYLANYDLSEEHWHSDITTFDAIPYR 97

Query: 66  D-HDVLLAGFPCQPFSQAG 83
           D  D+L+ G PCQ FS  G
Sbjct: 98  DQVDILVGGSPCQAFSMVG 116


>gi|317010333|gb|ADU84080.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SouthAfrica7]
          Length = 361

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG    LE+         ++C      +  ++ T++ N  N + I GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLERLKEFSALIGLDC------DKQALNTFENNHKNAVGICGDIT 56

Query: 58 K--IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          +  IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QAGIKEKVIELAKKLEINMIIGGPPCQGFSNKG 89


>gi|167630968|ref|YP_001681467.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
 gi|167593708|gb|ABZ85456.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
          Length = 667

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L +  LF G GG  L          +   ++SEI P+ ++      P    +GDI+ I  
Sbjct: 5  LTLGSLFDGSGGFPLGA----VLNGITPVWASEIEPFPIRVTTRRLPQMKHYGDISCING 60

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           +I   D++  G PC   S AG
Sbjct: 61 TEIEPVDIISFGSPCTDMSVAG 82


>gi|303236368|ref|ZP_07322958.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens
          FB035-09AN]
 gi|302483426|gb|EFL46431.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens
          FB035-09AN]
          Length = 357

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
            I DLFCG GG+    E+       +     +I   ++ T++ N    +    D++  +
Sbjct: 7  YNIIDLFCGCGGLSKGFEEA----GYKTLLGVDIEQNALNTFEKNHNGAVGLNLDLSASE 62

Query: 61 TQDIPD-------HDVLLAGFPCQPFSQAG 83
          + D  D        DV++ G PCQ FS  G
Sbjct: 63 SFDKIDEVVKGRAIDVIIGGPPCQGFSLTG 92


>gi|269941524|emb|CBI49922.1| phage C-5 cytosine-specific DNA methylase [Staphylococcus aureus
          subsp. aureus TW20]
          Length = 332

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QANFPNTLIFGDIAK 58
          M+K+ +LF G+G   + L         E    SE    + + +    N   +   GD+  
Sbjct: 1  MIKVLELFSGVGSFSISLNTLGIEH--EIVGFSETRKTATQLFCKLHNKKESENLGDVRN 58

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +D+ D D+L+ G PCQ F++AG
Sbjct: 59 VSAKDL-DVDLLVFGSPCQSFTRAG 82


>gi|261339110|ref|ZP_05966968.1| hypothetical protein ENTCAN_05324 [Enterobacter cancerogenus ATCC
          35316]
 gi|288318947|gb|EFC57885.1| modification methylase HgiDII [Enterobacter cancerogenus ATCC
          35316]
          Length = 355

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI 59
          M K  DLFCG GG+   L+Q     N E   + E N  + +T++AN     +F  DI  I
Sbjct: 1  MFKAIDLFCGGGGLTEGLKQA----NFEVISAVENNISAAETFKANNRKCHLFQEDIRFI 56

Query: 60 KTQDIPD--------HDVLLAGFPCQPFS 80
           +Q+I D          +L    PCQ FS
Sbjct: 57 SSQEIMDKVGIKSGELSLLAGCPPCQGFS 85


>gi|167630879|ref|YP_001681378.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
 gi|167593619|gb|ABZ85367.1| DNA-cytosine methyltransferase [Heliobacterium modesticaldum
          Ice1]
          Length = 319

 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    ++  G GG  L LE        E     EI      T + N P   +I  D+   
Sbjct: 3  MFTSVEICAGAGGQALGLEMA----GFEHVALVEIEKEYCTTLKLNRPKWNVINEDVRLF 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D+L  G PC PFS AG
Sbjct: 59 DGNAYRGIDLLAGGVPCPPFSVAG 82


>gi|194098495|ref|YP_002001557.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|239998889|ref|ZP_04718813.1| DNA modification methylase [Neisseria gonorrhoeae 35/02]
 gi|240115566|ref|ZP_04729628.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|240125661|ref|ZP_04738547.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|254493672|ref|ZP_05106843.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|260440624|ref|ZP_05794440.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|268594728|ref|ZP_06128895.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268601236|ref|ZP_06135403.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268684247|ref|ZP_06151109.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291043935|ref|ZP_06569651.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|193933785|gb|ACF29609.1| DNA modification methylase [Neisseria gonorrhoeae NCCP11945]
 gi|226512712|gb|EEH62057.1| DNA modification methylase [Neisseria gonorrhoeae 1291]
 gi|268548117|gb|EEZ43535.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae 35/02]
 gi|268585367|gb|EEZ50043.1| DNA modification methylase [Neisseria gonorrhoeae PID18]
 gi|268624531|gb|EEZ56931.1| DNA modification methylase [Neisseria gonorrhoeae SK-92-679]
 gi|291012398|gb|EFE04387.1| DNA modification methylase [Neisseria gonorrhoeae DGI2]
 gi|317164179|gb|ADV07720.1| DNA modification methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 312

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE+             EI P + +T + N P+  +I GD+   +
Sbjct: 3  FTSLEICAGAGGQALGLERA----GFSHVALIEIEPSACQTLRLNRPDWNVIEGDVRLFQ 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D+L  G PC PFS+AG
Sbjct: 59 GEGYDGIDLLAGGVPCPPFSKAG 81


>gi|238059022|ref|ZP_04603734.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237886458|gb|EEP75286.1| DNA-cytosine methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 442

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 18/88 (20%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G GG+    +Q       E   +S+I+P +  T+  NFP    I GDI + +  
Sbjct: 1  MLDLFAGAGGLSQGFQQA----GFEIAGASDIDPDACATFALNFPGAQAICGDIRRPELH 56

Query: 63 DIPDHDVL---------LAGFPCQPFSQ 81
          +     ++         + G PCQ FSQ
Sbjct: 57 E----HIIEVGRGVDVVVGGPPCQAFSQ 80


>gi|157952392|ref|YP_001497284.1| hypothetical protein NY2A_B088L [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155122619|gb|ABT14487.1| hypothetical protein NY2A_B088L [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 343

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+  DLF GIGG    L        ++     E   +        FP+  IF D+    
Sbjct: 4  MLRSLDLFSGIGGNSYALRDI-----LKPVAYVEREQHLRDFLGRKFPDVPIFDDVVTFD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ + D D++ AGFPC  FS AG
Sbjct: 59 TRSVKDIDIITAGFPCTGFSTAG 81


>gi|240142254|ref|YP_002966764.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
 gi|240012198|gb|ACS43423.1| putative site-specific DNA-methyltransferase [Methylobacterium
          extorquens AM1]
          Length = 384

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   LF G G +   LE   +    EC    E++  + +   + FP   +  D++ +  
Sbjct: 1  MRTIGLFSGSGSLEAGLEAGGH----ECLMLCEVSEPARRVLASRFPGVPVAHDVSDL-- 54

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
            +P  D+L AGFPCQ  S +G
Sbjct: 55 ARLPSCDLLAAGFPCQDLSLSG 76


>gi|59801274|ref|YP_207986.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|240014199|ref|ZP_04721112.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae DGI18]
 gi|240016634|ref|ZP_04723174.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA6140]
 gi|240080823|ref|ZP_04725366.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|240112810|ref|ZP_04727300.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae MS11]
 gi|240117858|ref|ZP_04731920.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID1]
 gi|240121762|ref|ZP_04734724.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID24-1]
 gi|240123416|ref|ZP_04736372.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae PID332]
 gi|240128118|ref|ZP_04740779.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae
          SK-93-1035]
 gi|268596944|ref|ZP_06131111.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268598881|ref|ZP_06133048.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603557|ref|ZP_06137724.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682037|ref|ZP_06148899.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686505|ref|ZP_06153367.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399137|ref|ZP_06643302.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|5051442|emb|CAB44950.1| DNA modification methylase [Neisseria gonorrhoeae]
 gi|5262959|emb|CAB45015.2| DNA modification methylase [Neisseria gonorrhoeae]
 gi|59718169|gb|AAW89574.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA 1090]
 gi|268550732|gb|EEZ45751.1| DNA modification methylase M.NGOI [Neisseria gonorrhoeae FA19]
 gi|268583012|gb|EEZ47688.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587688|gb|EEZ52364.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622321|gb|EEZ54721.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626789|gb|EEZ59189.1| DNA-cytosine methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610551|gb|EFF39661.1| DNA (cytosine-5-)-methyltransferase [Neisseria gonorrhoeae F62]
          Length = 312

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE+             EI P + +T + N P+  +I GD+   +
Sbjct: 3  FTSLEICAGAGGQALGLERA----GFSHVALIEIEPSACQTLRLNRPDWNVIEGDVRLFQ 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D+L  G PC PFS+AG
Sbjct: 59 GEGYDGIDLLAGGVPCPPFSKAG 81


>gi|125974253|ref|YP_001038163.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
 gi|125714478|gb|ABN52970.1| DNA-cytosine methyltransferase [Clostridium thermocellum ATCC
          27405]
          Length = 350

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 2  LKI--TDLFCGIGGIRLDLEQT-FNHRNVECF--FSSEINPYSVKTYQANF----PNTLI 52
          +K    +LFCG GG+    +     ++       ++++ +  +  TY  N     P ++I
Sbjct: 1  MKFELGELFCGPGGLAYGAKTAEIENKEYRIIHKWANDYDRDTCDTYIHNICPDNPESVI 60

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            D+ K+    +   D L  GFPC  FS  G
Sbjct: 61 CQDVRKLNIDSLQPIDALAFGFPCNDFSVVG 91


>gi|168036438|ref|XP_001770714.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678075|gb|EDQ64538.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 364

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ + + GIGG+R  L++           + +IN  +   Y+ NF +     +I ++  
Sbjct: 8  MRVLEFYSGIGGLRYSLQEAGVEAV--VVEAFDINEVANDVYEHNFGHRPSQRNIQRLTV 65

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
            +     D  +   PCQP+++ G
Sbjct: 66 SQLDAYKADTWIMSPPCQPYTRQG 89


>gi|161869767|ref|YP_001598934.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161595320|gb|ABX72980.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 411

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +       +  D+L+ G PCQ FS  G
Sbjct: 94  QFDASKFRNQVDILVGGSPCQAFSMVG 120


>gi|17548155|ref|NP_521557.1| DNA modification cytosine-specific methyltransferase [Ralstonia
          solanacearum GMI1000]
 gi|17430462|emb|CAD16935.1| probable site-specific dna methylase protein [Ralstonia
          solanacearum GMI1000]
          Length = 364

 Score = 77.9 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKT 61
          +  LFCG GG+    EQ       E   + +I P S+++Y  N   P      DI  IK 
Sbjct: 2  LLSLFCGAGGLDKGFEQA----GFEVGLAFDIRPDSIESYNRNRRAPIRGYCRDIRDIKP 57

Query: 62 QDIPDH-------DVLLAGFPCQPFSQA 82
          + + +          ++ G PCQ FS+A
Sbjct: 58 KALDELFGETFRPSGIIGGPPCQSFSRA 85


>gi|218767941|ref|YP_002342453.1| putative modification methylase [Neisseria meningitidis Z2491]
 gi|6900408|emb|CAB72018.1| putative cytosine-specific methyltransferase [Neisseria
           meningitidis]
 gi|121051949|emb|CAM08255.1| putative modification methylase [Neisseria meningitidis Z2491]
          Length = 411

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +       +  D+L+ G PCQ FS  G
Sbjct: 94  QFDASKFRNQVDILVGGSPCQAFSMVG 120


>gi|167031542|ref|YP_001666773.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
 gi|166858030|gb|ABY96437.1| DNA-cytosine methyltransferase [Pseudomonas putida GB-1]
          Length = 377

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQ 62
          + DLF G GG+ L  E            + +++      Y  NFP    I  D+A +   
Sbjct: 8  VIDLFSGCGGLGLGAELA----GFHSLAAVDVDKDLQSAYSLNFPLTQTINTDLALVTPS 63

Query: 63 DI------PDHDVLLAGFPCQPFSQAG 83
                     D ++ G PCQ FS+ G
Sbjct: 64 MWKGILKGKRIDGIIGGPPCQGFSRIG 90


>gi|254368945|ref|ZP_04984958.1| predicted protein [Francisella tularensis subsp. holarctica
          FSC022]
 gi|157121866|gb|EDO66036.1| predicted protein [Francisella tularensis subsp. holarctica
          FSC022]
          Length = 69

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          ++K+   F G GG+ L  E+       +  +++E +    +TY+ N PNT++    I  I
Sbjct: 4  IMKVVSFFSGAGGLDLGFERA----GFDIIWANEFDKEIWETYEKNHPNTILDRRSIVNI 59

Query: 60 KTQDI 64
             + 
Sbjct: 60 HESEF 64


>gi|167043721|gb|ABZ08413.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
          crenarchaeote HF4000_APKG3B16]
          Length = 377

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLIFG 54
           +  L+ G GG  L  +        E  + ++ N  +  T + NF           +  G
Sbjct: 5  TLISLYSGCGGSALGFQNA----GFEITYMNDNNADACYTLKENFEKPSANPDRQVVHRG 60

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          ++  +        D++  GFPCQ FS AG
Sbjct: 61 NVKDV--FQFGSADIIEGGFPCQGFSLAG 87


>gi|17225517|gb|AAL37447.1|AF328915_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N T I GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNATGICGDIT 56

Query: 58 KIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
          +I+ ++         + ++++ G PCQ FS  G
Sbjct: 57 QIEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|150396423|ref|YP_001326890.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027938|gb|ABR60055.1| DNA-cytosine methyltransferase [Sinorhizobium medicae WSM419]
          Length = 632

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L + ++  G GG+ L LE+       E     E + ++  T + N  + T+I  D+  + 
Sbjct: 280 LTVVEICAGAGGMSLGLERA----GFEHVALVEYDNHAAATLRRNRRDWTVIREDVRTMD 335

Query: 61  TQDIP--DHDVLLAGFPCQPFSQAG 83
            +     + D++  G PCQP+S  G
Sbjct: 336 FRLYRQLEIDLVSGGPPCQPYSSDG 360


>gi|329113622|ref|ZP_08242401.1| Modification methylase HpaII [Acetobacter pomorum DM001]
 gi|326697068|gb|EGE48730.1| Modification methylase HpaII [Acetobacter pomorum DM001]
          Length = 389

 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAK 58
          M    + F G G  R  L          C F+++ +     +YQAN+     L  GD+  
Sbjct: 8  MPSFYEFFAGGGMARAGL-----GDGWTCLFANDFDHKKGLSYQANWGTGGELRVGDVND 62

Query: 59 IKTQDIPDH-DVLLAGFPCQPFS 80
          ++ +D+P   D++   FPCQ  S
Sbjct: 63 VRVEDLPGVADLVWGSFPCQDLS 85


>gi|303245411|ref|ZP_07331695.1| DNA-cytosine methyltransferase [Desulfovibrio fructosovorans JJ]
 gi|302493260|gb|EFL53122.1| DNA-cytosine methyltransferase [Desulfovibrio fructosovorans JJ]
          Length = 490

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 23/100 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PN--------TLIF 53
           ++ DLF G GGI L           E   + E++P +  ++  NF P+            
Sbjct: 19  RVLDLFAGCGGISLGFRTA----GYELRAAIEMDPVAAASHALNFYPDLEGEDKKRHAQS 74

Query: 54  GDIAKIKTQDI------PD----HDVLLAGFPCQPFSQAG 83
            DI K +          P+     DV++ G PCQ F++ G
Sbjct: 75  RDIVKTEPHSFMLEMGCPEPEEAIDVVVGGPPCQAFARVG 114


>gi|261837515|gb|ACX97281.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 355

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N T + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNATGVCGDIT 56

Query: 58 KIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
          +I+ ++         + ++++ G PCQ FS  G
Sbjct: 57 QIEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|22091184|ref|NP_665998.1| M.PhiCh1-II [Natrialba phage PhiCh1]
 gi|289594296|ref|YP_003482303.1| DNA-cytosine methyltransferase [Natrialba magadii ATCC 43099]
 gi|22003505|gb|AAM88754.1|AF440695_80 putative C5-cytosine methyltransferase [Natrialba phage PhiCh1]
 gi|289533393|gb|ADD07741.1| DNA-cytosine methyltransferase [Natrialba magadii ATCC 43099]
          Length = 283

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 23/100 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----------PNTL 51
               LF GIGG  L   +       +   + E N  +  TY+AN            P  L
Sbjct: 30  THVSLFSGIGGFDLGFSRA----GFKNLVAVEANQDAADTYRANLINDCENYGQDEPPVL 85

Query: 52  IFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
           +  DI K+ T +I +           +  G PCQ FS  G
Sbjct: 86  MERDITKVATWEILEAAGIGVGQLTAVSGGPPCQGFSHIG 125


>gi|315650253|ref|ZP_07903326.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
 gi|315487498|gb|EFU77807.1| modification methylase BbvI [Eubacterium saburreum DSM 3986]
          Length = 349

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTF-NHRNVECF--FSSEINPYSVKTYQANF----PNTLIF 53
          + ++ +LFCG GGI         N+ N      ++++ +  + KTY+ N     P T+  
Sbjct: 2  IFRLGELFCGPGGIGWGAINASINNPNYRIIHQWANDYDESTCKTYRYNICPNAPETVYH 61

Query: 54 GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI       +   D L  GFPC  +S  G
Sbjct: 62 ADIRTFDMSQLAPIDALAFGFPCNDYSVVG 91


>gi|329122250|ref|ZP_08250838.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
          11116]
 gi|327473811|gb|EGF19228.1| DNA (cytosine-5-)-methyltransferase [Haemophilus aegyptius ATCC
          11116]
          Length = 387

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M     +  GI      +   +   + +  + SEI P+       ++PN    GD+  + 
Sbjct: 1  MFTYGSICSGI----EAVSVAWKGLS-KPLWFSEIEPFPCAVLAYHYPNIPNLGDMTTLP 55

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    +IP  DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|317179558|dbj|BAJ57346.1| cytosine specific DNA methyltransferase [Helicobacter pylori F30]
          Length = 355

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N T + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNATGVCGDIT 56

Query: 58 KIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
          +I+ ++         + ++++ G PCQ FS  G
Sbjct: 57 QIEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|145630454|ref|ZP_01786235.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
           R3021]
 gi|144984189|gb|EDJ91626.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
           R3021]
          Length = 362

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           M     +  GI      +   +   + +  + SEI P+       ++PN    GD+  + 
Sbjct: 123 MFTYGSICSGI----EAVSVAWKGLS-KPLWFSEIEPFPCAVLAYHYPNIPNLGDMTTLP 177

Query: 61  TQ----DIPDHDVLLAGFPCQPFSQAG 83
            +    +IP  DVL+ G PCQ FS AG
Sbjct: 178 EKILNREIPAPDVLVGGTPCQAFSVAG 204


>gi|68249848|ref|YP_248960.1| modification methylase Bsp6I-like [Haemophilus influenzae
          86-028NP]
 gi|68058047|gb|AAX88300.1| modification methylase Bsp6I-like [Haemophilus influenzae
          86-028NP]
          Length = 387

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M     +  GI      +   +   + +  + SEI P+       ++PN    GD+  + 
Sbjct: 1  MFTYGSICSGI----EAVSVAWKGLS-KPLWFSEIEPFPCAVLAYHYPNIPNLGDMTTLP 55

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    +IP  DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIPAPDVLVGGTPCQAFSVAG 82


>gi|77412067|ref|ZP_00788393.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          CJB111]
 gi|77161872|gb|EAO72857.1| C-5 cytosine-specific DNA methylase [Streptococcus agalactiae
          CJB111]
          Length = 394

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 27 VECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          + C    E + ++ K+Y+A +         DI  I    +P  D+  AG PCQ  S AG
Sbjct: 1  MTCLGYCEKDKFARKSYEAMYDTEGEWFHDDITSIDPTRLPKADLWTAGSPCQNVSIAG 59


>gi|308062920|gb|ADO04807.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          Sat464]
          Length = 355

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + I GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNAIGICGDIT 56

Query: 58 KIKTQD-------IPDHDVLLAGFPCQPFSQAG 83
          +I+ ++         + ++++ G PCQ FS  G
Sbjct: 57 QIEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|268611949|ref|ZP_06145676.1| DNA-cytosine methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 352

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GI    L L++      VEC+ + EI+ Y+V   + NFP  +  G++     
Sbjct: 1  MKVLSLFDGISCGMLALQRAG--IPVECYDAFEIDKYAVTVSKRNFPVIVHHGNVYDGDF 58

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
               +D+LL G PC  +S A
Sbjct: 59 TQFRGYDLLLGGSPCTYWSIA 79


>gi|121634611|ref|YP_974856.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|4887086|gb|AAD32180.1|AF125564_2 putative site specific DNA methyltransferase [Neisseria
           meningitidis]
 gi|120866317|emb|CAM10058.1| putative modification methylase [Neisseria meningitidis FAM18]
 gi|325132026|gb|EGC54724.1| DNA-cytosine methyltransferase [Neisseria meningitidis M6190]
 gi|325135954|gb|EGC58564.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325137780|gb|EGC60355.1| DNA-cytosine methyltransferase [Neisseria meningitidis ES14902]
 gi|325142075|gb|EGC64502.1| DNA-cytosine methyltransferase [Neisseria meningitidis 961-5945]
 gi|325198036|gb|ADY93492.1| DNA-cytosine methyltransferase [Neisseria meningitidis G2136]
 gi|325202381|gb|ADY97835.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240149]
 gi|325207867|gb|ADZ03319.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 411

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|119382891|ref|YP_913947.1| transposase IS116/IS110/IS902 family protein [Paracoccus
          denitrificans PD1222]
 gi|119372658|gb|ABL68251.1| transposase IS116/IS110/IS902 family protein [Paracoccus
          denitrificans PD1222]
          Length = 539

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGI-GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          + DLF G  GG  L L +           + EI  +    Y  NFP+  ++ DI  +   
Sbjct: 14 VLDLFSGAAGGWSLGLHRA----GFMTIAACEIVEWRRILYSENFPHVRLYADIRDLTAT 69

Query: 63 DIPD-----HDVLLAGFPCQPFSQA 82
           +        D+++   PCQ  S A
Sbjct: 70 RLVSDLGCLPDIVVGSPPCQDISSA 94


>gi|169825537|ref|YP_001695712.1| modification methylase [Lysinibacillus sphaericus C3-41]
 gi|168994814|gb|ACA42353.1| Modification methylase [Lysinibacillus sphaericus C3-41]
          Length = 296

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F G GG+ L + +      ++   S EI+  +  T + NF + +   DI KI   D  D 
Sbjct: 19 FSGAGGLDLGIIEA----GIDVIESFEIDKKACNTLRNNFKHIINETDITKITVLDQQDA 74

Query: 68 DVLLAGFPCQPFS 80
          DV +  FPC  +S
Sbjct: 75 DVYIGTFPCTKYS 87


>gi|304387865|ref|ZP_07370039.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|254670653|emb|CBA06706.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha153]
 gi|254672637|emb|CBA06420.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
 gi|261392815|emb|CAX50396.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis 8013]
 gi|304338130|gb|EFM04266.1| DNA (cytosine-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410190|emb|CBY90526.1| putative type II restriction-modification system enzyme Mod
           [Neisseria meningitidis WUE 2594]
 gi|325134031|gb|EGC56686.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325203903|gb|ADY99356.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240355]
          Length = 411

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    F+ +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|288919493|ref|ZP_06413824.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
 gi|288349096|gb|EFC83342.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
          Length = 640

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 11/86 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IKTQD 63
            DLF G GG+ L LEQ           + + N  +V+T++ANF    +  D+++     +
Sbjct: 44  VDLFSGAGGLSLGLEQA----GWTVVTAVDDNLRAVETHRANFRGRAVQLDLSEPAARNE 99

Query: 64  IP------DHDVLLAGFPCQPFSQAG 83
           +         D++  G PCQP+S+AG
Sbjct: 100 LLASLAGVKIDLVAGGPPCQPYSRAG 125


>gi|221120982|ref|XP_002166687.1| PREDICTED: similar to TRNA aspartic acid methyltransferase 1
          [Hydra magnipapillata]
          Length = 388

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          LK+ + + GIGG+   L       +VE  F  EIN  +   Y+ NFP  TL+  +I  + 
Sbjct: 5  LKVLEFYSGIGGVHYALTYAGVSVHVEAAF--EINTSANSVYRHNFPQTTLLQKNIEGLN 62

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
           +D+     DV     PCQP+++ G
Sbjct: 63 LEDLEHFNADVWTMSPPCQPYTRLG 87


>gi|167009508|ref|ZP_02274439.1| modification methylase HaeIII [Francisella tularensis subsp.
          holarctica FSC200]
          Length = 65

 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +K+   F G GG+ L  E+       +  +++E +    +TY+ N PNT++    I  I 
Sbjct: 1  MKVVSFFSGAGGLDLGFERA----GFDIIWANEFDKEIWETYEKNHPNTILDRRSIVNIH 56

Query: 61 TQDI 64
            + 
Sbjct: 57 ESEF 60


>gi|291299135|ref|YP_003510413.1| DNA-cytosine methyltransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290568355|gb|ADD41320.1| DNA-cytosine methyltransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 437

 Score = 77.1 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 25/98 (25%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----------------F 47
            +LF G GG    L  + +         +E    + +T +AN                 +
Sbjct: 15  VELFAGAGG----LAMSVHAAGFRPLLVNEFAKRACETLRANGAVDRGDDLSVPDPGGPW 70

Query: 48  PNTLIFGDIAKIKTQDIPD--HDVLLAGFPCQPFSQAG 83
           P  L+ GD+ ++K + + +   DVL  G PCQPFS  G
Sbjct: 71  P--LVEGDVRQVKFEYLAEAGVDVLAGGPPCQPFSLGG 106


>gi|291544930|emb|CBL18039.1| Site-specific DNA methylase [Ruminococcus sp. 18P13]
          Length = 362

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+  LF GI    L L++      VEC+ + EI+ Y+V   + NFP  +  G++     
Sbjct: 1  MKVLSLFDGISCGMLALQRAG--IPVECYDAFEIDKYAVTVSKRNFPVIVHHGNVYDGDF 58

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
               +D+LL G PC  +S A
Sbjct: 59 TQFKGYDLLLGGSPCTYWSIA 79


>gi|332970699|gb|EGK09680.1| modification methylase HphIA [Kingella kingae ATCC 23330]
          Length = 149

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           + DLFCG GG+ L   Q       +     +    ++KTY A   NT  I  D+     
Sbjct: 6  TVLDLFCGCGGLSLGFIQA----GFDVKLGIDAWQDAIKTYTATHQNTQGIVADLFTTTP 61

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          + I         DV++ G PCQ FS AG
Sbjct: 62 EQISQQTQINQIDVIIGGPPCQGFSIAG 89


>gi|255640237|gb|ACU20409.1| unknown [Glycine max]
          Length = 385

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L +     N +   + EIN  +   YQ NF +    G+I  +   
Sbjct: 13 RVLEFYSGIGGMRYSLMKA--QVNAQVVQAFEINDTANDVYQHNFGHRPYQGNIQCLTAA 70

Query: 63 DIPD--HDVLLAGFPCQPFSQAG 83
          D+     D  L   PCQP+++ G
Sbjct: 71 DLDKYGADAWLLSPPCQPYTRQG 93


>gi|254804928|ref|YP_003083149.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|254668470|emb|CBA05754.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
          Length = 312

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE+             EI P + +T + N P+  +I GD+   +
Sbjct: 3  FTSLEICAGAGGQALGLERA----GFSHVALIEIEPSACQTLRLNRPDWNVIEGDVRLFQ 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D+L  G PC PFS+AG
Sbjct: 59 GKGYDGIDLLAGGVPCPPFSKAG 81


>gi|315636653|ref|ZP_07891886.1| modification methylase Eco47II [Arcobacter butzleri JV22]
 gi|315479079|gb|EFU69779.1| modification methylase Eco47II [Arcobacter butzleri JV22]
          Length = 411

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFS 80
               +E    +EI+ Y+V+T + N P+  +   D++KI         D+L  GFPCQ FS
Sbjct: 90  EKAGIEHILLNEIDKYAVQTLKRNRPHWKIEHSDVSKIDFTSYKNKIDLLTGGFPCQAFS 149

Query: 81  QAG 83
            AG
Sbjct: 150 YAG 152


>gi|156741374|ref|YP_001431503.1| DNA-cytosine methyltransferase [Roseiflexus castenholzii DSM
          13941]
 gi|156232702|gb|ABU57485.1| DNA-cytosine methyltransferase [Roseiflexus castenholzii DSM
          13941]
          Length = 387

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          L   + F G G  R+ L          C F+++I+P     Y+ NF     L+  DI ++
Sbjct: 4  LTFYEFFAGGGLARIGL-----GPQWTCLFANDIDPKKADVYRRNFSGAPELVVADIHRV 58

Query: 60 KTQDIPDHDVL-LAGFPCQPFSQAG 83
           T  +P   +L  A FPCQ  S AG
Sbjct: 59 TTDMLPGRALLAWASFPCQDLSLAG 83


>gi|34451612|gb|AAQ72361.1| BsaWI methylase [Geobacillus stearothermophilus]
          Length = 411

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I D F G GGI             E   + E+    V+TY AN  +  +   DI  +  +
Sbjct: 7  IIDCFSGPGGICTGFRAA----GFETLLAIELVESCVETYTANHKDVPVINKDIRDVTEE 62

Query: 63 DIPD------HDVLLAGFPCQPFSQAG 83
          ++         D+L AG PC+ FS AG
Sbjct: 63 EVKRIVGNRVVDILTAGMPCETFSTAG 89


>gi|282859820|ref|ZP_06268914.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
 gi|282587440|gb|EFB92651.1| DNA (cytosine-5-)-methyltransferase [Prevotella bivia JCVIHMP010]
          Length = 356

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCGIGG+     Q       +     + +      Y+ N        DI K+  
Sbjct: 6  IKVVDLFCGIGGLSNGFFQ----EGFDVVAGYDNDKSCKFAYEVNNHAKFHLADITKVTG 61

Query: 62 QDIPDH--D---VLLAGFPCQPFS 80
          ++I     D   +L+   PCQPFS
Sbjct: 62 KEINQQFGDSLKILVGCAPCQPFS 85


>gi|256078707|ref|XP_002575636.1| DNA (cytosine-5)-methyltransferase [Schistosoma mansoni]
 gi|238660878|emb|CAZ31869.1| DNA (cytosine-5)-methyltransferase, putative [Schistosoma
          mansoni]
          Length = 368

 Score = 77.1 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ +L+ GIGG+ +  +++      E   + EIN  +   Y+ NFPNTL      ++  
Sbjct: 1  MRVLELYSGIGGMHIAFKESTVKH--EVVAAVEINGVATDVYKYNFPNTLTLN---RVIE 55

Query: 62 QDIPD------HDVLLAGFPCQPFSQAG 83
             PD       +V     PCQPF++ G
Sbjct: 56 SFSPDYVCSLNANVWSLCPPCQPFTRLG 83


>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
 gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
          Length = 657

 Score = 77.1 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 14/91 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAK 58
            + DLFCG GG+     +           + + +P ++KT   N P       I  D+ +
Sbjct: 264 TVVDLFCGAGGLSEGFTRA----GFRLVAAVDRDPVALKTLWLNHPSLGRERTISTDVRE 319

Query: 59  IKTQDIPD------HDVLLAGFPCQPFSQAG 83
           +    +         DVL+   PCQ FS  G
Sbjct: 320 LAPARLKKLLGRRRLDVLVGAPPCQGFSTVG 350


>gi|224092438|ref|XP_002309610.1| DNA methyltransferase [Populus trichocarpa]
 gi|222855586|gb|EEE93133.1| DNA methyltransferase [Populus trichocarpa]
          Length = 350

 Score = 77.1 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L +     N +   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 3  RVLEFYSGIGGMRYSLMKAG--VNAKVVEAFDINDKANDVYEYNFGHRPYQGNIETLTAA 60

Query: 63 DIPD--HDVLLAGFPCQPFSQAG 83
          D+ +      L   PCQP+++ G
Sbjct: 61 DLDNYGAHTWLLSPPCQPYTRQG 83


>gi|108562472|ref|YP_626788.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          HPAG1]
 gi|107836245|gb|ABF84114.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          HPAG1]
          Length = 355

 Score = 77.1 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE+         ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLERLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|331085773|ref|ZP_08334856.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406696|gb|EGG86201.1| hypothetical protein HMPREF0987_01159 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 356

 Score = 76.7 bits (189), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +   DLF G GG+                   + +  ++ T+  N    +    D++K +
Sbjct: 1  MNAIDLFAGCGGLSKGFMDA----GYNIIVGVDNDQAALNTFAKNHNGAVALNADLSKQE 56

Query: 61 T-QDI------PDHDVLLAGFPCQPFSQAG 83
          T  +I         DV++AG PCQ FS  G
Sbjct: 57 TFDEIKRIAGKRKIDVIIAGPPCQGFSLTG 86


>gi|29350162|ref|NP_813665.1| putative cytosine-specific methyltransferase [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|29342074|gb|AAO79859.1| putative cytosine-specific methyltransferase [Bacteroides
          thetaiotaomicron VPI-5482]
          Length = 402

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 22/99 (22%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---------FPNTLIF 53
             D+F G GG+ L L         +  F+ E N  + KT + N         +P+ L  
Sbjct: 5  TYIDIFAGCGGLSLGLHNA----GWQGLFAVEKNADAFKTLEYNLIEKVNHFLWPDWLPK 60

Query: 54 --GDI----AKIKTQDI---PDHDVLLAGFPCQPFSQAG 83
             DI       K Q +      D+++ G PCQ FS AG
Sbjct: 61 TSHDINVVLKDYKEQLLGLQRKVDLVVGGPPCQGFSMAG 99


>gi|296445050|ref|ZP_06887011.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
 gi|296257471|gb|EFH04537.1| DNA-cytosine methyltransferase [Methylosinus trichosporium OB3b]
          Length = 380

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
          + F G G +R  L          C  +++ +     +Y+AN+   TL+  D+  ++   +
Sbjct: 7  EFFAGGGMVRAGL-----GAGWRCLLANDFDARKCASYRANWGGETLVERDVRDLQASQL 61

Query: 65 PD-HDVLLAGFPCQPFS 80
          P   D++ A FPCQ  S
Sbjct: 62 PGLADLVWASFPCQDLS 78


>gi|169834887|ref|YP_001715830.1| modification methylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408994|gb|ACA57404.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum A3
          str. Loch Maree]
          Length = 284

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+     F G GG+ L L Q      +    S EI+     T + NF + +   DI+KI 
Sbjct: 1  MITAKSYFSGAGGMDLGLVQA----GINITHSYEIDSTCCNTLRTNFTHEIHQEDISKIT 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            D  D D+ +  FPC  +S
Sbjct: 57 VLDQQDADIYVGTFPCTKYS 76


>gi|189350232|ref|YP_001945860.1| DNA (cytosine-5-)-methyltransferase [Burkholderia multivorans
          ATCC 17616]
 gi|189334254|dbj|BAG43324.1| DNA (cytosine-5-)-methyltransferase [Burkholderia multivorans
          ATCC 17616]
          Length = 380

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +   +  GI          ++       F SEI P+       ++P+    GD+   K 
Sbjct: 3  FRFGSVCSGI----EAASCAWHPLGWRTAFVSEIEPFPCAVLAHHYPSVPNLGDMTNFK- 57

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           + PD   D+L+ G PCQ FS AG
Sbjct: 58 -EWPDAAIDLLVGGTPCQSFSVAG 80


>gi|157953822|ref|YP_001498713.1| hypothetical protein AR158_C632R [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068470|gb|ABU44177.1| hypothetical protein AR158_C632R [Paramecium bursaria Chlorella
          virus AR158]
          Length = 348

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L+  DLF GIGGI   L +      VE     E N  +    +   P   +F D+     
Sbjct: 3  LRALDLFSGIGGITHGLREI-----VEPIAFVEKNDEARSFLKKKHPEIPVFDDVCSFDA 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ I   D++LAG+PC  FS AG
Sbjct: 58 TKWIDKVDIILAGWPCTGFSNAG 80


>gi|94958344|gb|ABF47306.1| Dcm [Clostridium perfringens]
 gi|94958377|gb|ABF47337.1| Dcm [Clostridium perfringens]
          Length = 339

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLITYGFPCTDISLAG 82


>gi|283834911|ref|ZP_06354652.1| C-5 cytosine-specific DNA methylase family protein [Citrobacter
           youngae ATCC 29220]
 gi|291069174|gb|EFE07283.1| C-5 cytosine-specific DNA methylase family protein [Citrobacter
           youngae ATCC 29220]
          Length = 400

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 18/93 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
           +K  DLF G GG  L          ++   + E++  +  TY+ N          L+  D
Sbjct: 14  IKAIDLFSGAGGFSL----AALELGIDVLSAIELDKDACDTYRDNLIRKRENNIKLLNQD 69

Query: 56  IAKIKTQDI--------PDHDVLLAGFPCQPFS 80
           I  I    +         + D+++ G PCQ FS
Sbjct: 70  IMSISPMSMMEDLFLLEGELDIIIGGPPCQGFS 102


>gi|297812763|ref|XP_002874265.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata]
 gi|297320102|gb|EFH50524.1| DNA methyltransferase-2 [Arabidopsis lyrata subsp. lyrata]
          Length = 383

 Score = 76.7 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L  +      E   + EIN  +   YQ NF +    G+I  +   
Sbjct: 16 RVLEFYSGIGGMRYSLMASGVVA--EVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAV 73

Query: 63 DIPD--HDVLLAGFPCQPFSQAG 83
          D+     D  L   PCQP+++ G
Sbjct: 74 DLDKYNADAWLLSPPCQPYTRQG 96


>gi|309789600|ref|ZP_07684181.1| BsaWI methylase [Oscillochloris trichoides DG6]
 gi|308228336|gb|EFO81983.1| BsaWI methylase [Oscillochloris trichoides DG6]
          Length = 436

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
           ++F G GG+ L L  +          + E     VKTY+ N P T+ I  D+  I ++ +
Sbjct: 18  EMFTGPGGLSLGLRSS----GFHVVGAVEKVESCVKTYRRNHPETIVIHDDVRNITSEQV 73

Query: 65  ----------PDHDVLLAGFPCQPFSQAG 83
                        D++  G PC+ FS AG
Sbjct: 74  ISIVLKVTGKKTVDLVAGGPPCETFSTAG 102


>gi|224539035|ref|ZP_03679574.1| hypothetical protein BACCELL_03935 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519363|gb|EEF88468.1| hypothetical protein BACCELL_03935 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 345

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAK 58
          +K+   DLF G+GG+   L +       +   + EI+  +   Y+ N   T +  D I  
Sbjct: 1  MKLYSIDLFSGVGGLTQGLRKA----GFQTKMAFEIDELASSVYKLNHKRTKVITDNIRN 56

Query: 59 IKTQDIPD------HDVLLAGFPCQPFS 80
          + T+ +          +L    PCQ FS
Sbjct: 57 VSTEKVKKQFKGKTIHLLAGCPPCQGFS 84


>gi|325127899|gb|EGC50802.1| DNA-cytosine methyltransferase [Neisseria meningitidis N1568]
          Length = 411

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    FS +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|169834680|ref|YP_001693292.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
 gi|169123228|gb|ACA47063.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1
          str. Okra]
          Length = 284

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+     F G GG+ L L Q      +    S EI+     T + NF + +   DI+KI 
Sbjct: 1  MITAKSYFSGAGGMDLGLVQA----GINITHSYEIDSTCCNTLRTNFTHEIHQEDISKIT 56

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
            D  D D+ +  FPC  +S
Sbjct: 57 VLDQQDADIYVGTFPCTRYS 76


>gi|73948982|ref|XP_848593.1| PREDICTED: similar to DNA (cytosine-5)-methyltransferase-like
          protein 2 (Dnmt2) (DNA methyltransferase homolog
          HsaIIP) (DNA MTase homolog HsaIIP) (M.HsaIIP) (PuMet)
          isoform 2 [Canis familiaris]
          Length = 391

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D     ++L   PCQPF++ G
Sbjct: 60 ITLEEFDKLSFNMILMSPPCQPFTRIG 86


>gi|326790943|ref|YP_004308764.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326541707|gb|ADZ83566.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 292

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + +  LF GI    + LE+      V+ +++SEI   S+K  + N+P  +  GDI  I  
Sbjct: 1  MNVLSLFDGISCGMVALERAGIK--VDNYYASEIEQDSIKISKKNYPWIIQLGDITNITK 58

Query: 62 Q---DIPDHDVLLAGFPCQPFSQ 81
          +    I   D+++ G PCQ  S 
Sbjct: 59 EMLDTIMPIDIVIGGSPCQDLSV 81


>gi|15676724|ref|NP_273868.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|7226061|gb|AAF41239.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis MC58]
 gi|308389005|gb|ADO31325.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha710]
 gi|316984499|gb|EFV63467.1| modification methylase HpaII [Neisseria meningitidis H44/76]
 gi|325129944|gb|EGC52743.1| DNA-cytosine methyltransferase [Neisseria meningitidis OX99.30304]
 gi|325140023|gb|EGC62552.1| DNA-cytosine methyltransferase [Neisseria meningitidis CU385]
 gi|325206334|gb|ADZ01787.1| DNA-cytosine methyltransferase [Neisseria meningitidis M04-240196]
          Length = 411

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    FS +I+PY  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|168207074|ref|ZP_02633079.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|170661488|gb|EDT14171.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +++  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MRVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDKYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +  +   D D++  GFPC   S AG
Sbjct: 57 LVDGKVFKDIDLVTYGFPCTDISLAG 82


>gi|325144138|gb|EGC66445.1| DNA-cytosine methyltransferase [Neisseria meningitidis M01-240013]
 gi|325200491|gb|ADY95946.1| DNA-cytosine methyltransferase [Neisseria meningitidis H44/76]
          Length = 406

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F+  + N    FS +I+PY  K+Y  N+         DI 
Sbjct: 33  IRLATVFSGIG----AVEQAFHRLNLNHTIVFSGDIDPYVKKSYLGNYKLNEDFWHNDIT 88

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 89  QFDARKFRNQVDILVGGSPCQAFSMVG 115


>gi|260583507|ref|ZP_05851255.1| modification methylase HphIA [Granulicatella elegans ATCC 700633]
 gi|260158133|gb|EEW93201.1| modification methylase HphIA [Granulicatella elegans ATCC 700633]
          Length = 103

 Score = 76.7 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + DLF G+GG    L + F     E   ++E++      Y+ N P   +I  DI+K+   
Sbjct: 5  VIDLFFGVGG----LSKEFFDSGFEIVLANEVDYSIANFYKKNHPKVKMINEDISKLDID 60

Query: 63 DI----PDHDVLLAGFPCQPFSQAG 83
          D+     + DV++ G PCQ FSQ G
Sbjct: 61 DVFNEYKNIDVIVWGPPCQGFSQKG 85


>gi|157953266|ref|YP_001498157.1| hypothetical protein AR158_C075L [Paramecium bursaria Chlorella
          virus AR158]
 gi|156067914|gb|ABU43621.1| hypothetical protein AR158_C075L [Paramecium bursaria Chlorella
          virus AR158]
          Length = 343

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+  DLF GIGG    L        ++     E   +        FP+  IF D+    
Sbjct: 4  MLRSLDLFSGIGGNSYALRDI-----LKPIAYVEREQHLRDFLGRKFPDVPIFDDVVTFD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ + D D++ AGFPC  FS AG
Sbjct: 59 TRSVKDIDIITAGFPCTGFSTAG 81


>gi|228931114|ref|ZP_04094051.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228828566|gb|EEM74265.1| Phage-related DNA methylase [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 221

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQ--ANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPF 79
              + +C    E + ++ K+Y+   N        DI  I    IP  DV   GFPC   
Sbjct: 1  MEEASHKCIGYVEWDKFARKSYESIHNTRGEWTEHDINNIIPGAIPKADVWTFGFPCTDI 60

Query: 80 SQA 82
          S A
Sbjct: 61 SIA 63


>gi|296081999|emb|CBI21004.3| unnamed protein product [Vitis vinifera]
          Length = 366

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L++     N +   + +IN  +   YQ NF +    G+I  +   
Sbjct: 15 RVLEFYSGIGGMRYSLKRGG--VNAKIVEAFDINNIANDVYQHNFGHRPCQGNIQSLTAA 72

Query: 63 DIP--DHDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 73 DLDRYRAHAWLLSPPCQPYTRQG 95


>gi|219848287|ref|YP_002462720.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542546|gb|ACL24284.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
           + DLF G GG+          +      + E +P + +TY  N P   ++  DI  I  
Sbjct: 8  TMIDLFAGCGGVTTGF----KAKGFNVLAAVEFDPVTAQTYHLNHPEVALYVQDIRDISP 63

Query: 62 QDI--------PDHDVLLAGFPCQPFS 80
           ++            VL    PCQPFS
Sbjct: 64 NEMMARCRLERGHLTVLSVCAPCQPFS 90


>gi|296243020|ref|YP_003650507.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
 gi|296095604|gb|ADG91555.1| DNA-cytosine methyltransferase [Thermosphaera aggregans DSM
          11486]
          Length = 323

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
            + DLFCG GG  L    T   R      + +    +  TY+ NFP   ++  DI  + 
Sbjct: 4  YTVVDLFCGAGGFSLGFHLT---RRFRTLLAIDNYNPAGLTYKLNFPMVKVLLEDIKDVN 60

Query: 61 TQDIP------DHDVLLAGFPCQPFSQA 82
             +         DVL+   PC+PF+ A
Sbjct: 61 DSLLRKILGGAKIDVLIGSPPCEPFTGA 88


>gi|299145238|ref|ZP_07038306.1| putative cytosine-specific methyltransferase protein [Bacteroides
          sp. 3_1_23]
 gi|298515729|gb|EFI39610.1| putative cytosine-specific methyltransferase protein [Bacteroides
          sp. 3_1_23]
          Length = 402

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 28/102 (27%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------------FPN 49
             D+F G GG+ L L         +  F+ E N  + KT + N             FP 
Sbjct: 5  TYIDIFAGCGGLSLGLHNA----GWQGLFAVEKNADAFKTLEYNLIKKVNHFLWPDWFPK 60

Query: 50 TLIFGDIAKIKTQDIPD--------HDVLLAGFPCQPFSQAG 83
          T    DI  +  +D  +         D+++ G PCQ FS AG
Sbjct: 61 TSH--DI-NVVLKDYKEQLLGLQQKVDLVVGGPPCQGFSMAG 99


>gi|168211060|ref|ZP_02636685.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|170710923|gb|EDT23105.1| Dcm [Clostridium perfringens B str. ATCC 3626]
          Length = 339

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLVTYGFPCTDISLAG 82


>gi|304383753|ref|ZP_07366212.1| modification methylase HgiDII [Prevotella marshii DSM 16973]
 gi|304335277|gb|EFM01548.1| modification methylase HgiDII [Prevotella marshii DSM 16973]
          Length = 360

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   +      +        +I+      Y+ N     I+ DI  +  
Sbjct: 14 IEVIDLFCGIGGLSFGM----KSKGFNILAGYDIDATCRYAYETNNNAKFIYKDIKTVSP 69

Query: 62 QDIP------DHDVLLAGFPCQPFS 80
           +I          VL    PCQPFS
Sbjct: 70 DEIRTAYGKGSIRVLAGCAPCQPFS 94


>gi|307152624|ref|YP_003888008.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982852|gb|ADN14733.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 708

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-TQ 62
           + DLF G GG+ L  E        +     E++  +  TYQ N        +I   +   
Sbjct: 34  VIDLFAGCGGLALGFEAA----GFKTTGY-EMSEEACATYQYNL--HGRCENITLTRYPT 86

Query: 63  DIPDHDVLLAGFPCQPFSQAG 83
            I +  V++AG PCQPFS+ G
Sbjct: 87  LIDNPKVIIAGPPCQPFSKGG 107


>gi|114629608|ref|XP_001151654.1| PREDICTED: DNA methyltransferase 2 isoform 1 [Pan troglodytes]
          Length = 377

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|168206682|ref|ZP_02632687.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|190015777|ref|YP_001967782.1| probable site-specific DNA-methyltransferase [Clostridium
          perfringens]
 gi|86450199|gb|ABC96308.1| probable site-specific DNA-methyltransferase [Clostridium
          perfringens]
 gi|170661882|gb|EDT14565.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLVTYGFPCTDISLAG 82


>gi|114629600|ref|XP_001151907.1| PREDICTED: DNA methyltransferase 2 isoform 5 [Pan troglodytes]
 gi|332833684|ref|XP_001151840.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 4 [Pan
          troglodytes]
 gi|29126973|gb|AAH47733.1| TRNA aspartic acid methyltransferase 1 [Homo sapiens]
          Length = 391

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|2895945|gb|AAC39764.1| putative DNA cytosine methyltransferase DNMT2 [Homo sapiens]
          Length = 391

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|13096616|pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
          Methyltransferase Homologue
          Length = 343

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 3  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 60

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 61 LEEFDRLSFDMILMSPPCQPFTRIG 85


>gi|4758184|ref|NP_004403.1| tRNA (cytosine-5-)-methyltransferase [Homo sapiens]
 gi|17374834|sp|O14717|TRDMT_HUMAN RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2; AltName: Full=DNA methyltransferase
          homolog HsaIIP; Short=DNA MTase homolog HsaIIP;
          Short=M.HsaIIP; AltName: Full=PuMet
 gi|2627431|gb|AAC51939.1| putative DNA methyltransferase [Homo sapiens]
 gi|2894544|emb|CAA11272.1| DNA methyltransferase [Homo sapiens]
 gi|7576230|emb|CAB87964.1| tRNA aspartic acid methyltransferase 1 [Homo sapiens]
 gi|47496579|emb|CAG29312.1| DNMT2 [Homo sapiens]
 gi|119606623|gb|EAW86217.1| hCG23994, isoform CRA_a [Homo sapiens]
 gi|158256270|dbj|BAF84106.1| unnamed protein product [Homo sapiens]
 gi|167887559|gb|ACA05983.1| tRNA aspartic acid methyltransferase 1 variant 3 [Homo sapiens]
 gi|167887563|gb|ACA05987.1| tRNA aspartic acid methyltransferase 1 variant 4 [Homo sapiens]
          Length = 391

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           ++      D++L   PCQPF++ G
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTRIG 86


>gi|148658198|ref|YP_001278403.1| DNA-cytosine methyltransferase [Roseiflexus sp. RS-1]
 gi|148570308|gb|ABQ92453.1| DNA-cytosine methyltransferase [Roseiflexus sp. RS-1]
          Length = 395

 Score = 76.3 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
          L   + F G G  R  L      R   C F+++I+    + YQ NF     ++  DI  I
Sbjct: 4  LTFYEFFAGGGLARFGL-----GRQWTCLFANDIDEKKAEVYQRNFSGAPEMVVEDIRHI 58

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
           T  +P    +  A FPCQ  S AG
Sbjct: 59 TTAMLPGRATLAWASFPCQDLSLAG 83


>gi|108763142|ref|YP_631786.1| DNA-cytosine methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467022|gb|ABF92207.1| DNA-cytosine methyltransferase [Myxococcus xanthus DK 1622]
          Length = 505

 Score = 76.0 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLI 52
           L++ DLF G GG+ L                 EI+ ++ +++  NF         P   +
Sbjct: 18  LRLLDLFSGCGGLTLGFVSA----GCVSVGGVEIDAHAAESHALNFHPLKDRSAAPWHAM 73

Query: 53  FGDIAKIKTQDIPD---------HDVLLAGFPCQPFSQAG 83
             DI ++K   +            DV++ G PC  F++ G
Sbjct: 74  SKDILQLKPSSLNHLLKRPPNEGVDVIVGGPPCPAFTRVG 113


>gi|210630626|ref|ZP_03296529.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
 gi|210160401|gb|EEA91372.1| hypothetical protein COLSTE_00414 [Collinsella stercoris DSM 13279]
          Length = 402

 Score = 76.0 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-- 61
             DLF G GG+ L           +   S++I P  +KT+ AN     I GDI+  +   
Sbjct: 140 FIDLFAGAGGLALGFVWA----GWQPVVSNDIVPDFLKTHAANIDGATICGDISDPEILN 195

Query: 62  ----------QDIPDHDV-LLAGFPCQPFSQA 82
                     +D PD  + +L G PCQ FS A
Sbjct: 196 SICDAAAKFRKDNPDSPLFVLGGPPCQGFSTA 227


>gi|147856667|emb|CAN80315.1| hypothetical protein VITISV_020760 [Vitis vinifera]
          Length = 1148

 Score = 76.0 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ + + GIGG+R  L++     N +   + +IN  +   YQ NF +    G+I  +   
Sbjct: 865 RVLEFYSGIGGMRYSLKRGG--VNAKIVEAFDINNIANDVYQHNFGHRPYQGNIQSLTAA 922

Query: 63  DIP--DHDVLLAGFPCQPFSQAG 83
           D+        L   PCQP+++ G
Sbjct: 923 DLDRYRAHAWLLSPPCQPYTRQG 945


>gi|67920370|ref|ZP_00513890.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
 gi|67857854|gb|EAM53093.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH
          8501]
          Length = 339

 Score = 76.0 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG+ L  E     +  E +   E       +Y+ N         I       
Sbjct: 23 VLDLFAGCGGLSLGFEA----QGFETYGF-EKEQDCCHSYEKNLRGKCEQ--IELTVNSK 75

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +    V++ G PCQPFS  G
Sbjct: 76 LSGASVIIGGPPCQPFSVGG 95


>gi|332710686|ref|ZP_08430629.1| DNA-methyltransferase [Lyngbya majuscula 3L]
 gi|332350562|gb|EGJ30159.1| DNA-methyltransferase [Lyngbya majuscula 3L]
          Length = 450

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 33/108 (30%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQD 63
            DLF G GG  L +EQ       +   + E +P     Y  N P T +   DIA +  Q+
Sbjct: 11  VDLFAGAGGFSLGIEQA----GFDVALAVEQDPIHGAVYAFNSPQTKVLCTDIATLSGQE 66

Query: 64  IPDH----------------------------DVLLAGFPCQPFSQAG 83
           I                               D+++ G PCQ FS  G
Sbjct: 67  IQKALREWGTEREQNQHCTEVSSQVSTIDLVIDLVIGGPPCQGFSLIG 114


>gi|291535263|emb|CBL08375.1| DNA-methyltransferase (dcm) [Roseburia intestinalis M50/1]
          Length = 350

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECF--FSSEINPYSVKTYQANF----PNTLIFG 54
           ++ +LFCG GGI          + +      ++++ +  + +TY+ N     P T+   
Sbjct: 3  YRLGELFCGPGGIAWGATHADIGNSDYSIVHQWANDYDASTCETYRRNICPDAPQTVYHE 62

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          DI K     +   D L  GFPC  +S  G
Sbjct: 63 DIRKFDMSKLAPIDALAFGFPCNDYSVVG 91


>gi|317132208|ref|YP_004091522.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
 gi|315470187|gb|ADU26791.1| DNA-cytosine methyltransferase [Ethanoligenens harbinense YUAN-3]
          Length = 346

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTY--QANFPNTLIFGDIAK 58
          ++  D F GIGG    ++Q   N          EI+  + K Y    +   T    D+  
Sbjct: 5  IRFFDCFAGIGGFYYGVQQIKSNKYEFRHVAYCEIDKSAQKFYDVACSSEGTQKIQDVKD 64

Query: 59 IKTQDIP------DHDVLLAGFPCQPFSQAG 83
          IKT+  P      D D+L AGFPCQ FS  G
Sbjct: 65 IKTKKNPNGIMVSDFDILFAGFPCQSFSNVG 95


>gi|67540936|ref|XP_664242.1| hypothetical protein AN6638.2 [Aspergillus nidulans FGSC A4]
 gi|28208637|gb|AAO37378.1|AF428247_1 c5 cytosine methyltransferase DmtA [Emericella nidulans]
 gi|40738977|gb|EAA58167.1| hypothetical protein AN6638.2 [Aspergillus nidulans FGSC A4]
 gi|259480219|tpe|CBF71150.1| TPA: C5 cytosine methyltransferase DmtAPutative uncharacterized
           protein ; [Source:UniProtKB/TrEMBL;Acc:Q876R1]
           [Aspergillus nidulans FGSC A4]
          Length = 615

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKI- 59
               D FCG GG+    E       ++  ++ ++ P++  TY+ NFPN    G DI    
Sbjct: 309 YTFGDGFCGAGGVSCGAEAA----GLDIKWAFDLCPHAAATYRLNFPNVECEGSDIFSFM 364

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQA 82
              ++    D+     PCQ FS A
Sbjct: 365 TSNEEFMRVDISHGSPPCQTFSPA 388


>gi|213969524|ref|ZP_03397660.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|301385979|ref|ZP_07234397.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302059871|ref|ZP_07251412.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
 gi|302131547|ref|ZP_07257537.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          NCPPB 1108]
 gi|213925620|gb|EEB59179.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 406

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              + F G G  R  L          C ++++++     TY  N+        DI  +K
Sbjct: 12 FNFFEFFAGGGMARAGL-----GDEWNCLYANDMDHIKAATYINNWGGSHFDERDIHDVK 66

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
          T+D+  + D+  A FPCQ  S AG
Sbjct: 67 TEDLKSNSDLAWASFPCQDLSVAG 90


>gi|296112182|ref|YP_003622593.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
 gi|294341994|emb|CAZ90422.1| putative C-5 cytosine-specific DNA methylase [Thiomonas sp. 3As]
          Length = 304

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +K  DLF G GG      Q      VE  +++   P +V  + AN P  +    D+ +  
Sbjct: 1  MKAIDLFSGAGGFTEGARQA----GVEVCWAANHWPAAVACHSANHPEAVHACQDLEQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HDVL+A   CQ  S A
Sbjct: 57 WRAVPAHDVLMASPACQGHSPA 78


>gi|123965679|ref|YP_001010760.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9515]
 gi|123200045|gb|ABM71653.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9515]
          Length = 689

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK-TQD 63
            DLF G GG+ L L +     N +   + +I   S+ T++ +F       D++K K   +
Sbjct: 55  VDLFSGAGGLSLGLHRA----NFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVVNE 110

Query: 64  IPD-------HDVLLAGFPCQPFSQ 81
           I D         ++  G PCQPFS+
Sbjct: 111 IADKLNECGEISLIAGGPPCQPFSR 135


>gi|167747653|ref|ZP_02419780.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239625035|ref|ZP_04668066.1| modification methylase Rho11sI [Clostridiales bacterium
          1_7_47_FAA]
 gi|167653015|gb|EDR97144.1| hypothetical protein ANACAC_02374 [Anaerostipes caccae DSM 14662]
 gi|239521421|gb|EEQ61287.1| modification methylase Rho11sI [Clostridiales bacterium
          1_7_47FAA]
          Length = 504

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 27 VECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +     E + Y+VK+Y A      +   GDI K+  + +P  + +  G PCQ FS +G
Sbjct: 3  YKLINFCEFDKYAVKSYCAIHGVDESANLGDITKVDEKKLPYFNFICGGSPCQDFSLSG 61


>gi|288932478|ref|YP_003436538.1| DNA-cytosine methyltransferase [Ferroglobus placidus DSM 10642]
 gi|288894726|gb|ADC66263.1| DNA-cytosine methyltransferase [Ferroglobus placidus DSM 10642]
          Length = 301

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI D+F G GG      +       E   + +   ++V TY+ANF   +   D+     
Sbjct: 1  MKIADIFAGAGGFARGFVE----EKFEVVVAVDSFKHAVNTYKANFDADVFQVDVKNFSG 56

Query: 62 QDIPD--HDVLLAGFPCQPFSQA 82
          + + D   ++++A  PC+ F++A
Sbjct: 57 KMLKDYGVEMIIASPPCEAFTKA 79


>gi|182625480|ref|ZP_02953252.1| Dcm [Clostridium perfringens D str. JGS1721]
 gi|177909320|gb|EDT71778.1| Dcm [Clostridium perfringens D str. JGS1721]
          Length = 339

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLVTYGFPCTDISLAG 82


>gi|86475982|dbj|BAE79156.1| putative cytosine methyltransferase [Clostridium perfringens]
          Length = 339

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +   +  D D++  GFPC   S AG
Sbjct: 57 WVNGTNFKDIDLVTYGFPCTDISLAG 82


>gi|328947611|ref|YP_004364948.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328447935|gb|AEB13651.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 391

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              D F G GGI   L         E   + E     V TY  N P   +I  DI  + 
Sbjct: 3  FTHIDCFSGPGGICTGLHAA----GFETKVAIEFIKSCVDTYSKNHPEVHVIHSDIRNVS 58

Query: 61 TQDIPDH------DVLLAGFPCQPFSQAG 83
           + I         D++ +G PC+ FS AG
Sbjct: 59 KEQILPFIPKGGIDLVTSGMPCETFSTAG 87


>gi|332885826|gb|EGK06072.1| hypothetical protein HMPREF9456_02336 [Dysgonomonas mossii DSM
          22836]
          Length = 346

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-NFPNTLIFGDIAKIK 60
           K  D FCG GG+   L        +E     + +  + +TY+  N  +  I+ D+ ++ 
Sbjct: 5  YKAIDFFCGGGGMTCGLRLA----GIEVVAGVDFDKDAKETYEYNNIGSKFIYSDVTQLP 60

Query: 61 TQDIPDH------D---VLLAGFPCQPFSQ 81
          +     H      D   +L+   PCQ +S 
Sbjct: 61 SDYFEKHLNINKNDDHLILVGCSPCQYYSI 90


>gi|309783383|ref|ZP_07678091.1| C-5 cytosine-specific DNA methylase family protein [Ralstonia sp.
          5_7_47FAA]
 gi|330827391|ref|YP_004390629.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          K601]
 gi|308917844|gb|EFP63533.1| C-5 cytosine-specific DNA methylase family protein [Ralstonia sp.
          5_7_47FAA]
 gi|329312699|gb|AEB87113.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          K601]
          Length = 304

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          ++  DLF G GG                 +++   P +V+ +Q N P+T     D+ +  
Sbjct: 1  MRCIDLFAGAGGFTEGARLA----GARVVWAANHWPLAVQYHQTNHPDTWHECQDLQQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HDV+LA   CQ  S+A
Sbjct: 57 WRAVPAHDVVLASPACQGHSRA 78


>gi|242253856|ref|NP_001156357.1| tRNA (cytosine-5-)-methyltransferase [Sus scrofa]
 gi|226222432|gb|ACO38647.1| DNA methyltransferase 2 [Sus scrofa]
          Length = 408

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D     ++L   PCQPF++ G
Sbjct: 60 VTLEEFDRLSFNMVLMSPPCQPFTRIG 86


>gi|121582518|ref|YP_974050.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120608576|gb|ABM44315.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
          Length = 304

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          ++  DLF G GG                 +++   P +V+ +Q N P+T     D+ +  
Sbjct: 1  MRCIDLFAGAGGFTEGARLA----GARVVWAANHWPLAVQYHQTNHPDTWHECQDLQQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HDV+LA   CQ  S+A
Sbjct: 57 WRAVPAHDVVLASPACQGHSRA 78


>gi|213964765|ref|ZP_03392965.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
 gi|213952958|gb|EEB64340.1| modification methylase NaeI [Corynebacterium amycolatum SK46]
          Length = 333

 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------- 52
              ++  G GG  L LEQ   +       + E +  +  T + N  N L+         
Sbjct: 4  FTSLEICAGAGGQALGLEQAGFYH----VCTVENDRDACNTLRLNRDNDLVAAKQRWNVR 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            D+  +   D    D++  G PC PFS AG
Sbjct: 60 EDDVLNLNGADFKGVDLVAGGVPCPPFSIAG 90


>gi|313768404|ref|YP_004062084.1| hypothetical protein MpV1_201c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599100|gb|ADQ91124.1| hypothetical protein MpV1_201c [Micromonas sp. RCC1109 virus MpV1]
          Length = 351

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 27/109 (24%)

Query: 2   LKITDLFCGIGGIRLDL-EQTFNHRN-----------------------VECFFSSEINP 37
            K+  LF G+ G+ L   E+   HR+                           F ++I  
Sbjct: 3   YKVLSLFSGLAGLDLGFSERVIVHRDSVDEEFVESEAPTKDFVHLKQLPFTTVFQNDILK 62

Query: 38  YSVKTYQAN-FPNTLIFGDIAKIKTQ--DIPDHDVLLAGFPCQPFSQAG 83
            + +  + N + +  +  DI ++  +  + P+ DV+  GFPCQ FS +G
Sbjct: 63  SAKEIAEWNGWAHNYVLKDIKELLDENYEFPEADVVTGGFPCQDFSHSG 111


>gi|169342462|ref|ZP_02863522.1| Dcm [Clostridium perfringens C str. JGS1495]
 gi|169299461|gb|EDS81526.1| Dcm [Clostridium perfringens C str. JGS1495]
          Length = 339

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +KI  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKILSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLITYGFPCTDISLAG 82


>gi|308183851|ref|YP_003927984.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SJM180]
 gi|308059771|gb|ADO01667.1| cytosine specific DNA methyltransferase [Helicobacter pylori
          SJM180]
          Length = 355

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLEYLKEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIELAKKLEINMIIGGPPCQGFSNKG 89


>gi|294673127|ref|YP_003573743.1| C-5 cytosine-specific family DNA methylase [Prevotella ruminicola
          23]
 gi|294473723|gb|ADE83112.1| DNA methylase, C-5 cytosine-specific family [Prevotella
          ruminicola 23]
          Length = 346

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 27/96 (28%)

Query: 5  TDLFCGIGGIRLDLEQT---------FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
             F G GG+ +  +           F    VE   ++E   ++               D
Sbjct: 13 ISFFSGCGGLDIGTQMAGARIISTLDFEPATVETVKANEFFKFA----------EHNCAD 62

Query: 56 IAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
          I  +  +D         PD  +++ G PCQPFS+AG
Sbjct: 63 IRNVSGKDYSALLRSSNPDKLIIVGGPPCQPFSKAG 98


>gi|291539796|emb|CBL12907.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 107

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+ L LEQ+    N+      EIN  + +TY  N    ++  DI  I   +I
Sbjct: 11 IDLFCGAGGLSLGLEQS----NITVPLGVEINAIAAQTYTNNLNGNVLQDDIRNITGHEI 66

Query: 65 --------PDHDVLLAGFPCQPFS 80
                   +  +L    PCQ FS
Sbjct: 67 LEQLNLQVGELFLLAGCPPCQTFS 90


>gi|315604954|ref|ZP_07880010.1| modification methylase [Actinomyces sp. oral taxon 180 str.
          F0310]
 gi|315313349|gb|EFU61410.1| modification methylase [Actinomyces sp. oral taxon 180 str.
          F0310]
          Length = 322

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGD----I 56
          L   ++  G GG  L LEQ       +     EI+ ++  T + N P   +I GD    I
Sbjct: 3  LTSIEICAGAGGQALGLEQA----GFDHLAVVEIDHHACNTLRENRPQWNVIEGDVVPWI 58

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                +    D++  G PC PFS AG
Sbjct: 59 RD-HAHEYRGVDLVAGGVPCPPFSYAG 84


>gi|269129048|ref|YP_003302418.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM
          43183]
 gi|268314006|gb|ACZ00381.1| DNA-cytosine methyltransferase [Thermomonospora curvata DSM
          43183]
          Length = 418

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L + ++  G GG  L LE        +   + E++  +  T + N P   +  GD A + 
Sbjct: 4  LNVVEICAGAGGQSLGLELA----GFKHALAVELDANACNTLRLNRPEWKIAEGDAASLD 59

Query: 61 ---TQDIPDHDVLLAGFPCQPFSQAG 83
               D  + D+L  G PC PF+ AG
Sbjct: 60 VWNPADYQEIDLLAGGVPCPPFTIAG 85


>gi|155370467|ref|YP_001426001.1| hypothetical protein FR483_N369L [Paramecium bursaria Chlorella
          virus FR483]
 gi|155123787|gb|ABT15654.1| hypothetical protein FR483_N369L [Paramecium bursaria Chlorella
          virus FR483]
          Length = 342

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGGI   L        VE     E N  +        PN  +F D+    
Sbjct: 1  MLHAIDLFSGIGGITHGLRGI-----VEPVAYVEKNDDARGFLAQKHPNVPVFDDVCTFD 55

Query: 61 TQD-IPDHDVLLAGFPCQPFSQAG 83
              +   D++  G+PC  FS AG
Sbjct: 56 ATPYLGKVDIITGGWPCTGFSTAG 79


>gi|153008840|ref|YP_001370055.1| DNA-cytosine methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151560728|gb|ABS14226.1| DNA-cytosine methyltransferase [Ochrobactrum anthropi ATCC 49188]
          Length = 414

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFG-DIAKI 59
             +   F G GG                 F+SE    + +TY AN  P T++ G DI ++
Sbjct: 82  YNVISTFAGCGGSSTGYRMA----GFRVLFASEFIEAARETYLANARPGTIVDGRDIRQV 137

Query: 60  KTQDI--------PDHDVLLAGFPCQPFSQAG 83
              +I         + DV     PC  FS AG
Sbjct: 138 TADEILAATGLKPGELDVFDGSPPCASFSTAG 169


>gi|217032842|ref|ZP_03438321.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298737011|ref|YP_003729541.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
 gi|216945425|gb|EEC24089.1| hypothetical protein HPB128_165g1 [Helicobacter pylori B128]
 gi|298356205|emb|CBI67077.1| DNA (cytosine-5-)-methyltransferase [Helicobacter pylori B8]
          Length = 361

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG    LE+         ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLERLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 58 K--IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          +  IK + I        ++++ G PCQ FS  G
Sbjct: 57 QAAIKEKVIKLAQTLGINMIIGGPPCQGFSNKG 89


>gi|222149028|ref|YP_002549985.1| DNA methylase [Agrobacterium vitis S4]
 gi|221736013|gb|ACM36976.1| DNA methylase [Agrobacterium vitis S4]
          Length = 492

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 22/100 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFG----- 54
           L++ +L  G GG+ L L        ++     E +P +  TY  NF  P  +  G     
Sbjct: 19  LRVLELCSGCGGMSLGLHAA----GLQLVGHVEQDPTASATYARNFLPPEDVDAGQWQKP 74

Query: 55  -DIAKIKTQD------IPD----HDVLLAGFPCQPFSQAG 83
            D+ +   ++      +PD     DVL AG PCQ F++ G
Sbjct: 75  RDMVECSPEELAKDLGLPDASGAFDVLAAGLPCQAFARIG 114


>gi|242058009|ref|XP_002458150.1| hypothetical protein SORBIDRAFT_03g027700 [Sorghum bicolor]
 gi|241930125|gb|EES03270.1| hypothetical protein SORBIDRAFT_03g027700 [Sorghum bicolor]
          Length = 233

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L  +      E   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 8  RVLEFYSGIGGMRYSLMASGVRA--EVVEAFDINDVANDVYEHNFGHRPCQGNIQTLTAS 65

Query: 63 DIP--DHDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 66 DLDKYKAHAWLLSPPCQPYTRQG 88


>gi|220923821|ref|YP_002499123.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219948428|gb|ACL58820.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 358

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 18/92 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
          +++ DLFCG GG+ L           +   S +I+P    +YQ NF  +  +  DI+ + 
Sbjct: 1  MRLIDLFCGCGGLSLGARNA----GFKVVSSVDIDPILTSSYQRNFRGSRPLIADISSLT 56

Query: 61 TQDIPDHDVLLA---------GFPCQPFSQAG 83
            ++  H    A         G PCQ FS+AG
Sbjct: 57 RSELLRH----AGGHVDGVVGGPPCQGFSEAG 84


>gi|86140476|ref|ZP_01059035.1| modification methylase BepI-like [Leeuwenhoekiella blandensis
           MED217]
 gi|85832418|gb|EAQ50867.1| modification methylase BepI-like [Leeuwenhoekiella blandensis
           MED217]
          Length = 264

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 40/122 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTF---------------------------NHRNVECFFSSE 34
           L +  LF G GG+ L  E  F                                +  F+++
Sbjct: 38  LNMLSLFSGCGGMDLGFEGQFSVLKSSVNEILSPNFIEKELENNFVELKKTRFKTVFAND 97

Query: 35  INPYSVKTYQANFPNTLIFG---------DIAKIK---TQDIP-DHDVLLAGFPCQPFSQ 81
           I   +   +   F                D+ K+    T   P D D++  GFPCQ FS 
Sbjct: 98  ILKDARNAWVHYFAKRGHNAEDFQTDSIVDLVKLHQSGTNVFPKDIDIVTGGFPCQDFSV 157

Query: 82  AG 83
           AG
Sbjct: 158 AG 159


>gi|254421659|ref|ZP_05035377.1| C-5 cytosine-specific DNA methylase superfamily [Synechococcus
          sp. PCC 7335]
 gi|196189148|gb|EDX84112.1| C-5 cytosine-specific DNA methylase superfamily [Synechococcus
          sp. PCC 7335]
          Length = 427

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG+ L  EQ       +   + EI+P     ++ NFP   +I   + ++  ++
Sbjct: 12 IDLFAGAGGLCLGFEQA----GFDVPVAIEIDPIHAAVHRFNFPLCKVIPRSVKEVTGKE 67

Query: 64 IPDH---------DVLLAGFPCQPFSQAG 83
          I              ++ G PCQ FS  G
Sbjct: 68 ILSVAKLSSQQPITAVIGGAPCQGFSVMG 96


>gi|42766604|gb|AAS45432.1| At5g25480 [Arabidopsis thaliana]
          Length = 176

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + + + GIGG+R  L  +      E   + EIN  +   YQ NF +    G+I  +   D
Sbjct: 17 VLEFYSGIGGMRYSLMASGIVS--EVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAAD 74

Query: 64 IPD--HDVLLAGFPCQPFSQAG 83
          +     D  L   PCQP+++ G
Sbjct: 75 LDKYNADAWLLSPPCQPYTRQG 96


>gi|21553420|gb|AAM62513.1| DNA methyltransferase PMT1-like protein [Arabidopsis thaliana]
          Length = 383

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + + + GIGG+R  L  +      E   + EIN  +   YQ NF +    G+I  +   D
Sbjct: 17 VLEFYSGIGGMRYSLMASGIVS--EVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAAD 74

Query: 64 IPD--HDVLLAGFPCQPFSQAG 83
          +     D  L   PCQP+++ G
Sbjct: 75 LDKYNADAWLLSPPCQPYTRQG 96


>gi|18420929|ref|NP_568474.1| DNMT2 (DNA METHYLTRANSFERASE-2); DNA binding [Arabidopsis
          thaliana]
 gi|332006070|gb|AED93453.1| DNA methyltransferase-2 [Arabidopsis thaliana]
          Length = 383

 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + + + GIGG+R  L  +      E   + EIN  +   YQ NF +    G+I  +   D
Sbjct: 17 VLEFYSGIGGMRYSLMASGIVS--EVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAAD 74

Query: 64 IPD--HDVLLAGFPCQPFSQAG 83
          +     D  L   PCQP+++ G
Sbjct: 75 LDKYNADAWLLSPPCQPYTRQG 96


>gi|194765989|ref|XP_001965107.1| GF21561 [Drosophila ananassae]
 gi|190617717|gb|EDV33241.1| GF21561 [Drosophila ananassae]
          Length = 334

 Score = 75.2 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
           ++ +LF GIGG+    +        E   + ++N  +   Y  NF   T+   +I  + 
Sbjct: 3  FRVLELFSGIGGMHYAFQCA--QLEGEVVGAMDVNTVANAVYAHNFGQKTVKTRNIQSLT 60

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
           +++     +++L   PCQP ++ G
Sbjct: 61 EKEVTKVNANMILMSPPCQPHTRQG 85


>gi|159899163|ref|YP_001545410.1| C-5 cytosine-specific DNA methylase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892202|gb|ABX05282.1| C-5 cytosine-specific DNA methylase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 362

 Score = 75.2 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 1   MLKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----D 55
           +     +F G GG+ L  +Q    +   +   S +I+  +  + + +F N  +      D
Sbjct: 145 LFSALSIFSGAGGLNLGAQQAKLPNAKWQTIASIDIDRDACTSLEHHFANKNVICQNIID 204

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           I + K+      D+   G PCQ FSQAG
Sbjct: 205 ITQPKSLMSQPLDLSYGGPPCQSFSQAG 232


>gi|157164246|ref|YP_001466260.1| modification methylase HaeIII (cytosine-specificmethyltransferase
          HaeIII; M.HaeIII) [Campylobacter concisus 13826]
 gi|112801543|gb|EAT98887.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
          HaeIII) (M.HaeIII) [Campylobacter concisus 13826]
          Length = 388

 Score = 75.2 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 25/100 (25%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ---ANFPNTLIFGDIAKI 59
             DLF G GG+     Q             E++ Y+  T Q    ++       +I KI
Sbjct: 5  TFIDLFAGAGGMAEGFYQ----EGYMALTHIELDKYACLTLQERMRHYGYH--ENEINKI 58

Query: 60 KTQDI----------------PDHDVLLAGFPCQPFSQAG 83
          K  DI                 D DV++ G PCQ FS  G
Sbjct: 59 KPTDITDKNIISIIESNIGKTSDIDVIIGGPPCQSFSSHG 98


>gi|145207311|gb|AAI14323.2| TRNA aspartic acid methyltransferase 1 [Danio rerio]
          Length = 381

 Score = 75.2 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  +   Y+ NFP T +    I  + 
Sbjct: 7  LRVFELYSGIGGMHYALKESLVPA--EVVAAVDVNTTANLIYKHNFPTTQLLPKTIEGMT 64

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           QD    + D++L   PCQPF++ G
Sbjct: 65 LQDFDRLNFDMILMSPPCQPFTRIG 89


>gi|89941477|ref|NP_001018153.1| tRNA (cytosine-5-)-methyltransferase [Danio rerio]
 gi|62433271|dbj|BAD95483.1| DNA methyltransferase [Danio rerio]
          Length = 381

 Score = 75.2 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L++ +L+ GIGG+   L+++      E   + ++N  +   Y+ NFP T +    I  + 
Sbjct: 7  LRVFELYSGIGGMHYALKESLVPA--EVVAAVDVNTTANLIYKHNFPTTQLLPKTIEGMT 64

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           QD    + D++L   PCQPF++ G
Sbjct: 65 LQDFDRLNFDMILMSPPCQPFTRIG 89


>gi|228958671|ref|ZP_04120388.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228801009|gb|EEM47909.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 251

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +       ++     EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWA----GIDTAAFCEIEEFNQKVLRKNYPNIPIFPDLYKLTK 56

Query: 62 QDIPD--HD-----VLLAGFPCQPFSQAG 83
          Q + D   D     V+ AG+PCQ  S AG
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESMAG 85


>gi|220926735|ref|YP_002502037.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS 2060]
 gi|219951342|gb|ACL61734.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS 2060]
          Length = 454

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFG-DIAKI 59
             +   F G GG                 F+SE    + +TY+AN  P+T++ G DI ++
Sbjct: 90  FNVISTFAGGGGSSTGYRMA----GYRILFASEFVEAARETYRANASPSTILDGRDIRQL 145

Query: 60  KTQDI--------PDHDVLLAGFPCQPFSQAG 83
             +D+         + D+L    PC  FS AG
Sbjct: 146 TAEDLLFATGLKPGELDILDGSPPCASFSTAG 177


>gi|157412795|ref|YP_001483661.1| site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
 gi|157387370|gb|ABV50075.1| Site-specific DNA methylase [Prochlorococcus marinus str. MIT 9215]
          Length = 698

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------IAK 58
            DLF G GG+ L L +     N +   + +I   S+ T++ +F       D      I +
Sbjct: 55  VDLFSGAGGLSLGLHRA----NFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 59  IKTQ--DIPDHDVLLAGFPCQPFSQ 81
           I  Q     +  ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|123967970|ref|YP_001008828.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str.
           AS9601]
 gi|123198080|gb|ABM69721.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 698

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------IAK 58
            DLF G GG+ L L +     N +   + +I   S+ T++ +F       D      I +
Sbjct: 55  VDLFSGAGGLSLGLHRA----NFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 59  IKTQ--DIPDHDVLLAGFPCQPFSQ 81
           I  Q     +  ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|91069833|gb|ABE10765.1| C-5 cytosine-specific DNA methylase [uncultured Prochlorococcus
           marinus clone ASNC1092]
          Length = 686

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------IAK 58
            DLF G GG+ L L +     N +   + +I   S+ T++ +F       D      I +
Sbjct: 55  VDLFSGAGGLSLGLHRA----NFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 59  IKTQ--DIPDHDVLLAGFPCQPFSQ 81
           I  Q     +  ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|78778763|ref|YP_396875.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9312]
 gi|78712262|gb|ABB49439.1| DNA-cytosine methyltransferase [Prochlorococcus marinus str. MIT
           9312]
          Length = 686

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------IAK 58
            DLF G GG+ L L +     N +   + +I   S+ T++ +F       D      I +
Sbjct: 55  VDLFSGAGGLSLGLHRA----NFDVILACDIRNDSIMTHRHHFGGCSYECDLSKRKVINE 110

Query: 59  IKTQ--DIPDHDVLLAGFPCQPFSQ 81
           I  Q     +  ++  G PCQPFS+
Sbjct: 111 ISEQLNKCGEISLIAGGPPCQPFSR 135


>gi|330997449|ref|ZP_08321300.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
 gi|329570823|gb|EGG52539.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila
          YIT 11841]
          Length = 357

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAK-- 58
            + DLFCG GG+    E+             +    ++ T+  N    +    D+++  
Sbjct: 6  YNVVDLFCGCGGLSKGFEEA----GYNILVGVDFEQSALNTFSYNHNGAVGLRLDLSEPE 61

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
               +   D    D+++ G PCQ FS  G
Sbjct: 62 SFDAIVDAVDGRLVDIIIGGPPCQGFSLTG 91


>gi|317051620|ref|YP_004112736.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
 gi|316946704|gb|ADU66180.1| DNA-cytosine methyltransferase [Desulfurispirillum indicum S5]
          Length = 306

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +   DLF G+GG             +   +++   P +VK +  N P+T     D+ +  
Sbjct: 1  MNAIDLFAGLGGWSTGARMA----GIHILWAANHWPEAVKWHAKNHPDTAHACQDLHQAN 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HD+LLA   CQ  S+A
Sbjct: 57 WEQVPSHDILLASPCCQGHSRA 78


>gi|296206220|ref|XP_002750112.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 1
          [Callithrix jacchus]
          Length = 391

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           Q+      D++L   PCQPF++ G
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTRIG 86


>gi|324993630|gb|EGC25549.1| modification methylase HgiDII [Streptococcus sanguinis SK405]
 gi|324995058|gb|EGC26971.1| modification methylase HgiDII [Streptococcus sanguinis SK678]
 gi|327462899|gb|EGF09220.1| modification methylase HgiDII [Streptococcus sanguinis SK1]
          Length = 352

 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +KI   DLFCG+GG+   ++Q      +      +I+  S   Y+ N     I  DI +I
Sbjct: 1  MKINAIDLFCGVGGLTYGVQQA----GINVVAGYDIDDKSKFAYEYNNDAKFILKDIKEI 56

Query: 60 KTQDI-----PDHD--VLLAGFPCQPFS 80
          +  +I      D D  +L+   PCQPFS
Sbjct: 57 EDDEILALYPKDTDIKILIGCAPCQPFS 84


>gi|261838928|gb|ACX98693.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 52]
          Length = 355

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSTGLECLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|311221492|gb|ADP76553.1| DNA methyltransferase [Helicobacter pylori]
          Length = 587

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|226349837|ref|YP_002776950.1| modification methylase [Rhodococcus opacus B4]
 gi|226245752|dbj|BAH47019.1| modification methylase [Rhodococcus opacus B4]
          Length = 428

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK---I 59
          + ++  G GG  L LE+           + E++  +  T + N P+  +  GD+A     
Sbjct: 16 VVEICAGAGGQALGLEKA----GFSHKLAVELDTNACATLKLNRPDWDVEEGDVADPTVW 71

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  +    D+L  G PC PFS AG
Sbjct: 72 KPSEHEGVDLLAGGVPCPPFSIAG 95


>gi|332217175|ref|XP_003257732.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Nomascus
          leucogenys]
          Length = 393

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKT 61
          ++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I  
Sbjct: 5  RVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 62

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
          ++      D++L   PCQPF++ G
Sbjct: 63 EEFDRLSCDMILMSPPCQPFTRIG 86


>gi|315638243|ref|ZP_07893425.1| site-specific DNA-methyltransferase [Campylobacter upsaliensis
          JV21]
 gi|315481779|gb|EFU72401.1| site-specific DNA-methyltransferase [Campylobacter upsaliensis
          JV21]
          Length = 418

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----DI 56
            I + F G GG  L   Q          ++++ +  ++KT + N    L        DI
Sbjct: 3  YNIVEFFVGAGGSHLGFMQ----EGFSTLYANDFDSNALKTLEHNNKKHLQNAILDSTDI 58

Query: 57 AKIKTQDIPD-----HDVLLAGFPCQPFSQAG 83
           ++  +++        DV+  G  C+ FS AG
Sbjct: 59 TQLNPKELKKKVDSSVDVMFGGIVCKGFSLAG 90


>gi|240146838|ref|ZP_04745439.1| putative cytosine-specific methyltransferase protein [Roseburia
          intestinalis L1-82]
 gi|257201024|gb|EEU99308.1| putative cytosine-specific methyltransferase protein [Roseburia
          intestinalis L1-82]
 gi|291534422|emb|CBL07534.1| DNA-methyltransferase (dcm) [Roseburia intestinalis M50/1]
 gi|291541262|emb|CBL14373.1| DNA-methyltransferase (dcm) [Roseburia intestinalis XB6B4]
          Length = 411

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
              D+F G GG+ L L         +  F+ E +  + +T + N  +T           
Sbjct: 4  FSYIDIFAGCGGLSLGLHNA----GWKGLFAIEKSKDAFETLKYNLIDTTQHFGWNEWLP 59

Query: 54 ---GDIAKIKTQ---DIPD----HDVLLAGFPCQPFSQAG 83
              DI ++ ++   ++        +++ G PCQ FS AG
Sbjct: 60 QTEHDINEVISKYRSELEKLAGTVTLVVGGPPCQGFSMAG 99


>gi|270012712|gb|EFA09160.1| DNA methyltransferase 2 [Tribolium castaneum]
          Length = 329

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          ++I +L+ GIGG+   L+ +     ++   + +INP +   Y+ NFP+  L+  ++  + 
Sbjct: 1  MEILELYSGIGGMHWALKVSGVEGTIK--AAVDINPTANSVYKHNFPHINLLNRNVQSLT 58

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           Q I     + +L   PCQPF++ G
Sbjct: 59 PQFINKLGVNTILMSPPCQPFTRNG 83


>gi|155122046|gb|ABT13914.1| hypothetical protein MT325_m360R [Paramecium bursaria chlorella
          virus MT325]
          Length = 342

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML   DLF GIGGI   L        VE     E N  +        PN  +F D+    
Sbjct: 1  MLHAIDLFSGIGGITHGLRGI-----VEPIAYVEKNDDARGFLARKHPNVPVFDDVCTFD 55

Query: 61 TQD-IPDHDVLLAGFPCQPFSQAG 83
              +   D++  G+PC  FS AG
Sbjct: 56 ATPYLGKVDIITGGWPCTGFSTAG 79


>gi|61554791|gb|AAX46615.1| DNA methyltransferase 2 isoform a [Bos taurus]
          Length = 377

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRALELYSGIGGMHQALRESCIPA--QVVAAVDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D     ++L   PCQPF++ G
Sbjct: 60 ITLEEFDRLSFNMILMSPPCQPFTRIG 86


>gi|32441269|ref|NP_861528.1| tRNA (cytosine-5-)-methyltransferase [Bos taurus]
 gi|75046080|sp|Q7YS61|TRDMT_BOVIN RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2
 gi|31074159|gb|AAP20550.1| DNA cytosine-5 methyltransferase 2 [Bos taurus]
 gi|296481442|gb|DAA23557.1| tRNA (cytosine-5-)-methyltransferase [Bos taurus]
          Length = 391

 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRALELYSGIGGMHQALRESCIPA--QVVAAVDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D     ++L   PCQPF++ G
Sbjct: 60 ITLEEFDRLSFNMILMSPPCQPFTRIG 86


>gi|330958885|gb|EGH59145.1| cytosine-specific DNA methyltransferase [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 458

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          LK   +  GI          ++   +E  + +EI P+       ++P T   GD+ K   
Sbjct: 10 LKYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIEAPDVLVGGTPCQAFSVAG 91


>gi|301311774|ref|ZP_07217699.1| modification methylase BepI [Bacteroides sp. 20_3]
 gi|300830334|gb|EFK60979.1| modification methylase BepI [Bacteroides sp. 20_3]
          Length = 425

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           L++  LF G GG+ L  E  F                                 F+++I 
Sbjct: 14  LRVLSLFSGCGGMDLGFEGDFICHRKSISPQNTWVQEVIDEHWVRLQKNRFRTVFANDIL 73

Query: 37  PYSVKT---------YQANFPNTLIFGDIAKIK---TQDIPD-HDVLLAGFPCQPFSQAG 83
             +            Y  N  NT    D+ K      +  P   DV+  GFPCQ FS +G
Sbjct: 74  KEAQTAWLQYMDRFGYDKNVYNTKSIVDLVKEHRAGKKVFPKNIDVVTGGFPCQDFSVSG 133


>gi|297618103|ref|YP_003703262.1| DNA-cytosine methyltransferase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145940|gb|ADI02697.1| DNA-cytosine methyltransferase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 388

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 25/100 (25%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------------PNTL 51
             +F G GG  L +E        E    ++I+ +S +T ++N                 +
Sbjct: 8   ISIFSGAGGFDLGIEAA----GFETRLCTDIDYHSCRTLRSNRRLGKETGKHSFLQNAVV 63

Query: 52  IFGDIAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
           +  DI K+ T+DI            +++ G PCQ FS  G
Sbjct: 64  LQRDIRKLNTKDILRAARLDRGKVSLVIGGPPCQSFSVFG 103


>gi|255013132|ref|ZP_05285258.1| site-specific DNA methylase [Bacteroides sp. 2_1_7]
          Length = 423

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           L++  LF G GG+ L  E  F                                 F+++I 
Sbjct: 12  LRVLSLFSGCGGMDLGFEGDFICHRKSISPQSTWVQEVIDEHWVRLQKNRFRTVFANDIL 71

Query: 37  PYSVKT---------YQANFPNTLIFGDIAKIK---TQDIPD-HDVLLAGFPCQPFSQAG 83
             +            Y  N  NT    D+ K      +  P   DV+  GFPCQ FS +G
Sbjct: 72  KEAQTAWLQYMDRFGYDKNVYNTKSIVDLVKEHRAGKKVFPKNIDVVTGGFPCQDFSVSG 131


>gi|150009588|ref|YP_001304331.1| site-specific DNA methylase [Parabacteroides distasonis ATCC 8503]
 gi|256838307|ref|ZP_05543817.1| site-specific DNA methylase [Parabacteroides sp. D13]
 gi|149938012|gb|ABR44709.1| site-specific DNA methylase [Parabacteroides distasonis ATCC 8503]
 gi|256739226|gb|EEU52550.1| site-specific DNA methylase [Parabacteroides sp. D13]
          Length = 425

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           L++  LF G GG+ L  E  F                                 F+++I 
Sbjct: 14  LRVLSLFSGCGGMDLGFEGDFICHRKSISPQSTWVQEVIDEHWVRLQKNRFRTVFANDIL 73

Query: 37  PYSVKT---------YQANFPNTLIFGDIAKIK---TQDIPD-HDVLLAGFPCQPFSQAG 83
             +            Y  N  NT    D+ K      +  P   DV+  GFPCQ FS +G
Sbjct: 74  KEAQTAWLQYMDRFGYDKNVYNTKSIVDLVKEHRAGKKVFPKNIDVVTGGFPCQDFSVSG 133


>gi|296503162|ref|YP_003664862.1| type II restriction-modification system methylation subunit
          [Bacillus thuringiensis BMB171]
 gi|296324214|gb|ADH07142.1| Type II restriction-modification system methylation subunit
          [Bacillus thuringiensis BMB171]
          Length = 251

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +       +      EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWA----GINTAAFCEIEEFNQKVLRKNYPNIPIFPDLYKLTK 56

Query: 62 QDIPD--HD-----VLLAGFPCQPFSQAG 83
          Q + D   D     V+ AG+PCQ  S AG
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESMAG 85


>gi|15644682|ref|NP_206852.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 26695]
 gi|2313124|gb|AAD07117.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori 26695]
          Length = 355

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIKLAKKLEINMIIGGPPCQGFSNKG 89


>gi|281420730|ref|ZP_06251729.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
 gi|281405022|gb|EFB35702.1| DNA (cytosine-5-)-methyltransferase [Prevotella copri DSM 18205]
          Length = 432

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIK 60
           +I  LF GIG I    ++     N +  F+ +I P    +Y AN+       F DI +  
Sbjct: 58  RIGTLFSGIGAIEHAFQRLG--LNHKIVFAGDIEPKCKISYFANYKINEEDWFTDIREFD 115

Query: 61  TQDIP-DHDVLLAGFPCQPFSQAG 83
                   D ++ G PCQ FS  G
Sbjct: 116 ATKYKGKVDFIVGGAPCQAFSMVG 139


>gi|302551692|ref|ZP_07304034.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
          40736]
 gi|302469310|gb|EFL32403.1| modification methylase NaeI [Streptomyces viridochromogenes DSM
          40736]
          Length = 415

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          +   ++  G GG  L LE        +   + E++  +V T +AN    ++ GD+A    
Sbjct: 1  MSAVEICAGAGGQSLGLELA----GFDHAVAVELDENAVNTLRANRDWRVVHGDVADEDL 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
           K     D D+L  G PC PFS AG
Sbjct: 57 WKPGKYIDIDLLAGGVPCPPFSIAG 81


>gi|269219712|ref|ZP_06163566.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon
          848 str. F0332]
 gi|269210954|gb|EEZ77294.1| DNA (cytosine-5-)-methyltransferase [Actinomyces sp. oral taxon
          848 str. F0332]
          Length = 310

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKI 59
          + + F GIG  R+ LE           ++++ +P     Y+A F +        GDI KI
Sbjct: 14 VLEFFAGIGLARIGLEAA----GFRVTWANDFDPDKKAMYEAQFEDAGDHVFALGDIGKI 69

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
             ++P D  +  A  PC   S AG
Sbjct: 70 TADELPRDAALAWASSPCTDLSLAG 94


>gi|167997277|ref|XP_001751345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697326|gb|EDQ83662.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 812

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           +  LF G+GGI   L       +    +SSE+   +++  ++  P+    GD+ K+    
Sbjct: 148 VLSLFDGLGGIWQALTNLGIPFSG---YSSEVLAPAIQVVKSRHPHVKHVGDVRKLNLSA 204

Query: 64  IPD-HDVLLAGFPCQPFSQAG 83
           IP+  D+++ GFPCQ  S  G
Sbjct: 205 IPEKVDLVVGGFPCQDLSIMG 225


>gi|325962428|ref|YP_004240334.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468515|gb|ADX72200.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
          Length = 454

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 37/113 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
           +K  DLF G GG+ L +E+       +   + E +  + +T+  N        DI +   
Sbjct: 1   MKYVDLFSGCGGLSLGIERA----GGQLVLAVEKSDMAARTFHHNLLGDA--SDIRQWER 54

Query: 59  --------------------------IKTQDIP--DHDVLLAGFPCQPFSQAG 83
                                     +  +D+     D+++ G PCQ FS AG
Sbjct: 55  YVASSEDNQIASRLLVRELSVLLANTVAMEDLRANGLDLVVGGPPCQGFSLAG 107


>gi|210134246|ref|YP_002300685.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
 gi|210132214|gb|ACJ07205.1| cytosine specific DNA methyltransferase [Helicobacter pylori P12]
          Length = 355

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLEEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 58 K--IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          +  IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QAAIKEKVIKLAQKLEINMIIGGPPCQGFSNKG 89


>gi|188526860|ref|YP_001909547.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori Shi470]
 gi|188143100|gb|ACD47517.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori Shi470]
          Length = 355

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + I GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNAMGICGDIT 56

Query: 58 --KIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QAEIKEKVIKLAQTLEINMIIGGPPCQGFSNKG 89


>gi|91089179|ref|XP_974235.1| PREDICTED: similar to DNA cytosine-5 methyltransferase [Tribolium
           castaneum]
          Length = 579

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           ++I +L+ GIGG+   L+ +     ++   + +INP +   Y+ NFP+  L+  ++  + 
Sbjct: 251 MEILELYSGIGGMHWALKVSGVEGTIK--AAVDINPTANSVYKHNFPHINLLNRNVQSLT 308

Query: 61  TQDIPD--HDVLLAGFPCQPFSQAG 83
            Q I     + +L   PCQPF++ G
Sbjct: 309 PQFINKLGVNTILMSPPCQPFTRNG 333


>gi|220926789|ref|YP_002502091.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
 gi|219951396|gb|ACL61788.1| DNA-cytosine methyltransferase [Methylobacterium nodulans ORS
          2060]
          Length = 358

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + DLFCG GG+ L          ++   S + +P    +Y  N P + LI  D+A +  +
Sbjct: 2  LIDLFCGCGGLSLGARSA----GLKVTLSVDNDPILTSSYTFNHPQSRLILADVADLSGR 57

Query: 63 DIPDH-----DVLLAGFPCQPFSQAG 83
           +        D ++ G PCQ FS+ G
Sbjct: 58 YLRRAAGGYIDGIVGGPPCQGFSEIG 83


>gi|168485680|ref|ZP_02710188.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
          HaeIII) (M.HaeIII) [Streptococcus pneumoniae
          CDC1087-00]
 gi|183571278|gb|EDT91806.1| modification methylase HaeIII (Cytosine-specificmethyltransferase
          HaeIII) (M.HaeIII) [Streptococcus pneumoniae
          CDC1087-00]
          Length = 363

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           DLF G GG    L+++     ++   + EI+  +VKTY+ N P   +I  DI  +   +
Sbjct: 7  IDLFSGAGGTTSGLKKS----GIDVQVAVEIDSVAVKTYKLNNPEVSVIDKDINVVSGDE 62

Query: 64 IP-----DHD---VLLAGFPCQPFSQAG 83
          +      D D   +L+A  PCQ FS  G
Sbjct: 63 VKEYLKIDTDDKLMLVACPPCQGFSTIG 90


>gi|168210881|ref|ZP_02636506.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|209947599|ref|YP_002291106.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
 gi|170711042|gb|EDT23224.1| Dcm [Clostridium perfringens B str. ATCC 3626]
 gi|209910390|dbj|BAG75479.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
          Length = 339

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTQFKDIDLVTYGFPCVDISLAG 82


>gi|162461489|ref|NP_001105173.1| DNA methyl transferase4 [Zea mays]
 gi|13936240|gb|AAK40306.1| DNA methyltransferase ZMET4 [Zea mays]
 gi|194697288|gb|ACF82728.1| unknown [Zea mays]
          Length = 357

 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L  +      E   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 8  RVLEFYSGIGGLRYSLMASGVRA--EVVEAFDINDVANDVYEHNFGHRPCQGNIQTLTAS 65

Query: 63 DIP--DHDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 66 DLDKYKAHAWLLSPPCQPYTRQG 88


>gi|157953548|ref|YP_001498439.1| hypothetical protein AR158_C358L [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068196|gb|ABU43903.1| hypothetical protein AR158_C358L [Paramecium bursaria Chlorella
          virus AR158]
          Length = 370

 Score = 74.4 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ML   +LF GIGGI   L      R   +     E N  +    + +     IF D+   
Sbjct: 1  MLDTLELFAGIGGITYGL------RGFAKPAAFVEWNEEAKNVLKRH--KVPIFDDVTTF 52

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQAG 83
                D  D++ AG+PC  FS AG
Sbjct: 53 DATPFKDKVDMVSAGWPCTGFSTAG 77


>gi|239622757|ref|ZP_04665788.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|239514754|gb|EEQ54621.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 390

 Score = 74.4 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKI 59
           + F GIG  RL LE+          +S++I+    + Y+  F N     TLI GD+ ++
Sbjct: 19 LEFFAGIGLARLGLEEA----GFHVAWSNDIDHAKCQMYRNQFGNNEQEHTLIEGDMGEL 74

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
             D+P D  +     PC   S AG
Sbjct: 75 HGSDLPHDISIAWGSSPCTDISLAG 99


>gi|213968059|ref|ZP_03396204.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|213927039|gb|EEB60589.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 584

 Score = 74.4 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          LK   +  GI          ++   +E  + +EI+P+       ++P T   GD+ K   
Sbjct: 10 LKYGSVCSGI----EAATAAWHPLGMEPVWFAEIDPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIDAPDVLVGGTPCQAFSVAG 91


>gi|218782541|ref|YP_002433859.1| DNA-cytosine methyltransferase [Desulfatibacillum alkenivorans
          AK-01]
 gi|218763925|gb|ACL06391.1| DNA-cytosine methyltransferase [Desulfatibacillum alkenivorans
          AK-01]
          Length = 381

 Score = 74.4 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           +  + F G G   L L         +C + +E      ++Y+ N        D+  +  
Sbjct: 5  FRFYEFFAGGGMASLGL-----GPQWKCVYVNEWCKKKARSYKINHSGAPRV-DVRDVAV 58

Query: 60 -KTQDIPD-HDVLLAGFPCQPFSQAG 83
              D+ +  D+  A FPCQ  S AG
Sbjct: 59 ATPADLRENADLAWASFPCQDLSLAG 84


>gi|168206039|ref|ZP_02632044.1| Dcm [Clostridium perfringens E str. JGS1987]
 gi|170662518|gb|EDT15201.1| Dcm [Clostridium perfringens E str. JGS1987]
          Length = 339

 Score = 74.4 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLSLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 CVDGTHFKDIDLVTYGFPCTDISLAG 82


>gi|326789360|ref|YP_004307181.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326540124|gb|ADZ81983.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 446

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 15/91 (16%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNT--LIFGDIA 57
          + D+F G GG+ L  ++       +     E+ P +VKT   N    F      I GDI 
Sbjct: 6  VIDIFSGCGGLALGFQKA----GFKITHGIELMPEAVKTVSYNIDWRFGEETSHICGDIT 61

Query: 58 KIKTQDIPDH---D--VLLAGFPCQPFSQAG 83
          ++ T    +    D  +++ G PCQ +S AG
Sbjct: 62 QMDTSIFKERIGKDGCIVIGGPPCQAYSLAG 92


>gi|281420197|ref|ZP_06251196.1| modification methylase HgiDII [Prevotella copri DSM 18205]
 gi|281405692|gb|EFB36372.1| modification methylase HgiDII [Prevotella copri DSM 18205]
          Length = 353

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNT-LIFGDIA 57
           K  D FCG GG+ L L Q       +  +S +I   ++ T +AN   F N      DI 
Sbjct: 5  YKCIDCFCGAGGLCLGLIQA----GFDILYSFDIEAKAIATIKANPEYFKNHKAETRDIY 60

Query: 58 KIKTQDI--------PDHDVLLAGFPCQPFSQ 81
           ++T ++         + D+L  G PCQ FS 
Sbjct: 61 DVETAELLKSLNLKSGELDLLAGGPPCQGFSV 92


>gi|18700048|gb|AAL03949.1| DNA methyltransferase Bse634IM [Geobacillus stearothermophilus]
          Length = 387

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY------QANFP-NTLIF 53
          M+K+  LF G G + L   +       +  + +EI P   + +      + N   + +  
Sbjct: 1  MIKVASLFSGAGFLDLGFAE----NGFDIVWGAEIVPEFSRAHNYNMRLRYNHDVDRIHT 56

Query: 54 GDIAKIKTQDIP-DHDVLLAGFPCQPFSQ 81
           DI  +   D+P +   ++ G PCQ FS 
Sbjct: 57 VDIVNVSPMDMPQNIRGIIGGPPCQDFSI 85


>gi|298373979|ref|ZP_06983937.1| modification methylase BepI [Bacteroides sp. 3_1_19]
 gi|298268347|gb|EFI10002.1| modification methylase BepI [Bacteroides sp. 3_1_19]
          Length = 425

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           L++  LF G GG+ L  E  F                                 F+++I 
Sbjct: 14  LRVLSLFSGCGGMDLGFEGDFICHRKSISPQSSWIQEVIDEHWVRLQRNRFRTVFANDIL 73

Query: 37  PYSVKT---------YQANFPNTLIFGDIAKIK---TQDIPD-HDVLLAGFPCQPFSQAG 83
             +            Y  N  NT    D+ K      +  P   DV+  GFPCQ FS +G
Sbjct: 74  KEAQTAWLQYMDRFGYDKNVYNTKSIVDLVKEHRAGKKVFPKNIDVVTGGFPCQDFSVSG 133


>gi|262383127|ref|ZP_06076264.1| site-specific DNA methylase [Bacteroides sp. 2_1_33B]
 gi|262296005|gb|EEY83936.1| site-specific DNA methylase [Bacteroides sp. 2_1_33B]
          Length = 423

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           L++  LF G GG+ L  E  F                                 F+++I 
Sbjct: 12  LRVLSLFSGCGGMDLGFEGDFICHRKSISPQSSWVQEVINEHWVRLQRNRFRTVFANDIL 71

Query: 37  PYSVKT---------YQANFPNTLIFGDIAKIK---TQDIPD-HDVLLAGFPCQPFSQAG 83
             +            Y  N  NT    D+ K      +  P   DV+  GFPCQ FS +G
Sbjct: 72  KEAQTAWLQYMDRFGYDKNVYNTKSIVDLVKEHRAGKKVFPKNIDVVTGGFPCQDFSVSG 131


>gi|258511120|ref|YP_003184554.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
 gi|257477846|gb|ACV58165.1| DNA-cytosine methyltransferase [Alicyclobacillus acidocaldarius
          subsp. acidocaldarius DSM 446]
          Length = 395

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTL 51
          ++  +LF G GG+ + +               E + Y+  T + N          +P  +
Sbjct: 1  MRSVELFVGAGGLAMGISNA----GFRHVGLYEWDRYACDTIRFNKERNVGPVRDWP--I 54

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             D+  +        ++L  G PCQPFS  G
Sbjct: 55 YQLDVRSVDFTQYRGIELLAGGPPCQPFSLGG 86


>gi|317488614|ref|ZP_07947157.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|316912266|gb|EFV33832.1| C-5 cytosine-specific DNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 308

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ-- 62
           DLFCG GG+             E     +    ++ TY AN P+     D+  +     
Sbjct: 10 IDLFCGCGGLTAGFRAA----GFENLVGFDNWQAALDTYSANNPDQGEMLDLGDLSASLE 65

Query: 63 ---DIPDHDVLLAGFPCQPFSQAG 83
             +    D ++ G PCQ FS AG
Sbjct: 66 RLAEYKGIDGVIGGPPCQDFSSAG 89


>gi|91203606|emb|CAJ71259.1| similar to HhaI Dna (cytosine-C5-)-methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 416

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----ANFPNTLIFGDIA 57
           ++  DLF G GG     ++       E     E++P +  T +     ++       DI 
Sbjct: 1   MRYIDLFAGAGGFSEGFKRA----GFEPVAFVEVDPAACFTLKTRHSYHYLKENNKSDIY 56

Query: 58  ------KIKTQDI-----------------------------------PDHDVLLAGFPC 76
                 +I  + +                                    D DV++ G PC
Sbjct: 57  IKYLKGEINREQLYSIVPSHILESVINLSISDENNSKIFQIVEKLIGRKDIDVIVGGPPC 116

Query: 77  QPFSQAG 83
           Q +S  G
Sbjct: 117 QAYSLVG 123


>gi|57867437|ref|YP_189088.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis RP62A]
 gi|57638095|gb|AAW54883.1| DNA-cytosine methyltransferase [Staphylococcus epidermidis RP62A]
          Length = 335

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QANFPNTLIFGDIAK 58
          ++K+ +LF G+G   + L         E    SE    + + +    N   +   GD+  
Sbjct: 4  LIKVLELFSGVGSFSISLNTLGIEH--EIVGFSETRKTATQLFCKLHNKKESENLGDVRN 61

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  +D+ D D+L+ G PCQ F++AG
Sbjct: 62 VSAKDL-DVDLLVFGSPCQSFTRAG 85


>gi|157952715|ref|YP_001497607.1| hypothetical protein NY2A_B411L [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155122942|gb|ABT14810.1| hypothetical protein NY2A_B411L [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 370

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNV-ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          ML   +LF GIGGI   L      R   +     E N  +    + +     IF D+   
Sbjct: 1  MLDTLELFAGIGGITYGL------RGFAKPAAFVEWNEEAKNVLKRH--KVPIFDDVTTF 52

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQAG 83
                D  D++ AG+PC  FS AG
Sbjct: 53 DATPFKDKVDMVSAGWPCTGFSTAG 77


>gi|251788110|ref|YP_003002831.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
 gi|247536731|gb|ACT05352.1| DNA-cytosine methyltransferase [Dickeya zeae Ech1591]
          Length = 490

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML+   +  GI      +   +    ++  + SE++P+        +P+    GDI +I 
Sbjct: 9  MLQYGSVCSGI----EAVSLAWEPLGLQAAWFSEVDPFPNAVLAHRYPHIPNLGDITRIA 64

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    ++   D+L+ G PCQ FS AG
Sbjct: 65 DRVQNGEVTAPDILVGGTPCQAFSIAG 91


>gi|73948984|ref|XP_856563.1| PREDICTED: similar to DNA methyltransferase 2 isoform c isoform 3
          [Canis familiaris]
          Length = 345

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQ 81
            + + D     ++L   PCQPF++
Sbjct: 60 ITLEEFDKLSFNMILMSPPCQPFTR 84


>gi|57040472|ref|XP_544244.1| PREDICTED: similar to DNA methyltransferase 2 isoform b isoform 1
          [Canis familiaris]
          Length = 367

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHQALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQ 81
            + + D     ++L   PCQPF++
Sbjct: 60 ITLEEFDKLSFNMILMSPPCQPFTR 84


>gi|119386086|ref|YP_917141.1| C-5 cytosine-specific DNA methylase [Paracoccus denitrificans
          PD1222]
 gi|119376681|gb|ABL71445.1| C-5 cytosine-specific DNA methylase [Paracoccus denitrificans
          PD1222]
          Length = 502

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGI-GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          + DLF G  GG  L L +           + EI  +    Y  NFP+  ++ DI  +   
Sbjct: 14 VLDLFSGAAGGWSLGLHRA----GFMTIAACEIVEWRRILYSENFPHVRLYADIRDLTAT 69

Query: 63 DIPD-----HDVLLAGFPCQPFSQA 82
           +        D+++   PCQ  S A
Sbjct: 70 RLVSDLGCLPDIVVGSPPCQDISSA 94


>gi|229066883|ref|ZP_04201078.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus cereus AH603]
 gi|228715383|gb|EEL67217.1| Prophage LambdaBa01, C-5 cytosine-specific DNA methylase
          [Bacillus cereus AH603]
          Length = 251

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +  +       +E     EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISMAADWA----GIETAAFCEIEEFNQKVLRKNYPNIPIFPDLYKLAK 56

Query: 62 QDIPD--HD-----VLLAGFPCQPFSQAG 83
          Q + D   D     V+ AG+PCQ  S  G
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESLVG 85


>gi|332023953|gb|EGI64171.1| DNA (cytosine-5)-methyltransferase PliMCI [Acromyrmex echinatior]
          Length = 1449

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L++ D+F G GG+   + Q       E  ++ E    +   Y+ N P T++F        
Sbjct: 942  LRMLDIFAGCGGLSEGMHQAGVA---ESLWAIEKESSAANAYRLNNPKTMVFSEDCNKLL 998

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD      Q +P   D ++L  G PCQ FS
Sbjct: 999  QRVMDGDRVDNNGQKLPQKGDVELLCGGPPCQGFS 1033


>gi|260806879|ref|XP_002598311.1| hypothetical protein BRAFLDRAFT_204680 [Branchiostoma floridae]
 gi|229283583|gb|EEN54323.1| hypothetical protein BRAFLDRAFT_204680 [Branchiostoma floridae]
          Length = 1275

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           L++ D+F G GG+     Q     +    ++ E+   + + Y+ N P+  +F D   I  
Sbjct: 799 LRMLDVFAGCGGLSEGFHQAGIADS---KWAVEVMEPAAQAYRLNNPDCTVFTDDCNILL 855

Query: 60  -----------KTQDIP---DHDVLLAGFPCQPFS 80
                        Q +P   D ++L  G PCQ FS
Sbjct: 856 KLVMEGATTNSTGQRLPQKGDVELLCGGPPCQGFS 890


>gi|110799020|ref|YP_694603.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
 gi|110673667|gb|ABG82654.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC
          13124]
          Length = 361

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 1  MLKI-TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          M KI    F G GG+ + + +       +   S E+      T + N P   ++ GDI  
Sbjct: 1  MSKIAISFFAGAGGLDIGIHEA----GFDVKLSVELEEKYCVTLKQNNPTFNVVNGDIMD 56

Query: 59 IKTQDI---------PDHDVLLAGFPCQPFSQAG 83
             + I          + D++  G PCQ FS AG
Sbjct: 57 YSKEKIYSDAGLNYNDEIDLIFGGSPCQSFSTAG 90


>gi|38640332|ref|NP_944253.1| Bcep22gp25 [Burkholderia phage Bcep22]
 gi|33860399|gb|AAQ54959.1| Bcep22gp25 [Burkholderia phage Bcep22]
          Length = 205

 Score = 74.4 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++   +  GI          ++    +  + +EI  +       ++P+    GD+ KI  
Sbjct: 1  MRYGSVCSGI----EAATVAWHPLGWKPAWFAEIEKFPSAVLAHHYPDVPNLGDMTKITR 56

Query: 61 ---TQDIPDHDVLLAGFPCQPFSQAG 83
              +++   DVL+ G PCQ FS AG
Sbjct: 57 AVLAREVEVPDVLVGGTPCQAFSLAG 82


>gi|72255517|ref|NP_001026813.1| tRNA (cytosine-5-)-methyltransferase [Rattus norvegicus]
 gi|115311703|sp|Q4G073|TRDMT_RAT RecName: Full=tRNA (cytosine-5-)-methyltransferase; AltName:
          Full=DNA (cytosine-5)-methyltransferase-like protein 2;
          Short=Dnmt2
 gi|71051331|gb|AAH98700.1| TRNA aspartic acid methyltransferase 1 [Rattus norvegicus]
 gi|149021112|gb|EDL78719.1| DNA methyltransferase 2 [Rattus norvegicus]
          Length = 391

 Score = 74.0 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L ++          + +++  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALRES--RVPAHVVAAIDVSTVANEVYKHNFPHTHLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D     ++L   PCQPF++ G
Sbjct: 60 ISLEEFDKLSFNMILMSPPCQPFTRIG 86


>gi|296170222|ref|ZP_06851815.1| DNA (cytosine-5-)-methyltransferase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295895098|gb|EFG74816.1| DNA (cytosine-5-)-methyltransferase [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 388

 Score = 74.0 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIAK 58
          K  + F GIG  R+ LE+       +  ++++  P     Y   F     +T   GDI K
Sbjct: 13 KAIEFFAGIGLARMGLEKA----GFQVTWANDYEPDKRAMYVGQFGESEGHTFALGDIGK 68

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +K  D+P D  +  A  PC   S AG
Sbjct: 69 VKAADLPTDAALAWASSPCTDLSLAG 94


>gi|295114912|emb|CBL35759.1| Site-specific DNA methylase [butyrate-producing bacterium SM4/1]
          Length = 217

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFG----- 54
           +++ DLFCG GG+ L + +     +        ++++P +++ Y+ NF    +       
Sbjct: 65  IRVVDLFCGCGGMSLGIAEACRALDYRFVPVLGADMDPVALQVYKENFKPHHVISEPIEN 124

Query: 55  --------DIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                   +I++ +   I    + D+L+ G PCQ  S
Sbjct: 125 QIDSEIGAEISEAEKSFINLVGEVDILIGGPPCQGNS 161


>gi|256390614|ref|YP_003112178.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
 gi|256356840|gb|ACU70337.1| DNA-cytosine methyltransferase [Catenulispora acidiphila DSM 44928]
          Length = 419

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAKIK 60
            +LF G GG+ L + +       +    +E  P + +T + N        LI GDIA   
Sbjct: 23  VELFSGGGGLALAMHRA----GFQHLMCNEFAPRACETLRMNSEALGRPQLIEGDIATAV 78

Query: 61  TQD-----IPDHDVLLAGFPCQPFSQAG 83
           T +         DV+  G PCQPFS  G
Sbjct: 79  TDERLAELTGKVDVVAGGPPCQPFSLGG 106


>gi|288576182|ref|ZP_05978340.2| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288566126|gb|EFC87686.1| DNA (cytosine-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 406

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
           +++  +F GIG     +EQ F   + N    F+ +I+P+  K+Y  N+         DI 
Sbjct: 33  IRLATVFSGIG----AVEQAFYRLNLNHTIVFAGDIDPHVKKSYLGNYQLDEGFWHDDIT 88

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 89  QFDARKFRNQVDILVGGSPCQAFSMVG 115


>gi|145610006|ref|XP_366719.2| hypothetical protein MGG_02795 [Magnaporthe oryzae 70-15]
 gi|145017391|gb|EDK01754.1| hypothetical protein MGG_02795 [Magnaporthe oryzae 70-15]
          Length = 892

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK-IKT 61
             D+FCG GG                 ++ E   ++  TY+ NFP   +F GDI   ++ 
Sbjct: 470 FGDMFCGAGGASQGARAAGFRLG----YAVEHWNHAAATYRHNFPEVNLFEGDIFDFLQR 525

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            D+   D+L    PCQ +S A
Sbjct: 526 NDLDFVDILHLSPPCQYWSPA 546


>gi|291402254|ref|XP_002717405.1| PREDICTED: tRNA aspartic acid methyltransferase 1 [Oryctolagus
          cuniculus]
          Length = 367

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 9/85 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ +L+ GIGG+   L+++      +   + ++N  + + Y+ NFP+TL+      I+ 
Sbjct: 4  LRVLELYSGIGGMHHALKESCVPA--QVVAAIDVNTVANEVYEYNFPHTLLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQ 81
            + + D     ++L   PCQPF++
Sbjct: 60 ITLEEFDKLSFNMILMSPPCQPFTR 84


>gi|224437470|ref|ZP_03658432.1| site-specific DNA-methyltransferase [Helicobacter cinaedi CCUG
          18818]
          Length = 418

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----DIA 57
           + + F G GG  L   Q          ++++ +  ++KT + N    L        DI 
Sbjct: 4  NVVEFFVGAGGSHLGFMQ----EGFSTLYANDFDSNALKTLEYNNKKHLQNAILDSTDIT 59

Query: 58 KIKTQDIPD-----HDVLLAGFPCQPFSQAG 83
          ++  +++        DV+  G  C+ FS AG
Sbjct: 60 QLNPKELKKKLDSSVDVMFGGIVCKGFSLAG 90


>gi|302531233|ref|ZP_07283575.1| DNA-cytosine methyltransferase [Streptomyces sp. AA4]
 gi|302440128|gb|EFL11944.1| DNA-cytosine methyltransferase [Streptomyces sp. AA4]
          Length = 371

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIK 60
           + F GIG +RL LE        +  +S++I P     Y+A+F +      + GD+A ++
Sbjct: 10 AEFFAGIGLVRLGLEPA----GFDVAWSNDIEPAKQAMYEAHFNDQGAHEYVLGDVAALR 65

Query: 61 TQDIP-DHDVLLAGFPCQPFSQAG 83
            D+P    +  A FPC   S AG
Sbjct: 66 GADLPAGLSLAWASFPCTDLSLAG 89


>gi|119385904|ref|YP_916959.1| C-5 cytosine-specific DNA methylase [Paracoccus denitrificans
          PD1222]
 gi|119376499|gb|ABL71263.1| C-5 cytosine-specific DNA methylase [Paracoccus denitrificans
          PD1222]
          Length = 495

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 2  LKITDLFCGI-GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          L++ DLF G  GG  L L +           + EI  +    Y  NFP+  +  D+  + 
Sbjct: 12 LRVLDLFSGAAGGWSLGLHRA----GFVTVAACEIVAWRRILYSENFPHVRLHEDVRTLT 67

Query: 61 TQ-------DIPDHDVLLAGFPCQPFSQA 82
                    +P+  +++   PCQ  S A
Sbjct: 68 AARLVSDLGGLPE--IIVGSPPCQDISSA 94


>gi|170754579|ref|YP_001781640.1| DNA-cytosine methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169119791|gb|ACA43627.1| DNA-cytosine methyltransferase [Clostridium botulinum B1 str. Okra]
          Length = 444

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 40/119 (33%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------- 51
           M    DLF G GG+    +        +   + E++  +VKTY  N    +         
Sbjct: 1   MYTYIDLFAGPGGLCTGFKNA----GFKPLIAVEMSDNTVKTYARNHDAEIYKLEELIYN 56

Query: 52  -----------------IFGDIAKIKTQDIPD----------HDVLLAGFPCQPFSQAG 83
                            I GDI  +    I +           DV+  G PC+ FS AG
Sbjct: 57  KGKLENILNIENNRTALIHGDIRLVDNDIIKEILHKKFKVDSVDVVAGGPPCESFSMAG 115


>gi|166366114|ref|YP_001658387.1| cytosine-specific modification DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166088487|dbj|BAG03195.1| cytosine-specific modification DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 431

 Score = 74.0 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 44/122 (36%)

Query: 3   KITDLFCGIGGIRLDLEQTFN--------------------------HRNVECFFSSEIN 36
           ++  LF G GG+ L LE  F                               E  F+++I 
Sbjct: 7   RVLSLFSGCGGMDLGLEGGFWVHQDCVNENIHRDWIVERREPWLKLPRTTFETVFANDIT 66

Query: 37  PYSVKTYQANFP--------NTLIFGDIAKIKTQ------DIP-DHDVLLAGFPCQPFSQ 81
             +   + A  P        N    G I  +  Q        P + DV+  GFPCQ FS 
Sbjct: 67  KAA---HNAWIPYFEKRGKKNVFHLGSIVDLVKQAEKGEFQFPSNIDVVTGGFPCQDFSV 123

Query: 82  AG 83
           +G
Sbjct: 124 SG 125


>gi|149210133|ref|XP_001522441.1| hypothetical protein MGCH7_ch7g548 [Magnaporthe oryzae 70-15]
 gi|86196503|gb|EAQ71141.1| hypothetical protein MGCH7_ch7g548 [Magnaporthe oryzae 70-15]
          Length = 877

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK-IKT 61
             D+FCG GG                 ++ E   ++  TY+ NFP   +F GDI   ++ 
Sbjct: 455 FGDMFCGAGGASQGARAAGFRLG----YAVEHWNHAAATYRHNFPEVNLFEGDIFDFLQR 510

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
            D+   D+L    PCQ +S A
Sbjct: 511 NDLDFVDILHLSPPCQYWSPA 531


>gi|114629604|ref|XP_001151712.1| PREDICTED: DNA methyltransferase 2 isoform 2 [Pan troglodytes]
 gi|119606625|gb|EAW86219.1| hCG23994, isoform CRA_c [Homo sapiens]
 gi|167887562|gb|ACA05986.1| tRNA aspartic acid methyltransferase 1 variant 1 [Homo sapiens]
          Length = 345

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           ++      D++L   PCQPF++
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTR 84


>gi|114629602|ref|XP_001151777.1| PREDICTED: DNA methyltransferase 2 isoform 3 [Pan troglodytes]
 gi|119606624|gb|EAW86218.1| hCG23994, isoform CRA_b [Homo sapiens]
 gi|167887560|gb|ACA05984.1| tRNA aspartic acid methyltransferase 1 variant 2 [Homo sapiens]
          Length = 367

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           ++      D++L   PCQPF++
Sbjct: 62 LEEFDRLSFDMILMSPPCQPFTR 84


>gi|169825443|ref|YP_001695618.1| modification methylase PspPI [Lysinibacillus sphaericus C3-41]
 gi|168994720|gb|ACA42259.1| Modification methylase PspPI [Lysinibacillus sphaericus C3-41]
          Length = 475

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K+   F G G     L++       +  F+ E +  +  TY+AN  + +   DI     
Sbjct: 145 IKVASFFAGSGIGDQGLKEA----GFDIVFALENDINAADTYRANHGDHITVQDIEDFDG 200

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
             +   +      PC  ++ A
Sbjct: 201 STLNGIEFAFGSPPCVDYTPA 221


>gi|241832196|ref|XP_002414890.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
 gi|215509102|gb|EEC18555.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
          Length = 361

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ +L+ GIGG+                 + ++N  +  TY  NFP T L+  ++  + 
Sbjct: 19 LRVLELYSGIGGMHF----ACPPDKTRVVAAVDVNTTANATYAFNFPETRLLQRNVQSLT 74

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
           +++     DVL    PCQPF++ G
Sbjct: 75 ARELDALRPDVLTMSPPCQPFTRQG 99


>gi|229586279|ref|YP_002844780.1| Site-specific DNA methylase [Rickettsia africae ESF-5]
 gi|228021329|gb|ACP53037.1| Site-specific DNA methylase [Rickettsia africae ESF-5]
          Length = 65

 Score = 74.0 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 35 INPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+    + Y+ NF +   +GDI +I    IP HD+L AGFPCQ FS +G
Sbjct: 5  IDKDVQEAYKRNFGDKP-YGDITEISETKIPKHDILCAGFPCQSFSISG 52


>gi|167897069|ref|ZP_02484471.1| modification methylase (cytosine-specific DNA methylase)
          [Burkholderia pseudomallei 7894]
          Length = 349

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
              DLFCG GG+ + L++             E NP + +TY+ N     I+  DI  + 
Sbjct: 6  YTAIDLFCGAGGLTVGLKKA----GFRVLAGIENNPIAAETYKLNNRAAKIYQDDIRMLC 61

Query: 61 TQDI--------PDHDVLLAGFPCQPFS 80
             +         + D+L    PCQ FS
Sbjct: 62 PTTVMQELGLKRGELDLLAGCPPCQGFS 89


>gi|110799652|ref|YP_695464.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674299|gb|ABG83286.1| DNA-cytosine methyltransferase [Clostridium perfringens ATCC 13124]
          Length = 446

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 38/119 (31%), Gaps = 40/119 (33%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------------ 48
           M    DLF G GG+    +        +   + E++  +VKTY  N              
Sbjct: 1   MYTYIDLFAGPGGLCTGFKNA----GFKPLIAVEMSDNTVKTYARNHEAEVYSLQELLEN 56

Query: 49  --------------NTLIFGDIAKIKTQDI----------PDHDVLLAGFPCQPFSQAG 83
                           LI GDI  +    I             DV+  G PC+ FS AG
Sbjct: 57  KGRLEEILNINTDNTCLIHGDIRLVDNDIIVEILQKKFKTNSVDVVAGGPPCESFSLAG 115


>gi|156541588|ref|XP_001600175.1| PREDICTED: similar to DNA (cytosine-5)-methyltransferase [Nasonia
            vitripennis]
          Length = 1392

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 20/95 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------------FP 48
            L+  D+F G GG+   L+Q       E  ++ E +  +   Y+ N             F 
Sbjct: 918  LRTLDVFAGCGGLSEGLKQAGVA---ESLWAIENDTAAAHAYRLNNPKASVFTTDCNSFL 974

Query: 49   NTLIFGDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
              +I G+   +  Q +P   + D+L  G PCQ FS
Sbjct: 975  EKVINGE-TSLGGQSLPKKGEVDLLCGGPPCQGFS 1008


>gi|157952985|ref|YP_001497877.1| hypothetical protein NY2A_B681L [Paramecium bursaria Chlorella
          virus NY2A]
 gi|155123212|gb|ABT15080.1| hypothetical protein NY2A_B681L [Paramecium bursaria Chlorella
          virus NY2A]
          Length = 350

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  +LF GIGGI   L        VE     E    +            + GDI K   
Sbjct: 3  LKALELFAGIGGITYGLR-----GYVEPIAFCEYEKDAAAFLSQR--GLPVHGDITKFDA 55

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 D++ AG+PC  FS AG
Sbjct: 56 SVYKTKIDIVTAGWPCTGFSTAG 78


>gi|302673748|ref|XP_003026560.1| hypothetical protein SCHCODRAFT_62152 [Schizophyllum commune H4-8]
 gi|300100243|gb|EFI91657.1| hypothetical protein SCHCODRAFT_62152 [Schizophyllum commune H4-8]
          Length = 345

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 24/101 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-------- 54
           +  + + GIGG+ L LE++     V C F  + +  + + Y+ NFP T +          
Sbjct: 4   RALEFYSGIGGLHLALERSKIAGQVACAF--DWDQAAEQVYKHNFPATPVKRVRDMIPHA 61

Query: 55  ----------DIAKIKTQD----IPDHDVLLAGFPCQPFSQ 81
                     DI+ +         PD D+ L    CQP++ 
Sbjct: 62  HRYTDLSTQVDISTLTASSLRDLFPDIDIWLLSPACQPYTV 102


>gi|316970903|gb|EFV54759.1| putative PWWP domain protein [Trichinella spiralis]
          Length = 613

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD---IA 57
           +++  LF GI   ++ L++     N+E ++S EI+  ++   + N  N +++ GD   I 
Sbjct: 326 IRVLSLFDGIATGKIALDELG--INIEIYYSCEIDQEALLVTKVNHENQIVYLGDVRGIT 383

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQA 82
           + K ++I   D+L+ G PC   S A
Sbjct: 384 REKLEEISPIDLLIGGSPCNDVSIA 408


>gi|331000405|ref|ZP_08324080.1| DNA (cytosine-5-)-methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329571737|gb|EGG53417.1| DNA (cytosine-5-)-methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 392

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-NHRNVECFFSSEINPYSVKTYQAN-----FPNTL-IFG 54
           L + ++F G GGI L L QT     + +  ++++ +  + +TY+ N         L I  
Sbjct: 31  LTVGEMFSGPGGIGLALNQTKRGKLSFKHLWATDYDSDTCETYRKNIFTGIHKEALSICK 90

Query: 55  DIAKIK-TQDIPDHDVLLAGFPCQPFSQAG 83
           DI ++   +++P  D  L GFPC  FS  G
Sbjct: 91  DIREVDIAKELPQADGFLYGFPCNDFSNVG 120


>gi|291165152|gb|ADD81179.1| gp74 [Rhodococcus phage ReqiPine5]
          Length = 377

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQT---FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA 57
          M  + +LF G GG    L                  E + ++  T +A   +  +  DIA
Sbjct: 1  MYDVVELFAGPGGTSEGLRMAAPDLKSNGY------EWDEHACATARA-AGHERVQADIA 53

Query: 58 KIKTQDIPD---HDVLLAGFPCQPFSQAG 83
          K+  + +P+      ++   PCQ FS AG
Sbjct: 54 KVDPRRVPELSAVHGVIGTPPCQGFSPAG 82


>gi|168018932|ref|XP_001761999.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686716|gb|EDQ73103.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 970

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           +  LF G+GGI   L +     +    +SSE+   +++  ++  P     GDI K+    
Sbjct: 356 VLSLFDGLGGIWQALTKLGIPFSG---YSSEVLAPAIQVVKSRHPRVKHVGDIRKLNLSA 412

Query: 64  IPD-HDVLLAGFPCQPFSQAG 83
           +P+  D+++ GFPCQ  S  G
Sbjct: 413 VPEKVDLVVGGFPCQDLSIMG 433


>gi|327274474|ref|XP_003222002.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
          (cytosine-5-)-methyltransferase-like [Anolis
          carolinensis]
          Length = 391

 Score = 73.6 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L++ +L+ GIGG+   L+ +  +   E   + ++N  + + Y  NF  T ++   I  I 
Sbjct: 4  LRVLELYSGIGGMHYALQAS--NILAEIVAAVDVNTVANEVYTHNFCTTPLWPKTIEGIS 61

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           ++      +L   PCQPF++ G
Sbjct: 62 LKEFNKX--ILMSPPCQPFTRIG 82


>gi|86559667|ref|YP_473487.1| cytosine methyltransferase [Clostridium perfringens]
 gi|86475939|dbj|BAE79114.1| cytosine methyltransferase [Clostridium perfringens]
          Length = 314

 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLGLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLITYGFPCTDISLAG 82


>gi|86559571|ref|YP_473392.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
          str. F4969]
 gi|168215006|ref|ZP_02640631.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
          str. F4969]
 gi|86475843|dbj|BAE79019.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens]
 gi|94958361|gb|ABF47322.1| Dcm [Clostridium perfringens]
 gi|170713579|gb|EDT25761.1| C-5 cytosine-specific DNA methylase [Clostridium perfringens CPE
          str. F4969]
          Length = 339

 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANF--PNTLIFGDIA 57
          +K+  LF GIG      E+   ++N+E       E + Y+   Y   F         D+ 
Sbjct: 1  MKVLGLFSGIG----AFERAIENKNIEHEIVNYCEKDRYASYAYSKLFRLSEAKNLWDVN 56

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +      D D++  GFPC   S AG
Sbjct: 57 WVDGTHFKDIDLITYGFPCTDISLAG 82


>gi|221108933|ref|XP_002155714.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase 1,
           partial [Hydra magnipapillata]
          Length = 1138

 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-D----- 55
           L+  D+F G GG+   L+Q     +    ++ E  P + + Y+ N P+ ++F  D     
Sbjct: 643 LRTLDIFAGCGGLSEGLDQVGVVNSC---WAIEFEPSAAQAYRLNNPSAIVFNQDCNNVL 699

Query: 56  --IAKIKTQD-----IP---DHDVLLAGFPCQPFS 80
             I + K +D     +P   + D+L  G PCQ FS
Sbjct: 700 KQIMEGKEKDDLGQRLPRRGEVDLLCGGPPCQGFS 734


>gi|195578681|ref|XP_002079192.1| GD23816 [Drosophila simulans]
 gi|194191201|gb|EDX04777.1| GD23816 [Drosophila simulans]
          Length = 345

 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
           ++ +LF GIGG+    +      + E   + ++N  +   Y  N+ + L+   +I  + 
Sbjct: 3  FRVLELFSGIGGMHYAFKYA--QLDGEIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLS 60

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           +++     ++LL   PCQP ++ G
Sbjct: 61 VKEVTKLQANMLLMSPPCQPHTRQG 85


>gi|167744430|ref|ZP_02417204.1| hypothetical protein Bpse14_40548 [Burkholderia pseudomallei 14]
          Length = 349

 Score = 73.6 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQD 63
           DLFCG GG+ + L++             E NP + +TY+ N     I+  DI  +    
Sbjct: 9  IDLFCGAGGLTVGLKKA----GFRVLAGIENNPIAAETYKLNNRAAKIYQDDIRMLCPTT 64

Query: 64 I--------PDHDVLLAGFPCQPFS 80
          +         + D+L    PCQ FS
Sbjct: 65 VMQELGLKRGELDLLAGCPPCQGFS 89


>gi|258515652|ref|YP_003191874.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779357|gb|ACV63251.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 464

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 23/99 (23%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIF-------- 53
             DLF G GGI L L         + FF+ E +P + +T + N    N + +        
Sbjct: 37  YIDLFAGCGGISLGLMNA----GWQGFFAIEKSPMAFETLKYNLIDGNKVHYNWPKWLSK 92

Query: 54  --GDIAKIKTQDIP-------DHDVLLAGFPCQPFSQAG 83
              DI K + +            D++  G PCQ +S AG
Sbjct: 93  EPHDICKFRVRFWRQLKTISGQIDLIAGGPPCQGYSFAG 131


>gi|17225496|gb|AAL37432.1|AF328909_1 putative cytosine-specific DNA methyltransferase [Helicobacter
          pylori]
 gi|17225522|gb|AAL37451.1|AF328916_1 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 361

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDI--AK 58
           KI DLFCG GG    L      +  +     + +  ++ T++ N  N + + GDI   +
Sbjct: 3  YKILDLFCGAGGFSAGL---GYLKEFDALIGLDCDKQALITFENNHKNAIGVCGDITQTE 59

Query: 59 IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
          IK + I      + ++++ G PCQ FS  G
Sbjct: 60 IKEKVIELAKKLEINMIIGGPPCQGFSNKG 89


>gi|114570713|ref|YP_757393.1| DNA (cytosine-5-)-methyltransferase [Maricaulis maris MCS10]
 gi|114341175|gb|ABI66455.1| DNA (cytosine-5-)-methyltransferase [Maricaulis maris MCS10]
          Length = 375

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          + I DLFCG GG+ L      ++       + +++      Y+ NF        D+AK K
Sbjct: 1  MNIVDLFCGCGGLSLGA----HYAGFNTALAVDVDNDLRSAYRRNFGVGNAEKLDLAKTK 56

Query: 61 TQDI-----PDHDV-LLAGFPCQPFSQAG 83
             +     P+  V ++ G PCQ FS  G
Sbjct: 57 AATLKRKSGPERPVGVIGGPPCQGFSVMG 85


>gi|238760580|ref|ZP_04621711.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
 gi|238701199|gb|EEP93785.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
          Length = 304

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +K  DLF GIGG             V+  +++     +V+++  N P    +  D+ +  
Sbjct: 1  MKAIDLFSGIGGSSTGAAMA----GVQVVWAANHWQEAVRSHAENHPLAVHVCQDLHQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
             +P HD+++A   CQ  S+A
Sbjct: 57 WSQVPHHDLMMASPCCQGHSKA 78


>gi|213691014|ref|YP_002321600.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213522475|gb|ACJ51222.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320457065|dbj|BAJ67686.1| putative DNA methylase [Bifidobacterium longum subsp. infantis
          ATCC 15697]
          Length = 390

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKI 59
           + F GIG  RL LE+          +S++I+    + Y+  F N     TLI GD+ ++
Sbjct: 19 LEFFAGIGLARLGLEEA----GFHVAWSNDIDHAKCQMYRNQFGNNEQEHTLIEGDMGEL 74

Query: 60 KTQDIP-DHDVLLAGFPCQPFSQAG 83
             D+P +  +     PC   S AG
Sbjct: 75 HGSDLPHNISIAWGSSPCTDISLAG 99


>gi|291515626|emb|CBK64836.1| DNA-methyltransferase (dcm) [Alistipes shahii WAL 8301]
          Length = 360

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   +      +        +++      Y+ N     I+ DI  +  
Sbjct: 14 IEVIDLFCGIGGLSFGM----KSKGFNILAGYDLDATCRYAYETNNNAKFIYKDIKTVSP 69

Query: 62 QDIP------DHDVLLAGFPCQPFS 80
           +I          VL    PCQPFS
Sbjct: 70 DEIRTAYGKGSIRVLAGCAPCQPFS 94


>gi|261820947|ref|YP_003259053.1| DNA-cytosine methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261604960|gb|ACX87446.1| DNA-cytosine methyltransferase [Pectobacterium wasabiae WPP163]
          Length = 487

 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   +  GI      +   +    ++  + SEI+P+        +P+    GD+ +I  
Sbjct: 10 LQFGSVCSGI----EAVSLAWEPLGMKAAWFSEIDPFPCAVLAHRYPHVPNLGDMTRIAN 65

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
          Q    ++   D+L+ G PCQ FS AG
Sbjct: 66 QVRVGEVIAPDILVGGTPCQAFSIAG 91


>gi|323350984|ref|ZP_08086641.1| modification methylase HgiDII [Streptococcus sanguinis VMC66]
 gi|322122708|gb|EFX94417.1| modification methylase HgiDII [Streptococcus sanguinis VMC66]
          Length = 352

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +KI   DLFCG+GG+   +++T     +      +I+  S   Y+ N   T I  D+ +I
Sbjct: 1  MKINAIDLFCGVGGLTYGIQKT----GINVIAGYDIDEKSKFAYEYNNDATFILKDVKEI 56

Query: 60 KTQDI-----PDHD--VLLAGFPCQPFS 80
            ++I      D D  VL+   PCQPFS
Sbjct: 57 DDREISNLYPKDTDIKVLIGCAPCQPFS 84


>gi|23306232|emb|CAD43079.1| DNA methyltransferase 1c [Paracentrotus lividus]
          Length = 1375

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 1132 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1188

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1189 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1223


>gi|12230342|sp|Q27746|DNMT1_PARLI RecName: Full=DNA (cytosine-5)-methyltransferase PliMCI; AltName:
            Full=DNA methyltransferase PliMCI; Short=DNA MTase
            PliMCI; Short=M.PliMCI; AltName: Full=Dnmt1; AltName:
            Full=MCMT
 gi|1004286|emb|CAA90563.1| DNA (cytosine-5-)-methyltransferase [Paracentrotus lividus]
          Length = 1612

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 1131 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1187

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1188 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1222


>gi|23306229|emb|CAD42182.3| DNA methyltransferase [Paracentrotus lividus]
          Length = 1613

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 1132 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1188

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1189 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1223


>gi|23306234|emb|CAD43089.1| DNA methyltransferase 1e [Paracentrotus lividus]
          Length = 1335

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 1132 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1188

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1189 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1223


>gi|23306233|emb|CAD43080.2| DNA methyltransferase 1d [Paracentrotus lividus]
          Length = 1429

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 1132 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1188

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1189 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1223


>gi|23306230|emb|CAD43077.1| DNA methyltransferase 1a [Paracentrotus lividus]
          Length = 1461

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            LK  D+F G GG+     Q       E  ++ E    + + Y+ N P + +F D      
Sbjct: 980  LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELL 1036

Query: 57   --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1037 RLVMQGEKTSRTGQKLPQKGDVELLCGGPPCQGFS 1071


>gi|145218897|ref|YP_001129606.1| DNA-cytosine methyltransferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145205061|gb|ABP36104.1| DNA-cytosine methyltransferase [Chlorobium phaeovibrioides DSM 265]
          Length = 467

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 43/117 (36%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----------LIFG 54
           DLF G GG+ L LE           F +E+N  ++ TY  N  +T           L   
Sbjct: 26  DLFAGCGGLSLGLENA----GFTPIFVNELNEDALATYLMNRHHTLGGLKFSDNANLRCN 81

Query: 55  DIAKIKT----------QDIPDH------------------DVLLAGFPCQPFSQAG 83
           D  ++            ++IP+                   D++  G PCQ FS  G
Sbjct: 82  DAHELDNNRLARLKSDLENIPEANISFNNPKTPKNGGGGTLDIIAGGPPCQGFSGIG 138


>gi|262201418|ref|YP_003272626.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262084765|gb|ACY20733.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
          Length = 342

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + D F G GG             ++     + +P +  T++ NF   + I GDI  + T+
Sbjct: 8  VVDFFSGCGGTSAGFRSA----GMQIAAGLDSDPDASATFKRNFKKSSFIEGDIRNVSTE 63

Query: 63 DIPD------HDVLLAGFPCQPFSQ 81
           + D        +     PCQPFS+
Sbjct: 64 QVSDVVPSGAVTLFAGCAPCQPFSR 88


>gi|110765384|ref|XP_001122269.1| PREDICTED: DNA (cytosine-5)-methyltransferase PliMCI [Apis mellifera]
          Length = 1427

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            LK  D+F G GG+   L Q     N    ++ E +  +   Y+ N PNT +F        
Sbjct: 956  LKTLDVFAGCGGLSEGLRQAGIVDNQ---WAIEKDEPAACAYRLNNPNTTVFCEDCNVLL 1012

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD+     Q +P   + ++L  G PCQ FS
Sbjct: 1013 RKVMNGDLCDNNGQRLPQKGEVELLCGGPPCQGFS 1047


>gi|18202008|sp|O31073|MTS1_STRAH RecName: Full=Modification methylase SacI; Short=M.SacI; AltName:
           Full=Cytosine-specific methyltransferase SacI
 gi|2605794|gb|AAC97118.1| SacI methylase [Streptomyces achromogenes]
          Length = 390

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 4   ITDLFCGIGGIRLDLE--------QTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFG 54
           +  LF G GG+   +E        Q  +   +    +++    ++ T  ANFP+T  + G
Sbjct: 7   VISLFSGAGGLDCAIESCAEPPLVQDGSGSPLRVAVATDYEQTALDTLSANFPHTKTLCG 66

Query: 55  DIAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
           DI  I T ++         D  +++ G PC PFS++G
Sbjct: 67  DIQTIPTAELLEAGGLKPGDPTLVIGGPPCTPFSKSG 103


>gi|186472257|ref|YP_001859599.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
 gi|184194589|gb|ACC72553.1| DNA-cytosine methyltransferase [Burkholderia phymatum STM815]
          Length = 356

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 13/90 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
            +   F G GG  L           +   + E N     ++ ANFP+  +  GDIA +  
Sbjct: 24  TVVSTFAGCGGSSLGYSMA----GFDERLAVEWNEKQAASFVANFPHVPLHLGDIADLSD 79

Query: 62  QD--------IPDHDVLLAGFPCQPFSQAG 83
            D          + DV     PCQ FS AG
Sbjct: 80  ADALRMARLEPGELDVFDGSPPCQGFSLAG 109


>gi|300905017|ref|ZP_07122835.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|301305818|ref|ZP_07211903.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300403166|gb|EFJ86704.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300838908|gb|EFK66668.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|315254408|gb|EFU34376.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 85-1]
          Length = 354

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ D F G GG      Q      ++  F  + +  +  +++ANFP    I  DI  I 
Sbjct: 12 IKVFDFFSGCGGTSQGFHQA----GMDIVFGLDFDVDAASSFRANFPQAAFINSDIRLID 67

Query: 61 TQDIPD------HDVLL--AGFPCQPFS 80
             I        +D +L     PCQP+S
Sbjct: 68 NNAINKLVKKHRNDYILFSGCAPCQPYS 95


>gi|156365066|ref|XP_001626663.1| predicted protein [Nematostella vectensis]
 gi|156213548|gb|EDO34563.1| predicted protein [Nematostella vectensis]
          Length = 1263

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
           L+  D+F G GG+   L Q       E  ++ E    + + Y+ N P   +F D      
Sbjct: 789 LRSLDVFAGCGGLSEGLHQAGVA---ESLWAIEKEEPAAQAYRLNNPGCTVFTDDCNTLL 845

Query: 57  --------AKIKTQDIP---DHDVLLAGFPCQPFS 80
                        Q IP   + ++L  G PCQ FS
Sbjct: 846 KLAMEGEATNSTGQKIPQRGEVELLCGGPPCQGFS 880


>gi|112818953|gb|ABI23560.1| DNA methyltransferase 2 [Artemia franciscana]
          Length = 379

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +++ +LF G+GG+ +         N++   S EIN  +VKTYQ NF + ++   +I  + 
Sbjct: 4  IQVLELFAGLGGLHIA-VNNQKDANIQVVKSFEINVNAVKTYQENFGHDVVSNRNILSLS 62

Query: 61 TQDI--PDHDVLLAGFPCQPFSQAG 83
          T+++   + + +    PCQPF++ G
Sbjct: 63 TEELFRQNVNAIFMSPPCQPFTRLG 87


>gi|315506801|ref|YP_004085688.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
 gi|315413420|gb|ADU11537.1| DNA-cytosine methyltransferase [Micromonospora sp. L5]
          Length = 412

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           ++ ++  G GG  L LE+       E   + E++  + KT + N P+  +  GD+A   
Sbjct: 4  FEVIEICAGAGGQALGLEKA----GFEHALAVELDSNACKTLEENRPSWKIAQGDVA--D 57

Query: 61 TQDIPDHD-----VLLAGFPCQPFSQAG 83
           +     D     +L  G PC PFS AG
Sbjct: 58 EEVWRPADHQGVSLLAGGVPCPPFSIAG 85


>gi|296206224|ref|XP_002750114.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 3
          [Callithrix jacchus]
          Length = 345

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           Q+      D++L   PCQPF++
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTR 84


>gi|296206222|ref|XP_002750113.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform 2
          [Callithrix jacchus]
          Length = 367

 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +    I  I 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYRFNFPHTQLLAKTIEGIT 61

Query: 61 TQDIP--DHDVLLAGFPCQPFSQ 81
           Q+      D++L   PCQPF++
Sbjct: 62 LQEFDRLSFDMILMSPPCQPFTR 84


>gi|309379397|emb|CBX21964.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 195

 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIA 57
           +++  +F GIG     +EQ F   + N    F+ +I+ +  K+Y  N+         DI 
Sbjct: 38  IRLATVFSGIG----AVEQAFYRLNLNHTIVFAGDIDSHVKKSYLGNYKLNEDFWHNDIT 93

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +   +   +  D+L+ G PCQ FS  G
Sbjct: 94  QFDARKFRNQVDILVGGSPCQAFSMVG 120


>gi|71361889|gb|AAZ30053.1| C5-cytosine methyltransferase [Halorubrum saccharovorum]
          Length = 408

 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 38/112 (33%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---------------- 46
           K+ DLFCG GG  L   Q       E   + +    ++ TYQ N                
Sbjct: 5   KVVDLFCGAGGASLGFVQA----GYEVVGAVDAYERALNTYQKNLCQRSLDEYSGSVSFD 60

Query: 47  ----------FPN--------TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
                     + +        T+ F DI +    +  D DV+    PCQ FS
Sbjct: 61  APLQADLSRGYEDNDVDNELPTVTFEDIREEFDLEKGDIDVICGCPPCQNFS 112


>gi|222618843|gb|EEE54975.1| hypothetical protein OsJ_02581 [Oryza sativa Japonica Group]
          Length = 353

 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ + + GIGG+R  L  +      E   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 8  KVLEFYSGIGGMRYSLAASGARA--EVVEAFDINDVANDVYELNFGHRPYQGNIQTLTAS 65

Query: 63 DIP--DHDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 66 DLDKYKAQAWLLSPPCQPYTRQG 88


>gi|218188646|gb|EEC71073.1| hypothetical protein OsI_02832 [Oryza sativa Indica Group]
          Length = 353

 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ + + GIGG+R  L  +      E   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 8  KVLEFYSGIGGMRYSLAASGARA--EVVEAFDINDVANDVYELNFGHRPYQGNIQTLTAS 65

Query: 63 DIP--DHDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 66 DLDKYKAQAWLLSPPCQPYTRQG 88


>gi|209883303|ref|YP_002287160.1| C-5 cytosine-specific DNA methylase [Oligotropha carboxidovorans
          OM5]
 gi|209871499|gb|ACI91295.1| C-5 cytosine-specific DNA methylase [Oligotropha carboxidovorans
          OM5]
          Length = 562

 Score = 72.9 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPNTLIFGDIAKI 59
          +   DL+ G+GG  L L        ++   S E++ ++ KT   N   P + +  DI KI
Sbjct: 8  ITAIDLYSGVGGWSLGLRLA----GIDVIASYELSEFANKTNDLNNSHPTSTV--DIRKI 61

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQA 82
            + +P   DV++   PC  FS A
Sbjct: 62 DLKSLPKNVDVVVGSPPCTQFSYA 85


>gi|145629891|ref|ZP_01785682.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          22.1-21]
 gi|144977718|gb|EDJ87668.1| modification methylase Bsp6I-like protein [Haemophilus influenzae
          22.1-21]
          Length = 411

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----DIPDHDVLLAGFPCQPFSQA 82
           +  + SEI P+       ++PN    GD+  +  +    +IP  DVL+ G PCQ FS A
Sbjct: 9  GKPLWFSEIEPFPCAVLTYHYPNIPNLGDMTTLPEKILNREIPAPDVLVGGTPCQAFSIA 68

Query: 83 G 83
          G
Sbjct: 69 G 69


>gi|196037189|ref|ZP_03104504.1| modification methylase HaeIII [Bacillus cereus W]
 gi|195990293|gb|EDX54346.1| modification methylase HaeIII [Bacillus cereus W]
          Length = 415

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 28/108 (25%)

Query: 2   LKITDLFCGIGGIRLDLE--------------QTFNHRN----------VECFFSSEINP 37
           + I  LF G GG+ L +E              + F ++               +S+++  
Sbjct: 63  MNIVSLFSGAGGLDLGVELSSMVVQFGEEKAYRAFENKEDYLKLRSIVKSNFVYSNDMFT 122

Query: 38  YSVKTYQANFPNTL--IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            +  TY  NF  T+  +  DI K+   + P+ +++L GFPC  FS +G
Sbjct: 123 SANLTYVNNFAPTVTKVAKDIRKV--AEFPNCNLMLGGFPCPGFSSSG 168


>gi|295687890|ref|YP_003591583.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295429793|gb|ADG08965.1| DNA-cytosine methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 379

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K+ +LFCG GG              E   + +++     +Y+ NFP T L   D+ ++ 
Sbjct: 1  MKLVELFCGTGGFSRGAHAA----GFEVAVAYDLDKTLTSSYEINFPQTKLRHEDVGELT 56

Query: 61 TQDIP-----DHDVLLAGFPCQPFSQAG 83
             I      +   L  G PCQ FS  G
Sbjct: 57 GDKIRAEVGDEVFGLFGGPPCQGFSDIG 84


>gi|332530473|ref|ZP_08406414.1| DNA cytosine methyltransferase M.NgoMIII [Hylemonella gracilis
          ATCC 19624]
 gi|332040042|gb|EGI76427.1| DNA cytosine methyltransferase M.NgoMIII [Hylemonella gracilis
          ATCC 19624]
          Length = 413

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 21/97 (21%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTL 51
          L   +LF G GG+ + +               E + ++  T + N          +P  +
Sbjct: 3  LTSIELFAGAGGLAMGVALA----GFRSHAVVEWDKWACDTVRQNQERGHPLVRDWP--V 56

Query: 52 IFGDIA----KIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          + GD+           +    D+L  G PCQPFS  G
Sbjct: 57 VEGDVRNWARDFDASGLEGKLDLLAGGPPCQPFSMGG 93


>gi|117620606|ref|YP_855619.1| modification methylase DdeI [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562013|gb|ABK38961.1| modification methylase DdeI [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 440

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 31/104 (29%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPN--- 49
              DLF G GG+ L L Q       +  F+ E    + +T Q N          +PN   
Sbjct: 12  TFIDLFSGCGGLSLGLMQA----GWKGLFAIEKTSGAFETLQHNLLGGGRYTYDWPNWLP 67

Query: 50  ----------TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                         G+++ +        D+++ G PCQ FS AG
Sbjct: 68  KSNMTVDTLLENHKGNLSLLAG----KVDLIVGGPPCQGFSLAG 107


>gi|331086924|ref|ZP_08336001.1| hypothetical protein HMPREF0987_02304 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410090|gb|EGG89525.1| hypothetical protein HMPREF0987_02304 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFG-D 55
            DLFCG GG    L Q          FSS+I+     TY             NT     D
Sbjct: 5   VDLFCGAGGCSEGLIQA----GFHILFSSDISDMVELTYTHRHEQLGLIQGKNTWFERSD 60

Query: 56  IAKIKTQDI---------------PDHDVLLAGFPCQPFSQAG 83
           I  +   DI               P+ D+++ G  CQ FS+AG
Sbjct: 61  IRDLTGNDIRKYITNLEIFKGKEMPEIDLMIGGPSCQGFSRAG 103


>gi|299820316|gb|ADJ54326.1| C5-cytosine specific methylase [archaeon enrichment culture clone
          1(2010)]
          Length = 396

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAK 58
          LK+ DL+ G+GG+ L +      +  E     EIN  +V TY  N   +       D+ +
Sbjct: 4  LKVLDLYSGLGGLSLGVAIALRPK--EIIGL-EINKNAVDTYNLNLSRYNAKAFRQDVLQ 60

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
           + +    +D+++ G PC+PFS A
Sbjct: 61 WQPE--GHYDLIIGGSPCEPFSIA 82


>gi|330465519|ref|YP_004403262.1| DNA-cytosine methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808490|gb|AEB42662.1| DNA-cytosine methyltransferase [Verrucosispora maris AB-18-032]
          Length = 392

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKI 59
           + F GIG +RL LE        +  +S++I P   + Y  +F +     T   GDIA +
Sbjct: 19 AEFFAGIGLVRLGLEDA----GFKVIWSNDIEPDKKEMYVRHFNDPEGTHTYKRGDIADV 74

Query: 60 K-TQDIPDHDVLLAGFPCQPFSQAG 83
          +  Q + +  +  A FPC   S AG
Sbjct: 75 RGPQMVDELSLAWASFPCTDLSLAG 99


>gi|301382137|ref|ZP_07230555.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
          Length = 320

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +EI+P+       ++P T   GD+ K   
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIDPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIDAPDVLVGGTPCQAFSVAG 91


>gi|260431846|ref|ZP_05785817.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260415674|gb|EEX08933.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 381

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 27 VECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            C F+++I+     +Y+AN      L+  D+AK+   +IP   D++ A FPCQ  S AG
Sbjct: 23 WTCLFANDIDAKKAASYRANHDGGRELLLKDVAKVTVDEIPGSADLVWASFPCQDLSLAG 82


>gi|322377723|ref|ZP_08052213.1| modification methylase HgiDII [Streptococcus sp. M334]
 gi|321281488|gb|EFX58498.1| modification methylase HgiDII [Streptococcus sp. M334]
          Length = 351

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          +KI   DLFCG+GG+   ++Q      +      +I+  S   Y+ N     I  DI  I
Sbjct: 1  MKINAVDLFCGVGGLTYGIQQA----GINVVAGYDIDEKSKFAYEYNNDAKFILKDINGI 56

Query: 60 KTQDI-----PDHD--VLLAGFPCQPFS 80
          +  +I      D D  VL+   PCQPFS
Sbjct: 57 EDDEILGLYPSDTDIKVLIGCAPCQPFS 84


>gi|261495470|ref|ZP_05991917.1| modification methylase Bsp6I-like protein [Mannheimia haemolytica
          serotype A2 str. OVINE]
 gi|261308804|gb|EEY10060.1| modification methylase Bsp6I-like protein [Mannheimia haemolytica
          serotype A2 str. OVINE]
          Length = 157

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IA--- 57
               +  GI          ++       + SEI P+        FP+    GD IA   
Sbjct: 4  FTYGSICSGI----EAASVAWHDIG-TPLWFSEIEPFPCAVLAHRFPDVPNLGDMIALPE 58

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          KI  ++IP  DVL+ G PCQ FS AG
Sbjct: 59 KILNREIPAPDVLVGGTPCQAFSMAG 84


>gi|256811042|ref|YP_003128411.1| DNA-cytosine methyltransferase [Methanocaldococcus fervens AG86]
 gi|256794242|gb|ACV24911.1| DNA-cytosine methyltransferase [Methanocaldococcus fervens AG86]
          Length = 362

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 62/140 (44%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------- 51
           MLK  DLFCG GG      +       E   + E+N  +  +Y  NF   +         
Sbjct: 1   MLKFIDLFCGCGGFSRGFVE----EGFEPLVAVELNEDAAFSYALNFNGKIYEKIKPGEF 56

Query: 52  -------------------------------------------IFGDIAKIKTQDIPDH- 67
                                                      I  DI +I + +I    
Sbjct: 57  RLKELKGYVGIYPFKFPFEDEDIKWLKKLGTLNEKTEKLSPVVINDDIREIHSIEIEKFC 116

Query: 68  -----DVLLAGFPCQPFSQA 82
                DV++ G PC+ ++ A
Sbjct: 117 KNKKVDVIIGGPPCEGYTGA 136


>gi|270015149|gb|EFA11597.1| DNA methyltransferase 1 [Tribolium castaneum]
          Length = 1882

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK  D+F G GG+                ++ E +  ++ T++ N     +F D   +  
Sbjct: 753 LKCLDVFAGCGGLSQGFHAAGVAN---TKWAIENDKPALDTFRHNNRTCHVFRDDCNVLL 809

Query: 62  QDI----------PDHDVLLAGFPCQPFS 80
           +++           + ++++ G PCQ FS
Sbjct: 810 RNVMSGKGGLPPKSEVEMIVGGPPCQGFS 838


>gi|157953809|ref|YP_001498700.1| hypothetical protein AR158_C619L [Paramecium bursaria Chlorella
          virus AR158]
 gi|156068457|gb|ABU44164.1| hypothetical protein AR158_C619L [Paramecium bursaria Chlorella
          virus AR158]
          Length = 363

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI   L        VE     E    +            + GDI K   
Sbjct: 16 MKALELFAGIGGITHGLR-----GYVEPIAFCEYEKDASSFLSQR--GLPVHGDITKFDA 68

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 D++ AG+PC  FS AG
Sbjct: 69 SVYKNKIDIVTAGWPCTGFSTAG 91


>gi|227525081|ref|ZP_03955130.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
          hilgardii ATCC 8290]
 gi|227087758|gb|EEI23070.1| possible DNA (cytosine-5-)-methyltransferase [Lactobacillus
          hilgardii ATCC 8290]
          Length = 143

 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +   DLF G GG+   LEQ+     +   ++ E++      Y  N PN  +I  DI K+ 
Sbjct: 3  INAIDLFSGCGGLTEGLEQS----EINVEYAIELDRKISNIYATNHPNVKIINSDIQKVT 58

Query: 61 TQDI---PDHDVLLAGFPCQPFSQ 81
                  + +++    PCQ F+Q
Sbjct: 59 DTTFKQMENVNLVAGCPPCQGFTQ 82


>gi|330802352|ref|XP_003289182.1| hypothetical protein DICPUDRAFT_153508 [Dictyostelium purpureum]
 gi|325080758|gb|EGC34300.1| hypothetical protein DICPUDRAFT_153508 [Dictyostelium purpureum]
          Length = 378

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + + GIGG+   L+++      E   S +IN  ++  Y+  F       +I  +  
Sbjct: 18 LRVLEFYSGIGGMHYGLKESGVK--FEVVQSFDINTNAILNYKYTFNENTSQKNIESLTV 75

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
          ++I +   +  L   PCQPF+++G
Sbjct: 76 EEIDNFKSNAWLMSPPCQPFTRSG 99


>gi|311248707|ref|XP_003123295.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Sus scrofa]
          Length = 1587

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1111 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1166

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1167 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1202


>gi|222840488|gb|ACM68681.1| DNA methyltransferase 1 [Capra hircus]
          Length = 1420

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1063 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1118

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1119 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1154


>gi|194213189|ref|XP_001916472.1| PREDICTED: similar to DNA (cytosine-5)-methyltransferase 1 (Dnmt1)
            (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT)
            (M.HsaI) (CXXC-type zinc finger protein 9) [Equus
            caballus]
          Length = 1615

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1138 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1193

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1194 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1229


>gi|168805279|gb|ACA28713.1| DNA methyltransferase b [Bos taurus]
          Length = 1348

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 855 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 910

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++   + Q +P   D ++L  G PCQ FS
Sbjct: 911 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 946


>gi|317108162|ref|NP_872592.2| DNA (cytosine-5)-methyltransferase 1 [Bos taurus]
 gi|108935977|sp|Q24K09|DNMT1_BOVIN RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1
 gi|89994055|gb|AAI14064.1| DNA (cytosine-5-)-methyltransferase 1 [Bos taurus]
 gi|296485884|gb|DAA27999.1| DNA (cytosine-5)-methyltransferase 1 [Bos taurus]
          Length = 1611

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1136 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1191

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1192 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1227


>gi|37728049|gb|AAO44952.1| cytosine-5-methyltransferase [Bos taurus]
          Length = 1611

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1136 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1191

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1192 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1227


>gi|57164173|ref|NP_001009473.1| DNA (cytosine-5)-methyltransferase 1 [Ovis aries]
 gi|29536011|gb|AAO39704.1| DNA (cytosine-5)-methyltransferase 1 [Ovis aries]
          Length = 1611

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1136 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEYCNVL 1191

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1192 LKLVMGGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1227


>gi|78221478|ref|YP_383225.1| C-5 cytosine-specific DNA methylase [Geobacter metallireducens
           GS-15]
 gi|78192733|gb|ABB30500.1| C-5 cytosine-specific DNA methylase [Geobacter metallireducens
           GS-15]
          Length = 331

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L+  +LFCGIGG    +E      NV    + + +P ++ TY+ NFP       D+ ++ 
Sbjct: 27  LRTLELFCGIGGFSAAVEGG----NVRIVGAFDQDPAALDTYRLNFPGHGARKVDLERVS 82

Query: 61  TQDI--PDHDVLLAGFPCQPFSQAG 83
             ++     D+     PCQP+ + G
Sbjct: 83  AWELTAGGVDLWWLSPPCQPYCERG 107


>gi|226330016|ref|ZP_03805534.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
 gi|225200811|gb|EEG83165.1| hypothetical protein PROPEN_03929 [Proteus penneri ATCC 35198]
          Length = 325

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 33 SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          +EI+ ++  T + N P   +I GD+A I   +     DVL  GFPCQ FS AG
Sbjct: 3  NEIDKHACNTLRLNRPKWNVIEGDVAGIDFSEYKGKVDVLAGGFPCQAFSYAG 55


>gi|323454079|gb|EGB09949.1| hypothetical protein AURANDRAFT_62427 [Aureococcus anophagefferens]
          Length = 634

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKT 61
              +LF GIGG R  LE            + EI   + + Y ANF   +L    + ++  
Sbjct: 186 TFAELFAGIGGFRAGLEAAAGAPPAP-AVACEILESARRIYAANFGAESLTAAPVQRLDR 244

Query: 62  QDIPDHDVLLAGFPCQPFS-QAG 83
             +P  D+L+AGFPCQ ++ QAG
Sbjct: 245 --LPACDLLMAGFPCQSYTEQAG 265


>gi|115386470|ref|XP_001209776.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190774|gb|EAU32474.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 597

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
             + D FCG GG+     +   H      ++ +++ ++++TY  NFP T  +  D+    
Sbjct: 292 YTLGDAFCGAGGVSCGARKAGLHNE----WAVDVSQHALETYGLNFPTTDCWQADVNSFL 347

Query: 61  T--QDIPDHDVLLAGFPCQPFSQA 82
           +   D    DVL    PCQPFS A
Sbjct: 348 SLNHDYLKVDVLHGSPPCQPFSPA 371


>gi|210621902|ref|ZP_03292899.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
 gi|210154533|gb|EEA85539.1| hypothetical protein CLOHIR_00844 [Clostridium hiranonis DSM 13275]
          Length = 438

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--------PNTLIFG-D 55
            DLFCG GG    L Q          FSS+I+     TY+            NT     D
Sbjct: 5   VDLFCGAGGCSEGLIQA----GFHILFSSDISEMVEVTYKNRHEQLGLIQGKNTWFERSD 60

Query: 56  IAKIKTQDI---------------PDHDVLLAGFPCQPFSQAG 83
           I  +  + I               P+ D+L+ G  CQ FS+AG
Sbjct: 61  IRDLTGETIFKCIESLDIFKNQKIPEIDLLIGGPSCQGFSRAG 103


>gi|301766512|ref|XP_002918675.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Ailuropoda
          melanoleuca]
          Length = 391

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+  +L+ GIGG+   L ++          + ++N  + + Y+ NFP+T +      I+ 
Sbjct: 4  LRALELYSGIGGMHQALRESCVPA--HVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEG 59

Query: 62 QDIPDHD-----VLLAGFPCQPFSQAG 83
            + + D      +L   PCQPF++ G
Sbjct: 60 ITLEEFDKLSFNTILMSPPCQPFTRIG 86


>gi|311897184|dbj|BAJ29592.1| putative modification methylase [Kitasatospora setae KM-6054]
          Length = 433

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 23/98 (23%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPN----------- 49
            +LF G GG+ + + +            +E    + +T +AN     P+           
Sbjct: 15  VELFAGAGGLAMSVHRA----GFRPLLFNEFAKRACETLEANGAEWLPDGQKPTRAPESG 70

Query: 50  ---TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
               L+ GD+  +    +    DVL  G PCQPFS  G
Sbjct: 71  KKVPLVAGDVQDLDMNYLKGQVDVLAGGPPCQPFSLGG 108


>gi|283549176|ref|NP_001164521.1| DNA methyltransferase 1a [Nasonia vitripennis]
          Length = 1349

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 18/94 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD----I 56
           L+  D+F G GG+   L Q       E  ++ E++  +   Y+ N PN  +F GD    +
Sbjct: 880 LRTLDVFAGCGGLSEGLHQAGVA---ESSWAIEVDEAAAHAYRLNNPNAAVFTGDCNAYL 936

Query: 57  AKIKTQD-------IP---DHDVLLAGFPCQPFS 80
            K+   +       +P   + D+L  G PCQ FS
Sbjct: 937 KKVMDGETMAGGQRLPQRGEVDLLCGGPPCQGFS 970


>gi|332359910|gb|EGJ37724.1| C-5 cytosine-specific DNA methylase superfamily protein
           [Streptococcus sanguinis SK1056]
          Length = 516

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIFGD 55
            DLFCG GG    + Q       +  FSS+ +P   +TY                    D
Sbjct: 5   IDLFCGAGGFSEGILQA----GFDIIFSSDKSPMVEETYTNRHKQLGLVEGVDTHFELAD 60

Query: 56  IAKIKTQDI---------------PDHDVLLAGFPCQPFSQAG 83
           I ++ +  I                  DV+  G PCQ FS+ G
Sbjct: 61  IKELTSDKIFQSINSLKYGNIFERGTIDVIFGGPPCQGFSRLG 103


>gi|227540760|ref|ZP_03970809.1| DNA-cytosine methyltransferase [Corynebacterium glucuronolyticum
          ATCC 51866]
 gi|227183472|gb|EEI64444.1| DNA-cytosine methyltransferase [Corynebacterium glucuronolyticum
          ATCC 51866]
          Length = 387

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLIF 53
          ++  +LF         L    +   V    + E + ++  T + N  N         +I 
Sbjct: 3  IRAIELFA----GGGGLLLGTSSVGVNHLAAVEWDKWACDTLRENANNGHRLVAGLPVIE 58

Query: 54 GDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           D+  +     P D D++  G PCQPFS  G
Sbjct: 59 DDVRNLHWDSFPTDVDLVTGGPPCQPFSLGG 89


>gi|83942245|ref|ZP_00954706.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
 gi|83846338|gb|EAP84214.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. EE-36]
          Length = 384

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
            + FCG G +R  L+        +C  +++I+    K Y  N+    +  GDIA +   
Sbjct: 11 YAEFFCGGGMVRAALQ-----DRWDCVLANDIDAMKCKVYAQNWGQAALHQGDIATMPDD 65

Query: 63 DI-PDHDVLLAGFPCQPFSQAG 83
           +    D+  A  PCQ FS AG
Sbjct: 66 LLTRQIDMYWASSPCQDFSLAG 87


>gi|56182698|gb|AAV84097.1| CviPII m5C DNA methyltransferase [Chlorella virus]
          Length = 363

 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF GIGGI   L        VE     E    +            + GDI K   
Sbjct: 16 MKALELFAGIGGITHGLR-----GYVEPIAFCEYEKDASSFLSQR--GLPVHGDITKFDA 68

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
                 D++ AG+PC  FS AG
Sbjct: 69 SVYKNKIDIVTAGWPCTGFSTAG 91


>gi|313668701|ref|YP_004048985.1| modification methylase [Neisseria lactamica ST-640]
 gi|313006163|emb|CBN87625.1| putative modification methylase [Neisseria lactamica 020-06]
          Length = 372

 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 8  FCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
          F GIG     +EQ F   + N    F+ +I+ +  K+Y  N+         DI +   + 
Sbjct: 5  FSGIG----AVEQAFYRLNLNHTIVFAGDIDSHVKKSYLGNYKLNEDFWHNDITQFDARK 60

Query: 64 IPD-HDVLLAGFPCQPFSQAG 83
            +  D+L+ G PCQ FS  G
Sbjct: 61 FRNQVDILVGGSPCQAFSMVG 81


>gi|116007318|ref|NP_001036355.1| methyltransferase 2, isoform C [Drosophila melanogaster]
 gi|113194978|gb|ABI31309.1| methyltransferase 2, isoform C [Drosophila melanogaster]
          Length = 345

 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
           ++ +LF GIGG+           + +   + ++N  +   Y  N+ + L+   +I  + 
Sbjct: 3  FRVLELFSGIGGMHYAFNYA--QLDGQIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLS 60

Query: 61 TQDIPD--HDVLLAGFPCQPFSQAG 83
           +++     ++LL   PCQP ++ G
Sbjct: 61 VKEVTKLQANMLLMSPPCQPHTRQG 85


>gi|255514225|gb|EET90487.1| DNA-cytosine methyltransferase [Candidatus Micrarchaeum
          acidiphilum ARMAN-2]
          Length = 328

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKT 61
           + D+FCG GG     ++             +    +V T+  N   ++ +  D+  +  
Sbjct: 6  TVIDIFCGAGGFSQGFKEA----GYSILAGVDNWKPAVDTFSRNHKKSIGLEADMRSLTV 61

Query: 62 QDIP------DHDVLLAGFPCQPFSQAG 83
            +         +V++ G PCQ FS  G
Sbjct: 62 GQLKTLVSEAKVNVVIGGPPCQGFSMGG 89


>gi|168185144|ref|ZP_02619808.1| modification methylase SinI [Clostridium botulinum Bf]
 gi|182671812|gb|EDT83773.1| modification methylase SinI [Clostridium botulinum Bf]
          Length = 363

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M      F G GG+ + +               EI     +T + N+P+  +  GDI + 
Sbjct: 1  MKNAISFFTGAGGLDIGVHDA----GFNVRLCVEIEKRYCETIKLNYPDWNIKNGDIMEY 56

Query: 60 KTQDI---------PDHDVLLAGFPCQPFSQAG 83
            + I          +  ++  G PCQ FS AG
Sbjct: 57 DKERIYKEGLLNSNEEISLIFGGSPCQSFSTAG 89


>gi|210062530|gb|ACJ06270.1| DNA-cytosine methyltransferase [Photorhabdus luminescens]
          Length = 369

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   +  GI          +    +   + SEI  +     Q ++      GD+ +I T
Sbjct: 1  MRFGSVCSGI----EAASVAWEPLGMSPAWFSEIEKFPSAVLQYHWSYVRNLGDMTEIPT 56

Query: 62 ---QDIPDH-DVLLAGFPCQPFSQAG 83
             +++ D  D+L+ G PCQ FS AG
Sbjct: 57 MITENLADAPDILVGGTPCQAFSIAG 82


>gi|149204151|ref|ZP_01881119.1| C-5 cytosine-specific DNA methylase [Roseovarius sp. TM1035]
 gi|149142593|gb|EDM30638.1| C-5 cytosine-specific DNA methylase [Roseovarius sp. TM1035]
          Length = 366

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIP-DHDVLLAGFP 75
          + +     N  C  +++I+    + Y+ N+  T +F GD+A +  + +  D D+  A  P
Sbjct: 1  MVRAALQENWHCVLANDIDEMKCRVYRENWSGTGLFEGDVASLDPEFLKQDIDLYWASSP 60

Query: 76 CQPFSQAG 83
          CQ FS AG
Sbjct: 61 CQDFSLAG 68


>gi|257466255|ref|ZP_05630566.1| DNA-cytosine methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917413|ref|ZP_07913653.1| DNA-cytosine methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691288|gb|EFS28123.1| DNA-cytosine methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 407

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 33/112 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---------LI 52
            K  DLF G GG+     QT +    EC  S E     V T +    N          ++
Sbjct: 4   YKFIDLFAGCGGLEDGFMQTGD---YECISSVEWLKPQVDTLRHRLKNKYNILDADESVL 60

Query: 53  FGDIAKIKT---------------------QDIPDHDVLLAGFPCQPFSQAG 83
             DI +                        +     D+++ G PCQ +S AG
Sbjct: 61  HFDIQREDELFNGWSNDENFGSSLGLDYYVKKSNGVDLIIGGPPCQAYSIAG 112


>gi|292657161|ref|YP_003537057.1| site-specific DNA-methyltransferase (cytosine-specific) [Haloferax
           volcanii DS2]
 gi|291373000|gb|ADE05226.1| site-specific DNA-methyltransferase (cytosine-specific) [Haloferax
           volcanii DS2]
          Length = 406

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 30/103 (29%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------FPNTLIFGD 55
           + DLFCG GG  L   Q           + +IN  +++TY+ N        +P  + F  
Sbjct: 6   VVDLFCGAGGASLGFVQA----GYTVAGAVDINDEALETYKRNLCDADLDEYPGEVTFDS 61

Query: 56  ------------------IAKIKTQDIPDHDVLLAGFPCQPFS 80
                             I      +  + DV+    PCQ FS
Sbjct: 62  PLKGNLNANKGGHVTFEYIRNEFGLEPGEVDVIAGCPPCQNFS 104


>gi|312114242|ref|YP_004011838.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219371|gb|ADP70739.1| DNA-cytosine methyltransferase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 363

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            + DLFCG GG+        +    +     + +      ++ N     I  D+A++K +
Sbjct: 23  TVVDLFCGAGGLSHGF----HSEGFDIVAGIDTDETCRYAFEHNNDAPFIRRDVAQLKGR 78

Query: 63  DIPD------HDVLLAGFPCQPFS 80
           +I D      H VL+   PCQPFS
Sbjct: 79  EIEDLFVPGRHRVLVGCAPCQPFS 102


>gi|307193684|gb|EFN76367.1| DNA (cytosine-5)-methyltransferase 1 [Harpegnathos saltator]
          Length = 1460

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+   L +       E  ++ E    +   ++ N+PN  +F        
Sbjct: 936  LRTLDIFAGCGGLSDGLHEAGVA---ETLWAIEKEETAAYAFRLNYPNATVFSTDCNTLL 992

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD      Q  P   + ++L  G PCQ FS
Sbjct: 993  RKVMKGDRIDENGQKYPQKGEVELLCGGPPCQGFS 1027


>gi|317506240|ref|ZP_07964059.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316255486|gb|EFV14737.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 347

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G+GG    L     H  V      EI+P +  T +A   + ++  D+  +   D
Sbjct: 2  ILDLFSGVGGWLEGLGPGVPHVGV------EIDPDAAATSRA-AGHNVVQADVTLLDPSD 54

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
                + A  PCQ FS AG
Sbjct: 55 YSGIVGITASPPCQSFSVAG 74


>gi|331035537|gb|AEC53094.1| DNA-cytosine methyltransferase [Synechococcus phage S-CRM01]
          Length = 381

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           +  +   F G GG              +    +E    +  TY  N+P T+I   DI ++
Sbjct: 19  LFTVISTFAGGGGSSTGYRLA----GGKLLAINEFVEEARITYHQNYPETIILPDDIRQL 74

Query: 60  KTQDIPD--------HDVLLAGFPCQPFSQAG 83
             +D  D         D+L    PC  FS AG
Sbjct: 75  TGKDFLDKVGLKPGELDLLDGSPPCSAFSVAG 106


>gi|319443146|ref|ZP_07992302.1| DNA-cytosine methyltransferase [Corynebacterium variabile DSM
          44702]
          Length = 417

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
            F G  G+ L LE+T      E   + EI+    +T   N P+  +I  D+A++  + +
Sbjct: 11 SFFSGAMGLDLGLEET----GWEPSLAVEIDARFCETISRNKPDLDIINSDVAELTGEAL 66

Query: 65 ------PDHDVLLAGFPCQPFSQAG 83
                   D+++ G PCQ FS  G
Sbjct: 67 FARTGENQVDLMVGGPPCQSFSTGG 91


>gi|313676237|ref|YP_004054233.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
 gi|312942935|gb|ADR22125.1| DNA-cytosine methyltransferase [Marivirga tractuosa DSM 4126]
          Length = 448

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 40/122 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN---------------------------VECFFSSE 34
           L +  LF G GG+ L  E  F  +                                FS++
Sbjct: 35  LNVVSLFSGCGGMDLGFEGGFKVKKESVNEILNKDFIESFCANGYIKLKKTRFRTTFSND 94

Query: 35  INPYSVKTYQANF------PNTLIFGDIAKI------KTQDIPD-HDVLLAGFPCQPFSQ 81
           I   +   +   F      P       I  +           P+  DV+  GFPCQ FS 
Sbjct: 95  ILTEARNAWVHYFKKSQPNPEVFHTDSIVDLVKLHKSGVNVFPENVDVVTGGFPCQDFSV 154

Query: 82  AG 83
           +G
Sbjct: 155 SG 156


>gi|302534627|ref|ZP_07286969.1| predicted protein [Streptomyces sp. C]
 gi|302443522|gb|EFL15338.1| predicted protein [Streptomyces sp. C]
          Length = 194

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +L+I +L  G GG  L +            + +E  P         +P+    GDI +I 
Sbjct: 25  LLEILELCAGYGG--LGMAVA-PLVGGRIAYVAESAPGPSAVLAERYPDAPNLGDIREID 81

Query: 61  -TQDIPDHDVLLAGFPCQPFSQAG 83
            TQ +   DV+ AGFPCQ  S AG
Sbjct: 82  WTQLVGKVDVITAGFPCQDISIAG 105


>gi|14330659|emb|CAC41108.1| site-specific DNA-methyltransferase (cytosine-specific)
          [Klebsiella pneumoniae]
          Length = 375

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   + FCG GG+ L L+Q       +   + +IN  +V+TY  N  N     D + +  
Sbjct: 10 LTCIEGFCGAGGMSLGLKQA----GFDVRLAFDINENAVETYNKNIGNHCEKLDASIVSG 65

Query: 62 QDIPD-------HDVLLAGFPCQPFS 80
          + + +        D+   G PCQ FS
Sbjct: 66 KFLLEKAGIKTRLDLFSGGPPCQGFS 91


>gi|78189586|ref|YP_379924.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii
          CaD3]
 gi|78171785|gb|ABB28881.1| C-5 cytosine-specific DNA methylase [Chlorobium chlorochromatii
          CaD3]
          Length = 359

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCGIGG+   L+++     ++     +I+     +++ N     I  DI K++ +++
Sbjct: 10 IDLFCGIGGLTYGLKKS----GIQVKAGIDIDESCRYSFEENCGTKFINKDIQKLQKEEL 65

Query: 65 P------DHDVLLAGFPCQPFS 80
                 +  +L+   PCQPFS
Sbjct: 66 NSIYGNAEIKILVGCAPCQPFS 87


>gi|254671508|emb|CBA09095.1| site-specific DNA-methyltransferase [Neisseria meningitidis
          alpha153]
          Length = 258

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 16 LDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIPDH------D 68
          +  EQ       +   S E+     +TY+ NFP+  L+  D+  +  QD+ +       D
Sbjct: 1  MGFEQA----GFQQLLSVEMESDYCQTYRTNFPHHQLLQKDLTTLTEQDLINCLNGQAVD 56

Query: 69 VLLAGFPCQPFSQAG 83
          +++ G PCQ FS AG
Sbjct: 57 LIIGGPPCQGFSMAG 71


>gi|209543149|ref|YP_002275378.1| C-5 cytosine-specific DNA methylase [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530826|gb|ACI50763.1| C-5 cytosine-specific DNA methylase [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 484

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 2  LKITDLFCGI-GGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++ DLF G  GG  L L +           + EI P+    Y  N P+  ++ D+  + 
Sbjct: 17 FRVLDLFAGAAGGWTLGLHRA----GFVTVAACEIVPWRRVLYAENNPHVRLYDDVRTLT 72

Query: 61 TQDIPD-----HDVLLAGFPCQPFSQA 82
             +        D++    PCQ  S A
Sbjct: 73 AGRLVSDLGFLPDLIAGSPPCQDISSA 99


>gi|163855609|ref|YP_001629907.1| putative C-5 cytosine-specific DNA methylase [Bordetella petrii
          DSM 12804]
 gi|163259337|emb|CAP41637.1| putative C-5 cytosine-specific DNA methylase [Bordetella petrii]
          Length = 189

 Score = 71.7 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   +  GI      +   +        + SEI+P+       ++P+    GD+  I  
Sbjct: 6  LQYGSVCSGI----EAVSLAWKPLGWHPAWFSEIDPFPNAVLAHHYPDVPNLGDMTGIAD 61

Query: 62 QDI----PDHDVLLAGFPCQPFSQAG 83
          Q +    P  D+L+ G PCQ FS AG
Sbjct: 62 QILAGTAPAPDILVGGTPCQAFSVAG 87


>gi|189233760|ref|XP_001814230.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase
           [Tribolium castaneum]
          Length = 1187

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK  D+F G GG+                ++ E +  ++ T++ N     +F D   +  
Sbjct: 735 LKCLDVFAGCGGLSQGFHAAGVAN---TKWAIENDKPALDTFRHNNRTCHVFRDDCNVLL 791

Query: 62  QDI----------PDHDVLLAGFPCQPFS 80
           +++           + ++++ G PCQ FS
Sbjct: 792 RNVMSGKGGLPPKSEVEMIVGGPPCQGFS 820


>gi|325269501|ref|ZP_08136117.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988120|gb|EGC20087.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 388

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQDIP 65
           F GIG I    ++   + NVE  F+ +I+    K Y AN+         DI  +  +   
Sbjct: 39  FSGIGAIEHAFKRL--NLNVEIVFAGDIDANCKKAYFANYKISEEQWHTDIQNLDARPYK 96

Query: 66  -DHDVLLAGFPCQPFSQAG 83
              D+ + G PCQ FS  G
Sbjct: 97  GKVDLFVGGAPCQAFSIVG 115


>gi|157827940|ref|YP_001494182.1| site-specific DNA methylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165932629|ref|YP_001649418.1| hypothetical protein RrIowa_0090 [Rickettsia rickettsii str.
          Iowa]
 gi|157800421|gb|ABV75674.1| Site-specific DNA methylase [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|165907716|gb|ABY72012.1| hypothetical protein RrIowa_0090 [Rickettsia rickettsii str.
          Iowa]
          Length = 65

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 35 INPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          I+    + Y+ NF +   +GDI +I    IP HD+L AGFPCQ FS +G
Sbjct: 5  IDKDVQEAYKRNFGDKP-YGDIMEISETKIPKHDILCAGFPCQSFSISG 52


>gi|325685522|gb|EGD27614.1| modification methylase BbvI [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 380

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 14/97 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQT------FNHRNVECFFSSEINPYSVKTYQANFPN----- 49
          + +  +LF G GG     + +               +++E +P +V+TY+ N  N     
Sbjct: 2  IFRTAELFSGPGGGAYAAKTSHFVDDKGEEWGFSHAWANEYDPDTVETYKLNILNNPDAK 61

Query: 50 TLIFGDIAKIKTQD---IPDHDVLLAGFPCQPFSQAG 83
          T+   D+ K    D   + + D L+ GFPC  +S  G
Sbjct: 62 TVYCEDVRKFNLDDDEKLGNIDALIFGFPCNDYSVVG 98


>gi|323949009|gb|EGB44903.1| DNA adenine methylase [Escherichia coli H252]
          Length = 762

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   +  GI          +    +   + +EI P+        +P+    GD+ K+  
Sbjct: 7  LRYGSVCSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAK 62

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
          +    +I   DVL+ G PCQ FS AG
Sbjct: 63 KVLAGEIESPDVLVGGTPCQAFSIAG 88


>gi|254901064|ref|ZP_05260988.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
          J0161]
          Length = 320

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENLG--VDIKSLDYVEILPFAVQAYNNIFSNDYVAQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|293596744|ref|ZP_05263998.2| DNA-methyltransferase [Listeria monocytogenes J2818]
 gi|293592003|gb|EFG00338.1| DNA-methyltransferase [Listeria monocytogenes J2818]
          Length = 327

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 8  MVQILELFGGIGAPRKALENLG--VDIKSLDYVEILPFAVQAYNNIFSNDYVAQDVTKWN 65

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 66 MS----VDLLIHGSPCQDWSKNG 84


>gi|83955480|ref|ZP_00964111.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. NAS-14.1]
 gi|83840124|gb|EAP79299.1| C-5 cytosine-specific DNA methylase [Sulfitobacter sp. NAS-14.1]
          Length = 384

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
             + FCG G +R  L+        +C  +++I+    K Y  N+    +  GDIA +  
Sbjct: 10 TYAEFFCGGGMVRAALQ-----DRWDCVLANDIDAMKCKVYAQNWGQAALHQGDIAAMPD 64

Query: 62 QDI-PDHDVLLAGFPCQPFSQAG 83
            +    D+  A  PCQ FS AG
Sbjct: 65 DLLARQIDMYWASSPCQDFSLAG 87


>gi|260429702|ref|ZP_05783678.1| site-specific DNA methylase [Citreicella sp. SE45]
 gi|260419185|gb|EEX12439.1| site-specific DNA methylase [Citreicella sp. SE45]
          Length = 330

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDIAKI 59
             L  G GG+ L L               E + Y+     A   +       ++ D+   
Sbjct: 23  LSLCSGAGGLDLGLHLAL--PGYRTVGHVERDAYAAAILVARMEDAALDRAPVWDDVGTF 80

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
             +      D++ AG+PCQPFS AG
Sbjct: 81  DGRAWRGAVDIVTAGYPCQPFSVAG 105


>gi|254456632|ref|ZP_05070061.1| modification methylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083634|gb|EDZ61060.1| modification methylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 380

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--------NFPNTLIF 53
          +K  DLF G GG+            ++     + + +   T           N       
Sbjct: 3  IKFIDLFSGCGGLTEAFLNNKKFSPIKII---DNDKFCYDTTIHRLKKLKFKNPEKIAQL 59

Query: 54 GDIAKIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
           DI+    + I D      D+++ G PCQ +S AG
Sbjct: 60 KDIS--SNKTINDFKNIKSDIVIGGPPCQAYSVAG 92


>gi|311977244|gb|ADQ20500.1| M1.BfuAI [Lysinibacillus fusiformis]
          Length = 357

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          L   DLF         L Q     +    FS EI+  +V+T+  NFP+  +F  DI  + 
Sbjct: 3  LNAVDLFS----GAGGLLQGLLQTDYNVLFSVEIDKAAVRTHLENFPDIPVFDDDIRNLT 58

Query: 61 TQDI------PDHDVLLAGFPCQPFSQAG 83
           + +       + D+++ G PCQ FS  G
Sbjct: 59 KEKMVELTKNSEIDLVVGGPPCQGFSVFG 87


>gi|163941367|ref|YP_001646251.1| C-5 cytosine-specific DNA methylase [Bacillus weihenstephanensis
          KBAB4]
 gi|163863564|gb|ABY44623.1| C-5 cytosine-specific DNA methylase [Bacillus weihenstephanensis
          KBAB4]
          Length = 251

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DL  GI GI +          ++     EI  ++    + N+PN  IF D+ K+  
Sbjct: 1  MKMLDLCSGIAGISM----AAGWAGIDTAAFCEIEEFNQSVLRKNYPNIPIFPDLYKLTK 56

Query: 62 QDIPD--HD-----VLLAGFPCQPFSQAG 83
          Q + D   D     V+ AG+PCQ  S  G
Sbjct: 57 QSLIDGGVDVDSIGVISAGYPCQGESLVG 85


>gi|119511510|ref|ZP_01630619.1| type II DNA modification enzyme (methyltransferase) [Nodularia
           spumigena CCY9414]
 gi|119463821|gb|EAW44749.1| type II DNA modification enzyme (methyltransferase) [Nodularia
           spumigena CCY9414]
          Length = 371

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DLF G GG+ L  E T      +     EI   S  TY+ N        ++    +  
Sbjct: 27  VIDLFGGCGGLALGFEAT----GFQTIGY-EILADSRATYEHNLLGVCNQVNLTPF-SNL 80

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           +    V++ G PCQPFS +G
Sbjct: 81  VEGAAVIIGGPPCQPFSVSG 100


>gi|332138119|pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
 gi|332138120|pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adohcy
 gi|332138121|pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adomet
          Length = 1330

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 852 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 907

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 908 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 943


>gi|315583649|pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
           State
          Length = 873

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 413 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 468

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 469 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 504


>gi|315583643|pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
 gi|315583644|pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
           Dna
          Length = 954

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 494 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 549

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 550 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 585


>gi|313661497|ref|NP_001186361.1| DNA (cytosine-5)-methyltransferase 1 isoform 3 [Mus musculus]
          Length = 1501

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1023 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1078

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1079 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1114


>gi|327180734|ref|NP_034196.5| DNA (cytosine-5)-methyltransferase 1 isoform 2 [Mus musculus]
          Length = 1619

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1141 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1196

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1197 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1232


>gi|148693195|gb|EDL25142.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_d [Mus musculus]
          Length = 1619

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1141 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1196

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1197 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1232


>gi|148693196|gb|EDL25143.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_e [Mus musculus]
          Length = 1604

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1126 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1181

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1182 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1217


>gi|148693197|gb|EDL25144.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_f [Mus musculus]
          Length = 1638

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1160 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1215

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1216 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1251


>gi|148693194|gb|EDL25141.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_c [Mus musculus]
          Length = 1683

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1205 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1260

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1261 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1296


>gi|148693193|gb|EDL25140.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_b [Mus musculus]
          Length = 1645

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1167 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1222

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1223 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1258


>gi|31419356|gb|AAH53047.1| Dnmt1 protein [Mus musculus]
          Length = 1627

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1149 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1204

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1205 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1240


>gi|2689716|gb|AAC40061.1| DNA (cytosine-5)-methyltransferase [Mus musculus]
          Length = 1502

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1024 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1079

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1080 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1115


>gi|313661499|ref|NP_001186362.1| DNA (cytosine-5)-methyltransferase 1 isoform 4 [Mus musculus]
 gi|7339827|gb|AAF60965.1| DNA methyltransferase [Mus musculus]
 gi|9719249|gb|AAF97695.1| DNA (cytosine-5)-methyltransferase [Mus musculus]
 gi|148693192|gb|EDL25139.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_a [Mus musculus]
 gi|148693198|gb|EDL25145.1| DNA methyltransferase (cytosine-5) 1, isoform CRA_a [Mus musculus]
          Length = 1502

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1024 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1079

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1080 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1115


>gi|74151181|dbj|BAE27713.1| unnamed protein product [Mus musculus]
          Length = 1619

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1141 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1196

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1197 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1232


>gi|1765919|emb|CAA32910.1| DNA methyltransferase 1 [Mus musculus]
          Length = 1620

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1142 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1197

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1198 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1233


>gi|327180732|ref|NP_001186360.2| DNA (cytosine-5)-methyltransferase 1 isoform 1 [Mus musculus]
 gi|20141336|sp|P13864|DNMT1_MOUSE RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            Short=Met-1; AltName: Full=DNA methyltransferase MmuI;
            Short=DNA MTase MmuI; Short=M.MmuI; AltName: Full=MCMT
 gi|6625687|gb|AAF19352.1| DNA methyltransferase [Mus musculus]
 gi|37574019|gb|AAH48148.2| DNA methyltransferase (cytosine-5) 1 [Mus musculus]
          Length = 1620

 Score = 71.3 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1142 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1197

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++     Q +P   D ++L  G PCQ FS
Sbjct: 1198 LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1233


>gi|229820628|ref|YP_002882154.1| C-5 cytosine-specific DNA methylase [Beutenbergia cavernae DSM
          12333]
 gi|229566541|gb|ACQ80392.1| C-5 cytosine-specific DNA methylase [Beutenbergia cavernae DSM
          12333]
          Length = 316

 Score = 71.3 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF G GG+ L +E  F+    E  + SE+N    + +  ++P+    GDI  +  
Sbjct: 12 LRVGPLFSGRGGLDLAVEHVFSA---ETIWFSELNETVARIFGRHWPDAPNLGDITAMDR 68

Query: 62 QDIPDHDVLLAGFPCQ 77
          +     D+L   FPCQ
Sbjct: 69 RAAAPVDILTGVFPCQ 84


>gi|160883583|ref|ZP_02064586.1| hypothetical protein BACOVA_01555 [Bacteroides ovatus ATCC 8483]
 gi|156110996|gb|EDO12741.1| hypothetical protein BACOVA_01555 [Bacteroides ovatus ATCC 8483]
          Length = 417

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 30/103 (29%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----------FPNTLI 52
           + DLF G GG+ L L +          F+ E    + +T + N           +P  L 
Sbjct: 9   VIDLFSGCGGLSLGLHKA----GWRGLFAVEKCTDAFETLKYNLIDNKTDPHFQWPKWLP 64

Query: 53  FGDIAKIKTQDI------------PDHDVLLAGFPCQPFSQAG 83
              I   +   +               D++  G PCQ FS AG
Sbjct: 65  ---IKNWEIDTLLENYSFQLSNLRNKIDLVAGGPPCQGFSMAG 104


>gi|289192310|ref|YP_003458251.1| DNA-cytosine methyltransferase [Methanocaldococcus sp. FS406-22]
 gi|288938760|gb|ADC69515.1| DNA-cytosine methyltransferase [Methanocaldococcus sp. FS406-22]
          Length = 363

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 40/140 (28%), Gaps = 62/140 (44%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------- 51
           MLK  DLFCG GG      +       E   + E+N  +  +Y  NF   +         
Sbjct: 1   MLKFIDLFCGCGGFSRGFVE----EGFEPLVAIELNEDAAFSYALNFNGKIYEKIRPGEF 56

Query: 52  -------------------------------------------IFGDIAKIKTQDIPDH- 67
                                                      I  DI +I   +I    
Sbjct: 57  KLRELKGYVGIYSFKFPFEEEDIKWLKNLGTLNEKTEKLSPVVINDDIREIHALEIEKFC 116

Query: 68  -----DVLLAGFPCQPFSQA 82
                DV++ G PC+ ++ A
Sbjct: 117 KNKKVDVIIGGPPCEGYTGA 136


>gi|330891417|gb|EGH24078.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 201

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          +    ++  G GG  L LE        E     EI P +  T + N P+  +   D+ + 
Sbjct: 10 LFTSLEMCAGAGGQALGLEMAG--FGHEVL--VEIEPPACATLRLNRPDWNVQEQDLRQF 65

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D++  G PC PFS+AG
Sbjct: 66 NGLPYFGVDLVAGGVPCPPFSKAG 89


>gi|237704019|ref|ZP_04534500.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|20068985|gb|AAM09639.1|AF458982_2 m5 cytosine DNA methyltransferase [Escherichia coli]
 gi|226901931|gb|EEH88190.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|281181427|dbj|BAI57757.1| methyltransferase [Escherichia coli SE15]
 gi|315286888|gb|EFU46305.1| C-5 cytosine-specific DNA methylase [Escherichia coli MS 110-3]
 gi|323955407|gb|EGB51176.1| C-5 cytosine-specific DNA methylase [Escherichia coli H263]
          Length = 396

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT-Q 62
             DLF G GG+ L  +            +++I    ++TY  N    ++ G I+  +T  
Sbjct: 151 YIDLFSGAGGLGLGFKWA----GWTPLLANDIEEKYLQTYSNNVHKEVLCGSISDNETFS 206

Query: 63  DIPD---------HD---VLLAGFPCQPFSQAG 83
            I D          D    +L G PCQ FS AG
Sbjct: 207 KIADKISGFKKLYFDKQLWILGGPPCQGFSTAG 239


>gi|16077673|ref|NP_388487.1| DNA-methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308442|ref|ZP_03590289.1| hypothetical protein Bsubs1_03403 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312764|ref|ZP_03594569.1| hypothetical protein BsubsN3_03379 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317687|ref|ZP_03598981.1| hypothetical protein BsubsJ_03338 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321963|ref|ZP_03603257.1| hypothetical protein BsubsS_03409 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81669163|sp|O34939|YDIO_BACSU RecName: Full=Probable BsuMI modification methylase subunit ydiO;
           Short=M1.BsuMI; AltName: Full=Cytosine-specific
           methyltransferase M1.BsuMI
 gi|2521997|dbj|BAA22750.1| ydiO [Bacillus subtilis]
 gi|2632919|emb|CAB12425.1| DNA-methyltransferase (cytosine-specific) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 427

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 18/97 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANF-PNTLIFGDIAK 58
           + I DLF G GG+ L + +      +     F+ ++N  ++  Y+ NF P+  +   I K
Sbjct: 84  INIADLFSGCGGLSLGVWEACRALGINPRFSFACDLNEAALSVYEKNFSPDFSLNESIEK 143

Query: 59  -----------IKTQDIPD----HDVLLAGFPCQPFS 80
                      ++ Q I D     D +LAG PCQ  S
Sbjct: 144 HINGELGAPLTVEEQRIKDKVKKIDFILAGPPCQGHS 180


>gi|320009547|gb|ADW04397.1| DNA-cytosine methyltransferase [Streptomyces flavogriseus ATCC
          33331]
          Length = 431

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L++ ++  G GG  L LE+       E   + E++P + +T + N P   +  GD+A   
Sbjct: 4  LQVAEICAGAGGQALGLERA----GFEHAVAVELDPTAAQTLKRNMPGCDVRTGDVADRS 59

Query: 61 TQDIPDH-------DVLLAGFPCQPFSQAG 83
            D           D++  G PC PF+ AG
Sbjct: 60 IWDPEQFCAEHGTPDLIAGGVPCPPFTIAG 89


>gi|15966901|ref|NP_387254.1| putative cytosine-specific methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|15076174|emb|CAC47727.1| Putative cytosine-specific methyltransferase [Sinorhizobium
           meliloti 1021]
          Length = 440

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-------- 55
             DLF G GG+ L L Q          F+ E +  + +T+  NF +     D        
Sbjct: 6   FADLFSGCGGLSLGLTQAGLKGQ----FAIERDAMAFRTFATNFIDARGASDRFEWPAWL 61

Query: 56  ------IAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
                 I ++      +        DVL  G PCQ FS AG
Sbjct: 62  ERRAWGIEELLEYHGKELLGLRGTIDVLAGGPPCQGFSFAG 102


>gi|321469202|gb|EFX80183.1| hypothetical protein DAPPUDRAFT_346987 [Daphnia pulex]
          Length = 1400

 Score = 70.9 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 18/94 (19%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA---- 57
            LK  D+F G GG+   L Q+      + +++ E  P + + ++ N P+  +F D      
Sbjct: 926  LKTLDIFAGCGGLSEGLHQSGVA---KTYWAIECEPTAAQAFRLNNPDAAVFTDDCNTIL 982

Query: 58   --------KIKTQDIPDHD---VLLAGFPCQPFS 80
                    +   Q +P  D   +L  G PCQ FS
Sbjct: 983  KMAIDGQLEQNGQVLPPKDGVELLCGGPPCQGFS 1016


>gi|196048067|ref|ZP_03115245.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
 gi|196021323|gb|EDX60052.1| DNA-cytosine methyltransferase [Bacillus cereus 03BB108]
          Length = 427

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPDHD-----VLL 71
          L+  F+ +      + EIN  + KTY+ N P+T+++  DI  +   +I         +LL
Sbjct: 18 LDTGFSLQGFNLKLAIEINSDACKTYKVNHPDTIVWNRDIKTVTGDEILSITKNNPIILL 77

Query: 72 AGFPCQPFSQ 81
           G PCQ FS 
Sbjct: 78 GGSPCQSFSI 87


>gi|182436696|ref|YP_001824415.1| hypothetical protein SGR_2903 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178465212|dbj|BAG19732.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 359

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   L  G GG+   L              +E +PY+   + A+ P     GDI +   
Sbjct: 15 LRAVALCAGYGGLETAL---GAGIGAVPVAYAENDPYAAAVFAAHHPGVPNLGDITRADW 71

Query: 62 QDIPDH---DVLLAGFPCQPFSQAG 83
          + + D    +++ AGFPC+  S AG
Sbjct: 72 ERVRDLYRPEIVGAGFPCRNISNAG 96


>gi|331085772|ref|ZP_08334855.1| hypothetical protein HMPREF0987_01158 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406695|gb|EGG86200.1| hypothetical protein HMPREF0987_01158 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 411

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 33/112 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK-IK 60
           +K  DLF G GG+    EQ+      +   + E      K  +    +   + D  + + 
Sbjct: 6   IKSIDLFAGCGGLMDGFEQSGY---YDTVAAVEWEKAPCKNLENRLKSKWEYKDAEQRVL 62

Query: 61  TQDI-------------PD----------------HDVLLAGFPCQPFSQAG 83
             DI             PD                 DV++ G PCQ +S AG
Sbjct: 63  RFDIQRTEELFSGWVNDPDYGSSVGLDKLINNVGGIDVIIGGPPCQAYSIAG 114


>gi|83718377|ref|YP_439560.1| DNA methyltransferase [Burkholderia thailandensis E264]
 gi|83652202|gb|ABC36266.1| DNA methyltransferase [Burkholderia thailandensis E264]
          Length = 535

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 2   LKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           L++    +  GI          ++       + SEI  +     + ++P     GD+ + 
Sbjct: 59  LRMIYGSVCSGI----EAATVAWHPLGWRPAWFSEIERFPCAVLRHHYPTVPNLGDMKRF 114

Query: 60  KTQDIPDH--DVLLAGFPCQPFSQAG 83
           K  + PD   D+L+ G PCQ FS AG
Sbjct: 115 K--EWPDAAIDLLVGGTPCQSFSVAG 138


>gi|302187943|ref|ZP_07264616.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
          syringae pv. syringae 642]
          Length = 307

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          M    DLF G+GG      +      V+  +++   P +V+ + AN P+ +    D+ + 
Sbjct: 1  MHTAIDLFAGLGGWSSGARRA----GVKVLWAANHWPVAVEWHSANHPDAIHVCQDLHQA 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
              +P HD++LA   CQ  S+A
Sbjct: 57 DWSTVPAHDIMLASPCCQGHSKA 79


>gi|155370846|ref|YP_001426380.1| hypothetical protein FR483_N748L [Paramecium bursaria Chlorella
          virus FR483]
 gi|155124166|gb|ABT16033.1| hypothetical protein FR483_N748L [Paramecium bursaria Chlorella
          virus FR483]
          Length = 349

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   +LF G+GGI   L               E    + +  +    N  + GDI K   
Sbjct: 1  MNALELFAGVGGITHGLRGYVTPHAF-----VEYETEASEFLK--HKNKPVHGDITKFDA 53

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
           +     D++ AG+PC  FS AG
Sbjct: 54 SEYKGIVDIVTAGWPCTGFSTAG 76


>gi|330882498|gb|EGH16647.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 335

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 1  MLKITDL--FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
          M + T L    G GG  L LE        E     EI P +  T + N P   +   D+ 
Sbjct: 18 MSRFTSLEMCAGAGGQALGLEMAG--FGHEAL--VEIEPPACATLRLNRPEWNVKEEDLR 73

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +         D++  G PC PFS+AG
Sbjct: 74 QFNGSPFFGVDLVAGGVPCPPFSKAG 99


>gi|15669386|ref|NP_248195.1| type II R/M system modification methyltransferase
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2500154|sp|Q58600|MT52_METJA RecName: Full=Probable modification methylase MJ1200; AltName:
           Full=Cytosine-specific methyltransferase MJ1200;
           AltName: Full=M.MjaVIIP
 gi|1591829|gb|AAB99203.1| modification methylase, type II R/M system [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 366

 Score = 70.9 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 40/140 (28%), Gaps = 62/140 (44%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----------- 49
           MLK  DLFCG GG      +       E   + E+N  +  +Y  NF             
Sbjct: 4   MLKFIDLFCGCGGFSRGFVE----EGFEPLVAIELNEDAAFSYALNFNGQIYEKIRPGEF 59

Query: 50  -----------------------------------------TLIFGDIAKIKTQDIPDH- 67
                                                     +I  DI +I   +I    
Sbjct: 60  KLKELKGYVGIYPFKFPFEEEDIKWLKRLGTLNEKTKKLSPVVINDDIREIHAIEIEKFI 119

Query: 68  -----DVLLAGFPCQPFSQA 82
                DV++ G PC+ ++ A
Sbjct: 120 KNKKVDVIIGGPPCEGYTGA 139


>gi|330989663|gb|EGH87766.1| cytosine-specific methyltransferase [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 512

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L+   +  GI          ++   +E  + +EI P+       ++P T   GD+ K+  
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 61 ---TQDIPDHDVLLAGFPCQPFSQAG 83
                I   DVL+ G PCQ FS AG
Sbjct: 66 LALAGKIKAPDVLVGGTPCQAFSVAG 91


>gi|213967437|ref|ZP_03395585.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
 gi|213927738|gb|EEB61285.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          T1]
          Length = 498

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +EI P+       ++P T   GD+ K   
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIDAPDVLVGGTPCQAFSVAG 91


>gi|219847398|ref|YP_002461831.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219541657|gb|ACL23395.1| DNA-cytosine methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 392

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDIAK 58
          L + + F GIG +R+ L+        +  F+++I+    + Y+A FP+     +  DI  
Sbjct: 8  LTVAEYFAGIGLVRMGLQS----YGWKVIFANDISKKKFEMYKAFFPDAEAHYVTADIFD 63

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I    +P   +    FPC   S AG
Sbjct: 64 IDPTVVPLTTLATCSFPCIDLSLAG 88


>gi|332310450|gb|EGJ23545.1| DNA-methyltransferase (Dcm) [Listeria monocytogenes str. Scott A]
          Length = 325

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENLG--VDIKSLDYVEILPFAVQAYNNIFSNDYVPQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|254933776|ref|ZP_05267135.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
 gi|293585336|gb|EFF97368.1| DNA-cytosine methyltransferase [Listeria monocytogenes HPB2262]
          Length = 325

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  LE      +++     EI P++V+ Y   F N  +  D+ K  
Sbjct: 1  MVQILELFGGIGAPRKALENLG--VDIKSLDYVEILPFAVQAYNNIFSNDYVPQDVTKWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D+L+ G PCQ +S+ G
Sbjct: 59 MS----VDLLIHGSPCQDWSKNG 77


>gi|302793280|ref|XP_002978405.1| hypothetical protein SELMODRAFT_108655 [Selaginella moellendorffii]
 gi|300153754|gb|EFJ20391.1| hypothetical protein SELMODRAFT_108655 [Selaginella moellendorffii]
          Length = 336

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
           +++  LF GIGGI + LE+           S E N    +  ++ +         ++ GD
Sbjct: 209 IRVLSLFSGIGGIEVALEKLGIPIKF--LVSVETNADCHRVLRSWWHRTRQRGTHIVLGD 266

Query: 56  IAKIKTQDIPD--------HDVLLAGFPCQPFS 80
           + ++  + I +         D++  G PC  FS
Sbjct: 267 VTELSRERIEELAARAGGGFDLVAGGSPCNNFS 299


>gi|39995337|ref|NP_951288.1| type II DNA modification methyltransferase [Geobacter
          sulfurreducens PCA]
 gi|39982099|gb|AAR33561.1| type II DNA modification methyltransferase, putative [Geobacter
          sulfurreducens PCA]
          Length = 305

 Score = 70.6 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          ++  +LFCGIGG    +E T     V    + + +  ++ TY+ NFP       D+ ++ 
Sbjct: 1  MRAVELFCGIGGFAAAVEGT----GVRVVAAMDQDEAALATYRLNFPGHGARKVDLERVS 56

Query: 61 TQDI--PDHDVLLAGFPCQPFSQAG 83
            ++     D+     PCQP+ + G
Sbjct: 57 AWELTAGGVDLWWLSPPCQPYCERG 81


>gi|294084926|ref|YP_003551686.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664501|gb|ADE39602.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 393

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           +  +   F G GG        +     +   ++E  P +V+TY+ N+P+T++   DI KI
Sbjct: 27  LFTVVSTFAGGGGSSTG----YKLAGGKVLAANEFVPEAVETYKQNYPDTIVDSSDIRKI 82

Query: 60  KTQ--------------DIPDHDVLLAGFPCQPFSQA 82
                            +  + D+L    PC  FS+A
Sbjct: 83  TGSKKEGVLSWFRSFGVEQGELDILDGSPPCATFSKA 119


>gi|297621903|ref|YP_003710040.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
 gi|297377204|gb|ADI39034.1| C-5 cytosine-specific DNA methylase [Waddlia chondrophila WSU
           86-1044]
          Length = 410

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 33  SEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +EI+  S  T + N P+  +I GDI  I  +     D L  GFPCQ FS AG
Sbjct: 104 NEIDKSSCMTLRKNRPSWNVIEGDIKSIDFRQFKGIDFLSGGFPCQAFSYAG 155


>gi|326428358|gb|EGD73928.1| hypothetical protein PTSG_05624 [Salpingoeca sp. ATCC 50818]
          Length = 512

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
           L++ + + GIGG+   L+            + +IN  + K Y+ NFP T ++   I  I 
Sbjct: 18  LRVLEFYSGIGGMHAALKVA--DPTARVLRAFDINDTANKVYRHNFPETPVWQRLIESIP 75

Query: 61  TQDIP---DHDVLLAGFPCQPFSQAG 83
            +        D+ L   PCQPF++ G
Sbjct: 76  RERFEGKLQADMYLMSPPCQPFTRTG 101


>gi|315917403|ref|ZP_07913643.1| type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691278|gb|EFS28113.1| type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
          Length = 320

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI +LF GIG IR    +       +     EI+   VK+Y A +        I     
Sbjct: 7  IKIIELFGGIGAIRKAFIR--QKIPHQVIDYVEIDKNCVKSYNALYNTDFKPKSILDFHP 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D+L+ G PCQ FS++G
Sbjct: 65 PD-ERIDLLMHGSPCQDFSRSG 85


>gi|119716511|ref|YP_923476.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
 gi|119537172|gb|ABL81789.1| DNA-cytosine methyltransferase [Nocardioides sp. JS614]
          Length = 399

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNT--------- 50
            +LF G GG+ + L +            +E+N  +  T +AN      P+          
Sbjct: 18  IELFSGGGGLAMALHEA----GFRHLLLNELNKRACATLRANNAVDYLPDETPPATLADP 73

Query: 51  --LIFGDIAKIKTQDI-PDHDVLLAGFPCQPFSQAG 83
             LI G I ++       D DV+  G PCQPFS  G
Sbjct: 74  WPLIEGGIGEVDFTPFLGDVDVVAGGVPCQPFSLGG 109


>gi|306821027|ref|ZP_07454646.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
 gi|304550968|gb|EFM38940.1| possible DNA (cytosine-5-)-methyltransferase [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
          Length = 317

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           + +LF GIG +R  L +       +     EI+   VK+Y A +       DI K    
Sbjct: 10 NVLELFGGIGALRKALIR--QKIPHKVVDYVEIDKNCVKSYNALYNADFTPKDIVKYHAP 67

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+L+ G PCQ FS+ G
Sbjct: 68 N-ERVDLLMHGSPCQDFSRIG 87


>gi|17232307|ref|NP_488855.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17133952|dbj|BAB76514.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 414

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPN-TLIFGDI----AKIKTQDIPDH--DVLLAGFPCQ 77
                 S EI+ ++  T + N P+ T+I  DI     +   ++I +   D+++ G PCQ
Sbjct: 26 AGFSVPLSVEIDTWACDTLRYNRPDSTVIQNDIGNFSTENDVKNICNFKPDIIIGGPPCQ 85

Query: 78 PFSQAG 83
           FS AG
Sbjct: 86 GFSIAG 91


>gi|281420885|ref|ZP_06251884.1| modification methylase DdeI [Prevotella copri DSM 18205]
 gi|281405177|gb|EFB35857.1| modification methylase DdeI [Prevotella copri DSM 18205]
          Length = 624

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 24/101 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTF---NHRNVECFFSSEINPYSVKTYQANF------PNTLI 52
           +   DLF G GG      Q +    + N     +S+IN     T++  +          +
Sbjct: 14  ITYLDLFAGAGGFSEGFMQAYTDDKYYNFR--LASDINENCELTHRVRYNKMLGLDTKFM 71

Query: 53  FGDI----------AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             DI           +I  Q+I   DV+  G  CQ FS AG
Sbjct: 72  CQDIMEDSFLPNLLKEIGNQEI---DVVTGGPSCQSFSLAG 109


>gi|284054995|ref|ZP_06385205.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 74

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
             DLF G GG+   LE        EC    + +  +++T+Q N P    I GD+ +I T
Sbjct: 8  TFIDLFSGAGGMSCGLEMA----GFECLLGVDFDKSAIQTFQNNHPQAETICGDLREIST 63

Query: 62 QDIPD 66
          + I +
Sbjct: 64 EQIRE 68


>gi|260890220|ref|ZP_05901483.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
 gi|260859840|gb|EEX74340.1| modification methylase EcoRII [Leptotrichia hofstadii F0254]
          Length = 293

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 37 PYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + KT+  N  + L   DI  +K+ D+PD DV++ GFPCQ FS AG
Sbjct: 5  KNAAKTFLKNNDSKLAVDDIHNVKSTDVPDTDVIVGGFPCQAFSIAG 51


>gi|328955052|ref|YP_004372385.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
 gi|328455376|gb|AEB06570.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
          Length = 353

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDI 64
          + F G       L            ++++I+      Y+AN  P+ L  GDI+++   D+
Sbjct: 10 EFFAG-----SGLVGCGLAPWFRSVWANDISERKAAVYRANLDPSVLHVGDISRVSGADL 64

Query: 65 PDHDVLLAGFPCQPFSQAG 83
          P   +  A FPCQ  S AG
Sbjct: 65 PAASLSWASFPCQDLSLAG 83


>gi|72091983|ref|XP_780273.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase isoform 1
            [Strongylocentrotus purpuratus]
 gi|115972575|ref|XP_001178953.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase isoform 2
            [Strongylocentrotus purpuratus]
          Length = 1618

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            LK  D+F G GG+     Q       E  ++ E    + + ++ N P + +F        
Sbjct: 1137 LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAFRLNNPGSTVFSDDCNELL 1193

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD      Q +P   D ++L  G PCQ FS
Sbjct: 1194 RLVMQGDKTSRTGQKLPQKGDVELLCGGPPCQGFS 1228


>gi|115972577|ref|XP_001178888.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase isoform 1
            [Strongylocentrotus purpuratus]
          Length = 1470

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            LK  D+F G GG+     Q       E  ++ E    + + ++ N P + +F        
Sbjct: 989  LKCLDVFAGCGGLSEGFHQAGI---CESSWAIEKEEPAAQAFRLNNPGSTVFSDDCNELL 1045

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 GD      Q +P   D ++L  G PCQ FS
Sbjct: 1046 RLVMQGDKTSRTGQKLPQKGDVELLCGGPPCQGFS 1080


>gi|302559403|ref|ZP_07311745.1| modification methylase NaeI [Streptomyces griseoflavus Tu4000]
 gi|302477021|gb|EFL40114.1| modification methylase NaeI [Streptomyces griseoflavus Tu4000]
          Length = 429

 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK---I 59
          + ++  G GG  L LE+       E   + E++  +  T + N P   ++ GD+A     
Sbjct: 6  VVEICAGAGGQALGLERA----GFEHALAVELDANAAATLRRNRPAWHVVEGDVADPGTW 61

Query: 60 KTQDIPDH-----DVLLAGFPCQPFSQAG 83
            +D         D+L  G PC PF+ AG
Sbjct: 62 TPEDYRTVNGEQLDLLAGGVPCPPFTIAG 90


>gi|153870986|ref|ZP_02000267.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152072545|gb|EDN69730.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 350

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           ++I   F G GG+ +  EQ  +     +  FS++I  Y  +T   N      +  DI ++
Sbjct: 114 IEIASYFTGAGGLDIGFEQASDDIIQFKTVFSTDIESYVEQTILTNRAEWDFLRADIREL 173

Query: 60  KTQDIP-----DHDVLLAGFPCQPFSQAG 83
             + +         +++ G PCQPFS AG
Sbjct: 174 SPEIVRRKMGKKPYIIIGGPPCQPFSVAG 202


>gi|57242037|ref|ZP_00369977.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
 gi|57017229|gb|EAL54010.1| cytosine specific DNA methyltransferase (DDEM) [Campylobacter
          upsaliensis RM3195]
          Length = 125

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----DIA 57
           + + F G GG  L   Q       +  ++++ +  ++KT + N    L        DI 
Sbjct: 4  NVVEFFVGAGGSHLGFMQ----EGFKTLYANDFDSNALKTLEHNNKKHLQNAILDSTDIT 59

Query: 58 KIKTQDIPD-----HDVLLAGFPCQPFSQAG 83
          +I  +++        DV+     C+ FS AG
Sbjct: 60 QISPKELKKKLDSSVDVMFGDIVCKGFSLAG 90


>gi|320540918|ref|ZP_08040419.1| putative site-specific DNA methylase [Serratia symbiotica str.
           Tucson]
 gi|320029019|gb|EFW11197.1| putative site-specific DNA methylase [Serratia symbiotica str.
           Tucson]
          Length = 223

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKT 61
             + F G G  R  L         +C F+++ +P     Y++N+     L+  DI  I +
Sbjct: 43  FYEFFAGGGMARAGL-----GAQWDCLFANDFSPMKGHAYRSNWSGGTDLLVEDINNITS 97

Query: 62  QDIP-DHDVLLAGFPCQPFSQAG 83
             +P   D++ A FPCQ  S AG
Sbjct: 98  AQLPAQADLVWASFPCQDLSLAG 120


>gi|302058959|ref|ZP_07250500.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
          Length = 498

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +EI P+       ++P T   GD+ K   
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIDAPDVLVGGTPCQAFSVAG 91


>gi|257466246|ref|ZP_05630557.1| Type II restriction-modification system methylation subunit
          [Fusobacterium gonidiaformans ATCC 25563]
          Length = 327

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI +LF GIG IR    +       +     EI+   VK+Y A +        I     
Sbjct: 14 IKIIELFGGIGAIRKAFIR--QKIPHQVIDYVEIDKNCVKSYNALYNTDFKPKSILDFHP 71

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D+L+ G PCQ FS++G
Sbjct: 72 PD-ERIDLLMHGSPCQDFSRSG 92


>gi|323650454|gb|ADX97305.1| M.KasI [Kluyvera ascorbata]
          Length = 388

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
          M    + F G G  R  L       +  C F+++ +      YQ N+    +F GD+  +
Sbjct: 1  MKTFYEFFAGSGMARAGL-----GDSWTCVFANDFDHKKGVVYQQNWGEGDLFVGDVKTV 55

Query: 60 KTQDI-PDHDVLLAGFPCQPFSQAG 83
            + +  + +++ A FPCQ  S AG
Sbjct: 56 TQEQLSKNANLVWASFPCQDLSLAG 80


>gi|294678263|ref|YP_003578878.1| cytosine-specific DNA-methyltransferase [Rhodobacter capsulatus SB
           1003]
 gi|294477083|gb|ADE86471.1| site-specific DNA-methyltransferase (cytosine-specific)
           [Rhodobacter capsulatus SB 1003]
          Length = 316

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDIAKI 59
             L  G GG+ L L               E   ++  T  A   +       ++ D+A  
Sbjct: 23  LSLCSGAGGLDLGLTIAI--PGYRAVGHVERETFAAATLVARMEDASLDRAPVWDDVATF 80

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
             +      D++ AG+PCQPFS AG
Sbjct: 81  DGRPWRGAVDIVTAGYPCQPFSVAG 105


>gi|15894505|ref|NP_347854.1| DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum ATCC 824]
 gi|15024146|gb|AAK79194.1|AE007635_8 DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum ATCC 824]
 gi|325508636|gb|ADZ20272.1| DNA-methyltransferase (cytosine-specific) [Clostridium
          acetobutylicum EA 2018]
          Length = 314

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++K  +LF GIG  R   +      +++     EI+P  VKTY   F   L++     I 
Sbjct: 6  IIKTLELFGGIGAPRKAFKNIG--IDIKAIDYVEIDPKPVKTYNEMFKKDLMYKTQNVIG 63

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
              P  DVL+ G PCQ FS AG
Sbjct: 64 YNLKP--DVLIHGSPCQDFSIAG 84


>gi|23100791|ref|NP_694258.1| cytosine-specific methyltransferase [Oceanobacillus iheyensis
           HTE831]
 gi|50897489|sp|Q8EL95|MT36_OCEIH RecName: Full=Putative modification methylase OB3336; AltName:
           Full=Cytosine-specific methyltransferase; AltName:
           Full=M.OihORF3336P
 gi|22779025|dbj|BAC15292.1| cytosine-specific methyltransferase [Oceanobacillus iheyensis
           HTE831]
          Length = 460

 Score = 70.6 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS--VKTYQANFP----NTLIFGDIA 57
           + DLF G GG+ L  +              E++  +  V ++  ++     +  +  DI 
Sbjct: 17  VVDLFSGCGGLALGFQLA----GFNIRKGIELDRDASDVASFNLHWRQGKHDRHLNNDIT 72

Query: 58  KIKTQDI-PDHD-----VLLAGFPCQPFSQAG 83
            +   +   D D     +++ G PCQ +S+ G
Sbjct: 73  LLSANEFYNDLDRKNDLIVIGGPPCQAYSKIG 104


>gi|268602423|ref|ZP_06136590.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          PID18]
 gi|268586554|gb|EEZ51230.1| site-specific DNA-methyltransferase HphI [Neisseria gonorrhoeae
          PID18]
          Length = 315

 Score = 70.2 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 16 LDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIPDH------D 68
          +  EQ       +   S E+     +TY+ NFP + L+  D+  +  QD+ +       D
Sbjct: 1  MGFEQA----GFQQLLSVEMESDYCQTYRTNFPRHQLLQKDLTTLTEQDLTNCLNGQSVD 56

Query: 69 VLLAGFPCQPFSQAG 83
          +++ G PCQ FS AG
Sbjct: 57 LVIGGPPCQGFSMAG 71


>gi|16125285|ref|NP_419849.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|221234022|ref|YP_002516458.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
 gi|13422327|gb|AAK23017.1| C-5 cytosine-specific DNA methylase [Caulobacter crescentus CB15]
 gi|220963194|gb|ACL94550.1| DNA-cytosine methyltransferase [Caulobacter crescentus NA1000]
          Length = 335

 Score = 70.2 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKI 59
          + +  LFCG GG+    E+       E   + +    SVK+Y  N P+  +    D+++I
Sbjct: 1  MVLLSLFCGAGGLDQGFEEA----GFEVGLALDRKLDSVKSYNLNRPSAAVARVKDLSEI 56

Query: 60 KTQDIPDH-------DVLLAGFPCQPFSQA 82
            QDI D          ++ G PCQ FSQA
Sbjct: 57 TIQDIDDLYGKEFSPSGVIGGPPCQSFSQA 86


>gi|168207191|ref|ZP_02633196.1| modification methylase ScrFIB [Clostridium perfringens E str.
          JGS1987]
 gi|170661387|gb|EDT14070.1| modification methylase ScrFIB [Clostridium perfringens E str.
          JGS1987]
          Length = 310

 Score = 70.2 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+KI +LF GIG  R  L        V+     EI+  +V++Y   F   L +   + + 
Sbjct: 1  MIKILELFGGIGSPRKALVNLG--VPVKAIDYVEIDKKAVRSYNEMFKKDLKYKTQSVVG 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
              P  D+L+ G PCQ FS AG
Sbjct: 59 YNLKP--DILIHGSPCQSFSIAG 79


>gi|308275289|emb|CBX31885.1| hypothetical protein N47_O13040 [uncultured Desulfobacterium sp.]
          Length = 423

 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----ANF---------P 48
           ++  DLF G GG+     +             E +  +  T +     ++          
Sbjct: 9   IRFLDLFAGAGGLSEGFIRA----GFTPVAHVEADKAACFTLKTRAAYHWLKNSGRLDRY 64

Query: 49  NTLIFGDIA-------------------KIKTQDI-------------PDHDVLLAGFPC 76
           N  + G I                    +I+   +                D+++ G PC
Sbjct: 65  NAYLHGSITRGELYELVPKKQILSVINSEIREDSLAEIFGEIDILLRGEKVDLIIGGPPC 124

Query: 77  QPFSQAG 83
           Q +S AG
Sbjct: 125 QAYSLAG 131


>gi|109946897|ref|YP_664125.1| site-specific DNA-methyltransferase [Helicobacter acinonychis
          str. Sheeba]
 gi|109714118|emb|CAJ99126.1| site-specific DNA-methyltransferase [Helicobacter acinonychis
          str. Sheeba]
          Length = 418

 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            + + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNVCEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +I  + +      + DV+ AG  C+ FS AG
Sbjct: 59 EIDPKKLQTQIKQEIDVIFAGIVCKSFSLAG 89


>gi|149919032|ref|ZP_01907517.1| DNA-cytosine methyltransferase family protein [Plesiocystis
          pacifica SIR-1]
 gi|149820185|gb|EDM79604.1| DNA-cytosine methyltransferase family protein [Plesiocystis
          pacifica SIR-1]
          Length = 401

 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIKTQ 62
            LF G GG+ L LE+       +     E +     T +AN P+  +   GDI   ++ 
Sbjct: 9  ISLFTGAGGLDLGLEKA----GFQVRLCVEKDTACRSTLRANRPDWPLSTPGDIHLGESS 64

Query: 63 DI--------PDHDVLLAGFPCQPFSQA 82
           +            ++  G PCQP+S+A
Sbjct: 65 SLMAQAGVQRRQLSLVSGGPPCQPWSKA 92


>gi|126459191|ref|YP_001055469.1| DNA-cytosine methyltransferase [Pyrobaculum calidifontis JCM
          11548]
 gi|126248912|gb|ABO08003.1| DNA-cytosine methyltransferase [Pyrobaculum calidifontis JCM
          11548]
          Length = 313

 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 + EI+  + +TY  N P+ ++   DI  +  +D+      DV++   PC+PF+
Sbjct: 20 AGFRILTAVEIDRDAARTYSFNHPDVVVLQEDIRDVDYKDLEAWGKVDVVIGSPPCEPFT 79

Query: 81 QA 82
           A
Sbjct: 80 AA 81


>gi|73853882|ref|NP_001027526.1| DNA (cytosine-5)-methyltransferase 1 [Sus scrofa]
 gi|66363554|gb|AAY45793.1| DNA methyltransferase 1 [Sus scrofa]
          Length = 1610

 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1135 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAHA-FRLNNPGSTVFTEDCNVL 1190

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1191 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1226


>gi|315268237|gb|ADT95090.1| DNA-cytosine methyltransferase [Shewanella baltica OS678]
          Length = 350

 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLFCG GG+   L++      ++     +I P     Y+ N     I   +A++  
Sbjct: 3  IRAIDLFCGAGGLTHGLQRA----GIDVIAGYDIEPQCRYAYEKNNKAVFIQESVAELTE 58

Query: 62 QDIP----DHD--VLLAGFPCQPFS 80
           +      D D  V+    PCQPFS
Sbjct: 59 DEFSHYYGDADIRVMAGCAPCQPFS 83


>gi|217976734|ref|YP_002360881.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
 gi|217502110|gb|ACK49519.1| DNA-cytosine methyltransferase [Methylocella silvestris BL2]
          Length = 383

 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKI 59
          M    + F G G  R  L       N  C F+++ +     +Y+AN+    L   D+  +
Sbjct: 1  MPDFLEFFAGGGMARAGL-----GPNWTCRFANDFDARKCASYRANWGAGELFEADVGAL 55

Query: 60 KTQDI--PDHDVLLAGFPCQPFS 80
          +  DI  P  ++  A FPCQ  S
Sbjct: 56 QPADIKTPRANLAWASFPCQDLS 78


>gi|238018550|ref|ZP_04598976.1| hypothetical protein VEIDISOL_00377 [Veillonella dispar ATCC 17748]
 gi|237865021|gb|EEP66311.1| hypothetical protein VEIDISOL_00377 [Veillonella dispar ATCC 17748]
          Length = 452

 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 14/93 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT---YQ---ANFPN-TLIFG 54
           +KI  +F G+GG  + LE +      +  +S++  P S KT   Y+     FP+   I  
Sbjct: 23  MKIFSMFDGVGGFIVGLENSSKEV-FQTLYSNQYEP-SRKTQDAYEVGLYRFPDMEHIPT 80

Query: 55  DIAKIKTQDIPD-----HDVLLAGFPCQPFSQA 82
           D+A I  +   +      D+++ GFPCQ +S A
Sbjct: 81  DVALIPNEKFGEMKSNGVDMIVGGFPCQDYSVA 113


>gi|30263689|ref|NP_846066.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Ames]
 gi|47529099|ref|YP_020448.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186533|ref|YP_029785.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Sterne]
 gi|65321007|ref|ZP_00393966.1| COG0270: Site-specific DNA methylase [Bacillus anthracis str.
          A2012]
 gi|165872817|ref|ZP_02217444.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0488]
 gi|167636020|ref|ZP_02394326.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0442]
 gi|167639742|ref|ZP_02398011.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0193]
 gi|170689288|ref|ZP_02880483.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0465]
 gi|170706823|ref|ZP_02897281.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0389]
 gi|177652017|ref|ZP_02934563.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0174]
 gi|190569254|ref|ZP_03022149.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813418|ref|YP_002813427.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CDC 684]
 gi|229604763|ref|YP_002867927.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0248]
 gi|254683612|ref|ZP_05147472.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CNEVA-9066]
 gi|254721107|ref|ZP_05182898.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A1055]
 gi|254735716|ref|ZP_05193422.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Western North America
          USA6153]
 gi|254739585|ref|ZP_05197280.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Kruger B]
 gi|254751154|ref|ZP_05203193.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Vollum]
 gi|254759471|ref|ZP_05211496.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Australia 94]
 gi|30258324|gb|AAP27552.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Ames]
 gi|47504247|gb|AAT32923.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180460|gb|AAT55836.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. Sterne]
 gi|164711495|gb|EDR17045.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0488]
 gi|167512143|gb|EDR87520.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0193]
 gi|167528532|gb|EDR91294.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0442]
 gi|170128241|gb|EDS97110.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0389]
 gi|170666746|gb|EDT17514.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0465]
 gi|172082386|gb|EDT67451.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0174]
 gi|190559628|gb|EDV13618.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006861|gb|ACP16604.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. CDC 684]
 gi|229269171|gb|ACQ50808.1| prophage LambdaBa01, C-5 cytosine-specific DNA methylase family
          protein [Bacillus anthracis str. A0248]
          Length = 259

 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+ DL  GI GI +  +       ++     EI  ++ K  + N+PN  IF D+ K+  
Sbjct: 9  LKMLDLCSGIAGISMAADWA----GIDTAAFCEIEEFNQKVLRKNYPNIPIFPDLYKLMK 64

Query: 62 QDIPD--HD-----VLLAGFPCQPFSQAG 83
          Q + D   D     V+ AG+PCQ  S  G
Sbjct: 65 QSLIDGGVDVDSIGVISAGYPCQGESLVG 93


>gi|227539355|ref|ZP_03969404.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240668|gb|EEI90683.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 386

 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-YS------VKTYQANFPN-----TL 51
           +   + G G + +  E+       E  +++E +  ++      + +++ +  N       
Sbjct: 11  VLSFYSGGGFMDMGFEKA----GFEIVWTNEFDKVFAKLHAAGITSWRKSRGNGIKAEIF 66

Query: 52  IFGDIAKIKTQDI---------PDHDVLLAGFPCQPFSQAG 83
               I  +K+ +I         P+H  ++ G PCQ FS  G
Sbjct: 67  NTKSITDVKSNEIIEEAFPNGKPEHFGIIGGPPCQDFSMNG 107


>gi|111185554|gb|AAI19484.1| Dnmt1 protein [Mus musculus]
          Length = 197

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 36  LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 91

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 92  LKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 127


>gi|308071385|ref|YP_003872990.1| Modification methylase AquI alpha subunit (cytosine-specific
          methyltransferase AquI alpha subunit) [Paenibacillus
          polymyxa E681]
 gi|305860664|gb|ADM72452.1| Modification methylase AquI alpha subunit (Cytosine-specific
          methyltransferase AquI alpha subunit) [Paenibacillus
          polymyxa E681]
          Length = 366

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKI 59
          M  +   F G GG+ + L Q           + E+ P   +T   N     +  G+I   
Sbjct: 1  MKNVISFFTGAGGLDIGLNQA----GFTVKLAVELMPIYCETLSLNHAGLNIRQGNIMDY 56

Query: 60 KTQDI---------PDHDVLLAGFPCQPFSQAG 83
            + +          + ++++ G PCQ FS AG
Sbjct: 57 SREKVYTEAGLEENEEVELMVGGSPCQSFSTAG 89


>gi|207091855|ref|ZP_03239642.1| cytosine specific DNA methyltransferase (DDEM) [Helicobacter
          pylori HPKX_438_AG0C1]
          Length = 109

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + ++GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLECLKEFDALIGLDC------DKQALITFENNHKNAIGVYGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPFSQAG 83
            +IK + I      + ++++ G PCQ FS  G
Sbjct: 57 QTEIKEKVIKLAQKLEINMIIGGPPCQGFSNKG 89


>gi|315169253|gb|EFU13270.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX1341]
          Length = 521

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------PNTLIFGD 55
            DLFCG GG    + Q          FSS+ +P   +TY                    D
Sbjct: 5   IDLFCGAGGFSEGIIQA----GFNIVFSSDKSPMVEETYTNRHKQLGLVEGVDTHFELAD 60

Query: 56  IAKIKTQDI---------------PDHDVLLAGFPCQPFSQAG 83
           I  + T+ I                  D +  G PCQ FS+ G
Sbjct: 61  IKDLTTELIFKSINNLKYGNIFEPGSIDAIFGGPPCQGFSRLG 103


>gi|73986989|ref|XP_533919.2| PREDICTED: similar to DNA (cytosine-5)-methyltransferase 1 (Dnmt1)
            (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT)
            (M.HsaI) [Canis familiaris]
          Length = 1645

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1170 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1225

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1226 LKLVMAGEATNSRGQKLPQKGDVEMLCGGPPCQGFS 1261


>gi|331090154|ref|ZP_08339042.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402100|gb|EGG81672.1| hypothetical protein HMPREF1025_02625 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 428

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 35/130 (26%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------------Y 43
               DLF G GG+     Q       +     E+N ++ KT                  Y
Sbjct: 10  YNFIDLFAGAGGLSEGFLQA----GFKPVAHVEMNEFAAKTLETRSAYYYLKGTDNLALY 65

Query: 44  QANFPNTLIFGD--------IAKIKTQD----------------------IPDHDVLLAG 73
           +      +   D        I K    +                      I   DV++ G
Sbjct: 66  KKYVSGKISRDDFMKQIPASITKTIINETMSDETLPAIFKTIDGIMKIRGINKIDVIVGG 125

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 126 PPCQAYSLVG 135


>gi|226228975|ref|YP_002763081.1| putative DNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226092166|dbj|BAH40611.1| putative DNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 407

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 26/100 (26%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++ DLF G G + L + +             + + N  +++ Y+ NFPN      I+K  
Sbjct: 64  RVVDLFSGCGAMSLGIWEASRAIGARMVPVMALDFNDKALRVYEDNFPNVWA---ISK-P 119

Query: 61  TQDIPD--------------------HDVLLAGFPCQPFS 80
            + I D                     DVL+ G PCQ  S
Sbjct: 120 VESILDGALGAPASPAERDLVARLGHVDVLIGGPPCQGHS 159


>gi|188991808|ref|YP_001903818.1| hypothetical protein xccb100_2413 [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733568|emb|CAP51773.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas
          campestris pv. campestris]
          Length = 271

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+       ++P+    GD+     ++    
Sbjct: 15 CSGI----EAVSLAWQPLGIEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTMIARQVHAGT 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 71 VPAPDILVGGTPCQSFSVAG 90


>gi|20068989|gb|AAM09642.1|AF458983_2 m6 adenine and m5 cytosine DNA methyltransferase [Hafnia alvei]
          Length = 1061

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 27/102 (26%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----NTLIFG--DIA 57
            D+FCG GG+ L LE            + + N  ++ TY  N P     +    G   + 
Sbjct: 812 VDVFCGAGGLSLGLESA----GWNIVAAIDNNSDALDTYCFNRPCDLEPDNAQEGRTAVF 867

Query: 58  KIKTQDIPDH----------------DVLLAGFPCQPFSQAG 83
           K   Q+  +                 D+L+ G PCQ FS AG
Sbjct: 868 KRDLQERREFEDVVTRIETGLGSTKLDLLVGGPPCQGFSHAG 909


>gi|293417389|ref|ZP_06660013.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|291430909|gb|EFF03905.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
          Length = 345

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLFCG GG+   L+Q      ++     +I       Y++N     I  DI+ +   
Sbjct: 4  KVVDLFCGAGGLTHGLKQA----GLDVVAGIDIESACRVAYESNNSALFIEKDISLVTKD 59

Query: 63 DIPD------HDVLLAGFPCQPFSQ 81
          ++ D        VL    PCQPFS+
Sbjct: 60 ELNDLFEGAQVRVLAGCAPCQPFSR 84


>gi|29366785|ref|NP_813725.1| gp9.1 [Streptomyces phage phiBT1]
 gi|29243105|emb|CAD80133.1| gp9.1 [Streptomyces phage phiBT1]
          Length = 166

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + I +L  G GG+ + +E        +    +E++  + +  +  FP+    GD+   + 
Sbjct: 1  MAILELCAGYGGLGIAVEAL---TGDKVTVVAEVHKAACEVMKYRFPDAPNIGDVRHARW 57

Query: 62 QDIP-DHDVLLAGFPCQPFSQAG 83
          +D+  + D + AGFPCQ  S AG
Sbjct: 58 EDLRGEVDTITAGFPCQDISNAG 80


>gi|329938281|ref|ZP_08287732.1| DNA-cytosine methyltransferase [Streptomyces griseoaurantiacus
          M045]
 gi|329302770|gb|EGG46660.1| DNA-cytosine methyltransferase [Streptomyces griseoaurantiacus
          M045]
          Length = 367

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           I  L  G GG+   +         +    +E +P++   +    P     GDI  +   
Sbjct: 16 TILALCAGYGGLEAAIRA---RIGGQVAAYAENDPHAATVFAHRHPGVPNLGDIRAVDWD 72

Query: 63 DIPDH---DVLLAGFPCQPFSQAG 83
           + D    DV+ AGFPC+  S AG
Sbjct: 73 RVRDVFRPDVIGAGFPCRNTSNAG 96


>gi|317179735|dbj|BAJ57523.1| Type II DNA modification enzyme [Helicobacter pylori F30]
          Length = 418

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            I + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNICEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +I  + +      + DV+ AG  C+ FS AG
Sbjct: 59 EIDPKKLQTQIKQEVDVIFAGIVCKSFSLAG 89


>gi|308062818|gb|ADO04706.1| site-specific DNA-methyltransferase [Helicobacter pylori Cuz20]
          Length = 418

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            I + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNICEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +I  + +      + DV+ AG  C+ FS AG
Sbjct: 59 EIDPKKLQTQIKQEVDVIFAGIVCKSFSLAG 89


>gi|298504342|gb|ADI83065.1| DNA methyltransferase, putative [Geobacter sulfurreducens KN400]
          Length = 305

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          ++  +LFCGIGG    +E T     V    + + +  ++ TY+ NFP       D+ ++ 
Sbjct: 1  MRAVELFCGIGGFAAAVEGT----GVHVVAALDQDDAALATYRLNFPGHGARKVDLERVS 56

Query: 61 TQDI--PDHDVLLAGFPCQPFSQAG 83
            ++     D+     PCQP+ + G
Sbjct: 57 AWELTAGGVDLWWLSPPCQPYCERG 81


>gi|310791056|gb|EFQ26585.1| C-5 cytosine-specific DNA methylase [Glomerella graminicola M1.001]
          Length = 750

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
             + D FCG GG     E+   H      ++ +    +  TY+ NFPNT +F     +  
Sbjct: 318 YTVFDSFCGAGGFSRGAERAGLH----VRYAVDNCEKACATYRLNFPNTNLFE--TSVDE 371

Query: 61  ------TQDIPDHDVLLAGFPCQPFSQA 82
                   ++   D+L    PCQ +S A
Sbjct: 372 LMRSQKETELRT-DILHLSPPCQTWSPA 398


>gi|315053597|ref|XP_003176173.1| modification methylase HphIA [Arthroderma gypseum CBS 118893]
 gi|311338019|gb|EFQ97221.1| modification methylase HphIA [Arthroderma gypseum CBS 118893]
          Length = 581

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+    +Q      +   ++ + +P ++ +Y+ANFP++L    D+A   
Sbjct: 276 YTFGDGFCGAGGVSRGAQQA----GLRLSWAFDHSPSAMNSYRANFPSSLAETSDVADFL 331

Query: 61  TQ---DIPDHDVLLAGFPCQPFSQA 82
           T    DI   DVL    PCQPFS A
Sbjct: 332 TNRSLDI-RIDVLHLSPPCQPFSPA 355


>gi|289423000|ref|ZP_06424820.1| modification methylase ScrFIB [Peptostreptococcus anaerobius
          653-L]
 gi|289156574|gb|EFD05219.1| modification methylase ScrFIB [Peptostreptococcus anaerobius
          653-L]
          Length = 329

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI +LF GIG IR    +       +     EI+   VK+Y A +        I     
Sbjct: 18 IKIIELFGGIGAIRKAFIR--QKIPHQVIDYVEIDKNCVKSYNALYNTNFKPKSILYFHP 75

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D+L+ G PCQ FS++G
Sbjct: 76 PD-EKIDLLMHGSPCQDFSRSG 96


>gi|302134308|ref|ZP_07260298.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          NCPPB 1108]
          Length = 584

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +EI P+       ++P T   GD+ K   
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIDAPDVLVGGTPCQAFSVAG 91


>gi|214010196|ref|NP_445806.3| DNA (cytosine-5)-methyltransferase 1 [Rattus norvegicus]
 gi|149020535|gb|EDL78340.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_b [Rattus
            norvegicus]
          Length = 1621

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1143 LRTLDVFSGCGGLTEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1199

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 1200 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1234


>gi|149020534|gb|EDL78339.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Rattus
            norvegicus]
          Length = 1503

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1025 LRTLDVFSGCGGLTEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1081

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 1082 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1116


>gi|149020536|gb|EDL78341.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_c [Rattus
            norvegicus]
          Length = 1634

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1156 LRTLDVFSGCGGLTEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1212

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 1213 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1247


>gi|20137608|sp|Q9Z330|DNMT1_RAT RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=DNA MTase RnoIP; Short=M.RnoIP; AltName:
            Full=DNA methyltransferase I; AltName: Full=MCMT
          Length = 1622

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1144 LRTLDVFSGCGGLTEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1200

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 1201 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1235


>gi|4160670|dbj|BAA37118.1| DNA cytosine 5 methyltransferase [Rattus rattus]
          Length = 1622

 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1144 LRTLDVFSGCGGLTEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1200

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G++     Q +P   D ++L  G PCQ FS
Sbjct: 1201 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFS 1235


>gi|332674342|gb|AEE71159.1| site-specific DNA-methyltransferase [Helicobacter pylori 83]
          Length = 418

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            I + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNICEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +I  + +      + DV+ AG  C+ FS AG
Sbjct: 59 EIDPKKLQTQIKQEVDVIFAGIVCKSFSLAG 89


>gi|301772046|ref|XP_002921451.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Ailuropoda melanoleuca]
          Length = 1676

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1199 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1254

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1255 LKLVMAGEATNPRGQKLPQKGDVEMLCGGPPCQGFS 1290


>gi|281337410|gb|EFB12994.1| hypothetical protein PANDA_010327 [Ailuropoda melanoleuca]
          Length = 1576

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1099 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1154

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1155 LKLVMAGEATNPRGQKLPQKGDVEMLCGGPPCQGFS 1190


>gi|228471277|ref|ZP_04056083.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
 gi|228306919|gb|EEK16017.1| modification methylase HgiDII [Porphyromonas uenonis 60-3]
          Length = 351

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L +      ++     +++      Y+ N     I+ DI  +  ++
Sbjct: 5  VVDLFCGIGGLSYGLREA----GLQILAGYDLDQTCAFAYERNNNAQFIYKDIRLVSGKE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSTLLAETDVKVLAGCAPCQPFS 83


>gi|45357574|ref|NP_987131.1| DNA-cytosine methyltransferase [Methanococcus maripaludis S2]
 gi|45047134|emb|CAF29567.1| C-5 cytosine-specific DNA methylase [Methanococcus maripaludis S2]
          Length = 355

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 55/132 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------- 50
           +   DLFCG GG      +       +   + E++  +  +Y  N+  T           
Sbjct: 1   MNFIDLFCGCGGFSRGFVE----MGFKPLLAIELDENAANSYALNYNGTVFEKKLNDILE 56

Query: 51  -------------------------------LIFGDIAKIKTQDI---------PDHDVL 70
                                          +I  DI +I ++ I            DV+
Sbjct: 57  KDVYFKLEDFLVQDDIEEFKKSNNYENLNPVVINEDIREINSKYITNKIKDTSYSKIDVI 116

Query: 71  LAGFPCQPFSQA 82
           + G PC+ ++ A
Sbjct: 117 IGGPPCEGYTGA 128


>gi|261838825|gb|ACX98591.1| cytosine-methyltransferase [Helicobacter pylori 51]
          Length = 413

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            I + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNICEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
          +I  + +      + DV+ AG  C+ FS AG
Sbjct: 59 EIDPKKLQTQIKQEVDVIFAGIVCKSFSLAG 89


>gi|254932546|ref|ZP_05265905.1| cytosine methyl transferase [Listeria monocytogenes HPB2262]
 gi|293584103|gb|EFF96135.1| cytosine methyl transferase [Listeria monocytogenes HPB2262]
 gi|332310737|gb|EGJ23832.1| DNA (Cytosine-5-)-methyltransferase [Listeria monocytogenes str.
          Scott A]
          Length = 351

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI +I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKEIS 57

Query: 61 TQDI-----PDHDV--LLAGFPCQPFS 80
            +I      + D+  L+   PCQPFS
Sbjct: 58 DDEISALYPENTDIRLLMGCAPCQPFS 84


>gi|12275200|emb|CAC22275.1| cytosine methyl transferase [Listeria monocytogenes]
          Length = 352

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI +I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKEIS 57

Query: 61 TQDI-----PDHDV--LLAGFPCQPFS 80
            +I      + D+  L+   PCQPFS
Sbjct: 58 DDEISALYPENTDIRLLMGCAPCQPFS 84


>gi|29566171|ref|NP_817742.1| gp65 [Mycobacterium phage Che9c]
 gi|29424896|gb|AAN12623.1| gp65 [Mycobacterium phage Che9c]
          Length = 513

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          ML +TDLFCG GG             VE    S+  +  +V+T+  N P+   +  D+++
Sbjct: 1  MLTLTDLFCGAGGSSTG---AIEIPGVEVRVASNHWD-LAVETHNTNHPDADHVCADLSQ 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
          I  +  P  D+L A   C   S A
Sbjct: 57 IDPRRFPRTDILWASPECTNHSVA 80


>gi|86141746|ref|ZP_01060270.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831309|gb|EAQ49765.1| DNA-cytosine methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 410

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 36/128 (28%), Gaps = 50/128 (39%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------------- 42
           L   DLF G GG+             E     EI+  + +T                   
Sbjct: 4   LNFIDLFSGAGGLSEGFINA----GFEPIAHVEIDAKACETLETRLIYHKLKSEDKLKDY 59

Query: 43  YQANFP---------------------NTLIFGDIAKIKTQDI------PDHDVLLAGFP 75
           Y+                         NT I GD  K+    I         D+++ G P
Sbjct: 60  YKYILGDISRSDFLEKNSSSTISNSVINTAIGGDNNKVIFAKIDNLVKGKPVDLIVGGPP 119

Query: 76  CQPFSQAG 83
           CQ +S  G
Sbjct: 120 CQAYSLVG 127


>gi|158339590|ref|YP_001520979.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
           MBIC11017]
 gi|158309831|gb|ABW31447.1| C-5 cytosine-specific DNA methylase [Acaryochloris marina
           MBIC11017]
          Length = 277

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 37/137 (27%), Gaps = 62/137 (45%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---------------- 48
            DLFCG GG  L + +       +   + E +  +  TY AN                  
Sbjct: 40  IDLFCGCGGFSLGMIEG----GFQVVAAVEKDANAALTYLANLGAYPLDMNFVVDEDEAR 95

Query: 49  ----------------------------------NTLIFGDIAKIKTQDIPD-------- 66
                                                  GD+ ++  Q I D        
Sbjct: 96  FTKLLEKIMQMDKDGGIAQCFLSGQHRPPERPGVEHFWLGDVRQLTGQQILDSIGVGVGE 155

Query: 67  HDVLLAGFPCQPFSQAG 83
            D +  G PCQ FS AG
Sbjct: 156 VDCVFGGPPCQGFSIAG 172


>gi|255548992|ref|XP_002515552.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223545496|gb|EEF47001.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 404

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          +I + + GIGG+R  L +     N +   + +IN  +   Y+ NF +    G+I  +   
Sbjct: 14 RILEFYSGIGGMRYSLMKAG--VNAKVMEAFDINNIANDAYEHNFGHRPYQGNIQSLTAA 71

Query: 63 DIPD--HDVLLAGFPCQPFSQAG 83
          D+        L   PCQP+++ G
Sbjct: 72 DLDSYAAHAWLLSPPCQPYTRQG 94


>gi|329955696|ref|ZP_08296604.1| DNA (cytosine-5-)-methyltransferase [Bacteroides clarus YIT 12056]
 gi|328526099|gb|EGF53123.1| DNA (cytosine-5-)-methyltransferase [Bacteroides clarus YIT 12056]
          Length = 465

 Score = 69.4 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 38/120 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-------------------------NHRNVECFFSSEIN 36
           LKI  LF G GG+ L  E +F                            N    F+++I 
Sbjct: 54  LKILSLFSGCGGMDLGFEGSFIAPYKSIAPHPEWIEKHINEDWVSVKPTNFSLVFANDIL 113

Query: 37  PYSVKT---YQANF---PNTLIFGDIAKIKTQD------IPD-HDVLLAGFPCQPFSQAG 83
             +  T   +   +   P+      +  +  Q        P+  DV++ GFPCQ FS +G
Sbjct: 114 KEASLTWTRFMKRYGYDPSIYRTESVVDLVKQHKKGVKIFPENVDVVVGGFPCQDFSVSG 173


>gi|37524602|ref|NP_927946.1| hypothetical protein plu0600 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784026|emb|CAE12895.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 379

 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           + F GIG  R  LE       ++  ++++ +      Y+  +  N L+  D+  +   D
Sbjct: 15 LEFFAGIGLARAGLELA----GIKTLWANDYDINKKAMYEGQWGGNELLLADVHSLCGDD 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  DV  +  PC   S AG
Sbjct: 71 LPTVDVAWSSSPCTDLSLAG 90


>gi|255322450|ref|ZP_05363595.1| modification methylase HgiDII [Campylobacter showae RM3277]
 gi|255300358|gb|EET79630.1| modification methylase HgiDII [Campylobacter showae RM3277]
          Length = 351

 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           K  D FCG GG+   L Q      +      + +  + +TY+ N   ++ I  DI K+K
Sbjct: 4  YKAIDFFCGGGGMTCGLRQA----GIYVVAGIDFDKDAKETYEYNNKGSVFIHSDIRKLK 59

Query: 61 TQ------DIPDHD---VLLAGFPCQPFSQ 81
                   I  +D   +     PCQ +S 
Sbjct: 60 IDYFEQNFHINRNDDNLIFAGCSPCQFYSI 89


>gi|168467807|ref|ZP_02701644.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
          SL317]
 gi|195629099|gb|EDX48473.1| Dmt [Salmonella enterica subsp. enterica serovar Newport str.
          SL317]
          Length = 819

 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L    +  GI          +    +   + SEI P+        +P     GD+ K   
Sbjct: 4  LSYGSVCSGI----EAASIAWEPLGMRPAWFSEIEPFPCAVLAERWPEVPNLGDMTKIAA 59

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           I   ++   D+L+ G PCQ FS AG
Sbjct: 60 SIAANEVAAPDLLVGGTPCQAFSIAG 85


>gi|332995746|gb|AEF05801.1| DNA-cytosine methyltransferase [Alteromonas sp. SN2]
          Length = 369

 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPD-HDVLLAGFP 75
          + +       +C F+++ +   V TY+ N+ N T++  DI  ++  D+    D++ A FP
Sbjct: 1  MARAGLDSGWKCLFANDFDYKKVNTYKKNWGNETIVQSDIKTLQCSDLKGAADLVWASFP 60

Query: 76 CQPFS 80
          CQ  S
Sbjct: 61 CQDLS 65


>gi|254416815|ref|ZP_05030564.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176361|gb|EDX71376.1| DNA-cytosine methyltransferase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 391

 Score = 69.4 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 23/98 (23%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAKIKT 61
             LF G  G+ L LE              E +  SVKT   N P    + I   I  I T
Sbjct: 9   ISLFSGAFGLDLGLELA----GFHTVSVVEKDRDSVKTIALNRPYLHESAIPRAIETIST 64

Query: 62  QDI----------------PDHDVLLAGFPCQPFSQAG 83
           QD+                 + D+++ G PCQPFS AG
Sbjct: 65  QDLLLEGGRVLGKGRALRPNEVDLVVGGAPCQPFSTAG 102


>gi|75812610|ref|YP_320229.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
 gi|75705366|gb|ABA25040.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
          29413]
          Length = 253

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGI-RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M  +  LF GIGG+    +         +     EI+PYS    +   P T I  DI   
Sbjct: 1  MKSVLSLFSGIGGLCHHGIAAAGLSHKFQVRQFVEISPYSQSVLRYEQPQTPIHSDITTY 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D+L  GFPC   S +G
Sbjct: 61 HCN-RGQFDILCGGFPCAGTSNSG 83


>gi|68536951|ref|YP_251655.1| putative DNA restriction-modification system, DNA methylase
          [Corynebacterium jeikeium K411]
 gi|68264550|emb|CAI38038.1| putative DNA restriction-modification system, DNA methylase
          [Corynebacterium jeikeium K411]
          Length = 341

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L   ++  G GG  L LE              E++ ++V T +AN P   ++ GD+    
Sbjct: 5  LTSVEICAGAGGQALGLEAA----GFIHRAVVELDGHAVSTLRANRPAWNIVHGDVLDFD 60

Query: 61 TQDIPD-HDVLLAGFPCQPFSQAG 83
               D  D+L  G PC PFS AG
Sbjct: 61 ISPFADDLDLLAGGVPCPPFSIAG 84


>gi|116871711|ref|YP_848492.1| cytosine methyl transferase [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116740589|emb|CAK19709.1| cytosine methyl transferase [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 351

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++   DLFCG+GG+   +++T     +      +I      +Y+ N     I  DI  I 
Sbjct: 2  IVNAVDLFCGVGGLTCGVQKT----GINVIAGYDIAKECQYSYEYNNKARFIHKDIKDIS 57

Query: 61 TQDI-----PDHDV--LLAGFPCQPFS 80
            +I      + D+  L+   PCQPFS
Sbjct: 58 DNEISALYPENTDIRLLMGCAPCQPFS 84


>gi|150024948|ref|YP_001295774.1| type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771489|emb|CAL42958.1| Probable type II modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 425

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 42/123 (34%)

Query: 3   KITDLFCGIGGIRLDLEQTFN--------------------------HRNVECFFSSEIN 36
            +  LF G GG+ +  E  F                               E  F+++I+
Sbjct: 4   NLLSLFSGCGGMDIGFEGGFKIPKATINTDIHKDWIQKEDSTHYYLKETFFETKFANDIS 63

Query: 37  PYSVKTYQANF--------PNTLIFGDIAKI-------KTQDIPD-HDVLLAGFPCQPFS 80
            ++   +   F          T   G I  I        T   P+  +++  GFPCQ FS
Sbjct: 64  EHAKIAWNNYFSTKRGYDLNGTFKVGSIVDIVKEYKNGNTTVFPENVEIVTGGFPCQDFS 123

Query: 81  QAG 83
            AG
Sbjct: 124 VAG 126


>gi|46200907|ref|ZP_00207896.1| COG0270: Site-specific DNA methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 561

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 21  TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPF 79
            +        F +EI P+       ++P+    GD+  I  Q      DVL+ G PCQ F
Sbjct: 40  AWEPLGWRPAFFAEIEPFPSAVLAHHYPHVPNLGDMTAIDGQAWRGKIDVLVGGTPCQAF 99

Query: 80  SQAG 83
           S AG
Sbjct: 100 SVAG 103


>gi|296163057|ref|ZP_06845831.1| C-5 cytosine-specific DNA methylase [Burkholderia sp. Ch1-1]
 gi|295886701|gb|EFG66545.1| C-5 cytosine-specific DNA methylase [Burkholderia sp. Ch1-1]
          Length = 304

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          ++  DLF G GG                 ++    P + + +  N P T     D+ +  
Sbjct: 1  MRAIDLFSGAGGFTEGAVMA----GCSVVWAGNHWPLACEYHARNHPETEHACQDLQQAD 56

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + +P HD++LA   CQ  S A
Sbjct: 57 WRTVPTHDLMLAAPACQGHSPA 78


>gi|284159927|ref|YP_001060514.2| BsaWI methylase [Burkholderia pseudomallei 668]
 gi|283775103|gb|ABN83996.2| BsaWI methylase [Burkholderia pseudomallei 668]
          Length = 440

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNT---LIFG 54
            DLF G GG+ L L    ++   E  F+ E +  + +T   N       +PN      + 
Sbjct: 6   IDLFAGCGGLSLGL----HYAGWEGLFAVERDAMAFETLYRNMIDGAAAYPNYAAWPAWL 61

Query: 55  DIAKIKTQDIPD--------------HDVLLAGFPCQPFSQAG 83
           +   I    + D               D+++ G PCQ FS  G
Sbjct: 62  EKTNIDLTKLLDNQQSRRQLRALSGTVDLIVGGPPCQGFSVGG 104


>gi|227540659|ref|ZP_03970708.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227239483|gb|EEI89498.1| possible DNA (cytosine-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 386

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-YS------VKTYQANFPN-----TL 51
           +   + G G + +  E+       E  +++E +  ++      + +++ +  N       
Sbjct: 11  VLSFYSGGGFMDMGFEKA----GFEIVWTNEFDKVFAKLHAAGITSWRKSRGNGIKAEIF 66

Query: 52  IFGDIAKIKTQDI---------PDHDVLLAGFPCQPFSQAG 83
               I  +K+ +I         P+H  ++ G PCQ FS  G
Sbjct: 67  NTKSITDVKSNEIIKEAFPNGKPEHFGIIGGPPCQDFSMNG 107


>gi|115373224|ref|ZP_01460525.1| modification methylase NaeI [Stigmatella aurantiaca DW4/3-1]
 gi|115369825|gb|EAU68759.1| modification methylase NaeI [Stigmatella aurantiaca DW4/3-1]
          Length = 303

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             E   + EI+ ++  T + N P   +   D+           D+L  G PC PFS AG
Sbjct: 2  AGFEHVAAVEIDKHACATLRLNRPQWRVFEEDLKDFSGSSFRGVDLLAGGVPCPPFSIAG 61


>gi|212693075|ref|ZP_03301203.1| hypothetical protein BACDOR_02582 [Bacteroides dorei DSM 17855]
 gi|212664361|gb|EEB24933.1| hypothetical protein BACDOR_02582 [Bacteroides dorei DSM 17855]
          Length = 436

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 38/130 (29%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT---------YQANFP---- 48
            K  DLF G GG+     +       E     E++ Y+  T          +AN      
Sbjct: 7   YKFIDLFAGAGGLSEGFIRA----GFEPIAHIEMDHYACDTLKTRAAYHYLKANNKLSIY 62

Query: 49  -------------------------NTLIFGDIAKIKTQDI----------PDHDVLLAG 73
                                    +T+I   I K     I             D+++ G
Sbjct: 63  EQYLRTKKEKTDGAWLWNQVPKEVIDTVIQEAIGKETIDGIFKKVDRLCKGQKVDIIIGG 122

Query: 74  FPCQPFSQAG 83
            PCQ +S AG
Sbjct: 123 PPCQAYSIAG 132


>gi|313886494|ref|ZP_07820210.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312924040|gb|EFR34833.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 351

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L +      ++     +++      Y+ N     I+ DI  +  ++
Sbjct: 5  VVDLFCGIGGLSYGLREA----GLQILAGYDLDQTCAFAYERNNNAQFIYKDIRMVSGKE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSTLLAETDVKVLAGCAPCQPFS 83


>gi|225849813|ref|YP_002730047.1| putative modification methylase FnuDI [Persephonella marina
          EX-H1]
 gi|225646519|gb|ACO04705.1| putative modification methylase FnuDI [Persephonella marina
          EX-H1]
          Length = 307

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K+ DLFCG+GG    L +       E     +IN +  K ++ N     I   I  +K 
Sbjct: 1  MKVLDLFCGMGGFSYGLSKA----GYEITG-VDINKWVEKIFEKNCIGKAI---IKDLKN 52

Query: 62 QDI--PDHDVLLAGFPCQPFS 80
            I   + D+++ G PC+P+S
Sbjct: 53 DFIFDENPDIIVGGSPCKPWS 73


>gi|301328257|ref|ZP_07221377.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|300845286|gb|EFK73046.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 341

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 1  ML--KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M+  K+ DLFCG GG+   L+       ++     ++       Y+ N  +  I  DIAK
Sbjct: 1  MMTVKVIDLFCGAGGLTHGLQLA----GLDVVAGIDLEGECRFPYERNNKSKFIEQDIAK 56

Query: 59 IKTQDI------PDHDVLLAGFPCQPFS 80
          +  +++          VL    PCQPFS
Sbjct: 57 VTKEELLRLYGDASVKVLAGCAPCQPFS 84


>gi|238759658|ref|ZP_04620818.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
 gi|238702086|gb|EEP94643.1| C-5 cytosine-specific DNA methylase [Yersinia aldovae ATCC 35236]
          Length = 369

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K  DLFCG GG+   L ++     +      +I       Y+ N   T I  D+  +  
Sbjct: 25  IKAVDLFCGAGGLTHGLIKS----GINVVAGYDIEESCRFAYEHNNNATFINQDVTSLSG 80

Query: 62  QDI------PDHDVLLAGFPCQPFS 80
            ++       D+ +L    PCQPFS
Sbjct: 81  DEVLRHLKNADYTLLAGCAPCQPFS 105


>gi|326469309|gb|EGD93318.1| hypothetical protein TESG_00865 [Trichophyton tonsurans CBS 112818]
          Length = 584

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
               D FCG GG+    +Q      ++  ++ +    ++ +Y+ANFP+ L    ++A+  
Sbjct: 278 YTFGDGFCGAGGVSRGAQQA----GLKLLWAFDKWESAINSYRANFPSCLAEHSEVAQFL 333

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
           T  +P     DV+    PCQPFS A
Sbjct: 334 TS-LPREILVDVIHVSPPCQPFSPA 357


>gi|328544214|ref|YP_004304323.1| Modification methylase DdeI [polymorphum gilvum SL003B-26A1]
 gi|326413956|gb|ADZ71019.1| Modification methylase DdeI [Polymorphum gilvum SL003B-26A1]
          Length = 480

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 26/103 (25%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFG--- 54
           K  DLF G GG+ L L        +   F+ E +  + +T+  NF     P    F    
Sbjct: 45  KFVDLFSGCGGLSLGLSLA----GMRGLFAIERDDMAFETFSTNFIGDDSPEAYRFMWPS 100

Query: 55  --DIAKIKTQDI------------PDHDVLLAGFPCQPFSQAG 83
             D       ++             + +VL  G PCQ FS AG
Sbjct: 101 WLDQRAWGIDEVLGEHKEQLEQLRGEVEVLAGGPPCQGFSFAG 143


>gi|311896967|dbj|BAJ29375.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 676

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            DLF G GG+ L L +           + + +  +++T+ ANFP   +  D+ +    + 
Sbjct: 57  LDLFSGAGGLSLGLTRA----GWTLAAAVDHSGPALETHAANFPGMSLDVDLGEPAALEE 112

Query: 65  P---------DHDVLLAGFPCQPFSQAG 83
                       D++  G PCQPFS+AG
Sbjct: 113 LLTLLQPAAGRIDLVAGGPPCQPFSRAG 140


>gi|254039141|ref|ZP_04873191.1| DNA-cytosine methyltransferase [Escherichia sp. 1_1_43]
 gi|226838577|gb|EEH70606.1| DNA-cytosine methyltransferase [Escherichia sp. 1_1_43]
          Length = 349

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+K+ DLFCG GG+   L+++     +      +I+      Y+ N  +  +   +  I+
Sbjct: 1  MIKVVDLFCGAGGLTHGLQKS----GLNVVAGYDIDAACRFAYETNNKSLFVQKSVTDIE 56

Query: 61 TQDI------PDHDVLLAGFPCQPFS 80
            ++          VL    PCQPFS
Sbjct: 57 DGELVKYFEGAKVRVLAGCAPCQPFS 82


>gi|156363806|ref|XP_001626231.1| predicted protein [Nematostella vectensis]
 gi|156213100|gb|EDO34131.1| predicted protein [Nematostella vectensis]
          Length = 623

 Score = 69.0 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTL-IFGDIAK 58
           +++  LF GI      L Q  N   +  + ++S+EI+  +++  + N  + +   GDI  
Sbjct: 337 IRVLALFDGI---ATGL-QALNELGIVSDKYYSAEIDEQAIQVTKVNHGDRITHLGDIKD 392

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQA 82
           +    I +    D+++ G PCQ  S A
Sbjct: 393 LTESQIRELGPFDLVIGGSPCQDLSIA 419


>gi|170079525|ref|YP_001736159.1| cytosine-specific methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887194|gb|ACB00904.1| Cytosine-specific methyltransferase [Synechococcus sp. PCC 7002]
          Length = 270

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV--------KTYQANFPNTLI 52
          ML+  +LF GIGG    + + F    +E     +I+  +           Y   FP   I
Sbjct: 1  MLRHCELFGGIGGFSHAVAKYFPKT-IETTTYCDIDEQARSFAVPGGSAVYSEFFPKVTI 59

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            DI     Q   + D++  GFPC   SQAG
Sbjct: 60 HKDIRTYYPQQ-KEFDLITCGFPCTGTSQAG 89


>gi|260579295|ref|ZP_05847178.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
 gi|258602594|gb|EEW15888.1| modification methylase NaeI (cytosine-specificmethyltransferase
           NaeI) (M.NaeI) [Corynebacterium jeikeium ATCC 43734]
          Length = 372

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           L   ++  G GG  L LE              E++ ++V T +AN P   ++ GD+    
Sbjct: 36  LTSVEICAGAGGQALGLEAA----GFIHRAVVELDGHAVSTLRANRPAWNIVHGDVLDFD 91

Query: 61  TQDIPD-HDVLLAGFPCQPFSQAG 83
                D  D+L  G PC PFS AG
Sbjct: 92  ISPFADDLDLLAGGVPCPPFSIAG 115


>gi|150402932|ref|YP_001330226.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C7]
 gi|150033962|gb|ABR66075.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C7]
          Length = 367

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 55/132 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------- 50
           +   DLFCG GG      +       +   + E++  +  +Y  N+  T           
Sbjct: 12  MNFIDLFCGCGGFSRGFVE----MGFKPLLAIELDENAANSYALNYNGTVFEKKLNEILE 67

Query: 51  -------------------------------LIFGDIAKIKTQDI---------PDHDVL 70
                                          +I  DI +I ++ I            D++
Sbjct: 68  KEVYFKLEDFLVQDDIEEFKKLNNYENLNPVVINEDIREINSKYISNIVNNNSDSKIDLI 127

Query: 71  LAGFPCQPFSQA 82
           + G PC+ ++ A
Sbjct: 128 IGGPPCEGYTGA 139


>gi|149190497|ref|ZP_01868767.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
 gi|148835621|gb|EDL52588.1| DNA-cytosine methyltransferase [Vibrio shilonii AK1]
          Length = 349

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++  DLFCG GG+   L++      ++     +I       Y+ N     I   +  ++
Sbjct: 1  MIRAIDLFCGAGGLTHGLQRA----GIDVVAGYDIEAQCRFAYERNNDAVFIQKSVTDLQ 56

Query: 61 TQDIPDH--D----VLLAGFPCQPFS 80
           ++   +  D    VL    PCQ FS
Sbjct: 57 IEEFNHYFGDAEVRVLAGCAPCQTFS 82


>gi|283549178|ref|NP_001164522.1| DNA methyltransferase 1a [Apis mellifera]
          Length = 1366

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           LK  D+F G GG+   L Q     N    ++ E    +   Y+ N PN  +F        
Sbjct: 895 LKTLDVFAGCGGLSEGLHQAGVAEN---LWAIEKEESAAYAYRLNNPNATVFIEDCNVLL 951

Query: 54  -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                G+      Q +P     ++L  G PCQ FS
Sbjct: 952 KKVMNGETTNEIGQKLPQKGQVELLCGGPPCQGFS 986


>gi|294949213|ref|XP_002786099.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900227|gb|EER17895.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 125

 Score = 68.6 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA---KI 59
          K+ +LF GIGG+R  L       + +   + ++N  S K Y  ++ ++ I  +IA    +
Sbjct: 7  KVLELFSGIGGMRCALASAGLIMSSKIT-AVDVNTESNKVYARSYGDSPIAKNIASAGSV 65

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
          K  D    D+     PCQP+++ G
Sbjct: 66 KWFDSMAADMWTLSPPCQPYTRQG 89


>gi|254804174|ref|YP_003082395.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|304388624|ref|ZP_07370688.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria
          meningitidis ATCC 13091]
 gi|254667716|emb|CBA03597.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|304337441|gb|EFM03611.1| possible DNA (cytosine-5-)-methyltransferase [Neisseria
          meningitidis ATCC 13091]
          Length = 351

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHD-VLLAGFPCQPFSQ 81
          + +         D D +L+   PCQ +S 
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWSV 90


>gi|322691196|ref|YP_004220766.1| phage protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456052|dbj|BAJ66674.1| hypothetical phage protein [Bifidobacterium longum subsp. longum
          JCM 1217]
          Length = 509

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           K   LF G  G+ + + +       E    S+I P  +     + P     GDI KI  
Sbjct: 6  YKTISLFSGYLGLDIGVSKAIGE--GELVGWSDIEPGPLALGSHHAPKARRLGDITKIDW 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +   D +V+  GF CQ  S AG
Sbjct: 64 EKYKDIEVMAGGFCCQSLSLAG 85


>gi|330997448|ref|ZP_08321299.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
 gi|329570822|gb|EGG52538.1| DNA (cytosine-5-)-methyltransferase [Paraprevotella xylaniphila YIT
           11841]
          Length = 417

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 31/110 (28%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           L   DLF G GG+     Q+ +        + E      +T +        + D   +  
Sbjct: 7   LNTLDLFAGCGGLTEGFLQSGH---YHTIGAVEWERAPRETLKHRLQTAWGYNDADNVVV 63

Query: 60  -----KTQDI---------------------PDHDVLLAGFPCQPFSQAG 83
                +T+++                        DV++ G PCQ +S AG
Sbjct: 64  RFDIQRTEELIHGFDDPVYGLHEGLENLVGGRAVDVIIGGPPCQAYSLAG 113


>gi|237726505|ref|ZP_04556986.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. D4]
 gi|229435031|gb|EEO45108.1| C-5 cytosine-specific DNA methylase [Bacteroides dorei 5_1_36/D4]
          Length = 356

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +++ DLFCGIGG+   +      + ++     +++   +  Y+ N     IF DI  ++ 
Sbjct: 11 IEVVDLFCGIGGLSYGM----KSKGLKIRAGFDLDQTCLYAYETNNEAKFIFKDIRTVRK 66

Query: 62 QDI------PDHDVLLAGFPCQPFS 80
          ++I          VL    PCQPFS
Sbjct: 67 EEIIPFYSKKSIKVLAGCAPCQPFS 91


>gi|121635670|ref|YP_975915.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis FAM18]
 gi|218767413|ref|YP_002341925.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis Z2491]
 gi|120867376|emb|CAM11148.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis FAM18]
 gi|121051421|emb|CAM07714.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis Z2491]
 gi|261393340|emb|CAX50974.1| putative cytosine-specific methyltransferase [Neisseria
          meningitidis 8013]
 gi|319409676|emb|CBY89977.1| putative cytosine-specific methyltransferase [Neisseria
          meningitidis WUE 2594]
 gi|325131421|gb|EGC54130.1| modification methylase [Neisseria meningitidis M6190]
          Length = 351

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHD-VLLAGFPCQPFSQ 81
          + +         D D +L+   PCQ +S 
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWSV 90


>gi|254671709|emb|CBA09495.1| modification methylase [Neisseria meningitidis alpha153]
          Length = 351

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK  D FCG GG+   ++       ++     +  P   +TY+AN     I  D+ +++ 
Sbjct: 6  LKAVDFFCGGGGMSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQP 61

Query: 62 QDIP--------DHD-VLLAGFPCQPFSQ 81
          + +         D D +L+   PCQ +S 
Sbjct: 62 ETLEKELGLKKNDDDLILIGCSPCQYWSV 90


>gi|229489314|ref|ZP_04383178.1| DNA methylase [Rhodococcus erythropolis SK121]
 gi|229323807|gb|EEN89564.1| DNA methylase [Rhodococcus erythropolis SK121]
          Length = 358

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLF G GG+ +         +       E +  +  T +A    +   GD+  +   
Sbjct: 15 RMVDLFAGPGGLDVAAHWLGVPVHG-----VEWDKDACVTRRA-AGLSTEEGDVRCVGPA 68

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          + P   VL  G PCQ ++ AG
Sbjct: 69 NFPGTTVLAGGPPCQTYTLAG 89


>gi|229133284|ref|ZP_04262113.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST196]
 gi|228650100|gb|EEL06106.1| Phage-related DNA methylase [Bacillus cereus BDRD-ST196]
          Length = 73

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK 58
          L   D F G+G  R+ +EQ  +    +C    E +  + KTY+A   N       DI  
Sbjct: 3  LTFIDWFAGVGMARIGMEQAGH----KCVGYCEWDKAARKTYEAMHNNNGEWTEVDIRD 57


>gi|288941188|ref|YP_003443428.1| DNA-cytosine methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896560|gb|ADC62396.1| DNA-cytosine methyltransferase [Allochromatium vinosum DSM 180]
          Length = 372

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLFCG+GG+   L +      ++     +I+      Y+AN P   I  D+  +  
Sbjct: 15 IKAVDLFCGVGGLTHGLSRG----GIQVMAGIDIDASCRYPYEANNPARFIEHDVGTLPP 70

Query: 62 QDI------PDHDVLLAGFPCQPFS 80
            I       D+ +L    PCQPFS
Sbjct: 71 DLITPYYENADYTLLAGCAPCQPFS 95


>gi|194303019|ref|YP_002014288.1| gp72 [Mycobacterium phage Boomer]
 gi|194153067|gb|ACF34134.1| gp72 [Mycobacterium phage Boomer]
          Length = 475

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          ML + D+FCG GG      Q      +E    ++     +V+T+ AN P T  I  D+++
Sbjct: 1  MLTLLDMFCGAGGSSTGAVQV---PGIEVRVAANHW-KLAVETHGANHPTTDHICADLSQ 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
          I  +  P+ D+L A   C   S A
Sbjct: 57 IDPRLFPNTDILWASPSCTKHSIA 80


>gi|109522148|ref|YP_655825.1| gp64 [Mycobacterium phage PMC]
 gi|91980848|gb|ABE67565.1| gp64 [Mycobacterium phage PMC]
          Length = 475

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          ML + D+FCG GG      Q      +E    ++     +V+T+ AN P T  I  D+++
Sbjct: 1  MLTLLDMFCGAGGSSTGAVQV---PGIEVRVAANHW-KLAVETHGANHPTTDHICADLSQ 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
          I  +  P+ D+L A   C   S A
Sbjct: 57 IDPRLFPNTDILWASPSCTKHSIA 80


>gi|148271753|ref|YP_001221314.1| putative cytosine-specific DNA methylase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829683|emb|CAN00599.1| putative cytosine-specific DNA methylase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 391

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD 55
           K+ + F G+G  R+ LE        +  ++++  P     Y+ NF        +    GD
Sbjct: 16  KVMEFFAGVGLARMGLESA----GFQVTWANDYEPDKHALYERNFRDREAGRDHIYRVGD 71

Query: 56  IAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           +  +   ++P D  +     PC   S AG
Sbjct: 72  VFGLDHDELPRDAALAWGSSPCTDLSLAG 100


>gi|78047842|ref|YP_364017.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
 gi|78036272|emb|CAJ23963.1| cytosine-specific DNA methyltransferase [Xanthomonas campestris
          pv. vesicatoria str. 85-10]
          Length = 512

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----KTQD 63
            GI      +   +    +E  + +EI P+       ++P+    GD+  I        
Sbjct: 15 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTTIARQVHAGT 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 71 VPAPDILVGGTPCQSFSVAG 90


>gi|237728463|ref|ZP_04558944.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
 gi|226909941|gb|EEH95859.1| DNA-cytosine methyltransferase [Citrobacter sp. 30_2]
          Length = 318

 Score = 68.6 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE        +     E+ P +  T + N P   +I  D+ +  
Sbjct: 4  FNSLEMCAGAGGQALGLEMA----GFDHAALVELEPAACATLRLNRPAWNVIEDDLRRFD 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D++  G PC PFS+AG
Sbjct: 60 GRPYQGIDLVAGGVPCPPFSKAG 82


>gi|17233286|ref|NP_490376.1| hypothetical protein all7270 [Nostoc sp. PCC 7120]
 gi|17135808|dbj|BAB78354.1| all7270 [Nostoc sp. PCC 7120]
          Length = 238

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGI-RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M  +  LF GIGG+    +         +     EI+PYS    +   P T I  DI   
Sbjct: 1  MKSVLSLFSGIGGLCHHGIAAAGLSHKFQVKQFVEISPYSQSQLRHEQPQTPIHSDITTY 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D++  GFPC   S +G
Sbjct: 61 NCH-RGQFDIVCGGFPCAGTSNSG 83


>gi|325567983|ref|ZP_08144484.1| type II DNA modification methyltransferase Spn5252IP
          [Enterococcus casseliflavus ATCC 12755]
 gi|325158457|gb|EGC70607.1| type II DNA modification methyltransferase Spn5252IP
          [Enterococcus casseliflavus ATCC 12755]
          Length = 176

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAKIKTQDIP---DHDVLLAGFP 75
                 C    EI+ ++ K+YQ+  P+T   +   DI K   + I      +++  GFP
Sbjct: 1  MEQAGYRCVGYCEIDGHARKSYQS-IPDTKQEVEMYDITKFSDEFIRGIGRVNIIAGGFP 59

Query: 76 CQPFSQAG 83
          CQ FS AG
Sbjct: 60 CQAFSLAG 67


>gi|91773503|ref|YP_566195.1| DNA-cytosine methyltransferase [Methanococcoides burtonii DSM
          6242]
 gi|91712518|gb|ABE52445.1| DNA-cytosine methyltransferase [Methanococcoides burtonii DSM
          6242]
          Length = 569

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 20/98 (20%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            + D FCG GG      Q       E  F+ +I   + +T++ N PN   F        
Sbjct: 5  FTVADFFCGAGGSSEGFRQA----GFEIVFALDIWNPARETHKLNHPNCAHFGLDCYKDK 60

Query: 54 -GDIAKIKT----QDIPDHDVLLAGFPCQPFS---QAG 83
           GDI KI+T      IPD DV++   PC  FS   +AG
Sbjct: 61 DGDILKIETTDIDDVIPDVDVIVGSPPCVSFSSSNRAG 98


>gi|66768381|ref|YP_243143.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
          8004]
 gi|66573713|gb|AAY49123.1| DNA methyltransferase [Xanthomonas campestris pv. campestris str.
          8004]
          Length = 512

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+       ++P+    GD+     ++    
Sbjct: 15 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHHYPHVPNLGDMTMIARQVHAGT 70

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 71 VPAPDILVGGTPCQSFSVAG 90


>gi|319428134|gb|ADV56208.1| DNA-cytosine methyltransferase [Shewanella putrefaciens 200]
          Length = 305

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          M++  DLF G GG     +       V   +++  N  +V  ++ N P       D+ + 
Sbjct: 1  MVRGIDLFAGAGGTTSGAKMA----GVRMVWAANHNRTAVDYHEINHPEVKHAHQDLQQA 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
              +PDHD++ A   CQ  S+A
Sbjct: 57 NWALVPDHDIVFASPCCQGHSRA 79


>gi|332878260|ref|ZP_08445986.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683711|gb|EGJ56582.1| DNA (cytosine-5-)-methyltransferase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 424

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA----NF---------- 47
           L   DLF G GG+     Q             E++ ++  T +     ++          
Sbjct: 6   LNFIDLFAGAGGLSEGFVQA----GYIPIAHIEMDRHACDTLKTRAAFHWLKANNQLHKY 61

Query: 48  --------------------PNTLIFGDI-AKIKTQDI-------------PDHDVLLAG 73
                               P  +I   I ++I    I                D+++ G
Sbjct: 62  KEYLYKKQEKEDGSKLWAQVPEEVINSVIQSEIGENTILNLFKQVDSLIKDKKIDLIIGG 121

Query: 74  FPCQPFSQAG 83
            PCQ +S AG
Sbjct: 122 PPCQAYSIAG 131


>gi|251792768|ref|YP_003007494.1| DNA-cytosine methyltransferase [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534161|gb|ACS97407.1| DNA-cytosine methyltransferase [Aggregatibacter aphrophilus
          NJ8700]
          Length = 383

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M     +  GI  + +              + SEI P+     Q ++PN    GD+  + 
Sbjct: 1  MFSYGSVCSGIEAVSVA-----WQDFATPLWFSEIEPFPCALLQHHYPNVPNLGDMQNLP 55

Query: 61 TQ----DIPDHDVLLAGFPCQPFSQAG 83
           +    +IP  DVL+ G PCQ +S AG
Sbjct: 56 QKILHREIPAPDVLIGGTPCQSYSYAG 82


>gi|255020360|ref|ZP_05292428.1| DNA-cytosine methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970280|gb|EET27774.1| DNA-cytosine methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 449

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 28/103 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTL----------- 51
            DLF G GG+ L L++          F+ E +P + +T   NF  P              
Sbjct: 12  IDLFAGCGGLSLGLKEAGWSG----LFAIERDPMAFETLSQNFLVPGAPYASFADWPAWL 67

Query: 52  --IFGDI-AKIKTQDIPDH--------DVLLAGFPCQPFSQAG 83
                DI A +K + +  H         ++  G PCQ FS  G
Sbjct: 68  PKTNHDIVALLKNESVRKHLRSLRGAVTMIAGGPPCQGFSVGG 110


>gi|282879499|ref|ZP_06288233.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306646|gb|EFA98672.1| DNA (cytosine-5-)-methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 438

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDIAKI 59
           +++  +F GIG I   L++          F+ +I+    K+Y AN+       F D    
Sbjct: 62  IRLGTMFSGIGAIEHALQRL--RLKHHIVFAGDIDANCKKSYFANYDIKEKDWFNDARTF 119

Query: 60  KTQDIP-DHDVLLAGFPCQPFSQAG 83
             +      D+L+ G PCQ FS  G
Sbjct: 120 DARKYRGQIDLLVGGAPCQAFSMVG 144


>gi|255946093|ref|XP_002563814.1| Pc20g13340 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588549|emb|CAP86663.1| Pc20g13340 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 627

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               D +CG GG+    +Q      ++  ++ +I+ ++++TYQ NF +  +   D     
Sbjct: 321 YTFGDAYCGAGGVSCGAKQA----GLKLQWAVDIDKHALETYQLNFDDVEVEHSDFFSFL 376

Query: 61  TQD--IPDHDVLLAGFPCQPFSQA 82
           T D      D+     PCQ +S A
Sbjct: 377 TNDPRFLRVDIAHCSPPCQTWSPA 400


>gi|121582558|ref|YP_974087.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120608614|gb|ABM44352.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 318

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE        +     E+ P +  T + N P   +I  D+ +  
Sbjct: 4  FNSLEMCAGAGGQALGLEMA----GFDHAALVELEPAACATLRLNRPAWNVIEDDLRRFD 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     D++  G PC PFS+AG
Sbjct: 60 GRPYQGIDLVAGGVPCPPFSKAG 82


>gi|121703830|ref|XP_001270179.1| C-5 cytosine methyltransferase DmtA [Aspergillus clavatus NRRL 1]
 gi|119398323|gb|EAW08753.1| C-5 cytosine methyltransferase DmtA [Aspergillus clavatus NRRL 1]
          Length = 617

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+    ++   H      ++ + + +++ TY+ NF   L    DI    
Sbjct: 310 YTFGDGFCGAGGVSSGAQKAGLH----IKWAFDQSEHAIATYRMNFETALCEQSDIFSFL 365

Query: 61  TQ--DIPDHDVLLAGFPCQPFSQA 82
           T   D    DV     PCQ FS A
Sbjct: 366 TNGPDFLKVDVSHGSPPCQTFSPA 389


>gi|332664528|ref|YP_004447316.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333342|gb|AEE50443.1| DNA-cytosine methyltransferase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 420

 Score = 68.2 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---------------- 45
               DLF G GG+     Q       E     E+   +  T +                 
Sbjct: 3   YNFIDLFAGAGGLSEGFIQA----GFEPIAHVELEKSACNTLKTRAAYHYLKSNKRHEIY 58

Query: 46  ---------------NFPNTLIFGDI--------AKIKTQDIPD------HDVLLAGFPC 76
                          N PN ++   I          +    I         D+++ G PC
Sbjct: 59  ISYLKGEITRAELYDNVPNEILASVINLSIGDENNNLIFNQIDSYLGKGAVDLIIGGPPC 118

Query: 77  QPFSQAG 83
           Q +S AG
Sbjct: 119 QAYSVAG 125


>gi|313905794|ref|ZP_07839153.1| DNA-cytosine methyltransferase [Eubacterium cellulosolvens 6]
 gi|313469400|gb|EFR64743.1| DNA-cytosine methyltransferase [Eubacterium cellulosolvens 6]
          Length = 427

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY-------------QANFP 48
               DLF G GG+     Q             E+NPY+ KT              + N  
Sbjct: 10  YNFIDLFAGAGGLSEGFMQ----VGFSPIAHVEMNPYAAKTLETRTGYFYLKEQGKLNIY 65

Query: 49  NTLIFGDIAK-----------------------------------IKTQDIPDHDVLLAG 73
              + G+I++                                   +K Q I   DV++ G
Sbjct: 66  YDYLKGNISREKFLEYIPERLLQSVICETMSDESLPELFERIDKSMKEQGISHVDVIIGG 125

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 126 PPCQAYSLVG 135


>gi|258514794|ref|YP_003191016.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
 gi|257778499|gb|ACV62393.1| DNA-cytosine methyltransferase [Desulfotomaculum acetoxidans DSM
          771]
          Length = 402

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFG-- 54
          M    +LF G GG+ L L+++      +     E +  S    +AN    FP    +   
Sbjct: 1  MYSSIELFSGTGGLALGLQKS----GFDHRALLEWDKDSCDNIKANIERGFPLVQNWNVI 56

Query: 55 --DIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
            D+  +   D  +   ++  G PCQPFS  G
Sbjct: 57 QTDVKLVHYDDFGEGIKLVAGGPPCQPFSLGG 88


>gi|31074161|gb|AAP20551.1| DNA cytosine-5 methyltransferase 1 [Bos taurus]
          Length = 1611

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1136 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRFNNPGSTVFTKDCNVL 1191

Query: 54   ------GDIAKIKTQDI---PDHDVLLAGFPCQPFS 80
                  G++   + Q +    D ++L  G PCQ FS
Sbjct: 1192 VKLVMAGEVTNSRGQKLLQKGDVEMLCGGPPCQGFS 1227


>gi|116748761|ref|YP_845448.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697825|gb|ABK17013.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 429

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKIKTQ 62
             LF G GG+ L LE      ++ C    E+   + +T + N P+  +   G I +I   
Sbjct: 26  ISLFTGAGGLDLGLEAAGFCISI-CV---EVAKDAQETLKVNRPHWKLAEPGHIHQISPP 81

Query: 63  DIPDHD--------VLLAGFPCQPFS 80
           +I +          +L  G PCQPFS
Sbjct: 82  EILEQSNLRRGELALLSGGPPCQPFS 107


>gi|302773662|ref|XP_002970248.1| hypothetical protein SELMODRAFT_411110 [Selaginella moellendorffii]
 gi|300161764|gb|EFJ28378.1| hypothetical protein SELMODRAFT_411110 [Selaginella moellendorffii]
          Length = 565

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
           +++  LF GIGGI + LE+           S E +    +  ++ +         ++ GD
Sbjct: 438 IRVLSLFSGIGGIEVALEKLGIPIKF--LVSVETSADCHRVLRSWWHRTRQRGTHIVLGD 495

Query: 56  IAKIKTQDIPD--------HDVLLAGFPCQPFS 80
           + ++  + I +         D++  G PC  FS
Sbjct: 496 VTELSRERIEELAARAGGGFDLVAGGSPCNNFS 528


>gi|167751359|ref|ZP_02423486.1| hypothetical protein EUBSIR_02345 [Eubacterium siraeum DSM 15702]
 gi|167655605|gb|EDR99734.1| hypothetical protein EUBSIR_02345 [Eubacterium siraeum DSM 15702]
          Length = 349

 Score = 68.2 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 10/83 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG+GG+   L        +      +I+P    TY+ N        +I ++  +++
Sbjct: 6  IDLFCGVGGLTRGLLDA----GLNVVAGFDIDPTCQFTYEFNNHVDYHLRNIREVMGEEL 61

Query: 65 PDH-D-----VLLAGFPCQPFSQ 81
           +  D     +L+   PCQPFSQ
Sbjct: 62 NEIYDENVTKILVGCAPCQPFSQ 84


>gi|227503804|ref|ZP_03933853.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           striatum ATCC 6940]
 gi|227199628|gb|EEI79676.1| DNA restriction-modification system, DNA methylase [Corynebacterium
           striatum ATCC 6940]
          Length = 455

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-------DIAK 58
           ++  G GG  L LEQ   H         EI+ ++ +T + N       G       D+  
Sbjct: 120 EICAGAGGQALGLEQAGFHH----AAVVEIDNWAAETLRQNRGTEGPLGKWNVHEMDVHD 175

Query: 59  IKTQDIP-DHDVLLAGFPCQPFSQAG 83
           +  +      D+   G PC PFS AG
Sbjct: 176 LDGRPWRGKIDLFAGGVPCPPFSIAG 201


>gi|320331149|gb|EFW87118.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 145

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 1  MLKITDL--FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
          M + T L    G GG  L LE        E     EI P +  T + N P   +   D+ 
Sbjct: 18 MSRFTSLEMCAGAGGQALGLEMAG--FGHEAL--VEIEPPACATLRLNRPEWNVKEEDLR 73

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +         D++  G PC PFS+AG
Sbjct: 74 QFNGSPFFGVDLVAGGVPCPPFSKAG 99


>gi|212695555|ref|ZP_03303683.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677433|gb|EEB37040.1| hypothetical protein ANHYDRO_00072 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 321

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA----NFPNTLIFGDIAK 58
          KI +LF GIG IR            E     EI+   VK+Y A    N+    + G   K
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGENYKPKSVVG--YK 60

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          I  + I   D+++ G PCQ FS+ G
Sbjct: 61 IPNEKI---DLIMHGSPCQDFSRIG 82


>gi|21242948|ref|NP_642530.1| cytosine-specific DNA methyltransferase [Xanthomonas axonopodis
          pv. citri str. 306]
 gi|21108450|gb|AAM37066.1| cytosine-specific DNA methyltransferase [Xanthomonas axonopodis
          pv. citri str. 306]
          Length = 487

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQD 63
            GI      +   +    ++  + SE + ++       +P+    GD+ +    I+ + 
Sbjct: 17 CSGI----EAVSLAWEPLGLKPAWFSETDAFASAVLAHRYPHVPNLGDMTRLAQRIRDRS 72

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 73 VPAPDILVGGTPCQSFSVAG 92


>gi|74136491|ref|NP_001028141.1| DNA (cytosine-5)-methyltransferase 1 [Monodelphis domestica]
 gi|22023943|gb|AAM89258.1|AF527541_1 cytosine-5-methyltransferase [Monodelphis domestica]
          Length = 1514

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1037 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1093

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1094 KLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1128


>gi|242022906|ref|XP_002431878.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
           corporis]
 gi|212517219|gb|EEB19140.1| DNA cytosine-5,-methyltransferase, putative [Pediculus humanus
           corporis]
          Length = 1330

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           L+  D+F G GG+   L Q+      +  ++ E +  +   ++ N PN  +F        
Sbjct: 872 LRTLDVFAGCGGLSEGLHQSGVS---KTLWAIEQDSDAASAFKQNNPNATVFTEDCNTLL 928

Query: 54  -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                G +   K Q +P   + D++  G PCQ FS
Sbjct: 929 KEVMSGKLKNDKGQCLPQKGEVDLICGGPPCQGFS 963


>gi|163855756|ref|YP_001630054.1| putative DNA-cytosine methyltransferase [Bordetella petrii DSM
          12804]
 gi|163259484|emb|CAP41784.1| putative DNA-cytosine methyltransferase [Bordetella petrii]
          Length = 201

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P+    GD+     +++   
Sbjct: 24 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHRYPHVPNLGDMTAIARQVRAGT 79

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 80 VPAPDILVGGTPCQSFSVAG 99


>gi|198422315|ref|XP_002126359.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha [Ciona
           intestinalis]
          Length = 678

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    + L+Q      ++ F +SEI+  +++  Q   P  +  GDI K+  
Sbjct: 386 IRVLSLFDGIATGVVALKQLG--LQIQKFVASEIDEAAIRLVQNRHPEVMHVGDITKLTD 443

Query: 62  QDI---PDHDVLLAGFPCQPFSQA 82
            DI      D+++ G PC   S A
Sbjct: 444 DDITRYGPFDLVMGGSPCNDLSGA 467


>gi|50841408|gb|AAT84068.1| 5-cytosine DNA methyltransferase [Entamoeba invadens]
          Length = 324

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+I + F GIGG+R  LE++  H N   F + +IN  +   Y+ N+   ++  ++  +  
Sbjct: 9  LRILEFFSGIGGLRASLERSKVHTN-TTFCAIDINEIANTIYEGNYKEKVVVKNLDTVSV 67

Query: 62 QDIPD--HDVLLAGFPCQPF 79
          + I +   +V     PCQP+
Sbjct: 68 EWIEEKRANVWFMSPPCQPY 87


>gi|331655761|ref|ZP_08356750.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
 gi|331046535|gb|EGI18624.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M718]
          Length = 754

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI  +        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPVWFAEIESFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVGGTPCQAFSIAG 85


>gi|46048774|ref|NP_996835.1| DNA (cytosine-5)-methyltransferase 1 [Gallus gallus]
 gi|12230343|sp|Q92072|DNMT1_CHICK RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=DNA methyltransferase GgaI; Short=DNA MTase
            GgaI; Short=M.GgaI; AltName: Full=MCMT
 gi|1109610|dbj|BAA07867.1| DNA (cytosine-5-)-methyltransferase [Gallus gallus]
 gi|1096715|prf||2112268A DNA methyltransferase
          Length = 1537

 Score = 67.9 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1054 LRTLDVFSGCGGLSEGFHQAGVS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1110

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1111 KLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1145


>gi|323969240|gb|EGB64542.1| DNA adenine methylase [Escherichia coli TA007]
          Length = 754

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVGGTPCQAFSIAG 85


>gi|291529734|emb|CBK95320.1| DNA-methyltransferase (dcm) [Eubacterium rectale M104/1]
          Length = 339

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LKI +LF GIG  R  L+       ++     EI PY+V  Y + F N     D+ K   
Sbjct: 12 LKILELFGGIGAPRKALQNLG--YQLKSIDYVEILPYAVMAYNSIFDNGYKPQDVTKWNL 69

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
              D DVL+ G PCQ +S+ G
Sbjct: 70 ----DPDVLIHGSPCQDWSKNG 87


>gi|2558956|gb|AAC49849.1| Masc1 [Ascobolus immersus]
          Length = 537

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----GDIA 57
               D FCG GG+ L   Q      +E  ++ ++NP +   Y+ NFPNT  F        
Sbjct: 227 YTFGDTFCGGGGVSLGARQA----GLEVKWAFDMNPNAGANYRRNFPNTDFFLAEAEQFI 282

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQA 82
           ++        D+L    PCQ FS+A
Sbjct: 283 QLSVGISQHVDILHLSPPCQTFSRA 307


>gi|332852917|ref|XP_512361.3| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 11 [Pan
            troglodytes]
          Length = 1632

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1155 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1210

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1211 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1246


>gi|332253285|ref|XP_003275776.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 1 [Nomascus
           leucogenys]
 gi|332253287|ref|XP_003275777.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 2 [Nomascus
           leucogenys]
 gi|332253289|ref|XP_003275778.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 3 [Nomascus
           leucogenys]
          Length = 1347

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 870 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 925

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 926 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 961


>gi|315583650|pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
           Dna
          Length = 956

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 495 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 550

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 551 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 586


>gi|297703536|ref|XP_002828696.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Pongo abelii]
          Length = 1664

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1187 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1242

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1243 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1278


>gi|193783730|dbj|BAG53712.1| unnamed protein product [Homo sapiens]
          Length = 540

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 63  LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 118

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 119 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 154


>gi|168277642|dbj|BAG10799.1| DNA (cytosine-5)-methyltransferase 1 [synthetic construct]
          Length = 1498

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1018 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1073

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1074 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1109


>gi|119604485|gb|EAW84079.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Homo sapiens]
 gi|119604486|gb|EAW84080.1| DNA (cytosine-5-)-methyltransferase 1, isoform CRA_a [Homo sapiens]
          Length = 1678

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1201 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1256

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1257 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1292


>gi|195927037|ref|NP_001124295.1| DNA (cytosine-5)-methyltransferase 1 isoform a [Homo sapiens]
 gi|116496659|gb|AAI26228.1| DNMT1 protein [Homo sapiens]
 gi|219521538|gb|AAI44094.1| DNA (cytosine-5-)-methyltransferase 1 [Homo sapiens]
          Length = 1632

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1155 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1210

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1211 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1246


>gi|114675302|ref|XP_001163722.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 1 isoform 9 [Pan
            troglodytes]
          Length = 1671

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1194 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1249

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1250 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1285


>gi|114675322|ref|XP_001163364.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 1 isoform 1 [Pan
            troglodytes]
          Length = 1502

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1194 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1249

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1250 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1285


>gi|114675312|ref|XP_001163590.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 6 [Pan
            troglodytes]
          Length = 1519

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1042 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1097

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1098 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1133


>gi|114675304|ref|XP_001163764.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 isoform 10 [Pan
            troglodytes]
          Length = 1678

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1201 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1256

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1257 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1292


>gi|114675320|ref|XP_001163398.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 1 isoform 2 [Pan
            troglodytes]
          Length = 1546

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1194 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1249

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1250 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1285


>gi|114675318|ref|XP_001163512.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 1 isoform 4 [Pan
            troglodytes]
          Length = 1632

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1194 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1249

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1250 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1285


>gi|114675308|ref|XP_001163659.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase (EC
            2.1.1.37) - human isoform 7 [Pan troglodytes]
 gi|114675310|ref|XP_001163694.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase (EC
            2.1.1.37) - human isoform 8 [Pan troglodytes]
          Length = 1495

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1018 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1073

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1074 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1109


>gi|114675316|ref|XP_001163475.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase (EC
           2.1.1.37) - human isoform 3 [Pan troglodytes]
          Length = 1036

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 559 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 614

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 615 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 650


>gi|67970373|dbj|BAE01529.1| unnamed protein product [Macaca fascicularis]
          Length = 493

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 238 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 293

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 294 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 329


>gi|62088406|dbj|BAD92650.1| DNA (cytosine-5-)-methyltransferase 1 variant [Homo sapiens]
          Length = 1606

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1126 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1181

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1182 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1217


>gi|62204780|gb|AAH92517.1| DNMT1 protein [Homo sapiens]
          Length = 1511

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1034 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1089

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1090 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1125


>gi|4503351|ref|NP_001370.1| DNA (cytosine-5)-methyltransferase 1 isoform b [Homo sapiens]
 gi|12231019|sp|P26358|DNMT1_HUMAN RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1;
            AltName: Full=CXXC-type zinc finger protein 9; AltName:
            Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI;
            Short=M.HsaI; AltName: Full=MCMT
 gi|1632819|emb|CAA45219.1| DNA (cytosine-5-)-methyltransferase [Homo sapiens]
          Length = 1616

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 1139 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 1194

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D ++L  G PCQ FS
Sbjct: 1195 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 1230


>gi|304399150|ref|ZP_07381018.1| DNA adenine methylase [Pantoea sp. aB]
 gi|304353390|gb|EFM17769.1| DNA adenine methylase [Pantoea sp. aB]
          Length = 808

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI- 59
          M+    +  GI          +     +  + +EI  +        FP     GD+  I 
Sbjct: 1  MITYGSVCSGI----EAASVAWEGLGWKAAWFAEIEKFPAAVLAHRFPAVPNLGDMTTIA 56

Query: 60 ---KTQDIPDHDVLLAGFPCQPFSQAG 83
             +   IP   V++ G PCQ FS AG
Sbjct: 57 AGVRAGSIPAPAVMVGGTPCQAFSIAG 83


>gi|326483421|gb|EGE07431.1| C-5 cytosine methyltransferase DmtA [Trichophyton equinum CBS
           127.97]
          Length = 584

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
               D FCG GG+    +Q      ++  ++ +    ++ +Y+ANFP+ L    ++A+  
Sbjct: 278 YTFGDGFCGAGGVSRGAQQA----GLKLLWAFDKWESAINSYRANFPSCLAEHSEVAQFL 333

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
           T  +P     DV+    PCQPFS A
Sbjct: 334 TS-LPREILVDVMHVSPPCQPFSPA 357


>gi|148555450|ref|YP_001263032.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
 gi|148500640|gb|ABQ68894.1| DNA-cytosine methyltransferase [Sphingomonas wittichii RW1]
          Length = 400

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 24/96 (25%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI- 56
           +   F G GG+ L  E        +   + EIN    KT + N      F   +  GD+ 
Sbjct: 74  LVSFFTGCGGMDLGFES----VGYQHVAAFEINELFCKTLRRNRPEWKVFGPPVHSGDVS 129

Query: 57  ----------AKIKTQDIPDHDVLLAGFPCQPFSQA 82
                       IK    P   V   G PCQPFS A
Sbjct: 130 MFENVAAALRTVIKA---PFEGVFAGGPPCQPFSIA 162


>gi|152982884|ref|YP_001351698.1| site-specific DNA methylase [Janthinobacterium sp. Marseille]
 gi|151282961|gb|ABR91371.1| Site-specific DNA methylase [Janthinobacterium sp. Marseille]
          Length = 425

 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKT 61
             + F G G  R  L          C F+++ +    + Y+ N+     L+  D+ KI T
Sbjct: 48  FFEFFAGGGMARAGL-----GERWNCQFANDNSAMKGQVYRKNWHGGPELVIEDVNKITT 102

Query: 62  QDIPDH-DVLLAGFPCQPFSQAG 83
           + +    D++ A FPCQ  S AG
Sbjct: 103 RHLSGTPDLIWASFPCQDLSLAG 125


>gi|329937998|ref|ZP_08287480.1| putative 5-methylcytosine methyltransferase [Streptomyces
          griseoaurantiacus M045]
 gi|329302955|gb|EGG46844.1| putative 5-methylcytosine methyltransferase [Streptomyces
          griseoaurantiacus M045]
          Length = 426

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIKTQ 62
          + DLF G GG+        +   +      E +  +  T Y A      +  D++ ++ +
Sbjct: 16 VLDLFAGPGGLD----SACHRLGIPSLG-IEWDKSACLTRYAA--GLDTLHADVSAVRRE 68

Query: 63 DI----PDHDVLLAGFPCQPFSQAG 83
                P+ +VL  G PCQ +S AG
Sbjct: 69 SFESLPPEINVLAGGPPCQTYSVAG 93


>gi|300723947|ref|YP_003713260.1| hypothetical protein XNC1_3088 [Xenorhabdus nematophila ATCC
          19061]
 gi|297630477|emb|CBJ91142.1| Dmt (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 389

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
              +  GI          +    +   + SEI  +  +  + ++P  L  GD+ +I   
Sbjct: 17 TFGSVCSGI----EAASVAWEPLGLFPSWFSEIEKFPSEVLRYHWPYVLNLGDMTQISAL 72

Query: 62 -----QDIPDHDVLLAGFPCQPFSQAG 83
                D P  D+L+ G PCQ FS AG
Sbjct: 73 IAENQADAP--DILVGGTPCQAFSIAG 97


>gi|18312788|ref|NP_559455.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
 gi|18160272|gb|AAL63637.1| C-5 cytosine-specific DNA methylase [Pyrobaculum aerophilum str.
          IM2]
          Length = 314

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI----PDHDVLLAGFPCQPF 79
             +   + +I+  +V+TY AN   T+I   DI  I   D+     D DV++   PC+PF
Sbjct: 21 AGFKIAVAVDIDRDAVRTYSANHRYTIIIQEDIRYIDYGDLLKYAGDVDVIIGSPPCEPF 80

Query: 80 SQA 82
          + A
Sbjct: 81 TAA 83


>gi|62946466|ref|YP_227670.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
 gi|17134568|dbj|BAB77127.1| site-specific DNA-methyltransferase [Nostoc sp. PCC 7120]
          Length = 253

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 1  MLKITDLFCGIGGI-RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M  I  LF GIGG+    +         +     EI+PYS    +   P T I  DI   
Sbjct: 1  MKSILSLFSGIGGLCHHGIAAAGLSHKFQVKQFVEISPYSQSRLRHEQPQTPIHSDITTY 60

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D++  G PCQ  S AG
Sbjct: 61 H-CHRGQFDIVAGGLPCQGTSNAG 83


>gi|134296266|ref|YP_001120001.1| DNA-cytosine methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139423|gb|ABO55166.1| DNA-cytosine methyltransferase [Burkholderia vietnamiensis G4]
          Length = 384

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L   + F G       L            ++++++     TY AN        G I  ++
Sbjct: 16 LSYLEFFAG-----SGLVAEGLRGLFRPVWANDLSEKKAATYTANHGARHFHLGSIENVE 70

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
             +P  D+  A FPCQ  S AG
Sbjct: 71 GAVLPVADMTWASFPCQDLSLAG 93


>gi|332306793|ref|YP_004434644.1| DNA-cytosine methyltransferase [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332174122|gb|AEE23376.1| DNA-cytosine methyltransferase [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 729

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL----IFGDIAK 58
             D F GIG + + L  T  H       S + +      Y+ NF           DI +
Sbjct: 4  TFVDFFAGIGLVEIGLTNTGWHH----LLSVDYSELKRDVYKLNFGKNHAEFYRCADIFE 59

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          +   ++P+  +  A FPC   S AG
Sbjct: 60 VDGTEVPESFLAHASFPCTDVSSAG 84


>gi|298486609|ref|ZP_07004667.1| DNA methyltransferase [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
 gi|298158824|gb|EFH99886.1| DNA methyltransferase [Pseudomonas savastanoi pv. savastanoi
          NCPPB 3335]
          Length = 589

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +E+ P+       ++P T   GD+ K   
Sbjct: 10 LQYGSVCSGI----EAATAAWHPLGMEPVWFAEVEPFPSAVLAHHYPRTPNLGDMTKLGA 65

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ FS AG
Sbjct: 66 LVLAGKIKAPDVLVGGTPCQAFSVAG 91


>gi|114675314|ref|XP_001163550.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase (EC
           2.1.1.37) - human isoform 5 [Pan troglodytes]
          Length = 1280

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 803 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 858

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 859 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 894


>gi|323186482|gb|EFZ71828.1| DNA adenine methylase family protein [Escherichia coli 1357]
          Length = 754

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAQKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVGGTPCQAFSIAG 85


>gi|6684525|gb|AAF23609.1| DNA (cytosine-5)-methyltransferase [Homo sapiens]
          Length = 1280

 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 803 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 858

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 859 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 894


>gi|300957407|ref|ZP_07169621.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300315842|gb|EFJ65626.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 175-1]
          Length = 343

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  DLFCG GG+   L+Q+     ++     +I       ++ N     I  DI  +K 
Sbjct: 3  IKAVDLFCGAGGLTHGLKQS----GIDVVAGYDIEETCRFAFEFNNNAVFINQDITVLKG 58

Query: 62 QDI------PDHDVLLAGFPCQPFSQAG 83
          + I       D  +L    PCQPFS  G
Sbjct: 59 EQILSHFKDSDVTILAGCAPCQPFSTYG 86


>gi|256821199|ref|YP_003142398.1| DNA-cytosine methyltransferase [Anaerococcus prevotii DSM 20548]
 gi|256799179|gb|ACV29833.1| DNA-cytosine methyltransferase [Anaerococcus prevotii DSM 20548]
          Length = 321

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEEYKAKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|83859006|ref|ZP_00952527.1| C-5 cytosine-specific DNA methylase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852453|gb|EAP90306.1| C-5 cytosine-specific DNA methylase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 363

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            + DLFCG GG+        +    +     + +      ++ N     I  D+AK+   
Sbjct: 23  TVVDLFCGAGGLSHGF----HSEGFDIVGGIDTDEACRYAFEHNNDAPFIRRDVAKLTGP 78

Query: 63  DIP------DHDVLLAGFPCQPFS 80
           +I          VL+   PCQPFS
Sbjct: 79  EIEGLFIPGKRRVLVGCAPCQPFS 102


>gi|320180750|gb|EFW55676.1| DNA-cytosine methyltransferase [Shigella boydii ATCC 9905]
          Length = 340

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          K+ DLFCG GG+   L+       ++     ++       Y+ N  +  I  DIAK+  +
Sbjct: 4  KVIDLFCGAGGLTHGLQLA----GLDVVAGIDLEGECRFPYERNNKSKFIEQDIAKVTKE 59

Query: 63 DI------PDHDVLLAGFPCQPFS 80
          ++          VL    PCQPFS
Sbjct: 60 ELLRLYGDASVKVLAGCAPCQPFS 83


>gi|254875583|ref|ZP_05248293.1| predicted protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254841582|gb|EET20018.1| predicted protein [Francisella tularensis subsp. tularensis
          MA00-2987]
          Length = 72

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
           F G GG+ L  E+       +  +++E +    +TY+ N PNT++    I  I   + 
Sbjct: 13 FFSGAGGLDLGFERA----GFDIIWANEFDKEIWETYEKNHPNTILDRRSIVNIHESEF 67


>gi|307067513|ref|YP_003876479.1| site-specific DNA methylase [Streptococcus pneumoniae AP200]
 gi|306409050|gb|ADM84477.1| Site-specific DNA methylase [Streptococcus pneumoniae AP200]
          Length = 321

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        + + K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKAKSVVRYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|297276085|ref|XP_001104704.2| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Macaca mulatta]
          Length = 1280

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       +  ++ E  +P +   ++ N P + +F       
Sbjct: 803 LRTLDVFSGCGGLSEGFHQAGIS---DTLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNIL 858

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+    + Q +P   D ++L  G PCQ FS
Sbjct: 859 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFS 894


>gi|49476997|ref|YP_035183.1| modification methylase DdeI; cytosine-specific methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49328553|gb|AAT59199.1| modification methylase DdeI; possible cytosine-specific
           methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 450

 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 39/114 (34%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----------------- 47
            DLF G GG+   L+       ++   + E+N  + +TY AN                  
Sbjct: 9   IDLFSGPGGLTTGLKLA----GIKPLIAVEMNNETAETYAANHHVDLLKLEEYLQHKNTY 64

Query: 48  --------PNTLIFGDIAKIKTQDIPD----------HDVLLAGFPCQPFSQAG 83
                    + LI GD+ ++    I +           DV+  G PC+ +S AG
Sbjct: 65  EHIFKPSDKSVLILGDVREVTDNLIREILLKRFSKESVDVITGGPPCESYSMAG 118


>gi|313886989|ref|ZP_07820689.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312923515|gb|EFR34324.1| DNA (cytosine-5-)-methyltransferase [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 349

 Score = 67.5 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCGIGG+   L+       +E     +++      Y+ N     I+ DI  +   +
Sbjct: 5  VVDLFCGIGGLSYGLKTA----GLEVLAGYDLDQTCAFAYEKNNNAQFIYKDIRSVCGGE 60

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  VL    PCQPFS
Sbjct: 61 VSSLLDGVDIKVLAGCAPCQPFS 83


>gi|312964273|ref|ZP_07778577.1| DNA adenine methylase family protein [Escherichia coli 2362-75]
 gi|312290986|gb|EFR18860.1| DNA adenine methylase family protein [Escherichia coli 2362-75]
          Length = 672

 Score = 67.5 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVGGTPCQAFSIAG 85


>gi|331646824|ref|ZP_08347925.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
 gi|331044366|gb|EGI16495.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli M605]
          Length = 862

 Score = 67.5 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVGGTPCQAFSIAG 85


>gi|209875617|ref|XP_002139251.1| DNA (cytosine-5)-methyltransferase domain-containing protein
          [Cryptosporidium muris RN66]
 gi|209554857|gb|EEA04902.1| DNA (cytosine-5)-methyltransferase domain-containing protein
          [Cryptosporidium muris RN66]
          Length = 422

 Score = 67.5 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-------FNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          ML +T L  GIGG+ L L+             +++   + E+N      Y+ +F +T + 
Sbjct: 1  MLNLTSL-DGIGGLHLSLKYAIEKLVEHGQAIDIKVIKAFELNENCNNIYKRHFKDTQVC 59

Query: 54 -GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             I  +   DIP  ++ L G PCQPF++ G
Sbjct: 60 TKSIESLNIDDIPKANIWLLG-PCQPFTRGG 89


>gi|323356693|ref|YP_004223089.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
 gi|323273064|dbj|BAJ73209.1| site-specific DNA methylase [Microbacterium testaceum StLB037]
          Length = 360

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+ L L+Q      ++     +++P     Y+ N     I  D+  +K  D+
Sbjct: 11 IDLFCGAGGLSLGLKQA----GIDVVAGIDLDPACQYPYEQNLKAQFILKDVGDVKGVDL 66

Query: 65 ------PDHDVLLAGFPCQPFS 80
                    +L    PCQPFS
Sbjct: 67 QALWPEGKLRLLAGCAPCQPFS 88


>gi|320333452|ref|YP_004170163.1| DNA-cytosine methyltransferase [Deinococcus maricopensis DSM
          21211]
 gi|319754741|gb|ADV66498.1| DNA-cytosine methyltransferase [Deinococcus maricopensis DSM
          21211]
          Length = 326

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L   ++  G GG  L LE        E     E + ++  T + N P   ++ GD+    
Sbjct: 7  LTSLEICAGAGGQALGLEMA----GYEHAALVEFDAHACNTLRLNRPEWNVVEGDLRAFN 62

Query: 61 TQDIP---DHDVLLAGFPCQPFSQAG 83
             +P      +L  G PCQPFS  G
Sbjct: 63 G--LPYRGQITLLAGGVPCQPFSHGG 86


>gi|119355930|ref|YP_910574.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
          266]
 gi|119353279|gb|ABL64150.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides DSM
          266]
          Length = 371

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIK 60
          +++ D F G GG  +   +      ++   + +    ++ TYQ NF    +  D I  + 
Sbjct: 12 IRVYDFFSGCGGTSVGFGRA----GIQHALAVDSCSDAISTYQKNFIGVPVITDPIETLN 67

Query: 61 TQDI-------PDHDVLLAGFPCQPFS 80
             I       P+  +     PCQPF+
Sbjct: 68 VDRIQNYFSHNPEVKLFCGCAPCQPFT 94


>gi|8132067|gb|AAF73200.1|AF152342_1 DNA-(cytosine-5)-methyltransferase [Xiphophorus maculatus x
            Xiphophorus helleri]
          Length = 1503

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
             +  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1025 YRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1081

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1082 KLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1116


>gi|312890850|ref|ZP_07750379.1| DNA-cytosine methyltransferase [Mucilaginibacter paludis DSM
          18603]
 gi|311296633|gb|EFQ73773.1| DNA-cytosine methyltransferase [Mucilaginibacter paludis DSM
          18603]
          Length = 336

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          +    ++  G GG  + L+Q       E     E+   + +T + N P   +I  D+   
Sbjct: 13 IYTSIEICAGAGGQAIGLDQA----GFEHLALVELENLACQTLRFNKPQWNVIEKDVRNF 68

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
                  D+   G PC PFS AG
Sbjct: 69 SATKYEGVDLFAGGVPCPPFSIAG 92


>gi|91784577|ref|YP_559783.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans
          LB400]
 gi|40019222|emb|CAE92946.1| putative DNA methyltransferase [Pseudomonas putida]
 gi|91688531|gb|ABE31731.1| C-5 cytosine-specific DNA methylase [Burkholderia xenovorans
          LB400]
          Length = 533

 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P+    GD+     +++   
Sbjct: 24 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHRYPHVPNLGDMTAIARQVRAGT 79

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 80 VPAPDILVGGTPCQSFSVAG 99


>gi|295395397|ref|ZP_06805596.1| modification methylase NaeI [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294971719|gb|EFG47595.1| modification methylase NaeI [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 355

 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI- 59
          L   ++  G GG  L LEQ       E     EI+  +V T + N P   +   D+    
Sbjct: 3  LTSVEICAGAGGQALGLEQA----GFEHTCLVEIDSDAVATLRMNRPRWNVHQADLLNWQ 58

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
            + +   D+L  G PC PFS AG
Sbjct: 59 PPKSLERPDLLAGGVPCPPFSLAG 82


>gi|114330146|ref|YP_746368.1| DNA-cytosine methyltransferase [Nitrosomonas eutropha C91]
 gi|114307160|gb|ABI58403.1| DNA-cytosine methyltransferase [Nitrosomonas eutropha C91]
          Length = 497

 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+   +  GI      +   +  +  +  + SEI P+        +P+    GD+ +I  
Sbjct: 10 LQYGSVCSGI----EAVSLAWQPQGPQAAWFSEIEPFPCAVLAHRYPDVPNLGDMTQIAE 65

Query: 62 QDIPDH----DVLLAGFPCQPFSQAG 83
          Q         D+L+ G PCQ FS AG
Sbjct: 66 QVRAGLVVAPDILVGGTPCQTFSIAG 91


>gi|256828696|ref|YP_003157424.1| C-5 cytosine-specific DNA methylase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577872|gb|ACU89008.1| C-5 cytosine-specific DNA methylase [Desulfomicrobium baculatum DSM
           4028]
          Length = 397

 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---PYS-------VKTYQANFPNTL 51
             + DLF G GG+       F H   +   +++     P +         TYQ N     
Sbjct: 4   FTVIDLFSGAGGMSYGF---FKHEAFKIIAAADAELGKPSAGNGKLQCNTTYQKNIGINP 60

Query: 52  IFGDIAKIKTQDIP---------DHDVLLAGFPCQPFSQA 82
           +  D++KI  +++            ++L    PC  FS+A
Sbjct: 61  VNCDLSKIDPKNLKKILKLNNNDKVNILSCCPPCTGFSRA 100


>gi|223995915|ref|XP_002287631.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976747|gb|EED95074.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 319

 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 27/83 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               ++F GIGG  + LE                              + I GDI ++  
Sbjct: 194 FSYAEMFAGIGGFGVALEALGG--------------------------SWIHGDIYEVPD 227

Query: 62  QDIP-DHDVLLAGFPCQPFSQAG 83
              P D D+L+AGFPCQPFS  G
Sbjct: 228 SAFPKDLDLLVAGFPCQPFSTLG 250


>gi|330991509|ref|ZP_08315460.1| Modification methylase DdeI [Gluconacetobacter sp. SXCC-1]
 gi|329761528|gb|EGG78021.1| Modification methylase DdeI [Gluconacetobacter sp. SXCC-1]
          Length = 449

 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 23/98 (23%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---------- 54
            DLF G GG+ L L               E +P++ ++Y  N  +    G          
Sbjct: 35  IDLFAGCGGMSLGLHMA----GFRGIMGIEAHPHAFESYCHNLIDNPSIGMDWPAWLPLG 90

Query: 55  --DIAKIKTQDIP-------DHDVLLAGFPCQPFSQAG 83
             ++  +               D+L  G PCQ FS  G
Sbjct: 91  PNNVVDLAANYTSQLAAMAGSVDLLAGGPPCQGFSTNG 128


>gi|134046699|ref|YP_001098184.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C5]
 gi|132664324|gb|ABO35970.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C5]
          Length = 366

 Score = 67.1 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 55/132 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------ 49
           +   DLFCG GG      +       +   + E++  +  +Y  N+              
Sbjct: 12  MNFIDLFCGCGGFSRGFVE----MGFKPLLAIELDENAANSYALNYNGMVFEKKLNEFLE 67

Query: 50  ------------------------------TLIFGDIAKIKTQDI---------PDHDVL 70
                                          +I  DI +I ++ I            D++
Sbjct: 68  KEIYFKLEDFLVQNDIEDFKKSNNYENLNPVVINEDIREINSKYITNKIKNTSDSKIDLV 127

Query: 71  LAGFPCQPFSQA 82
           + G PC+ ++ A
Sbjct: 128 IGGPPCEGYTGA 139


>gi|124486003|ref|YP_001030619.1| hypothetical protein Mlab_1183 [Methanocorpusculum labreanum Z]
 gi|124363544|gb|ABN07352.1| DNA-cytosine methyltransferase [Methanocorpusculum labreanum Z]
          Length = 352

 Score = 66.7 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 14/86 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT--- 61
           D FCG GGI   L        ++     +I+P   +TY+ N  N  +  DI  I     
Sbjct: 12 IDFFCGGGGITKGLSDA----GIKVLGGIDISPDLKRTYEENNHNKFVNFDIRTISGSNI 67

Query: 62 -QDIPDHD------VLLAGFPCQPFS 80
           ++ P+ +      +L    PCQPFS
Sbjct: 68 YKEFPEIEGDEDNLLLAGCAPCQPFS 93


>gi|157165013|ref|YP_001467403.1| glutathionylspermidine synthase family protein [Campylobacter
          concisus 13826]
 gi|112801055|gb|EAT98399.1| conserved hypothetical protein [Campylobacter concisus 13826]
 gi|158605014|gb|ABW74816.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 203

 Score = 66.7 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +KI +LF GIGG RL  +       V    + E +P   K Y   +PN  +I GD     
Sbjct: 1  MKILNLFAGIGGNRLLWDNVLPGVKVT---AVEFDPEIAKAYAKRYPNDNVIVGDAWDYA 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
           ++  D D + A  PCQ  S+
Sbjct: 58 AKNYLDFDFIWASPPCQTHSR 78


>gi|296139305|ref|YP_003646548.1| DNA-cytosine methyltransferase [Tsukamurella paurometabola DSM
          20162]
 gi|296027439|gb|ADG78209.1| DNA-cytosine methyltransferase [Tsukamurella paurometabola DSM
          20162]
          Length = 385

 Score = 66.7 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAK 58
          +  + F GIG   + LE+     +++  +S++I+P     Y+ +F     +  I GD+A 
Sbjct: 14 RAAEFFAGIGLAGIGLEKA----DIKVAWSNDISPVKYALYEKHFGEREGHRYIVGDLAT 69

Query: 59 IKTQDIP-DHDVLLAGFPCQPFSQAG 83
          ++    P D DV  A FPC   S AG
Sbjct: 70 LEASQDPIDIDVAWASFPCTDLSVAG 95


>gi|294637303|ref|ZP_06715601.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC
          23685]
 gi|291089511|gb|EFE22072.1| DNA (cytosine-5-)-methyltransferase [Edwardsiella tarda ATCC
          23685]
          Length = 722

 Score = 66.7 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++   +  GI          +        + +EI  +        +P+ +  GD+ KI  
Sbjct: 1  MRYGSVCSGI----EAASVAWEPLGWTPAWFAEIEEFPSAVLAQRWPSVVNLGDMTKIAA 56

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
               D+   DVL+ G PCQ FS AG
Sbjct: 57 AVRAGDVEAPDVLVGGTPCQAFSVAG 82


>gi|26990617|ref|NP_746042.1| DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
 gi|24985601|gb|AAN69506.1|AE016584_14 DNA-cytosine methyltransferase [Pseudomonas putida KT2440]
          Length = 553

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    +  GI          ++       + +EI P+       ++P T   GD+ ++  
Sbjct: 3  ITYGSVCSGI----EAATVAWHPLGWRAEWYAEIEPFPCAVLAHHYPATPNHGDMTRLAA 58

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
                IP  +VL+ G PCQ FS AG
Sbjct: 59 MVLSGKIPAPEVLVGGTPCQAFSVAG 84


>gi|86131659|ref|ZP_01050257.1| DNA (cytosine-5-)-methyltransferase [Dokdonia donghaensis MED134]
 gi|85818104|gb|EAQ39272.1| DNA (cytosine-5-)-methyltransferase [Dokdonia donghaensis MED134]
          Length = 409

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 50/128 (39%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-------YQAN-------- 46
           L   DLF G GG+     +       +     EI+  +  T       ++ N        
Sbjct: 4   LNFIDLFSGAGGLSEGFIKA----GFKPIAHVEIDKKACDTLETRLIYHKLNSENKTEKY 59

Query: 47  ----------------FPNTLIFGDIAKIKT---------QDI------PDHDVLLAGFP 75
                           F N+ +   +  I             I         D+++ G P
Sbjct: 60  YDYISEKITREEFIKTFSNSELSNSVINIPIGGKNNKIIFDKIDTLAKGKQIDLIIGGPP 119

Query: 76  CQPFSQAG 83
           CQ +S  G
Sbjct: 120 CQAYSLVG 127


>gi|253991772|ref|YP_003043128.1| cytosine-specific DNA methyltransferase [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|211638547|emb|CAR67168.1| cytosine-specific dna methyltransferase (ec 2.1.1.37)
          [Photorhabdus asymbiotica subsp. asymbiotica ATCC
          43949]
 gi|253783222|emb|CAQ86387.1| cytosine-specific DNA methyltransferase [Photorhabdus
          asymbiotica]
          Length = 167

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          ++   +  GI      +   +    +   + SE   +     Q ++P     GD+A+I  
Sbjct: 3  MRFGSVCSGI----EAVSVAWEPLGMSPAWFSETEKFPSAVLQYHWPYVRNLGDMAEIPA 58

Query: 61 --TQDIPDH-DVLLAGFPCQPFSQAG 83
            T+++ D  D+L+ G PCQ FS AG
Sbjct: 59 MITENLADALDILVGGTPCQAFSIAG 84


>gi|33323568|gb|AAQ07538.1|AF503408_62 Dam [Enterobacteria phage P7]
          Length = 672

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK----IKTQD 63
            GI          +    +   + +EI P+        +P+    GD+ K    ++  +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAQKVQAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IEAPDVLVGGTPCQAFSIAG 85


>gi|270293678|ref|ZP_06199880.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
 gi|270275145|gb|EFA21005.1| cytosine-specific methyltransferase [Bacteroides sp. D20]
          Length = 361

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHD----VLLAGFPCQPF 79
            ++  ++ E+NP++ K+++ N     +I GDI  +K  D  + D    +++ G PCQ F
Sbjct: 22 AGIKVRYAIEVNPHAAKSFELNHKGAKVICGDIRDVKATDFLNKDEEVFIIMGGPPCQGF 81

Query: 80 SQ 81
          S 
Sbjct: 82 SM 83


>gi|153933427|ref|YP_001385281.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153933974|ref|YP_001384769.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153935154|ref|YP_001386762.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|153935271|ref|YP_001386815.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|153937696|ref|YP_001388073.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152929471|gb|ABS34971.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152930018|gb|ABS35518.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|152931068|gb|ABS36567.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152931185|gb|ABS36684.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
 gi|152933610|gb|ABS39109.1| DNA-cytosine methyltransferase family protein [Clostridium
          botulinum A str. Hall]
          Length = 315

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  L        V+     EI+  +V++Y A F   L +   + + 
Sbjct: 1  MIQILELFGGIGAPRKALINLG--VPVKAIDYVEIDEKAVRSYNAIFHKDLAYKTQSVVG 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
              P  D+L+ G PCQ FS AG
Sbjct: 59 YNLKP--DILIHGSPCQDFSIAG 79


>gi|51245886|ref|YP_065770.1| modification methylase [Desulfotalea psychrophila LSv54]
 gi|50876923|emb|CAG36763.1| probable modification methylase [Desulfotalea psychrophila LSv54]
          Length = 360

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 17/99 (17%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTF------NHRNVECF--FSSEINPYSVKTYQANFPN-- 49
          +K    +LFCG GGI L  +         N+ +      ++++ +  + +TY  N  N  
Sbjct: 1  MKFELAELFCGPGGIALGAQLAGVVYNNRNNESFSIAPSWATDYDEATCRTYALNIHNSN 60

Query: 50 -----TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
               T++  D+ ++  + +     L  GFPC  FS  G
Sbjct: 61 ELDLDTVVCQDVRELDIEALRPRQALAFGFPCNDFSSVG 99


>gi|2956677|emb|CAB09661.1| DNA-C5-methyltransferase [Ascobolus immersus]
          Length = 1336

 Score = 66.7 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 29/105 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           LK  D+F G GG+ L L+ +     V+  ++ E  P +  T   NFP+  +F        
Sbjct: 784 LKGLDIFAGCGGLTLGLDLSGA---VDTKWAIEFAPSAANTLALNFPDAQVFNQCANVLL 840

Query: 55  ------------DIA-KIKTQDIPD------HDVLLAGFPCQPFS 80
                       DI   ++ + +PD       D +  G PCQ FS
Sbjct: 841 SRAIQSEDEGSLDIEYDLQGRVLPDLPKKGEVDFIYGGPPCQGFS 885


>gi|83309461|ref|YP_419725.1| site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82944302|dbj|BAE49166.1| Site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 517

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 21  TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPF 79
            +        F +EI P+       ++P     GD+  I  +      DVL+ G PCQ F
Sbjct: 40  AWEPLGWRPAFFAEIEPFPSAVLAHHYPAVPNLGDMTAIDGRAWRGKIDVLVGGTPCQAF 99

Query: 80  SQAG 83
           S AG
Sbjct: 100 SVAG 103


>gi|145250405|ref|XP_001396716.1| C-5 cytosine methyltransferase DmtA [Aspergillus niger CBS 513.88]
 gi|134082235|emb|CAL00990.1| unnamed protein product [Aspergillus niger]
          Length = 613

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               D FCG GG+     +      +   ++ + + +++ TY+ NF +      D+    
Sbjct: 306 YTFGDGFCGAGGVSCGALKA----GLRPTWAFDNSRHAINTYRLNFRDAECEDSDVFTFL 361

Query: 61  TQD--IPDHDVLLAGFPCQPFSQA 82
           T D      DV     PCQ FS A
Sbjct: 362 TNDYAFLKVDVTHGSPPCQTFSPA 385


>gi|226945654|ref|YP_002800727.1| C-5 cytosine-specific DNA methylase [Azotobacter vinelandii DJ]
 gi|226720581|gb|ACO79752.1| C-5 cytosine-specific DNA methylase [Azotobacter vinelandii DJ]
          Length = 501

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 23/100 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTL-------IFG 54
           K+ +L  G GG+ L L+        E     E N  +  TY  NF P          I  
Sbjct: 30  KVLELCSGCGGLSLGLKTA----GFELAAHVESNDEANATYALNFAPENPAQTKQWAISR 85

Query: 55  D---------IAKIKTQDIPD--HDVLLAGFPCQPFSQAG 83
           D         I        P    DVL AG PCQ F++ G
Sbjct: 86  DMVAQSMSDLITDFGLAGGPREAFDVLAAGLPCQAFARIG 125


>gi|30523050|gb|AAP31838.1| AsiSI methylase [Arthrobacter sp. S]
          Length = 390

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKT 61
           +LF G GG+   L         +     + N  S+  Y  N     +  +  D++ ++ 
Sbjct: 7  VELFAGCGGLSTGLLDA----GYDVRLGVDNNAPSLVAYDYNHAYRGSKSLLRDVSALRG 62

Query: 62 QDIPDH------DVLLAGFPCQPFSQAG 83
           ++ +       DVL  G PCQPFS AG
Sbjct: 63 PELLEAAGVDSIDVLSGGPPCQPFSIAG 90


>gi|156358701|ref|XP_001624654.1| predicted protein [Nematostella vectensis]
 gi|156211447|gb|EDO32554.1| predicted protein [Nematostella vectensis]
          Length = 226

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ + + GIGG+   L+     +N E   + EI+  +   Y  NFP T I+     I+ 
Sbjct: 7  FRVVEFYSGIGGMHYALK--GCKKNAEVVAALEISTTANTVYGHNFPTTKIWN--CNIEV 62

Query: 62 QDIPDHDV-----LLAGFPCQPFSQAG 83
           ++ +        ++   PCQP++  G
Sbjct: 63 CELCNVTTMPAIYMVMSPPCQPYTWVG 89


>gi|255081819|ref|XP_002508128.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226523404|gb|ACO69386.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 404

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+  + +CG+GG+   L +     + +   + +INP     Y+ NF       +I  +  
Sbjct: 31  LRAVEFYCGVGGLHYSLLRA--RPDAKVVAAFDINPNGNDVYEHNFGVRPSQKNIYGLPV 88

Query: 62  QDIPDHD--VLLAGFPCQPFSQAG 83
                 D  + L   PCQPF++ G
Sbjct: 89  ASFDRLDAGLWLLSPPCQPFTRQG 112


>gi|56385094|gb|AAV85978.1| 5' cytosine DNA methyl transferase-like protein [Pristionchus
          pacificus]
          Length = 313

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKT 61
          K+ + +CGIGGI   L++T          + +IN  +   Y+ NFP+T +   +I  +  
Sbjct: 11 KVLEFYCGIGGIHFALKRT--SIPFHIAAAFDINTTTNVIYRHNFPSTKLKESNIQGVSV 68

Query: 62 QDIPD--HDVLLAGFPCQPFSQAG 83
            +     ++     PCQPF+  G
Sbjct: 69 SSLDKLGAELWTMSPPCQPFTLKG 92


>gi|294629552|ref|ZP_06708112.1| DNA methylase [Streptomyces sp. e14]
 gi|292832885|gb|EFF91234.1| DNA methylase [Streptomyces sp. e14]
          Length = 436

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIKTQ 62
          + DLF G GG+ +      +   +      E +  +  T Y A      +  D++ ++ +
Sbjct: 16 VLDLFAGPGGLDV----AGHRLGIPSLG-IEWDRSACLTRYAA--GLDTLHADVSAVRRE 68

Query: 63 DI----PDHDVLLAGFPCQPFSQAG 83
                P+ +VL  G PCQ +S AG
Sbjct: 69 SFESLPPEINVLAGGPPCQTYSVAG 93


>gi|325849320|ref|ZP_08170737.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480182|gb|EGC83251.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 321

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKAKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|307191164|gb|EFN74862.1| DNA (cytosine-5)-methyltransferase 3A [Camponotus floridanus]
          Length = 704

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 8/85 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFN-HRNVECFFSSEINPYSVKTYQANFPNTLIF----GDI 56
           +++  LF G   +        N    V+ +++SEI+  ++    A+F + + +     DI
Sbjct: 401 IRVLSLFDG---LSTGFLVLLNLGIVVDVYYASEIDKNALTISSAHFGDRITYLGDVRDI 457

Query: 57  AKIKTQDIPDHDVLLAGFPCQPFSQ 81
            K K Q+I   D+L+ G PC   S 
Sbjct: 458 TKEKIQEIAPIDLLIGGSPCNDLSL 482


>gi|253571497|ref|ZP_04848903.1| DNA-cytosine methyltransferase [Bacteroides sp. 1_1_6]
 gi|251838705|gb|EES66790.1| DNA-cytosine methyltransferase [Bacteroides sp. 1_1_6]
          Length = 436

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV------------------KTY 43
            +  DLF G GG+     +       E     E++ Y+                   + Y
Sbjct: 3   YRFIDLFAGAGGLSEGFIRA----GYEPIAHIEMDHYACDSLKTRAAFHYLKENGKLEIY 58

Query: 44  QANFPNTLIFGD----------------IAK-IKTQDIPD-------------HDVLLAG 73
           +    N     D                I + I  + +P               D+++ G
Sbjct: 59  EEYLKNKKEKTDGSWLWNQVPKSVIDSVIQEAIGKETLPSLFERVDKLCNGKPVDMIIGG 118

Query: 74  FPCQPFSQAG 83
            PCQ +S AG
Sbjct: 119 PPCQAYSVAG 128


>gi|256421593|ref|YP_003122246.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
 gi|256036501|gb|ACU60045.1| DNA-cytosine methyltransferase [Chitinophaga pinensis DSM 2588]
          Length = 423

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 38/127 (29%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--------YQANFPN---- 49
           LK  DLF G GG+     +       E     EI   +  T        Y  N       
Sbjct: 6   LKYIDLFAGAGGLSEGFIRA----GFEPVAHVEIEEAACFTLKTRTAYHYLKNKGEYDTY 61

Query: 50  -TLIFGDIA-----KIKTQDIPD---------------------------HDVLLAGFPC 76
            + + G+I+     K    ++ D                            D+++ G PC
Sbjct: 62  VSYLKGEISRAELYKAVPSELMDAIINLPIGAEHNSAIHKAIEKQLLGSKVDLIIGGPPC 121

Query: 77  QPFSQAG 83
           Q +S  G
Sbjct: 122 QAYSVVG 128


>gi|281420198|ref|ZP_06251197.1| modification methylase HphIA [Prevotella copri DSM 18205]
 gi|281405693|gb|EFB36373.1| modification methylase HphIA [Prevotella copri DSM 18205]
          Length = 379

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
             + D FC  GG+ L                 +IN  S+KTY+ N+   ++  DI  I  
Sbjct: 32  FDVIDFFCCGGGMSLGF--ASLQEYFRIIGGVDINSTSLKTYELNYGTPVMNADITTISP 89

Query: 62  QD--------IPDHD--VLLAGFPCQPFS 80
                     I      V++   PCQ FS
Sbjct: 90  NSNVVQQTFKINKKRPLVVIGCAPCQGFS 118


>gi|209978474|gb|ACJ04671.1| DNA methyltransferase 1 [Carassius auratus]
          Length = 1503

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1026 LRTLDVFSGCGGLSEGFHQAGIS---ETHWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1081

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+      Q +P   D ++L  G PCQ FS
Sbjct: 1082 LKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1117


>gi|190338613|gb|AAI63894.1| Dnmt1 protein [Danio rerio]
          Length = 1500

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1023 LRTLDVFSGCGGLSEGFHQAGIS---ETHWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1078

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+      Q +P   D ++L  G PCQ FS
Sbjct: 1079 LKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1114


>gi|190337769|gb|AAI63893.1| Dnmt1 protein [Danio rerio]
          Length = 1500

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1023 LRTLDVFSGCGGLSEGFHQAGIS---ETHWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1078

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+      Q +P   D ++L  G PCQ FS
Sbjct: 1079 LKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1114


>gi|3818628|gb|AAC69603.1| DNA methyltransferase [Danio rerio]
          Length = 700

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
           L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 223 LRTLDVFSGCGGLSEGFHQAGIS---ETHWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 278

Query: 54  ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 279 LKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 314


>gi|40538748|ref|NP_571264.1| DNA (cytosine-5)-methyltransferase 1 [Danio rerio]
 gi|19263095|gb|AAL86596.1|AF483203_1 DNA (cytosine-5)-methyltransferase [Danio rerio]
          Length = 1499

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P T +F       
Sbjct: 1022 LRTLDVFSGCGGLSEGFHQAGIS---ETHWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVL 1077

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+      Q +P   D ++L  G PCQ FS
Sbjct: 1078 LKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1113


>gi|296414683|ref|XP_002837027.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632876|emb|CAZ81218.1| unnamed protein product [Tuber melanosporum]
          Length = 939

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDIAK 58
           +K  DLFCG G     LE+      ++  ++ +I+  ++ TY+AN  N    L  G +  
Sbjct: 534 MKGMDLFCGGGSFGRGLEEGGV---IDMKWAVDIDVPAIATYRANLRNQDTALYLGSVNN 590

Query: 59  IKTQDIP-----------DHDVLLAGFPCQPFSQA 82
                I            + D + AG PCQ FS A
Sbjct: 591 YMEDAIRGKYSHLVAHPDEVDFISAGSPCQGFSNA 625


>gi|313890914|ref|ZP_07824537.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
 gi|313120711|gb|EFR43827.1| DNA (cytosine-5-)-methyltransferase [Streptococcus pseudoporcinus
          SPIN 20026]
          Length = 316

 Score = 66.3 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +  +     +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGESYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|303236370|ref|ZP_07322960.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
 gi|302483428|gb|EFL46433.1| DNA (cytosine-5-)-methyltransferase [Prevotella disiens FB035-09AN]
          Length = 415

 Score = 65.9 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 31/107 (28%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ---------ANFPNTLIFGD 55
            +LF G GG+     Q   +  + C    E   Y  +T +          N  N +I  D
Sbjct: 8   IELFAGCGGLLDGFLQQGKYDTLACV---EWEQYPCQTLENRLLNKWHHRNANNEVIRFD 64

Query: 56  IAK-------IKTQDI------------PDHDVLLAGFPCQPFSQAG 83
           I +           +                D+++ G PCQ +S AG
Sbjct: 65  IQRTDELINGFDDSEYGKNEGLDKLIGGKKVDIIVGGPPCQAYSLAG 111


>gi|317505386|ref|ZP_07963311.1| DNA (cytosine-5-)-methyltransferase [Prevotella salivae DSM 15606]
 gi|315663493|gb|EFV03235.1| DNA (cytosine-5-)-methyltransferase [Prevotella salivae DSM 15606]
          Length = 436

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV------------------KTY 43
            +  DLF G GG+     +       E     E++ Y+                   + Y
Sbjct: 3   YRFIDLFAGAGGLSEGFIRA----GYEPIAHIEMDHYACDSLKTRAAFHYLKENGKLEIY 58

Query: 44  QANFPNTLIFGD----------------IAK-IKTQDIPD-------------HDVLLAG 73
           +    N     D                I + I  + +P               D+++ G
Sbjct: 59  EEYLKNKKEKTDGSWLWNKVPKSVIDSVIQEAIGKETLPSLFERVDKLCNGTPVDMIIGG 118

Query: 74  FPCQPFSQAG 83
            PCQ +S AG
Sbjct: 119 PPCQAYSVAG 128


>gi|322510858|gb|ADX06172.1| putative C-5 site-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 327

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 41/117 (35%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------- 52
           +K   LF G+GG  L + Q       E    +E +  S+++++ NFP + +         
Sbjct: 1   MKCISLFSGMGGDTLGMIQA----GCEVIAFNEYDKASIQSHKMNFPYSELICASVKERE 56

Query: 53  -------------------FGDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
                              + D+  I  Q+I D        D++ AG PCQ FS  G
Sbjct: 57  KYKESLTGTKKENHKAMKDYDDVYNI--QNIQDDVLGSYKADLIFAGHPCQGFSNGG 111


>gi|313888225|ref|ZP_07821897.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312845756|gb|EFR33145.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 321

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEEYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLVMHGSPCQDFSRIG 82


>gi|302654293|ref|XP_003018954.1| C-5 cytosine methyltransferase DmtA [Trichophyton verrucosum HKI
           0517]
 gi|291182644|gb|EFE38309.1| C-5 cytosine methyltransferase DmtA [Trichophyton verrucosum HKI
           0517]
          Length = 582

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
               D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  
Sbjct: 276 YTFGDGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLAEHSEVAQFL 331

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
           T  +P     DV+    PCQPFS A
Sbjct: 332 TS-LPRELLVDVMHVSPPCQPFSPA 355


>gi|302504717|ref|XP_003014317.1| C-5 cytosine methyltransferase DmtA [Arthroderma benhamiae CBS
           112371]
 gi|291177885|gb|EFE33677.1| C-5 cytosine methyltransferase DmtA [Arthroderma benhamiae CBS
           112371]
          Length = 644

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
               D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  
Sbjct: 277 YTFGDGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLAEHSEVAQFL 332

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
           T  +P     DV+    PCQPFS A
Sbjct: 333 TS-LPRELLVDVMHVSPPCQPFSPA 356


>gi|182677759|ref|YP_001831905.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633642|gb|ACB94416.1| DNA-cytosine methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 488

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 32/102 (31%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGDI----- 56
           FCGIGG+        +    E  F++++ P ++  +  NF  T         GDI     
Sbjct: 40  FCGIGGLSRGF----HSLGFEPKFANDVWPLALYNFLMNFDATYAATSGTHHGDILGLVG 95

Query: 57  --AKIKTQDI---------------PDHDVLLAGFPCQPFSQ 81
               I   DI                + DVLL G PCQ FS 
Sbjct: 96  SVEDISISDILPKISSSSGEGSLKVGEIDVLLGGPPCQGFSL 137


>gi|163855343|ref|YP_001629641.1| putative DNA-cytosine methyltransferase [Bordetella petrii DSM
          12804]
 gi|163259071|emb|CAP41370.1| putative DNA-cytosine methyltransferase [Bordetella petrii]
          Length = 197

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD---I-AKIKTQD 63
            GI          +    +E  + +EI P+        +P     GD   I  +++   
Sbjct: 20 CSGI----EAASLAWQPLGLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMAAIARQVRAGT 75

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 76 VPAPDILVGGTPCQSFSVAG 95


>gi|121594541|ref|YP_986437.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
 gi|120606621|gb|ABM42361.1| DNA-cytosine methyltransferase [Acidovorax sp. JS42]
          Length = 366

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            DLFCG GG    L   F    +      +++P     Y+AN     +  DI+K+   ++
Sbjct: 26  VDLFCGAGG----LTHGFVLEGLPVVAGIDLDPACRFPYEANNQARFVERDISKVTASEL 81

Query: 65  P----DHD--VLLAGFPCQPFS 80
                D D  +L    PCQPFS
Sbjct: 82  KALFGDADLTILAGCAPCQPFS 103


>gi|209883965|ref|YP_002287822.1| site-specific DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209872161|gb|ACI91957.1| site-specific DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 358

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDIAKI 59
             L  G GG+ L +               E + Y+     A   +       ++ DIA  
Sbjct: 23  LSLCSGAGGLDLGV--AIACPEYRAMGYVERDAYAAAILVARMEDAALDHAPVWDDIATF 80

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQAG 83
             +      D++ AG+PCQPFS AG
Sbjct: 81  DGRPWRGTIDIVTAGYPCQPFSVAG 105


>gi|302380785|ref|ZP_07269249.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna
          ACS-171-V-Col3]
 gi|302311385|gb|EFK93402.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna
          ACS-171-V-Col3]
          Length = 321

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGENYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|296108892|ref|YP_003615841.1| DNA-cytosine methyltransferase [Methanocaldococcus infernus ME]
 gi|295433706|gb|ADG12877.1| DNA-cytosine methyltransferase [Methanocaldococcus infernus ME]
          Length = 361

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 61/138 (44%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------- 50
           + + DLF G GG      +       E   + E+N  +  +Y  NF              
Sbjct: 1   MNLIDLFSGCGGFSRGFSE----LGFEPLLAIELNEDAAFSYALNFNGEVYEKTPEGYKV 56

Query: 51  ----------------------------------------LIFGDIAKIKTQDI------ 64
                                                   ++  DI ++ + DI      
Sbjct: 57  KEMKGYVGEYSFKIPRDEESVKWLRRLGTLNETTEKFSPIVLNEDIREVHSLDIKKLIKN 116

Query: 65  PDHDVLLAGFPCQPFSQA 82
              DV++ G PC+ ++ A
Sbjct: 117 KKVDVIIGGPPCEGYTGA 134


>gi|169824652|ref|YP_001692263.1| cytosine-specific DNA-methyltransferase [Finegoldia magna ATCC
          29328]
 gi|297588631|ref|ZP_06947274.1| type II restriction-modification system methylation subunit
          [Finegoldia magna ATCC 53516]
 gi|304440076|ref|ZP_07399968.1| type II restriction-modification system methylation subunit
          [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|167831457|dbj|BAG08373.1| cytosine-specific DNA-methyltransferase [Finegoldia magna ATCC
          29328]
 gi|297574004|gb|EFH92725.1| type II restriction-modification system methylation subunit
          [Finegoldia magna ATCC 53516]
 gi|304371443|gb|EFM25057.1| type II restriction-modification system methylation subunit
          [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 320

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR          + E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KISYEVVDYVEIDKACVKSYNALYGEAYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|300791025|ref|YP_003771316.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
 gi|299800539|gb|ADJ50914.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 435

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------LIF 53
           + +L  G GG  L LE+       +   + E++  +  T Q N P            +  
Sbjct: 12  VVELCAGAGGQALGLERA----GFKHRLAVELDSNAFTTLQTNIPGKIEINEEEREIVQQ 67

Query: 54  GDIAK---IKTQDIPDHDVLLAGFPCQPFSQAG 83
           GD+A       +D  +  +L  G PC PF+ AG
Sbjct: 68  GDVADPAVFNPEDHREVALLAGGVPCPPFTIAG 100


>gi|119509253|ref|ZP_01628403.1| DNA-cytosine methyltransferase family protein [Nodularia spumigena
           CCY9414]
 gi|119466095|gb|EAW46982.1| DNA-cytosine methyltransferase family protein [Nodularia spumigena
           CCY9414]
          Length = 418

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 24/97 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------GDIA 57
           I   F G GG+ +  E        +   S EIN    +T + N PN  +       GD+ 
Sbjct: 70  IVSFFSGAGGLDIGFEYA----GFKHLASIEINSIFCQTIRLNRPNWFVVGPPDYSGDVK 125

Query: 58  KIKTQDI------------PDHDVLLAGFPCQPFSQA 82
                +I            P   +   G PCQPFS A
Sbjct: 126 --NRDEIFTILKVMLGIPTPFEGIFTGGPPCQPFSIA 160


>gi|261403447|ref|YP_003247671.1| DNA-cytosine methyltransferase [Methanocaldococcus vulcanius M7]
 gi|261370440|gb|ACX73189.1| DNA-cytosine methyltransferase [Methanocaldococcus vulcanius M7]
          Length = 364

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 62/140 (44%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---------- 50
           +LK  DLFCG GG      +       +   S E+N  +  +Y  NF             
Sbjct: 3   ILKFVDLFCGCGGFSRGFVE----EGFKPLVSVELNEDAAFSYALNFNGQIYEKIKYDEY 58

Query: 51  ------------------------------------------LIFGDIAKIKTQDIPDH- 67
                                                     +I  DI +I + DI    
Sbjct: 59  RLKELKGYVGVYSFKCPFDEESLRWLRELGTLNQTTEKLSPIIINDDIREIHSLDIKKFA 118

Query: 68  -----DVLLAGFPCQPFSQA 82
                DV++ G PC+ ++ A
Sbjct: 119 KNKKIDVVIGGPPCEGYTGA 138


>gi|159897057|ref|YP_001543304.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
          23779]
 gi|159890096|gb|ABX03176.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
          23779]
          Length = 354

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCG+GG+   L               + +P     Y+ N     I   I ++  ++
Sbjct: 5  VIDLFCGVGGLTHGL----ILEGFGVLAGIDNDPSCKYAYEQNNRTRFIEKSITEVDGRE 60

Query: 64 I------PDHDVLLAGFPCQPFSQ 81
          +        H +L+   PCQ FSQ
Sbjct: 61 LNALYPNNQHKILVGCAPCQDFSQ 84


>gi|227500535|ref|ZP_03930589.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
          tetradius ATCC 35098]
 gi|227217363|gb|EEI82692.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
          tetradius ATCC 35098]
          Length = 321

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKSKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|218128915|ref|ZP_03457719.1| hypothetical protein BACEGG_00487 [Bacteroides eggerthii DSM
          20697]
 gi|217988878|gb|EEC55195.1| hypothetical protein BACEGG_00487 [Bacteroides eggerthii DSM
          20697]
          Length = 361

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 22/91 (24%)

Query: 2  LKITDLFCGIGGIRLDLE------QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          +++ DLFCGIGG+   ++      +     +  C ++          Y+ N     IF D
Sbjct: 16 IEVVDLFCGIGGLSYGMKSKGLKIKAGFDLDWTCLYA----------YETNNEAKFIFKD 65

Query: 56 IAKIKTQDI------PDHDVLLAGFPCQPFS 80
          I  ++ +DI          VL    PCQPFS
Sbjct: 66 IRTVQKEDIIPFYSKKSIKVLAGCAPCQPFS 96


>gi|327309192|ref|XP_003239287.1| hypothetical protein TERG_01268 [Trichophyton rubrum CBS 118892]
 gi|326459543|gb|EGD84996.1| hypothetical protein TERG_01268 [Trichophyton rubrum CBS 118892]
          Length = 622

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
               D FCG GG+    +Q      ++  ++ + +  ++ +Y+ANFP+ L    ++A+  
Sbjct: 316 YTFGDGFCGAGGVSRGAQQA----GLKLSWAFDKSESAINSYRANFPSCLTKHSEVAQFL 371

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
           T  +P     DV+    PCQPFS A
Sbjct: 372 TS-LPREILVDVMHVSPPCQPFSPA 395


>gi|306835815|ref|ZP_07468812.1| modification methylase NaeI [Corynebacterium accolens ATCC 49726]
 gi|304568289|gb|EFM43857.1| modification methylase NaeI [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
          L   ++  G GG  L LE              E++ ++ +T + N  ++   G       
Sbjct: 6  LTSLEICAGAGGQALGLETA----GFTHKAVIEVDQWAAQTLRLNRGDSGPHGKWNVLEM 61

Query: 55 DIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
          D+     +      D+   G PC PFS AG
Sbjct: 62 DVHDFDGKPWRHKIDLFAGGVPCPPFSIAG 91


>gi|260642764|ref|ZP_05417219.2| modification methylase NgoMIV [Bacteroides finegoldii DSM 17565]
 gi|260620609|gb|EEX43480.1| modification methylase NgoMIV [Bacteroides finegoldii DSM 17565]
          Length = 327

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    ++  G GG  L LE              E      +  + N     +   D+   
Sbjct: 1  MYNSIEICAGAGGQALGLEMA----GFSHVALVEYEKDYCECLKRNRQEWNIFCKDVHHF 56

Query: 60 KTQDI-PDHDVLLAGFPCQPFSQAG 83
            +      D+L  G PC PFS AG
Sbjct: 57 DGKPYYGQIDLLAGGVPCPPFSVAG 81


>gi|144900416|emb|CAM77280.1| modification methylase MthTI [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 356

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
                F   GG    ++           + +E      + ++ N    +    I +   
Sbjct: 20 FTFASFFACAGGADFGMKAA----GANPVYVNEFRRSVAELHRLNHGFPVDTRSITETGV 75

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D     ++L GFPCQPFS+AG
Sbjct: 76 TDYGSPTIMLGGFPCQPFSKAG 97


>gi|319645695|ref|ZP_07999926.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
 gi|317392242|gb|EFV73038.1| DNA-cytosine methyltransferase [Bacillus sp. BT1B_CT2]
          Length = 327

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+KI +LF GIG  R  L       + +     EI+  +V+ Y A + +      +    
Sbjct: 1  MIKILELFGGIGAPRKALVNLG--VDHKAIDYVEIDEKAVRAYNALYDHRYKPQSVVGYD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           +     DVL+ G PCQ FS+AG
Sbjct: 59 LR----PDVLVHGSPCQDFSRAG 77


>gi|189423373|ref|YP_001950550.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
 gi|189419632|gb|ACD94030.1| DNA-cytosine methyltransferase [Geobacter lovleyi SZ]
          Length = 375

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           + + D FCG GG     ++      ++  F+ +++  +  T+  NFP+T      I K+ 
Sbjct: 19  ISVFDFFCGCGGTSRGFQKA----GMDIAFALDVDKDAKNTFTKNFPSTDFCDKSIKKLT 74

Query: 61  TQDIPD-HD-------VLLAGFPCQPFS 80
             D     D       +     PCQPF+
Sbjct: 75  VLDFQHTLDKYKDSYKLFCGCAPCQPFT 102


>gi|170719036|ref|YP_001784193.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
 gi|168827165|gb|ACA32536.1| DNA-cytosine methyltransferase [Haemophilus somnus 2336]
          Length = 365

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--- 57
          M     +  GI          +     +  + +EI P+        +P     GD+    
Sbjct: 1  MFTYGSICSGI----EAASVAWQGLG-KPLWFAEIEPFPSALLAYRYPEIPNLGDMTALP 55

Query: 58 -KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           KI  ++I   DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIKAPDVLVGGTPCQAFSVAG 82


>gi|330940085|gb|EGH43270.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 502

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--- 58
          L+   +  GI          ++   +E  + +EI P+       ++P T   GD+ K   
Sbjct: 5  LQYGSVCSGI----EAATAAWHPLGMEPVWFAEIEPFPSAVLAHHYPRTPNLGDMTKLGA 60

Query: 59 -IKTQDIPDHDVLLAGFPCQPFSQAG 83
           +    I   DVL+ G PCQ F  AG
Sbjct: 61 LVLAGKIKAPDVLVGGTPCQAFRVAG 86


>gi|195867543|ref|ZP_03079546.1| type II restriction-modification system methylation subunit
          [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195867960|ref|ZP_03079957.1| type II restriction-modification system methylation subunit
          [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660356|gb|EDX53616.1| type II restriction-modification system methylation subunit
          [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660787|gb|EDX54041.1| type II restriction-modification system methylation subunit
          [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 323

 Score = 65.9 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA----NFPNTLIFGDIAK 58
          KI +LF GIG IR            E     EI+   VK+Y A    N+    + G   K
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYEENYKPKSVLG--YK 60

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
             + I   D+++ G PCQ FS+ G
Sbjct: 61 APNEKI---DLIMHGSPCQDFSRIG 82


>gi|119490455|ref|ZP_01622916.1| cytosine specific DNA methyltransferase (DDEM) [Lyngbya sp. PCC
          8106]
 gi|119453926|gb|EAW35081.1| cytosine specific DNA methyltransferase (DDEM) [Lyngbya sp. PCC
          8106]
          Length = 399

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-D----- 55
          LK  DLFCG+GG+   L+ T   R +E  ++ +    ++  Y+ N P T +   D     
Sbjct: 3  LKALDLFCGMGGLSWGLKST---RKIEPIWAVDNCQTALNLYELNLPKTNLLNLDLSRQL 59

Query: 56 -----IAKIKTQDIPDHDVLLAGFPCQPFSQ 81
               I KI        D+++ G PCQ F+Q
Sbjct: 60 DVTSLIEKINFN--GGIDLMVGGSPCQGFTQ 88


>gi|113461565|ref|YP_719634.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
 gi|112823608|gb|ABI25697.1| DNA-cytosine methyltransferase [Haemophilus somnus 129PT]
          Length = 365

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA--- 57
          M     +  GI          +     +  + +EI P+        +P     GD+    
Sbjct: 1  MFTYGSICSGI----EAASVAWQGLG-KPLWFAEIEPFPSALLAYRYPEIPNLGDMTALP 55

Query: 58 -KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           KI  ++I   DVL+ G PCQ FS AG
Sbjct: 56 EKILNREIKAPDVLVGGTPCQAFSVAG 82


>gi|152974572|ref|YP_001374089.1| DNA-cytosine methyltransferase [Bacillus cereus subsp. cytotoxis
          NVH 391-98]
 gi|152023324|gb|ABS21094.1| DNA-cytosine methyltransferase [Bacillus cytotoxicus NVH 391-98]
          Length = 371

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQT------FNHRNVECFFSSEINPYSVKTYQANF----PNT 50
          + +  + F G GG                   VE  +S+EI P +  TY  N     P+T
Sbjct: 3  IYRKGEFFNGPGGFAAGARMARVLDANGEEYRVEHTWSNEICPDAAATYINNICPAAPDT 62

Query: 51 LIFGDIAKIKTQD---IPDHDVLLAGFPCQPFSQAG 83
          +I  D+  +  +    +   D  + GFPC  FS  G
Sbjct: 63 VIVQDVRTLDIERDTRLGPIDAFVFGFPCNDFSIVG 98


>gi|237714171|ref|ZP_04544652.1| site-specific DNA-methyltransferase [Bacteroides sp. D1]
 gi|262408451|ref|ZP_06084998.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_22]
 gi|294644481|ref|ZP_06722241.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CC 2a]
 gi|229445663|gb|EEO51454.1| site-specific DNA-methyltransferase [Bacteroides sp. D1]
 gi|262354003|gb|EEZ03096.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_1_22]
 gi|292640172|gb|EFF58430.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CC 2a]
          Length = 250

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +  F  EI+ +        F +   + D+     ++     +VL  GFPCQPFS AG
Sbjct: 2  GWQNAFHCEIDDFCNTILNYWFKDAKSYTDVTTTDFREWRGKINVLTGGFPCQPFSVAG 60


>gi|237718974|ref|ZP_04549455.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_2_4]
 gi|229451752|gb|EEO57543.1| site-specific DNA-methyltransferase [Bacteroides sp. 2_2_4]
          Length = 250

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            +  F  EI+ +        F +   + D+     ++     +VL  GFPCQPFS AG
Sbjct: 2  GWQNAFHCEIDDFCNTILNYWFKDAKSYTDVTTTDFREWRGKINVLTGGFPCQPFSVAG 60


>gi|121583544|ref|YP_973963.1| DNA-cytosine methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120596788|gb|ABM40221.1| DNA-cytosine methyltransferase [Polaromonas naphthalenivorans CJ2]
          Length = 373

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQD 63
            DLFCG GG+   L++      V      +++      Y+AN      +  D+  +   D
Sbjct: 27  IDLFCGAGGLSCGLKK----VGVRVVAGIDVDAACQYPYEANHRGAKFLLQDVTTLTGAD 82

Query: 64  IP------DHDVLLAGFPCQPFS 80
           +          +L    PCQPFS
Sbjct: 83  LEALWSPTSVRLLAGCAPCQPFS 105


>gi|326427797|gb|EGD73367.1| methyltransferase [Salpingoeca sp. ATCC 50818]
          Length = 519

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN------VECFFSSE------INPYSVKTYQANFPN 49
           L++ DL+ GIGG+   L       N       +  +S E      +N  + K YQ N   
Sbjct: 7   LRVVDLYSGIGGLHAALGVAIARINARPTRAGQAPWSVEDVRPFDVNTAANKVYQHNHSI 66

Query: 50  TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                 I  +  + + D ++ L   PCQP+++ G
Sbjct: 67  APSPRGIDALTPRHVRDSNLWLMSPPCQPYTRIG 100


>gi|116062014|dbj|BAF34635.1| DNA methyltransferase 1a [Brassica rapa]
          Length = 1528

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LEQ          ++ E    + K ++ N P T +F           
Sbjct: 1091 LDIFAGCGGLSQGLEQAGVSA---TKWAIEYEEPAGKAFRKNHPETTVFVDNCNVILRAI 1147

Query: 54   ----GD----IAKIKTQDIPD---------------HDVLLAGFPCQPFS 80
                GD    I+  +  ++ +                D +  G PCQ FS
Sbjct: 1148 MEKCGDQDECISTKEANELAEKLDEDQKRTLPLPGQVDFINGGPPCQGFS 1197


>gi|300813808|ref|ZP_07094115.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
          836 str. F0141]
 gi|300512098|gb|EFK39291.1| DNA (cytosine-5-)-methyltransferase [Peptoniphilus sp. oral taxon
          836 str. F0141]
          Length = 321

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKAKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +  + D+++ G PCQ FS+ G
Sbjct: 63 N-ENIDLVMHGSPCQDFSRIG 82


>gi|325846341|ref|ZP_08169331.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481605|gb|EGC84644.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 315

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|261381417|ref|ZP_05985990.1| DNA (cytosine-5-)-methyltransferase [Neisseria subflava NJ9703]
 gi|284795594|gb|EFC50941.1| DNA (cytosine-5-)-methyltransferase [Neisseria subflava NJ9703]
          Length = 420

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 51/128 (39%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+  DLF G GG+     Q       +     E +  +  T Q       +   I K+  
Sbjct: 4   LRFLDLFAGAGGLSEGFIQA----GFKPVAHIESDKAACFTLQTRMAYHWLKS-IDKLDV 58

Query: 62  ---------------QDIPDH-------------------------------DVLLAGFP 75
                          + IP+H                               D+++ G P
Sbjct: 59  YVDYLNGKLSRTEFYKIIPEHITKTVINMEISENTLKTLFNEIDDLLKDSPLDLIVGGPP 118

Query: 76  CQPFSQAG 83
           CQ +S  G
Sbjct: 119 CQAYSLVG 126


>gi|256544753|ref|ZP_05472125.1| type II restriction-modification system methylation subunit
          [Anaerococcus vaginalis ATCC 51170]
 gi|256399642|gb|EEU13247.1| type II restriction-modification system methylation subunit
          [Anaerococcus vaginalis ATCC 51170]
          Length = 320

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|189500352|ref|YP_001959822.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides BS1]
 gi|189495793|gb|ACE04341.1| DNA-cytosine methyltransferase [Chlorobium phaeobacteroides BS1]
          Length = 420

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           LK  DLF G GG+     +       E     E +  +  T Q       +         
Sbjct: 5   LKFLDLFAGAGGLSEGFIRA----GFEPVAHVESDQAACFTLQTRIGYHWLNERRRIEQY 60

Query: 54  -----GDIA-------------------KIKTQDIPDH-------------DVLLAGFPC 76
                G I+                   +I    +P               D+++ G PC
Sbjct: 61  AEYLKGAISREAFYEYVPRQVIDSVINAEISAITLPYIFRRVDALLGNHSLDLIVGGPPC 120

Query: 77  QPFSQAG 83
           Q +S  G
Sbjct: 121 QAYSVIG 127


>gi|300925889|ref|ZP_07141727.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300418041|gb|EFK01352.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 182-1]
          Length = 380

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           ++K+ DLFCG GG+   L+++     +      +I+      Y+ N  +  +   +  I+
Sbjct: 32  LIKVVDLFCGAGGLTHGLQKS----GLNVVAGYDIDAACRFAYETNNKSLFVQKSVTDIE 87

Query: 61  TQDI------PDHDVLLAGFPCQPFS 80
             ++          VL    PCQPFS
Sbjct: 88  DGELVKYFEGAKVRVLAGCAPCQPFS 113


>gi|70731152|ref|YP_260893.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68345451|gb|AAY93057.1| DNA-cytosine methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 551

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    +  GI          ++       + +EI P+       ++P     GD+ K+  
Sbjct: 3  ITYGSVCSGI----EAATVAWHPLGWRADWYAEIEPFPSTVLAHHYPEIPNHGDMTKLGA 58

Query: 62 Q----DIPDHDVLLAGFPCQPFSQAG 83
          Q     I   D+L+ G PCQ FS AG
Sbjct: 59 QVLAGKIAAPDILVGGTPCQAFSVAG 84


>gi|66806465|ref|XP_636955.1| DNA -methyltransferase [Dictyostelium discoideum AX4]
 gi|74852778|sp|Q54JH6|CMT1_DICDI RecName: Full=DNA (cytosine-5)-methyltransferase
 gi|60465358|gb|EAL63449.1| DNA -methyltransferase [Dictyostelium discoideum AX4]
          Length = 379

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ + + GIGG+   L+++    + +   S +IN  +   Y+  F        I     
Sbjct: 4  LRVLEFYSGIGGMHYGLQESG--VDFQVIQSFDINTNANLNYKYTFNEDSSQKSIESYSV 61

Query: 62 QDIP--DHDVLLAGFPCQPFSQAG 83
          +++     +  L   PCQPF++ G
Sbjct: 62 EELEGFKANAWLMSPPCQPFTRLG 85


>gi|307330945|ref|ZP_07610077.1| DNA-cytosine methyltransferase [Streptomyces violaceusniger Tu
          4113]
 gi|306883406|gb|EFN14460.1| DNA-cytosine methyltransferase [Streptomyces violaceusniger Tu
          4113]
          Length = 386

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 15/93 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIF-G 54
              ++  G GG  + L +             EI+ ++  T ++N      +    +   
Sbjct: 8  FTSVEICAGAGGQAVGLHEA----GFRHLALIEIDEHACATLESNVTGNPEWDGCKVLKR 63

Query: 55 DIAKIKTQDIP----DHDVLLAGFPCQPFSQAG 83
          D+ + K  ++     + D+L  G PC PFS AG
Sbjct: 64 DLTEFKVDELGLKPGELDLLAGGVPCPPFSAAG 96


>gi|121593710|ref|YP_985606.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|121593834|ref|YP_985730.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120605790|gb|ABM41530.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
 gi|120605914|gb|ABM41654.1| C-5 cytosine-specific DNA methylase [Acidovorax sp. JS42]
          Length = 539

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P     GD+     +++   
Sbjct: 23 CSGI----EAVSLAWQPIGLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGT 78

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 79 VPAPDILVGGTPCQSFSVAG 98


>gi|297159178|gb|ADI08890.1| DNA-cytosine methyltransferase [Streptomyces bingchenggensis
          BCW-1]
          Length = 386

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 15/93 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIF-G 54
              ++  G GG  + L +             EI+  + +T + N      + +  +   
Sbjct: 8  FTSVEICAGAGGQAVGLHEA----GFRHLALIEIDDNACETLELNVTGNPEWGDCKVLKR 63

Query: 55 DIAKIKTQDIP----DHDVLLAGFPCQPFSQAG 83
          D+ K    ++     + D+L  G PC PFS AG
Sbjct: 64 DLTKFDVGELSLNPGELDLLAGGVPCPPFSAAG 96


>gi|326776070|ref|ZP_08235335.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
 gi|326656403|gb|EGE41249.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
          Length = 463

 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 29/104 (27%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----------------- 47
            +LF G GG+ + + +            +E N  + +T  A+                  
Sbjct: 17  VELFAGGGGLAMGVHRA----GFRPLLFNEFNNRACETLIASAGRVLGDSGLALIQDTAP 72

Query: 48  -------PNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
                  P  L  GD+ ++  +    + DVL  G PCQPFS  G
Sbjct: 73  VPPGPGEPAPLYPGDVRELDLRKFEGEVDVLAGGPPCQPFSAGG 116


>gi|49117032|gb|AAH72774.1| Dnmt1 protein [Xenopus laevis]
          Length = 1490

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F +   I  
Sbjct: 1014 LRTLDVFSGCGGLSEGFHQAGIS---ETNWAIEMWEPAAQAFRLNNPGTTVFTEDCNILL 1070

Query: 61   ------------TQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1071 KLVMSGEKTNSLGQRLPQKGDVEMLCGGPPCQGFS 1105


>gi|17225548|gb|AAL37469.1|AF328924_2 cytosine-specific DNA methyltransferase [Helicobacter pylori]
          Length = 107

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 17/89 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDI- 56
           KI DLFCG GG    LE          ++C      +  ++ T++ N  N + + GDI 
Sbjct: 3  YKILDLFCGAGGFSAGLEYLKEFDALIGLDC------DKQALITFENNHKNAIGVCGDIT 56

Query: 57 -AKIKTQDIP-----DHDVLLAGFPCQPF 79
            +IK + I      + ++++ G PCQ F
Sbjct: 57 QTEIKEKVIELAKKLEINMIIGGPPCQGF 85


>gi|148225023|ref|NP_001084021.1| DNA (cytosine-5-)-methyltransferase 1 [Xenopus laevis]
 gi|1731732|dbj|BAA11458.1| DNA (cytosine-5-)-methyltransferase [Xenopus laevis]
          Length = 1490

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F +   I  
Sbjct: 1014 LRTLDVFSGCGGLSEGFHQAGIS---ETNWAIEMWEPAAQAFRLNNPGTTVFTEDCNILL 1070

Query: 61   ------------TQDIP---DHDVLLAGFPCQPFS 80
                         Q +P   D ++L  G PCQ FS
Sbjct: 1071 KLVMSGEKTNSLGQRLPQKGDVEMLCGGPPCQGFS 1105


>gi|297800866|ref|XP_002868317.1| hypothetical protein ARALYDRAFT_355413 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297314153|gb|EFH44576.1| hypothetical protein ARALYDRAFT_355413 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1506

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE+       +  ++ E    + + ++ N P+  +F           
Sbjct: 1068 LDIFAGCGGLSYGLEKAGVS---DTKWAIEYEEPAAQAFKQNHPDATVFVDNCNVILRAI 1124

Query: 54   ----GDI-------------AKIKTQ---DIP---DHDVLLAGFPCQPFS 80
                GD+             AK+       +P     D +  G PCQ FS
Sbjct: 1125 MEKGGDVDDCISTTEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQGFS 1174


>gi|325475447|gb|EGC78628.1| hypothetical protein HMPREF9353_00209 [Treponema denticola F0402]
          Length = 354

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           K  D FCG GG+   L Q      ++     + +  +  TY+ N P+ T I  DI +++
Sbjct: 7  YKAIDFFCGGGGMTYGLRQA----GIDVIAGIDFDKDAKATYEYNNPHSTFIEVDIKELE 62

Query: 61 TQDIPDH---------DVLLAGFPCQPFSQ 81
           +               + +   PCQ +S 
Sbjct: 63 NEYFERIFKIKKKDDKLIFVGCSPCQFYSI 92


>gi|83649276|ref|YP_437711.1| site-specific DNA methylase [Hahella chejuensis KCTC 2396]
 gi|83637319|gb|ABC33286.1| Site-specific DNA methylase [Hahella chejuensis KCTC 2396]
          Length = 404

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK 60
             + F GIG +   L          C ++++I+P   + Y+  F +      GD+ +  
Sbjct: 5  TFIEFFAGIGLMHAGL----VGSGWRCAYANDIDPKKYQMYRDRFGDAGYYHIGDVWETD 60

Query: 61 T--QDIPDHDVL-LAGFPCQPFSQAG 83
             + I    +L  A FPC   S AG
Sbjct: 61 EVVERIEQAPLLATASFPCVDLSLAG 86


>gi|47220040|emb|CAG12188.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1209

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
            +  D+F G GG+     Q       E  ++ E+   + + ++ N P   +F +   I  
Sbjct: 783 YRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWEPAAQAFRLNNPGATVFTEDCNILL 839

Query: 61  ------------TQDIP---DHDVLLAGFPCQPFS 80
                        Q +P   D ++L  G PCQ FS
Sbjct: 840 KLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 874


>gi|294664030|ref|ZP_06729438.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
 gi|292606199|gb|EFF49442.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
          Length = 349

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQD 63
            LF G GG+ + ++        +   +++      +T+  NFP    I   I ++ T +
Sbjct: 11 ISLFSGGGGMDIGIKAA----GFDIKVATDAESLCQETFAKNFPGVPFIVRRIGELSTSE 66

Query: 64 IPD--------HDVLLAGFPCQPFS 80
          + D         D+L+ G PC  FS
Sbjct: 67 LLDAAGLAPGEVDLLIGGPPCPAFS 91


>gi|241763153|ref|ZP_04761213.1| C-5 cytosine-specific DNA methylase [Acidovorax delafieldii 2AN]
 gi|241367778|gb|EER62032.1| C-5 cytosine-specific DNA methylase [Acidovorax delafieldii 2AN]
          Length = 536

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P     GD+     +++   
Sbjct: 23 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGT 78

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 79 VPAPDILVGGTPCQSFSVAG 98


>gi|288573115|ref|ZP_06391472.1| DNA-cytosine methyltransferase [Dethiosulfovibrio peptidovorans
          DSM 11002]
 gi|288568856|gb|EFC90413.1| DNA-cytosine methyltransferase [Dethiosulfovibrio peptidovorans
          DSM 11002]
          Length = 350

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY---QANFPNTLIFGDIAK 58
          + + DLFCG GG+                   + +  + K Y   + N     I  D+  
Sbjct: 5  ISVVDLFCGAGGLTHGFVM----EGFRVLAGVDTDK-ACK-YPFEKNNAGAEFIASDVRD 58

Query: 59 IKTQDI----PDHD--VLLAGFPCQPFS 80
          +  +D+    P+ D  VL+   PCQPFS
Sbjct: 59 LSPEDLAKLYPEGDMKVLVGCAPCQPFS 86


>gi|89890924|ref|ZP_01202433.1| DNA (cytosine-5-)-methyltransferase, dcm [Flavobacteria bacterium
          BBFL7]
 gi|89517069|gb|EAS19727.1| DNA (cytosine-5-)-methyltransferase, dcm [Flavobacteria bacterium
          BBFL7]
          Length = 356

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  D FCG GG+   ++       ++     +       TY+AN  N   I  D+ ++K
Sbjct: 9  IKAVDFFCGGGGMSYGMQ----TSGIQVLAGIDYEENCRSTYEANINNAKFIKADVFELK 64

Query: 61 TQDI-------PDHD--VLLAGFPCQPFSQ 81
           +D+        + D  +L+   PCQ +S 
Sbjct: 65 EEDLQNTLNLTRNDDELLLIGCSPCQFWSI 94


>gi|15838375|ref|NP_299063.1| DNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9106848|gb|AAF84583.1|AE003999_11 DNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 537

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P     GD+     +++   
Sbjct: 23 CSGI----EAVSLAWQPLGLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGT 78

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 79 VPAPDILVGGTPCQSFSVAG 98


>gi|309790719|ref|ZP_07685269.1| site-specific DNA-methyltransferase [Oscillochloris trichoides
          DG6]
 gi|308227250|gb|EFO80928.1| site-specific DNA-methyltransferase [Oscillochloris trichoides
          DG6]
          Length = 368

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++  DLFCG+GG+   L +   H         +I+PY    Y+ N   T I  D+A I  
Sbjct: 17 IRGVDLFCGVGGLTHGLIRQGLHITHGI----DIDPYCRFPYENNNNATFIESDVANISG 72

Query: 62 QDIPDH--D----VLLAGFPCQPFS 80
           ++ +   D    +L    PCQPFS
Sbjct: 73 SELENILGDAQLRLLAGCAPCQPFS 97


>gi|218134945|ref|ZP_03463749.1| hypothetical protein BACPEC_02850 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990330|gb|EEC56341.1| hypothetical protein BACPEC_02850 [Bacteroides pectinophilus ATCC
           43243]
          Length = 416

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 39/130 (30%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT---------YQAN------ 46
           L   DLF G GG+     Q+            E+N ++ KT          + N      
Sbjct: 6   LNYIDLFAGAGGLSEGFIQS----GYRPVAHVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 47  ----------------FPNTL----------------IFGDIAKIK-TQDIPDHDVLLAG 73
                            P                   IF  I  IK  ++I   DV++ G
Sbjct: 62  YDYEKGKITREQLLEKIPKEELKTVINKEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 122 PPCQAYSLVG 131


>gi|210610975|ref|ZP_03288684.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
 gi|210152200|gb|EEA83207.1| hypothetical protein CLONEX_00874 [Clostridium nexile DSM 1787]
          Length = 423

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 39/130 (30%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT---------YQAN------ 46
           L   DLF G GG+     Q+            E+N ++ KT          + N      
Sbjct: 6   LNYIDLFAGAGGLSEGFIQS----GYRPVAHVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 47  ----------------FPNTL----------------IFGDIAKIK-TQDIPDHDVLLAG 73
                            P                   IF  I  IK  ++I   DV++ G
Sbjct: 62  YDYEKGKITREQLLEKIPKEELKTVINKEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 122 PPCQAYSLVG 131


>gi|160894869|ref|ZP_02075643.1| hypothetical protein CLOL250_02419 [Clostridium sp. L2-50]
 gi|156863300|gb|EDO56731.1| hypothetical protein CLOL250_02419 [Clostridium sp. L2-50]
          Length = 423

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 39/130 (30%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT---------YQAN------ 46
           L   DLF G GG+     Q+            E+N ++ KT          + N      
Sbjct: 6   LNYIDLFAGAGGLSEGFIQS----GYRPVAHVEMNEHAAKTIETRIAYYYLKDNGKIKSY 61

Query: 47  ----------------FPNTL----------------IFGDIAKIK-TQDIPDHDVLLAG 73
                            P                   IF  I  IK  ++I   DV++ G
Sbjct: 62  YDYEKGKITREQLLEKIPKEELKTVINQEMSESTIKGIFNTIDDIKREKEIDKIDVIIGG 121

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 122 PPCQAYSLVG 131


>gi|157825194|ref|YP_001492914.1| site-specific DNA methylase [Rickettsia akari str. Hartford]
 gi|157799152|gb|ABV74406.1| Site-specific DNA methylase [Rickettsia akari str. Hartford]
          Length = 93

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 31 FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
          FSS+I     + Y+ N  + L +G+I +I    IP HD+L AGFP Q FS 
Sbjct: 3  FSSDIGKDVQEAYKRNLGDKL-YGNITEISAHKIPKHDILCAGFPYQSFSI 52


>gi|322701389|gb|EFY93139.1| cytosine C5-DNA methyltransferase, putative [Metarhizium acridum
           CQMa 102]
          Length = 657

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---D--I 56
               D F G GG+    +        +   + + +P   +TY  NFP T ++    D  I
Sbjct: 297 YTFFDAFSGAGGVSRGAQNA----GFKVTHAIDKSPDVWRTYSLNFPETKLYKWPVDRFI 352

Query: 57  AKIKTQDIPDHDVLLAGFPCQPFSQA 82
            +     I   DVL    PCQ FS A
Sbjct: 353 GQTDDSSI-RVDVLHMSPPCQYFSPA 377


>gi|78047961|ref|YP_364136.1| DNA methyltransferase [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
 gi|78036391|emb|CAJ24082.1| DNA methyltransferase [Xanthomonas campestris pv. vesicatoria
          str. 85-10]
          Length = 538

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +E  + +EI P+        +P     GD+     +++   
Sbjct: 23 CSGI----EAVSLAWQPIGLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGT 78

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 79 VPAPDILVGGTPCQSFSVAG 98


>gi|156739999|gb|ABU93584.1| DNA cytosine 5-methyltransferase 1 [Ovis aries]
          Length = 1572

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+  G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1106 LRTLDVSSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1161

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G++   + Q +P   D ++L  G PCQ FS
Sbjct: 1162 LKLVMAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFS 1197


>gi|328698549|ref|XP_003240668.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like
           [Acyrthosiphon pisum]
          Length = 346

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIK 60
           L++  LF GIG     L +     ++E  ++SEI+  ++   + +F + +   G + +I 
Sbjct: 60  LRVLSLFDGIGTGYYALLKLG--FDIEVIYASEIDKDALMVTKYHFSDNIKQLGSVTEIT 117

Query: 61  T---QDIPDHDVLLAGFPCQPFS 80
           T     I   ++L  G PC   S
Sbjct: 118 TKMLDQIAPINLLFGGSPCSDLS 140


>gi|327284227|ref|XP_003226840.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Anolis
            carolinensis]
          Length = 1553

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1076 LRSLDVFSGCGGLSEGFHQAEVS---ETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1132

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1133 KLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFS 1167


>gi|326802740|ref|YP_004320558.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651598|gb|AEA01781.1| DNA (cytosine-5-)-methyltransferase [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 321

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +  +     +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGESYKAKSVIGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-DKIDLVMHGSPCQDFSRIG 82


>gi|317011769|gb|ADU85516.1| site-specific DNA-methyltransferase [Helicobacter pylori
          SouthAfrica7]
          Length = 166

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            + + F G GG  L   Q    +  +  + ++I+  ++KT   N  N  +   I     
Sbjct: 3  YNVCEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHN--NKELKDAIIDQTS 56

Query: 57 -AKIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
            +I  + +      + DV+ AG  C+ FS AG
Sbjct: 57 STEIDPKKLQAQIKQEIDVIFAGIVCKSFSLAG 89


>gi|94995093|ref|YP_603191.1| Type II restriction-modification system methylation subunit
          [Streptococcus pyogenes MGAS10750]
 gi|94548601|gb|ABF38647.1| Type II restriction-modification system methylation subunit
          [Streptococcus pyogenes MGAS10750]
          Length = 321

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        + + K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDRACVKSYNALYGEDYKPKSVVEYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-AKIDLVMHGSPCQDFSRIG 82


>gi|313683546|ref|YP_004061284.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
 gi|313156406|gb|ADR35084.1| DNA-cytosine methyltransferase [Sulfuricurvum kujiense DSM 16994]
          Length = 332

 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
          L   +L  G GG  L L         +     EI  Y+  T + N          +I GD
Sbjct: 5  LTSIELCAGAGGQALGLHLA----GFKHRLLIEIENYACNTLRMNNKLHALGWEEIIEGD 60

Query: 56 IAKIKTQDIPD---HDVLLAGFPCQPFSQAG 83
          + +    D+ +    D++  G PC PFS+AG
Sbjct: 61 LLEFAKSDLSNYSNIDLVAGGVPCPPFSKAG 91


>gi|260557494|ref|ZP_05829709.1| site-specific DNA-methyltransferase [Acinetobacter baumannii ATCC
          19606]
 gi|193076851|gb|ABO11576.2| site-specific DNA-methyltransferase [Acinetobacter baumannii ATCC
          17978]
 gi|260409120|gb|EEX02423.1| site-specific DNA-methyltransferase [Acinetobacter baumannii ATCC
          19606]
          Length = 304

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QAN------FPNTLIF 53
          +    LF G GG  L               + E + Y+ +    + N      FP   I+
Sbjct: 1  MNELALFAGAGGGVL----ASYLLGWRTVCAVERDAYAAQVLAQRQNDGILEAFP---IW 53

Query: 54 GDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           DI     +      DV+  GFPCQ  S AG
Sbjct: 54 SDITTFDGKPWQGIVDVISGGFPCQDISSAG 84


>gi|134296233|ref|YP_001119968.1| DNA-cytosine methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139390|gb|ABO55133.1| DNA-cytosine methyltransferase [Burkholderia vietnamiensis G4]
          Length = 461

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 38/134 (28%), Gaps = 59/134 (44%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------------- 50
            +LF G GG+ L + +       E     E N ++  T  AN  N               
Sbjct: 33  IELFSGCGGLALGIARA----GFEHRLLVEWNAHACATLNANATNGNGVAATTAHAADRA 88

Query: 51  -----------------LIFGDIAKIKTQD------------------------IPDHDV 69
                            +  GD+  I                            + D D+
Sbjct: 89  AHADRQDGASAIDARWLVARGDVRAIDWTAARDSLSGVASAASLAGGASLTDPGLADLDL 148

Query: 70  LLAGFPCQPFSQAG 83
           +  G PCQPFS AG
Sbjct: 149 IAGGPPCQPFSSAG 162


>gi|167851523|ref|ZP_02477031.1| DNA-cytosine methyltransferase [Burkholderia pseudomallei B7210]
          Length = 352

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG    L   F    V      +++P     Y+AN     +  DI+K+   ++
Sbjct: 12 VDLFCGAGG----LTHGFILEGVPVVAGIDMDPACRFPYEANNQARFVERDISKVTMAEL 67

Query: 65 P----DHD--VLLAGFPCQPFS 80
               D D  VL    PCQPFS
Sbjct: 68 NALFGDADLTVLAGCAPCQPFS 89


>gi|297804976|ref|XP_002870372.1| hypothetical protein ARALYDRAFT_355455 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297316208|gb|EFH46631.1| hypothetical protein ARALYDRAFT_355455 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1496

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE+       +  ++ E    + + ++ N P T +F           
Sbjct: 1048 LDIFAGCGGLSYGLEKAGVS---DTKWAIEYEEPAAQAFKQNHPKTTVFVDNCNVILRAI 1104

Query: 54   ----GDI-------------AKIKTQD---IP---DHDVLLAGFPCQPFS 80
                GD+             AK+       +P     D +  G PCQ FS
Sbjct: 1105 MEKCGDVDDCISTTEAAELAAKLDESQKSILPLPGQVDFINGGPPCQGFS 1154


>gi|145592040|ref|YP_001154042.1| DNA-cytosine methyltransferase [Pyrobaculum arsenaticum DSM
          13514]
 gi|145283808|gb|ABP51390.1| DNA-cytosine methyltransferase [Pyrobaculum arsenaticum DSM
          13514]
          Length = 318

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI---PDHDVLLAGFPCQPFS 80
             +   + +++  +V+TY AN  NT++   DI ++  +D+    + DVL+   PC+PF+
Sbjct: 21 AGFKIRVALDVDRDAVRTYSANHVNTVVLQRDIREVSYEDLVKYGEADVLIGSPPCEPFT 80

Query: 81 QA 82
           A
Sbjct: 81 SA 82


>gi|34451619|gb|AAQ72366.1| TspRI methylase [Thermus sp. R]
          Length = 431

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
           + DLF G GG  +  EQ             +I   + KT+  + P    I GD   +  +
Sbjct: 69  LVDLFSGAGGFSVGFEQA----GFVSALGLDIYTVAAKTFMEHHPRAGFILGDARAVTPE 124

Query: 63  DIPDH------DVLLAGFPCQPFSQ 81
            + +        V+  G PCQ FS 
Sbjct: 125 MLLEALNGLRPHVVTGGVPCQRFSL 149


>gi|9632097|ref|NP_048886.1| hypothetical protein PBCV1_A530R [Paramecium bursaria Chlorella
          virus 1]
 gi|1620201|gb|AAC96897.1| M.CviAIV cytosine DNA methyltransferase [Paramecium bursaria
          Chlorella virus 1]
          Length = 335

 Score = 64.8 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
          L+  DLF GIGGI   L +      V      E N  +    +   P   +F D+     
Sbjct: 3  LRALDLFSGIGGITHGLRKI-----VTPVAFVEKNDEARAFLEKKNPTIPVFDDVCSFDA 57

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
          T+ I   D++ A  PC  FS AG
Sbjct: 58 TKWIDKVDIITAVEPCTGFSNAG 80


>gi|308185228|ref|YP_003929361.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
 gi|308061148|gb|ADO03044.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
          Length = 368

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 44/125 (35%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE---IN--------------------- 36
           MLK+  +F GIG     L++       E  F+ +   I+                     
Sbjct: 1   MLKVASVFSGIGAFEWALKRL--DLEHEILFACDNGNIDLKLDYDAELNKIKSLSSIKEK 58

Query: 37  ---------PYSVKT------YQANF--PNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQP 78
                     +S KT      Y AN+   N   F DI  +   D  D  D+L+ G PCQ 
Sbjct: 59  KNYTNNLYKQHSRKTNFVKQSYLANYTIQNDCFFQDIKLLDGTDFTDKVDILVGGSPCQS 118

Query: 79  FSQAG 83
           FS  G
Sbjct: 119 FSSIG 123


>gi|71274663|ref|ZP_00650951.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71899625|ref|ZP_00681779.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
 gi|71164395|gb|EAO14109.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Dixon]
 gi|71730577|gb|EAO32654.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
          Length = 329

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
              ++  G GG  L LE              E+ P +  T + N P   +I  D+ +  
Sbjct: 15 FNSLEMCAGAGGQALGLEM----VGFNHAALVELEPTACATLRLNRPAWNVIEDDLRRFD 70

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
                 D++  G PC PFS+AG
Sbjct: 71 GLPYQGIDLVAGGVPCPPFSKAG 93


>gi|301609669|ref|XP_002934384.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1 [Xenopus (Silurana)
            tropicalis]
          Length = 1492

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1016 LRTLDVFSGCGGLSEGFHQAGIS---ETNWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1072

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1073 KLVMSGEKTNSLGQRLPQKGDVEMLCGGPPCQGFS 1107


>gi|182765469|ref|NP_001116832.1| hypothetical protein LOC100036795 [Xenopus laevis]
 gi|171846414|gb|AAI61682.1| LOC100036795 protein [Xenopus laevis]
          Length = 1492

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L+  D+F G GG+     Q       E  ++ E+   + + ++ N P T +F        
Sbjct: 1016 LRTLDVFSGCGGLSEGFHQAGIS---ETNWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLL 1072

Query: 54   -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                 G+      Q +P   D ++L  G PCQ FS
Sbjct: 1073 KLVMSGEKTNSLGQRLPQKGDVEMLCGGPPCQGFS 1107


>gi|145635992|ref|ZP_01791674.1| modification methylase HgiDII [Haemophilus influenzae PittAA]
 gi|145266758|gb|EDK06780.1| modification methylase HgiDII [Haemophilus influenzae PittAA]
          Length = 343

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++  DLFCG GG+   L+Q      ++     +I       ++ N     +  D++ + 
Sbjct: 1  MIEAIDLFCGAGGLTAGLQQA----GIKVKAGYDIEEQCRYAFEFNNHAEFVNKDVSLVD 56

Query: 61 TQDIPDHD------VLLAGFPCQPFS 80
           ++I          +L    PCQPFS
Sbjct: 57 NEEIARRFSKKAIRLLAGCAPCQPFS 82


>gi|325279948|ref|YP_004252490.1| DNA-cytosine methyltransferase [Odoribacter splanchnicus DSM
          20712]
 gi|324311757|gb|ADY32310.1| DNA-cytosine methyltransferase [Odoribacter splanchnicus DSM
          20712]
          Length = 359

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          L+  D FCG GG+   L Q      VE     ++      TY+AN P T   G DI K++
Sbjct: 4  LRAIDFFCGGGGMTCGLRQA----GVEVMAGVDLAEECESTYEANNPGTKFVGADITKLE 59

Query: 61 TQD-------IPDHD--VLLAGFPCQPFSQ 81
                    I + D  VL+   PCQ +S 
Sbjct: 60 ENYFEKQFGLIRNDDNLVLVGCSPCQYYSI 89


>gi|320527420|ref|ZP_08028601.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
 gi|320132133|gb|EFW24682.1| DNA (cytosine-5-)-methyltransferase [Solobacterium moorei F0204]
          Length = 428

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------------Y 43
               DLF G GG+     Q+      +     E++ ++ +T                  Y
Sbjct: 10  YNFIDLFAGAGGLSEGFLQS----GFKPVAHVEMDEFAARTLETRSAYYYLKETGNIGLY 65

Query: 44  QANFPNTL--------IFGDIAKIKTQD----------------------IPDHDVLLAG 73
           +      +        I   I K    +                      I   DV++ G
Sbjct: 66  KKYLSGAIDRSEFMQFIPASITKTIINETMSDESLTGIFRTIDGIMKIRGIEKIDVIVGG 125

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 126 PPCQAYSLVG 135


>gi|332029105|gb|EGI69118.1| tRNA (cytosine-5-)-methyltransferase [Acromyrmex echinatior]
          Length = 309

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIPD--HDVLLAGFPCQPFSQAG 83
          +   + +INP +   Y  NFP T++   +I  I  Q++     D++    PCQPF++ G
Sbjct: 9  KVVAAIDINPVANDVYHHNFPETVLMNRNIQSINAQELNKLNVDIMFMSPPCQPFTRLG 67


>gi|326385181|ref|ZP_08206848.1| C-5 cytosine-specific DNA methylase [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196085|gb|EGD53292.1| C-5 cytosine-specific DNA methylase [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 425

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG+ +      +  +V      E +  +V+T +A    + I GD+ + + +D
Sbjct: 2  IVDLFAGPGGLDV----AAHWLDVPSIG-IEFDENAVETREA-AGLSSILGDVTRWRPED 55

Query: 64 IPD-HDVLLAGFPCQPFSQAG 83
            D  +VL  G PCQ ++ AG
Sbjct: 56 FTDSVNVLTGGPPCQTYTVAG 76


>gi|229008076|ref|ZP_04165619.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
 gi|228753191|gb|EEM02686.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
          Length = 87

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
          L   D+F G+GG RL +EQ  +     C    E + ++  +Y+A           DI  +
Sbjct: 3  LTFLDIFAGVGGFRLGMEQAGHC----CVGFIERDKFARASYKAIHRTEKEWTKRDINGV 58

Query: 60 KT 61
            
Sbjct: 59 PP 60


>gi|331002102|ref|ZP_08325621.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411196|gb|EGG90612.1| hypothetical protein HMPREF0491_00483 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 309

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
          +LF GIG IR  L +   +         EI+   VK+Y A +       DI      +  
Sbjct: 2  ELFGGIGAIRKALIR--QNIPHRVIDYVEIDKNCVKSYNALYKANFKSKDIVGYHAPN-E 58

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + D+L+ G PCQ FS+ G
Sbjct: 59 NIDLLMHGSPCQDFSRVG 76


>gi|56695946|ref|YP_166300.1| C-5 cytosine-specific family DNA methylase [Ruegeria pomeroyi
          DSS-3]
 gi|56677683|gb|AAV94349.1| DNA methylase, C-5 cytosine-specific family [Ruegeria pomeroyi
          DSS-3]
          Length = 373

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQD 63
           DLFCG GG+   LE             ++I   + KT++A  P    I G I  +  + 
Sbjct: 6  IDLFCGAGGLSAGLEMA----GFTVLAGNDIFDAAGKTFEATHPRAKFIPGPIEDLTIEH 61

Query: 64 IPDH--------DVLLAGFPCQPFSQ 81
          + +          VL  G PCQ +S 
Sbjct: 62 LLEVTGLKPGELTVLAGGPPCQAYSV 87


>gi|325478388|gb|EGC81503.1| DNA (cytosine-5-)-methyltransferase [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 321

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y   +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNELYGEDYKAKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLIMHGSPCQDFSRIG 82


>gi|240142602|ref|YP_002967115.1| putative DNA methyltransferase [Methylobacterium extorquens AM1]
 gi|240012549|gb|ACS43774.1| putative DNA methyltransferase [Methylobacterium extorquens AM1]
          Length = 260

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---PYSVK-----TYQANFPNTLIFGD 55
           + DLF G GG+     +T          + ++    P +       TY+AN        D
Sbjct: 12  VVDLFSGGGGMSCGFART---PGFRLVGAVDLERGKPSAGATGCNGTYKANIGIDPHRAD 68

Query: 56  IAKIKTQDIPD-------HD-------VLLAGFPCQPFSQA 82
           +A +   D+ +        D       VL A  PC  FS+A
Sbjct: 69  LATLTPDDLREAVLRTAGVDLAPGRLGVLAACPPCTDFSRA 109


>gi|198416008|ref|XP_002122948.1| PREDICTED: Zn-finger (CXXC)-5 [Ciona intestinalis]
          Length = 1305

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           L+  D+F G GG+     Q       E  ++ E+   + + Y+ N P   +F +   +  
Sbjct: 843 LRSLDVFSGCGGLSEGFHQAGIA---EPSYAIELWEPAAQAYRLNNPGATVFTEDCNVLL 899

Query: 60  -----------KTQDIP---DHDVLLAGFPCQPFS 80
                        Q +P   D ++L  G PCQ FS
Sbjct: 900 EMVMNGEERSKCGQRLPQKGDVELLCGGPPCQGFS 934


>gi|189460101|ref|ZP_03008886.1| hypothetical protein BACCOP_00737 [Bacteroides coprocola DSM
          17136]
 gi|255693802|ref|ZP_05417477.1| modification methylase HgiDII [Bacteroides finegoldii DSM 17565]
 gi|189433184|gb|EDV02169.1| hypothetical protein BACCOP_00737 [Bacteroides coprocola DSM
          17136]
 gi|260620371|gb|EEX43242.1| modification methylase HgiDII [Bacteroides finegoldii DSM 17565]
          Length = 355

 Score = 64.8 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 18/95 (18%)

Query: 1  ML----KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGD 55
          M+    K  D FCG GG+   L Q      +      + +  + +TY+ N   +  I  +
Sbjct: 1  MMASKYKAIDFFCGGGGMTCGLRQA----GINVIAGVDFDQDAKETYEYNNSGSVFIQTN 56

Query: 56 IAKIKTQ------DIPDHD---VLLAGFPCQPFSQ 81
          I  +++        I  +D   +L+   PCQ +S 
Sbjct: 57 IKNLRSNYFERKFGIRKNDDFLILVGCSPCQFYSI 91


>gi|325269502|ref|ZP_08136118.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988121|gb|EGC20088.1| DNA (cytosine-5-)-methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 393

 Score = 64.4 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFP--NTLIFGDIAKIKTQD 63
           F GIG     +E + +   ++C   F+ +I+    KTY AN+P        D+     + 
Sbjct: 39  FSGIG----AIEHSMHRLGLKCQIQFAGDIDANCKKTYFANYPISEAQWHTDVHDFDAKP 94

Query: 64  IP-DHDVLLAGFPCQPFSQAG 83
                D+ + G PCQ FS  G
Sbjct: 95  YKGKVDLFVGGAPCQAFSLRG 115


>gi|127441|sp|P25265|MTD2_HERAU RecName: Full=Modification methylase HgiDII; Short=M.HgiDII;
          AltName: Full=Cytosine-specific methyltransferase
          HgiDII
 gi|48773|emb|CAA38941.1| methyltransferase [Herpetosiphon aurantiacus]
          Length = 354

 Score = 64.4 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCG+GG+   L               + +P     Y+ N     I   I+++  ++
Sbjct: 5  VIDLFCGVGGLTHGL----ILEGFGVLAGIDNDPSCKYAYEQNNRTRFIEKSISEVDGRE 60

Query: 64 I------PDHDVLLAGFPCQPFSQ 81
          +        H +L+   PCQ FSQ
Sbjct: 61 LNALYPNNQHKILVGCAPCQDFSQ 84


>gi|227484740|ref|ZP_03915056.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
          lactolyticus ATCC 51172]
 gi|227237262|gb|EEI87277.1| possible DNA (cytosine-5-)-methyltransferase [Anaerococcus
          lactolyticus ATCC 51172]
          Length = 321

 Score = 64.4 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EQIDLVMHGSPCQDFSRIG 82


>gi|303277675|ref|XP_003058131.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226460788|gb|EEH58082.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 416

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT---LIFGDI-- 56
           +++ + F G G +R+ L++    R VE   + + +  +   Y ANFPN       G++  
Sbjct: 62  IRLVEWFSGTGMMRVALDR-GTSRGVEHVAAIDNSEVANAVYAANFPNDATPPSRGNVEH 120

Query: 57  ---AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              A+I  + +   ++     PCQP+++ G
Sbjct: 121 WTAARIDAEGLGAAELWTLSPPCQPYTRKG 150


>gi|171684935|ref|XP_001907409.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942428|emb|CAP68080.1| unnamed protein product [Podospora anserina S mat+]
          Length = 752

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
               D+F G GG    +E++         FS +    + ++ + NFP T I+  ++    
Sbjct: 328 YTAADIFAGAGGASRGIERS----GCRLLFSLDHWEPAARSLRRNFPGTHIYQKEVTDFV 383

Query: 61  TQDIPDH----DVLLAGFPCQPFSQA 82
           T+D+P      D+L    PCQ +S A
Sbjct: 384 TEDLPPEHSYPDILHLSPPCQFWSPA 409


>gi|1709163|sp|P50188|MTN1_NOCAE RecName: Full=Modification methylase NaeI; Short=M.NaeI; AltName:
          Full=Cytosine-specific methyltransferase NaeI
 gi|775103|gb|AAC43325.1| NaeI modification methyltransferase [Lechevalieria
          aerocolonigenes]
          Length = 413

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAK---I 59
          + ++  G GG  L LE+           + E++  +  T + N   + +I GD+A    +
Sbjct: 6  VVEICAGAGGQALGLEKA----GFSHRLAVELDVNAAATLRKNLKSDVVITGDVADPSVL 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
             +     +L  G PC PFS AG
Sbjct: 62 NPMEHLGVSLLAGGVPCPPFSIAG 85


>gi|158320926|ref|YP_001513433.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141125|gb|ABW19437.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 423

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 60/138 (43%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK-------------------- 41
           +   DLF G GG+     +       E     E++  + K                    
Sbjct: 4   INFLDLFAGAGGLSEGFLRA----GFEPVAHIELDANACKTLKTRSIYHYLKKNDMLDLY 59

Query: 42  -TYQANFPNTLIFGD--IAK-----------------IKTQDIP---------------- 65
            TYQ  +  +    D  I K                 I  + +P                
Sbjct: 60  RTYQKTYNKSEDVKDKAIEKLLSYIPKDQLEPVMNIEISEKTLPYIFQEIDCRLKHMEHE 119

Query: 66  DHDVLLAGFPCQPFSQAG 83
             D+++ G PCQ +S  G
Sbjct: 120 GIDLIIGGPPCQAYSLVG 137


>gi|281416239|ref|YP_003347588.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209504|gb|ACZ64045.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3A]
 gi|270209572|gb|ACZ64112.1| DNA cytosine methyltransferase [Enterococcus phage phiFL3B]
          Length = 317

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  L         +     E N  +V++Y A F   + +   + + 
Sbjct: 1  MIQILELFGGIGAPRKALINLGIPH--KSIDYVEWNEKAVRSYNAMFEKEIKYQPQSVVG 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
              P  D+L+ G PCQ FS  G
Sbjct: 59 WNLKP--DILVHGSPCQDFSIGG 79


>gi|159028410|emb|CAO89852.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 446

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 18/95 (18%)

Query: 1  MLKITDLFCGIGGI-RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAK 58
          M K   LF   GGI  + L         E   ++E+     + ++ N P +L I GDI  
Sbjct: 1  MRKAISLFA-CGGIGDMALRSG----GFEVVVANELLKDRAEVFKFNHPESLMIIGDIWD 55

Query: 59 IKTQDI----------PDHDVLLAGFPCQPFSQAG 83
           K  +I           + D++ A  PCQ  S+ G
Sbjct: 56 -KKNEIVAETKQRLSGQNLDIVFATPPCQGMSRNG 89


>gi|110005053|emb|CAK99384.1| hypothetical c-5 cytosine-specific dna methyltransferase protein
          [Spiroplasma citri]
          Length = 357

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QANFPNTLIFGDIAKIKTQ 62
           DLFCGIGG+   L ++     +E     +I+    K++  + N     I  DI +++  
Sbjct: 9  IDLFCGIGGLTNGLVKS----GIEILAGFDIDETCRKSFEQKLNNSPKFIKKDIRELEKN 64

Query: 63 DIPDHD------VLLAGFPCQPFS 80
          D+          ++    PCQP+S
Sbjct: 65 DLLSFFLQNTYKIIAGCAPCQPYS 88


>gi|127486|sp|P23737|MTS9_STAAU RecName: Full=Modification methylase Sau96I; Short=M.Sau96I;
           AltName: Full=Cytosine-specific methyltransferase Sau96I
 gi|581567|emb|CAA37260.1| Sau96I DNA methyltransferase [Staphylococcus aureus]
 gi|329730456|gb|EGG66846.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 430

 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI--KTQDI--PDHDVLLAGFPCQ 77
               +  + + EI+  + +T + N P   +I  DI  I     +    + D+L  G+PCQ
Sbjct: 116 ESAGLSTYGAVEIDKNAAETLRINRPKWKVIENDIEFIADNLDEFIDEEIDILSGGYPCQ 175

Query: 78  PFSQAG 83
            FS AG
Sbjct: 176 TFSYAG 181


>gi|296232860|ref|XP_002807840.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
            1-like [Callithrix jacchus]
          Length = 1678

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 21/96 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIF------- 53
            L+  D+F G GG+     Q       E  ++ E  +P +   ++ N P + +F       
Sbjct: 1201 LRTLDVFSGCGGLSEGFHQAGIS---ETLWAIEMWDPAAQA-FRLNNPGSTVFTEDCNVL 1256

Query: 54   ------GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                  G+    + Q +P   D + L  G PCQ FS
Sbjct: 1257 LKLVMAGETTNSRGQRLPQKGDVETLCGGQPCQGFS 1292


>gi|322709664|gb|EFZ01240.1| cytosine C5-DNA methyltransferase, putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 654

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---D--I 56
               D F G GG+    +        +   + + +P   +TY  NFP   ++    D  I
Sbjct: 294 YTFFDAFSGAGGVSRGAQNA----GFKVTHAIDKSPDVWRTYSLNFPEAKLYKWSVDRFI 349

Query: 57  AKIKTQDIPDHDVLLAGFPCQPFSQA 82
            +     I   DVL    PCQ FS A
Sbjct: 350 EQTNDASI-RVDVLHMSPPCQYFSPA 374


>gi|322510870|gb|ADX06184.1| putative C-5 cytosine-specific DNA methyltransferase [Organic Lake
           phycodnavirus 1]
          Length = 465

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 24  HRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK-TQDIPDHDVLLAGFPCQPFSQ 81
                    ++ N    KT + N P+  ++   + KI  +Q +   D+L  G PCQ FSQ
Sbjct: 162 KSGFTPILLNDNNNDCCKTLKHNHPDANIVCSSMDKIDYSQYVNKVDLLTGGVPCQSFSQ 221

Query: 82  AG 83
           AG
Sbjct: 222 AG 223


>gi|303233873|ref|ZP_07320524.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
 gi|302495017|gb|EFL54772.1| DNA (cytosine-5-)-methyltransferase [Finegoldia magna BVS033A4]
          Length = 315

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI + F GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILEFFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGEDYKPKSVVAYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G PCQ FS+ G
Sbjct: 63 N-EKIDLVMHGSPCQDFSRIG 82


>gi|291238124|ref|XP_002738981.1| PREDICTED: DNA (cytosine-5-)-methyltransferase [Saccoglossus
           kowalevskii]
          Length = 1294

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
           L+  D+F G GG+     Q+      E  ++ E    + + ++ N P   +F D      
Sbjct: 824 LRSLDVFAGCGGLSEGFHQSGVA---ESTWAIEKEEPAAQAFRLNNPGCTVFTDDCNTLL 880

Query: 57  --------AKIKTQDIPD---HDVLLAGFPCQPFS 80
                        Q +P     ++L  G PCQ FS
Sbjct: 881 RLVMDGETTNSVGQKLPQKGQVELLCGGPPCQGFS 915


>gi|283462212|gb|ADB22400.1| DNA (cytosine-5-)-methyltransferase [Saccoglossus kowalevskii]
          Length = 820

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
           L+  D+F G GG+     Q+      E  ++ E    + + ++ N P   +F D      
Sbjct: 350 LRSLDVFAGCGGLSEGFHQSGVA---ESTWAIEKEEPAAQAFRLNNPGCTVFTDDCNTLL 406

Query: 57  --------AKIKTQDIPD---HDVLLAGFPCQPFS 80
                        Q +P     ++L  G PCQ FS
Sbjct: 407 RLVMDGETTNSVGQKLPQKGQVELLCGGPPCQGFS 441


>gi|159905323|ref|YP_001548985.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C6]
 gi|159886816|gb|ABX01753.1| DNA-cytosine methyltransferase [Methanococcus maripaludis C6]
          Length = 355

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 55/132 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------- 50
           +   DLFCG GG      +       +   + E++  +  +Y  N+  T           
Sbjct: 1   MNFIDLFCGCGGFSRGFVE----MGFKPLLAIELDENAANSYALNYNGTVFEKKLNEFLE 56

Query: 51  -------------------------------LIFGDIAKIKTQDIP-----DHD----VL 70
                                          +I  DI +I ++ I      + D    ++
Sbjct: 57  KEVYFKLEDFLVNDDIAEFKKSNNYENLNPVVINQDIREINSKYISNKIKDNFDSKIGLV 116

Query: 71  LAGFPCQPFSQA 82
           + G PC+ ++ A
Sbjct: 117 IGGPPCEGYTGA 128


>gi|325965496|ref|YP_004243400.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471583|gb|ADX75266.1| DNA-methyltransferase Dcm [Arthrobacter phenanthrenivorans Sphe3]
          Length = 389

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 24/106 (22%)

Query: 2   LKITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEINPYSVKTYQANF----------- 47
            ++ +LF G GG+ L      Q      +   ++++ +  + KTY+ N            
Sbjct: 6   YRMGELFSGPGGMALGARLAAQAVEGVALRHAWANDYDLDTCKTYKRNILVPEYGDDAKL 65

Query: 48  ----------PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                        ++  ++  +  + + + D    GFPC  +S  G
Sbjct: 66  VESAADLPAAGGGVVHQNVHTLDIEALGEIDGFAFGFPCNDYSLVG 111


>gi|308805851|ref|XP_003080237.1| putative DNA methyltransferase (ISS) [Ostreococcus tauri]
 gi|116058697|emb|CAL54404.1| putative DNA methyltransferase (ISS) [Ostreococcus tauri]
          Length = 382

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI- 64
           +L+ GIG  RL LE   +  +++   + + +  +   Y+ANF +     +I  +    + 
Sbjct: 39  ELYSGIGATRLALE---HLVDLQDVVAIDNSDAANAVYEANFGDVPRRANIEHLDANALF 95

Query: 65  --PDHD-VLLAGFPCQPFSQAG 83
              + D  L A  PCQP+++ G
Sbjct: 96  PSSERDYALTASPPCQPYTRRG 117


>gi|323485262|ref|ZP_08090612.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14163]
 gi|323401440|gb|EGA93788.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14163]
          Length = 335

 Score = 64.0 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L+I +LF GIG  R+ L       +V+     EI+  +V++Y A F     +     +  
Sbjct: 7  LQILELFGGIGSPRVALRNIG--VSVKSIDYVEIDEKAVRSYNAMFEQESAYSPQTVVGW 64

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P  D+L+ G PCQ FS AG
Sbjct: 65 NLQP--DILIHGSPCQDFSIAG 84


>gi|315029938|gb|EFT41870.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
          TX4000]
          Length = 317

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++I +LF GIG  R  L         +     E N  +V++Y A F   + +   + + 
Sbjct: 1  MIQILELFGGIGAPRKALINLGIPH--KSIDYVEWNEKAVRSYNAMFEKEIKYQPQSVVG 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
              P  D+L+ G PCQ FS  G
Sbjct: 59 WNLKP--DILVHGSPCQDFSIGG 79


>gi|288799842|ref|ZP_06405301.1| modification methylase BepI (Cytosine-specific methyltransferase
           BepI) [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333090|gb|EFC71569.1| modification methylase BepI (Cytosine-specific methyltransferase
           BepI) [Prevotella sp. oral taxon 299 str. F0039]
          Length = 406

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 18/78 (23%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------------KTQDIP- 65
              + E  F+++INPY+ +T+   F N     DI++I                +   +P 
Sbjct: 36  KETDFETIFANDINPYAKRTWVDYF-NRKRKQDISEIYILDSIVDIVKKYRNGEISILPI 94

Query: 66  DHDVLLAGFPCQPFSQAG 83
           + D++  GFPCQ FS AG
Sbjct: 95  NVDIVTGGFPCQDFSVAG 112


>gi|15236318|ref|NP_193097.1| MEE57 (maternal effect embryo arrest 57); DNA
            (cytosine-5-)-methyltransferase/ DNA binding / protein
            binding [Arabidopsis thaliana]
 gi|4678387|emb|CAB41119.1| DNA (cytosine-5-)-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|7268065|emb|CAB78403.1| DNA (cytosine-5-)-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|332657902|gb|AEE83302.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
          Length = 1404

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 48/122 (39%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE+       +  ++ E    + + ++ N P T +F           
Sbjct: 972  LDIFAGCGGLSYGLEKAGVS---DTKWAIEYEEPAAQAFKQNHPKTTVFVDNCNVILRIS 1028

Query: 54   ---------------GDI-------------AKIKTQ---DIP---DHDVLLAGFPCQPF 79
                           GD+              K+       +P     D +  G PCQ F
Sbjct: 1029 WLRLLINDRAIMEKCGDVDDCISTTEAAELATKLDENQKSTLPLPGQVDFISGGPPCQGF 1088

Query: 80   SQ 81
            S+
Sbjct: 1089 SR 1090


>gi|113478056|ref|YP_724117.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110169104|gb|ABG53644.1| DNA-cytosine methyltransferase [Trichodesmium erythraeum IMS101]
          Length = 345

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+    E+     N       +I+P     Y+ N     I   +  I++ ++
Sbjct: 7  IDLFCGAGGLTHGFEKAGLPVN---VGY-DIDPVCKFPYEYNNKAKFILKSVEDIESMEL 62

Query: 65 PDHD------VLLAGFPCQPFS 80
            H       VL    PCQPFS
Sbjct: 63 AKHFPICHLKVLAGCSPCQPFS 84


>gi|302521589|ref|ZP_07273931.1| DNA methylase [Streptomyces sp. SPB78]
 gi|302430484|gb|EFL02300.1| DNA methylase [Streptomyces sp. SPB78]
          Length = 401

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG+ +          +      E++  +  T +         GD+      +
Sbjct: 6  IIDLFAGPGGLDI----AAKVLGIPSVG-IELDDDACAT-RTAAGLVTKQGDVCDFSATN 59

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
           P   VL  G PCQ ++ AG
Sbjct: 60 FPAATVLTGGPPCQTYTVAG 79


>gi|302520399|ref|ZP_07272741.1| DNA cytocine methyl transferase [Streptomyces sp. SPB78]
 gi|302429294|gb|EFL01110.1| DNA cytocine methyl transferase [Streptomyces sp. SPB78]
          Length = 434

 Score = 64.0 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 20/98 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---PY-------SVKTYQANFPNTL 51
             + DLF G GG+         H + E   ++++    P           TY+AN     
Sbjct: 38  YTVVDLFSGGGGMSYGFHA---HPSFEMRGAADVEVGKPSTGHGAIGCNATYEANIGVKP 94

Query: 52  IFGDIAKIKTQDIP-------DHDVLLAGFPCQPFSQA 82
           +  D+A I+  ++          DVLLA  PC  FS+A
Sbjct: 95  MAVDLAAIEADELAAQVAPPGGVDVLLACPPCTGFSRA 132


>gi|46906547|ref|YP_012936.1| C-5 cytosine-specific DNA methylase family protein [Listeria
          monocytogenes serotype 4b str. F2365]
 gi|46879812|gb|AAT03113.1| C-5 cytosine-specific DNA methylase family protein [Listeria
          monocytogenes serotype 4b str. F2365]
          Length = 469

 Score = 63.6 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 2  LKITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEIN--PYSVKTYQ---ANFPN-TLI 52
          L I  +F G+GG  + L    +          +S++      +   Y+     FP    I
Sbjct: 3  LNIFSMFDGVGGFIVGLNDANEAIEKEMFRTTYSNQFEPSKKAQDAYEVGLYRFPEMNHI 62

Query: 53 FGDIAKIKTQDIPD-HD----VLLAGFPCQPFSQA 82
            DI  +      + HD    +++ GFPCQ +S A
Sbjct: 63 PDDIMTVSDNKFQEMHDAGVNMIVGGFPCQDYSVA 97


>gi|309799879|ref|ZP_07694084.1| DNA-cytosine methyltransferase [Streptococcus infantis SK1302]
 gi|308116469|gb|EFO53940.1| DNA-cytosine methyltransferase [Streptococcus infantis SK1302]
          Length = 412

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 37/130 (28%), Gaps = 52/130 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------------- 42
               DLF G GG+     Q             E+NP++ +T                   
Sbjct: 11  YNFIDLFAGAGGLSEGFIQA----GFNPIAHVEMNPFAAQTLVTRSSYYYLKQAKQLDIY 66

Query: 43  YQANFPNTL----------------------------IFGDIAKI-KTQDIPDHDVLLAG 73
           YQ                                   IF  I  I K ++I   DV++ G
Sbjct: 67  YQYLRGEMTQEEFLQKIPKRIKKTVICETMSDTTLPSIFKTIDGIMKIRNIQSVDVVIGG 126

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 127 PPCQSYSLVG 136


>gi|62946656|gb|AAY22439.1| methylase [Listeria monocytogenes]
          Length = 469

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 2  LKITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEIN--PYSVKTYQ---ANFPN-TLI 52
          L I  +F G+GG  + L    +          +S++      +   Y+     FP    I
Sbjct: 3  LNIFSMFDGVGGFIVGLNDANEAIEKEMFRTTYSNQFEPSKKAQDAYEVGVYRFPEMNHI 62

Query: 53 FGDIAKIKTQDIPD-HD----VLLAGFPCQPFSQA 82
            DI  +      + HD    +++ GFPCQ +S A
Sbjct: 63 PDDIMTVSDNKFQEMHDAGVNMIVGGFPCQDYSVA 97


>gi|326441740|ref|ZP_08216474.1| C-5 cytosine-specific DNA methylase [Streptomyces clavuligerus
          ATCC 27064]
          Length = 187

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I  L  G GG+ L ++           + ++  P + +    ++P     GDI+ +   D
Sbjct: 13 IGSLCSGYGGLDLGVQSV---LGGRMAWHADTAPGASRILARHWPGVPNLGDISVVSWAD 69

Query: 64 IPDHDVLLAGFPCQ 77
          +    VL AGFPCQ
Sbjct: 70 VQGVCVLTAGFPCQ 83


>gi|33338827|gb|AAQ14149.1| Dmt, incomplete [Enterobacteria phage P1]
          Length = 638

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVWGTPCQAFSIAG 85


>gi|288801950|ref|ZP_06407391.1| modification methylase HgiDII (Cytosine-specific
          methyltransferase HgiDII) [Prevotella melaninogenica
          D18]
 gi|288335385|gb|EFC73819.1| modification methylase HgiDII (Cytosine-specific
          methyltransferase HgiDII) [Prevotella melaninogenica
          D18]
          Length = 355

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 18/95 (18%)

Query: 1  ML----KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGD 55
          M+    K  D  CG GG+   L Q      +      + +  + +TY+ N P ++ I  +
Sbjct: 1  MMASKYKAIDFLCGGGGMTCGLRQA----GINVIAGVDFDQDAKETYEYNNPGSVFIQKN 56

Query: 56 IAKIKTQ------DIPDHD---VLLAGFPCQPFSQ 81
          I  +++       +I  +D   +L+   PCQ +S 
Sbjct: 57 IKNLRSNYFERKFEIRKNDDFLILVGCSPCQFYSI 91


>gi|462658|sp|P34878|MTSB_LACLC RecName: Full=Modification methylase ScrFIB; Short=M.ScrFI-B;
           Short=M.ScrFIB; AltName: Full=Cytosine-specific
           methyltransferase ScrFIB
 gi|149495|gb|AAA16838.1| methyl-5-cytosine methylase [Lactococcus lactis]
 gi|2327032|gb|AAB66694.1| 5-methyl-cytosine-methyltransferase [Lactococcus lactis subsp.
           cremoris]
 gi|739995|prf||2004282A methyl-5-cytosine methyltransferase
          Length = 360

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 39/136 (28%), Gaps = 55/136 (40%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----------- 49
           ML++ + F G G  RL L +   +   E    SEI    + +Y A   N           
Sbjct: 1   MLRVFEAFAGYGSQRLALIKA--NIPHEIVGISEIEGDVLLSYSAIHENLLEERNKNIKL 58

Query: 50  ------------------------------------------TLIFGDIAKIKTQDIPDH 67
                                                        FGDI  I  + +PD 
Sbjct: 59  TDDEMRDYLKNINIPLDYKTFENRADKLGGQKLKDMYIANKLNKNFGDIRSIDPKKLPDF 118

Query: 68  DVLLAGFPCQPFSQAG 83
           D     FPCQ  S AG
Sbjct: 119 DFFTYSFPCQDISVAG 134


>gi|317148994|ref|XP_001823049.2| C-5 cytosine methyltransferase DmtA [Aspergillus oryzae RIB40]
          Length = 614

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI- 59
               D FCG GG+     +   +      ++ + + ++  TY+ NF +      DI    
Sbjct: 316 YTFGDGFCGAGGVSCGARRAGLYNK----WAFDNSEHATSTYRLNFEHAYCELSDIFSFL 371

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQA 82
               +    DV  +  PCQ +S A
Sbjct: 372 TSNDEFLRVDVSHSSPPCQTWSSA 395


>gi|238494284|ref|XP_002378378.1| C-5 cytosine methyltransferase DmtA [Aspergillus flavus NRRL3357]
 gi|220695028|gb|EED51371.1| C-5 cytosine methyltransferase DmtA [Aspergillus flavus NRRL3357]
          Length = 468

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI- 59
               D FCG GG+     +   +      ++ + + ++  TY+ NF +      DI    
Sbjct: 304 YTFGDGFCGAGGVSCGARRAGLYNK----WAFDNSEHATSTYRLNFEHAYCELSDIFSFL 359

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQA 82
               +    DV  +  PCQ +S A
Sbjct: 360 TSNDEFLRVDVSHSSPPCQTWSSA 383


>gi|83771786|dbj|BAE61916.1| unnamed protein product [Aspergillus oryzae]
          Length = 586

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI- 59
               D FCG GG+     +   +      ++ + + ++  TY+ NF +      DI    
Sbjct: 316 YTFGDGFCGAGGVSCGARRAGLYNK----WAFDNSEHATSTYRLNFEHAYCELSDIFSFL 371

Query: 60  -KTQDIPDHDVLLAGFPCQPFSQA 82
               +    DV  +  PCQ +S A
Sbjct: 372 TSNDEFLRVDVSHSSPPCQTWSSA 395


>gi|83310257|ref|YP_420521.1| site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82945098|dbj|BAE49962.1| Site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 620

 Score = 63.6 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-D 66
             GI          +     +  F +EI P+        +P     GD+  I        
Sbjct: 28  CSGI----EAATAAWEPLGWQAAFFAEIEPFPSTVLAHRYPAIPNLGDMTAIDGLAWRGK 83

Query: 67  HDVLLAGFPCQPFSQAG 83
            DVL+ G PCQ FS AG
Sbjct: 84  IDVLVGGTPCQAFSVAG 100


>gi|258611549|ref|ZP_05233453.2| methylase [Listeria monocytogenes FSL N3-165]
 gi|258601173|gb|EEW14498.1| methylase [Listeria monocytogenes FSL N3-165]
          Length = 469

 Score = 63.6 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 2  LKITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEIN--PYSVKTYQ---ANFPN-TLI 52
          L I  +F G+GG  + L    +          +S++      +   Y+     FP    I
Sbjct: 3  LNIFSMFDGVGGFIVGLNDANEAIEKEMFRTTYSNQFEPSKKAQDAYEVGVYRFPEMNHI 62

Query: 53 FGDIAKIKTQDIPD-HD----VLLAGFPCQPFSQA 82
            DI  +      + HD    +++ GFPCQ +S A
Sbjct: 63 PDDIMTVSDNKFQEMHDAGVNMIVGGFPCQDYSVA 97


>gi|333025812|ref|ZP_08453876.1| putative C-5 cytosine-specific DNA methylase [Streptomyces sp.
          Tu6071]
 gi|332745664|gb|EGJ76105.1| putative C-5 cytosine-specific DNA methylase [Streptomyces sp.
          Tu6071]
          Length = 503

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L  TDLFCG GG    L             ++     +V+T+ AN P    +  D+    
Sbjct: 3  LTFTDLFCGAGGSSTGLVAAGYDLR---LAANHW-QRAVETHAANHPGADHLCADVNNYD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +P  DVL A   C   S AG
Sbjct: 59 MRRLPRTDVLWASPICTEISPAG 81


>gi|315222611|ref|ZP_07864500.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
 gi|315188297|gb|EFU22023.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus
          F0211]
          Length = 317

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L + +LF GIG I+  L +       +     EI+   VK+Y A +        I     
Sbjct: 6  LNVLELFGGIGAIKKALIR--QKIPHKTLDYVEIDKNCVKSYNALYNTDFKPKSILDFHP 63

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
           D    D+L+ G PCQ FS++G
Sbjct: 64 PD-KRIDLLMHGSPCQDFSRSG 84


>gi|190571759|ref|YP_001966438.1| M2.LlaJI [Lactococcus lactis]
 gi|46487640|gb|AAS99178.1| M2.LlaJI [Lactococcus lactis]
          Length = 379

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L+   LF  +G      E   +   V+   ++EI+    + YQ  +PNT +I GDI +  
Sbjct: 4  LRGLSLFANVG----IAEAFLDEIGVDIKIANEIDKERARFYQDVYPNTNMICGDITEDT 59

Query: 61 TQDI-------PDHDVLLAGFPCQPFSQAG 83
          T+D+        D D ++A  PCQ  S+AG
Sbjct: 60 TRDLIVDLAIKEDVDFVIATPPCQGMSEAG 89


>gi|261414304|gb|ACX83570.1| DNA methyltransferase [Hieracium pilosella]
          Length = 1569

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 37/114 (32%)

Query: 1    MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------- 53
            +LK  D+F G GG+   L +          ++ E    +   ++ N P  L F       
Sbjct: 1127 ILKTLDIFAGCGGLSEGLTKAGASV---TKWAIEYEEPAGDAFRLNHPEALAFVHNCNVI 1183

Query: 54   --------GDI-------------AKIKTQDIPD------HDVLLAGFPCQPFS 80
                    GD+             AK+  + I +       D +  G PCQ FS
Sbjct: 1184 LRAIMTACGDVDDCISTTEADEQAAKLDEEMIKNLPRPGQVDFINGGPPCQGFS 1237


>gi|261414302|gb|ACX83569.1| DNA methyltransferase [Hieracium piloselloides]
          Length = 1547

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 37/114 (32%)

Query: 1    MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF------- 53
            +LK  D+F G GG+   L +          ++ E    +   ++ N P  L F       
Sbjct: 1106 ILKTLDIFAGCGGLSEGLTKAGASV---TKWAIEYEEPAGDAFRLNHPEALAFVHNCNVI 1162

Query: 54   --------GDI-------------AKIKTQDIPD------HDVLLAGFPCQPFS 80
                    GD+             AK+  + I +       D +  G PCQ FS
Sbjct: 1163 LRAIMTACGDVDDCISTTEADEQAAKLDEEMIKNLPRPGQVDFINGGPPCQGFS 1216


>gi|155370987|ref|YP_001426521.1| hypothetical protein ATCV1_Z040R [Acanthocystis turfacea
          Chlorella virus 1]
 gi|155124307|gb|ABT16174.1| hypothetical protein ATCV1_Z040R [Acanthocystis turfacea
          Chlorella virus 1]
          Length = 349

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +K  +LF G+GGI   L        V+     E    + +   A      + GD+ +   
Sbjct: 1  MKALELFAGVGGITHGL-----RGYVKPVAFVEYEKDAAEFLAAR--GKPVHGDVKEFDA 53

Query: 62 QDIP-DHDVLLAGFPC 76
           +   + D++ AG+PC
Sbjct: 54 TEYRGNIDIVTAGWPC 69


>gi|119467548|ref|XP_001257580.1| C-5 cytosine methyltransferase DmtA [Neosartorya fischeri NRRL 181]
 gi|119405732|gb|EAW15683.1| C-5 cytosine methyltransferase DmtA [Neosartorya fischeri NRRL 181]
          Length = 632

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIA--- 57
               D FCG GG+     +   H      ++ + +  ++ TY+ NF   +    DI    
Sbjct: 324 YTFGDGFCGAGGVSCGASKAGLH----IKWAFDKSENAITTYRLNFATAVCEACDIFCFL 379

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQA 82
             K +D+   DV     PCQ FS A
Sbjct: 380 TNKPEDL-KVDVSHGSPPCQTFSPA 403


>gi|291539768|emb|CBL12879.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 211

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 23/88 (26%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F  R  E  FS E +          F N  ++ DI+K
Sbjct: 1  MKVLELFAGTRSIG-------KAFESRGHE-VFSVEWSKD--------FENIDLYEDISK 44

Query: 59 IKTQDI----PDHDVLLAGFPCQPFSQA 82
          +  +DI       DV+ A   C  FS A
Sbjct: 45 VTAEDILRLFGKPDVIWASPDCSTFSIA 72


>gi|257413708|ref|ZP_04743935.2| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257202598|gb|EEV00883.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 212

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 23/88 (26%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F  R  E  FS E +          F N  ++ DI+K
Sbjct: 1  MKVLELFAGTRSIG-------KAFEQRGHE-VFSVEWSKD--------FENIDLYEDISK 44

Query: 59 IKTQDI----PDHDVLLAGFPCQPFSQA 82
          +  +DI       DV+ A   C  FS A
Sbjct: 45 VTAEDILKLFGKPDVIWASPDCATFSIA 72


>gi|254518451|ref|ZP_05130507.1| DNA-cytosine methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912200|gb|EEH97401.1| DNA-cytosine methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 413

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 49/124 (39%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA------------------- 45
            DLF G GG+    ++    +  + F   E++  +  T Q                    
Sbjct: 10  IDLFAGAGGLSEGFQR----KGFKFFAHVEMDKAACMTLQTRQAFYFLKRNRRLYIYESY 65

Query: 46  ------------NFPNTLIFGDI-AKIKTQDIPD-------------HDVLLAGFPCQPF 79
                       N PN +    I A+I    I D              DV++ G PCQ +
Sbjct: 66  LRGEISREELYSNVPNRIFKSIINAEINEDTIEDVFEKIDENRRNREVDVIIGGPPCQAY 125

Query: 80  SQAG 83
           S  G
Sbjct: 126 SVIG 129


>gi|190410730|ref|YP_001966068.1| DNA-cytosine methyltransferase [Thermus sp. 4C]
 gi|133753293|gb|ABO38149.1| M.TspMI [Thermus sp. manalii]
 gi|148608604|gb|ABQ95624.1| DNA-cytosine methyltransferase [Thermus sp. 4C]
          Length = 437

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 24/101 (23%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---------------PYSVKTYQANFP 48
           + DLF G GG+    +   +    +   + ++                     TY+AN  
Sbjct: 36  VVDLFSGAGGMSYGFKYWGDRL-YKIIGAVDLEVAKPSDSKAKKGGGGTNCNATYEANIG 94

Query: 49  NTLIFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQ 81
              +  DI ++  ++  ++         VL++  PC  FSQ
Sbjct: 95  IRPLKADITELNPREYRENLGLEVGQLGVLISCAPCTGFSQ 135


>gi|112983430|ref|NP_001036980.1| DNA cytosine-5 methyltransferase [Bombyx mori]
 gi|54888739|dbj|BAD67189.1| DNA cytosine-5 methyltransferase [Bombyx mori]
          Length = 1409

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI----- 56
            L+  D+F G GG+   L Q       EC ++ E    +   Y  N  + ++F +      
Sbjct: 946  LRTLDVFAGCGGLSEGLHQAGVA---ECKWAIENVEAASHAYSLNNKSCIVFNEDCNALL 1002

Query: 57   ------AKIKTQDIP-----DHDVLLAGFPCQPFS 80
                  AK     +      + ++L  G PCQ FS
Sbjct: 1003 KTVMSGAKHSANGLRLPMQGEVELLCGGPPCQGFS 1037


>gi|94263940|ref|ZP_01287743.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium
          MLMS-1]
 gi|93455685|gb|EAT05864.1| DNA (cytosine-5-)-methyltransferase [delta proteobacterium
          MLMS-1]
          Length = 366

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          + D FCG GG     ++      ++  F+ +  P +  T++ NFP T      I ++   
Sbjct: 12 VFDFFCGCGGTSRGFQKA----GIDVAFALDTGPDAKSTFERNFPGTFFCHKSINELNAS 67

Query: 63 DIPDH--------DVLLAGFPCQPFSQ 81
          D+            +     PCQPF++
Sbjct: 68 DLEPILQAHKNGYKLFCGCAPCQPFTR 94


>gi|46401691|ref|YP_006537.1| Dmt [Enterobacteria phage P1]
 gi|33338718|gb|AAQ14041.1| Dmt [Enterobacteria phage P1]
          Length = 754

 Score = 63.2 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLAHRWPHVANLGDMTKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          I   DVL+ G PCQ FS AG
Sbjct: 66 IESPDVLVWGTPCQAFSIAG 85


>gi|333024773|ref|ZP_08452837.1| putative DNA-cytosine methyltransferase [Streptomyces sp. Tu6071]
 gi|332744625|gb|EGJ75066.1| putative DNA-cytosine methyltransferase [Streptomyces sp. Tu6071]
          Length = 386

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 6  DLFCGIGGIRLDLEQ----TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          DLF G GG                      + E++P +  TY ANFP+  +    I    
Sbjct: 2  DLFAGAGGFSAGFHAYRPDGPASSPFRTLAAVEMDPAAAATYAANFPSAKVSAIRIEGWD 61

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
                 DV++ G PCQ FS
Sbjct: 62 PTPYEGVDVIMGGPPCQGFS 81


>gi|251773224|gb|EES53775.1| Site-specific DNA methylase-like protein [Leptospirillum
          ferrodiazotrophum]
          Length = 154

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           ++  G GG  L LEQ       +     E++ ++  + + N P   +I G++   K   
Sbjct: 5  LEICAGAGGQALGLEQA----GFDHSALVELDHHACASLRLNRPGWNVIEGNLQSFKGTP 60

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
              D+L  G PC PFS+ G
Sbjct: 61 FKGIDLLAGGVPCPPFSKDG 80


>gi|326955261|gb|AEA28956.1| C-5 cytosine-specific DNA methylase [Pseudonocardia dioxanivorans
          CB1190]
          Length = 595

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPN-TLIFGDIAKI 59
          + +TDLFCG GG     E       V+   +    +  +++T+  N P+      DIA+ 
Sbjct: 1  MTVTDLFCGAGGSSSGAESV---PGVKVRMACNHWDK-AIETHNFNMPHADHDIADIAET 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +  P  D+L A   C  +SQA
Sbjct: 57 DPRRYPHTDLLWASPSCTFWSQA 79


>gi|322380155|ref|ZP_08054396.1| putative cytosine-specific DNA methyltransferase (DDEM)
          [Helicobacter suis HS5]
 gi|321147420|gb|EFX42079.1| putative cytosine-specific DNA methyltransferase (DDEM)
          [Helicobacter suis HS5]
          Length = 100

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
           K+ D+FCG GG+     Q   +   +  ++ + +  ++ +Y++N P T  I  DI ++ 
Sbjct: 4  FKLADIFCGAGGLSYGFAQ---NALFDLVWALDYDLDALASYKSNHPTTNTICRDIVQLS 60

Query: 61 TQD---IPDHDVLLAGF 74
           ++       D+LL G 
Sbjct: 61 REECLGYGPIDILLGGP 77


>gi|311104267|ref|YP_003977120.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758956|gb|ADP14405.1| cytosine-specific methyltransferase [Achromobacter xylosoxidans
          A8]
          Length = 536

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +   ++E  + +EI P+        +P     GD+     +++   
Sbjct: 20 CSGI----EAVSLAWQPLDLEAAWFAEIEPFPSAVLAHRYPRVPNLGDMTAIARQVRAGT 75

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P  D+L+ G PCQ FS AG
Sbjct: 76 VPAPDILVGGTPCQSFSVAG 95


>gi|261736049|ref|YP_003257391.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          ZL12]
 gi|261349172|gb|ACX71104.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          ZL12]
          Length = 348

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG  +   +      ++     E +  + +T +A      I GD+      D
Sbjct: 2  ILDLFAGPGGWDVAATR----LGLDVIG-IEHDHSACETRRA-AGLATIEGDVRSYGVAD 55

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
           P    L+   PCQ FS AG
Sbjct: 56 FPAAQRLIGSPPCQSFSVAG 75


>gi|158321055|ref|YP_001513562.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158141254|gb|ABW19566.1| DNA-cytosine methyltransferase [Alkaliphilus oremlandii OhILAs]
          Length = 448

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 69/147 (46%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------------- 42
           + + DLF G GG+     +    +  E     E + ++ +T                   
Sbjct: 1   MVVIDLFSGAGGLTEGFMR----QGFEIVAHVEKDKWACETLKTRIIYHFLKSKNDLEIY 56

Query: 43  --------------------YQAN---------------FPNTLIFGDIAKIKT------ 61
                               Y+                 F N L   ++  I        
Sbjct: 57  FDYFKRVNGYRNIEESRQTIYRKYPEIKEKLQYEVLNKAFGNPLEEKNVTGIDEIIELLE 116

Query: 62  -----QDIPDHDVLLAGFPCQPFSQAG 83
                ++    D+++ G PCQ +S  G
Sbjct: 117 DSLKYKNYSSTDLIIGGPPCQAYSLVG 143


>gi|212639806|ref|YP_002316326.1| Site-specific DNA methylase [Anoxybacillus flavithermus WK1]
 gi|212561286|gb|ACJ34341.1| Site-specific DNA methylase [Anoxybacillus flavithermus WK1]
          Length = 469

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 40/119 (33%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL--------- 51
           M    DLF G GG+            ++   + E++ ++V+TY A+    +         
Sbjct: 24  MFTSIDLFAGPGGLATGFM----WSGIKPLIAVEMSYWTVQTYSASHNAEIFDLESFLSG 79

Query: 52  -----------------IFGDIAKIKTQDIPD----------HDVLLAGFPCQPFSQAG 83
                            I+GDI K+  + I             D++  G PC+ FS AG
Sbjct: 80  EMKDPDQFFRKSDRTLIIYGDINKVSNELISKILKQRFGVDSVDIVTGGAPCESFSMAG 138


>gi|256392223|ref|YP_003113787.1| C-5 cytosine-specific DNA methylase [Catenulispora acidiphila DSM
          44928]
 gi|256358449|gb|ACU71946.1| C-5 cytosine-specific DNA methylase [Catenulispora acidiphila DSM
          44928]
          Length = 483

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +  TD+FCG GG    L         E   ++  +  ++ T+ AN  N   +  D+    
Sbjct: 3  ITFTDIFCGAGGSSTGLVAA----GFELKLAANHSKVAISTHAANHGNAEHVCADVNNYD 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQAG 83
           + +P  DVL A   C   S AG
Sbjct: 59 MRRLPTTDVLWASPICTEISPAG 81


>gi|269955376|ref|YP_003325165.1| C-5 cytosine-specific DNA methylase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304057|gb|ACZ29607.1| C-5 cytosine-specific DNA methylase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 553

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
           L +TDLFCG GG         +   V+    ++  +  +++T+  N P+   +  DI++ 
Sbjct: 39  LTLTDLFCGAGGSSTG---AVSVPGVQVRLAANHWDK-AIETHNTNHPDVDHLQADISQT 94

Query: 60  KTQDIPDHDVLLAGFPCQPFSQA 82
             + +P  D+L A   C   S+A
Sbjct: 95  DPRYVPRTDMLWASPECTNHSRA 117


>gi|259046940|ref|ZP_05737341.1| modification methylase Sau3AI (cytosine-specificmethyltransferase
           Sau3AI) [Granulicatella adiacens ATCC 49175]
 gi|259036383|gb|EEW37638.1| modification methylase Sau3AI (cytosine-specificmethyltransferase
           Sau3AI) [Granulicatella adiacens ATCC 49175]
          Length = 451

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINP--YSVKTYQ---ANFPN-TLI 52
           LK+  +F G+GG  + L++     N    +   +++  P   +   ++    N+P     
Sbjct: 11  LKVFSMFDGVGGFIVGLDEANRKLNKKFFQVTDTNQFEPSRKAQDAFEVGVYNYPKINHS 70

Query: 53  FGDIAKIKTQDIPD-----HDVLLAGFPCQPFSQA 82
             DI ++ ++   +      ++++ GFPCQ +S A
Sbjct: 71  NEDIMQVSSEYFDEMKANGVNMIVGGFPCQDYSVA 105


>gi|52786706|ref|YP_092535.1| hypothetical protein BLi02974 [Bacillus licheniformis ATCC 14580]
 gi|319647238|ref|ZP_08001460.1| hypothetical protein HMPREF1012_02499 [Bacillus sp. BT1B_CT2]
 gi|52349208|gb|AAU41842.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317390585|gb|EFV71390.1| hypothetical protein HMPREF1012_02499 [Bacillus sp. BT1B_CT2]
          Length = 256

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK 60
           LK+   F   GG  +     +     +   + EI+P  +K Y+ N  P      DI    
Sbjct: 21  LKVFSTFSWGGGSSMG----YKLAGYDLLGNCEIDPQMMKIYRKNHNPIYPFLMDIRDFN 76

Query: 61  -----TQDIPDHDVLLAGFPCQPFSQAG 83
                  ++ D D+     PC  FS AG
Sbjct: 77  KMENLPDELFDLDIFDGSPPCSVFSIAG 104


>gi|225375639|ref|ZP_03752860.1| hypothetical protein ROSEINA2194_01264 [Roseburia inulinivorans
          DSM 16841]
 gi|225212496|gb|EEG94850.1| hypothetical protein ROSEINA2194_01264 [Roseburia inulinivorans
          DSM 16841]
          Length = 211

 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 23/88 (26%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F  R  E  FS E +          F N  ++ DI K
Sbjct: 1  MKVLELFAGTRSIG-------KAFESRGHE-VFSVEWSKD--------FENIDLYEDINK 44

Query: 59 IKTQDI----PDHDVLLAGFPCQPFSQA 82
          +  +DI       DV+ A   C  FS A
Sbjct: 45 VTAEDIIRLFGKPDVIWASPDCSTFSIA 72


>gi|254825117|ref|ZP_05230118.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL
          J1-194]
 gi|293594360|gb|EFG02121.1| DNA-cytosine methyltransferase [Listeria monocytogenes FSL
          J1-194]
          Length = 326

 Score = 62.9 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LKI +LF GIG  R  L         +     EI+  +V+ Y A +  T+    +     
Sbjct: 4  LKILELFGGIGAPRKALINLGIEH--KSIDYVEIDEKAVRAYNALYDKTIQPQSVVGYNL 61

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          +     D+L+ G PCQ FS+AG
Sbjct: 62 R----PDLLIHGSPCQDFSRAG 79


>gi|2906004|gb|AAC03766.1| C5-DNA-methyltransferase [Ascobolus immersus]
          Length = 1356

 Score = 62.9 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 29/105 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           LK  D+F G GG+ L L+ +     V+  +  E  P +  T   NFP+  +F        
Sbjct: 784 LKGLDIFAGCGGLTLGLDLSGA---VDTKWDIEFAPSAANTLALNFPDAQVFNQCANVLL 840

Query: 55  ------------DIA-KIKTQDIPD------HDVLLAGFPCQPFS 80
                       DI   ++ + +PD       D +  G PCQ FS
Sbjct: 841 SRAIQSEDEGSLDIEYDLQGRVLPDLPKKGEVDFIYGGPPCQGFS 885


>gi|262200549|ref|YP_003271757.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262083896|gb|ACY19864.1| DNA-cytosine methyltransferase [Gordonia bronchialis DSM 43247]
          Length = 399

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--------TLIF 53
          ++  +LF         L    +         +E + +S  T + N            +  
Sbjct: 1  MRSVELFA----GGGGLTLGTHLAGFTTEVVAEWDRWSCDTLRENRDGGYPLVRDIDVEE 56

Query: 54 GDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
          GD+  +    +P+  D++  G PCQPFS  G
Sbjct: 57 GDVRYVDWSSVPEGIDLVSGGPPCQPFSAGG 87


>gi|70984380|ref|XP_747703.1| C-5 cytosine methyltransferase DmtA [Aspergillus fumigatus Af293]
 gi|66845330|gb|EAL85665.1| C-5 cytosine methyltransferase DmtA [Aspergillus fumigatus Af293]
          Length = 628

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
               D FCG GG+     +   H      ++ + +  ++ TY+ NF   +    DI    
Sbjct: 324 YTFGDGFCGAGGVSCGASKAGLH----IKWAFDKSENAITTYRLNFATAVCEACDIFCFL 379

Query: 61  TQDIPD--HDVLLAGFPCQPFSQA 82
           T  + +   DV     PCQ FS A
Sbjct: 380 TNKLEELKVDVSHGSPPCQTFSPA 403


>gi|198475758|ref|XP_001357145.2| GA10499 [Drosophila pseudoobscura pseudoobscura]
 gi|198137946|gb|EAL34212.2| GA10499 [Drosophila pseudoobscura pseudoobscura]
          Length = 347

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           ++ +LF GIGG+    +      +     + ++N  +   Y  NF     +   +I  +
Sbjct: 3  FRVLELFSGIGGMHYAFKYA--QLDGNIVAAMDVNTVANAVY--NFALNCHVKTRNIQSL 58

Query: 60 KTQDIPD--HDVLLAGFPCQPFSQAG 83
            +++      +LL   PCQP ++ G
Sbjct: 59 SEKEVSKLGATMLLMSPPCQPHTRQG 84


>gi|195160038|ref|XP_002020883.1| GL16217 [Drosophila persimilis]
 gi|194117833|gb|EDW39876.1| GL16217 [Drosophila persimilis]
          Length = 347

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           ++ +LF GIGG+    +      +     + ++N  +   Y  NF     +   +I  +
Sbjct: 3  FRVLELFSGIGGMHYAFKYA--QLDGNIVAAMDVNTVANAVY--NFALNCHVKTRNIQSL 58

Query: 60 KTQDIPD--HDVLLAGFPCQPFSQAG 83
            +++      +LL   PCQP ++ G
Sbjct: 59 SEKEVSKLGATMLLMSPPCQPHTRQG 84


>gi|257877766|ref|ZP_05657419.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus
           EC20]
 gi|257811932|gb|EEV40752.1| C-5 cytosine-specific DNA methylase [Enterococcus casseliflavus
           EC20]
          Length = 416

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 39/111 (35%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------------YQA----NFP 48
            +LF G GG+    EQT      E   + E     V+T            Y +    NF 
Sbjct: 7   IELFAGAGGLLDGFEQTGF---YELLGAVEWMKPQVRTLINRLENKYDDQYASEKVLNFD 63

Query: 49  ----NTLIFGDIAKIKTQDI------------PDHDVLLAGFPCQPFSQAG 83
               + L+ G        +                DV+  G PCQ +S AG
Sbjct: 64  IQRTDELLHG----WDDDEFGFNTGLDSLVGNRKVDVISGGPPCQAYSLAG 110


>gi|159122489|gb|EDP47610.1| C-5 cytosine methyltransferase DmtA [Aspergillus fumigatus A1163]
          Length = 628

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
               D FCG GG+     +   H      ++ + +  ++ TY+ NF   +    DI    
Sbjct: 324 YTFGDGFCGAGGVSCGASKAGLH----IKWAFDKSENAITTYRLNFATAVCEACDIFCFL 379

Query: 61  TQDIPD--HDVLLAGFPCQPFSQA 82
           T  + +   DV     PCQ FS A
Sbjct: 380 TNKLEELKVDVSHGSPPCQTFSPA 403


>gi|29832079|ref|NP_826713.1| type II restriction-modification system DNA cytosine-specific
           methylase [Streptomyces avermitilis MA-4680]
 gi|29609197|dbj|BAC73248.1| putative type II restriction-modification system DNA
           cytosine-specific methylase [Streptomyces avermitilis
           MA-4680]
          Length = 515

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
           DLFCG GG             V+  F++     ++ ++QAN P+      DI++++    
Sbjct: 53  DLFCGAGGSSTG---AAMVPGVQVAFAANHARDAIDSHQANHPDADHDLADISEVEPTRY 109

Query: 65  PDHDVLLAGFPCQPFSQA 82
           P  D+L A   C   S A
Sbjct: 110 PRTDLLWASPACTAHSLA 127


>gi|28869583|ref|NP_792202.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
          syringae pv. tomato str. DC3000]
 gi|28852825|gb|AAO55897.1| C-5 cytosine-specific DNA methylase family protein [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 295

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKI 59
          M    DLF G+GG      +      V+  +++   P +V  + AN P+ +    D+ + 
Sbjct: 1  MPTAIDLFAGLGGWSNGARRA----GVKVLWAANHWPVAVGWHSANHPDAIHVCQDLHQA 56

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
              +P H ++LA   CQ  S+A
Sbjct: 57 DWSKVPAHGIMLASPCCQGHSKA 79


>gi|312794286|ref|YP_004027209.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181426|gb|ADQ41596.1| DNA-cytosine methyltransferase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 419

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 55/130 (42%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-------------------YQA 45
            DLF G GG+     +      +      E + Y  +T                   Y+ 
Sbjct: 9   VDLFAGAGGLMEGFRRA----GINFIAHVEKDKYCCQTLQTRLIYHFLRENGEEDLYYKY 64

Query: 46  NFPNTL----------IFGDIAK------IKTQDIP----------------DHDVLLAG 73
            +               FG I+K      I  + +P                + D+L+ G
Sbjct: 65  LYGEITREEFVNLYPDEFGQISKTIINIEINDKTLPYIVDRINCLMREKGLKNIDLLIGG 124

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 125 PPCQAYSLVG 134


>gi|269114810|ref|YP_003302573.1| Cytosine-specific DNA methyltransferase/Type II site-specific
          deoxyribonuclease [Mycoplasma hominis]
 gi|268322435|emb|CAX37170.1| Cytosine-specific DNA methyltransferase/Type II site-specific
          deoxyribonuclease [Mycoplasma hominis ATCC 23114]
          Length = 553

 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K  +LF         L         E     E N  +  T + N PN  ++  DI K+ 
Sbjct: 1  MKSIELFA----GAGGLALGLEMAGFEHIGLVEFNKSAADTLKVNRPNWNVLCEDIEKVA 56

Query: 61 TQDIPD--------HDVLLAGFPCQPFSQAG 83
           +D+           D+L  G PCQ FS AG
Sbjct: 57 ARDLKKEFNIEKGSLDLLSGGAPCQSFSYAG 87


>gi|187736717|ref|YP_001840974.1| hypothetical protein pEspB_p20 [Exiguobacterium arabatum]
 gi|183223750|emb|CAQ35235.1| m5C DNA methyltransferase M.Lsp1109I [Exiguobacterium arabatum]
          Length = 377

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTF-----NHRNVECF--FSSEINPYSVKTYQANF-----P 48
          + K  +LF G GG+ L  +         +        +S++ +  + KT++ N       
Sbjct: 2  IFKKGELFNGPGGLSLGAKNARVIHPETNEEYRIVHEWSNDYDEQACKTFRFNICDDIDD 61

Query: 49 NTLIFGDIAKIKTQD---IPDHDVLLAGFPCQPFSQAG 83
          N++  G + ++   D   + D D    GFPC  +SQ G
Sbjct: 62 NSVHHGPVEQLPIGDKSVLGDIDCFAFGFPCNDYSQVG 99


>gi|89055380|ref|YP_510831.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
 gi|88864929|gb|ABD55806.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
          Length = 373

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
              DLFCG GG+   LE             +++   + +T++A  P    I G I ++ 
Sbjct: 3  YTAIDLFCGAGGLSAGLEMA----GFTVLAGNDLFDAAGRTFEATHPRAKFISGPIEELS 58

Query: 61 TQDIPDHD--------VLLAGFPCQPFSQ 81
           + + +          VL+ G PCQ +S 
Sbjct: 59 VERLMEVTGLRKGELSVLVGGPPCQAYSV 87


>gi|302900266|ref|XP_003048231.1| hypothetical protein NECHADRAFT_39810 [Nectria haematococca mpVI
           77-13-4]
 gi|256729163|gb|EEU42518.1| hypothetical protein NECHADRAFT_39810 [Nectria haematococca mpVI
           77-13-4]
          Length = 1354

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  DLFCG G     LE       +E  ++++ N  ++ TY AN       +   G I 
Sbjct: 823 LRGLDLFCGGGNFGRGLEDGG---GIEMRWANDFNEKAMHTYMANTAGPGAVSPFLGSID 879

Query: 58  KIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
           +++          ++P   D D +  G PC  FS 
Sbjct: 880 ELQRLAIQGEFANNVPLVGDVDFISGGSPCPGFSL 914


>gi|126668652|ref|ZP_01739604.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
 gi|126626911|gb|EAZ97556.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
          Length = 347

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-NFPNTLIFGDIAKIK 60
          +   DLFCG GG+   L +      V      ++       Y+  N+    +  D+ ++ 
Sbjct: 4  ITAIDLFCGAGGLTHGLIKA----GVNVIAGVDVQKSCKYAYEKNNYGAEFVNMDVRELT 59

Query: 61 TQDI----PDHDV--LLAGFPCQPFS 80
            ++    P   V  L    PCQPFS
Sbjct: 60 GMELNALYPKKSVRLLAGCAPCQPFS 85


>gi|119897062|ref|YP_932275.1| C-5 cytosine-specific DNA methylase [Azoarcus sp. BH72]
 gi|119669475|emb|CAL93388.1| probable C-5 cytosine-specific DNA methylase [Azoarcus sp. BH72]
          Length = 434

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPN-TLIFGDIAKIKTQDIP 65
          G+ L L++T      E     E       T + N       PN  +  GDI  +    + 
Sbjct: 2  GLDLGLDRTGR---YEIVACVEKEKVFCNTIRQNSAAGRINPNLKVFEGDINDLDPAQVL 58

Query: 66 D--------HDVLLAGFPCQPFSQAG 83
          D         D+L+ G PCQ FS AG
Sbjct: 59 DSVNLKPGEVDLLVGGPPCQSFSTAG 84


>gi|233770212|gb|ACQ91179.1| Met1-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 1557

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L Q          ++ E    + + +Q N P + +F           
Sbjct: 1119 LDIFAGCGGLSEGLHQAGVSI---TKWAIEYEEPAGQAFQLNHPESKVFINNCNVILKAV 1175

Query: 54   ----GD----IAKIKTQDIPD---------------HDVLLAGFPCQPFS 80
                GD    I+     D+                  D +  G PCQ FS
Sbjct: 1176 MDKCGDTDDCISTTDANDLASALDEKEKSDLPLPGQVDFINGGPPCQGFS 1225


>gi|233770210|gb|ACQ91178.1| Met1-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 1565

 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L Q          ++ E    + + +Q N P + +F           
Sbjct: 1127 LDIFAGCGGLSEGLHQAGVSI---TKWAIEYEEPAGQAFQLNHPESKVFINNCNVILKAV 1183

Query: 54   ----GD----IAKIKTQDIPD---------------HDVLLAGFPCQPFS 80
                GD    I+     D+                  D +  G PCQ FS
Sbjct: 1184 MDKCGDTDDCISTTDANDLASALDEKEKSDLPLPGQVDFINGGPPCQGFS 1233


>gi|227874220|ref|ZP_03992420.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
 gi|227839928|gb|EEJ50358.1| DNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268]
          Length = 336

 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ML   +LF         L         +     E N  +  T   N PN  +I  DIA I
Sbjct: 1  MLTAIELFA----GAGGLALGLEKAGFQSLGLIEFNQDACNTLSKNRPNWRVICEDIANI 56

Query: 60 KTQDIPDH--------DVLLAGFPCQPFSQAG 83
             D+  +        D+L  G PCQ FS AG
Sbjct: 57 SKLDLEQYFSIKKGELDLLSGGAPCQAFSYAG 88


>gi|316977147|gb|EFV60295.1| putative type II DNA modification methyltransferase [Trichinella
          spiralis]
          Length = 298

 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          +I +LF GIGG         +        + +I+     TY ANF  +     +I  +  
Sbjct: 8  RILELFAGIGG---------SKVKYVPVGAYDIDETCNSTYVANFGGDIFRRRNICSLTW 58

Query: 62 QDIPDH--DVLLAGFPCQPFSQAG 83
           ++     D  +   PCQPF  +G
Sbjct: 59 NELDQLQSDFWMLSPPCQPFMLSG 82


>gi|253997214|ref|YP_003049278.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
 gi|253983893|gb|ACT48751.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
          Length = 358

 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF------FSSEINPYSVKTYQANFP----NTL 51
          LKI +LFCG GGI    E        +        ++ + +  +VKTY  N      +T 
Sbjct: 4  LKIGELFCGPGGIAYGAELANLELIGQTATTLKHAWAVDYHQSTVKTYLKNIKGANEHTT 63

Query: 52 IFGDIAKIKTQD---IPDHDVLLAGFPCQPFSQAG 83
          +  D+  +   +   I + D    GFPC  FS+ G
Sbjct: 64 LCSDVRDLNIPELSKISEIDGFAYGFPCNDFSRVG 98


>gi|313625252|gb|EFR95088.1| modification methylase Sau3AI [Listeria innocua FSL J1-023]
          Length = 227

 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 2  LKITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEIN--PYSVKTYQ---ANFPN-TLI 52
          L I  +F G+GG  + L    +          +S++      +   Y+     FP    I
Sbjct: 3  LNIFSMFDGVGGFIVGLNDANEAIEKEMFRTTYSNQFEPSKKAQDAYEVGVYRFPKMNHI 62

Query: 53 FGDIAKIKTQDIPD-HD----VLLAGFPCQPFSQA 82
            DI  +      + HD    +++ GFPCQ +S A
Sbjct: 63 PDDIMTVSDNKFQEMHDAGVNMIVGGFPCQDYSVA 97


>gi|327438866|dbj|BAK15231.1| site-specific DNA methylase [Solibacillus silvestris StLB046]
          Length = 392

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 1  MLKITDLFCGIGGIRLDLEQT-------FNHRNVECFFSSEINPYSVKTYQANFPN---- 49
          + K  +LF G GG+ L  + T            +E  +S++ +  + +TY  N       
Sbjct: 2  IFKKGELFNGPGGLSLAAKNTVVIHPETLEEFRIEHTWSNDFDQNACRTYALNICGDEND 61

Query: 50 -TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++I G + K++   +P+      GFPC  +S  G
Sbjct: 62 PSVICGPVEKLQINQLPEIQCFAFGFPCNDYSLVG 96


>gi|317126940|ref|YP_004093222.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
 gi|315471888|gb|ADU28491.1| DNA-cytosine methyltransferase [Bacillus cellulosilyticus DSM
          2522]
          Length = 382

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTF-------NHRNVECFFSSEINPYSVKTYQANF-----P 48
          + +  +LF G GG+ L  +              ++  +S++ +  + KTY  N       
Sbjct: 2  IFRKGELFNGPGGLALGAKNAGFIHPETGEEWKIQHVWSNDYDSNACKTYGYNICGDEND 61

Query: 49 NTLIFGDIAKI---KTQDIPDHDVLLAGFPCQPFSQAG 83
           ++  G +  +       I D D    GFPC  +SQ G
Sbjct: 62 ESVHIGPVENLPIGNKDVIGDIDCFAFGFPCNDYSQVG 99


>gi|318057151|ref|ZP_07975874.1| DNA-cytosine methyltransferase [Streptomyces sp. SA3_actG]
 gi|318076183|ref|ZP_07983515.1| DNA-cytosine methyltransferase [Streptomyces sp. SA3_actF]
          Length = 386

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 6  DLFCGIGGIRLDLEQ----TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          DLF G GG                      + E++P +  TY ANFP+  +    I    
Sbjct: 2  DLFAGAGGFSAGFHAYRPHGPASSPFRALAAVEMDPAAAATYAANFPSAKVSAIRIEGWD 61

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
                 DV++ G PCQ FS
Sbjct: 62 PTPYEGVDVIMGGPPCQGFS 81


>gi|290960099|ref|YP_003491281.1| hypothetical protein SCAB_57141 [Streptomyces scabiei 87.22]
 gi|260649625|emb|CBG72740.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 414

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 22/96 (22%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FP-------NTLIFGD 55
          ++  G GG  + L         +     E + ++V+T +AN   +P       + L   D
Sbjct: 2  EICAGAGGQAVGLHNA----GFDHLALVEWDQHAVRTLRANVHDWPGWDKSRIDALEPMD 57

Query: 56 IAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
          + +     +         D D+L  G PC PFS AG
Sbjct: 58 VREFLGSKVHTSLDLEKGDLDLLAGGVPCPPFSLAG 93


>gi|161870058|ref|YP_001599227.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis 053442]
 gi|161595611|gb|ABX73271.1| modification methylase (cytosine-specific DNA methylase)
          [Neisseria meningitidis 053442]
          Length = 340

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
          +KI   DLFCG GG+   L +      ++     +I+      Y+ N      I  D+  
Sbjct: 1  MKIEAVDLFCGAGGLTAGLLRA----GIKVKAGYDIDAACAYAYEYNNKGAKFILQDVET 56

Query: 59 IKTQDIPDH---D---VLLAGFPCQPFS 80
          +    I  H   D   +L    PCQPFS
Sbjct: 57 VTGDQIQAHYSKDAVRLLAGCAPCQPFS 84


>gi|322801270|gb|EFZ21957.1| hypothetical protein SINV_06528 [Solenopsis invicta]
          Length = 1113

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 3   KITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD---IA 57
           ++  LF G+  G  L L++      VE +++SEI+  ++    A+F + + + GD   I 
Sbjct: 791 RVLSLFDGLSTGF-LVLQKLG--LVVEVYYASEIDVNALTISSAHFGDRISYLGDVRGIT 847

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQ 81
           K K Q+I   D+L+ G PC   S 
Sbjct: 848 KEKIQEIAPIDLLIGGSPCNDLSL 871


>gi|116062016|dbj|BAF34636.1| DNA methyltransferase 1b [Brassica rapa]
          Length = 1519

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------------ 52
             D+F G GG+   LEQ          ++ E    + + ++ N P T +            
Sbjct: 1082 LDIFAGCGGLSQGLEQAGVSA---TKWAIEYEGPAGEAFRKNHPETTVIVDNCNVTLRAI 1138

Query: 53   ---FGD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 1139 MEKCGDQDECISTTEANELAAKLDENQKRTLPLPGQVDFINGGPPCQGFS 1188


>gi|311899150|dbj|BAJ31558.1| putative modification methylase [Kitasatospora setae KM-6054]
          Length = 430

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFG-- 54
           L   ++  G GG  + L +             EI+ ++VKT + N           +G  
Sbjct: 8   LTSIEICAGAGGQAVGLHKA----GFSHLALVEIDQHAVKTLRKNVERPPRGGEDPWGWE 63

Query: 55  ---------DIAKIKTQD-IPDH-----DVLLAGFPCQPFSQAG 83
                    D+ + K  + +PD       +L  G PC PFS AG
Sbjct: 64  RDNCLILERDVKEFKPSEKLPDLKPGQLTLLAGGVPCPPFSIAG 107


>gi|328708218|ref|XP_003243626.1| PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Acyrthosiphon
           pisum]
          Length = 1227

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           L+  D+F G GG+   LE +    +    ++ E +  +   ++ N P   +F        
Sbjct: 762 LRGLDIFAGCGGLSRGLEDSGLVISN---WAIECDDKAAGAFKLNNPEATVFVEDCNHLL 818

Query: 54  -----GDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                G+ +  K Q+IP   + D +  G PCQ FS
Sbjct: 819 KLAMAGEKSNSKNQNIPQKGEVDFICGGPPCQGFS 853


>gi|323178455|gb|EFZ64033.1| modification methylase NgoMIV [Escherichia coli 1180]
          Length = 377

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDI------- 56
           ++  G GG  L L               EI+P + +T + N   ++L + +I       
Sbjct: 7  VEICAGAGGQALGLHNA----GFTHRALVEIDPAACETLRLNNELHSLGWENIIEGCVKH 62

Query: 57 -AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           A+    +  D D++  G PC PFS+AG
Sbjct: 63 FAEHTAYNFSDIDLVAGGVPCPPFSKAG 90


>gi|260866454|ref|YP_003232856.1| putative DNA modification methylase [Escherichia coli O111:H-
          str. 11128]
 gi|257762810|dbj|BAI34305.1| predicted DNA modification methylase [Escherichia coli O111:H-
          str. 11128]
          Length = 356

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDI------- 56
           ++  G GG  L L               EI+P + +T + N   ++L + +I       
Sbjct: 7  VEICAGAGGQALGLHNA----GFTHRALVEIDPAACETLRLNNELHSLGWENIIEGCVKH 62

Query: 57 -AKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           A+    +  D D++  G PC PFS+AG
Sbjct: 63 FAEHTAYNFSDIDLVAGGVPCPPFSKAG 90


>gi|318042684|ref|ZP_07974640.1| DNA-cytosine methyltransferase [Synechococcus sp. CB0101]
          Length = 361

 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L   + F G GG+ L LE+       +  ++ + +  SV T+  N        D  ++ +
Sbjct: 4  LTCIESFSGPGGMSLGLERA----GFQLLYAFDNDAPSVVTHNLNLNGKCFQLDARQVDS 59

Query: 62 QDI--------PDHDVLLAGFPCQPFS 80
           ++         D D+   G PCQ FS
Sbjct: 60 VELLAQCGLSVGDLDLFSGGPPCQGFS 86


>gi|301348510|ref|ZP_07229251.1| DNA-cytosine methyltransferase [Acinetobacter baumannii AB056]
          Length = 62

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
          +K+ D F G GG    L Q      ++     + +  + +TYQANFP  L +  DI ++ 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDITIGLDFDIKAAETYQANFPEALFYNVDIRELD 56

Query: 61 TQDI 64
           +++
Sbjct: 57 EKEL 60


>gi|262118158|ref|YP_003275928.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
 gi|262088068|gb|ACY24035.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
           43247]
          Length = 652

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
            DLF G GG+ L +E+           ++  N Y V+ ++AN P+   +  IA +     
Sbjct: 27  LDLFSGFGGLTLGIEKA----GFTTILAANHNQYKVEVHEANHPHVQHW--IADLINPEV 80

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
                 +D+P  D+L+AG  C   SQA
Sbjct: 81  PAYHSVRDLPAADLLVAGVTCTNHSQA 107


>gi|224011395|ref|XP_002295472.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209583503|gb|ACI64189.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 738

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 23/92 (25%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---------- 53
           + DLF G GG+ + LE+   +   +     +  P +  T + NFPNTL++          
Sbjct: 411 VLDLFAGGGGMSVGLERAGFNVKYKV----DNEPSACDTLEKNFPNTLVYRMSLRRFLEE 466

Query: 54  ---GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
              G   KI    I    VL     CQ +S A
Sbjct: 467 HKAGQ-TKIFPSTIVLLQVL-----CQGYSSA 492


>gi|260459541|ref|ZP_05807795.1| DNA methyltransferase [Mesorhizobium opportunistum WSM2075]
 gi|259034343|gb|EEW35600.1| DNA methyltransferase [Mesorhizobium opportunistum WSM2075]
          Length = 135

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----------N 49
          ML    +  GI          +        F SEI  +       ++             
Sbjct: 1  MLTYGSVCSGI----EAASVAWEPLGWRPKFFSEIEAFPSAVLAHHYGSNLPGEPLSKNG 56

Query: 50 TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             +GD   I     P  D+L+ G PCQ FS AG
Sbjct: 57 VPNYGDFTSIPGDAGP-VDLLVGGTPCQSFSVAG 89


>gi|317483226|ref|ZP_07942221.1| C-5 cytosine-specific DNA methylase [Bifidobacterium sp.
          12_1_47BFAA]
 gi|316915295|gb|EFV36722.1| C-5 cytosine-specific DNA methylase [Bifidobacterium sp.
          12_1_47BFAA]
          Length = 349

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+   DLFCG GG+ L L+Q      V      +        Y+ N     +   + ++ 
Sbjct: 1  MISAIDLFCGTGGLSLGLKQG----GVRVVAGIDNAASCAYPYEENIKAKFVRESVREVT 56

Query: 61 TQDIP------DHDVLLAGFPCQPFS 80
            ++          +L    PCQPFS
Sbjct: 57 GDELKRLWGRSSVRLLAGCAPCQPFS 82


>gi|291303703|ref|YP_003514981.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572923|gb|ADD45888.1| C-5 cytosine-specific DNA methylase [Stackebrandtia nassauensis
          DSM 44728]
          Length = 552

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          L I D FCG GG    ++       VE   ++     ++ ++ ANFP+     GDI K+ 
Sbjct: 3  LTIMDWFCGAGGSSQGIDAV---PGVEVTLAANHWQLALDSHAANFPHVDHKIGDIRKLP 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           QD P  D   A   C+ FS A
Sbjct: 60 VQDWPIADGFWASPECKKFSSA 81


>gi|183230936|ref|XP_655267.2| DNA (cytosine-5)-methyltransferase [Entamoeba histolytica
          HM-1:IMSS]
 gi|45505012|gb|AAS66974.1| 5-cytosine DNA methyltransferase [Entamoeba histolytica]
 gi|169802689|gb|EAL49892.2| DNA (cytosine-5)-methyltransferase, putative [Entamoeba
          histolytica HM-1:IMSS]
          Length = 322

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           + + F GIGG+R   E++  + N       +IN  + K Y  NF   +   ++  I  +
Sbjct: 7  NVIEFFSGIGGLRSSYERSSININATFIPF-DINEIANKIYSKNFKEEVQVKNLDSISIK 65

Query: 63 DIP--DHDVLLAGFPCQPF 79
           I   + +      PCQP+
Sbjct: 66 QIESLNCNTWFMSPPCQPY 84


>gi|320458138|dbj|BAJ68759.1| DNA methylase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 349

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+   DLFCG GG+ L L+Q      V      +        Y+ N     +   + ++ 
Sbjct: 1  MISAIDLFCGTGGLSLGLKQG----GVRVVAGIDNAASCAYPYEENIKAKFVRKSVREVT 56

Query: 61 TQDIP------DHDVLLAGFPCQPFS 80
            ++          +L    PCQPFS
Sbjct: 57 GDELKRLWGRSSVRLLAGCAPCQPFS 82


>gi|303285424|ref|XP_003062002.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226456413|gb|EEH53714.1| DNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 338

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIK 60
          +  + +CG+GG+   L +     +     + ++NP++  TY  NF +    I  ++A   
Sbjct: 13 RALEFYCGVGGLHYALLRA--RPDATVAAAFDLNPHACDTYAFNFGDAARPIARNLASYP 70

Query: 61 TQDIPDH--DVLLAGFPCQPFSQAG 83
             I  H   + L   PCQPF++ G
Sbjct: 71 AASIDAHAASLWLLSPPCQPFTRQG 95


>gi|226305778|ref|YP_002765738.1| hypothetical protein RER_22910 [Rhodococcus erythropolis PR4]
 gi|226184895|dbj|BAH32999.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 513

 Score = 61.3 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNTLI-FGDIAK 58
          M+ +TDLFCG GG      Q      V     ++  +  +++T+  N P T     D+++
Sbjct: 1  MITMTDLFCGAGGSSTGAVQV---PGVSVRMAANHWD-LAIETHNTNHPTTDHACADLSQ 56

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQA 82
          +  +  P  D+L A   C   SQA
Sbjct: 57 VDPRLFPRTDLLWASPECTNHSQA 80


>gi|319776379|ref|YP_004138867.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae F3047]
 gi|329123543|ref|ZP_08252106.1| modification methylase HphIA [Haemophilus aegyptius ATCC 11116]
 gi|317450970|emb|CBY87199.1| Putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae F3047]
 gi|327470359|gb|EGF15817.1| modification methylase HphIA [Haemophilus aegyptius ATCC 11116]
          Length = 79

 Score = 61.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  +            S E+ P   +TY+ NFP+  ++  D+ ++ 
Sbjct: 3  LTYLDLFSGAGGLSLGFDYA----GFRQLLSIELEPVYCETYRVNFPHHRVLQQDLTQLS 58

Query: 61 TQ-------DIPD 66
           +       DIP+
Sbjct: 59 NEQASLYHSDIPN 71


>gi|291539093|emb|CBL12204.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 212

 Score = 61.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 23/88 (26%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F  R  E  FS E +          F N  ++ DI++
Sbjct: 1  MKVLELFAGTRSIG-------KAFEQRGHE-VFSVEWSKE--------FENIDLYEDISR 44

Query: 59 IKTQDI----PDHDVLLAGFPCQPFSQA 82
          +  +DI       DV+ A   C  FS A
Sbjct: 45 VTAEDILKLFGKPDVIWASPDCATFSIA 72


>gi|257387778|ref|YP_003177551.1| DNA methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257170085|gb|ACV47844.1| DNA methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 239

 Score = 61.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DL  G+GG     E   N R      + EI           F    I  D+  ++  D+
Sbjct: 14 LDLCAGLGGFSSAFEDAENWR----VVTVEIEEE--------F-EPDICADVLNLRPADL 60

Query: 65 PDHDVLLAGFPCQPFSQA 82
          P  D++LA  PC  FS+A
Sbjct: 61 PAADIVLASPPCTTFSKA 78


>gi|331703222|ref|YP_004399909.1| cytosine specific DNA methyltransferase Sau96I [Mycoplasma
          mycoides subsp. capri LC str. 95010]
 gi|328801777|emb|CBW53930.1| Cytosine specific DNA methyltransferase Sau96I [Mycoplasma
          mycoides subsp. capri LC str. 95010]
          Length = 342

 Score = 61.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI--------PDHDV 69
          EQ             E +  +V+T + N PN  +IF D+ K+  +D+         + D+
Sbjct: 22 EQAGFEH----IGLVEFDKQAVETLKFNRPNWNIIFEDVQKVSQRDLKKEFNLKERELDL 77

Query: 70 LLAGFPCQPFSQAG 83
          L  G PCQ FS AG
Sbjct: 78 LSGGAPCQSFSYAG 91


>gi|254413124|ref|ZP_05026896.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180288|gb|EDX75280.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 416

 Score = 61.3 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 29/106 (27%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFP------NTL 51
           K+   F G G + L  E +      +  + +EINP  ++ Y+      N P      +  
Sbjct: 6   KLFSFFAGTGFLDLGFEAS----GFDIVYVNEINPSYMEAYRYSRQVLNLPLPEYGYHYA 61

Query: 52  IFGDIAKIKTQD--------IPDH----DVL--LAGFPCQPFSQAG 83
             G+I ++   +        I D     D++  + G PC  FS  G
Sbjct: 62  DNGNIEQLTEGEKALRLWYLIQDARKSTDIVGFIGGPPCPDFSVGG 107


>gi|296425866|ref|XP_002842459.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638727|emb|CAZ86650.1| unnamed protein product [Tuber melanosporum]
          Length = 857

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               D FCG GG+             +  +S + N  +V TY+ NFP    +        
Sbjct: 523 YTFGDAFCGGGGMSSGARAA----GFKNAWSFDSNSEAVSTYRRNFPQCTTYHS----TV 574

Query: 62  QDI-----PD--HDVLLAGFPCQPFSQA 82
            D      P+   DV+    PCQP S A
Sbjct: 575 NDFLTLRHPELLVDVVHLSPPCQPHSPA 602


>gi|305662550|ref|YP_003858838.1| DNA-cytosine methyltransferase [Ignisphaera aggregans DSM 17230]
 gi|304377119|gb|ADM26958.1| DNA-cytosine methyltransferase [Ignisphaera aggregans DSM 17230]
          Length = 320

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 23 NHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI-----PDHDVLLAGFPC 76
               +   + + +P   KTY++NFP  T++  DI  I   DI         +++   PC
Sbjct: 23 KRGGFKILVAIDNDPACAKTYKSNFPEATVVVEDIRNINGNDIIHLAKQKPLIVIGSPPC 82

Query: 77 QPFSQA 82
          +PF+ A
Sbjct: 83 EPFTGA 88


>gi|326485515|gb|EGE09525.1| DNA methyltransferase Dim-2 [Trichophyton equinum CBS 127.97]
          Length = 1090

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  +LF G G     LE+      +E  ++ E     + TY+AN P+     L  G + 
Sbjct: 637 LKALNLFSGGGTFDRGLEEGGA---IESKWAVEWGLQQMLTYRANHPDAKGLKLFCGSVN 693

Query: 58  K-----IKTQD------IPDHDVLLAGFPCQPFSQA 82
                 I  ++      I D   + AG PCQ +S A
Sbjct: 694 DYLFQAITGKENTYVARIGDVHFISAGSPCQGYSSA 729


>gi|326476794|gb|EGE00804.1| hypothetical protein TESG_08096 [Trichophyton tonsurans CBS 112818]
          Length = 986

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  +LF G G     LE+      +E  ++ E     + TY+AN P+     L  G + 
Sbjct: 533 LKALNLFSGGGTFDRGLEEGGA---IESKWAVEWGLQQMLTYRANHPDAKGLKLFCGSVN 589

Query: 58  K-----IKTQD------IPDHDVLLAGFPCQPFSQA 82
                 I  ++      I D   + AG PCQ +S A
Sbjct: 590 DYLFQAITGKENTYVARIGDVHFISAGSPCQGYSSA 625


>gi|229847093|ref|ZP_04467198.1| modification methylase BepI-like protein [Haemophilus influenzae
           7P49H1]
 gi|229809922|gb|EEP45643.1| modification methylase BepI-like protein [Haemophilus influenzae
           7P49H1]
          Length = 395

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 14/71 (19%)

Query: 27  VECFFSSEINPYSVK---TY----QANFPNTLIFGDIAKIKTQD------IP-DHDVLLA 72
            E  F+++I P +     +Y    +AN         I  +  ++       P D D+L  
Sbjct: 40  FETIFANDIKPDAKAAWVSYFLDQKANANEIYHLESIVDLVKKERETHNIFPKDIDILTG 99

Query: 73  GFPCQPFSQAG 83
           GFPCQ FS AG
Sbjct: 100 GFPCQDFSVAG 110


>gi|53729085|ref|ZP_00134186.2| COG0270: Site-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307257255|ref|ZP_07539025.1| Modification methylase [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
 gi|306864105|gb|EFM96018.1| Modification methylase [Actinobacillus pleuropneumoniae serovar
          10 str. D13039]
          Length = 354

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          LK  D FCG GG+   L++      +      +      +TY+ N    + I  ++ ++ 
Sbjct: 9  LKAVDFFCGGGGMSYGLQKA----GIRILAGIDYEINCKETYETNIKGASFIHANVFELT 64

Query: 61 TQ------DIPDHD---VLLAGFPCQPFSQ 81
           +      DI   D   +L+   PCQ +S 
Sbjct: 65 EKELEKTLDISRKDDNLILVGCSPCQYWSV 94


>gi|313884351|ref|ZP_07818113.1| putative modification methylase BanI [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312620429|gb|EFR31856.1| putative modification methylase BanI [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 335

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 32 SSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
            E +  + +T + N P+  +I  DIA +         DV+  G PCQ FS AG
Sbjct: 29 FVEFDQRACETLRENRPDWNVIEDDIANVDFSQYKNKIDVVSGGAPCQAFSYAG 82


>gi|242316067|ref|ZP_04815083.1| modification methylase HgiDII [Burkholderia pseudomallei 1106b]
 gi|242139306|gb|EES25708.1| modification methylase HgiDII [Burkholderia pseudomallei 1106b]
          Length = 349

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG    L   F   ++      +++P     Y+AN     +  D++ + T+++
Sbjct: 12 VDLFCGAGG----LTHGFVLEDLPVVAGIDLDPACRYPYEANNRAKFVERDVSTVTTEEL 67

Query: 65 P------DHDVLLAGFPCQPFS 80
                 +  +L    PCQPFS
Sbjct: 68 ETLFGDAELTILAGCAPCQPFS 89


>gi|126453573|ref|YP_001067912.1| modification methylase HgiDII [Burkholderia pseudomallei 1106a]
 gi|126227215|gb|ABN90755.1| modification methylase HgiDII [Burkholderia pseudomallei 1106a]
          Length = 344

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG    L   F   ++      +++P     Y+AN     +  D++ + T+++
Sbjct: 7  VDLFCGAGG----LTHGFVLEDLPVVAGIDLDPACRYPYEANNRAKFVERDVSTVTTEEL 62

Query: 65 P------DHDVLLAGFPCQPFS 80
                 +  +L    PCQPFS
Sbjct: 63 ETLFGDAELTILAGCAPCQPFS 84


>gi|302656192|ref|XP_003019852.1| hypothetical protein TRV_06140 [Trichophyton verrucosum HKI 0517]
 gi|291183624|gb|EFE39228.1| hypothetical protein TRV_06140 [Trichophyton verrucosum HKI 0517]
          Length = 1085

 Score = 60.9 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L   +LF G G     LE+      +E  ++ E   + + TY+AN P+     L  G + 
Sbjct: 632 LNALNLFSGGGTFDRGLEEGGA---IESKWAVEWGLHQMLTYRANHPDGNGLKLFCGSVN 688

Query: 58  K-----IKTQD------IPDHDVLLAGFPCQPFSQA 82
                 I  ++      I D   + AG PCQ +S A
Sbjct: 689 DYLFQAITGKENIYVARIGDAHFISAGSPCQGYSSA 724


>gi|326775654|ref|ZP_08234919.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655987|gb|EGE40833.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 324

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            L  G+G +   +E           ++ E +P++ +      P     G I +I   D+
Sbjct: 10 ISLCSGVGALDKAVENLTGAATA--VYA-EKDPWAAQVMAGLLPGVENLGSIDEINYADV 66

Query: 65 ----PDHDVLLAGFPCQPFSQAG 83
              PD D L+AG+PCQ  S  G
Sbjct: 67 AATYPDLDTLIAGWPCQGISNNG 89


>gi|126208670|ref|YP_001053895.1| modification methylase [Actinobacillus pleuropneumoniae L20]
 gi|126097462|gb|ABN74290.1| modification methylase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 364

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           LK  D FCG GG+   L++      +      +      +TY+ N    + I  ++ ++ 
Sbjct: 19  LKAVDFFCGGGGMSYGLQKA----GIRILAGIDYEINCKETYETNIKGASFIHANVFELT 74

Query: 61  TQ------DIPDHD---VLLAGFPCQPFSQ 81
            +      DI   D   +L+   PCQ +S 
Sbjct: 75  EKELEKTLDISRKDDNLILVGCSPCQYWSV 104


>gi|261225387|ref|ZP_05939668.1| C-5 cytosine-specific DNA methylase [Escherichia coli O157:H7
          str. FRIK2000]
 gi|261255360|ref|ZP_05947893.1| C-5 cytosine-specific DNA methylase [Escherichia coli O157:H7
          str. FRIK966]
 gi|323182002|gb|EFZ67413.1| modification methylase XorII [Escherichia coli 1357]
          Length = 401

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI------- 64
          G+ L LE+       E     E +  ++KT + N PN  +F G I      ++       
Sbjct: 2  GLDLGLEEA----GFELVACVEQDKAALKTIKTNKPNLAVFEGSIVDCTGSELLALAGVN 57

Query: 65 --PDHDVLLAGFPCQPFSQAG 83
             + D++  G PCQ FS  G
Sbjct: 58 DKEEIDLVAGGPPCQAFSVFG 78


>gi|327308782|ref|XP_003239082.1| hypothetical protein TERG_01066 [Trichophyton rubrum CBS 118892]
 gi|326459338|gb|EGD84791.1| hypothetical protein TERG_01066 [Trichophyton rubrum CBS 118892]
          Length = 1079

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  +LF G G     LE+      VE  ++ E     + TY+AN P+     L  G + 
Sbjct: 626 LKALNLFSGGGTFDRGLEEGGA---VESKWAVEWGVQQMLTYRANHPDGKGLKLFCGSVN 682

Query: 58  K-----------IKTQDIPDHDVLLAGFPCQPFSQA 82
                       I    I D   + AG PCQ +S A
Sbjct: 683 DYLLQAITGKENIYVAKIGDAHFISAGSPCQGYSSA 718


>gi|299065518|emb|CBJ36687.1| Cytosine-specific methyltransferase [Ralstonia solanacearum
          CMR15]
          Length = 441

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 18/86 (20%)

Query: 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAKIKTQDI- 64
          G+ L L+ T     + C    E  P   +T +AN           +  GDI+ +   ++ 
Sbjct: 2  GLDLGLDGTGRFELLACV---EKVPSFCETIRANRGAGRLPAGLKVFEGDISDLDPAEVL 58

Query: 65 -------PDHDVLLAGFPCQPFSQAG 83
                  + DVL+ G PCQ FS AG
Sbjct: 59 AACGLKPGELDVLVGGPPCQSFSTAG 84


>gi|254419546|ref|ZP_05033270.1| C-5 cytosine-specific DNA methylase superfamily [Brevundimonas
          sp. BAL3]
 gi|196185723|gb|EDX80699.1| C-5 cytosine-specific DNA methylase superfamily [Brevundimonas
          sp. BAL3]
          Length = 388

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 24 HRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQ 81
             V+  F+++++P   + + AN P+     GD+  ++  D+P   D+  A  PCQ  S 
Sbjct: 31 WAGVDTVFANDMDPAKGRAFVANHPDIRFHLGDVWSLRPADLPGAPDLAWASSPCQDVSL 90

Query: 82 AG 83
          AG
Sbjct: 91 AG 92


>gi|255553977|ref|XP_002518029.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223543011|gb|EEF44547.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 1542

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + ++ N P +L+F           
Sbjct: 1109 LDIFSGCGGLSEGLQQAGVSS---TKWAIEYEEPAGEAFKLNHPESLVFINNCNVILRAV 1165

Query: 54   ----GD----IAK---------IKTQDIPD------HDVLLAGFPCQPFS 80
                GD    I+          +  + I D       D +  G PCQ FS
Sbjct: 1166 MEKCGDTDDCISTSEAIELAASLDEKIINDLPLPGQVDFINGGPPCQGFS 1215


>gi|167759130|ref|ZP_02431257.1| hypothetical protein CLOSCI_01477 [Clostridium scindens ATCC
          35704]
 gi|167663248|gb|EDS07378.1| hypothetical protein CLOSCI_01477 [Clostridium scindens ATCC
          35704]
          Length = 324

 Score = 60.9 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I +LF GIG  R  L     +   +     EIN  +V++Y + F   L +     +  
Sbjct: 5  IQILELFGGIGSPRCALRNL--NIQTKAIDYVEINEKAVRSYNSMFREELEYKTQTVVGW 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P  D+L+ G PCQ  S AG
Sbjct: 63 NLKP--DILIHGSPCQDMSIAG 82


>gi|326559835|gb|EGE10235.1| DNA-cytosine methyltransferase [Moraxella catarrhalis 7169]
 gi|326569677|gb|EGE19729.1| DNA-cytosine methyltransferase [Moraxella catarrhalis BC1]
 gi|326575962|gb|EGE25885.1| DNA-cytosine methyltransferase [Moraxella catarrhalis CO72]
          Length = 339

 Score = 60.5 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 1  MLKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M KI   DLFCG+GG+   L +      ++     +I+      Y+ N   T +   +A 
Sbjct: 1  MTKIEAVDLFCGVGGLTAGLIRA----GIKVKAGYDIDAACRYGYEYNNDATFVQKSVAD 56

Query: 59 IKTQDIPD--HD----VLLAGFPCQPFS 80
          +   +I     D    +L    PCQPFS
Sbjct: 57 VTADEIESWYSDGVVRLLAGCAPCQPFS 84


>gi|198420928|ref|XP_002123461.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha [Ciona
           intestinalis]
          Length = 662

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 2   LKITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKI 59
           +++  LF GI  G  + L+Q      V+ +F+SEI+  ++   +   P  +   GD+ +I
Sbjct: 375 IRVLSLFDGIATGF-VSLKQLG--IEVKVYFASEIDHEAICVSEIRHPRVVKHVGDVCEI 431

Query: 60  KTQ---DIPDHDVLLAGFPCQPFSQ 81
             +   D    D+++ G PC   S 
Sbjct: 432 TDKMLSDWGPFDLVIGGSPCNDLSI 456


>gi|256374317|ref|YP_003097977.1| DNA (cytosine-5-)-methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255918620|gb|ACU34131.1| DNA (cytosine-5-)-methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 404

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 21/98 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE--INPY--------SVKTYQANFPNTL 51
            K+ DLF G GG+ L       HR+     +++  I               Y+ N     
Sbjct: 6   YKVVDLFSGAGGMSLGFR---THRDFTVVGAADAQIGKPSSPLGSLRCNNVYRDNIGIDP 62

Query: 52  IFGDIAKIKTQDIPDH--------DVLLAGFPCQPFSQ 81
           +  D+ +I    + +         DVL+A  PC  F++
Sbjct: 63  LQVDLGRIDPAVLREVWGLRRGELDVLVACPPCSGFTR 100


>gi|227431295|ref|ZP_03913348.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
 gi|227352888|gb|EEJ43061.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
          Length = 353

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 1  MLKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIA 57
          ++K   LF   GIG      E   +++ V+   ++E+ P    TY+  +P T +F GDI 
Sbjct: 4  IMKAMSLFSSAGIG------ELNIHNKGVDIVAANELLPKRADTYRFFYPETKMFQGDIT 57

Query: 58 K--IKTQDIP-----DHDVLLAGFPCQPFSQAG 83
             +KT+ I          LLA  PCQ  S  G
Sbjct: 58 DENLKTEMIEFARQQKVRFLLATPPCQGLSSIG 90


>gi|282883032|ref|ZP_06291633.1| type II restriction-modification system methylation subunit
          [Peptoniphilus lacrimalis 315-B]
 gi|281297089|gb|EFA89584.1| type II restriction-modification system methylation subunit
          [Peptoniphilus lacrimalis 315-B]
          Length = 312

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          KI +LF GIG IR            E     EI+   VK+Y A +        +   K  
Sbjct: 5  KILELFGGIGAIRKAFINL--KIPYEVVDYVEIDKACVKSYNALYGENYKPKSVVGYKAP 62

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          +    D+++ G  CQ FS+ G
Sbjct: 63 N-EKIDLIMHGSSCQDFSRIG 82


>gi|323691274|ref|ZP_08105549.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14673]
 gi|323504614|gb|EGB20401.1| cytosine-specific methyltransferase [Clostridium symbiosum
          WAL-14673]
          Length = 324

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          ++I +LF GIG  R  L     +   +     EIN  +V++Y + F   L +     +  
Sbjct: 5  IQILELFGGIGSPRCALRNL--NIPTKAIDYVEINEKAVRSYNSMFREELEYKTQTVVGW 62

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
             P  D+L+ G PCQ  S AG
Sbjct: 63 NLKP--DILIHGSPCQDMSIAG 82


>gi|237710586|ref|ZP_04541067.1| DNA-cytosine methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455308|gb|EEO61029.1| DNA-cytosine methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 366

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFGDIAKIK- 60
           K+   F   GG        +     +    +EI+P  +K Y+ N  P      DI  +  
Sbjct: 34  KVFSCFA-CGG---GSTMGYKIAGYDVIGCNEIDPRMMKCYETNHHPQYSYLEDIRDLVR 89

Query: 61  ----TQDIPDHDVLLAGFPCQPFSQAG 83
                +++ + D+L    PC  FS +G
Sbjct: 90  RNNLPEELYNLDILDGSPPCSTFSMSG 116


>gi|318057150|ref|ZP_07975873.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          SA3_actG]
 gi|318076182|ref|ZP_07983514.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          SA3_actF]
          Length = 324

 Score = 60.5 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DL  G+GG  L LEQ           + +++  S  T +AN P   +I GD+ +I+  +
Sbjct: 7  IDLCAGVGGQALGLEQA----GFRIAAAVDVDVDSCATLRANRPEWQVIRGDLKEIEPVE 62

Query: 64 ---IPDHDVLLAGFPCQPFSQAG 83
             +   D+L  G P  P++  G
Sbjct: 63 YDCLDGADLLSCGLPRSPYTIGG 85


>gi|333024772|ref|ZP_08452836.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          Tu6071]
 gi|332744624|gb|EGJ75065.1| putative 5-methylcytosine methyltransferase [Streptomyces sp.
          Tu6071]
          Length = 324

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DL  G+GG  L LEQ           + +++  S  T +AN P   +I GD+ +I+  +
Sbjct: 7  IDLCAGVGGQALGLEQA----GFRIAAAVDVDVDSCATLRANRPEWQVIRGDLKEIEPVE 62

Query: 64 ---IPDHDVLLAGFPCQPFSQAG 83
             +   D+L  G P  P++  G
Sbjct: 63 YDCLDGADLLSCGLPRSPYTIGG 85


>gi|302876801|ref|YP_003845434.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|307687484|ref|ZP_07629930.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
 gi|302579658|gb|ADL53670.1| DNA-cytosine methyltransferase [Clostridium cellulovorans 743B]
          Length = 406

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 32/111 (28%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFP-----NTLI 52
            KI DLF G GG+     Q+      E   + E     V T     +  +        ++
Sbjct: 4   YKIIDLFAGCGGLEDGFLQSGQ---YEDVAAVEWLKPQVNTLVNRLKTKWGIVDADERVM 60

Query: 53  FGDIAK-------IKTQDI-------------PDHDVLLAGFPCQPFSQAG 83
             DI +        + ++                 D+++ G PCQ +S AG
Sbjct: 61  HFDIQREEELFGGWEDEEFGTNRGLDYFVNKANGIDIIIGGPPCQAYSVAG 111


>gi|254804563|ref|YP_003082784.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
 gi|254668105|emb|CBA04653.1| putative type II DNA modification methylase [Neisseria
          meningitidis alpha14]
          Length = 450

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
           +  +  GI          + +   E  + SEI  +     +  +P+    GD+  I   
Sbjct: 6  TVGSVCSGI----EAASIAWQNLGFEFKWFSEILKFPSDILRNKYPHIDNLGDMNYIPEL 61

Query: 62 ---QDIPDHDVLLAGFPCQPFSQAG 83
               I   D++  G PCQ FS AG
Sbjct: 62 LKHNSISSPDLICGGTPCQAFSLAG 86


>gi|302520934|ref|ZP_07273276.1| phage DNA methylase [Streptomyces sp. SPB78]
 gi|302429829|gb|EFL01645.1| phage DNA methylase [Streptomyces sp. SPB78]
          Length = 190

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ- 62
            L  G       L+Q   H   +     +E +P + +   A  P+    GDI  +  Q 
Sbjct: 14 ISLCTG----SAALDQAVEHVTGLTTVAVAEKDPAASRLLAARVPHARNLGDITAVDWQH 69

Query: 63 ---DIPDHDVLLAGFPCQPFSQAG 83
             ++P    L AGFPCQ  S AG
Sbjct: 70 VAAELPRPAALTAGFPCQDISNAG 93


>gi|237720893|ref|ZP_04551374.1| DNA-cytosine methyltransferase [Bacteroides sp. 2_2_4]
 gi|229449728|gb|EEO55519.1| DNA-cytosine methyltransferase [Bacteroides sp. 2_2_4]
          Length = 370

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFGDIAKIK- 60
           K+   F   GG        +     +    +EI+P  +K Y+ N  P      DI  +  
Sbjct: 36  KVFSCFA-CGG---GSTMGYKIAGYDVIGCNEIDPRMMKCYETNHHPQYSYLEDIRDLVK 91

Query: 61  ----TQDIPDHDVLLAGFPCQPFSQAG 83
                +++ + D+L    PC  FS +G
Sbjct: 92  RNYLPEELYNLDILDGSPPCSTFSMSG 118


>gi|225465257|ref|XP_002268238.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1208

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            D+F G GG+   L+Q          ++ E    + + +  N P+ L+F           
Sbjct: 776 LDVFAGCGGLSEGLQQAGVSL---TKWAIEYEEPAGEAFHLNHPDALMFINDCNVILRAI 832

Query: 54  ----GD-------------IAKIKTQDIPD------HDVLLAGFPCQPFS 80
               GD               K+  +DI +       D +  G PCQ FS
Sbjct: 833 MSACGDADDCVSTSEATELAEKLDEKDIRNLPRPGQVDFINGGPPCQGFS 882


>gi|219871980|ref|YP_002476355.1| moodification methylase HgaIA [Haemophilus parasuis SH0165]
 gi|219692184|gb|ACL33407.1| moodification methylase HgaIA (M.HgaIA) (Cytosine-specific
          methyltransferase HgaIA) (M.HgaI-1) [Haemophilus
          parasuis SH0165]
          Length = 357

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 2  LKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK 58
          ++   LF   GIG      E   +   ++   ++E+       YQ  +PN  ++ GDI  
Sbjct: 5  IRGLSLFSSAGIG------EYFLSRVGIDIIVANELIKKRADLYQKIYPNHKMVIGDIRD 58

Query: 59 -------IKTQDIPDHDVLLAGFPCQPFSQAG 83
                 +        D L+A  PCQ  S AG
Sbjct: 59 QRIFNKVLNIALTNQVDFLIASPPCQGMSVAG 90


>gi|167539782|ref|XP_001741349.1| DNA (cytosine-5)-methyltransferase [Entamoeba dispar SAW760]
 gi|165894050|gb|EDR22134.1| DNA (cytosine-5)-methyltransferase, putative [Entamoeba dispar
          SAW760]
          Length = 322

 Score = 60.5 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + F GIGG+R   E +  + +       +IN  + K Y  NF   +   ++  I  +
Sbjct: 7  RVIEFFSGIGGLRSSYEHSSINISATFIPF-DINEIANKIYSKNFKEEVQVKNLDSISIK 65

Query: 63 DIP--DHDVLLAGFPCQPF 79
           I   + +      PCQP+
Sbjct: 66 QIESLNCNTWFMSPPCQPY 84


>gi|269797252|ref|YP_003311152.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
 gi|269093881|gb|ACZ23872.1| DNA-cytosine methyltransferase [Veillonella parvula DSM 2008]
          Length = 423

 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 48/128 (37%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--------YQANFPN--- 49
           ML I D+F G GG+        ++   +     E++  +  +        Y  N  N   
Sbjct: 1   MLNIIDVFSGAGGLTEGFR---DNTKFKFICHIEMDKDACASLCLRNIYYYFKNINNLSP 57

Query: 50  --TLIFGDIA-------------------KIKTQDI-------------PDHDVLLAGFP 75
               I G+I+                   +I  + I              + D ++ G P
Sbjct: 58  YFEYIQGNISREVLYSMVPSEVTKDVLSKEISEESILPIFEFIDKRLGTKELDGIIGGPP 117

Query: 76  CQPFSQAG 83
           CQ +S  G
Sbjct: 118 CQAYSIIG 125


>gi|297619945|ref|YP_003708050.1| DNA-cytosine methyltransferase [Methanococcus voltae A3]
 gi|297378922|gb|ADI37077.1| DNA-cytosine methyltransferase [Methanococcus voltae A3]
          Length = 428

 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 35/147 (23%), Gaps = 70/147 (47%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT----------- 50
               DLFCG GG                  + EI    V +Y  NF              
Sbjct: 27  FTFVDLFCGCGGFSRGF----IDEGFNPLVAIEIEENPVSSYALNFNGKIYEKIYKNGQY 82

Query: 51  -----------------------------------LIFGDIAKIKTQDIPDH-------- 67
                                              ++  DI +I + DI           
Sbjct: 83  NYILKENYFKLEDFMSKEEIDFFKKINNYDKLSPIILNEDIREIHSLDILKFIDDKNDNN 142

Query: 68  ------------DVLLAGFPCQPFSQA 82
                       D+L+ G PC+ ++ A
Sbjct: 143 LGNIRSLSSNNIDLLIGGPPCEGYTGA 169


>gi|302760531|ref|XP_002963688.1| hypothetical protein SELMODRAFT_80009 [Selaginella moellendorffii]
 gi|300168956|gb|EFJ35559.1| hypothetical protein SELMODRAFT_80009 [Selaginella moellendorffii]
          Length = 1471

 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 37/113 (32%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
            L + D+F G GG+   + Q+         ++ E +  + + ++ N P   +F D      
Sbjct: 1035 LSMLDIFAGCGGLSEGIHQSGIAS---TKWAIEYDHAAAEAFKMNHPTATVFFDNCNVVL 1091

Query: 56   --IAKI-----------------------KTQDIP---DHDVLLAGFPCQPFS 80
              I +I                       +   +P   + D +  G PCQ FS
Sbjct: 1092 RSIMEIGGDLDDCCSTPEAAEMASKLSENQKSSLPRPGEVDFISGGPPCQGFS 1144


>gi|152973178|ref|YP_001338324.1| putative site-specific DNA methylas [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|150958027|gb|ABR80057.1| putative site-specific DNA methylas [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
          Length = 350

 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 1  MLKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M K+   DLFCG GG+   L        V      +I+P     Y+ N     I   ++ 
Sbjct: 1  MKKVSCVDLFCGAGGLTHGL----VLEGVPVVAGIDIDPACKFPYETNNKAKFIEKSVSD 56

Query: 59 IKTQDIP----DHDV--LLAGFPCQPFS 80
            + D+     D DV  L    PCQPFS
Sbjct: 57 FTSSDLNELYADSDVRILAGCAPCQPFS 84


>gi|238892833|ref|YP_002917567.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238545149|dbj|BAH61500.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
          Length = 350

 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 1  MLKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          M K+   DLFCG GG+   L        V      +I+P     Y+ N     I   ++ 
Sbjct: 1  MKKVSCVDLFCGAGGLTHGL----VLEGVPVVAGIDIDPACKFPYETNNKAKFIEKSVSD 56

Query: 59 IKTQDIP----DHDV--LLAGFPCQPFS 80
            + D+     D DV  L    PCQPFS
Sbjct: 57 FTSSDLNELYADSDVRILAGCAPCQPFS 84


>gi|156050777|ref|XP_001591350.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980]
 gi|154692376|gb|EDN92114.1| hypothetical protein SS1G_07976 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1392

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIK 60
            DLFCG G     LE+     N    ++ ++   +V+TY  N  +     + FG +  + 
Sbjct: 656 LDLFCGGGNFGRGLEEGGAVHN---KWAVDLFSAAVQTYSTNLKDPEGTDMFFGSVNDLL 712

Query: 61  TQD---------IP---DHDVLLAGFPCQPFSQ 81
            Q          IP   D DV+LAG PCQ FS+
Sbjct: 713 VQAFEGNPQKFRIPSPGDVDVILAGSPCQGFSR 745


>gi|302497567|ref|XP_003010784.1| hypothetical protein ARB_03486 [Arthroderma benhamiae CBS 112371]
 gi|291174327|gb|EFE30144.1| hypothetical protein ARB_03486 [Arthroderma benhamiae CBS 112371]
          Length = 1085

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L   +LF G G     LE+      +E  ++ E   + + TY+AN PN     L  G + 
Sbjct: 632 LNALNLFSGGGTFDRGLEEGGA---IESKWAVEWGLHQMLTYRANHPNGKGLKLFCGSVN 688

Query: 58  K-----IKTQD------IPDHDVLLAGFPCQPFSQA 82
                 I  ++      I +   + AG PCQ +S A
Sbjct: 689 DYLFQAITGKENIYVARIGEAHFISAGSPCQGYSSA 724


>gi|167621147|ref|ZP_02389778.1| site-specific DNA-methyltransferase [Burkholderia thailandensis
          Bt4]
          Length = 355

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG+GG+   L +      ++     +I+      ++AN     +  D+ K+K ++I
Sbjct: 17 VDLFCGVGGLTHGLVRG----GIQVSAGIDIDTSCKFPFEANNSAVFLERDVGKLKAEEI 72

Query: 65 ------PDHDVLLAGFPCQPFS 80
                 D  +L    PCQPFS
Sbjct: 73 APFYEGADITLLAGCAPCQPFS 94


>gi|167560986|ref|ZP_02353902.1| site-specific DNA-methyltransferase [Burkholderia oklahomensis
          EO147]
          Length = 355

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG+GG+   L +      ++     +I+      ++AN     +  D+ K+K ++I
Sbjct: 17 VDLFCGVGGLTHGLVRG----GIQVSAGIDIDTSCKFPFEANNSAVFLERDVGKLKAEEI 72

Query: 65 ------PDHDVLLAGFPCQPFS 80
                 D  +L    PCQPFS
Sbjct: 73 APFYEGADITLLAGCAPCQPFS 94


>gi|170084905|ref|XP_001873676.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651228|gb|EDR15468.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 330

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--IK 60
          +  + +CGIGG+   L ++          + + +  + + Y+AN  N +   DI+     
Sbjct: 4  RALEFYCGIGGLHFALSRS--SLGGTVVRAFDWDQCACRVYKANHSNIVTNVDISTLVAA 61

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
                 D+ L    CQP++ 
Sbjct: 62 DLAALKADLWLLSPACQPYTI 82


>gi|332016329|gb|EGI57242.1| DNA (cytosine-5)-methyltransferase 3B [Acromyrmex echinatior]
          Length = 778

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 3   KITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD---IA 57
           ++  LF G+  G  L L++      V+ +++SEI+  ++    A+F + + + GD   I 
Sbjct: 485 RVLSLFDGLSTGF-LVLQKLG--LVVDVYYASEIDVNALTISSAHFGDRITYLGDVRSIT 541

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQ 81
           K K Q+I   D+L+ G PC   S 
Sbjct: 542 KEKIQEIAPIDLLIGGSPCNDLSL 565


>gi|302786012|ref|XP_002974777.1| hypothetical protein SELMODRAFT_232368 [Selaginella moellendorffii]
 gi|300157672|gb|EFJ24297.1| hypothetical protein SELMODRAFT_232368 [Selaginella moellendorffii]
          Length = 1335

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 37/113 (32%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
            L + D+F G GG+   + Q+         ++ E +  + + ++ N P   +F D      
Sbjct: 899  LSMLDIFAGCGGLSEGIHQSGIAS---TKWAIEYDHAAAEAFKMNHPTATVFFDNCNVVL 955

Query: 56   --IAKI-----------------------KTQDIP---DHDVLLAGFPCQPFS 80
              I +I                       +   +P   + D +  G PCQ FS
Sbjct: 956  RSIMEIGGDLDDCCSTPEAAEMASKLSENQKSSLPRPGEVDFISGGPPCQGFS 1008


>gi|116514211|ref|YP_813117.1| site-specific DNA methylase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116093526|gb|ABJ58679.1| Site-specific DNA methylase [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
          Length = 380

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIKTQD---IPDHDVL 70
          +Q          +++E +P +V+TY+ N  N     T+   D+      D   + + D L
Sbjct: 26 DQNGEKWGFAHAWANEYDPDTVETYKLNILNDPDAKTVYCEDVRNFNLDDDEKLGNIDAL 85

Query: 71 LAGFPCQPFSQAG 83
          + GFPC  +S  G
Sbjct: 86 IFGFPCNDYSVVG 98


>gi|328774327|gb|EGF84364.1| hypothetical protein BATDEDRAFT_29368 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 349

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +K+ + + GIGG    L +T  H   +   + ++N  +   YQ   P   +   +I  + 
Sbjct: 8  IKVLEFYSGIGGFHAALSKT--HIAFQVLQAFDMNINANLVYQTTHPTVPVSVRNIGFLS 65

Query: 61 TQDIP--DHDVLLAGFPCQPFSQAG 83
            D+     D+ L   PCQP+S+ G
Sbjct: 66 PIDLDAFQADMFLLSPPCQPYSRKG 90


>gi|146301288|ref|YP_001195879.1| hypothetical protein Fjoh_3546 [Flavobacterium johnsoniae UW101]
 gi|146155706|gb|ABQ06560.1| hypothetical protein Fjoh_3546 [Flavobacterium johnsoniae UW101]
          Length = 216

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
          +K+ +L+ GIGG R        +       + E++P     Y  +FP +T++ GD  +  
Sbjct: 1  MKVLNLYAGIGGNR-------KNWTDVTVTAVELDPQLAAVYAEHFPQDTVVVGDAHQYL 53

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
               + D + +  PCQ  S
Sbjct: 54 IDHHNEFDFIWSSPPCQSHS 73


>gi|297563163|ref|YP_003682137.1| DNA-cytosine methyltransferase [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296847611|gb|ADH69631.1| DNA-cytosine methyltransferase [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
          Length = 387

 Score = 60.2 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGDIAKI 59
          + + F GIG  R+ LE       +   +S++        Y+ +F     +T +  DI K+
Sbjct: 14 VLEFFAGIGLARIGLEAA----GLRVSWSNDYETSKKNMYEGHFGTSSDHTYVLRDIRKV 69

Query: 60 KTQDIP-DHDVLLAGFPCQPFS 80
              +P    V  A  PC   S
Sbjct: 70 YADQLPAGASVAWASSPCTDLS 91


>gi|189199258|ref|XP_001935966.1| C-5 cytosine methyltransferase DmtA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983065|gb|EDU48553.1| C-5 cytosine methyltransferase DmtA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 744

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 17/88 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
             D+FCG GG      Q          +  + +  +++TY+ N P    F    ++   D
Sbjct: 315 FGDVFCGAGGASQGALQA----GYSICWGLDFDHTALETYRLNHPTAHTF----ELDAHD 366

Query: 64  IP---------DHDVLLAGFPCQPFSQA 82
            P           DVL    PC  +S A
Sbjct: 367 FPPKNVCPKCWKVDVLHLSPPCCYWSPA 394


>gi|325126553|gb|ADY85883.1| DNA-cytosine methyltransferase family protein [Lactobacillus
          delbrueckii subsp. bulgaricus 2038]
          Length = 380

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDIAKIKTQD---IPDHDVL 70
          ++          +++E +P +V+TY+ N  N     T+   D+ K    D   + + D L
Sbjct: 26 DKNGVEWGFTHAWANEYDPDTVETYKLNILNDPDAKTVYCEDVRKFNLDDDEKLGNIDAL 85

Query: 71 LAGFPCQPFSQAG 83
          + GFPC  +S  G
Sbjct: 86 IFGFPCNDYSVVG 98


>gi|167763801|ref|ZP_02435928.1| hypothetical protein BACSTE_02181 [Bacteroides stercoris ATCC
           43183]
 gi|167697917|gb|EDS14496.1| hypothetical protein BACSTE_02181 [Bacteroides stercoris ATCC
           43183]
          Length = 357

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK- 60
           K+   F   GG        +     +    +EI+P  +K Y  N  P      DI  +  
Sbjct: 23  KVFSCFA-CGG---GSTMGYKLAGFDVIGCNEIDPKMMKCYIENHNPQYTFLEDIRDLVR 78

Query: 61  ----TQDIPDHDVLLAGFPCQPFSQAG 83
                +++ + D+L    PC  FS +G
Sbjct: 79  RNNLPEELYNLDILDGSPPCSTFSMSG 105


>gi|2654108|gb|AAC49931.1| cytosine-5 DNA methyltransferase [Pisum sativum]
          Length = 1554

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G G +   L ++         ++ E    +   ++AN P  L+F           
Sbjct: 1120 LDIFAGCGALSEGLHKSGASS---TKWAIEYEEPAGNAFKANHPEALVFINNCNVILRAI 1176

Query: 54   ----GDI-------------AKIKTQDIPD------HDVLLAGFPCQPFS 80
                GDI             +K+  +D+         D +  G PCQ FS
Sbjct: 1177 MEKCGDIDECISTAEAAELASKLDDKDLNSLPLPGQVDFINGGPPCQGFS 1226


>gi|462652|sp|P25282|MTG1_HAEGA RecName: Full=Modification methylase HgaIA; Short=M.HgaIA;
          AltName: Full=Cytosine-specific methyltransferase
          HgaIA; AltName: Full=M.HgaI-1
          Length = 357

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 5  TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK--- 58
            LF   GIG      E   +   ++   ++E+       YQ  +PN  ++ GDI     
Sbjct: 8  LSLFSSAGIG------EYFLSRVGIDIIVANELIKKRADLYQKIYPNHKMVIGDIRDQRI 61

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +        D L+A  PCQ  S AG
Sbjct: 62 FNKVLNIALTNQVDFLIASPPCQGMSVAG 90


>gi|2895089|gb|AAC39356.1| Met2-type cytosine DNA-methyltransferase [Daucus carota]
          Length = 1761

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q+         ++ E    +   ++ N P+T +F           
Sbjct: 1326 LDIFAGCGGLSEGLQQSGV---CRTKWAIEYEEPAGDAFKLNHPDTTMFINNCNVILKAI 1382

Query: 54   ----GD----IA---------KIKTQDIPD------HDVLLAGFPCQPFS 80
                GD    I+         K+  +++ +       D +  G PCQ FS
Sbjct: 1383 MDKSGDADDCISTPEAADLAAKLSEEELKNLPLPGQVDFINGGPPCQGFS 1432


>gi|329767774|ref|ZP_08259290.1| hypothetical protein HMPREF0428_00987 [Gemella haemolysans M341]
 gi|328838875|gb|EGF88469.1| hypothetical protein HMPREF0428_00987 [Gemella haemolysans M341]
          Length = 336

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 11 IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIK-----TQDI 64
           GG        F     E     EI+P   + YQ N  P  L   DI          +++
Sbjct: 23 CGG---GSTMGFKLAGFEHLGGVEIDPKVAEVYQLNHNPKYLYNEDIRAFLARDEYPEEL 79

Query: 65 PDHDVLLAGFPCQPFSQAG 83
           + DVL    PC  FS AG
Sbjct: 80 YNLDVLEGSPPCSSFSLAG 98


>gi|320588321|gb|EFX00790.1| DNA methyltransferase dim-2 [Grosmannia clavigera kw1407]
          Length = 1168

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  DLFCG G +   LE       VE  ++++I   ++ T  AN           G   
Sbjct: 653 LRALDLFCGCGSLGRGLEDAGV---VETRWANDIWDRAIHTLMANRATADAVEPFLGSAD 709

Query: 58  KIKTQDI-----------PDHDVLLAGFPCQPFSQ 81
           ++  + +            + D++  G PCQ FS 
Sbjct: 710 ELLARALQGRYSRAVPAPGEVDLISGGSPCQGFSV 744


>gi|42560766|ref|NP_975217.1| cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma
          mycoides subsp. mycoides SC str. PG1]
 gi|42492262|emb|CAE76859.1| Cytosine-specific DNA-methyltransferase Sau96I [Mycoplasma
          mycoides subsp. mycoides SC str. PG1]
 gi|301320716|gb|ADK69359.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 341

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 13/74 (17%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI--------PDHDV 69
          EQ             E +  +V+T + N PN  ++F D+ K+  +D+         + D+
Sbjct: 22 EQAGFEH----VGLVEFDKQAVETLKFNSPNWNIVFEDVQKVSQRDLKKEFNLKERELDL 77

Query: 70 LLAGFPCQPFSQAG 83
          L  G PCQ FS AG
Sbjct: 78 LSGGAPCQSFSYAG 91


>gi|85710855|ref|ZP_01041916.1| DNA modification methylase M.NGOI [Idiomarina baltica OS145]
 gi|85695259|gb|EAQ33196.1| DNA modification methylase M.NGOI [Idiomarina baltica OS145]
          Length = 345

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 14/89 (15%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIAK 58
           ++  G GG  L L               EI   + KT + N          +I GD+ +
Sbjct: 14 LEMCAGAGGQALGLHMA----GFRHSALIEIESAACKTLRLNNQEHNLGWQEIIEGDLIE 69

Query: 59 I---KTQDIPD-HDVLLAGFPCQPFSQAG 83
                +   D  D++  G PC PFS+AG
Sbjct: 70 FSQSNAKSYKDQIDLVAGGVPCPPFSKAG 98


>gi|262200381|ref|YP_003271589.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
          43247]
 gi|262083728|gb|ACY19696.1| C-5 cytosine-specific DNA methylase [Gordonia bronchialis DSM
          43247]
          Length = 372

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           + DLF G GG+ +      +   +      E++  ++ T +           + +    
Sbjct: 19 TVIDLFAGPGGLDV----AAHWLGLPVVG-VELDADAIAT-RHAAGLKSHHRSVQRCTPA 72

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          D     +L AG PCQ F+ AG
Sbjct: 73 DF-RATILTAGPPCQTFTVAG 92


>gi|20531191|gb|AAM27409.1|AF500228_1 RIP defective [Neurospora intermedia]
          Length = 839

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDI---AK 58
               D F G GG    +     H    C    +   ++V +  ANF +T I  DI     
Sbjct: 288 YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQDTTIH-DIDMHEF 342

Query: 59  IKTQDIPD-HDVLLAGFPCQPFSQA 82
           I  ++I    D+L    PCQ +S A
Sbjct: 343 IVDKEIRHRVDILHLSPPCQVWSPA 367


>gi|216711|dbj|BAA14377.1| HgaI methylase [Avibacterium paragallinarum]
 gi|435623|dbj|BAA04206.1| HgaI methylase 1 [Avibacterium paragallinarum]
 gi|1090538|prf||2019268A HgaI restriction methylase:ISOTYPE=1
          Length = 365

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 5  TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK--- 58
            LF   GIG      E   +   ++   ++E+       YQ  +PN  ++ GDI     
Sbjct: 16 LSLFSSAGIG------EYFLSRVGIDIIVANELIKKRADLYQKIYPNHKMVIGDIRDQRI 69

Query: 59 ----IKTQDIPDHDVLLAGFPCQPFSQAG 83
              +        D L+A  PCQ  S AG
Sbjct: 70 FNKVLNIALTNQVDFLIASPPCQGMSVAG 98


>gi|46138503|ref|XP_390942.1| hypothetical protein FG10766.1 [Gibberella zeae PH-1]
          Length = 1343

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  DLFCG G     LE       +E  ++++ +  ++ TY AN           G I 
Sbjct: 809 LRGLDLFCGGGNFGRGLEDGG---GIEMRWANDYDGKALHTYMANTSGPDAVHPFLGSID 865

Query: 58  KIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
            ++         +++P   D D +  G PC  FS 
Sbjct: 866 DMQRFAIQGKFAENVPPVGDVDFISGGSPCPGFSL 900


>gi|225691144|gb|ACO06245.1| methylcytosine methyltransferase M.BbrII [Bifidobacterium breve
          UCC2003]
          Length = 349

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIKTQD 63
           DLFCG GG+ L L+Q      +      + N  +    Y  N     I   +  +  +D
Sbjct: 10 IDLFCGTGGLSLGLKQG----GIRVVAGID-NASACSYPYSHNIKAKFIERSVCDVTGED 64

Query: 64 IP----DHDV--LLAGFPCQPFS 80
          +       DV  L    PCQPFS
Sbjct: 65 LKRLWGQADVRLLAGCAPCQPFS 87


>gi|171185166|ref|YP_001794085.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
 gi|170934378|gb|ACB39639.1| DNA-cytosine methyltransferase [Thermoproteus neutrophilus
          V24Sta]
          Length = 320

 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPDHD----VLLAGFPCQPF 79
                 + EI+  + +TY AN  +T++   DI  I   D+        V++   PC+PF
Sbjct: 25 AGFRIKVAIEIDRDAARTYSANHRSTIVLEEDIRNIGYTDVTKFVKNPRVVIGSPPCEPF 84

Query: 80 SQA 82
          + A
Sbjct: 85 TAA 87


>gi|71064975|ref|YP_263702.1| C-5 cytosine-specific DNA methylase [Psychrobacter arcticus
          273-4]
 gi|71037960|gb|AAZ18268.1| probable C-5 cytosine-specific DNA methylase [Psychrobacter
          arcticus 273-4]
          Length = 520

 Score = 59.4 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
          +K  +LF G GG+ L L+        E    +E++P + +TY  NF N 
Sbjct: 1  MKYIELFAGCGGLSLGLQA----VGFENIMVNELSPMAGETYAYNFYNE 45


>gi|121608158|ref|YP_995965.1| DNA-cytosine methyltransferase [Verminephrobacter eiseniae
          EF01-2]
 gi|121552798|gb|ABM56947.1| DNA-cytosine methyltransferase [Verminephrobacter eiseniae
          EF01-2]
          Length = 349

 Score = 59.4 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQD 63
           DLFCG GG    L   F    +      +++P     Y+ N      +  DI K+ T +
Sbjct: 8  VDLFCGAGG----LTHGFILEGLPVVAGIDLDPACRFPYEKNNAQAKFVERDIGKVTTTE 63

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       D  +L    PCQPFS
Sbjct: 64 LKALFGAADVTILAGCAPCQPFS 86


>gi|308803765|ref|XP_003079195.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
 gi|116057650|emb|CAL53853.1| possible site-specific DNA-methyltransferase (ISS) [Ostreococcus
          tauri]
          Length = 840

 Score = 59.4 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++  LF         L+             +E +P+  +   A FP   +  D+A++  
Sbjct: 15 LRVASLFS----GIGGLDLGLLQAGHRISLMAEKDPHCKQVLAARFPGVALLNDVAEVLP 70

Query: 62 QDIPDHDVLLAGFPCQPFS 80
            + D D +LAGFPC   S
Sbjct: 71 SMLTDIDCILAGFPCNDCS 89


>gi|315054007|ref|XP_003176378.1| hypothetical protein MGYG_00467 [Arthroderma gypseum CBS 118893]
 gi|311338224|gb|EFQ97426.1| hypothetical protein MGYG_00467 [Arthroderma gypseum CBS 118893]
          Length = 1091

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  +LF G G     LE+      +E  ++ E     + TY+AN P+     L  G + 
Sbjct: 633 LKALNLFSGGGTFDRGLEEG---TAIESKWAVEWGLQQMLTYRANHPDGKGLNLFCGSVN 689

Query: 58  KIKTQD-----------IPDHDVLLAGFPCQPFSQA 82
              +Q            I D   + AG PCQ +S A
Sbjct: 690 DYLSQAFRGEEHEYIAGIGDVHFISAGSPCQGYSTA 725


>gi|156060059|ref|XP_001595952.1| hypothetical protein SS1G_02167 [Sclerotinia sclerotiorum 1980]
 gi|154699576|gb|EDN99314.1| hypothetical protein SS1G_02167 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 405

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 29/105 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
           L   D+F G GG+     ++     V   +  E++  + KT + NFP+ +++  D  K  
Sbjct: 265 LTTLDIFSGAGGLSQGFHESGV---VGTKYVIELDTAAAKTLKRNFPDAIVYNHDANKFL 321

Query: 60  -----KTQDIP-------------------DHDVLLAGFPCQPFS 80
                   D+                    D ++++ G PCQ +S
Sbjct: 322 EWVVNDEADLNAGIVYDMENNALLKMPSRGDIEMIIVGPPCQGWS 366


>gi|2895087|gb|AAC39355.1| Met1-type cytosine DNA-methyltransferase [Daucus carota]
          Length = 1545

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++         ++ E    +   ++ N P +L+F           
Sbjct: 1111 LDIFAGCGGLSEGLQKSGV---CTTKWAIEYEEAAGDAFKLNHPESLMFINNCNVILKAI 1167

Query: 54   ----GD----IA---------KIKTQDIPD------HDVLLAGFPCQPFS 80
                GD    I+         K+  ++I +       D +  G PCQ FS
Sbjct: 1168 MDKTGDADDCISTPEAAELAAKLSEEEIKNLPLPGQVDFINGGPPCQGFS 1217


>gi|168056113|ref|XP_001780066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668469|gb|EDQ55075.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 346

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFG 54
           +K+  LF GIGG  + L +     N     S EI     +  Q  +  T       + + 
Sbjct: 218 IKVLSLFSGIGGAEVALHKIGIKLN--VVVSVEIELEPRRCLQTWWSVTNQTGHLDVEYH 275

Query: 55  DIAKIK-------TQDIPDHDVLLAGFPCQPFSQAG 83
           D+  +               D+++ G PC  F  AG
Sbjct: 276 DVRHLTKSVLTRLVNKYQGFDLIVGGSPCNNF--AG 309


>gi|15236676|ref|NP_192638.1| DNA (cytosine-5-)-methyltransferase, putative [Arabidopsis thaliana]
 gi|7267541|emb|CAB78023.1| Met2-type cytosine DNA-methyltransferase-like protein [Arabidopsis
            thaliana]
 gi|332657308|gb|AEE82708.1| DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
          Length = 1512

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE+          ++ E    +   ++ N P   +F           
Sbjct: 1074 LDIFAGCGGLSHGLEKAGVSN---TKWAIEYEEPAGHAFKQNHPEATVFVDNCNVILRAI 1130

Query: 54   ----GD-------------IAKIKTQ---DIP---DHDVLLAGFPCQPFS 80
                GD             +AK+       +P     D +  G PCQ FS
Sbjct: 1131 MEKCGDVDDCVSTVEAAELVAKLDENQKSTLPLPGQADFISGGPPCQGFS 1180


>gi|156548658|ref|XP_001602026.1| PREDICTED: similar to CG10692-PC [Nasonia vitripennis]
          Length = 325

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 27 VECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPD--HDVLLAGFPCQPFSQ 81
           +   S +IN  + K Y+ NFP T  I  +I  +  ++I     D +L   PCQPF++
Sbjct: 14 GKIITSIDINTTANKVYRHNFPETANISRNIESVTVEEIAKLHIDCILMSPPCQPFTR 71


>gi|281212492|gb|EFA86652.1| DNA cytosine-5--methyltransferase [Polysphondylium pallidum PN500]
          Length = 420

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPN----TLIF 53
           L+I + F GIGG+        +    E   S +IN  +   Y  N    +PN     +  
Sbjct: 37  LRILEFFSGIGGMYY--STLISGIPFEVLQSFDINTNANDVYNYNISSKYPNPKKHKVNS 94

Query: 54  GDIAKIKTQDIPDH--DVLLAGFPCQPFSQAG 83
             I  + T+++     +  L   PCQPF++ G
Sbjct: 95  KSIDALTTKELESFRANTWLMSPPCQPFTRVG 126


>gi|209546991|ref|YP_002278909.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538235|gb|ACI58169.1| DNA-cytosine methyltransferase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
          Length = 355

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 26 NVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI-PDHD--VLLAGFPCQPFS 80
           V+   + E +P +  TY AN P   + G DIAK+ T D+ P H   VL  G PCQ FS
Sbjct: 21 GVDVRAAVENHPSACLTYSANHPGATLLGTDIAKVATIDVGPRHQPLVLFGGPPCQGFS 79


>gi|255071197|ref|XP_002507680.1| predicted protein [Micromonas sp. RCC299]
 gi|226522955|gb|ACO68938.1| predicted protein [Micromonas sp. RCC299]
          Length = 1263

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +KI  LF GIGG+ L   Q  +    +     E +       + +FP   +  DI+ +  
Sbjct: 1  MKIVTLFTGIGGLDLGFSQAGH----DVIMQVESDERCASVLKTHFPGARLHRDISSL-- 54

Query: 62 QDIP 65
          +++P
Sbjct: 55 EELP 58


>gi|270292955|ref|ZP_06199166.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270278934|gb|EFA24780.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 95

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
            I DLF G GG+    E              + +  +++T+Q N  N  ++ GDI  I 
Sbjct: 4  YNIVDLFSGAGGLSYGFEMAR----FNVLLGIDNDEKALETFQKNHQNSEILCGDITNIS 59

Query: 61 -TQDIP------DHDVL 70
            +DI         D++
Sbjct: 60 YEKDIKPIIGEQKVDII 76


>gi|163751396|ref|ZP_02158621.1| probable C-5 cytosine-specific DNA methylase [Shewanella benthica
          KT99]
 gi|161328699|gb|EDP99847.1| probable C-5 cytosine-specific DNA methylase [Shewanella benthica
          KT99]
          Length = 532

 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 17/78 (21%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +   +LF G GG+ L L++       +   ++E++P + +T+  NF N            
Sbjct: 1  MNHIELFAGCGGLSLGLDKA----GFKLIMANELSPMAAETFAYNFLNE---------NL 47

Query: 62 QDIPDHDVLLAGFPCQPF 79
          ++I  +D    G P Q +
Sbjct: 48 EEIAKND----GKPKQSY 61


>gi|116193601|ref|XP_001222613.1| hypothetical protein CHGG_06518 [Chaetomium globosum CBS 148.51]
 gi|88182431|gb|EAQ89899.1| hypothetical protein CHGG_06518 [Chaetomium globosum CBS 148.51]
          Length = 748

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAK-I 59
               D+F G GG    +E+      V+  F+ +    +V++ ++NF  + I+  D+A  I
Sbjct: 337 YTAGDVFSGAGGASRGIERA----GVQLLFAVDHWAPAVESLKSNFRESRIYDMDVASFI 392

Query: 60  KTQDI-PDHDVLLAGFPCQPFSQA 82
            + D     D+L    PCQ +S A
Sbjct: 393 TSSDTHWRVDILHLSPPCQFWSPA 416


>gi|301321505|gb|ADK68895.1| Site-specific DNA methylase [Gordonia sp. KTR9]
          Length = 331

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L +TD+F G GG    + Q           ++   P +V T+Q N P+T  I  +++++ 
Sbjct: 18 LTMTDIFSGAGGSSEGMTQAGVSVQ---VAANHW-PVAVATHQVNHPDTEHILANLSEVD 73

Query: 61 TQDIPDHDVLLAGFPC 76
           +  P  D+L A   C
Sbjct: 74 WRSFPSTDILWASPSC 89


>gi|115638547|ref|XP_787412.2| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
 gi|115931470|ref|XP_001187128.1| PREDICTED: similar to DNA methyltransferase 3A [Strongylocentrotus
            purpuratus]
          Length = 1447

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGIG-GI----RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGD 55
            +++  LF G+G G+     L  +       VEC+++SE++  ++          +   GD
Sbjct: 1163 IRVLSLFDGLGTGMLVLRELGFD-------VECYYASEVSEEAITVAAVRLKGQIQQIGD 1215

Query: 56   IAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
            + KI  +++      D+L+ G PC   S 
Sbjct: 1216 VQKITPKELKSWGPFDILIGGSPCNDLSI 1244


>gi|227486883|ref|ZP_03917199.1| DNA restriction-modification system, DNA methylase
          [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541955|ref|ZP_03972004.1| DNA restriction-modification system DNA methylase
          [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092957|gb|EEI28269.1| DNA restriction-modification system, DNA methylase
          [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227182398|gb|EEI63370.1| DNA restriction-modification system DNA methylase
          [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 332

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 23 NHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
               E     EI+  + +T + N      ++  D+           D+   G PC PFS
Sbjct: 25 ERAGFEHLAVVEIDSNACETLRLNRGEEWNIVEQDVHTFDGAPYKGVDLFAGGVPCPPFS 84

Query: 81 QAG 83
           AG
Sbjct: 85 IAG 87


>gi|297739461|emb|CBI29643.3| unnamed protein product [Vitis vinifera]
          Length = 460

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            D+F G GG+   L+Q          ++ E    + + +  N P+ L+F           
Sbjct: 28  LDVFAGCGGLSEGLQQAGVSL---TKWAIEYEEPAGEAFHLNHPDALMFINDCNVILRAI 84

Query: 54  ----GD-------------IAKIKTQDIPD------HDVLLAGFPCQPFS 80
               GD               K+  +DI +       D +  G PCQ FS
Sbjct: 85  MSACGDADDCVSTSEATELAEKLDEKDIRNLPRPGQVDFINGGPPCQGFS 134


>gi|328956110|ref|YP_004373443.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
 gi|328456434|gb|AEB07628.1| DNA-cytosine methyltransferase [Coriobacterium glomerans PW2]
          Length = 513

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 39/136 (28%), Gaps = 56/136 (41%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT------------------ 42
           I DLF G GG+        N       +   S E +P + +T                  
Sbjct: 7   IIDLFAGAGGLGEGFSSACNESGSPAFKIIMSVEKDPLAHRTLRMRAFFRAAYRACGAMP 66

Query: 43  -----YQAN------------FP------------NTLIFGDIAKIKTQDIP------DH 67
                Y  N            FP             TL  GD A ++           D 
Sbjct: 67  ASYINYLQNPSAENLEALRNEFPEQWQQANREALCETLKEGDDALVEEAKRRLDAYGSDS 126

Query: 68  DVLLAGFPCQPFSQAG 83
            +L+ G PCQ +S  G
Sbjct: 127 FILIGGPPCQAYSLVG 142


>gi|322499679|emb|CBZ34753.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 840

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 428 FLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460



 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
              ++LF GIG  R  LE+          F+ E  P +   Y  N 
Sbjct: 317 FTFSELFGGIGMFRSGLERVGGRA----AFAVEFAPPAQIVYALNH 358


>gi|146088814|ref|XP_001466154.1| modification methylase-like protein [Leishmania infantum JPCM5]
 gi|134070256|emb|CAM68593.1| modification methylase-like protein [Leishmania infantum JPCM5]
          Length = 840

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 428 FLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460



 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
              ++LF GIG  R  LE+          F+ E  P +   Y  N 
Sbjct: 317 FTFSELFGGIGMFRSGLERVGGRA----AFAVEFAPPAQIVYALNH 358


>gi|157870650|ref|XP_001683875.1| modification methylase-like protein [Leishmania major]
 gi|68126942|emb|CAJ05189.1| modification methylase-like protein [Leishmania major strain
           Friedlin]
          Length = 840

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 428 FLVGDITEIPSAFFPTHDVLTGGFPCQSFAKAG 460



 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
              ++LF GIG  R  LE+          F+ E  P +   Y  N 
Sbjct: 317 FTFSELFGGIGMFRSGLERVGGRA----AFAVEFAPPAQIVYALNH 358


>gi|116203489|ref|XP_001227555.1| hypothetical protein CHGG_09628 [Chaetomium globosum CBS 148.51]
 gi|88175756|gb|EAQ83224.1| hypothetical protein CHGG_09628 [Chaetomium globosum CBS 148.51]
          Length = 2354

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 17/94 (18%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL------IFGD 55
            L+  DLFCG G     LE+      VE  ++++I   ++ TY AN P++         GD
Sbjct: 1662 LRGMDLFCGSGNFGRGLEEGGA---VEVKWANDIWDRAIHTYMANSPDSTAKPFLGSVGD 1718

Query: 56   IAKIK-----TQDIP---DHDVLLAGFPCQPFSQ 81
            + ++        ++P   D D + AG PC  FS 
Sbjct: 1719 LLQLALEGKYADNVPRPGDVDFISAGSPCPGFSL 1752


>gi|322492416|emb|CBZ27690.1| modification methylase-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 847

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + GDI +I +   P HDVL  GFPCQ F++AG
Sbjct: 435 FLVGDITEIPSAFFPMHDVLTGGFPCQSFAKAG 467



 Score = 42.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
              ++LF GIG  R  LE+     +    F+ E    +   Y  N 
Sbjct: 325 FTFSELFGGIGMFRSGLERVGGRAS----FAVEFALPAQVVYALNH 366


>gi|300728105|ref|ZP_07061477.1| modification methylase HgaIA [Prevotella bryantii B14]
 gi|299774619|gb|EFI71239.1| modification methylase HgaIA [Prevotella bryantii B14]
          Length = 382

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          ++I  LF  IG      E  F   + V    ++E      K YQ+ +P  T+I GDI   
Sbjct: 4  MRIVSLFANIG----VAEACFQELDDVNVVVANEWLTKRAKLYQSIYPESTMICGDITDE 59

Query: 60 KT-QDI------PDHDVLLAGFPCQPFSQAG 83
             Q I         D ++A  PCQ  S AG
Sbjct: 60 NIYQQILQACRRERVDTIMATPPCQGMSTAG 90


>gi|145631945|ref|ZP_01787699.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae R3021]
 gi|145639068|ref|ZP_01794676.1| ABC transporter ATPase component [Haemophilus influenzae PittII]
 gi|144982396|gb|EDJ89970.1| putative 5-methylcytosine methyltransferase [Haemophilus
          influenzae R3021]
 gi|145272040|gb|EDK11949.1| ABC transporter ATPase component [Haemophilus influenzae PittII]
          Length = 79

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L   DLF G GG+ L  +            S E+ P   +TY+ NFP+  ++  D+ ++ 
Sbjct: 3  LTYLDLFSGAGGLSLGFDYA----EFRQLLSIELEPVYCETYRVNFPHHRVLQQDLTQLS 58

Query: 61 TQ-------DIPD 66
           +       DIP+
Sbjct: 59 NEQASLYRSDIPN 71


>gi|313665138|ref|YP_004047009.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
 gi|312949950|gb|ADR24546.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma leachii PG50]
          Length = 342

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 13/74 (17%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI--------PDHDV 69
          EQ             E +  +V+T + N PN  +IF D+ K   +D+         + D+
Sbjct: 22 EQAGFEH----IGLVEFDKQAVETLKFNRPNWNIIFEDVQKASQRDLKKEFNLKERELDL 77

Query: 70 LLAGFPCQPFSQAG 83
          L  G PCQ FS AG
Sbjct: 78 LSGGAPCQSFSYAG 91


>gi|145348185|ref|XP_001418536.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578765|gb|ABO96829.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 371

 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++ +++CG+G +   L +       E   + ++NP +   Y  N+        +  +  
Sbjct: 29  LRVLEMYCGVGVMHAALRRARGDE-AEVCGAYDVNPNACDAYAMNYGTRPSQKSLVSVAM 87

Query: 62  QDI--PDHDVLLAGFPCQPFSQAG 83
           + +     +      PCQPF++AG
Sbjct: 88  ETLVKTKAEAWAMSPPCQPFTRAG 111


>gi|326779115|ref|ZP_08238380.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
 gi|326659448|gb|EGE44294.1| DNA-cytosine methyltransferase [Streptomyces cf. griseus XylebKG-1]
          Length = 433

 Score = 58.6 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 36/114 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGD 55
           L   ++  G GG  + L Q       +     EI+ ++ +T + N      +     + D
Sbjct: 8   LTSIEICAGAGGQAIGLHQA----GFKHLALVEIDKHAAETLEWNIKRRESWSWEREYCD 63

Query: 56  I--------AKIKTQDI------------------PDHDVLLAGFPCQPFSQAG 83
           +          I + DI                   D D+L  G PC PFS AG
Sbjct: 64  VISDDVNNFRPIPSDDIQDSGLDKPVKFLGRQLRRGDLDLLAGGVPCPPFSHAG 117


>gi|190404528|ref|YP_001965292.1| C-5 cytosine-specific DNA methylase [Amycolatopsis mediterranei]
 gi|161087214|gb|ABX56703.1| C-5 cytosine-specific DNA methylase [Amycolatopsis mediterranei]
          Length = 541

 Score = 58.6 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPD 66
          F G GG R  +             ++  NP ++ T+  NFP    + GDIAK      P 
Sbjct: 9  FAGFGGERTGVLAVPGTHG--VLGAN-HNPDAIATHALNFPGMDHYEGDIAKADIGTFPR 65

Query: 67 HDVLLAGFPCQPFSQA 82
           D   A   C P++ A
Sbjct: 66 VDFFWASPSCPPWTDA 81


>gi|254244955|ref|ZP_04938277.1| hypothetical protein PA2G_05834 [Pseudomonas aeruginosa 2192]
 gi|126198333|gb|EAZ62396.1| hypothetical protein PA2G_05834 [Pseudomonas aeruginosa 2192]
          Length = 475

 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +    +  GI          ++       + +EI P+        +P     GD+ K+  
Sbjct: 5  ITYGSVCSGI----EAASVAWHMLGFRASWFAEIEPFPSAVLAQRWPAVPNLGDMTKLAR 60

Query: 62 QDIPDHD----VLLAGFPCQPFSQAG 83
          + +        +L+ G PCQ FS AG
Sbjct: 61 EVLLGIIAAPLILVGGTPCQDFSVAG 86


>gi|291562973|emb|CBL41789.1| DNA-methyltransferase (dcm) [butyrate-producing bacterium SS3/4]
          Length = 367

 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 25/103 (24%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------F 53
           LKI   F G G + L  E+       E  F +E +P  +K Y+ +     I         
Sbjct: 6   LKIFSFFSGSGFLDLGFEK----NGFEIVFVNEFHPAFMKAYKYSRKKMKIKEPEYGYFN 61

Query: 54  GDIAKI-------------KTQDIPDHDVLLAGFPCQPFSQAG 83
           GDI +                +        + G PC  FS AG
Sbjct: 62  GDINEFLLNRKNELYQWMQDARKDGSLVGFIGGPPCPDFSIAG 104


>gi|256379578|ref|YP_003103238.1| C-5 cytosine-specific DNA methylase [Actinosynnema mirum DSM
          43827]
 gi|255923881|gb|ACU39392.1| C-5 cytosine-specific DNA methylase [Actinosynnema mirum DSM
          43827]
          Length = 496

 Score = 58.6 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKI 59
          ML  TDLFCG GG  L          ++   ++  +P +++T+  NFP+      DI+++
Sbjct: 1  MLTATDLFCGAGGSGLG---ATAVPGIQLVMAANHSPRAIETHATNFPHCQHDCADISQV 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQA 82
            +     ++L A   C   + A
Sbjct: 58 VPRRYRRTNILWASPECTNHTTA 80


>gi|3132825|gb|AAC16389.1| putative cytosine-5 DNA methyltransferase [Zea mays]
          Length = 1525

 Score = 58.2 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + +  N P  ++F           
Sbjct: 1084 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAI 1140

Query: 54   ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
                GD                + ++   ++P   + + +  G PCQ FS
Sbjct: 1141 MDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFS 1190


>gi|291320302|ref|YP_003515564.1| cytosine specific methyltransferase [Mycoplasma agalactiae]
 gi|290752635|emb|CBH40608.1| Cytosine specific methyltransferase [Mycoplasma agalactiae]
          Length = 339

 Score = 58.2 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP--------DHDV 69
          E+   +         E +  + +T + N  +  +   DI KI  +D+         + D+
Sbjct: 20 EKAGFNH----IGLVEFDKDACQTLRNNRSSWNVYEEDIRKIALRDLEKEFKIKKYELDL 75

Query: 70 LLAGFPCQPFSQAG 83
          L  G PCQ FS AG
Sbjct: 76 LSGGAPCQSFSYAG 89


>gi|302381289|ref|YP_003817112.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
          15264]
 gi|302191917|gb|ADK99488.1| DNA-cytosine methyltransferase [Brevundimonas subvibrioides ATCC
          15264]
          Length = 384

 Score = 58.2 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
             F+++++     +++AN    +  GD+  +   D+P   D+  A  PCQ  S AG
Sbjct: 29 RTLFANDMDRAKAASWRANHAGDIHVGDVWTLDAGDLPGRADLAWASSPCQDVSLAG 85


>gi|15236413|ref|NP_193150.1| DMT2 (DNA METHYLTRANSFERASE 2); DNA (cytosine-5-)-methyltransferase/
            DNA binding / protein binding [Arabidopsis thaliana]
 gi|2244770|emb|CAB10193.1| (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|7268119|emb|CAB78456.1| (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|332657979|gb|AEE83379.1| DNA methyltransferase 2 [Arabidopsis thaliana]
          Length = 1519

 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE           ++ E    +   ++ N P   +F           
Sbjct: 1081 LDIFAGCGGLSHGLENAGVST---TKWAIEYEEPAGHAFKQNHPEATVFVDNCNVILRAI 1137

Query: 54   ----GDI-------------AKIKTQ---DIP---DHDVLLAGFPCQPFS 80
                GD+             AK+       +P     D +  G PCQ FS
Sbjct: 1138 MEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQGFS 1187


>gi|6523846|gb|AAF14882.1|AF138283_1 cytosine-5 methyltransferase [Arabidopsis thaliana]
          Length = 1517

 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   LE           ++ E    +   ++ N P   +F           
Sbjct: 1079 LDIFAGCGGLSHGLENAGVST---TKWAIEYEEPAGHAFKQNHPEATVFVDNCNVILRAI 1135

Query: 54   ----GDI-------------AKIKTQ---DIP---DHDVLLAGFPCQPFS 80
                GD+             AK+       +P     D +  G PCQ FS
Sbjct: 1136 MEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQGFS 1185


>gi|162463699|ref|NP_001105186.1| DNA methyl transferase1 [Zea mays]
 gi|20977598|gb|AAM28226.1| DNA methyltransferase 101 [Zea mays]
          Length = 1457

 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + +  N P  ++F           
Sbjct: 1016 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAI 1072

Query: 54   ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
                GD                + ++   ++P   + + +  G PCQ FS
Sbjct: 1073 MDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFS 1122


>gi|322700739|gb|EFY92492.1| putative DNA cytosine methyltransferase [Metarhizium acridum CQMa
           102]
          Length = 950

 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPN--TLIFGDIA 57
           L+  DLFCG G     LE+      V   ++++ N  ++ TY AN   PN  +   G I 
Sbjct: 477 LRGLDLFCGGGNFGRGLEEGGA---VRMSWANDCNARAIHTYMANCSHPNLLSPYLGSID 533

Query: 58  KIKTQ-----------DIPDHDVLLAGFPCQPFSQ 81
             + +            I   D +  G PC  FS 
Sbjct: 534 DFQKEAFSGNFSKSVPTIGSVDFISGGSPCPGFSL 568


>gi|255573870|ref|XP_002527854.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
 gi|223532778|gb|EEF34557.1| DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
          Length = 1584

 Score = 58.2 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------------ 52
             D+F G GG+   LE+          ++ E    + + ++ N P  L+            
Sbjct: 1127 LDIFAGCGGLSEGLERAGISV---TKWAIEYEEPAGEAFKQNHPEALMLINNCNVILRAI 1183

Query: 53   ---FGD----IA---------KIKTQDIPDH------DVLLAGFPCQPFS 80
                GD    I          K+  ++I +       + +  G PCQ FS
Sbjct: 1184 MSACGDADDCICTSEASELAEKLDEKEISNFPRPGEVEFINGGPPCQGFS 1233


>gi|159461702|gb|ABW96890.1| DRM-type DNA-methyltransferase [Elaeis guineensis]
          Length = 591

 Score = 57.8 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 15/92 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +   H  ++   S EI+  +    ++ +  T   G      D
Sbjct: 466 ITVLSLFSGIGGAEVALHRLGIH--LKTVVSVEISDVNRNILKSWWEQTNQTGELIDLFD 523

Query: 56  IAKIKTQDIPD-------HDVLLAGFPCQPFS 80
           + ++    +          D+++ G PC   S
Sbjct: 524 VQELNGDKLEQMINTFGGFDLVIGGSPCNNLS 555


>gi|48374276|gb|AAT41966.1| putative DNA methyl transferase [Fremyella diplosiphon Fd33]
          Length = 104

 Score = 57.8 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
           DLF G GG+ L  EQ       +   S EI+P     ++ NFP
Sbjct: 46 VDLFAGAGGMTLGFEQA----GFDVLASVEIDPIHCAIHEFNFP 85


>gi|187939824|gb|ACD38964.1| DNA-cytosine methyltransferase [Pseudomonas aeruginosa]
          Length = 572

 Score = 57.8 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 21 TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD----IAKIKTQDIPDHDVLLAGFPC 76
                    + +EI P+       ++P+    GD    I +I T  I    + +AG PC
Sbjct: 22 ALEPIGFRARWFAEIEPFPSAVLAHHYPSVPNHGDMTKLIRRILTGAIEAPPLAIAGTPC 81

Query: 77 QPFSQAG 83
          Q FS AG
Sbjct: 82 QAFSVAG 88


>gi|297792161|ref|XP_002863965.1| hypothetical protein ARALYDRAFT_331330 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309800|gb|EFH40224.1| hypothetical protein ARALYDRAFT_331330 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1532

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L++       +  ++ E    + + ++ N P + +F           
Sbjct: 1094 LDIFAGCGGLSQGLKKAGVS---DTKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAI 1150

Query: 54   ----GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                GD    ++  +  ++                  D +  G PCQ FS
Sbjct: 1151 MEKGGDQDDCVSTTEANELAAKLAEDQKSTLPLPGQVDFINGGPPCQGFS 1200


>gi|242043138|ref|XP_002459440.1| hypothetical protein SORBIDRAFT_02g004680 [Sorghum bicolor]
 gi|241922817|gb|EER95961.1| hypothetical protein SORBIDRAFT_02g004680 [Sorghum bicolor]
          Length = 1397

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + +  N P  ++F           
Sbjct: 955  LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFSKNHPEAVVFVDNCNVILKAI 1011

Query: 54   ----GD----IA------------KIKTQDIP---DHDVLLAGFPCQPFS 80
                GD    I+            ++   ++P   + + +  G PCQ FS
Sbjct: 1012 MDKCGDTDDCISTSEAAEQAAKLPELNINNLPVPGEVEFINGGPPCQGFS 1061


>gi|242023477|ref|XP_002432160.1| DNA methyltransferase, putative [Pediculus humanus corporis]
 gi|212517542|gb|EEB19422.1| DNA methyltransferase, putative [Pediculus humanus corporis]
          Length = 1161

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 19/95 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
           LK  + F G GG+   L Q+      +  ++ +I+  + + ++ NF N ++F        
Sbjct: 698 LKTLNAFSGCGGLAEGLRQSGIA---DIAWAIDIDKPTSEAFKLNFSNIVMFESDCNFFL 754

Query: 60  -----------KTQDIPD---HDVLLAGFPCQPFS 80
                           P+    + L  G PCQ FS
Sbjct: 755 KEVLSGKTFDKDGNRYPEKGEVEFLCGGPPCQGFS 789


>gi|28198487|ref|NP_778801.1| site-specific DNA-methyltransferase [Xylella fastidiosa
          Temecula1]
 gi|182681164|ref|YP_001829324.1| DNA-cytosine methyltransferase [Xylella fastidiosa M23]
 gi|28056571|gb|AAO28450.1| site-specific DNA-methyltransferase [Xylella fastidiosa
          Temecula1]
 gi|182631274|gb|ACB92050.1| DNA-cytosine methyltransferase [Xylella fastidiosa M23]
 gi|307579611|gb|ADN63580.1| DNA-cytosine methyltransferase [Xylella fastidiosa subsp.
          fastidiosa GB514]
          Length = 355

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG+GG+   L +      +      +I+P     ++AN     +  D+A++K   +
Sbjct: 17 VDLFCGVGGLTHGLARG----GISVAAGIDIDPNCQFPFEANNAALFLECDVARLKAAAV 72

Query: 65 P------DHDVLLAGFPCQPFS 80
                 D  +L    PCQPFS
Sbjct: 73 RGFYQAADITLLAGCAPCQPFS 94


>gi|159490457|ref|XP_001703193.1| DNA methyltransferase [Chlamydomonas reinhardtii]
 gi|158270733|gb|EDO96569.1| DNA methyltransferase [Chlamydomonas reinhardtii]
          Length = 539

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTF----NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +I DL+ G+G +   L +          V+   + +IN  +   Y           D+ +
Sbjct: 31  RILDLYSGVGCLHAALGRPGVLPPGCTQVQVAAAVDINTAANAVYAVEHGTEPRALDLTR 90

Query: 59  IKTQDIPD--HDVLLAGFPCQPFS 80
           +    +     DV L   PCQP++
Sbjct: 91  VTAAQLDALCADVWLLTPPCQPYT 114


>gi|168010951|ref|XP_001758167.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690623|gb|EDQ76989.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1579

 Score = 57.8 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L Q          ++ E    + + +  N P T +F           
Sbjct: 1131 LDIFAGCGGLSEGLRQAGVAT---TKWAIEYEHPASEAFNLNHPETNVFCENCNVILRCI 1187

Query: 54   ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
                GD                ++  K + +P   + D +  G PCQ FS
Sbjct: 1188 MERGGDSDECLSTPDAQEMASALSDEKKKLLPAQGEVDFINGGPPCQGFS 1237


>gi|260221504|emb|CBA30135.1| hypothetical protein Csp_C22030 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 151

 Score = 57.5 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 2  LK-ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DI 56
          +K   DLF G G   L   +      +    + ++   +  TY+ANFP+ +       DI
Sbjct: 1  MKHFVDLFSGGG---LGA-RGAVMAGLTPILAVDMWDMACDTYRANFPSAIALNQRVDDI 56

Query: 57 AKIKTQDIPDHDVLLAGFPCQPFSQA 82
            ++       D+LLA   C   S A
Sbjct: 57 NPLEHIKREAVDLLLASPECTNHSVA 82


>gi|253995855|ref|YP_003047919.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
 gi|253982534|gb|ACT47392.1| DNA-cytosine methyltransferase [Methylotenera mobilis JLW8]
          Length = 387

 Score = 57.5 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 22/99 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFP---NTLIFG 54
           K+   F G G + L  E++      +  F +E +   +  Y+      N P   +    G
Sbjct: 8   KVFSFFSGSGFLDLGFEKS----GFDVVFVNEHHKPFLDAYKHSRKKMNLPAPKHGYFEG 63

Query: 55  DI------AKIK--TQDIPDHDVL--LAGFPCQPFSQAG 83
            +       K++   + +   D++  + G PC  FS AG
Sbjct: 64  SVDSEPLKRKVEFLIESLKKTDIVGFIGGPPCPDFSVAG 102


>gi|213692027|ref|YP_002322613.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213523488|gb|ACJ52235.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 354

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+ L L+Q      V      +        Y+ N     +   + ++   ++
Sbjct: 10 IDLFCGTGGLSLGLKQG----GVRVVAGIDNAASCAYPYEENIKAKFVRKSVREVTGDEL 65

Query: 65 P------DHDVLLAGFPCQPFS 80
                    +L    PCQPFS
Sbjct: 66 KRLWGRSSVRLLAGCAPCQPFS 87


>gi|71899200|ref|ZP_00681363.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
 gi|71731058|gb|EAO33126.1| C-5 cytosine-specific DNA methylase [Xylella fastidiosa Ann-1]
          Length = 387

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG+GG+   L +      +      +I+P     ++AN     +  D+A++K   +
Sbjct: 17 VDLFCGVGGLTHGLARG----GISVAAGIDIDPNCQFPFEANNAALFLECDVARLKAAAV 72

Query: 65 P------DHDVLLAGFPCQPFS 80
                 D  +L    PCQPFS
Sbjct: 73 KGFYQAADITLLAGCAPCQPFS 94


>gi|322708438|gb|EFZ00016.1| DNA (cytosine-5)-methyltransferase, putative [Metarhizium
           anisopliae ARSEF 23]
          Length = 1166

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPN--TLIFGDIA 57
           L+  DLFCG G     LE+      V   ++++ N  ++ TY AN   PN  +   G I 
Sbjct: 682 LRGLDLFCGGGNFGRGLEEGGA---VRMSWANDCNARAIHTYMANCSHPNLMSPFLGSID 738

Query: 58  KIKTQ-----------DIPDHDVLLAGFPCQPFS 80
             + +            I   D +  G PC  FS
Sbjct: 739 DFQREAFSGNFSKSVPTIGSVDFISGGSPCPGFS 772


>gi|308183975|ref|YP_003928108.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
 gi|308059895|gb|ADO01791.1| DNA-cytosine methyltransferase [Helicobacter pylori SJM180]
          Length = 414

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 31/120 (25%), Gaps = 44/120 (36%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-------------YQAN----- 46
            DLF G GG+ L    T            E     + T             Y+A      
Sbjct: 7   IDLFSGAGGLSLGFANTNR---FNILAHIEWEKPMITTLRNDLIKRFKISEYEARKRVIK 63

Query: 47  -------------FPNT--LIFGDIAKIKTQDI--------PDHDVLLAGFPCQPFSQAG 83
                        + +    I+G                     DV+  G PCQ +S AG
Sbjct: 64  FDIQKTDELINGSWSDETLKIYGSDNDESVSQFGLNGIISGKKIDVIFGGPPCQAYSLAG 123


>gi|83310850|ref|YP_421114.1| site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82945691|dbj|BAE50555.1| Site-specific DNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 406

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDIAKIKT 61
          L  G GG+ L L               E    +  T  A           ++ D+A    
Sbjct: 3  LCAGAGGLELGLHIAL--PGYRTVGYVEREAGAAATLVARMADASLDTAPVWDDVATFDG 60

Query: 62 QDIPD-HDVLLAGFPCQPFSQAG 83
          +      D++  G+PCQ  S AG
Sbjct: 61 RPWRGIVDLVSGGYPCQGESNAG 83


>gi|291536942|emb|CBL10054.1| Site-specific DNA methylase [Roseburia intestinalis M50/1]
          Length = 840

 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 25/100 (25%)

Query: 2   LKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGD 55
           L    LF   G+G         F     EC  ++E+    +   + N    F +  I  D
Sbjct: 7   LTYISLFSCAGVGCF------GFKKAGFECIATNELIERRINVQKFNDKCKFDSGYICDD 60

Query: 56  IAKIKTQ-----DIPD--------HDVLLAGFPCQPFSQA 82
           I   +T+     +I           DVL+A  PCQ  S A
Sbjct: 61  ITTEETKNKIFAEIKKWEKMGNDKVDVLIATPPCQGMSVA 100


>gi|60544836|gb|AAX22756.1| DMT1 [Arabidopsis thaliana]
          Length = 1431

 Score = 57.1 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L++       +  ++ E    + + ++ N P + +F           
Sbjct: 1064 LDIFAGCGGLSHGLKKAGVS---DAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAI 1120

Query: 54   ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
                GD                + + +   +P     D +  G PCQ FS
Sbjct: 1121 MEKGGDQDDCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFS 1170


>gi|15239810|ref|NP_199727.1| MET1 (METHYLTRANSFERASE 1); methyltransferase [Arabidopsis thaliana]
 gi|462650|sp|P34881|DNMT1_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase 1; AltName: Full=DNA
            methyltransferase 01; AltName: Full=DNA methyltransferase
            2; AltName: Full=DNA methyltransferase AthI; Short=DNA
            Metase AthI; Short=M.AthI; AltName: Full=DNA
            methyltransferase DDM2; AltName: Full=Protein DECREASED
            DNA METHYLATION 2
 gi|304107|gb|AAA32829.1| cytosine-5 methyltransferase [Arabidopsis thaliana]
 gi|10177145|dbj|BAB10334.1| DNA (cytosine-5)-methyltransferase [Arabidopsis thaliana]
 gi|332008394|gb|AED95777.1| DNA (cytosine-5)-methyltransferase 1 [Arabidopsis thaliana]
          Length = 1534

 Score = 57.1 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L++       +  ++ E    + + ++ N P + +F           
Sbjct: 1096 LDIFAGCGGLSHGLKKAGVS---DAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAI 1152

Query: 54   ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
                GD                + + +   +P     D +  G PCQ FS
Sbjct: 1153 MEKGGDQDDCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFS 1202


>gi|83950654|ref|ZP_00959387.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius nubinhibens ISM]
 gi|83838553|gb|EAP77849.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius nubinhibens ISM]
          Length = 504

 Score = 57.1 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 53/132 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQAN--------------- 46
           I DLF G GG+     Q       +++   S E+   +V+T +                 
Sbjct: 7   IIDLFAGPGGLGEGFTQAGRAGDVSMKIQLSVEMEANAVQTLRLRSFLRRFGEEFPAEYY 66

Query: 47  --------FPN-----------------TLIFGD----------IAKIKTQDIPDHDVLL 71
                   FPN                  L+ GD          I K++T D   + +L+
Sbjct: 67  AALNKGVEFPNWSELYPEEWKHAEQEVRQLVLGDPGVFDEIAVVIDKVRT-DFQGNTILI 125

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S AG
Sbjct: 126 GGPPCQAYSLAG 137


>gi|302184862|ref|ZP_07261535.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. syringae
           642]
          Length = 529

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 50/132 (37%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--YQANF--------PNTL 51
            +I DLF G GG+        + +  +   S+E++P + KT   +A F         +  
Sbjct: 7   FQIVDLFSGPGGLSEGFASFKDGKQFKIIVSAEMDPIAHKTLMLRAYFRLLNSEAPDHKK 66

Query: 52  IFGD----IAKIKTQDIPDH---------------D---------------------VLL 71
            + D    I+K    ++ +H               D                     VL+
Sbjct: 67  DYYDYCNGISKKPYSNVTEHLWNKAKKEANCLTLGDEKDNFKLDTMIKDRLLSNQPWVLI 126

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S AG
Sbjct: 127 GGPPCQAYSLAG 138


>gi|187934575|ref|YP_001885133.1| DNA methyltransferase [Clostridium botulinum B str. Eklund 17B]
 gi|187722728|gb|ACD23949.1| DNA (cytosine-5-)-methyltransferase [Clostridium botulinum B str.
          Eklund 17B]
          Length = 213

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 23/88 (26%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F     E  +S E N          F N     DI K
Sbjct: 4  MKVLELFAGTRSIG-------KAFEKNGHE-VYSIEWNKD--------FENIDWNTDIGK 47

Query: 59 IKTQDIPDH----DVLLAGFPCQPFSQA 82
          IK  DI +     DV+ A   C  +S A
Sbjct: 48 IKANDILERFGKPDVIWASPDCTSYSIA 75


>gi|167625969|ref|YP_001676263.1| DNA-cytosine methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167355991|gb|ABZ78604.1| DNA-cytosine methyltransferase [Shewanella halifaxensis HAW-EB4]
          Length = 530

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
          +   +LF G GG+ L LEQ+      E   ++E++P + +++  NF N 
Sbjct: 1  MNHIELFSGCGGLSLGLEQS----GFELTMANELSPMAAESFAYNFFNE 45


>gi|307704727|ref|ZP_07641624.1| modification methylase, putative [Streptococcus mitis SK597]
 gi|307621706|gb|EFO00746.1| modification methylase, putative [Streptococcus mitis SK597]
          Length = 426

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 19/95 (20%)

Query: 1  MLKITDLFC--GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIA 57
          M     LF   GIG   L L    +   +E   + E+     + +Q N PN+ +F GDI 
Sbjct: 1  MKNAISLFSSSGIG--DLGL----HKNGIETVVACELLKERAELFQVNNPNSKVFNGDIW 54

Query: 58 KIKTQDIPDH---------DVLLAGFPCQPFSQAG 83
          ++   DI D+          ++LA  PCQ  S  G
Sbjct: 55 EL-EDDIVDYYQTNFKGNPFIILATPPCQGMSSNG 88


>gi|325996923|gb|ADZ49131.1| adenine/cytosine specific DNA methyltransferase [Helicobacter
           pylori 2017]
          Length = 822

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N    F    I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINNKCKFDEGYICGDIK 62

Query: 58  KIKTQD-IPD-------------HDVLLAGFPCQPFSQA 82
           +++ ++ I                D+++A  PCQ  S A
Sbjct: 63  ELEIKEKILKQIGFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|307636739|gb|ADN79189.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori 908]
 gi|325995325|gb|ADZ50730.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori 2018]
          Length = 822

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N    F    I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINNKCKFDEGYICGDIK 62

Query: 58  KIKTQD-IPD-------------HDVLLAGFPCQPFSQA 82
           +++ ++ I                D+++A  PCQ  S A
Sbjct: 63  ELEIKEKILKQIGFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|294664029|ref|ZP_06729437.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
 gi|292606198|gb|EFF49441.1| DNA cytosine-5 -methyltransferase PliMCI [Xanthomonas fuscans
          subsp. aurantifolii str. ICPB 10535]
          Length = 370

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--FPNTLIFGDIAKI 59
           K+ DLF         L         E   S E +  +  T +AN      ++ GD++ +
Sbjct: 6  FKVIDLFA----GAGGLGVGAYQAGAEVAASVESDSVACDTLRANADIHGQVLEGDVSLL 61

Query: 60 KTQD------IPDHDVL--LAGFPCQPFSQA 82
            +D      +   DVL  + G PCQPFS+A
Sbjct: 62 SGKDVLTMARLSKGDVLVVVGGPPCQPFSKA 92


>gi|296084836|emb|CBI27718.3| unnamed protein product [Vitis vinifera]
          Length = 1429

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q+         ++ E    +   ++ N P +L+F           
Sbjct: 994  LDIFAGCGGLSEGLQQSGVSV---TKWAIEYEEPAGDAFKLNHPESLMFINNCNVILRAV 1050

Query: 54   ----GD----IA------------KIKTQDIP---DHDVLLAGFPCQPFS 80
                GD    I+            +    ++P     D +  G PCQ FS
Sbjct: 1051 MEKCGDDDDCISTSEAAELAAALGEKDINNLPLPGQVDFINGGPPCQGFS 1100


>gi|312901967|ref|ZP_07761229.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
 gi|311290903|gb|EFQ69459.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0470]
          Length = 412

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---------------- 45
           + I DLF G GG+          +        E++  +  + +                 
Sbjct: 1   MNIIDLFSGCGGLTEGF----RIKQFNMVCHIEMDKDACNSLRTREAYQYMKEKKDLSMY 56

Query: 46  -------------------NFPNTLIFGDIA----------KIKTQDIPDHDVLLAGFPC 76
                              N  N +I  +I+           I   D    D ++ G PC
Sbjct: 57  NSYLLGKIQRDELYKSIPINLMNKIINCEISCSTINNLIKKIIDLSDGETIDGIIGGPPC 116

Query: 77  QPFSQAG 83
           Q +S  G
Sbjct: 117 QAYSTIG 123


>gi|242780736|ref|XP_002479658.1| C-5 cytosine methyltransferase DmtA [Talaromyces stipitatus ATCC
           10500]
 gi|218719805|gb|EED19224.1| C-5 cytosine methyltransferase DmtA [Talaromyces stipitatus ATCC
           10500]
          Length = 611

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-D----IAK 58
             D FCG GG+ +   +      +   +  +I+  + KT+  NF ++  +  D    IA 
Sbjct: 299 FGDAFCGAGGVSVGAWKA----GLRVKYGIDIDKAACKTWGTNFVHSDCYHADFYSWIA- 353

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQA 82
           ++  ++   D+  +  PCQPFS A
Sbjct: 354 LQDDEV-RVDISHSSPPCQPFSPA 376


>gi|225683838|gb|EEH22122.1| c5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb03]
          Length = 571

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
               D FCG GG+     Q     N    +  + +  ++ +Y+ NF   + +  D+A   
Sbjct: 300 YTFGDGFCGAGGVSRGALQAGLQLN----WGFDHSVAAMNSYRLNFETAIGYTSDVADFL 355

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
              T +I   D+L    PCQ FS A
Sbjct: 356 ANNTDEI-IIDILHFSPPCQTFSPA 379


>gi|156055406|ref|XP_001593627.1| hypothetical protein SS1G_05055 [Sclerotinia sclerotiorum 1980]
 gi|154702839|gb|EDO02578.1| hypothetical protein SS1G_05055 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1126

 Score = 57.1 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---GDI-- 56
           L   D FCG GG             +   +  + +P++  T++ NFP    +    D   
Sbjct: 722 LTYGDAFCGAGGTTRGAVMA----GLRVKWGFDFDPHACTTWRLNFPYATCYEMSSDRFV 777

Query: 57  --------AKIKTQDIPDHDVLLAGFPCQPFSQA 82
                   +     D+   D+L    PCQ FS A
Sbjct: 778 ALATPSPYSSFTPNDV-KVDILHLSPPCQYFSPA 810


>gi|255280097|ref|ZP_05344652.1| site-specific DNA methylase [Bryantella formatexigens DSM 14469]
 gi|255269188|gb|EET62393.1| site-specific DNA methylase [Bryantella formatexigens DSM 14469]
          Length = 351

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          I DLF G GG    +E       V+   + + +P +++ ++ N P TL    D+ ++  Q
Sbjct: 6  IIDLFAGGGGASTGIEMALGRH-VDI--AVDHDPEAIRIHKTNHPGTLHLTEDVFRVNLQ 62

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
          +        ++ A   C  FS+A
Sbjct: 63 EYVKGRHVALMWASPDCTQFSRA 85


>gi|225463167|ref|XP_002267200.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1549

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q+         ++ E    +   ++ N P +L+F           
Sbjct: 1114 LDIFAGCGGLSEGLQQSGVSV---TKWAIEYEEPAGDAFKLNHPESLMFINNCNVILRAV 1170

Query: 54   ----GD----IA------------KIKTQDIP---DHDVLLAGFPCQPFS 80
                GD    I+            +    ++P     D +  G PCQ FS
Sbjct: 1171 MEKCGDDDDCISTSEAAELAAALGEKDINNLPLPGQVDFINGGPPCQGFS 1220


>gi|218192371|gb|EEC74798.1| hypothetical protein OsI_10599 [Oryza sativa Indica Group]
          Length = 1760

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + DL+ G G    G+ L     F+  N+E  ++ +IN Y+  + + N P    +  +   
Sbjct: 455 LLDLYSGCGAMSTGLCLGF--AFSGINLETRWAVDINKYACASLKHNHP----YSQVRNE 508

Query: 60  KTQDI 64
           KT+D 
Sbjct: 509 KTEDF 513



 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 627 VDVICGGPPCQGIS 640


>gi|2832630|emb|CAA16759.1| putative protein [Arabidopsis thaliana]
 gi|7268696|emb|CAB78904.1| putative protein [Arabidopsis thaliana]
          Length = 1171

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGD 55
           + DL+ G GG+   L        V+    ++ + N  + K+ + N PNT +  D
Sbjct: 678 VLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRND 731


>gi|14583094|gb|AAK69757.1|AF383171_1 chromomethylase CMT2 [Arabidopsis thaliana]
          Length = 1244

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGD 55
           + DL+ G GG+   L        V+    ++ + N  + K+ + N PNT +  D
Sbjct: 678 VLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRND 731


>gi|42566945|ref|NP_193637.2| CMT2 (chromomethylase 2); DNA binding / chromatin binding
           [Arabidopsis thaliana]
 gi|322510132|sp|Q94F87|CMT2_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase CMT2; AltName:
           Full=Chromomethylase 2; AltName: Full=Protein
           CHROMOMETHYLASE 2
 gi|332658726|gb|AEE84126.1| chromomethylase 2 [Arabidopsis thaliana]
          Length = 1295

 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGD 55
           + DL+ G GG+   L        V+    ++ + N  + K+ + N PNT +  D
Sbjct: 729 VLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRND 782


>gi|317013479|gb|ADU80915.1| type II R-M system methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 822

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N    F    I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINHKCKFDEGYICGDIK 62

Query: 58  KIKTQD-IPD-------------HDVLLAGFPCQPFSQA 82
           +++ ++ I                D+++A  PCQ  S A
Sbjct: 63  ELEIKEKILKRIGFYSKNFGNDRVDLVVATPPCQGMSVA 101


>gi|226293221|gb|EEH48641.1| C-5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb18]
          Length = 654

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
               D FCG GG+     Q     N    +  + +  ++ +Y+ NF   + +  D+A   
Sbjct: 327 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSVAAMNSYRLNFETAIGYTSDVADFL 382

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
              T +I   D+L    PCQ FS A
Sbjct: 383 ANNTDEI-IIDILHFSPPCQTFSPA 406


>gi|120609258|ref|YP_968936.1| DNA-cytosine methyltransferase [Acidovorax citrulli AAC00-1]
 gi|120587722|gb|ABM31162.1| DNA-cytosine methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 486

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIA----KIKTQD 63
            GI      +   +    +   + +E + ++       FP     GD+     +I+ ++
Sbjct: 17 CSGI----EAVSLAWEPLGLRPAWFAETDAFASAVLAHRFPQVPNLGDMTLLARRIRARE 72

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +    VL+ G PCQ FS AG
Sbjct: 73 VAAPAVLVGGTPCQSFSTAG 92


>gi|159461698|gb|ABW96888.1| MET1-type DNA-methyltransferase [Elaeis guineensis]
          Length = 1543

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q+         ++ E    + + +  N P TL+F D   +     
Sbjct: 1108 LDIFAGCGGLSAGLQQSGVSF---TKWAIEYEQPAGEAFSENHPETLMFIDNCNVILRAI 1164

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                      K +++P   + D +  G PCQ FS
Sbjct: 1165 MEKCGDADDCVATDEAVKLATGLDEEKLKNLPMPGEVDFINGGPPCQGFS 1214


>gi|126341517|ref|XP_001377353.1| PREDICTED: similar to putative DNA methyltransferase [Monodelphis
          domestica]
          Length = 384

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          E   + ++N  + + Y+ NFP+T ++   I  I  ++      +++L   PCQPF++ G
Sbjct: 19 EVVAAVDVNTIANEVYKHNFPHTQLWAKTIEGITLKEFNQLSFNMILMSPPCQPFTRIG 77


>gi|289810948|ref|ZP_06541577.1| DNA cytosine methylase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 121

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI 35
            +  DLF GIGGIR   E        +C F+SE 
Sbjct: 92  FRFIDLFAGIGGIRRGFEA----IGGQCVFTSEW 121


>gi|321467881|gb|EFX78869.1| Dpahnia pulex DNMT3 [Daphnia pulex]
          Length = 480

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----GDIA 57
           L++  LF GIG   + L +      VE +++SE+   +    +      L      G++ 
Sbjct: 197 LRVLSLFDGIGTGLVALRKLG--IEVEVYYASEVLTAAATVSRTRLGGVLHHIGSVGEVT 254

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           + + ++I    +L+ G PC  FS
Sbjct: 255 QQRLEEISPIHLLIGGSPCNDFS 277


>gi|110740122|dbj|BAF01962.1| DNA (cytosine-5)-methyltransferase [Arabidopsis thaliana]
          Length = 603

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            D+F G GG+   L++       +  ++ E    + + ++ N P + +F           
Sbjct: 165 LDIFAGCGGLSHGLKKAGVS---DAKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAI 221

Query: 54  ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
               GD                + + +   +P     D +  G PCQ FS
Sbjct: 222 MEKGGDQDDCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFS 271


>gi|85709919|ref|ZP_01040984.1| site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
 gi|85688629|gb|EAQ28633.1| site-specific DNA-methyltransferase [Erythrobacter sp. NAP1]
          Length = 356

 Score = 56.7 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCG+G +   L+Q             + +      ++ N  +T    D++K+  ++
Sbjct: 14 VVDLFCGVGALSHGLKQA----GFAIRAGYDTDRRCKFAFETNNDSTFHARDVSKLTAKE 69

Query: 64 IPDH---D---VLLAGFPCQPFS 80
          +  H   D   VL    PCQPFS
Sbjct: 70 VRAHFSGDKPSVLAGCAPCQPFS 92


>gi|10257413|gb|AAG15406.1| cytosine-5 DNA methyltransferase MET1 [Zea mays]
          Length = 784

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            D+F G GG+   L+Q          ++ E    + + +  N P  ++F           
Sbjct: 343 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFNKNHPEAVVFVDNCNVILKAI 399

Query: 54  ----GD----------------IAKIKTQDIP---DHDVLLAGFPCQPFS 80
               GD                + ++   ++P   + + +  G PCQ FS
Sbjct: 400 MDKCGDTDDCVSTSEAAEQAAKLPEVNINNLPVPGEVEFINGGPPCQGFS 449


>gi|46128541|ref|XP_388824.1| hypothetical protein FG08648.1 [Gibberella zeae PH-1]
          Length = 602

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---D--I 56
             + D   G GG+             +  ++ +  P   +TY+ NFP+T +F    D  I
Sbjct: 254 YTMFDSCSGAGGVSRGALMA----GFKIQYAIDKAPEVWETYETNFPDTELFRMPLDEFI 309

Query: 57  AKIKTQDIPDHDVLLAGFPCQPFSQA 82
           A+         D+L    PCQ FS A
Sbjct: 310 AEPNVGH-KRVDILHFSPPCQFFSPA 334


>gi|296814932|ref|XP_002847803.1| DNA methyltransferase Dim-2 [Arthroderma otae CBS 113480]
 gi|238840828|gb|EEQ30490.1| DNA methyltransferase Dim-2 [Arthroderma otae CBS 113480]
          Length = 1099

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  +LF G G     LE+      ++  ++ E +   + TY+AN PN     L  G + 
Sbjct: 639 LKALNLFSGGGTFDRGLEEG---TAIQSKWAVEWSLPQMLTYRANHPNGKDLKLFCGSVN 695

Query: 58  K-----IKTQD------IPDHDVLLAGFPCQPFSQA 82
                 I+  +      I +  ++ AG PCQ +  A
Sbjct: 696 DYLFQAIQGNENEYIARIGEVQIISAGSPCQGYCSA 731


>gi|303290208|ref|XP_003064391.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453989|gb|EEH51296.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1005

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          LK+  LF G G +   L Q  +    E    +E +P + +   A F       D A ++ 
Sbjct: 11 LKVASLFSGCGVLDYGLTQAGH----EIVLQTESDPDAREVLAARFQGICQPTDPATVEC 66

Query: 62 QDIPDHDVLLAGFPC 76
             PD DVL A   C
Sbjct: 67 LP-PDADVLAASVVC 80


>gi|170088424|ref|XP_001875435.1| C5-DNA-methyltransferase [Laccaria bicolor S238N-H82]
 gi|164650635|gb|EDR14876.1| C5-DNA-methyltransferase [Laccaria bicolor S238N-H82]
          Length = 1309

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 48/122 (39%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ-----------------ANFP 48
           +LF G GG+ L ++ +     VE  ++ E +P + KTY+                  N P
Sbjct: 798 ELFSGAGGLGLGIDMSGF---VETKYAVEFSPSAAKTYKCRETYFLCIFYAYLFTRTNNP 854

Query: 49  NTLIFG-D--------IAKIKTQDIPD-------------------HDVLLAGFPCQPFS 80
           + L++  D        +AK   ++ P                     D +  G PCQ FS
Sbjct: 855 DVLVYNQDSSTLLQQALAKDNGKNPPPLLSKDGKTHCPEMPQKGCQVDFIFGGPPCQSFS 914

Query: 81  QA 82
            A
Sbjct: 915 LA 916


>gi|227431296|ref|ZP_03913349.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
 gi|227352889|gb|EEJ43062.1| DNA (cytosine-5-)-methyltransferase [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
          Length = 367

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 2  LKITDLFC--GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDI-- 56
          +    LF   GIG      E   +   V    ++E+ P   + Y+  +P+  ++ GDI  
Sbjct: 6  MNGMSLFASSGIG------EYYLDRAGVNVVVANELIPKRGELYRKIYPHHKMVIGDILD 59

Query: 57 ----AKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
              ++I    I +  D ++A  PCQ  S AG
Sbjct: 60 ENVFSEISRTAIENNVDFMIASPPCQGISVAG 91


>gi|222624499|gb|EEE58631.1| hypothetical protein OsJ_09996 [Oryza sativa Japonica Group]
          Length = 1033

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + DL+ G G    G+ L     F+  N+E  ++ +IN Y+    + N P    +  +   
Sbjct: 455 LLDLYSGCGAMSTGLCLGF--AFSGINLETRWAVDINKYACACLKHNHP----YSQVRNE 508

Query: 60  KTQDI 64
           KT+D 
Sbjct: 509 KTEDF 513



 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 627 VDVICGGPPCQGIS 640


>gi|24421681|gb|AAN60988.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa
           Japonica Group]
 gi|108706955|gb|ABF94750.1| C-5 cytosine-specific DNA methylase family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 1761

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + DL+ G G    G+ L     F+  N+E  ++ +IN Y+    + N P    +  +   
Sbjct: 455 LLDLYSGCGAMSTGLCLGF--AFSGINLETRWAVDINKYACACLKHNHP----YSQVRNE 508

Query: 60  KTQDI 64
           KT+D 
Sbjct: 509 KTEDF 513



 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 627 VDVICGGPPCQGIS 640


>gi|190571760|ref|YP_001966439.1| M1.LlaJI [Lactococcus lactis]
 gi|46487639|gb|AAS99177.1| M1.LlaJI [Lactococcus lactis]
          Length = 465

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
           +    LF  IG      E       ++   ++E+       YQ  +P   +I GDI    
Sbjct: 91  INALSLFANIG----VAEAYLEDIGIDVVVANELEERRAILYQKIYPKSHMICGDITDKS 146

Query: 61  TQDIPD-------HDVLLAGFPCQPFSQAG 83
            +D           D+++A  PCQ  S AG
Sbjct: 147 IEDKIIKESKEKKVDLVMATPPCQGMSTAG 176


>gi|254787981|ref|YP_003075410.1| DNA-methyltransferase [Teredinibacter turnerae T7901]
 gi|237687098|gb|ACR14362.1| DNA-methyltransferase [Teredinibacter turnerae T7901]
          Length = 380

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 32/105 (30%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI---FGD--IA 57
           K+   F G G +    E+       E  F +EI    +  Y+    N +    + D  I 
Sbjct: 5   KVFSFFSGSGFLDFGFEKA----GFEIVFVNEIFKPFLDAYKYTRNNKIPEFGYSDTCIE 60

Query: 58  KIKTQDIPDHDVL-------------------LAGFPCQPFSQAG 83
            I   +    DV+                   + G PC  FS AG
Sbjct: 61  SILESE----DVIETLKSNLRKCKRNGFHTGFIGGPPCPDFSNAG 101


>gi|302918673|ref|XP_003052704.1| hypothetical protein NECHADRAFT_35564 [Nectria haematococca mpVI
           77-13-4]
 gi|256733644|gb|EEU46991.1| hypothetical protein NECHADRAFT_35564 [Nectria haematococca mpVI
           77-13-4]
          Length = 614

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 7   LF---CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           LF    G GG+             +  ++ +  P    TY+ NFP+T +F    K+   +
Sbjct: 253 LFDSCSGAGGVSRGALMA----GFKIQYAIDKAPEVWDTYETNFPDTHLF----KMSLDE 304

Query: 64  IPDH-------DVLLAGFPCQPFSQA 82
                      DVL    PCQ FS A
Sbjct: 305 FLSFDNQHMRVDVLHFSPPCQFFSPA 330


>gi|221119972|ref|XP_002165825.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 919

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIK 60
           L++  LF G+    L L +     ++  + +SEI+P ++K  + +        GD+ KI 
Sbjct: 624 LRVLSLFDGLSTGYLALSELG--LDILSYHASEIDPLAIKVSKVHHSMRVEQIGDVQKIT 681

Query: 61  TQDIPD---HDVLLAGFPCQPFSQA 82
            QDI +    D+++ G PC   S A
Sbjct: 682 KQDIENWGPFDLVIGGSPCDELSIA 706


>gi|307330114|ref|ZP_07609264.1| C-5 cytosine-specific DNA methylase [Streptomyces violaceusniger
          Tu 4113]
 gi|306884257|gb|EFN15293.1| C-5 cytosine-specific DNA methylase [Streptomyces violaceusniger
          Tu 4113]
          Length = 366

 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 23 NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  N    +  E           +FP+    G++  +    +   D+L AGFPCQ  S A
Sbjct: 5  HVFNARTVWHCENAAAPAAVLAHHFPDVPNLGNLKAVDFTGVEGVDILAAGFPCQDVSIA 64

Query: 83 G 83
          G
Sbjct: 65 G 65


>gi|328947445|ref|YP_004364782.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
 gi|328447769|gb|AEB13485.1| DNA-cytosine methyltransferase [Treponema succinifaciens DSM
          2489]
          Length = 445

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD---I-AKI 59
          +  +  GI          +   N +  + SEI  +     +  +PN    GD   I  KI
Sbjct: 6  VGSICSGI----EAASVAWKDFNFDFKWFSEIAEFQSNFLRIKYPNIKNLGDMNLIGKKI 61

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           T +I   D++  G PCQ FS AG
Sbjct: 62 ATAEIDSPDLICGGTPCQAFSLAG 85


>gi|117307345|dbj|BAF36443.1| DNA methyltransferase type 1 [Nicotiana tabacum]
          Length = 1558

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++      +  ++ E    +   ++ N P   +F           
Sbjct: 1123 LDIFAGCGGLSEGLQRSGVS---DTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVILRAV 1179

Query: 54   ----GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 1180 MQKCGDAEDCISTSEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFS 1229


>gi|209550032|ref|YP_002281949.1| C-5 cytosine-specific DNA methylase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209535788|gb|ACI55723.1| C-5 cytosine-specific DNA methylase [Rhizobium leguminosarum bv.
          trifolii WSM2304]
          Length = 646

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
          +K+ DL CG GG     ++        +E    +   P ++ T+Q NFP    +  DIA 
Sbjct: 5  IKVADLLCGAGGSSAGAKRALEEMGLEMELVCVNHW-PTAIDTHQRNFPEARHYIQDIAT 63

Query: 59 IKTQDI-PD--HDVLLAGFPCQPFSQA 82
          ++   + P+   D+L+A   C   S A
Sbjct: 64 VRPHILVPEGYLDLLMASPTCTHHSVA 90


>gi|153870382|ref|ZP_01999795.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
 gi|152073154|gb|EDN70207.1| C-5 cytosine-specific DNA methylase [Beggiatoa sp. PS]
          Length = 349

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP- 65
           FCGIGG    +        +      +I+      ++ N  +  +  DIAK+    +  
Sbjct: 4  FFCGIGGFSYGI----YKSGLRIDAGVDIDNSCQYAFETNCKSKFLCEDIAKLTGTRVNA 59

Query: 66 -----DHDVLLAGFPCQPFS 80
               D  VL+   PCQPFS
Sbjct: 60 LYTKNDIKVLVGCAPCQPFS 79


>gi|218905512|ref|YP_002453346.1| modification methylase ScrFIB [Bacillus cereus AH820]
 gi|218536933|gb|ACK89331.1| modification methylase ScrFIB [Bacillus cereus AH820]
          Length = 324

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M+KI +LF GIG  R  L       + +     E     VK Y A + +     D+    
Sbjct: 1  MIKILELFGGIGAPRKALVNLG--IDHKAIDYVEWQANRVKAYNALYDHLHKPQDVRGWN 58

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
                 D+L+ G PCQ  S+A
Sbjct: 59 L----KPDILVHGSPCQDNSRA 76


>gi|320031459|gb|EFW13422.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 1040

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  +LFCG G     LE+      +   ++ E +   + TY+AN  N     L  G + 
Sbjct: 532 LRALNLFCGGGTFDRGLEEG---TAIRSEWAVEWDLPPMLTYRANHTNPEDVKLFRGSVD 588

Query: 58  KIKTQDIP-----------DHDVLLAGFPCQPFSQA 82
                 I              + + AG PCQ +S A
Sbjct: 589 DFLAVAIRGQGSDLVAKLGQVEFISAGSPCQGYSLA 624


>gi|303310981|ref|XP_003065502.1| DNA (cytosine-5)-methyltransferase, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240105164|gb|EER23357.1| DNA (cytosine-5)-methyltransferase, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1117

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  +LFCG G     LE+      +   ++ E +   + TY+AN  N     L  G + 
Sbjct: 609 LRALNLFCGGGTFDRGLEEG---TAIRSEWAVEWDLPPMLTYRANHTNPEDVKLFRGSVD 665

Query: 58  KIKTQDIP-----------DHDVLLAGFPCQPFSQA 82
                 I              + + AG PCQ +S A
Sbjct: 666 DFLAVAIRGQGSDLVAKLGQVEFISAGSPCQGYSLA 701


>gi|119194775|ref|XP_001247991.1| hypothetical protein CIMG_01762 [Coccidioides immitis RS]
          Length = 1040

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  +LFCG G     LE+      +   ++ E +   + TY+AN  N     L  G + 
Sbjct: 532 LRALNLFCGGGTFDRGLEEG---TAIRSEWAVEWDLPPMLTYRANHTNPEEVKLFRGSVD 588

Query: 58  KIKTQDIP-----------DHDVLLAGFPCQPFSQA 82
                 I              + + AG PCQ +S A
Sbjct: 589 DFLAVAIRGQRSDLVAKLGQVEFISAGSPCQGYSLA 624


>gi|255568838|ref|XP_002525390.1| conserved hypothetical protein [Ricinus communis]
 gi|223535353|gb|EEF37028.1| conserved hypothetical protein [Ricinus communis]
          Length = 479

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
           + +  LF GIGG  + L +     N     S EI+  +    ++ +  T      +  GD
Sbjct: 340 ITVLSLFSGIGGAEVALHRLGIPLNS--VVSVEISEVNRNIPRSWWEQTNQKGYLIEIGD 397

Query: 56  IAKIKTQDIPD-------HDVLLAGFPC 76
           + ++    I          D+++ G PC
Sbjct: 398 VREVDGDSIKRWIKLFGGFDLVIGGSPC 425


>gi|7288140|dbj|BAA92852.1| DNA (cytosine-5-)-methyltransferase [Nicotiana tabacum]
 gi|56130955|gb|AAV80209.1| cytosine-5-methyltransferase [Nicotiana tabacum]
          Length = 1556

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++      +  ++ E    +   ++ N P   +F           
Sbjct: 1121 LDIFAGCGGLSEGLQRSGVS---DTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVILRAV 1177

Query: 54   ----GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 1178 MQKCGDAENCISTSEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFS 1227


>gi|260439066|ref|ZP_05792882.1| C-5 cytosine-specific DNA methylase family protein [Butyrivibrio
          crossotus DSM 2876]
 gi|292808523|gb|EFF67728.1| C-5 cytosine-specific DNA methylase family protein [Butyrivibrio
          crossotus DSM 2876]
          Length = 428

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 2  LKITDLFC--GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
               LF   GIG   L L    +   +    + EI    +  ++ N PNT  F GDI K
Sbjct: 5  YNAISLFSSSGIG--DLGL----HANGINTVTACEIIEERMALFKNNNPNTKCFCGDIWK 58

Query: 59 IKTQDIPDHD--------VLLAGFPCQPFSQAG 83
          ++   I D++        ++LA  PCQ  S  G
Sbjct: 59 LEKDIIDDYNERFSENPFLILATPPCQGMSPNG 91


>gi|159481068|ref|XP_001698604.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158282344|gb|EDP08097.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 2204

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 37/109 (33%)

Query: 6    DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD---------- 55
            D+F G GG+     Q       E  ++ E +  +   ++ N P+T +F D          
Sbjct: 1730 DIFAGCGGLSEGFHQAGVA---ESRWAIEYDREAADAFKLNNPHTTVFCDNCNVLLRAAM 1786

Query: 56   ------------------IAKIKTQ---DIP---DHDVLLAGFPCQPFS 80
                                ++  Q   D+P      +++ G PCQ +S
Sbjct: 1787 VKAGLEADCVSDPAAVEAARRLDPQVVADLPAPGAVGLMMGGPPCQGYS 1835


>gi|297739809|emb|CBI29991.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + + DL+ G G +   L    +   ++    ++ +INP++ ++ + N P T     +   
Sbjct: 252 MTLLDLYSGCGAMSTGLCLGASLSGLKLVTRWAVDINPHACESLKLNHPETE----VRNE 307

Query: 60  KTQDIPDHDVL--LAGFPCQPFSQAG 83
             +D     +L   A   C+ FS  G
Sbjct: 308 AAEDFLS--LLKEWATL-CEDFSLLG 330



 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 66  DHDVLLAGFPCQPFS 80
           D D +  G PCQ  S
Sbjct: 433 DVDFICGGPPCQGVS 447


>gi|225441510|ref|XP_002275932.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 829

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + + DL+ G G +   L    +   ++    ++ +INP++ ++ + N P T     +   
Sbjct: 254 MTLLDLYSGCGAMSTGLCLGASLSGLKLVTRWAVDINPHACESLKLNHPETE----VRNE 309

Query: 60  KTQDIPDHDVL--LAGFPCQPFSQAG 83
             +D     +L   A   C+ FS  G
Sbjct: 310 AAEDFLS--LLKEWATL-CEDFSLLG 332



 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 66  DHDVLLAGFPCQPFS 80
           D D +  G PCQ  S
Sbjct: 435 DVDFICGGPPCQGVS 449


>gi|119714083|ref|YP_919225.1| C-5 cytosine-specific DNA methylase [Nocardioides sp. JS614]
 gi|119525992|gb|ABL79362.1| C-5 cytosine-specific DNA methylase [Nocardioides sp. JS614]
          Length = 615

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 15/86 (17%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI------ 59
           DLF G GG+   +E+           ++  N Y VK ++AN P+   +  IA +      
Sbjct: 23  DLFSGFGGLTQGIERAGFTA---IVAAN-HNEYKVKVHEANHPHVEHW--IADLVDPDSS 76

Query: 60  ---KTQDIPDHDVLLAGFPCQPFSQA 82
                +++P  D+L AG  C   S A
Sbjct: 77  DYHSVRELPPVDLLAAGVSCVNHSPA 102


>gi|313113251|ref|ZP_07798865.1| hypothetical protein HMPREF9436_00710 [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|310624430|gb|EFQ07771.1| hypothetical protein HMPREF9436_00710 [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 66

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVPRFQDITTVTK 58

Query: 62 QDI 64
          +  
Sbjct: 59 EAF 61


>gi|108705798|gb|ABF93593.1| DNA cytosine methyltransferase Zmet3, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 507

 Score = 56.3 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 384 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 441

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 442 RHLTTERIETFIRRFGGFDLVIGGSPC 468


>gi|119173265|ref|XP_001239116.1| hypothetical protein CIMG_10138 [Coccidioides immitis RS]
          Length = 626

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
               D FCG GG+     Q   H      +  +  P ++ TY+ NF   +  G+  ++  
Sbjct: 328 YTFGDGFCGAGGVSRGALQAGLH----VRWGFDKCPKAMDTYRLNFRTAV--GETCEVVH 381

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
               +T+DI   D++    PCQ FS A
Sbjct: 382 FLTNETKDI-MVDIMHFSPPCQTFSPA 407


>gi|154302575|ref|XP_001551697.1| hypothetical protein BC1G_09864 [Botryotinia fuckeliana B05.10]
 gi|150855353|gb|EDN30545.1| hypothetical protein BC1G_09864 [Botryotinia fuckeliana B05.10]
          Length = 1126

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF--GDIAKI 59
               D FCG GG             +   +  + + ++  T++ NFP    +       +
Sbjct: 731 YTYGDAFCGAGGTTRGAVMA----GLRVKWGFDFDQHACTTWRLNFPGATCYEMSSERFV 786

Query: 60  K-------TQDIP---DHDVLLAGFPCQPFSQA 82
                   + +IP     D+L    PCQ FS A
Sbjct: 787 SLATPSPCSSNIPNDVKVDILHLSPPCQYFSPA 819


>gi|169977306|emb|CAQ18900.1| DNA (cytosine-5) methyltransferase [Nicotiana sylvestris]
          Length = 1558

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++      +  ++ E    +   ++ N P   +F           
Sbjct: 1123 LDIFAGCGGLSEGLQRSGVS---DTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVFLRVV 1179

Query: 54   ----GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 1180 MQKCGDAEDCISTPEASELAAAMDESELNSLPLPGQVDFINGGPPCQGFS 1229


>gi|226088550|dbj|BAH37020.1| chromomethylase OsMET2b [Oryza sativa Japonica Group]
          Length = 690

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + DL+ G G    G+ L     F+  N+E  ++ +IN Y+    + N P    +  +   
Sbjct: 173 LLDLYSGCGAMSTGLCLGF--AFSGINLETRWAVDINKYACACLKHNHP----YSQVRNE 226

Query: 60  KTQDI 64
           KT+D 
Sbjct: 227 KTEDF 231



 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 345 VDVICGGPPCQGIS 358


>gi|225463169|ref|XP_002267284.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1535

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q+         ++ E    +   ++ N P + +F           
Sbjct: 1100 LDIFAGCGGLSEGLQQSGVSV---TKWAIEYEEPAGDAFKLNHPESSMFINNCNVILRAV 1156

Query: 54   ----GD-------------IAKIKTQDIPD------HDVLLAGFPCQPFS 80
                GD                +  +DI +       D +  G PCQ FS
Sbjct: 1157 MEKCGDADDCLSTSEAAELATSLGEKDINNLPLPGQVDFINGGPPCQGFS 1206


>gi|224144433|ref|XP_002325288.1| DNA methyltransferase [Populus trichocarpa]
 gi|222862163|gb|EEE99669.1| DNA methyltransferase [Populus trichocarpa]
          Length = 1549

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + ++ N   +L+F           
Sbjct: 1115 LDIFAGCGGLSEGLQQAGVST---TKWAIEYEEPAGEAFKLNHAESLMFINNCNVILRAV 1171

Query: 54   ----GD----IAK--------------IKTQDIP-DHDVLLAGFPCQPFS 80
                GD    I+               I    +P   D +  G PCQ FS
Sbjct: 1172 MERCGDADDCISTSEAAKMASSLDAKVIDGLPLPGQVDFINGGPPCQGFS 1221


>gi|212526390|ref|XP_002143352.1| C-5 cytosine methyltransferase DmtA [Penicillium marneffei ATCC
           18224]
 gi|210072750|gb|EEA26837.1| C-5 cytosine methyltransferase DmtA [Penicillium marneffei ATCC
           18224]
          Length = 604

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAK---I 59
             D FCG GG+ +   +      +   +  +I+  + +T++ NF ++  F  D      +
Sbjct: 300 FGDAFCGAGGVSVGAWKA----GLRVKYGIDIDTAACETWRTNFVHSSCFHADFYSWLSL 355

Query: 60  KTQDIPDHDVLLAGFPCQPFSQA 82
           + +D    D+  +  PCQPFS A
Sbjct: 356 QDED-AQVDISHSSPPCQPFSPA 377


>gi|297807559|ref|XP_002871663.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317500|gb|EFH47922.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 593

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           +K+  LF GIGG  + L +      +    S EI+  +    ++ +  T   G      D
Sbjct: 467 IKVLSLFTGIGGGEVALHRL--QIRMNVVVSVEISEANRNILRSFWEQTNQKGILREFKD 524

Query: 56  IAKIKTQDIPD-------HDVLLAGFPC 76
           + K+    I          D+++ G PC
Sbjct: 525 VEKLDDNTIEQLMDEYGGFDLVIGGSPC 552


>gi|319957554|ref|YP_004168817.1| c-5 cytosine-specific DNA methylase [Nitratifractor salsuginis
          DSM 16511]
 gi|319419958|gb|ADV47068.1| C-5 cytosine-specific DNA methylase [Nitratifractor salsuginis
          DSM 16511]
          Length = 338

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 27 VECFFSSEINPYSVKTY--QANFPN---TLIFGDIAKIKTQDIPDH-DVLLAGFPCQPFS 80
               + EI  Y+ +    +    +     I+ D+     +      DV+  GFPCQ  S
Sbjct: 22 WHTVCAVEIEEYAREVLLQRQRTGDLESFPIWDDVRSFDGKPWKGVVDVITGGFPCQDIS 81

Query: 81 QAG 83
           AG
Sbjct: 82 IAG 84


>gi|134295263|ref|YP_001118998.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis
          G4]
 gi|134138420|gb|ABO54163.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis
          G4]
          Length = 232

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 2  LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY-----QANFPNTLIFG 54
          +++   +LF G+GG  L               + E NPY ++       + + P   I+ 
Sbjct: 1  MRVNELELFAGVGGGIL----AAKLLGHRTVCAVERNPYRIRRLMQRQNEGHLPPFPIWD 56

Query: 55 DIAKIKTQDIPD-HDVLLAGFPCQPFSQA 82
          D+            D +  GFPCQ +S A
Sbjct: 57 DVRTFDGLPWRGIVDCVSGGFPCQAYSSA 85


>gi|315607602|ref|ZP_07882597.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250785|gb|EFU30779.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 531

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC---FFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
             DLFCG GG    +E        +C         +  ++ ++QAN P+TL F  DI  +
Sbjct: 8   YIDLFCGAGGTSTGVEHA-KLDGTKCARVVACVNHDANAIASHQANHPDTLHFTEDIRTL 66

Query: 60  KTQDIPDH------------DVLLAGFPCQPFSQA 82
               +  H             VL A   C  FS+A
Sbjct: 67  DLTALTAHLNRMRMKYPSALVVLWASLECTNFSKA 101


>gi|228950284|ref|ZP_04112461.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809446|gb|EEM55890.1| Cytosine-specific methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 346

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           L +   F   GG        +         + +I+P  V  YQ N      +  DI + K
Sbjct: 20  LNVFSCFA-CGG---GSTMGYKLAGCTVLGNCDIDPQMVALYQNNHKPRYSYCMDIREFK 75

Query: 61  TQDIPDH---------DVLLAGFPCQPFSQAG 83
             DIP+          D+L    PC  FS AG
Sbjct: 76  --DIPNAKLPAELFNLDILDGSPPCSSFSTAG 105


>gi|332288285|ref|YP_004419137.1| C-5 cytosine-specific DNA methylase [Gallibacterium anatis
          UMN179]
 gi|330431181|gb|AEC16240.1| C-5 cytosine-specific DNA methylase [Gallibacterium anatis
          UMN179]
          Length = 349

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M++  DLFCG GG+   L++      V+     +I       ++ N   + +  D++ + 
Sbjct: 1  MIEAVDLFCGAGGLTAGLQKA----GVKVKAGYDIEEACRYPFEFNNNASFVNKDVSLVS 56

Query: 61 TQDI------PDHDVLLAGFPCQPFS 80
            ++          +L    PCQPFS
Sbjct: 57 GTEVMQWYNQKAIRLLAGCAPCQPFS 82


>gi|303324183|ref|XP_003072079.1| C-5 cytosine methyltransferase DmtA, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111789|gb|EER29934.1| C-5 cytosine methyltransferase DmtA, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 535

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
               D FCG GG+     Q   H      +  +  P ++ TY+ NF   +  G+  ++  
Sbjct: 271 YTFGDGFCGAGGVSRGALQAGLH----VRWGFDKCPKAMDTYRLNFRTAV--GETCEVVH 324

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
               +T+DI   D++    PCQ FS A
Sbjct: 325 FLTNETKDI-MVDIMHFSPPCQTFSPA 350


>gi|115450235|ref|NP_001048718.1| Os03g0110800 [Oryza sativa Japonica Group]
 gi|108705795|gb|ABF93590.1| DNA cytosine methyltransferase Zmet3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113547189|dbj|BAF10632.1| Os03g0110800 [Oryza sativa Japonica Group]
          Length = 597

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 474 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 531

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 532 RHLTTERIETFIRRFGGFDLVIGGSPC 558


>gi|300787999|ref|YP_003768290.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
          U32]
 gi|299797513|gb|ADJ47888.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
          U32]
          Length = 541

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPD 66
          F G GG    +      R      ++  NP ++ T+  NFP    + GDIAK      P 
Sbjct: 9  FAGFGGDTTGVLAVPGTRG--VLGAN-HNPDAIATHALNFPGMDHYEGDIAKADIGTFPR 65

Query: 67 HDVLLAGFPCQPFSQA 82
           D   A   C P++ A
Sbjct: 66 VDFFWASPSCPPWTDA 81


>gi|296084835|emb|CBI27717.3| unnamed protein product [Vitis vinifera]
          Length = 1417

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q+         ++ E    +   ++ N P + +F           
Sbjct: 987  LDIFAGCGGLSEGLQQSGVSV---TKWAIEYEEPAGDAFKLNHPESSMFINNCNVILRAV 1043

Query: 54   ----GD-------------IAKIKTQDIPD------HDVLLAGFPCQPFS 80
                GD                +  +DI +       D +  G PCQ FS
Sbjct: 1044 MEKCGDADDCLSTSEAAELATSLGEKDINNLPLPGQVDFINGGPPCQGFS 1093


>gi|108705796|gb|ABF93591.1| DNA cytosine methyltransferase Zmet3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|283379278|dbj|BAI66065.1| DNA methyltransferase [Oryza sativa Japonica Group]
          Length = 598

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 475 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 532

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 533 RHLTTERIETFIRRFGGFDLVIGGSPC 559


>gi|182438469|ref|YP_001826188.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178466985|dbj|BAG21505.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
          subsp. griseus NBRC 13350]
          Length = 317

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L+  D+  G GG+ L  E+       E     +    + +T + N P   ++  D+    
Sbjct: 4  LRFVDVCAGAGGLALGFEKA----GFEPVLLLDKKRIACETLRMNRPTWNVLEADLLDFD 59

Query: 61 TQD---IPDHDVLLAGFP 75
            +     D D+L AG P
Sbjct: 60 PAEHRQTYDVDLLSAGLP 77


>gi|167462144|ref|ZP_02327233.1| hypothetical protein Plarl_06240 [Paenibacillus larvae subsp.
          larvae BRL-230010]
 gi|322382466|ref|ZP_08056361.1| hypothetical protein PL1_2405 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321153579|gb|EFX45968.1| hypothetical protein PL1_2405 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 232

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--K 60
          K+ DLFC  GG              E     +I P      Q N+P   I+ D  +I   
Sbjct: 4  KLLDLFCKAGGCSAGYASA----GFEVIG-VDIEP------QPNYPYEFIWADAFEILKD 52

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + I + DV+ A  PCQ  S+A
Sbjct: 53 HELIDEFDVIHASPPCQAHSKA 74


>gi|168032180|ref|XP_001768597.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680096|gb|EDQ66535.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 383

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-------IFG 54
           +K+  LF GIGG  + L +      +    S EI+  + +  +A +  +         + 
Sbjct: 254 IKVLSLFSGIGGAEVALHKMGMK--LLVVVSVEIDDGTRRCLEAWWATSKQTGVLNQNYH 311

Query: 55  DIAKIKTQDIPD-------HDVLLAGFPCQPFS 80
           +I  +    I +        D+++ G PC   S
Sbjct: 312 NIKDLGRAQISELVNKYGGFDLIVGGTPCNNLS 344


>gi|298377907|ref|ZP_06987856.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_19]
 gi|298265151|gb|EFI06815.1| DNA (cytosine-5-)-methyltransferase [Bacteroides sp. 3_1_19]
          Length = 409

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 43/122 (35%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNT------- 50
               DLF G GG+      +            E     V+T +      +  T       
Sbjct: 6   YTFIDLFAGCGGLSEGFMSSGYFSG---LAHVEWELPMVQTLRNRLVQKWNETEEDAKKK 62

Query: 51  LIFGDIAKIKT--------------------------QDI---PDHDVLLAGFPCQPFSQ 81
           +I  DI K                             ++I      D ++ G PCQ +S 
Sbjct: 63  VILFDIQKTDELISGNWSEESIAQYGENNDNSIQKGLKEIINKESVDFIIGGPPCQAYSI 122

Query: 82  AG 83
            G
Sbjct: 123 HG 124


>gi|258570503|ref|XP_002544055.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237904325|gb|EEP78726.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 571

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
               D FCG GG+     Q   +      +  +    ++ TY+ NF   +  G+  ++  
Sbjct: 273 YTFGDGFCGAGGVSRGALQAGLY----VRWGFDKCHKAMDTYRLNFRTAV--GETCEVAH 326

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
                 +DI   D+L    PCQ FS A
Sbjct: 327 FLTNDAKDI-MVDILHFSPPCQTFSSA 352


>gi|255072031|ref|XP_002499690.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226514952|gb|ACO60948.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 401

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 15/95 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNT--------- 50
           K+ + + G+G +R  LE+        +V    S + +  +   Y AN+P+          
Sbjct: 60  KMVEFYAGMGTMRWSLERALESDMGASVTALASIDNSEVANAVYLANYPDENASGVLMRR 119

Query: 51  --LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                  +  +  +     DV     PCQP+++ G
Sbjct: 120 NVEHLSSVETLDAR-FGGADVWTLSPPCQPYTRKG 153


>gi|225452416|ref|XP_002273972.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 603

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAK 58
           + +  LF GIGG  + L +      ++   + EI+  +    ++ +  T   G   DIA 
Sbjct: 478 ITLLSLFSGIGGAEIALHRLG--IPLKNVVAVEISETNRNILRSWWEQTNQRGTLVDIAD 535

Query: 59  IK----------TQDIPDHDVLLAGFPC 76
           ++                 D+++ G PC
Sbjct: 536 VQQLNGDRLEQLIHTFGGFDLIVGGSPC 563


>gi|328857943|gb|EGG07057.1| hypothetical protein MELLADRAFT_85954 [Melampsora larici-populina
           98AG31]
          Length = 883

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 32/110 (29%)

Query: 2   LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAK 58
           +K+   +LF GIG   L   +          F  + +  + +T   NFP  T+   D+ +
Sbjct: 357 MKLSHLELFGGIGSFSLGFSEHGLTDQKRTVF-IDWSVPACETASINFPKSTIFCADVNE 415

Query: 59  IK-------------------------TQDIP---DHDVLLAGFPCQPFS 80
           I                             +P   D D++ AGFPC   S
Sbjct: 416 ILCLMITGKTRQGKSSVRDLRTGLQIFPDQLPKPGDFDIITAGFPCGSHS 465


>gi|299145766|ref|ZP_07038834.1| putative C-5 cytosine-specific DNA methylase [Bacteroides sp.
          3_1_23]
 gi|298516257|gb|EFI40138.1| putative C-5 cytosine-specific DNA methylase [Bacteroides sp.
          3_1_23]
          Length = 545

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
          +K    DLFCG GG    +E+    N +  +       +  ++ ++ AN P+ L F  DI
Sbjct: 1  MKLLYIDLFCGAGGTSTGVEKARLENEQCAKVIACVNHDKNAIASHAANHPDALHFTEDI 60

Query: 57 AKIKTQ-----------DIPDH-DVLLAGFPCQPFSQA 82
            +              + P+   VL A   C  FS+A
Sbjct: 61 RTLNLSPLVSHLQKCRAEYPEALIVLWASLECTNFSKA 98


>gi|301321463|gb|ADK70106.1| DNA (cytosine-5-)-methyltransferase [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 493

 Score = 55.9 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 32 SSEINPYSVKTYQANFP-NTLIFGDIAK-------IKTQDIPDHDVLLAGFPCQPFSQAG 83
          + + N  +++T++ N P + +I GDI         IK       ++++ G PCQ FS  G
Sbjct: 3  AVDFNKSALETFKHNMPWSDIICGDITNESIRQEIIKRATKLKVNMIIGGPPCQGFSNKG 62


>gi|295646363|gb|ADG23067.1| DNA (cytosine-5)-methyltransferase 2 [Gadus morhua]
          Length = 139

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 32 SSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPD--HDVLLAGFPCQPFSQAG 83
          + ++N  + + Y+ NFP+T ++   I  I  ++      D++L   PCQPF++ G
Sbjct: 2  AIDVNTTANEIYRHNFPDTPLWPKTIEGISLEEFNKLSFDMILMSPPCQPFTRIG 56


>gi|21226380|ref|NP_632302.1| DNA-cytosine methyltransferase [Methanosarcina mazei Go1]
 gi|20904635|gb|AAM29974.1| DNA-cytosine methyltransferase [Methanosarcina mazei Go1]
          Length = 423

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 54/132 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY--QANF------PNTLIF 53
             + D+F G GG+     Q    +  +     E N ++  +   +A +       N  I+
Sbjct: 5   YTVLDMFSGAGGLTEGFFQ----QGFKFVSHIEKNCHARNSLETRAIYHSLKDSSNERIY 60

Query: 54  GD-----------IAKIKT----------------------QDIPDH---------DVLL 71
            D           I K K                       ++I +H         DV++
Sbjct: 61  RDYISGNLNRDEFIHKFKELELTPAGLLQGEVTESNETTMIKEIKEHLKVIDSDSVDVVI 120

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S AG
Sbjct: 121 GGPPCQAYSVAG 132


>gi|322505075|emb|CAM39116.2| modification methylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 843

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + G+I +I     P HDVL  GFPCQ F++AG
Sbjct: 437 PLVGNITEIPNAFFPTHDVLTGGFPCQSFAKAG 469



 Score = 49.4 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
           +   ++LFCGIG  R  LE+          F+ +  P +   Y  N 
Sbjct: 327 LFTFSELFCGIGMFRSGLERVGGRA----AFAVDFAPPAQIVYALNH 369


>gi|154338798|ref|XP_001565621.1| modification methylase-like protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 843

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            + G+I +I     P HDVL  GFPCQ F++AG
Sbjct: 437 PLVGNITEIPNAFFPTHDVLTGGFPCQSFAKAG 469



 Score = 49.4 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
           +   ++LFCGIG  R  LE+          F+ +  P +   Y  N 
Sbjct: 327 LFTFSELFCGIGMFRSGLERVGGRA----AFAVDFAPPAQIVYALNH 369


>gi|108705797|gb|ABF93592.1| DNA cytosine methyltransferase Zmet3, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 626

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 503 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 560

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 561 RHLTTERIETFIRRFGGFDLVIGGSPC 587


>gi|312199630|ref|YP_004019691.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
 gi|311230966|gb|ADP83821.1| C-5 cytosine-specific DNA methylase [Frankia sp. EuI1c]
          Length = 545

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQD 63
           DLFCG GG    L             ++   P +V+ +  N P T     DI+    + 
Sbjct: 9  LDLFCGAGGSSTGLVGAGVRVTH---AANHW-PLAVEVHGLNHPETEHDCADISGTDPRR 64

Query: 64 IPDHDVLLAGFPCQPFSQA 82
           P  D+L A   C   S A
Sbjct: 65 YPSTDILWASPECTNQSVA 83


>gi|320037073|gb|EFW19011.1| hypothetical protein CPSG_04557 [Coccidioides posadasii str.
           Silveira]
          Length = 607

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI-- 59
               D FCG GG+     Q   H      +  +  P ++ TY+ NF   +  G+  ++  
Sbjct: 271 YTFGDGFCGAGGVSRGALQAGLH----VRWGFDKCPKAMDTYRLNFRTAV--GETCEVVH 324

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
               +T+DI   D++    PCQ FS A
Sbjct: 325 FLTNETKDI-MVDIMHFSPPCQTFSPA 350


>gi|307149806|ref|YP_003890849.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
 gi|306986606|gb|ADN18484.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7822]
          Length = 645

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS-------VKTYQANFPNTLIFGDIAKI 59
           LF G G   +          ++  +  E +P S        + Y+ N    LI   +  +
Sbjct: 24  LFSGGGLFDVGAMLA----GIKPVWGVEFDPNSPSLSSAIAECYEKNLGRHLIKKPVQDV 79

Query: 60  KTQDIPDHDVLLAGFPCQPFSQ 81
               +   D L    PCQ FS 
Sbjct: 80  DFSSLVPPDFLHCSPPCQKFSL 101


>gi|265763529|ref|ZP_06092097.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 2_1_16]
 gi|263256137|gb|EEZ27483.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 2_1_16]
          Length = 545

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
          +K    DLFCG GG    +E+    N +  +       +  ++ ++ AN P+ L F  DI
Sbjct: 1  MKLLYIDLFCGAGGTSTGVEKARLENEQCAKVIACVNHDKNAIASHAANHPDALHFTEDI 60

Query: 57 AKIKTQ-----------DIPDH-DVLLAGFPCQPFSQA 82
            +              + P+   VL A   C  FS+A
Sbjct: 61 RTLNLSPLVSHLQKCRAEYPEALIVLWASLECTNFSKA 98


>gi|332358649|gb|EGJ36472.1| adenine/cytosine DNA methyltransferase [Streptococcus sanguinis
          SK355]
          Length = 387

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 26/101 (25%)

Query: 2  LKITDLFC--GIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGD 55
          +    LF   GIG         F     EC  SSE+    ++  +AN    + +  I GD
Sbjct: 1  MNYISLFSSSGIGC------YGFKEEGFECIASSELIERRLEVQKANNKLKYDDGYILGD 54

Query: 56 IA-KIKTQDI-------------PDHDVLLAGFPCQPFSQA 82
          I  +I  Q++              + DV++   PCQ  S A
Sbjct: 55 ITDEIVKQNLFDAVENFKKRKKQEEVDVIIFTAPCQGMSVA 95


>gi|300782287|ref|YP_003762578.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
          U32]
 gi|299791801|gb|ADJ42176.1| DNA (cytosine-5-)-methyltransferase [Amycolatopsis mediterranei
          U32]
          Length = 541

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPD 66
          F G GG    +             ++  NP ++ T+  NFP    + GDIAK      P 
Sbjct: 9  FAGFGGDATGVLAVPGTHG--VLGAN-HNPDAIATHALNFPGMDHYEGDIAKADIGTFPR 65

Query: 67 HDVLLAGFPCQPFSQA 82
           D   A   C P++ A
Sbjct: 66 VDFFWASPSCPPWTDA 81


>gi|222624058|gb|EEE58190.1| hypothetical protein OsJ_09131 [Oryza sativa Japonica Group]
          Length = 918

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 552 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 609

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 610 RHLTTERIETFIRRFGGFDLVIGGSPC 636


>gi|210134249|ref|YP_002300688.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132217|gb|ACJ07208.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 822

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N    F  + I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINRKCKFDESYISGDIK 62

Query: 58  KIKTQD-----IP---------DHDVLLAGFPCQPFSQA 82
           K +T++     I            D+++A  PCQ  S A
Sbjct: 63  KPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|299141669|ref|ZP_07034805.1| DNA cytosine methyltransferase [Prevotella oris C735]
 gi|298577005|gb|EFI48875.1| DNA cytosine methyltransferase [Prevotella oris C735]
          Length = 531

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC---FFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
             DLFCG GG    +E        +C         +  ++ ++QAN P+TL F  DI  +
Sbjct: 8   YIDLFCGAGGTSTGVEHA-KLDGTKCARVVACVNHDANAIASHQANHPDTLHFTEDIRTL 66

Query: 60  KTQDIPDH------------DVLLAGFPCQPFSQA 82
               +  H             VL A   C  FS+A
Sbjct: 67  DLTGLTAHLNRMRMKYPSALVVLWASLECTNFSKA 101


>gi|327356173|gb|EGE85030.1| cytosine-specific methyltransferase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1233

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  ++F G G     LE+    +N    ++ E +   + TY+AN  N     L  G + 
Sbjct: 658 LRALNIFSGGGSFDRGLEEGGAIKNR---WAVEWSAAPMLTYRANHENPEKVKLFLGSVN 714

Query: 58  KIKTQ-------------DIPDHDVLLAGFPCQPFS 80
               Q              + D +V+ AG PCQ +S
Sbjct: 715 DFLLQALQQKAEAGNLIAKLGDVEVISAGSPCQGYS 750


>gi|261203805|ref|XP_002629116.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis SLH14081]
 gi|239586901|gb|EEQ69544.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis SLH14081]
 gi|239608866|gb|EEQ85853.1| DNA methyltransferase Dim-2 [Ajellomyces dermatitidis ER-3]
          Length = 1233

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  ++F G G     LE+    +N    ++ E +   + TY+AN  N     L  G + 
Sbjct: 658 LRALNIFSGGGSFDRGLEEGGAIKNR---WAVEWSAAPMLTYRANHENPEKVKLFLGSVN 714

Query: 58  KIKTQ-------------DIPDHDVLLAGFPCQPFS 80
               Q              + D +V+ AG PCQ +S
Sbjct: 715 DFLLQALQQKAEAGNLIAKLGDVEVISAGSPCQGYS 750


>gi|304389119|ref|ZP_07371161.1| adenine/cytosine DNA methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304336918|gb|EFM03110.1| adenine/cytosine DNA methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 499

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|300728104|ref|ZP_07061476.1| C-5 cytosine-specific DNA methylase [Prevotella bryantii B14]
 gi|299774618|gb|EFI71238.1| C-5 cytosine-specific DNA methylase [Prevotella bryantii B14]
          Length = 382

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 17/90 (18%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
            LF  +G     +E+   +  V    ++E++    + Y+   PNT +I GDI K    +
Sbjct: 10 LSLFSNVGVAEAGIEK---NNQVSIVLANELDHKRCEFYKCVHPNTKVIEGDITK---DE 63

Query: 64 IPD----------HDVLLAGFPCQPFSQAG 83
          I D           + +LA  PCQ  S+AG
Sbjct: 64 IRDTIVEEAKSLNVNFVLATPPCQGMSEAG 93


>gi|330932388|ref|XP_003303757.1| hypothetical protein PTT_16100 [Pyrenophora teres f. teres 0-1]
 gi|311320036|gb|EFQ88154.1| hypothetical protein PTT_16100 [Pyrenophora teres f. teres 0-1]
          Length = 762

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
             D+FCG GG      Q          +  + +  ++KTY+ N P    F  D     ++
Sbjct: 314 FGDVFCGAGGASQGALQAGYAIG----WGLDSDHTALKTYKLNHPTAQTFKMDAHDFSSK 369

Query: 63  DI----PDHDVLLAGFPCQPFSQA 82
           D+       DVL    PC  +S A
Sbjct: 370 DVCPKRWRVDVLHLSPPCCYWSPA 393


>gi|224077654|ref|XP_002305346.1| DNA methyltransferase [Populus trichocarpa]
 gi|222848310|gb|EEE85857.1| DNA methyltransferase [Populus trichocarpa]
          Length = 1529

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+Q          ++ E    + + ++ N   +L+F           
Sbjct: 1095 LDIFAGCGGLSEGLQQAGVSS---TKWAIEYEEPAGEAFKLNHAGSLMFINNCNVILRAV 1151

Query: 54   ----GD----IAK--------------IKTQDIP-DHDVLLAGFPCQPFS 80
                GD    I+               I    +P   D +  G PCQ FS
Sbjct: 1152 MEKCGDADDCISTSEAGELASSLDAKVIDGLPLPGQVDFINGGPPCQGFS 1201


>gi|290957787|ref|YP_003488969.1| restriction/modification system DNA methylase [Streptomyces
          scabiei 87.22]
 gi|260647313|emb|CBG70418.1| putative restriction/modification system DNA methylase
          [Streptomyces scabiei 87.22]
          Length = 424

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          + I DLF G GG       + +   V      E + ++ KT +A      I  D+A    
Sbjct: 1  MTILDLFAGPGGWS----HSLHVLGVRDVGL-EWDEWACKT-RAAAGQLTIRTDVALYPV 54

Query: 62 QDIPDHDV-LLAGFPCQPFSQAG 83
                 V L+A  PCQ +S AG
Sbjct: 55 WPFLGKTVGLIASPPCQAWSMAG 77


>gi|194706928|gb|ACF87548.1| unknown [Zea mays]
          Length = 334

 Score = 55.5 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          E   + +IN  +   Y+ NF +    G+I  +   D+        L   PCQP+++ G
Sbjct: 8  EVVEAFDINDVANDVYEHNFGHRPCQGNIQTLTASDLDKYKAHAWLLSPPCQPYTRQG 65


>gi|284030140|ref|YP_003380071.1| C-5 cytosine-specific DNA methylase [Kribbella flavida DSM 17836]
 gi|283809433|gb|ADB31272.1| C-5 cytosine-specific DNA methylase [Kribbella flavida DSM 17836]
          Length = 514

 Score = 55.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          L +TDLFCG GG      Q      V    ++     +V+T+ +N P T     D+++++
Sbjct: 3  LTMTDLFCGAGGSSTGAVQV---PGVTVKLAANHWKLAVETHNSNHPGTDHDCADLSQVE 59

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           +  P  +VL A   C   SQA
Sbjct: 60 PRRYPRTNVLWASPECTNHSQA 81


>gi|302419495|ref|XP_003007578.1| RIP defective [Verticillium albo-atrum VaMs.102]
 gi|261353229|gb|EEY15657.1| RIP defective [Verticillium albo-atrum VaMs.102]
          Length = 909

 Score = 55.5 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFG-DI--- 56
             + D FCG GG+    E++  H      ++ +  +  +  + + NFP+T +F  DI   
Sbjct: 319 YTLFDAFCGAGGVSRGAERSGLH----VRYAVDVWDK-ACSSMRMNFPDTEVFETDIYGF 373

Query: 57  -AKIKTQDIPDHDVLLAGFPCQPFSQA 82
                 + I   DV+    PCQ +S A
Sbjct: 374 VTSTDGRVI-TADVVHLSPPCQFWSPA 399


>gi|297570127|ref|YP_003691471.1| DNA-cytosine methyltransferase [Desulfurivibrio alkaliphilus
          AHT2]
 gi|296926042|gb|ADH86852.1| DNA-cytosine methyltransferase [Desulfurivibrio alkaliphilus
          AHT2]
          Length = 363

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLFCG+G +   L        ++     +++      ++ N   +    D+ K+   +
Sbjct: 19 VVDLFCGVGALSHGLRNA----GLKILAGYDVDARCKYAFETNNSASFFSRDVGKLTAAE 74

Query: 64 IPDH------DVLLAGFPCQPFS 80
          +  H       VL    PCQPFS
Sbjct: 75 LKSHFSGNVPSVLAGCAPCQPFS 97


>gi|254825325|ref|ZP_05230326.1| deoxycytosine methylase [Listeria monocytogenes FSL J1-194]
 gi|255521307|ref|ZP_05388544.1| modification methylase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|293594568|gb|EFG02329.1| deoxycytosine methylase [Listeria monocytogenes FSL J1-194]
          Length = 385

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 54/133 (40%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY---QAN----------- 46
           MLK+ + F GIG  +  LE+   +   E   + E +  ++  Y     N           
Sbjct: 1   MLKVVEAFSGIGAQKQALEKL--NIEHEIISTIEWDINAIYAYDIMHHNDNAPSDLSKSE 58

Query: 47  -----------------FPNT--------------------LIFGDIAKIKTQDIP-DHD 68
                            F N                         DI ++    IP D D
Sbjct: 59  ILERLSNVTLSPDGKKPFSNHGFQRLKEEKLQKLYAAINRNRNLCDITQVTGDMIPGDTD 118

Query: 69  VLLAGFPCQPFSQ 81
           +L   FPCQ  S 
Sbjct: 119 LLTYSFPCQDLSV 131


>gi|317011903|gb|ADU82511.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori
           Lithuania75]
          Length = 544

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N    F  + I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINRKCKFDESYISGDIK 62

Query: 58  KIKTQD-IPD-------------HDVLLAGFPCQPFSQA 82
           K +T++ I                D+++A  PCQ  S A
Sbjct: 63  KPETKEKILKQIGFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|167887556|gb|ACA05980.1| tRNA aspartic acid methyltransferase 1 variant 6 [Homo sapiens]
          Length = 71

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAK 58
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T +     +I K
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEITK 61

Query: 59 IK 60
          I 
Sbjct: 62 IT 63


>gi|148977150|ref|ZP_01813790.1| adenine/cytosine DNA methyltransferase [Vibrionales bacterium
          SWAT-3]
 gi|145963619|gb|EDK28881.1| adenine/cytosine DNA methyltransferase [Vibrionales bacterium
          SWAT-3]
          Length = 820

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 34/106 (32%)

Query: 1  MLKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKT-YQANFPNT 50
          M+    LF   GIG   L           +C  ++E       I  Y+ K  Y++ +   
Sbjct: 1  MITYISLFSSAGIGCFGL------KELGFKCIATAELLEKRLNIQKYNNKCEYESGY--- 51

Query: 51 LIFGDIAKIKTQD--------------IPDHDVLLAGFPCQPFSQA 82
           I GD+ + +T D              + D D+++A  PCQ  S A
Sbjct: 52 -ICGDLTQKETHDTLYGEIDAYKQRKNLKDIDLVVATPPCQGMSVA 96


>gi|239931045|ref|ZP_04687998.1| putative 5-methylcytosine methyltransferase [Streptomyces
          ghanaensis ATCC 14672]
          Length = 483

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 20 QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPF 79
             +    +     E +  +  T +A        GD+        P   VL  G PCQ F
Sbjct: 1  MAADVLGYQVTG-IEWDDDACATREA-AGMDTFHGDVRNYSASLFPHAQVLTGGPPCQTF 58

Query: 80 SQAG 83
          + AG
Sbjct: 59 TVAG 62


>gi|317506927|ref|ZP_07964699.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
 gi|316254855|gb|EFV14153.1| C-5 cytosine-specific DNA methylase [Segniliparus rugosus ATCC
          BAA-974]
          Length = 399

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 32 SSEINPYSVKTYQAN----FPNT----LIFGDIAKIKTQDIPD-HDVLLAGFPCQPFSQA 82
          + E + ++  T +AN     P      ++  D+         D  D++  G PCQPFS  
Sbjct: 29 AVERDRWACDTLRANAAAGHPLVRGLRVLCDDVRSADWSGFEDGVDLVAGGPPCQPFSLG 88

Query: 83 G 83
          G
Sbjct: 89 G 89


>gi|67514587|ref|NP_001019999.1| DNA (cytosine-5)-methyltransferase 3B [Gallus gallus]
 gi|66766326|dbj|BAD99024.1| DNA methyltransferase 3B [Gallus gallus]
          Length = 851

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQA--NFPNTLIFGDIA 57
           +++  LF GI    L L+       VE + +SEI  +P +V T +   N        +I 
Sbjct: 569 IRVLSLFDGIATGYLVLKDLG--IQVEKYIASEICEDPLAVGTVRHEGNITYVHDVRNIT 626

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQA 82
           K   ++    D+++ G PC   S A
Sbjct: 627 KRNIEEWGPFDLVIGGSPCNDLSLA 651


>gi|323942311|gb|EGB38482.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli E482]
          Length = 94

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +K+ D F G GG      Q      ++  F  + +  +  +++ANFP    I  DI  I 
Sbjct: 12 IKVFDFFSGCGGTSQGFHQA----GMDIVFGLDFDVDAASSFRANFPQAAFINSDIRLID 67

Query: 61 TQDIPD 66
             I  
Sbjct: 68 NNAINK 73


>gi|147919344|ref|YP_686920.1| C-5 cytosine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
 gi|110622316|emb|CAJ37594.1| C-5 cytosine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 419

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 39/132 (29%), Gaps = 54/132 (40%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------------- 46
             + DLF G GG+     +       +     E + ++ KT Q                 
Sbjct: 5   YTVLDLFSGAGGLTEGFYR----NGFDIISHIEKDEFASKTLQTRSLYYALLKINKVHIY 60

Query: 47  ----------------------------FPN-TLIFGD--IAKIKTQ----DIPDHDVLL 71
                                           +LI  D  I KI TQ    +I   +V++
Sbjct: 61  YNYYNNRINRDEFLKQCCELGIDNSEVIHEEISLITEDSLIDKINTQLIKRNINKINVVI 120

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S  G
Sbjct: 121 GGPPCQAYSLIG 132


>gi|24431594|gb|AAN61474.1| Putative DNA cytosine methyltransferase Zmet3 [Oryza sativa
           Japonica Group]
          Length = 881

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +   H  ++   S E +  +    ++ +  T     +   D+
Sbjct: 680 MNVLSLFSGIGGAEVALHRLGIH--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 737

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 738 RHLTTERIETFIRRFGGFDLVIGGSPC 764


>gi|15676623|ref|NP_273767.1| modification methylase HgaI-1 [Neisseria meningitidis MC58]
 gi|5578896|emb|CAB51245.1| m5C-methyltransferase [Neisseria meningitidis]
 gi|7225952|gb|AAF41138.1| modification methylase HgaI-1 [Neisseria meningitidis MC58]
 gi|308388915|gb|ADO31235.1| modification methylase HgaI-1 [Neisseria meningitidis alpha710]
 gi|316983707|gb|EFV62688.1| modification methylase HgaIA [Neisseria meningitidis H44/76]
 gi|325133760|gb|EGC56416.1| DNA-cytosine methyltransferase [Neisseria meningitidis M13399]
 gi|325140119|gb|EGC62648.1| DNA-cytosine methyltransferase [Neisseria meningitidis CU385]
 gi|325144071|gb|EGC66379.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          M01-240013]
 gi|325200590|gb|ADY96045.1| DNA-cytosine methyltransferase [Neisseria meningitidis H44/76]
 gi|325206432|gb|ADZ01885.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          M04-240196]
 gi|325207770|gb|ADZ03222.1| DNA-cytosine methyltransferase [Neisseria meningitidis NZ-05/33]
          Length = 352

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 15/92 (16%)

Query: 1  MLKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIA 57
          M+    LF   GI       E   ++  ++   ++E+ P     Y+A +P   +I GDI 
Sbjct: 1  MMIGASLFSSAGI------AETYLHNAGIKIIAANELVPERANLYKALYPESKMIIGDIL 54

Query: 58 KIK-----TQDIPDH-DVLLAGFPCQPFSQAG 83
            +      Q +P+  D L+A  PCQ  S AG
Sbjct: 55 HEEVFQNLIQSVPNRLDFLIASPPCQGMSVAG 86


>gi|289620954|emb|CBI52688.1| unnamed protein product [Sordaria macrospora]
          Length = 1536

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  DL+CG G     LE+      VE  ++++I   ++ TY AN P+        G + 
Sbjct: 858 LKGMDLYCGGGNFGRGLEEGGV---VEMRWANDIWDKAIHTYMANTPDPEKTNPFLGSVD 914

Query: 58  KIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
            +         + ++P   + D + AG PC  FS 
Sbjct: 915 DLLRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSL 949


>gi|164510148|emb|CAJ40945.1| putative DNA cytosine methyltransferase [Sordaria macrospora]
          Length = 1536

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           LK  DL+CG G     LE+      VE  ++++I   ++ TY AN P+        G + 
Sbjct: 858 LKGMDLYCGGGNFGRGLEEGGV---VEMRWANDIWDKAIHTYMANTPDPEKTNPFLGSVD 914

Query: 58  KIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
            +         + ++P   + D + AG PC  FS 
Sbjct: 915 DLLRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSL 949


>gi|20531193|gb|AAM27410.1|AF500229_1 RIP defective [Neurospora tetrasperma]
          Length = 820

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDI--- 56
               D F G GG    +     H    C    +   ++V +  ANF   +T I+ DI   
Sbjct: 281 YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTIY-DIDMH 335

Query: 57  AKIKTQDIPD-HDVLLAGFPCQPFSQA 82
             I  ++I    D+L    PCQ +S A
Sbjct: 336 NFIVDKEIRHRVDILHLSPPCQVWSPA 362


>gi|38505643|ref|NP_942264.1| hypothetical protein ssl5108 [Synechocystis sp. PCC 6803]
 gi|38423667|dbj|BAD01878.1| unknown protein [Synechocystis sp. PCC 6803]
          Length = 75

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          LK  DLF G GG  L  EQT     ++     EI+P      Q ++P
Sbjct: 9  LKHLDLFAGCGGFTLAAEQTGGK--IQTTQFVEIDPDCHAILQHHWP 53


>gi|168070728|ref|XP_001786917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660176|gb|EDQ48269.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 290

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           I +LF GIG  R  L         +     EI+  +V++Y A +        +     + 
Sbjct: 134 ILELFGGIGAPRKALINLGVEH--KAIDYVEIDEKAVRSYNAMYDRLHKPQSVVGWNLR- 190

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
               D+L  G PCQ +S++G
Sbjct: 191 ---PDILCHGSPCQDYSRSG 207


>gi|57506140|ref|ZP_00372061.1| adenine/cytosine DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
 gi|57015535|gb|EAL52328.1| adenine/cytosine DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
          Length = 817

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 25/100 (25%)

Query: 2   LKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP----NTLIFGD 55
           L    LF   G+G         F     EC  ++E+    +K  + N      N  I GD
Sbjct: 7   LTYISLFSSAGVGC------YGFKEAGFECIATNELLEKRLKIQKLNHKCKYENGYILGD 60

Query: 56  IAK--IKTQDIP-----------DHDVLLAGFPCQPFSQA 82
           I K  IK Q                DVL+A  PCQ  S A
Sbjct: 61  IKKQEIKNQIFNQIDLYKRLGNDKIDVLIATPPCQGMSVA 100


>gi|300861667|ref|ZP_07107751.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
 gi|300849128|gb|EFK76881.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 385

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 54/133 (40%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY---QAN----------- 46
           MLK+ + F GIG  +  LE+   +   E   + E +  ++  Y     N           
Sbjct: 1   MLKVVEAFSGIGAQKQALEKL--NIEHEIINTIEWDINAIYAYDIMHHNDNSPSKLSKHE 58

Query: 47  -----------------FPNTLIFG--------------------DIAKIKTQDIPD-HD 68
                            F +  ++                     DI ++    IPD  D
Sbjct: 59  IIERLANVTLSPDGKKPFSDNGLYRIKEEKLQKLYAAIRRNNNLCDITQVSGDMIPDDTD 118

Query: 69  VLLAGFPCQPFSQ 81
           +L   FPCQ  S 
Sbjct: 119 LLTYSFPCQDLSI 131


>gi|229547357|ref|ZP_04436082.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
           TX1322]
 gi|256854885|ref|ZP_05560249.1| predicted protein [Enterococcus faecalis T8]
 gi|307292237|ref|ZP_07572101.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|229307506|gb|EEN73493.1| possible DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis
           TX1322]
 gi|256710445|gb|EEU25489.1| predicted protein [Enterococcus faecalis T8]
 gi|306496743|gb|EFM66296.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX0411]
 gi|315028686|gb|EFT40618.1| DNA (cytosine-5-)-methyltransferase [Enterococcus faecalis TX4000]
          Length = 391

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 54/133 (40%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY---QAN----------- 46
           MLK+ + F GIG  +  LE+   +   E   + E +  ++  Y     N           
Sbjct: 7   MLKVVEAFSGIGAQKQALEKL--NIEHEIINTIEWDINAIYAYDIMHHNDNSPSKLSKHE 64

Query: 47  -----------------FPNTLIFG--------------------DIAKIKTQDIPD-HD 68
                            F +  ++                     DI ++    IPD  D
Sbjct: 65  IIERLANVTLSPDGKKPFSDNGLYRIKEEKLQKLYAAIRRNNNLCDITQVSGDMIPDDTD 124

Query: 69  VLLAGFPCQPFSQ 81
           +L   FPCQ  S 
Sbjct: 125 LLTYSFPCQDLSI 137


>gi|167754389|ref|ZP_02426516.1| hypothetical protein ALIPUT_02683 [Alistipes putredinis DSM
          17216]
 gi|167659014|gb|EDS03144.1| hypothetical protein ALIPUT_02683 [Alistipes putredinis DSM
          17216]
          Length = 495

 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVEC---FFSSEINPYSVKTYQANFPNTLIF-GD 55
          +K    DLFCG GG    +E    H   +C         +  ++ ++ AN P+ L F  D
Sbjct: 1  MKLLYIDLFCGAGGTSTGVENA-RHDGRQCAKVIGCVNHDANAIASHAANHPDALHFTED 59

Query: 56 IAKIKTQDI-----------PD-HDVLLAGFPCQPFSQA 82
          I  ++   +           PD   VL A   C  FS+A
Sbjct: 60 IRTLELSPLTAHIAEMRRQYPDAFVVLWASLECTNFSKA 98


>gi|306829493|ref|ZP_07462683.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428579|gb|EFM31669.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 450

 Score = 54.8 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAK-- 58
            +   LF   G      E  F    +    ++E+ P  V+ Y+  +PN  +F GD+    
Sbjct: 69  FRGISLFASAG----VAETYFEKHGIHVKVAAELLPERVRIYKHLYPNVNVFQGDLTDKE 124

Query: 59  -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
                IK       D L+A  PCQ  S AG
Sbjct: 125 VYDEVIKAAIDEKCDFLIATPPCQGMSTAG 154


>gi|295666203|ref|XP_002793652.1| C-5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb01]
 gi|226277946|gb|EEH33512.1| C-5 cytosine methyltransferase DmtA [Paracoccidioides brasiliensis
           Pb01]
          Length = 653

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
             + D FCG GG+     Q     N    +  + +  ++ +Y+ NF   + +  D+A   
Sbjct: 327 YTLGDGFCGAGGVSRGALQAGLRLN----WGFDHSVAAMNSYRLNFETAIGYTSDVADFL 382

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
              T +I   D+L    PCQ FS A
Sbjct: 383 ANNTDEI-IIDILHFSPPCQTFSPA 406


>gi|302343998|ref|YP_003808527.1| DNA-cytosine methyltransferase [Desulfarculus baarsii DSM 2075]
 gi|301640611|gb|ADK85933.1| DNA-cytosine methyltransferase [Desulfarculus baarsii DSM 2075]
          Length = 371

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+   L +      V+     +I+P     Y AN     +   + +++  ++
Sbjct: 20 VDLFCGAGGLTHGLVKA----GVDVRLGVDIDPACEHPYVANNNARFLLKSVEELEASEL 75

Query: 65 PDH------DVLLAGFPCQPFS 80
            H       +L    PCQ FS
Sbjct: 76 ERHYRKNGIKLLAGCAPCQTFS 97


>gi|116751262|ref|YP_847949.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans
          MPOB]
 gi|116700326|gb|ABK19514.1| DNA-cytosine methyltransferase [Syntrophobacter fumaroxidans
          MPOB]
          Length = 371

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+   L +      V+     +I+P     Y AN     +   + +++  ++
Sbjct: 20 VDLFCGAGGLTHGLVKA----GVDVRLGVDIDPACEHPYVANNNARFLLKSVEELEASEL 75

Query: 65 PDH------DVLLAGFPCQPFS 80
            H       +L    PCQ FS
Sbjct: 76 ERHYRKNGIKLLAGCAPCQTFS 97


>gi|297842789|ref|XP_002889276.1| hypothetical protein ARALYDRAFT_895912 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335117|gb|EFH65535.1| hypothetical protein ARALYDRAFT_895912 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 876

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  +++ N P T +  
Sbjct: 221 LLDLYSGCGAMSTGFCMGASIAGVKLITKWSVDINKFACDSFRHNHPETEVRN 273


>gi|2766715|gb|AAB95486.1| chromomethylase [Arabidopsis arenosa]
 gi|2865435|gb|AAC02671.1| chromomethylase [Arabidopsis arenosa]
          Length = 744

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  +++ N P T +  
Sbjct: 211 LLDLYSGCGAMSTGFCMGASIAGVKLITKWSVDINKFACDSFRHNHPETEVRN 263


>gi|325131565|gb|EGC54272.1| adenine/cytosine DNA methyltransferase [Neisseria meningitidis
           M6190]
          Length = 877

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 56  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 106

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 107 GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 144


>gi|257438608|ref|ZP_05614363.1| modification methylase NgoMIV [Faecalibacterium prausnitzii
          A2-165]
 gi|257198937|gb|EEU97221.1| modification methylase NgoMIV [Faecalibacterium prausnitzii
          A2-165]
          Length = 293

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                   E         +AN P   +I  D+ K         D+L  G PC PFS AG
Sbjct: 2  AGFVHVALVEYEQEYCNVLKANRPEWNVICADVHKFDGHPYEGVDLLAGGVPCPPFSVAG 61


>gi|254672007|emb|CBA04511.1| C-5 cytosine-specific DNA methylase [Neisseria meningitidis
           alpha275]
 gi|261391820|emb|CAX49276.1| putative modification methylase (cytosine-specific
           methyltransferase) [Neisseria meningitidis 8013]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|325143130|gb|EGC65477.1| Modification methylase HgaIA [Neisseria meningitidis 961-5945]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|297804242|ref|XP_002870005.1| chromomethylase 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297315841|gb|EFH46264.1| chromomethylase 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1253

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGD 55
           + DL+ G GG+   L        V+    ++ + N  + ++ + N PNT +  D
Sbjct: 687 VLDLYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNMAACESLKLNHPNTQVRND 740


>gi|325197576|gb|ADY93032.1| Modification methylase HgaIA [Neisseria meningitidis G2136]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|206579328|ref|YP_002239202.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
 gi|206568386|gb|ACI10162.1| DNA-cytosine methyltransferase [Klebsiella pneumoniae 342]
          Length = 347

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQD 63
           D+FCG GG+   L     + +       +I+       + N  NT  +   + ++ + +
Sbjct: 6  VDIFCGAGGLTYGLRTAGINVSHGI----DIDESCRYVIEKNNENTEFVHRSVTELSSDE 61

Query: 64 IP------DHDVLLAGFPCQPFS 80
          +       +  +L    PCQPFS
Sbjct: 62 VSSMFQTGNVKLLAGCAPCQPFS 84


>gi|121634167|ref|YP_974412.1| putative DNA methylase [Neisseria meningitidis FAM18]
 gi|120865873|emb|CAM09607.1| putative DNA methylase [Neisseria meningitidis FAM18]
 gi|325139180|gb|EGC61726.1| Modification methylase HgaIA [Neisseria meningitidis ES14902]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|11877311|emb|CAC19024.1| putative adenine/cytosine DNA methyltransferase [Neisseria
           meningitidis]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|309379751|emb|CBX21527.1| putative DNA cytosine methyltransferase [Neisseria lactamica
           Y92-1009]
          Length = 612

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|317497298|ref|ZP_07955621.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895367|gb|EFV17526.1| C-5 cytosine-specific DNA methylase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 363

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 40/140 (28%), Gaps = 60/140 (42%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE----------------------INPY 38
           MLK+ + F G G  R+ L         +    SE                      I+ Y
Sbjct: 1   MLKVFEAFAGYGSQRMALRNVG--IEFKVVGISEIEGDVIKSYAAIHSDFLEKREYIDDY 58

Query: 39  ---------------------------SVK--------TYQANFPNTLIFGDIAKIKTQD 63
                                      + K         Y AN      +GDI +I    
Sbjct: 59  VPADKEEMITFLEKINVPLDYKTFENKARKLKLPNLKDMYLAN-KLINNYGDIQRINPAS 117

Query: 64  IPDHDVLLAGFPCQPFSQAG 83
           +P+ D+    FPCQ  S AG
Sbjct: 118 LPEFDLFTYSFPCQDISVAG 137


>gi|313113254|ref|ZP_07798867.1| hypothetical protein HMPREF9436_00712 [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|310624427|gb|EFQ07769.1| hypothetical protein HMPREF9436_00712 [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 66

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L    LF GIGGI L  E              E   +      +++P    F DI  +  
Sbjct: 3  LTHFSLFSGIGGIDLAAEAA----GFTSVCQCEWAAFPAAVLASHWPEVSRFQDITTVTK 58

Query: 62 QDI 64
          +  
Sbjct: 59 EAF 61


>gi|167462173|ref|ZP_02327262.1| hypothetical protein Plarl_06385 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 232

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI--K 60
          K+ DLFC  GG              E     +I P      Q N+P   I+ D  ++   
Sbjct: 4  KLLDLFCKAGGCSAGYASA----GFEVIG-VDIEP------QPNYPYEFIWADAFEVLKD 52

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
           + I   DV+ A  PCQ  S+A
Sbjct: 53 HELIDQFDVIHASPPCQAHSKA 74


>gi|325203406|gb|ADY98859.1| Modification methylase HgaIA [Neisseria meningitidis M01-240355]
          Length = 862

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 27/98 (27%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSE-------INPYSVKTYQANFPNTLIF 53
               LF   G+G         F     EC  ++E       I  Y+ K     F +  I 
Sbjct: 41  TYISLFSSAGVGC------YGFKTNGFECVATNELLEKRLKIQKYNQKC---RFDSGYIA 91

Query: 54  GDIAKIKTQ-----DIP----DHDVLLAGFPCQPFSQA 82
           GDI   +TQ     +I     + DV++A  PCQ  S A
Sbjct: 92  GDITLPETQAKLFAEIRRWNTEIDVVIATPPCQGMSVA 129


>gi|238586055|ref|XP_002391053.1| hypothetical protein MPER_09571 [Moniliophthora perniciosa FA553]
 gi|215455233|gb|EEB91983.1| hypothetical protein MPER_09571 [Moniliophthora perniciosa FA553]
          Length = 494

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
           L+  +LF G GG+   +  +     V+  ++ EI+P +  +Y+AN P+T+++
Sbjct: 401 LRGLELFSGAGGLGTGMNSSGY---VDTKWAVEISPAAAMSYRANHPDTIVY 449


>gi|268611959|ref|ZP_06145686.1| adenine/cytosine DNA methyltransferase [Ruminococcus flavefaciens
           FD-1]
          Length = 840

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 26/101 (25%)

Query: 2   LKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGD 55
           L    LF   G+G         F  R  EC  ++EI    +   + N    +    I GD
Sbjct: 9   LTYISLFSSAGVGC------YGFKMRGFECIATNEIVERRINVQKFNEKCKYETGYICGD 62

Query: 56  IAKIKT--------------QDIPDHDVLLAGFPCQPFSQA 82
           I +                 + I +  V++A  PCQ  S A
Sbjct: 63  ITEESVKQHLLGEVERWRKHEKINNVTVVVATPPCQGMSVA 103


>gi|218199194|gb|EEC81621.1| hypothetical protein OsI_25142 [Oryza sativa Indica Group]
          Length = 1538

 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1105 LDIFAGCGGLSQGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1161

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1162 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1211


>gi|85094494|ref|XP_959891.1| hypothetical protein NCU02247 [Neurospora crassa OR74A]
 gi|13936826|gb|AAK49954.1|AF348971_1 DNA methyltransferase Dim-2 [Neurospora crassa]
 gi|28921348|gb|EAA30655.1| predicted protein [Neurospora crassa OR74A]
          Length = 1454

 Score = 54.4 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 18/95 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  DL+CG G     LE+      VE  ++++I   ++ TY AN P+        G + 
Sbjct: 840 LRGMDLYCGGGNFGRGLEEGGV---VEMRWANDIWDKAIHTYMANTPDPNKTNPFLGSVD 896

Query: 58  KIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
            +         + ++P   + D + AG PC  FS 
Sbjct: 897 DLLRLALEGKFSDNVPRPGEVDFIAAGSPCPGFSL 931


>gi|293407987|ref|ZP_06651827.1| modification methylase NmeDIP [Escherichia coli B354]
 gi|301328020|ref|ZP_07221181.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|291472238|gb|EFF14720.1| modification methylase NmeDIP [Escherichia coli B354]
 gi|300845467|gb|EFK73227.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli MS 78-1]
          Length = 379

 Score = 54.4 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 24/99 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPNTLIFG---- 54
           +   F G G + L  E    +   E  F +E +P  +  Y+      N P    FG    
Sbjct: 8   VFSFFSGSGFLDLGFE----NSGYEVVFVNEFHPPFMDAYKHSRAVMNKP-IPRFGYAEE 62

Query: 55  DIAKIKTQDIPDHD----------VLLAGFPCQPFSQAG 83
            I +I  + + D+             + G PC  FS AG
Sbjct: 63  SIEEIDHKKLKDNIKALKKEKRLIGFIGGPPCPDFSVAG 101


>gi|237737311|ref|ZP_04567792.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421173|gb|EEO36220.1| DNA-cytosine methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 407

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 49/127 (38%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---------------- 45
           +   DLF G GG+     +             E    +  T +                 
Sbjct: 1   MNCLDLFSGAGGLTEGFVRA----GYNIIAHVEKEFSASLTLKTRIAYHYLKQTNQLKIY 56

Query: 46  ---------------NFP----NTLIFGDIAKIKTQDI----------PDHDVLLAGFPC 76
                          + P    +++I  +I      DI           + D+++ G PC
Sbjct: 57  YSYLNDEISREKLYSHIPSQLLDSVINEEINDESINDIYNKIDILRGNKEIDIIIGGPPC 116

Query: 77  QPFSQAG 83
           Q +S  G
Sbjct: 117 QAYSLIG 123


>gi|290997570|ref|XP_002681354.1| predicted protein [Naegleria gruberi]
 gi|284094978|gb|EFC48610.1| predicted protein [Naegleria gruberi]
          Length = 435

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 35/113 (30%), Gaps = 33/113 (29%)

Query: 4   ITDLFCGIGGIRLDLE--QTF-------NHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           I + + GIGG R+ LE  Q F                + +IN  +   Y   F +     
Sbjct: 10  IAEFYSGIGGTRMSLEMIQAFFEAQVNGKKIKFNWIEAFDINENANTLYNNLFNHKPCAK 69

Query: 55  DIAKIKTQDIPDHD------------------------VLLAGFPCQPFSQAG 83
           DI  I   D  +H                         +     PCQPF+  G
Sbjct: 70  DIVHIPIGDFQNHYFKLFKNSSLEQAKKKLKTEQTRKLMWTMSPPCQPFTLNG 122


>gi|18700045|gb|AAL03947.1| DNA methyltransferase Cfr10IM [Citrobacter freundii]
          Length = 362

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 26/105 (24%)

Query: 1   MLKIT--DLFCGIGGIRLDLEQTFNHRNVECFFSSEI-------NPYSVKTYQANFPNTL 51
           M K      F G G + L  E    H      F +E          +S K    N P   
Sbjct: 1   MKKAIIFSFFSGAGFLDLGFE----HAGFTVEFVNEYHAPFLEAYKFSRKKLGINEPKYG 56

Query: 52  IF-GDIAKIKTQDIPDH-----D-------VLLAGFPCQPFSQAG 83
            + GDI  I +Q+  D      D         + G PC  FS  G
Sbjct: 57  YYLGDIRDISSQNKEDFRKNVTDAKKSSLVGFIGGPPCPDFSVGG 101


>gi|321310707|ref|YP_004193036.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
          Langford 1]
 gi|319802551|emb|CBY93197.1| C-5 cytosine-specific DNA methylase [Mycoplasma haemofelis str.
          Langford 1]
          Length = 340

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP--------DHDV 69
          EQ             EI+  +  T + N P+  ++  DI  +  +D+         + D+
Sbjct: 23 EQAGFEH----LALIEIDEDASNTLRKNKPHWNVLCEDIKNVAERDLEKEFGIKKGELDL 78

Query: 70 LLAGFPCQPFSQAG 83
          +  G PCQ FS AG
Sbjct: 79 ISGGAPCQNFSYAG 92


>gi|289616708|emb|CBI56658.1| unnamed protein product [Sordaria macrospora]
          Length = 872

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
               D F G GG    +     H    C    +   ++V + +ANF     T+   D+  
Sbjct: 306 YTAGDTFAGAGGAFCGISDAGLHLEF-CV---DNWEHAVASLKANFQGDGTTIYDMDMHD 361

Query: 59  --IKTQDIPDHDVLLAGFPCQPFSQA 82
             I        D+L    PCQ +S A
Sbjct: 362 LIINKDIRRRVDILHLSPPCQVWSPA 387


>gi|219119343|ref|XP_002180434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407907|gb|EEC47842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 699

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 21/98 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTLIFGDI 56
           L + D+F GIG   + L++     + +     E +  S   YQ N      P     GDI
Sbjct: 242 LTVLDMFAGIGTATVCLKRLGLQIS-KIV-RVEHDHISTHVYQENHDCSYNPTLADHGDI 299

Query: 57  AKI---KTQDIPD-----------HDVLLAGFPCQPFS 80
             +   K +D  D            D+++ G PC  +S
Sbjct: 300 KHVYCQKFEDFRDNLEHMAETHGPFDLVIGGPPCVDYS 337


>gi|164510146|emb|CAJ40944.1| putative DNA cytosine methyltransferase [Sordaria macrospora]
          Length = 872

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAK 58
               D F G GG    +     H    C    +   ++V + +ANF     T+   D+  
Sbjct: 306 YTAGDTFAGAGGAFCGISDAGLHLEF-CV---DNWEHAVASLKANFQGDGTTIYDMDMHD 361

Query: 59  --IKTQDIPDHDVLLAGFPCQPFSQA 82
             I        D+L    PCQ +S A
Sbjct: 362 LIINKDIRRRVDILHLSPPCQVWSPA 387


>gi|325266450|ref|ZP_08133127.1| modification methylase XorII [Kingella denitrificans ATCC 33394]
 gi|324981893|gb|EGC17528.1| modification methylase XorII [Kingella denitrificans ATCC 33394]
          Length = 371

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDIP------DHDVLL 71
          E    H       + +I+P     Y+ NFP+T +   D++ +              D ++
Sbjct: 22 ELAGFH----TIAAIDIDPTLQSAYKNNFPHTKVLNKDLSLLDENGWRHILGRQKIDGVI 77

Query: 72 AGFPCQPFSQAG 83
           G PCQ +S+ G
Sbjct: 78 GGPPCQGYSRMG 89


>gi|302757657|ref|XP_002962252.1| hypothetical protein SELMODRAFT_76095 [Selaginella moellendorffii]
 gi|300170911|gb|EFJ37512.1| hypothetical protein SELMODRAFT_76095 [Selaginella moellendorffii]
          Length = 338

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
           +++  LF GIGG  + L +           S E N  + +  +  +          I  D
Sbjct: 216 IRMLSLFSGIGGAEVALHRAGIKLKF--VVSVESNVDNRRILERWWSTSGQTGQHRILDD 273

Query: 56  IAKIK-------TQDIPDHDVLLAGFPC 76
           +  +         ++    D+++ G PC
Sbjct: 274 VQDLTMAVVARLMEESGGFDLVIGGSPC 301


>gi|310796311|gb|EFQ31772.1| C-5 cytosine-specific DNA methylase [Glomerella graminicola M1.001]
          Length = 1141

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
           L+  DLFCG G     LE+      +E  +++++N  ++ TY AN  NT     G I  +
Sbjct: 616 LRGFDLFCGGGNFGRGLEEGGV---IEMNWANDLNVKAIHTYMANTANTVYPFAGSIDDL 672

Query: 60  KT--------QDIP---DHDVLLAGFPCQPFSQ 81
           +T        + +P     D +  G PC  FS+
Sbjct: 673 QTLALQGKFSKKVPPVGSVDFVSGGSPCPGFSR 705


>gi|208964726|gb|ACI31553.1| MET1 [Nicotiana benthamiana]
          Length = 227

 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
            D+F G GG+   L+++      +  ++ E    +   ++ N P   +F           
Sbjct: 21  LDIFAGCGGLSEGLQRSGVS---DTKWAIEYEEPAGDAFKLNHPEAEVFIQNCNVFLRAV 77

Query: 54  ----GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
               GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 78  MQKCGDAEDCISTPEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFS 127


>gi|218709639|ref|YP_002417260.1| cytosine-specific methyltransferase HgiDII; restriction system
          [Vibrio splendidus LGP32]
 gi|218322658|emb|CAV18834.1| Cytosine-specific methyltransferase HgiDII; restriction system
          [Vibrio splendidus LGP32]
          Length = 355

 Score = 54.4 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 5  TDLFCGIGGIRLDLEQTFNH--RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           DLFCG GG+   L+Q         +   +     +    Y+ N     +   ++ +  +
Sbjct: 10 VDLFCGAGGLTHGLQQAGIDVRAGFDLESTC---KFP---YEHNNQAEFVQKSVSDLTGK 63

Query: 63 DI-PDHD-----VLLAGFPCQPFS 80
          DI    D     +L    PCQPFS
Sbjct: 64 DIVSRFDEHAYTLLAGCAPCQPFS 87


>gi|257096314|sp|B1Q3J6|DNM1B_ORYSJ RecName: Full=DNA (cytosine-5)-methyltransferase 1B; Short=OsMET1b;
            AltName: Full=DNA methyltransferase 1-2; Short=OsMET1-2
 gi|171196103|dbj|BAG15929.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1529

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1096 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1152

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1153 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1202


>gi|42561466|ref|NP_975917.1| cytosine-specific DNA-methyltransferase [Mycoplasma mycoides
          subsp. mycoides SC str. PG1]
 gi|42492965|emb|CAE77559.1| Cytosine-specific DNA-methyltransferase [Mycoplasma mycoides
          subsp. mycoides SC str. PG1]
          Length = 116

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 32 SSEINPYSVKTYQANFP-NTLIFGDIAK-------IKTQDIPDHDVLLAGFPCQPFSQAG 83
          + + N  +++T++ N P + +I GDI         IK       ++++ G PCQ FS  G
Sbjct: 3  AVDFNKSALETFKHNMPWSDIICGDITNESIRQEIIKRATKLKVNMIIGGPPCQGFSNKG 62


>gi|307354298|ref|YP_003895349.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM
           11571]
 gi|307157531|gb|ADN36911.1| DNA-cytosine methyltransferase [Methanoplanus petrolearius DSM
           11571]
          Length = 421

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 54/130 (41%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPNTLIFGD------- 55
           + D+F G GG+     +     +       E N  +  T     F ++L   D       
Sbjct: 7   VLDMFAGAGGLTEGFFR----NDFNIVTHIEKNTTACHTLATRAFYHSLAKKDRQDIYYD 62

Query: 56  -----------IAKIKTQDIP-------------------------------DHDVLLAG 73
                      I + K+ DIP                               D DV++ G
Sbjct: 63  YYDQNLTREEFIEECKSLDIPDPGVFNCELSPERENSIKKMVGGRLEEAGRKDVDVIIGG 122

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 123 PPCQAYSVIG 132


>gi|222636555|gb|EEE66687.1| hypothetical protein OsJ_23341 [Oryza sativa Japonica Group]
          Length = 1555

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1122 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1178

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1179 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1228


>gi|50509186|dbj|BAD30340.1| putative DNA methyltransferase [Oryza sativa Japonica Group]
          Length = 1548

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1115 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1171

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1172 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1221


>gi|109638476|ref|YP_656741.1| ORF86 [Ranid herpesvirus 1]
 gi|4219046|gb|AAD12284.1| ORF86 [Ranid herpesvirus 1]
          Length = 739

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDI-------- 56
           D+F G GG+ L L         +  ++ +  P ++   +AN  N T I  D+        
Sbjct: 280 DVFSGCGGLSLGLCDAGL---CDVRWAIDNWPVALDALKANHANATTIEADVGVALHALQ 336

Query: 57  ----AKIKTQDIPDHDVLLAGFPCQPFSQ 81
                      + + + ++ G PCQ +S 
Sbjct: 337 ESGTMSHPWPAVGEVECMVGGPPCQGYSI 365


>gi|194227134|ref|XP_001916681.1| PREDICTED: similar to tRNA (cytosine-5-)-methyltransferase (DNA
           (cytosine-5)-methyltransferase-like protein 2) (Dnmt2)
           (DNA methyltransferase homolog HsaIIP) (DNA MTase
           homolog HsaIIP) (M.HsaIIP) (PuMet) [Equus caballus]
          Length = 435

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 28  ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHD-----VLLAGFPCQPFSQA 82
           +   + ++N  + + Y+ NFP+T +      I+   + + D     ++L   PCQPF++ 
Sbjct: 72  QVVAAIDVNTVANEVYKYNFPHTQLLA--KTIEGITLEEFDRLSFNMILMSPPCQPFTRI 129

Query: 83  G 83
           G
Sbjct: 130 G 130


>gi|40021636|gb|AAR37052.1| putative cytosine DNA methyltransferase [Neurospora tetrasperma]
          Length = 246

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP--NTLIFGDI--- 56
               D F G GG    +     H    C    +   ++V +  ANF   +T I+ DI   
Sbjct: 89  YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTIY-DIDMH 143

Query: 57  AKIKTQDIPD-HDVLLAGFPCQPFSQA 82
             I  ++I    D+L    PCQ +S A
Sbjct: 144 NFIVDKEIRHRVDILHLSPPCQVWSPA 170


>gi|294084868|ref|YP_003551628.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664443|gb|ADE39544.1| DNA-cytosine methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 538

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 53/132 (40%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK--TYQANF----PNTL--- 51
           ML + D+F G GG+     Q       +   S E++P + K  T +  F    P+ +   
Sbjct: 1   MLPVIDIFAGPGGLGEGFAQA----GFDVRLSVEMDPIAYKTLTLRKFFNQFTPDKVPSK 56

Query: 52  ----IFGDIAKIKTQDI-----------------------------------PDHD-VLL 71
               + G+I + + + +                                   P  D +L+
Sbjct: 57  YYSFVRGEIDQSELEQLYPIEWEKAVSAVANIELGTEKGNSELYERLDKLVSPSEDFILI 116

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S AG
Sbjct: 117 GGPPCQAYSLAG 128


>gi|171196104|dbj|BAG15930.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1486

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1053 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1109

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1110 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1159


>gi|57471644|emb|CAI39483.1| tRNA aspartic acid methyltransferase 1 [Homo sapiens]
          Length = 134

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQDIP--DHDVLLAGFPCQPFSQ 81
          +   + ++N  + + Y+ NFP+T +    I  I  ++      D++L   PCQPF++
Sbjct: 7  QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTR 63


>gi|37201980|tpg|DAA01513.1| TPA_exp: putative cytosine-5 DNA methyltransferase [Oryza sativa
            (japonica cultivar-group)]
          Length = 1497

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +     
Sbjct: 1064 LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1120

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         ++P   + + +  G PCQ FS
Sbjct: 1121 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 1170


>gi|14573295|gb|AAK68034.1| DNA methyltransferase 2b [Homo sapiens]
          Length = 137

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQDIP--DHDVLLAGFPCQPFSQ 81
          +   + ++N  + + Y+ NFP+T +    I  I  ++      D++L   PCQPF++
Sbjct: 10 QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTR 66


>gi|210610943|ref|ZP_03288668.1| hypothetical protein CLONEX_00858 [Clostridium nexile DSM 1787]
 gi|210152243|gb|EEA83250.1| hypothetical protein CLONEX_00858 [Clostridium nexile DSM 1787]
          Length = 170

 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
               +LF G GG+ L +E+       +     E +  +  + + N P+  +I  D+A I 
Sbjct: 101 YTTIELFAGAGGLALGIEKA----GFDTLGLIEFDKDASDSLKKNRPDWRVINEDVANIS 156


>gi|38505603|ref|NP_942224.1| hypothetical protein ssl5068 [Synechocystis sp. PCC 6803]
 gi|38423627|dbj|BAD01838.1| unknown protein [Synechocystis sp. PCC 6803]
          Length = 75

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          LK  DLF G GG  L  EQT     ++     EI+P      Q ++P
Sbjct: 9  LKHLDLFAGCGGFTLAAEQTRGK--IQTTQFVEIDPDCHAILQHHWP 53


>gi|319778257|ref|YP_004129170.1| modification methylase BepI-like protein [Taylorella equigenitalis
           MCE9]
 gi|317108281|gb|ADU91027.1| modification methylase BepI-like protein [Taylorella equigenitalis
           MCE9]
          Length = 130

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 27  VECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI------KTQDIPD-HDVLLAGFPC 76
            +  F+++I P +   +   F   P+      I ++      + + IPD  DVL  GFPC
Sbjct: 39  FKTVFANDIKPDAKIVWDNYFRRDPSIFKVASIVELVKSHNSELKKIPDSIDVLTGGFPC 98

Query: 77  QPFSQAG 83
           Q FS +G
Sbjct: 99  QDFSVSG 105


>gi|260431282|ref|ZP_05785253.1| DNA-cytosine methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415110|gb|EEX08369.1| DNA-cytosine methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 497

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 50/130 (38%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKT------------------- 42
           I DLF G GG+     Q        ++   S E++ ++++T                   
Sbjct: 7   IIDLFAGPGGLGEGFSQAGRDPGAPMKIKLSVEMDDHAIQTLQLRAFLRSFDEFPQEYHD 66

Query: 43  --------------YQANF------------PNTLIFGDIA---KIKTQDIPDHDVLLAG 73
                         Y AN+              + +F ++A       +D   + +L+ G
Sbjct: 67  ALNCGSPLPDWADLYPANWKLAKEEARQRVLGESGVFEELAVELDRTREDYNGNTILIGG 126

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 127 PPCQAYSLVG 136


>gi|331219056|ref|XP_003322205.1| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309301195|gb|EFP77786.1| hypothetical protein PGTG_03742 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1194

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 30/108 (27%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAK-- 58
           ++  +LF GIG + + L +       E  F  + +  + +T   NFP +T+I  D+ +  
Sbjct: 509 IRHLELFGGIGSMSVALIELGLASQDETMF-IDFSIPACQTLSTNFPRSTIICADVNEVL 567

Query: 59  -----------------------IKTQDIP---DHDVLLAGFPCQPFS 80
                                  I+  ++P   D D++ AGFPC   S
Sbjct: 568 ALMINGKTESGQDFLVDQRTGKVIRVNELPRPGDFDLITAGFPCGSHS 615


>gi|228936963|ref|ZP_04099705.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228822678|gb|EEM68568.1| Cytosine-specific methyltransferase [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 326

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ++KI +LF GIG  R  L       + +     E     VK Y A + +     D+    
Sbjct: 3  LIKILELFGGIGAPRKALVNLG--IDYKAIDYVEWQANRVKAYNALYDHLHKPQDVRGWN 60

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
                 D+L+ G PCQ  S+A
Sbjct: 61 L----KPDILVHGSPCQDNSRA 78


>gi|325136051|gb|EGC58661.1| DNA-cytosine methyltransferase [Neisseria meningitidis M0579]
 gi|325202478|gb|ADY97932.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          M01-240149]
          Length = 351

 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 15/88 (17%)

Query: 5  TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK- 60
            LF   GI       E   ++  ++   ++E+ P     Y+A +P   +I GDI   + 
Sbjct: 4  ASLFSSAGI------AETYLHNAGIKIIAANELVPERANLYKALYPESKMIIGDILHEEV 57

Query: 61 ----TQDIPDH-DVLLAGFPCQPFSQAG 83
               Q +P+  D L+A  PCQ  S AG
Sbjct: 58 FQNLIQSVPNRLDFLIASPPCQGMSVAG 85


>gi|254526757|ref|ZP_05138809.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
          9202]
 gi|221538181|gb|EEE40634.1| modification methylase EcoRII [Prochlorococcus marinus str. MIT
          9202]
          Length = 298

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
           T+ IP HDVLLAGFPCQPFS AG
Sbjct: 2  DTKSIPSHDVLLAGFPCQPFSLAG 25


>gi|329962528|ref|ZP_08300509.1| C-5 cytosine-specific DNA methylase [Bacteroides fluxus YIT 12057]
 gi|328529784|gb|EGF56676.1| C-5 cytosine-specific DNA methylase [Bacteroides fluxus YIT 12057]
          Length = 370

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQT--FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           + DLFCG GG+   +E+      R V+       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 21  VIDLFCGAGGLSEGVEEARLNGKRCVKVVCCVNHDKNAILSHDANIPDALHFIEDIRTLE 80

Query: 61  TQDI-----------PDHDVLL-AGFPCQPFSQA 82
              I           PD  V+L A   C  FS+A
Sbjct: 81  LSPINIIVERIRQLYPDVMVMLHASLECTNFSKA 114


>gi|269976808|ref|ZP_06183783.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris 28-1]
 gi|269935005|gb|EEZ91564.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris 28-1]
          Length = 404

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 27 VECFFSSEINPYSVKTYQAN----FPNT----LIFGDIAKIK-TQDIPD--HDVLLAGFP 75
          VE    +E N ++ +T + N    +P      ++ GD+  +    ++     D++ AG P
Sbjct: 24 VEHLAVAEWNRWACETIRENARLDYPLVRGVRVLEGDVRLVDWGSELSRQRIDIITAGPP 83

Query: 76 CQPFSQAG 83
          CQPFS  G
Sbjct: 84 CQPFSLGG 91


>gi|227874774|ref|ZP_03992927.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris ATCC 35243]
 gi|227844549|gb|EEJ54705.1| DNA methyltransferase Cfr42I [Mobiluncus mulieris ATCC 35243]
          Length = 420

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)

Query: 27  VECFFSSEINPYSVKTYQAN----FPNT----LIFGDIAKIK-TQDIPD--HDVLLAGFP 75
           VE    +E N ++ +T + N    +P      ++ GD+  +    ++     D++ AG P
Sbjct: 40  VEHLAVAEWNRWACETIRENARLDYPLVRGVRVLEGDVRLVDWGSELSRQRIDIITAGPP 99

Query: 76  CQPFSQAG 83
           CQPFS  G
Sbjct: 100 CQPFSLGG 107


>gi|14573297|gb|AAK68035.1| DNA methyltransferase 2c [Homo sapiens]
          Length = 115

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQDIP--DHDVLLAGFPCQPFSQ 81
          +   + ++N  + + Y+ NFP+T +    I  I  ++      D++L   PCQPF++
Sbjct: 10 QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTR 66


>gi|301513727|ref|ZP_07238964.1| DNA-cytosine methyltransferase [Acinetobacter baumannii AB058]
          Length = 53

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIA 57
          +K+ D F G GG    L Q      ++     + +  + +TYQANFP  L +  DI 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDITIGLDFDIKAAETYQANFPEALFYNVDIR 53


>gi|302836690|ref|XP_002949905.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
 gi|300264814|gb|EFJ49008.1| maintenance DNA methyltransferase [Volvox carteri f. nagariensis]
          Length = 2277

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   + Q    R     ++ E +  + + Y+ N P+  +F +   +     
Sbjct: 1760 LDIFAGCGGLSEGMHQAGVAR---TRWAIEYDSEAAEAYKLNNPDAKVFCNNCNVLLRAA 1816

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         D+P      +++ G PCQ +S
Sbjct: 1817 MLKAGFEADCLADPTCVEAAAGLDAATLGDLPTPGSVALMMGGPPCQGYS 1866


>gi|120602087|ref|YP_966487.1| C-5 cytosine-specific DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120562316|gb|ABM28060.1| C-5 cytosine-specific DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 659

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          + DLF G GG  L +E            +   +P +V  ++ N P+T  +  D+  +  Q
Sbjct: 14 VVDLFAGGGGASLGIEMA----GCRVHAAVNHDPVAVSLHRENHPDTEHYTQDVFTVSPQ 69

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
           +       +L A   C   S+A
Sbjct: 70 WVTRGRKVGLLWASPDCTHHSKA 92


>gi|89243223|gb|ABD64771.1| Met1 [Volvox carteri f. nagariensis]
          Length = 2262

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
             D+F G GG+   + Q    R     ++ E +  + + Y+ N P+  +F +   +     
Sbjct: 1745 LDIFAGCGGLSEGMHQAGVAR---TRWAIEYDSEAAEAYKLNNPDAKVFCNNCNVLLRAA 1801

Query: 60   --------------------------KTQDIP---DHDVLLAGFPCQPFS 80
                                         D+P      +++ G PCQ +S
Sbjct: 1802 MLKAGFEADCLADPTCVEAAAGLDAATLGDLPTPGSVALMMGGPPCQGYS 1851


>gi|326571789|gb|EGE21795.1| cytosine-specific methyltransferase [Moraxella catarrhalis BC7]
          Length = 55

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41
              DLF GIGG    ++        EC F+SE +  + K
Sbjct: 4  FTFIDLFAGIGGFHFAMQA----VGGECVFASEWDLNAQK 39


>gi|195873685|ref|ZP_02698511.2| DNA-cytosine methyltransferase [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|195632788|gb|EDX51242.1| DNA-cytosine methyltransferase [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
          Length = 382

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 27/101 (26%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG----DIA-- 57
          +   F G+G + +         + +  + +EIN   +  ++    ++ ++G    DI   
Sbjct: 5  VLSFFTGVGLLDMGFRSA----DFDIVWHNEINTDFITGFK--HGHSKLYGVNPQDINLF 58

Query: 58 --------------KIKTQDIPDHDV-LLAGFPCQPFSQAG 83
                         + +  I ++D  ++ G PC  FS AG
Sbjct: 59 EGSIETISKSIVRENVSSGLIDNNDFGIIGGPPCPDFSNAG 99


>gi|164429650|ref|XP_001728555.1| hypothetical protein NCU11205 [Neurospora crassa OR74A]
 gi|157073563|gb|EDO65464.1| hypothetical protein NCU11205 [Neurospora crassa OR74A]
          Length = 654

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDI---A 57
               D F G GG    +     H    C    +   ++V +  ANF        DI    
Sbjct: 93  YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTTYDIDMHN 148

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQA 82
            I  ++I    D+L    PCQ +S A
Sbjct: 149 FIVNKEIRHRVDILHLSPPCQVWSPA 174


>gi|16945407|emb|CAC10091.2| related to cytosine C5-DNA methyltransferase [Neurospora crassa]
          Length = 742

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDI---A 57
               D F G GG    +     H    C    +   ++V +  ANF        DI    
Sbjct: 284 YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTTYDIDMHN 339

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQA 82
            I  ++I    D+L    PCQ +S A
Sbjct: 340 FIVNKEIRHRVDILHLSPPCQVWSPA 365


>gi|20531189|gb|AAM27408.1|AF500227_1 RIP defective [Neurospora crassa]
          Length = 845

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDI---A 57
               D F G GG    +     H    C    +   ++V +  ANF        DI    
Sbjct: 284 YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTTYDIDMHN 339

Query: 58  KIKTQDIPD-HDVLLAGFPCQPFSQA 82
            I  ++I    D+L    PCQ +S A
Sbjct: 340 FIVNKEIRHRVDILHLSPPCQVWSPA 365


>gi|307826333|ref|ZP_07656539.1| C-5 cytosine-specific DNA methylase [Methylobacter tundripaludum
          SV96]
 gi|307732631|gb|EFO03502.1| C-5 cytosine-specific DNA methylase [Methylobacter tundripaludum
          SV96]
          Length = 247

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 21/82 (25%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          ML +  LF GIG +    E         C                  P+ +  GDI K  
Sbjct: 1  ML-VLSLFPGIGLLDRGFEDAGF-----CVV--------------RGPDLIFGGDIRKFT 40

Query: 61 TQDIPDHDVLLAGFPCQPFSQA 82
                 D ++ G PCQ FS+A
Sbjct: 41 VMP-GKFDGVIGGPPCQDFSKA 61


>gi|2887280|emb|CAA05207.1| DNA (cytosine-5)-methyltransferase [Solanum lycopersicum]
          Length = 1559

 Score = 53.6 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 37/113 (32%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
            L   D+F G GG+   L+ +      +  ++ E    +   ++ N P T +F        
Sbjct: 1121 LSTLDIFAGCGGLSEGLQHSGVT---DTNWAIEYEAPAGDAFRLNHPKTKVFIHNCNVIL 1177

Query: 54   -------GD----IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
                   GD    I+  +  ++                  D +  G PCQ FS
Sbjct: 1178 RAVMQKCGDSDDCISTPEASELAAAMDESELNSLPLPGQVDFINGGPPCQGFS 1230


>gi|325685533|gb|EGD27624.1| modification methylase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 395

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI K+   D+PD D+L   FPCQ  S AG
Sbjct: 90  DITKVHATDLPDGDILTYSFPCQDLSIAG 118


>gi|218191946|gb|EEC74373.1| hypothetical protein OsI_09692 [Oryza sativa Indica Group]
          Length = 921

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++   S E +  +    ++ +  T     +   D+
Sbjct: 555 MNVLSLFSGIGGAEVALHRLGIR--MKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADV 612

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + T+ I          D+++ G PC
Sbjct: 613 RHLTTERIETFIRRFGGFDLVIGGSPC 639


>gi|109638623|ref|YP_656628.1| DNA (cytosine-5-)-methyltransferase [Ranid herpesvirus 2]
 gi|109138110|gb|ABG25588.1| ORF120 [Ranid herpesvirus 2]
          Length = 861

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFG--D-- 55
           D FCG GG+ L LEQ+      +  +  + +  ++ T+  N        +  +    D  
Sbjct: 429 DAFCGAGGLSLGLEQSGL---CDVKWGIDTDAAALATFSKNHNFSVCAYHEPLENMLDKV 485

Query: 56  IAKIKTQDIP---DHDVLLAGFPCQPFS 80
           +A  +    P     + L+ G PCQ FS
Sbjct: 486 VADPEQSYYPRPGQVECLVGGPPCQGFS 513


>gi|261414310|gb|ACX83573.1| DNA chromomethylase [Hieracium piloselloides]
          Length = 607

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNT 50
          +++ DL+ G G +   L    N  +V     ++ ++N Y+ ++ + N P T
Sbjct: 37 MRMLDLYSGCGAMSTGLCLGANMADVNLVTRWAVDLNKYACESLKLNHPET 87



 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 214 DVDVITGGPPCQGIS 228


>gi|255588381|ref|XP_002534588.1| cytosine-specific methyltransferase, putative [Ricinus communis]
 gi|223524973|gb|EEF27795.1| cytosine-specific methyltransferase, putative [Ricinus communis]
          Length = 362

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 32/107 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD--IAKI 59
           LK  DLF G       L    +   +E  F+ E +  + +T++ NF   L   D  IA+ 
Sbjct: 13  LKFIDLFAGC----GGLSLGLSLGGLEGQFAIERDAMAFETFKENF---LAARDLPIARF 65

Query: 60  -----------KTQDIPD------------HDVLLAGFPCQPFSQAG 83
                         ++ D             DVL  G PCQ FS AG
Sbjct: 66  AWPQWLALQPWSIDELLDKHGIEVAGLAHQIDVLAGGPPCQGFSFAG 112


>gi|332308313|ref|YP_004436164.1| DNA-cytosine methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175642|gb|AEE24896.1| DNA-cytosine methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 522

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 39/134 (29%), Gaps = 53/134 (39%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQ--ANF---------- 47
           KI DLF G GG+        +       +   S E    + +T +  A F          
Sbjct: 6   KIIDLFSGPGGLSEGFSALKDPNGNSPFKIAISIEKEKSAHRTLKLRAFFRQFGDAVPSE 65

Query: 48  ------------PNTLIF------------------------GD-IAKIKTQDIPDHD-V 69
                       P   ++                         D I     + I + D V
Sbjct: 66  YYEFLKGELGKTPEEQLYKIPKFSEQVSAAESEAQNLELGKDNDLITSKIAKAIGNDDCV 125

Query: 70  LLAGFPCQPFSQAG 83
           L+ G PCQ +S AG
Sbjct: 126 LIGGPPCQAYSLAG 139


>gi|242042531|ref|XP_002468660.1| hypothetical protein SORBIDRAFT_01g049860 [Sorghum bicolor]
 gi|241922514|gb|EER95658.1| hypothetical protein SORBIDRAFT_01g049860 [Sorghum bicolor]
          Length = 740

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++   S E +  +    ++ +  T     +   D+
Sbjct: 618 MNVLSLFSGIGGAEVALHRLGIR--MKTVISVEKSEVNRTILRSWWDQTQTGTLIEINDV 675

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + ++ I          D+++ G PC
Sbjct: 676 QTLTSERIEAYIRRFGGFDLVIGGSPC 702


>gi|169608972|ref|XP_001797905.1| hypothetical protein SNOG_07571 [Phaeosphaeria nodorum SN15]
 gi|160701754|gb|EAT85037.2| hypothetical protein SNOG_07571 [Phaeosphaeria nodorum SN15]
          Length = 403

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 17/90 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L   D+FCG GG     +Q      +   +  + +  +++ Y+ N    L F        
Sbjct: 321 LTFGDVFCGAGGSSQGAKQA----GLSIKWGLDFDDDAIEAYELNHTGALPF----NCSA 372

Query: 62  QDIPD---------HDVLLAGFPCQPFSQA 82
            D P           DV+    PC  FS A
Sbjct: 373 HDFPPEGYTSEQLRVDVVHLSPPCCFFSPA 402


>gi|258568064|ref|XP_002584776.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237906222|gb|EEP80623.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1033

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           L+  +LF G G     LE+      +   ++ E     + TY+AN  ++           
Sbjct: 584 LRALNLFSGGGSFDRGLEEG---TAIRSEWAVEWGLDQMLTYRANHESSHDLKLFRGSVN 640

Query: 54  --------GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
                   GD + +  + +   + +  G PCQ +S A
Sbjct: 641 DYLALALKGDKSDLIAK-LGQVEFISGGSPCQGYSLA 676


>gi|294778769|ref|ZP_06744188.1| C-5 cytosine-specific DNA methylase [Bacteroides vulgatus PC510]
 gi|294447425|gb|EFG16006.1| C-5 cytosine-specific DNA methylase [Bacteroides vulgatus PC510]
          Length = 609

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           + DLFCG GG+   +E      ++  +       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 21  VIDLFCGAGGLSEGVEAARLDGNKCAKVVCCVNHDKNAILSHDANIPDALHFIEDIRTLE 80

Query: 61  TQDI-----------PDHDVLL-AGFPCQPFSQA 82
              I           PD  ++L A   C  FS+A
Sbjct: 81  LSPISTIVERIRQLYPDAMIMLHASLECTNFSKA 114


>gi|239982029|ref|ZP_04704553.1| DNA modification methylase [Streptomyces albus J1074]
 gi|291453880|ref|ZP_06593270.1| C-5 cytosine-specific DNA methylase [Streptomyces albus J1074]
 gi|291356829|gb|EFE83731.1| C-5 cytosine-specific DNA methylase [Streptomyces albus J1074]
          Length = 409

 Score = 53.6 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 37/115 (32%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL---------- 51
           L   ++  G GG  + L       +       EI+P++  T   N               
Sbjct: 7   LTSIEICAGAGGQAVGLHGA----DFRHLALVEIDPHAAATLARNVRKHPQWAWEREHCL 62

Query: 52  -IFGDIAKIKT-QDIP---------------------DHDVLLAGFPCQPFSQAG 83
            I  D+   K  + +P                     D D+L  G PC PFS AG
Sbjct: 63  IINEDVNDFKPLERVPNPVKAQGKAGSPKQAEFLKPGDLDLLAGGVPCPPFSAAG 117


>gi|254884614|ref|ZP_05257324.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
 gi|254837407|gb|EET17716.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 4_3_47FAA]
          Length = 611

 Score = 53.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           + DLFCG GG+   +E+     +R  +       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 21  VIDLFCGAGGLSEGVEEARLDGNRCAKVVCCVNHDKNAILSHDANIPDALHFIEDIRTLE 80

Query: 61  TQDI-----------PDHDVLL-AGFPCQPFSQA 82
              I           PD  ++L A   C  FS+A
Sbjct: 81  LSPISTIVERIRQLYPDAMIMLHASLECTNFSKA 114


>gi|295836816|ref|ZP_06823749.1| modification methylase NaeI [Streptomyces sp. SPB74]
 gi|295826219|gb|EDY44437.2| modification methylase NaeI [Streptomyces sp. SPB74]
          Length = 449

 Score = 53.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFG- 54
           L   ++  G GG  L L       +       E +  +V T ++N      + +    G 
Sbjct: 14  LTSVEICAGAGGQALGLHNAGFGHS----ALVEWDANAVGTLRSNSVRTFGWSSEKAAGL 69

Query: 55  ---DIAKI-KTQDI----------PDHDVLLAGFPCQPFSQAG 83
              D+      +D              D+   G PC PFS AG
Sbjct: 70  RNMDVRDFKNEEDFKALKKAADAGRYIDLFAGGVPCPPFSLAG 112


>gi|57471643|emb|CAI39482.1| tRNA aspartic acid methyltransferase 1 [Homo sapiens]
          Length = 112

 Score = 53.6 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQDIP--DHDVLLAGFPCQPFSQ 81
          +   + ++N  + + Y+ NFP+T +    I  I  ++      D++L   PCQPF++
Sbjct: 7  QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTR 63


>gi|31074171|gb|AAP20556.1| DNA cytosine-5 methyltransferase 2 isoform gamma [Bos taurus]
          Length = 63

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L+  +L+ GIGG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRALELYSGIGGMHQALRESCIPA--QVVAAVDVNTVANEVYKYNFPHTQLL 53


>gi|327356617|gb|EGE85474.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis ATCC
           18188]
          Length = 661

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
               D FCG GG+     Q     N    +  + +  ++ +++ NF + + +  D+A   
Sbjct: 324 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSLSAMDSFRLNFESAIGYTSDVADFL 379

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 380 ANSPAEI-MVDILHFSPPCQTFSPA 403


>gi|261196301|ref|XP_002624554.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis
           SLH14081]
 gi|239587687|gb|EEQ70330.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis
           SLH14081]
          Length = 661

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
               D FCG GG+     Q     N    +  + +  ++ +++ NF + + +  D+A   
Sbjct: 324 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSLSAMDSFRLNFESAIGYTSDVADFL 379

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 380 ANSPAEI-MVDILHFSPPCQTFSPA 403


>gi|237746251|ref|ZP_04576731.1| C-5 cytosine-specific DNA methylase [Oxalobacter formigenes
          HOxBLS]
 gi|229377602|gb|EEO27693.1| C-5 cytosine-specific DNA methylase [Oxalobacter formigenes
          HOxBLS]
          Length = 489

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I DLF G GG    +EQ             +I    +P ++  + AN P T  +  D+ +
Sbjct: 15 IVDLFAGGGGASTGIEQAIGR-------HVDIAINHDPEAIALHAANHPQTKHYCTDVFE 67

Query: 59 IKT---QDIPDHDVLLAGFPCQPFSQA 82
          I      +     +L A   C+ FS+A
Sbjct: 68 IDPVSATNSQPVGLLWASPDCKHFSKA 94


>gi|294789078|ref|ZP_06754317.1| adenine/cytosine DNA methyltransferase [Simonsiella muelleri ATCC
          29453]
 gi|294482819|gb|EFG30507.1| adenine/cytosine DNA methyltransferase [Simonsiella muelleri ATCC
          29453]
          Length = 837

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 25/100 (25%)

Query: 2  LKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGD 55
          L    LF   G+G      +Q       EC  ++E+ P  +   + N    +    I GD
Sbjct: 6  LTYISLFSSAGVGC--YGFKQA----GFECIATNELLPKRLNIQKLNNKCRYETGYIAGD 59

Query: 56 IAKIKTQ-----DIPD--------HDVLLAGFPCQPFSQA 82
          I + +T+     +I           DV++A  PCQ  S A
Sbjct: 60 IQQAETKQAIYAEIEKWHKLGNDKVDVVIATPPCQGMSVA 99


>gi|239614647|gb|EEQ91634.1| C-5 cytosine methyltransferase DmtA [Ajellomyces dermatitidis ER-3]
          Length = 661

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
               D FCG GG+     Q     N    +  + +  ++ +++ NF + + +  D+A   
Sbjct: 324 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSLSAMDSFRLNFESAIGYTSDVADFL 379

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 380 ANSPAEI-MVDILHFSPPCQTFSPA 403


>gi|7671507|emb|CAB89348.1| putative protein [Arabidopsis thaliana]
          Length = 375

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      +    S EI+  +    ++ +  T   G      D
Sbjct: 249 INVLSLFTGIGGGEVALHRL--QIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKD 306

Query: 56  IAKIKTQDIPD-------HDVLLAGFPC 76
           + K+    I          D+++ G PC
Sbjct: 307 VQKLDDNTIERLMDEYGGFDLVIGGSPC 334


>gi|42567866|ref|NP_197042.2| DRM1 (domains rearranged methylase 1); DNA
           (cytosine-5-)-methyltransferase [Arabidopsis thaliana]
 gi|257096638|sp|Q9LXE5|DRM1_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase DRM1; AltName:
           Full=Protein DOMAINS REARRANGED METHYLASE 1
 gi|332004771|gb|AED92154.1| DNA (cytosine-5)-methyltransferase DRM1 [Arabidopsis thaliana]
          Length = 624

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      +    S EI+  +    ++ +  T   G      D
Sbjct: 498 INVLSLFTGIGGGEVALHRL--QIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKD 555

Query: 56  IAKIKTQDIPD-------HDVLLAGFPC 76
           + K+    I          D+++ G PC
Sbjct: 556 VQKLDDNTIERLMDEYGGFDLVIGGSPC 583


>gi|213622824|ref|ZP_03375607.1| DNA cytosine methylase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 324

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/22 (86%), Positives = 19/22 (86%)

Query: 62 QDIPDHDVLLAGFPCQPFSQAG 83
          Q IP HDVLLAGFPCQPFS AG
Sbjct: 15 QHIPQHDVLLAGFPCQPFSLAG 36


>gi|229824476|ref|ZP_04450545.1| hypothetical protein GCWU000282_01799 [Catonella morbi ATCC 51271]
 gi|229786077|gb|EEP22191.1| hypothetical protein GCWU000282_01799 [Catonella morbi ATCC 51271]
          Length = 414

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI KI  QD+P+ D+L   FPCQ  S +G
Sbjct: 107 DITKIHAQDLPEADILTYSFPCQDLSISG 135


>gi|29467228|dbj|BAC67060.1| DNA methyltransferase [Nicotiana tabacum]
          Length = 608

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTY--QAN-FPNTLIFGDIA 57
           + +  LF GIGG  + L +     N       SE+N   V+++  Q N   N + F D+ 
Sbjct: 482 INVLSLFSGIGGGEVALYRLGIPLNTVVSVEKSEVNRDIVRSWWEQTNQRGNLIHFNDVQ 541

Query: 58  KIK-------TQDIPDHDVLLAGFPC 76
           ++         +     D+++ G PC
Sbjct: 542 QLNGDRLEQLIESFGGFDLVIGGSPC 567


>gi|7573311|emb|CAB87629.1| putative protein [Arabidopsis thaliana]
          Length = 413

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
           + +  LF GIGG  + L +      ++   S EI+  +    +  +  T      + F D
Sbjct: 289 INVLSLFTGIGGGEVALHRL--QIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSD 346

Query: 56  IAKIKTQDIP-------DHDVLLAGFPC 76
           I  +    I          D+++ G PC
Sbjct: 347 IQHLTNDTIEGLMEKYGGFDLVIGGSPC 374


>gi|242052551|ref|XP_002455421.1| hypothetical protein SORBIDRAFT_03g010500 [Sorghum bicolor]
 gi|241927396|gb|EES00541.1| hypothetical protein SORBIDRAFT_03g010500 [Sorghum bicolor]
          Length = 608

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++   S E +  +    ++ +  T     +   D+
Sbjct: 485 MNVLSLFSGIGGAEVALHRLGIR--MKTVISVEKSEVNRTILKSWWDQTQTGLLIEICDV 542

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + ++ I          D+++ G PC
Sbjct: 543 QTLTSERIEAYVRRIGGFDLVIGGSPC 569


>gi|126540951|emb|CAM46948.1| DNA (cytosine-5-)-methyltransferase 3 [Danio rerio]
          Length = 1448

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD- 55
            +++  LF GI  G +    L  +       VE + +SEI+  S+     N    +   D 
Sbjct: 1164 IRVLSLFDGIATGYLVLRDLGFK-------VEKYVASEIDEESITISMVNHDGKITQVDD 1216

Query: 56   ---IAKIKTQDIPDHDVLLAGFPCQPFSQ 81
               I K   +     D+L+ G PC   S 
Sbjct: 1217 VKNITKKHIEQWGPFDLLIGGSPCNDLSI 1245


>gi|159461700|gb|ABW96889.1| CMT-type DNA-methyltransferase [Elaeis guineensis]
          Length = 925

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           L + DL+ G G +   L    N   +  E  ++ +INPY+ ++ + N P+T     +   
Sbjct: 351 LSLLDLYSGCGAMSTGLCLGANLSGLKLETRWAVDINPYACESLKLNHPHTE----VRNE 406

Query: 60  KTQDI 64
           K +D 
Sbjct: 407 KAEDF 411



 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 66  DHDVLLAGFPCQPFS 80
             DV+  G PCQ  S
Sbjct: 528 KVDVICGGPPCQGIS 542


>gi|300689724|ref|YP_003750719.1| DNA (cytosine-5-)-methyltransferase [Ralstonia solanacearum PSI07]
 gi|299076784|emb|CBJ49392.1| putative DNA (cytosine-5-)-methyltransferase [Ralstonia
           solanacearum PSI07]
          Length = 540

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTY---------------QA 45
           I DLF G GG+        +H+     E   S E +P + +T                + 
Sbjct: 5   IIDLFAGPGGLGEGFASLSDHKGRSFFEIGLSIEKDPVAHRTLTLRAVFRHLRGTKDVKH 64

Query: 46  NFP---NTLIFGDIAKIKTQ--------------DIPDHD------------------VL 70
            +      +   D  +I                 ++   D                  VL
Sbjct: 65  YYDYIRGHVSEADFRRIPAVAKAFAHATKEARCLELGKSDENSIDSEIRAALKGQETWVL 124

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S AG
Sbjct: 125 VGGPPCQAYSLAG 137


>gi|190337984|gb|AAI62467.1| DNA (cytosine-5-)-methyltransferase 3 [Danio rerio]
          Length = 1448

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD- 55
            +++  LF GI  G +    L  +       VE + +SEI+  S+     N    +   D 
Sbjct: 1164 IRVLSLFDGIATGYLVLRDLGFK-------VEKYVASEIDEESITISMVNHDGKITQVDD 1216

Query: 56   ---IAKIKTQDIPDHDVLLAGFPCQPFSQ 81
               I K   +     D+L+ G PC   S 
Sbjct: 1217 VKNITKKHIEQWGPFDLLIGGSPCNDLSI 1245


>gi|62719324|ref|NP_571461.1| DNA (cytosine-5-)-methyltransferase 3 [Danio rerio]
 gi|62433259|dbj|BAD95477.1| DNA methyltransferase [Danio rerio]
          Length = 1448

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD- 55
            +++  LF GI  G +    L  +       VE + +SEI+  S+     N    +   D 
Sbjct: 1164 IRVLSLFDGIATGYLVLRDLGFK-------VEKYVASEIDEESITISMVNHDGKITQVDD 1216

Query: 56   ---IAKIKTQDIPDHDVLLAGFPCQPFSQ 81
               I K   +     D+L+ G PC   S 
Sbjct: 1217 VKNITKKHIEQWGPFDLLIGGSPCNDLSI 1245


>gi|38505857|ref|NP_942475.1| hypothetical protein ssr6032 [Synechocystis sp. PCC 6803]
 gi|38423881|dbj|BAD02089.1| ssr6032 [Synechocystis sp. PCC 6803]
          Length = 72

 Score = 53.2 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          LK  DLF G GG  L  EQT     ++     EI+P      Q ++P
Sbjct: 10 LKHLDLFAGCGGFTLAAEQTRGK--IQTTQFVEIDPDCHTILQHHWP 54


>gi|145294975|ref|YP_001137796.1| hypothetical protein cgR_0920 [Corynebacterium glutamicum R]
 gi|140844895|dbj|BAF53894.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 331

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 32 SSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI--------PDHDVLLAGFPCQPFSQA 82
          + E +P  + T++ NFP T+ F  D+  +  ++I         D   ++ G PCQ FS  
Sbjct: 4  AVEFDPVHMATHEYNFPETVSFARDVQTLSGEEILVGTGLKGEDIHAVVGGAPCQGFSMI 63

Query: 83 G 83
          G
Sbjct: 64 G 64


>gi|30684984|ref|NP_196966.2| DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2); N-methyltransferase
           [Arabidopsis thaliana]
 gi|75184795|sp|Q9M548|DRM2_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase DRM2; AltName:
           Full=Protein DOMAINS REARRANGED METHYLASE 2
 gi|7658293|gb|AAF66129.1|AF240695_1 cytosine methyltransferase [Arabidopsis thaliana]
 gi|51970418|dbj|BAD43901.1| putative protein [Arabidopsis thaliana]
 gi|62319261|dbj|BAD94486.1| putative protein [Arabidopsis thaliana]
 gi|110738276|dbj|BAF01067.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004673|gb|AED92056.1| DNA (cytosine-5)-methyltransferase DRM2 [Arabidopsis thaliana]
          Length = 626

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
           + +  LF GIGG  + L +      ++   S EI+  +    +  +  T      + F D
Sbjct: 502 INVLSLFTGIGGGEVALHRL--QIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSD 559

Query: 56  IAKIKTQDIP-------DHDVLLAGFPC 76
           I  +    I          D+++ G PC
Sbjct: 560 IQHLTNDTIEGLMEKYGGFDLVIGGSPC 587


>gi|154277578|ref|XP_001539629.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413214|gb|EDN08597.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 699

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+     Q     N    +  + +  ++ +++ NF   + +  D+A   
Sbjct: 323 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSVSAMDSFRLNFETAIGYTSDVADFL 378

Query: 61  TQ---DIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 379 ANSHTEI-MVDILHFSPPCQTFSPA 402


>gi|225430208|ref|XP_002282454.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1239

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ + + GIGG+R  L++     N +   + +IN  +   YQ NF +          K  
Sbjct: 15 RVLEFYSGIGGMRYSLKRGG--VNAKIVEAFDINNIANDVYQHNFGHRPCQTSDTHEKMI 72

Query: 63 DI 64
          +I
Sbjct: 73 EI 74


>gi|86749313|ref|YP_485809.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86572341|gb|ABD06898.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 358

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG  G+ L L        ++     +++P     ++ N     +  D++ +  + +
Sbjct: 17 VDLFCGAAGLSLGL----KISGIKVAAGIDLDPACRFPFETNIGAMFVEADVSSLSGKAV 72

Query: 65 PDH--D----VLLAGFPCQPFS 80
               D    VL    PCQPFS
Sbjct: 73 DSLFGDASIRVLAGCAPCQPFS 94


>gi|254416032|ref|ZP_05029788.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177207|gb|EDX72215.1| C-5 cytosine-specific DNA methylase superfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 398

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 25  RNVECFFSSEINPYSVKTYQANFPNTLIFG----DIAKIKTQDIPD-HDVLLAGFPCQPF 79
                  S +I P S  T +   P   +FG    D+ ++  ++     D++  G PCQPF
Sbjct: 84  AGFTHVASYDILPESGITLRNVRPEWTVFGGEQGDVTQVDWREYRGLVDIIHGGPPCQPF 143

Query: 80  SQAG 83
           S AG
Sbjct: 144 SVAG 147


>gi|207108548|ref|ZP_03242710.1| type II DNA modification enzyme [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 171

 Score = 52.8 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 53 FGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          FGD+ +I   D+PD D L++GFPCQ FS  G
Sbjct: 5  FGDLMRINPNDLPDFDALISGFPCQAFSING 35


>gi|194861352|ref|XP_001969765.1| GG23765 [Drosophila erecta]
 gi|190661632|gb|EDV58824.1| GG23765 [Drosophila erecta]
          Length = 331

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVL 70
          +    +      + E   + ++N  +   Y  N+ N L+   +I  +  +++     +VL
Sbjct: 1  MHYAFKYA--QLDGEIVAALDVNTVANAVYAHNYGNNLVKTRNIQSLSAKEVNKLQANVL 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP+++ G
Sbjct: 59 LMSPPCQPYTRQG 71


>gi|297811595|ref|XP_002873681.1| hypothetical protein ARALYDRAFT_488304 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319518|gb|EFH49940.1| hypothetical protein ARALYDRAFT_488304 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 629

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGD 55
           + +  LF GIGG  + L +      ++   S EI+  +    +  +  T      + F D
Sbjct: 505 INVLSLFTGIGGGEVALHRL--QIRMKLVVSVEISKVNRNILKDFWEQTNQTGVLIEFSD 562

Query: 56  IAKIKTQDIP-------DHDVLLAGFPC 76
           I  +    I          D+++ G PC
Sbjct: 563 IQHLTNDTIEGLMEKYGGFDLVIGGSPC 590


>gi|89901847|ref|YP_524318.1| DNA-cytosine methyltransferase [Rhodoferax ferrireducens T118]
 gi|89346584|gb|ABD70787.1| DNA-cytosine methyltransferase [Rhodoferax ferrireducens T118]
          Length = 517

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 42/133 (31%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT--YQANF--------PN- 49
           + DLF G GG+       F+           S E +P + +T   +A F        P+ 
Sbjct: 9   VIDLFAGPGGLCEGFSSIFDETGARRFAVKVSIEKDPVAHRTLLLRAIFRKFAKGKVPDC 68

Query: 50  --TLIFGDIAKIKTQDIPDH-D------------------------------------VL 70
               + G+I + +    PD  D                                    VL
Sbjct: 69  YYEYLRGNITREQFFAHPDIKDAAEHAAKEAKCAELGLTPHAEIDSWISEALGDKTDWVL 128

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S AG
Sbjct: 129 IGGPPCQAYSLAG 141


>gi|240280401|gb|EER43905.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus H143]
          Length = 651

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+     Q     N    +  + +  ++ +++ NF   + +  D+A   
Sbjct: 324 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSVSAMDSFRLNFETAIGYTSDVADFL 379

Query: 61  TQ---DIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 380 ASSHTEI-MVDILHFSPPCQTFSPA 403


>gi|225561042|gb|EEH09323.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus G186AR]
          Length = 650

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+     Q     N    +  + +  ++ +++ NF   + +  D+A   
Sbjct: 323 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSVSAMDSFRLNFETAIGYTSDVADFL 378

Query: 61  TQ---DIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 379 ASSHTEI-MVDILHFSPPCQTFSPA 402


>gi|224137126|ref|XP_002327031.1| DNA methyltransferase [Populus trichocarpa]
 gi|222835346|gb|EEE73781.1| DNA methyltransferase [Populus trichocarpa]
          Length = 245

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDIA 57
           +  LF GIGG  + L +      ++   S EI+       +  +       N +   DI 
Sbjct: 125 MCSLFSGIGGAEVALHRLG--IPLKNVVSVEISVSKRDVIRNWWEQANQKGNLIEITDIQ 182

Query: 58  KIKTQDIP-------DHDVLLAGFPC 76
            I   DI          D+++ G PC
Sbjct: 183 TINGSDIETWIRSFGGFDLVIGGSPC 208


>gi|242041781|ref|XP_002468285.1| hypothetical protein SORBIDRAFT_01g043010 [Sorghum bicolor]
 gi|241922139|gb|EER95283.1| hypothetical protein SORBIDRAFT_01g043010 [Sorghum bicolor]
          Length = 576

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++   S EI+  +    +  +  T     +   D+
Sbjct: 453 MNVLSLFSGIGGAEVALHRL--DIRMKTVVSVEISETNRFVLRTWWNQTQTGTLIEITDV 510

Query: 57  AKIKTQ-------DIPDHDVLLAGFPC 76
             + T+        I   D+++ G PC
Sbjct: 511 QSLTTERLESCIRRIGGFDLVIGGSPC 537


>gi|313158881|gb|EFR58260.1| C-5 cytosine-specific DNA methylase [Alistipes sp. HGB5]
          Length = 582

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLD--LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
             DLFCG GG      L +       +       +  ++ ++ AN P+ L +  DI  ++
Sbjct: 11  YIDLFCGAGGTSTGVHLARHGGDPCAKVIACVNHDANAIASHAANHPDALHYTEDIRTLE 70

Query: 61  T-----------QDIPD-HDVLLAGFPCQPFSQA 82
                       +  PD   VL A   C  FS+A
Sbjct: 71  LGPLAAHAARMRRQYPDAFVVLWASLECTNFSRA 104


>gi|163737542|ref|ZP_02144959.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|161389068|gb|EDQ13420.1| DNA-cytosine methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 570

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 21/91 (23%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT------YQ----ANFPNTLIFGDIA 57
            GIG      E      +    F+SEI  +          Y+     N  + L++ D+ 
Sbjct: 7  CSGIG----APELAAPWVDWR--FASEIEGFPRAVLADRFGYRLPEDHNQGDPLLWSDMT 60

Query: 58 KIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
          +I    + D      D+++AG PCQ FS AG
Sbjct: 61 EITPDLLRDRGVPLPDLVVAGTPCQAFSVAG 91


>gi|294644820|ref|ZP_06722563.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CC 2a]
 gi|292639853|gb|EFF58128.1| C-5 cytosine-specific DNA methylase [Bacteroides ovatus SD CC 2a]
          Length = 487

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
             DLFCG GG    +E       +  +       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 8   YIDLFCGAGGTSTGVESARIDGKQCAKVIACVNHDANAIASHAANHPDALHFTEDIRTLE 67

Query: 61  TQDIPDH------------DVLLAGFPCQPFSQA 82
              + +H             VL A   C  FS+A
Sbjct: 68  LSPLIEHLAKCKAQYPGAAVVLWASLECTNFSKA 101


>gi|21225136|ref|NP_630915.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|6900913|emb|CAB71857.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 423

 Score = 52.8 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG      +  +   +      E + ++ KT +A      I  D+A+     
Sbjct: 2  ILDLFAGPGGWS----RAVHVLGMRDIGL-EWDQWACKT-RAAAGQLTIRCDVARYPAWP 55

Query: 64 -IPDHDVLLAGFPCQPFSQAG 83
           I     ++A  PCQ +S AG
Sbjct: 56 FIGRTRGVIASPPCQAWSMAG 76


>gi|297737359|emb|CBI26560.3| unnamed protein product [Vitis vinifera]
          Length = 847

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + D++ G GG+   L        V+    ++ +IN  + ++ + N P T     I     
Sbjct: 280 LLDIYSGCGGMSTGLCLGAKLSGVDLVTRWALDINKSACESLKLNHPETQ----IRNESA 335

Query: 62  QDIPD 66
           +D  D
Sbjct: 336 EDFLD 340



 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 454 DADVICGGPPCQGIS 468


>gi|225454840|ref|XP_002274960.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1143

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + D++ G GG+   L        V+    ++ +IN  + ++ + N P T     I     
Sbjct: 576 LLDIYSGCGGMSTGLCLGAKLSGVDLVTRWALDINKSACESLKLNHPETQ----IRNESA 631

Query: 62  QDIPD 66
           +D  D
Sbjct: 632 EDFLD 636



 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 750 DADVICGGPPCQGIS 764


>gi|326794216|ref|YP_004312036.1| DNA-cytosine methyltransferase [Marinomonas mediterranea MMB-1]
 gi|326544980|gb|ADZ90200.1| DNA-cytosine methyltransferase [Marinomonas mediterranea MMB-1]
          Length = 383

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPN---TLIFGD 55
           I   F G+G + L  E++      +  F +E        Y+      N P        G 
Sbjct: 18  IFSFFAGVGFLDLGFERS----GFDIRFVNEFYKPFYDAYKYSRQKMNQPEPLYEHHLGS 73

Query: 56  IAKI--KTQDIP--------DHDVL---LAGFPCQPFSQAG 83
           I +     Q I           D L   + G PC  FS AG
Sbjct: 74  IDEFLAGPQKIRLKQYLIDAKKDGLVGFIGGPPCPDFSVAG 114


>gi|255579031|ref|XP_002530367.1| protein with unknown function [Ricinus communis]
 gi|223530114|gb|EEF32028.1| protein with unknown function [Ricinus communis]
          Length = 845

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +   L    +   V+    ++ +IN ++ K+ + N P T +  
Sbjct: 277 LLDLYSGCGAMSTGLCMGASLSGVKLVTKWAVDINAFACKSLKTNHPETEVRN 329



 Score = 35.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 66  DHDVLLAGFPCQPFS 80
           D D +  G PCQ  S
Sbjct: 460 DADFICGGPPCQGIS 474


>gi|37039880|gb|AAM96952.1| DNA cytosine-5-methyltransferase [Prunus persica]
          Length = 1564

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L Q+         ++ E    +   ++ N P +L+F           
Sbjct: 1127 LDIFAGCGGLSNGLRQSGASI---TKWAIEYEEPAGDAFKLNHPESLVFINNCNVILRAV 1183

Query: 54   ----GD----IAKIKT------------QDIP---DHDVLLAGFPCQPFS 80
                GD    IA  +              D+P     D +  G PC+ FS
Sbjct: 1184 MEKCGDTDDCIATSEAAELAASLDEEVKNDLPLPGQVDFINGGPPCRGFS 1233


>gi|303278772|ref|XP_003058679.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459839|gb|EEH57134.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 493

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV----ECFFSSEINPYSVKTYQANFPNTLIFG 54
           LK+ + F G GG+ +  + T     V    E   + +I   +  TY  NFP   +  
Sbjct: 223 LKVLETFAGAGGLHMHGDATHGPSGVAVALESVAAIDIVKDACDTYSHNFPGVNVMH 279



 Score = 33.6 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D  V+  G PCQ +S
Sbjct: 451 DVHVVTGGPPCQGWS 465


>gi|237716196|ref|ZP_04546677.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. D1]
 gi|262407805|ref|ZP_06084353.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 2_1_22]
 gi|294807624|ref|ZP_06766417.1| C-5 cytosine-specific DNA methylase [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229443843|gb|EEO49634.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. D1]
 gi|262354613|gb|EEZ03705.1| C-5 cytosine-specific DNA methylase [Bacteroides sp. 2_1_22]
 gi|294445060|gb|EFG13734.1| C-5 cytosine-specific DNA methylase [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 561

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
             DLFCG GG    +E       +  +       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 8   YIDLFCGAGGTSTGVESARIDGKQCAKVIACVNHDANAIASHAANHPDALHFTEDIRTLE 67

Query: 61  TQDIPDH------------DVLLAGFPCQPFSQA 82
              + +H             VL A   C  FS+A
Sbjct: 68  LSPLIEHLAKCKAQYPGAAVVLWASLECTNFSKA 101


>gi|330960676|gb|EGH60936.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 351

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+   L +T     +      +I+      Y+ N     I   +   K +D+
Sbjct: 7  VDLFCGAGGLTAGLLKT----GISVRAGYDIDRNCEYAYRENNGAEFIAESVELTKIEDL 62

Query: 65 P------DHDVLLAGFPCQPFS 80
                    +L    PCQPFS
Sbjct: 63 SAWYRPQRIKLLAGCAPCQPFS 84


>gi|297686112|ref|XP_002820609.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Pongo
          abelii]
          Length = 63

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLL 53


>gi|221044562|dbj|BAH13958.1| unnamed protein product [Homo sapiens]
          Length = 254

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLL 53


>gi|167887561|gb|ACA05985.1| tRNA aspartic acid methyltransferase 1 variant 7 [Homo sapiens]
          Length = 63

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLL 53


>gi|31874014|emb|CAD97925.1| hypothetical protein [Homo sapiens]
 gi|167887557|gb|ACA05981.1| tRNA aspartic acid methyltransferase 1 variant 8 [Homo sapiens]
          Length = 69

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLL 53


>gi|167887558|gb|ACA05982.1| tRNA aspartic acid methyltransferase 1 variant 5 [Homo sapiens]
          Length = 117

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          L++ +L+ G+GG+   L ++      +   + ++N  + + Y+ NFP+T + 
Sbjct: 4  LRVLELYSGVGGMHHALRESCIPA--QVVAAIDVNTVANEVYKYNFPHTQLL 53


>gi|325096531|gb|EGC49841.1| C-5 cytosine methyltransferase DmtA [Ajellomyces capsulatus H88]
          Length = 651

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
               D FCG GG+     Q     N    +  + +  ++ +++ NF   + +  D+A   
Sbjct: 324 YTFGDGFCGAGGVSRGALQAGLRLN----WGFDHSISAMDSFRLNFETAIGYTSDVADFL 379

Query: 61  TQ---DIPDHDVLLAGFPCQPFSQA 82
                +I   D+L    PCQ FS A
Sbjct: 380 ASSHTEI-MVDILHFSPPCQTFSPA 403


>gi|2865425|gb|AAC02665.1| chromomethylase [Arabidopsis thaliana]
 gi|2865430|gb|AAC02668.1| chromomethylase [Arabidopsis thaliana]
          Length = 560

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|2865420|gb|AAC02662.1| chromomethylase [Arabidopsis thaliana]
          Length = 754

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|2865422|gb|AAC02663.1| chromomethylase [Arabidopsis thaliana]
          Length = 791

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|2865433|gb|AAC02670.1| chromomethylase [Arabidopsis suecica]
          Length = 754

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|2865428|gb|AAC02667.1| chromomethylase [Arabidopsis thaliana]
          Length = 560

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|18412893|ref|NP_565245.1| CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding
           [Arabidopsis thaliana]
 gi|110832797|sp|O49139|CMT1_ARATH RecName: Full=Putative DNA (cytosine-5)-methyltransferase CMT1;
           AltName: Full=Chromomethylase 1; AltName: Full=Protein
           CHROMOMETHYLASE 1
 gi|6503286|gb|AAF14662.1|AC011713_10 Identical to gb|AF039367 ecotype Col-0 chromomethylase (CMT1) gene
           from Arabidopsis thaliana
 gi|2865416|gb|AAC02660.1| chromomethylase [Arabidopsis thaliana]
 gi|332198321|gb|AEE36442.1| putative DNA (cytosine-5)-methyltransferase CMT1 [Arabidopsis
           thaliana]
          Length = 791

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|2766713|gb|AAB95485.1| chromomethylase [Arabidopsis thaliana]
 gi|2865414|gb|AAC02659.1| chromomethylase [Arabidopsis thaliana]
          Length = 791

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 227 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 279


>gi|257419811|ref|ZP_05596805.1| site-specific DNA methylase [Enterococcus faecalis T11]
 gi|257161639|gb|EEU91599.1| site-specific DNA methylase [Enterococcus faecalis T11]
          Length = 380

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANF---PN--TLIFGDIAKIKTQD---IPDHDVL 70
          +Q          +++E +  +V+TY+ N    P+  ++   D+      +   + D D L
Sbjct: 26 DQHNEEWGFVHAWANEYDSDTVETYKLNILKDPDATSVYCQDVRTFDLHNHELLGDIDAL 85

Query: 71 LAGFPCQPFSQAG 83
          + GFPC  +S  G
Sbjct: 86 IFGFPCNDYSLVG 98


>gi|32455595|ref|NP_862078.1| putative modification methylase [Streptomyces lividans]
 gi|28883246|gb|AAO61179.1| putative modification methylase [Streptomyces lividans]
          Length = 426

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 1  MLK------ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--YQANFPN-TL 51
          M +       TDLFCG+GG    L +               N  +V+   ++ N P    
Sbjct: 1  MFRHDGDLDFTDLFCGLGGSTRGLTEAGMRA--RLVM----NHDAVQVAAHRLNHPECEH 54

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  DI     + +P   +L     C   S AG
Sbjct: 55 LVEDINAFDKRSLPRTRILWGSPICTEISPAG 86


>gi|164470590|gb|ABY58121.1| putative DNA cytosine 5-methyltransferase [Solanum lycopersicum]
          Length = 602

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-NHRNVECFFSSEINPYSVKTY--QAN-FPNTLIFGDIA 57
           + +  LF GIGG  + L +      NV     SE+N   V+++  Q N   N + F D+ 
Sbjct: 477 MNVLSLFSGIGGAEVALYRLGIQLNNVVSVEKSEVNRNIVRSWWEQTNQRGNLIDFDDVQ 536

Query: 58  KIKTQDIPD-------HDVLLAGFPC 76
           ++    +          D+L+ G PC
Sbjct: 537 QLNGDRLEQLIDSCGGFDLLIGGSPC 562


>gi|301385608|ref|ZP_07234026.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          Max13]
 gi|302061458|ref|ZP_07252999.1| DNA-cytosine methyltransferase [Pseudomonas syringae pv. tomato
          K40]
 gi|330878700|gb|EGH12849.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 351

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+   L +T     +      +I+      Y+ N     I   +   K +D+
Sbjct: 7  VDLFCGAGGLTAGLLKT----GISVRAGYDIDHNCEYAYRENNGAEFITESVELTKIEDL 62

Query: 65 P------DHDVLLAGFPCQPFS 80
                    +L    PCQPFS
Sbjct: 63 SAWYRPQRIKLLAGCAPCQPFS 84


>gi|170719866|ref|YP_001747554.1| C-5 cytosine-specific DNA methylase [Pseudomonas putida W619]
 gi|169757869|gb|ACA71185.1| C-5 cytosine-specific DNA methylase [Pseudomonas putida W619]
          Length = 350

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
           DLFCG GG+   L +T     +      +I+      Y+ N     +   +   K +D+
Sbjct: 7  VDLFCGAGGLTAGLLKT----GISVRAGYDIDRNCEYAYKTNNGAEFVAESVESAKVRDV 62

Query: 65 --PDHD----VLLAGFPCQPFS 80
               D    +L    PCQPFS
Sbjct: 63 AAWYRDGRVKLLAGCAPCQPFS 84


>gi|265756302|ref|ZP_06090631.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233893|gb|EEZ19502.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 589

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
          + DLFCG GG+   +E+     +R  +       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 1  MIDLFCGAGGLSEGVEEARLDGNRCAKVVCCVNHDKNAILSHDANIPDALHFIEDIRTLE 60

Query: 61 TQDI-----------PDHDVLL-AGFPCQPFSQA 82
             I           PD  ++L A   C  FS+A
Sbjct: 61 LSPISTIVERIRQLYPDAMIMLHASLECTNFSKA 94


>gi|50365120|ref|YP_053545.1| deoxycytosine methylase [Mesoplasma florum L1]
 gi|50363676|gb|AAT75661.1| deoxycytosine methylase [Mesoplasma florum L1]
          Length = 455

 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 39/140 (27%), Gaps = 58/140 (41%)

Query: 2   LKITDLFCGIGGIRLDLE--QTFNHRNVECFFSSEINPYSVKTYQANF------------ 47
           +K+ + F GIG     L+  +  N+ N E   +SE + ++   Y A              
Sbjct: 4   IKVFETFSGIGAQHKALDILKQNNYINYEVVGTSEWDIWANIAYNAIHNKNIDHTKNISE 63

Query: 48  ----------------------------------------PNTLIFGDIAKIKTQDIP-- 65
                                                    N+   G I  +    I   
Sbjct: 64  KEINDFLIKFTHSRDSKTPLTNEQVIKLPIIIKQNLYNSIKNSNNLGSIVGVTGNMISSQ 123

Query: 66  --DHDVLLAGFPCQPFSQAG 83
               D+L   FPCQ  S AG
Sbjct: 124 VGKIDLLTYSFPCQDLSTAG 143


>gi|240280627|gb|EER44131.1| DNA methyltransferase [Ajellomyces capsulatus H143]
 gi|325089115|gb|EGC42425.1| DNA methyltransferase [Ajellomyces capsulatus H88]
          Length = 1234

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  ++F G G     L++      +E  ++ E +   + TY+AN  N     L  G + 
Sbjct: 660 LRALNIFSGGGSFDRGLQEGGA---IENKWAVEWSHVPMLTYRANHDNPEKIHLFLGSVN 716

Query: 58  KIKTQ-------------DIPDHDVLLAGFPCQPFS 80
               Q              + D   + AG PCQ +S
Sbjct: 717 DFLLQALQGEAKASNLVAKLGDVGFISAGSPCQGYS 752


>gi|226088548|dbj|BAH37019.1| chromomethylase OsMET2a [Oryza sativa Japonica Group]
          Length = 907

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L         N+E  ++ + N ++ ++ + N P T +  
Sbjct: 336 TLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRN 389



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 503 DVDVICGGPPCQGIS 517


>gi|225560828|gb|EEH09109.1| DNA methyltransferase Dim-2 [Ajellomyces capsulatus G186AR]
          Length = 1236

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  ++F G G     L++      +E  ++ E +   + TY+AN  N     L  G + 
Sbjct: 660 LRALNIFSGGGSFDRGLQEGGA---IENKWAVEWSHVPMLTYRANHDNPEKIHLFLGSVN 716

Query: 58  KIKTQ-------------DIPDHDVLLAGFPCQPFS 80
               Q              + D   + AG PCQ +S
Sbjct: 717 DFLLQALQGEAKASNLVAKLGDVGFISAGSPCQGYS 752


>gi|222612319|gb|EEE50451.1| hypothetical protein OsJ_30466 [Oryza sativa Japonica Group]
          Length = 907

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L         N+E  ++ + N ++ ++ + N P T +  
Sbjct: 336 TLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRN 389



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 503 DVDVICGGPPCQGIS 517


>gi|218188370|gb|EEC70797.1| hypothetical protein OsI_02246 [Oryza sativa Indica Group]
          Length = 907

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L         N+E  ++ + N ++ ++ + N P T +  
Sbjct: 336 TLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRN 389



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 503 DVDVICGGPPCQGIS 517


>gi|147903096|ref|NP_001079673.1| tRNA aspartic acid methyltransferase 1 [Xenopus laevis]
 gi|111185513|gb|AAH46854.2| MGC53207 protein [Xenopus laevis]
          Length = 382

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 36 NPYSVKTYQANFPNTLIF-GDIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          N  + K Y+ NFP+T ++   I  I  +++     D++L   PCQPF++ G
Sbjct: 21 NTNANKVYKYNFPHTPLWPKTIEGITLKELDALSFDMILMSPPCQPFTRIG 71


>gi|18542936|gb|AAL75761.1| Putative DNA cytosine methyltransferase MET2a [Oryza sativa
           Japonica Group]
          Length = 719

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L         N+E  ++ + N ++ ++ + N P T +  
Sbjct: 314 TLLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRTEVRN 367



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 481 DVDVICGGPPCQGIS 495


>gi|163848465|ref|YP_001636509.1| C-5 cytosine-specific DNA methylase [Chloroflexus aurantiacus
          J-10-fl]
 gi|222526394|ref|YP_002570865.1| C-5 cytosine-specific DNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163669754|gb|ABY36120.1| C-5 cytosine-specific DNA methylase [Chloroflexus aurantiacus
          J-10-fl]
 gi|222450273|gb|ACM54539.1| C-5 cytosine-specific DNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 322

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV--KTYQANFPNTLIFG-DIAK 58
          ++  DLFCGIGG                  ++  + +++  + +Q NFP    +  D+A 
Sbjct: 4  IRAIDLFCGIGGNSCGARAAGIDI------AAGFDKWALAGQVFQDNFPEARFYNVDLAI 57

Query: 59 IKT-------QDIPDHDVLLAGFPCQPFSQA 82
          +         + I   D++LA   C   S A
Sbjct: 58 LSRRQIHHFHETIGHVDLILASPECTSHSVA 88


>gi|147801053|emb|CAN77849.1| hypothetical protein VITISV_020833 [Vitis vinifera]
          Length = 631

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + D++ G GG+   L        V+    ++ +IN  + ++ + N P T     I     
Sbjct: 532 LLDIYSGCGGMSTGLCLGAKLSGVDLVTRWALDINKSACESLKLNHPETQ----IRNESA 587

Query: 62  QDIPD 66
           +D  D
Sbjct: 588 EDFLD 592


>gi|281338132|gb|EFB13716.1| hypothetical protein PANDA_007177 [Ailuropoda melanoleuca]
          Length = 372

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 29 CFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHD-----VLLAGFPCQPFSQAG 83
             + ++N  + + Y+ NFP+T +      I+   + + D      +L   PCQPF++ G
Sbjct: 10 VVAAIDVNTVANEVYKYNFPHTQLLA--KTIEGITLEEFDKLSFNTILMSPPCQPFTRIG 67


>gi|221067872|ref|ZP_03543977.1| Site-specific DNA methylase-like protein [Comamonas testosteroni
          KF-1]
 gi|220712895|gb|EED68263.1| Site-specific DNA methylase-like protein [Comamonas testosteroni
          KF-1]
          Length = 193

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          + DLF G GG    +EQ             +I    +P +V  + AN P T  F  D+ +
Sbjct: 15 VVDLFAGGGGASTGIEQAIGR-------HVDIAVNHDPEAVSLHTANHPPTRHFCSDVFE 67

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +    + D     +L A   C+ FS+A
Sbjct: 68 VDPLAVTDGQPVGLLWASPDCKHFSKA 94


>gi|54026007|ref|YP_120249.1| hypothetical protein nfa40370 [Nocardia farcinica IFM 10152]
 gi|54017515|dbj|BAD58885.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 592

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
            DLF G GG+   +E            ++    Y V+ ++AN P+   +  IA +     
Sbjct: 24  VDLFSGFGGLTQGIELA----GFTTIMAANHRRYKVEVHEANHPHAEHW--IADLVDPES 77

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
                 +D+P  D+L+AG  C   SQA
Sbjct: 78  ADYHSARDLPAADLLVAGVSCVNHSQA 104


>gi|296393765|ref|YP_003658649.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296180912|gb|ADG97818.1| DNA-cytosine methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 393

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 31 FSSEINPYSVKTYQAN--------FPNTLIFGDIAKIKTQ-DIPDHDVLLAGFPCQPFSQ 81
          F+ E + ++  T   N            ++ GD+  +         D++  G PCQPFS 
Sbjct: 28 FAVERDRWACDTLMQNAASGYPLVRGLKVLRGDVRSVDWSLSSGQVDLVAGGPPCQPFSL 87

Query: 82 AG 83
           G
Sbjct: 88 GG 89


>gi|15644685|ref|NP_206855.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori 26695]
 gi|2313132|gb|AAD07124.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori 26695]
          Length = 823

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
           L    LF G G     L         EC  ++EI    +   + N       + I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGL----LEEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIK 62

Query: 58  KIKTQD-----IP---------DHDVLLAGFPCQPFSQA 82
           K +T++     I            D+++A  PCQ  S A
Sbjct: 63  KPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|302763491|ref|XP_002965167.1| hypothetical protein SELMODRAFT_83383 [Selaginella moellendorffii]
 gi|300167400|gb|EFJ34005.1| hypothetical protein SELMODRAFT_83383 [Selaginella moellendorffii]
          Length = 338

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGD 55
           +++  LF GIGG  + L +             E N  + +  +  +          I  D
Sbjct: 216 IRMLSLFSGIGGAEVALHRAGIKLKF--VVCVESNVDNRRILERWWSTSGQTGQHRILDD 273

Query: 56  IAKIK-------TQDIPDHDVLLAGFPC 76
           +  +         ++    D+++ G PC
Sbjct: 274 VQDLTMAVVARLMEESGGFDLVIGGSPC 301


>gi|1297185|gb|AAA98912.1| theoretical protein with similarity to Swiss-Prot Accession Number
           P34881 DNA (cytosine-5-) methyltransferase [Arabidopsis
           thaliana]
          Length = 620

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+ G G +        +   V+    +S +IN ++  + + N P T +  
Sbjct: 145 LLDLYSGCGAMSTGFCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRN 197


>gi|115470907|ref|NP_001059052.1| Os07g0182900 [Oryza sativa Japonica Group]
 gi|113610588|dbj|BAF20966.1| Os07g0182900 [Oryza sativa Japonica Group]
          Length = 445

 Score = 52.1 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 37/110 (33%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            D+F G GG+   L+Q          ++ E    + + +  N P   +F D   +  + I
Sbjct: 12  LDIFAGCGGLSEGLQQAGVSF---TKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 68

Query: 65  PD----------------------------------HDVLLAGFPCQPFS 80
            D                                   + +  G PCQ FS
Sbjct: 69  MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFS 118


>gi|309776146|ref|ZP_07671137.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916097|gb|EFP61846.1| CPG DNA methylase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 456

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 56/134 (41%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------------FPN-- 49
           + + F G+G     LE+   + +      SEI+  ++ +Y A             FP   
Sbjct: 21  VFETFAGVGAQAKSLERL--NVSHVITGISEIDKDAILSYAAIHCGLNDKVDSYVFPERE 78

Query: 50  ----------------------------------------TLIFGDIAKIKTQDIPDHDV 69
                                                   +   G+I+ I   D+P+ D+
Sbjct: 79  TMIRALQEMDVGFDFKNDRHTITEKTRPAILKKYYLANILSGNLGNISHIHAADLPEVDL 138

Query: 70  LLAGFPCQPFSQAG 83
           L   FPCQ  S+AG
Sbjct: 139 LTYSFPCQDLSKAG 152


>gi|119383017|ref|YP_914073.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
 gi|119372784|gb|ABL68377.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
          Length = 555

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 33/121 (27%), Gaps = 45/121 (37%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----------PNT- 50
           L    +  GI          +     +    SEI P+        F          P+  
Sbjct: 4   LSFLSVCSGI----EAASLAWEPLGWKAIGYSEIEPFPCHVLHHRFGAGRPIFMPAPDEA 59

Query: 51  --------------------------LIFGDIAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
                                       FGD+ +      PD   DVL+ G PCQ +S A
Sbjct: 60  GLSAKDRKARAAAIRAVAKLPEVGRVPNFGDMTQFDR--WPDAAFDVLVGGTPCQDYSVA 117

Query: 83  G 83
           G
Sbjct: 118 G 118


>gi|4894862|gb|AAD32631.1|AF135438_1 de novo DNA methyltransferase 3 [Danio rerio]
          Length = 842

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 2   LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD- 55
           +++  LF GI  G +    L  +       VE + +SEI+  S+     N    +   D 
Sbjct: 558 IRVLSLFDGIATGYLVLRDLGFK-------VEKYVASEIDEESITISMVNHDGKITQVDD 610

Query: 56  ---IAKIKTQDIPDHDVLLAGFPCQPFSQ 81
              I K   +     D+L+ G PC   S 
Sbjct: 611 VKNITKKHMEQWGPFDLLIGGSPCNDLSI 639


>gi|154322765|ref|XP_001560697.1| hypothetical protein BC1G_00725 [Botryotinia fuckeliana B05.10]
 gi|150848059|gb|EDN23252.1| hypothetical protein BC1G_00725 [Botryotinia fuckeliana B05.10]
          Length = 861

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 17/88 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               D +CG GG+            ++  +  + N ++ +T+Q NFP          +  
Sbjct: 546 YTYGDGYCGAGGMTRGAATA----GLKVKWGFDFNAHAGETWQKNFPGATFH----LLPV 597

Query: 62  QDI---PD------HDVLLAGFPCQPFS 80
            +    PD       D+L    PCQ FS
Sbjct: 598 NEFAALPDPRKRLWIDILHLSPPCQVFS 625


>gi|134288503|ref|YP_001110666.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis G4]
 gi|134133153|gb|ABO59863.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis G4]
          Length = 586

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           I DLF G GG+   +E             S+    ++  ++AN P T  F  D+ ++  +
Sbjct: 28  IIDLFSGGGGMSTAIEWALGRSPHIAVNHSD---DALSMHRANHPQTKHFIADVREVCPK 84

Query: 63  DIPD---HDVLLAGFPCQPFSQA 82
           ++ +     +L A   C   SQA
Sbjct: 85  EVTEGRPVGLLHASPDCTHHSQA 107


>gi|162463785|ref|NP_001104978.1| DNA (cytosine-5)-methyltransferase 1 [Zea mays]
 gi|75168496|sp|Q9AXT8|CMT1_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 1; AltName:
           Full=Chromomethylase 1; AltName: Full=DNA cytosine
           methyltransferase MET2a; AltName: Full=Zea
           methyltransferase2; Short=Zmet2
 gi|13021690|gb|AAK11516.1|AF243043_1 DNA cytosine methyltransferase MET2a [Zea mays]
 gi|260749135|gb|ACX48824.1| chromomethylase [Zea mays]
          Length = 912

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L      +   +E  ++ + N ++ ++ + N P T +  
Sbjct: 342 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQTEVRN 395



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 507 DVDVICGGPPCQGIS 521


>gi|242217704|ref|XP_002474649.1| predicted protein [Postia placenta Mad-698-R]
 gi|220726179|gb|EED80137.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1157

 Score = 52.1 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 31/108 (28%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           LK  D F G+G   L LE++     ++   + EI+P + +  Q N P+T+++   + +  
Sbjct: 682 LKAFDPFGGVGAFGLGLEESGC---LKVVQTIEISPSAAQALQENCPHTMVYNQCSNVVL 738

Query: 62  Q----------------------DIPD------HDVLLAGFPCQPFSQ 81
           Q                       +PD       D ++AGFPCQP SQ
Sbjct: 739 QYAIKNHAGHKPQVPRAIGNGQRALPDPPTPGQIDCIIAGFPCQPHSQ 786


>gi|68655470|emb|CAJ01708.1| chromomethylase 1 [Hordeum vulgare subsp. vulgare]
          Length = 735

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 4   ITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + DL+ G GG+   L          +E  ++ ++N ++ K+ + N P T     +   K 
Sbjct: 166 LLDLYSGCGGMSTGLCLGSALAGLKLETKWAVDLNSFACKSLKYNHPKTE----VRNEKA 221

Query: 62  QDI 64
           +D 
Sbjct: 222 EDF 224



 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 331 VDVICGGPPCQGIS 344


>gi|226293429|gb|EEH48849.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb18]
          Length = 1311

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  +LF G G     LE+    RN    ++ E     + TY+AN  +     L  G + 
Sbjct: 735 LRALNLFSGGGSFDRGLEEGGAIRNE---WAVEWELAPMLTYRANQHDPERVKLFLGSVN 791

Query: 58  KI-------KTQD------IPDHDVLLAGFPCQPFS 80
                    K++D      + D + + AG PCQ +S
Sbjct: 792 DFLLRAFQGKSEDNNLVAKLGDVEFISAGSPCQGYS 827


>gi|233770214|gb|ACQ91180.1| DRM-type cytosine DNA-methyltransferase [Fragaria x ananassa]
 gi|233770218|gb|ACQ91182.1| DRM-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 596

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      ++   S EI+  S    +  +  T   G      D
Sbjct: 471 INLLSLFSGIGGAEIALHRLGIR--MKNVVSVEISAVSRTVVRTWWEQTNQKGNLYHLAD 528

Query: 56  IAKIKTQ-------DIPDHDVLLAGFPC 76
           + ++               D+++ G PC
Sbjct: 529 VQELNADRLEHYINTFGGFDLVVGGSPC 556


>gi|213156207|ref|YP_002318627.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          AB0057]
 gi|301346662|ref|ZP_07227403.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          AB056]
 gi|301596880|ref|ZP_07241888.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          AB059]
 gi|332852721|ref|ZP_08434355.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          6013150]
 gi|332871075|ref|ZP_08439688.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          6013113]
 gi|213055367|gb|ACJ40269.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          AB0057]
 gi|332729074|gb|EGJ60422.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          6013150]
 gi|332731835|gb|EGJ63115.1| C-5 cytosine-specific DNA methylase [Acinetobacter baumannii
          6013113]
          Length = 492

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I D F G GG    LE+ F           +I    +P ++  ++AN PNT  F  D+  
Sbjct: 15 IVDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPKAIAMHRANHPNTRHFCEDVWD 67

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +    + +     ++     C+ FS+A
Sbjct: 68 VDPVKVTNNQPVGLVWLSPDCKHFSKA 94


>gi|126293841|ref|XP_001362485.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase 3 beta
           [Monodelphis domestica]
          Length = 756

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++     +     +SEI   S+      ++ N        +I 
Sbjct: 478 IRVLSLFDGIATGYLVLKELGIKVDKYI--ASEICEDSIAVGTVKHEGNIKYVHDVRNIT 535

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K +  +    D+L+ G PC   S
Sbjct: 536 KRQIDEWGPFDLLIGGSPCNDLS 558


>gi|315222621|ref|ZP_07864510.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
 gi|315188307|gb|EFU22033.1| DNA (cytosine-5-)-methyltransferase [Streptococcus anginosus F0211]
          Length = 417

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 48/128 (37%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY----------QAN---- 46
           ML I D+F G GG+     +  ++ N  C    E++  +  +           + N    
Sbjct: 1   MLNIVDVFSGAGGLTEGF-RYKDYYNFIC--HIEMDKDACSSLELRNIYYYLKKENNLSP 57

Query: 47  -FP-----------NTLIFGDIAK------IKTQDIPDH-------------DVLLAGFP 75
            F             ++I  D+ K      I    IP               D ++ G P
Sbjct: 58  YFEYIQGKISRDDLYSIIPRDLTKDILNKEISKDTIPSIFEFIDQRLGNNKLDGIIGGPP 117

Query: 76  CQPFSQAG 83
           CQ +S  G
Sbjct: 118 CQAYSTIG 125


>gi|159041947|ref|YP_001541199.1| DNA-cytosine methyltransferase [Caldivirga maquilingensis IC-167]
 gi|157920782|gb|ABW02209.1| DNA-cytosine methyltransferase [Caldivirga maquilingensis IC-167]
          Length = 309

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDI 64
          DLF G GG  +           E     +I+  SV+++  NFP  + I  D   ++  DI
Sbjct: 2  DLFSGAGGFSVGFRDA----GFEVVAGLDIDIDSVRSFSINFPKAVTIREDARLVRGSDI 57


>gi|283379280|dbj|BAI66066.1| DNA metyltransferase [Oryza sativa Japonica Group]
          Length = 189

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++     EI+  ++   ++ +  T     +   D+
Sbjct: 74  MNVLSLFSGIGGAEVALHRLGIC--MKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADV 131

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             +  + I          D+++ G PC
Sbjct: 132 QNLTAERIELFIRRFGGFDLVIGGSPC 158


>gi|290999391|ref|XP_002682263.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
 gi|284095890|gb|EFC49519.1| cytosine-5 DNA methyltransferase [Naegleria gruberi]
          Length = 1527

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
           +   D+F G GG+ L LE+      +   +S E    +  T+   F +   F
Sbjct: 887 ITALDIFSGCGGLSLGLERA----GIHVKYSIEFWKPAADTHHYYFKDCHTF 934



 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 60   KTQDIP---DHDVLLAGFPCQPFSQ 81
            K  +IP   + D++  G PCQ FS 
Sbjct: 1019 KYANIPAPDEIDLIAGGPPCQGFSL 1043


>gi|154504856|ref|ZP_02041594.1| hypothetical protein RUMGNA_02366 [Ruminococcus gnavus ATCC 29149]
 gi|153794739|gb|EDN77159.1| hypothetical protein RUMGNA_02366 [Ruminococcus gnavus ATCC 29149]
          Length = 369

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------F 53
           LKI   F G G + L  E        +  F +E +P  +K Y+ +     +         
Sbjct: 7   LKIFSFFSGSGFLDLGFE----TNGFDIEFVNEFHPAFMKAYKYSREKMGLKSPTYGYFN 62

Query: 54  GDIAKIKTQDIPDHDVL-------------LAGFPCQPFSQAG 83
           GD+ +       D                 + G PC  FS AG
Sbjct: 63  GDVNEFLENKKDDMHSWMRDAQKDGSLIGFIGGPPCPDFSIAG 105


>gi|289657684|gb|ADD14583.1| DNA methyltransferase 3B [Anolis carolinensis]
          Length = 852

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L        VE + +SEI   S+      ++ N        +I 
Sbjct: 574 IRVLSLFDGIATGYLVLRDLGIK--VEKYVASEICEESIAVGTVRHEGNITYVHDVRNIT 631

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQ 81
           K    +    D+++ G PC   S 
Sbjct: 632 KRNIDEWGPFDLVIGGSPCNDLSI 655


>gi|313678987|ref|YP_004056726.1| c-5 cytosine-specific DNA methylase [Oceanithermus profundus DSM
          14977]
 gi|313151702|gb|ADR35553.1| C-5 cytosine-specific DNA methylase [Oceanithermus profundus DSM
          14977]
          Length = 322

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          +++ DL+ G+GGI     Q  F+   +      +INP S   ++ N    +I  D+   +
Sbjct: 1  MRVIDLYAGMGGISWGFSQEGFHVTGL------DINPLSPDIFELNGIGKVIVTDLRDYQ 54

Query: 61 TQDI-PDHD----VLLAGFPCQPFS 80
           Q++ P       VL+ G  C+P+S
Sbjct: 55 IQNLVPRVREEPLVLVGGPSCRPWS 79


>gi|323516968|gb|ADX91349.1| site-specific DNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|323518452|gb|ADX92833.1| site-specific DNA methylase [Acinetobacter baumannii TCDC-AB0715]
          Length = 492

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I D F G GG    LE+ F           +I    +P ++  ++AN PNT  F  D+  
Sbjct: 15 IVDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPKAIAMHRANHPNTRHFCEDVWD 67

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +    + +     ++     C+ FS+A
Sbjct: 68 VDPVKVTNNQPVGLVWLSPDCKHFSKA 94


>gi|184158530|ref|YP_001846869.1| site-specific DNA methylase [Acinetobacter baumannii ACICU]
 gi|183210124|gb|ACC57522.1| Site-specific DNA methylase [Acinetobacter baumannii ACICU]
          Length = 492

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I D F G GG    LE+ F           +I    +P ++  ++AN PNT  F  D+  
Sbjct: 15 IVDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPKAIAMHRANHPNTRHFCEDVWD 67

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +    + +     ++     C+ FS+A
Sbjct: 68 VDPVKVTNNQPVGLVWLSPDCKHFSKA 94


>gi|308183853|ref|YP_003927986.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308059773|gb|ADO01669.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 822

 Score = 51.7 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 22/99 (22%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
           L    LF G G               EC  ++EI    +   + N       + I GDI 
Sbjct: 7   LTYISLFSGAGVGCYGF----LEEGFECIATNEILEKRLNIQRINRKCKLDESYISGDIK 62

Query: 58  KIKTQD-----IP---------DHDVLLAGFPCQPFSQA 82
           K +T++     I            D+++A  PCQ  S A
Sbjct: 63  KPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVA 101


>gi|260551407|ref|ZP_05825607.1| site-specific DNA methylase [Acinetobacter sp. RUH2624]
 gi|260405570|gb|EEW99062.1| site-specific DNA methylase [Acinetobacter sp. RUH2624]
          Length = 490

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I D F G GG    LE+ F           +I    +P ++  ++AN PNT  F  D+  
Sbjct: 13 IVDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPKAIAMHRANHPNTRHFCEDVWD 65

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +    + +     ++     C+ FS+A
Sbjct: 66 VDPVKVTNNQPVGLVWLSPDCKHFSKA 92


>gi|168204994|ref|ZP_02630999.1| modification methylase DdeI [Clostridium perfringens E str.
          JGS1987]
 gi|168212393|ref|ZP_02638018.1| modification methylase DdeI [Clostridium perfringens CPE str.
          F4969]
 gi|170663374|gb|EDT16057.1| modification methylase DdeI [Clostridium perfringens E str.
          JGS1987]
 gi|170716088|gb|EDT28270.1| modification methylase DdeI [Clostridium perfringens CPE str.
          F4969]
          Length = 436

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44
          + + DLF G GG+     +    +  +     E + ++ +T +
Sbjct: 1  MNVIDLFSGGGGLTEGFVR----QGYKIIAHVEKDRWACETLK 39


>gi|169977330|emb|CAQ18912.1| domains rearranged methyltransferase [Nicotiana sylvestris]
 gi|169977332|emb|CAQ18913.1| domains rearranged methyltransferase [Nicotiana sylvestris]
 gi|169977334|emb|CAQ18914.1| domains rearranged methyltransferase [Nicotiana sylvestris]
 gi|169977336|emb|CAQ18915.1| domains rearranged methyltransferase [Nicotiana sylvestris]
          Length = 608

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTY--QAN-FPNTLIFGDIA 57
           + +  LF GIGG  + L +     N       SE+N   V+++  Q N   N + F D+ 
Sbjct: 482 INVLSLFSGIGGGEVALYRLGIPLNTVVSVEKSEVNRDIVRSWWEQTNQKGNLIHFNDVQ 541

Query: 58  KIK-------TQDIPDHDVLLAGFPC 76
           ++         +     D+++ G PC
Sbjct: 542 QLNGDRLEQLIESFGGFDLVIGGSPC 567


>gi|293570787|ref|ZP_06681836.1| cytosine-specific methyltransferase NlaX [Enterococcus faecium
          E980]
 gi|291609140|gb|EFF38413.1| cytosine-specific methyltransferase NlaX [Enterococcus faecium
          E980]
          Length = 310

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 54 GDIAKIKTQDIPDH---DVLLAGFPCQPFSQAG 83
           DI K+  + I      D++  GFPCQ FS AG
Sbjct: 2  HDITKLSDEFIRGIGRLDIITGGFPCQAFSLAG 34


>gi|154492433|ref|ZP_02032059.1| hypothetical protein PARMER_02067 [Parabacteroides merdae ATCC
          43184]
 gi|154087658|gb|EDN86703.1| hypothetical protein PARMER_02067 [Parabacteroides merdae ATCC
          43184]
          Length = 540

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
            DLFCG GG    +     H     E       +  ++ ++ AN P+ L F  DI  ++
Sbjct: 6  YIDLFCGAGGTSTGVNTARLHGEQCAEVIACVNHDANAIASHAANHPDALHFTEDIRTLE 65

Query: 61 TQDI-----------PDH-DVLLAGFPCQPFSQA 82
             +           PD   VL A   C  FS+A
Sbjct: 66 LSPLVHHLQKCRTKNPDALVVLWASLECTNFSRA 99


>gi|298677086|ref|NP_001177350.1| DNA methyltransferase 3 [Apis mellifera]
 gi|296883331|gb|ADH84015.1| DNA methyltransferase 3 [Apis mellifera]
          Length = 758

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 31  FSSEINPYSVKTYQANFPNTLIF----GDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           ++SEI+  ++    ++F + ++      DI     ++I   D+L+ G PC   S A
Sbjct: 498 YASEIDQDALMVTASHFGDRILQLGNVKDITCNTIKEIAPIDLLIGGSPCNDLSLA 553


>gi|223945129|gb|ACN26648.1| unknown [Zea mays]
          Length = 603

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      +    S E +  +    ++ +  T     +   D+
Sbjct: 480 MNVLSLFSGIGGAEVALHRLG--IQMNTVISVEKSEVNRTILKSWWDQTQTGTLIEITDV 537

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + ++ I          D+++ G PC
Sbjct: 538 QTLSSERIEAYIRRIGGFDLVIGGSPC 564


>gi|2129405|pir||S53867 DNA (cytosine)-methyltransferase (EC 2.1.1.-) Dcm5a -
          Halobacterium salinarum
 gi|732794|emb|CAA56444.1| cytosine methylase [Halobacterium phage phiH]
          Length = 245

 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVEC-----FFSSEINPYSVKTYQANFP--NTLIFGDI 56
          + DLF G GG+   + +     N+E        +      +++T++ N    N      I
Sbjct: 8  VVDLFAGAGGLSTGVAKACEDLNLEPGEDLELHAVNHWKPAIRTHEENHGWANHYHAR-I 66

Query: 57 AKI---KTQDIPDHDVLLAGFPCQPFSQA 82
           ++      D     +L  G  C  FS A
Sbjct: 67 EELYPPNVVDPGSVTLLTGGPECTHFSNA 95


>gi|323447592|gb|EGB03507.1| hypothetical protein AURANDRAFT_67940 [Aureococcus anophagefferens]
          Length = 1523

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--IKTQD 63
           ++F G G +   L+       V    + E +P        N PN   +GDI    I    
Sbjct: 274 EIFAGFGSMSRALQDG----GVSIVATCENDPRKAGALANNLPNVHNYGDIHDDSIVGHV 329

Query: 64  IPDHDV--LLAGFPCQPFSQAG 83
                V  + AG  CQ +S+AG
Sbjct: 330 WNPRSVSAIAAGVECQDYSKAG 351


>gi|260559315|ref|ZP_05831497.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium C68]
 gi|261207983|ref|ZP_05922662.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium TC 6]
 gi|260074675|gb|EEW62995.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium C68]
 gi|260077782|gb|EEW65494.1| C-5 cytosine-specific DNA methylase [Enterococcus faecium TC 6]
          Length = 331

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 54 GDIAKIKTQDIPD---HDVLLAGFPCQPFSQAG 83
           DI  +  + I      D+L  GFPCQ FS AG
Sbjct: 2  HDITSVSDEFIQSLGPVDILCGGFPCQAFSIAG 34


>gi|301621114|ref|XP_002939909.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like [Xenopus
           (Silurana) tropicalis]
          Length = 495

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQT-FNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI 59
           +++  LF GI      L         VE + +SE+   ++   +   P  + + GD+  I
Sbjct: 217 IRVLSLFDGI---ATGLVSLKILKIQVEKYVASEVCKDAINVGKTRHPGEITYVGDVRNI 273

Query: 60  KTQDIPD---HDVLLAGFPCQP 78
             + I +    D+++ G PC  
Sbjct: 274 TRKQISEWGPFDLVIGGSPCND 295


>gi|297727887|ref|NP_001176307.1| Os11g0109200 [Oryza sativa Japonica Group]
 gi|77548342|gb|ABA91139.1| hypothetical protein LOC_Os11g01810 [Oryza sativa Japonica Group]
 gi|255679702|dbj|BAH95035.1| Os11g0109200 [Oryza sativa Japonica Group]
          Length = 473

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++     EI+  ++   ++ +  T     +   D+
Sbjct: 308 MNVLSLFSGIGGAEVALHRLGIC--MKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADV 365

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             +  + I          D+++ G PC
Sbjct: 366 QNLTAERIELFIRRFGGFDLVIGGSPC 392


>gi|284176374|ref|YP_003406650.1| C-5 cytosine-specific DNA methylase [Haloterrigena turkmenica DSM
           5511]
 gi|284018031|gb|ADB63977.1| C-5 cytosine-specific DNA methylase [Haloterrigena turkmenica DSM
           5511]
          Length = 618

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 34/111 (30%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFS-----------------------------SEI 35
            DLF G GG+   L +     + E   +                             +  
Sbjct: 9   VDLFAGAGGLSTGLVKAIIDTHAETIAAETGLSPDDLSSSDTRVHWWLAENVELHAVNHW 68

Query: 36  NPYSVKTYQANFP-NTLIFGDIAKIKTQDI---PDHDVLLAGFPCQPFSQA 82
            P ++ T++ N P        I ++   D+    + D+L+ G  C   S+A
Sbjct: 69  EP-AIATHEQNHPWAEHYHAKIEELHPPDVVEPGEVDLLVGGPSCTHHSRA 118


>gi|156064739|ref|XP_001598291.1| hypothetical protein SS1G_00377 [Sclerotinia sclerotiorum 1980]
 gi|154691239|gb|EDN90977.1| hypothetical protein SS1G_00377 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 789

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 17/90 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
               D +CG GG+ +          ++  +  ++NP++  T+Q NFP      +   +  
Sbjct: 473 YTYGDGYCGAGGMTVGAAAA----GLKVKWGFDLNPHAGLTWQNNFP----LAEFHLLPV 524

Query: 62  QDI---PD------HDVLLAGFPCQPFSQA 82
            +    PD       D+L    PCQ FS A
Sbjct: 525 NEFAALPDPRKNLWVDILHLSPPCQVFSPA 554


>gi|301596944|ref|ZP_07241952.1| DNA-cytosine methyltransferase [Acinetobacter baumannii AB059]
          Length = 50

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          +K+ D F G GG    L Q      ++     + +  + +TYQANFP  L + 
Sbjct: 1  MKVIDFFSGCGGASEGLRQA----GLDITIGLDFDIKAAETYQANFPEALFYN 49


>gi|162463668|ref|NP_001104977.1| hypothetical protein LOC541826 [Zea mays]
 gi|7716575|gb|AAF68437.1| putative DNA cytosine methyltransferase Zmet3 [Zea mays]
          Length = 603

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +     N     S E +  +    ++ +  T     +   D+
Sbjct: 480 MNVLSLFSGIGGAEVALHRLGIRMN--TVISVEKSEVNRTILKSWWDQTQTGTLIEITDV 537

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             + ++ I          D+++ G PC
Sbjct: 538 QTLSSERIEAYIRRIGGFDLVIGGSPC 564


>gi|297380299|gb|ADI35186.1| DNA-cytosine methyltransferase [Helicobacter pylori v225d]
          Length = 264

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
          IK  D+PD DVL++GFPCQ FS  G
Sbjct: 3  IKPNDLPDFDVLISGFPCQAFSING 27


>gi|29376841|ref|NP_815995.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis V583]
 gi|29344306|gb|AAO82065.1| C-5 cytosine-specific DNA methylase [Enterococcus faecalis V583]
          Length = 331

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 55 DIAKIKTQDIPD---HDVLLAGFPCQPFSQAG 83
          DI  +  + I      D+L  GFPCQ FS AG
Sbjct: 3  DITSVSDEFIQSLGPVDILCGGFPCQAFSIAG 34


>gi|154310415|ref|XP_001554539.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
 gi|150851459|gb|EDN26652.1| hypothetical protein BC1G_07127 [Botryotinia fuckeliana B05.10]
          Length = 2323

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 23/89 (25%)

Query: 14  IRLDLEQTFNHRNVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKI-----KTQDI--- 64
               L +  +   +E  FS EI+P + ++Y + NF N  I  DI ++       + I   
Sbjct: 118 FSEGLRKRGHDFRIEHVFSCEIDP-AKQSYIRRNFHNVPILRDITEVFEWEGNPEKIGFM 176

Query: 65  -------------PDHDVLLAGFPCQPFS 80
                           DV++ G  C  +S
Sbjct: 177 TTAFGRTYALPAPGTVDVIIVGTSCTSYS 205


>gi|37693466|dbj|BAC99051.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 1344

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            D+F G GG+   L Q+         ++ E +  + K Y  N P+T +  GD
Sbjct: 732 LDIFAGCGGLSEGLHQSGVSS---TLWAVEFDANAAKAYTENNPHTEVLVGD 780


>gi|20278869|dbj|BAB91073.1| chloroplast-resident DNA methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 1344

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            D+F G GG+   L Q+         ++ E +  + K Y  N P+T +  GD
Sbjct: 732 LDIFAGCGGLSEGLHQSGVSS---TLWAVEFDANAAKAYTENNPHTEVLVGD 780


>gi|121610581|ref|YP_998388.1| C-5 cytosine-specific DNA methylase [Verminephrobacter eiseniae
          EF01-2]
 gi|121555221|gb|ABM59370.1| C-5 cytosine-specific DNA methylase [Verminephrobacter eiseniae
          EF01-2]
          Length = 494

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          + DLF G GG    + Q           +   +P ++  +QAN P T  +  D+ ++   
Sbjct: 15 VIDLFAGGGGASCGIAQAIGRS---VDVAINHDPEAIGLHQANHPQTRHYCADVFEVDPV 71

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
           +       +L A   C+ FS+A
Sbjct: 72 AVTHGRPVGLLWASPDCKHFSKA 94


>gi|94264149|ref|ZP_01287946.1| C-5 cytosine-specific DNA methylase [delta proteobacterium MLMS-1]
 gi|93455407|gb|EAT05605.1| C-5 cytosine-specific DNA methylase [delta proteobacterium MLMS-1]
          Length = 578

 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 52/132 (39%)

Query: 4   ITDLFCGIGGIRLDLE--QTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGD- 55
           + DLF G GG+       +    +      S E +PY+  T +       FP   I  + 
Sbjct: 65  VIDLFAGPGGLAEGFAAFRADEKKPFRIELSVEKDPYAHSTLELRAFFRQFPKNKIPDEY 124

Query: 56  ---IA-------------------------------KIKTQDI--------PDHD--VLL 71
              I                                K+ + +I         D D  +L+
Sbjct: 125 YAYIRQEISKTELFDAWPEESKKAKNEAWLAELGSEKLSSSEIDQRIKNALGDADKWMLI 184

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S  G
Sbjct: 185 GGPPCQAYSTVG 196


>gi|323454936|gb|EGB10805.1| hypothetical protein AURANDRAFT_62303 [Aureococcus anophagefferens]
          Length = 1635

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 18  LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD----HDVLLAG 73
           L + F  R        EI+  +++  +A  P+ L  GD A+++ +++P     + ++  G
Sbjct: 839 LSKAFALRGARIVAVGEIDETALEMLRAEHPDALAMGDTARLEYRNVPWSRHAYRIVCGG 898

Query: 74  FPCQ 77
           FPCQ
Sbjct: 899 FPCQ 902


>gi|323447623|gb|EGB03537.1| hypothetical protein AURANDRAFT_67921 [Aureococcus anophagefferens]
          Length = 675

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 18  LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD----HDVLLAG 73
           L + F  R        EI+  +++  +A  P+ L  GD A+++ +++P     + ++  G
Sbjct: 220 LSKAFALRGARIVAVGEIDETALEMLRAEHPDALAMGDTARLEYRNVPWSRHAYRIVCGG 279

Query: 74  FPCQ 77
           FPCQ
Sbjct: 280 FPCQ 283


>gi|125718611|ref|YP_001035744.1| modification methylase [Streptococcus sanguinis SK36]
 gi|125498528|gb|ABN45194.1| Modification methylase, putative [Streptococcus sanguinis SK36]
          Length = 408

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 55  DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+++ +QD+PD D+L   FPCQ  S +G
Sbjct: 104 DISEVHSQDLPDADILTYSFPCQDLSVSG 132


>gi|284054198|ref|ZP_06384408.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 90

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG  L  +        +     E+   +  TY  N  +            QD
Sbjct: 27 VLDLFAGCGGFSLGFKAA----GFQTIGY-EMLADAAATYTRNLQDPCYCQ--TLEIGQD 79

Query: 64 IPDH-DVLLAG 73
          + +H DV++ G
Sbjct: 80 LCNHPDVIIGG 90


>gi|242087283|ref|XP_002439474.1| hypothetical protein SORBIDRAFT_09g007390 [Sorghum bicolor]
 gi|241944759|gb|EES17904.1| hypothetical protein SORBIDRAFT_09g007390 [Sorghum bicolor]
          Length = 1441

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAK 58
           L + DL+CG GG+   L        V     ++ + +  + +T++ N P T +  +   
Sbjct: 856 LSLLDLYCGCGGMSTGLCLGARGGGVNLVARWAVDGDEVACETFRLNHPETRVRNETTD 914



 Score = 37.4 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 64   IPDHDVLLAGFPCQPFS 80
            + D DV+  G PCQ  S
Sbjct: 1048 LGDVDVICGGPPCQGIS 1064


>gi|145348417|ref|XP_001418645.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578875|gb|ABO96938.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 398

 Score = 51.3 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ +L+ GIG  RL LE       ++   + + +  +   Y+ANF +     ++  +   
Sbjct: 42  RLVELYSGIGATRLALE---PLVTLKSAIAVDNSDAANAVYEANFADAPRRVNVEHLDLN 98

Query: 63  DI------------PDHD-VLLAGFPCQPFSQAG 83
            +              +D VL    PCQP+++ G
Sbjct: 99  ALFASGNGDEGRQGRRNDYVLTVSPPCQPYTRRG 132


>gi|94971290|ref|YP_593338.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553340|gb|ABF43264.1| DNA-cytosine methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 508

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 49/132 (37%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT--YQANF------PN 49
           M+ + DLF G GG+        +           S E +P + KT   ++ F      PN
Sbjct: 1   MIPVIDLFAGPGGLGEGFSALRDDAGRRVFRIGLSIEKDPAAHKTLLLRSFFRQFEIAPN 60

Query: 50  ---TLIFGD--IAKIKTQ---------------DIPDHD------------------VLL 71
              + + G+  I+++                  ++  HD                  VL+
Sbjct: 61  QYYSYVRGELAISQLIEAFPTQYGSAQEEALCVELGKHDWTDIDSRIRRAIGDFKNWVLI 120

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S  G
Sbjct: 121 GGPPCQAYSLVG 132


>gi|295101554|emb|CBK99099.1| Site-specific DNA methylase [Faecalibacterium prausnitzii L2-6]
          Length = 471

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 51 LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          +  GDI KI    I   D +  G PCQ  S AG
Sbjct: 2  IHLGDITKIHGDQIEPVDCITFGSPCQDLSMAG 34



 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN 49
            +  LF GIGG  L  E  +        ++SEI  + +   +  F N
Sbjct: 413 TLGSLFDGIGGFPLVWETAYGA--GTAVWASEIEEFPIAVTKRWFGN 457


>gi|54027658|ref|YP_121899.1| hypothetical protein pnf1100 [Nocardia farcinica IFM 10152]
 gi|54019166|dbj|BAD60535.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 561

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIF-GDIA 57
          ML++ D FCG GG      +        C    ++  +  +++T+  N+P    F GD++
Sbjct: 1  MLELMDWFCGAGGSTQGASKVPGV----CVTRAANHWDK-AIETHATNYPEADHFLGDLS 55

Query: 58 KIKTQ----DIPDHDVLLAGFPCQPFSQA 82
            + +      P  D+  A   C  +S A
Sbjct: 56 TEEAKAQIVKWPVADIFWASPECPQWSSA 84


>gi|332284778|ref|YP_004416689.1| hypothetical protein PT7_1525 [Pusillimonas sp. T7-7]
 gi|330428731|gb|AEC20065.1| hypothetical protein PT7_1525 [Pusillimonas sp. T7-7]
          Length = 112

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIK 60
          +K  DLF G+GG     +Q      V   +++     +V+ + AN P T     D+ +  
Sbjct: 1  MKAIDLFAGLGGNSEGAKQA----GVPVVWAANHWESAVQIHAANHPGTGHACQDLHQAD 56

Query: 61 TQDIPDH 67
             +P H
Sbjct: 57 WTQVPAH 63


>gi|219129968|ref|XP_002185148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403327|gb|EEC43280.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 376

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQT------FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          L+  + F G+GG  + L++        +   + C  + + +   ++ ++ N    +    
Sbjct: 7  LRYVEFFAGVGGWTMALQEAIQIVYPSDPPELFCSAALDHSDLCIEVFEHNHSLVIQKAV 66

Query: 56 -IAKIKTQDIPD--HDVLLAGFPCQPFSQ 81
           I K+    I +   D+ +   PCQP ++
Sbjct: 67 RIEKLTMNQIFEYRADIWMMSPPCQPHTR 95


>gi|218185097|gb|EEC67524.1| hypothetical protein OsI_34820 [Oryza sativa Indica Group]
 gi|222615374|gb|EEE51506.1| hypothetical protein OsJ_32669 [Oryza sativa Japonica Group]
          Length = 477

 Score = 50.9 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +      ++     EI+  ++   ++ +  T     +   D+
Sbjct: 354 MNVLSLFSGIGGAEVALHRLGIC--MKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADV 411

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             +  + I          D+++ G PC
Sbjct: 412 QNLTAERIELFIRRFGGFDLVIGGSPC 438


>gi|224071435|ref|XP_002303458.1| DNA methyltransferase [Populus trichocarpa]
 gi|222840890|gb|EEE78437.1| DNA methyltransferase [Populus trichocarpa]
          Length = 729

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF-----FSSEINPYSVKTYQANFPNTLIFG 54
           L + DLF G GG+   L        V C      ++ + +  + ++ + N P T +  
Sbjct: 171 LTLLDLFSGCGGMSTGL---CLGAKVSCVDLVTRWALDSDESACQSLKLNHPETHVRN 225



 Score = 37.0 bits (86), Expect = 0.87,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 349 DADVICGGPPCQGIS 363


>gi|109946723|ref|YP_663951.1| cytosine specific DNA methyltransferase fragment 1 [Helicobacter
          acinonychis str. Sheeba]
 gi|109713944|emb|CAJ98952.1| cytosine specific DNA methyltransferase fragment 1 [Helicobacter
          acinonychis str. Sheeba]
          Length = 81

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 17/85 (20%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNH---RNVECFFSSEINPYSVKTYQANFPNTL-IFGDIA 57
           KI DLFCG GG R  LE+         ++C         ++ T++ N  N + I GDI 
Sbjct: 3  YKILDLFCGAGGFRARLERLKEFSPLIGLDCG------KQALNTFKNNHKNAMGICGDIT 56

Query: 58 KIKTQD--IP-----DHDVLLAGFP 75
          +   ++  I      + ++++ G P
Sbjct: 57 QADIKEKVIELAKKLEINMIIGGSP 81


>gi|228471480|ref|ZP_04056261.1| C-5 cytosine-specific DNA methylase [Porphyromonas uenonis 60-3]
 gi|228306692|gb|EEK15843.1| C-5 cytosine-specific DNA methylase [Porphyromonas uenonis 60-3]
          Length = 291

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 51 LIFGDIAKIKTQDIPD-HDVLLAGFPCQPFS 80
           I+GDI  +  ++     D+L  GFPCQ FS
Sbjct: 5  PIYGDITSLNGRNFKGAFDILCGGFPCQAFS 35


>gi|110739012|dbj|BAF01425.1| putative chromomethylase [Arabidopsis thaliana]
          Length = 839

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L        +     ++ ++N ++ K+ Q N P T    ++  + 
Sbjct: 270 TLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET----NVRNMT 325

Query: 61  TQDI 64
            +D 
Sbjct: 326 AEDF 329



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 451 VDVVCGGPPCQGIS 464


>gi|14647157|gb|AAK71870.1| chromomethylase 3 [Arabidopsis thaliana]
          Length = 839

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L        +     ++ ++N ++ K+ Q N P T    ++  + 
Sbjct: 270 TLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET----NVRNMT 325

Query: 61  TQDI 64
            +D 
Sbjct: 326 AEDF 329



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 451 VDVVCGGPPCQGIS 464


>gi|14583092|gb|AAK69756.1|AF383170_1 chromomethylase CMT3 [Arabidopsis thaliana]
          Length = 839

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L        +     ++ ++N ++ K+ Q N P T    ++  + 
Sbjct: 270 TLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET----NVRNMT 325

Query: 61  TQDI 64
            +D 
Sbjct: 326 AEDF 329



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 451 VDVVCGGPPCQGIS 464


>gi|15222449|ref|NP_177135.1| CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase
           [Arabidopsis thaliana]
 gi|110832800|sp|Q94F88|CMT3_ARATH RecName: Full=DNA (cytosine-5)-methyltransferase CMT3; AltName:
           Full=Chromomethylase 3; AltName: Full=Protein
           CHROMOMETHYLASE 3
 gi|12325192|gb|AAG52543.1|AC013289_10 putative chromomethylase; 17383-22406 [Arabidopsis thaliana]
 gi|332196852|gb|AEE34973.1| DNA (cytosine-5)-methyltransferase CMT3 [Arabidopsis thaliana]
          Length = 839

 Score = 50.9 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L        +     ++ ++N ++ K+ Q N P T    ++  + 
Sbjct: 270 TLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLQHNHPET----NVRNMT 325

Query: 61  TQDI 64
            +D 
Sbjct: 326 AEDF 329



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 451 VDVVCGGPPCQGIS 464


>gi|296535365|ref|ZP_06897565.1| site-specific DNA methylase [Roseomonas cervicalis ATCC 49957]
 gi|296264307|gb|EFH10732.1| site-specific DNA methylase [Roseomonas cervicalis ATCC 49957]
          Length = 337

 Score = 50.5 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 15/83 (18%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPNTLIFGDIAKIK 60
          +++ DLFCG GG     ++       E     +  +  +V+ Y  NF    +      + 
Sbjct: 3  IRVLDLFCGGGGSSWGAQRA----GAEIVCGVDAWDK-AVEAYGLNFGREKVRH--LTLT 55

Query: 61 TQ-------DIPDHDVLLAGFPC 76
                   DI   D++LA   C
Sbjct: 56 PDTGPEALGDIGPIDLILASPEC 78


>gi|233770216|gb|ACQ91181.1| DRM-type cytosine DNA-methyltransferase [Fragaria x ananassa]
          Length = 596

 Score = 50.5 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      ++   S EI+  S    +  +  T   G      D
Sbjct: 471 INLLSLFSGIGGAEIALHRLGIR--MKNVVSVEISGVSRTVVRTWWEQTNQKGNLYHLAD 528

Query: 56  IAKIKTQ-------DIPDHDVLLAGFPC 76
           + ++               D+++ G PC
Sbjct: 529 VQELNADRLEHYINTFGGFDLVVGGSPC 556


>gi|327289287|ref|XP_003229356.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B, partial [Anolis
           carolinensis]
          Length = 418

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L        VE + +SEI   S+      ++ N        +I 
Sbjct: 142 IRVLSLFDGIATGYLVLRDLGIK--VEKYVASEICEESIAVGTVRHEGNITYVHDVRNIT 199

Query: 58  KIKTQDIPDHDVLLAGFPCQPFSQ 81
           K    +    D+++ G PC   S 
Sbjct: 200 KRNIDEWGPFDLVIGGSPCNDLSI 223


>gi|323447739|gb|EGB03650.1| hypothetical protein AURANDRAFT_67860 [Aureococcus
          anophagefferens]
          Length = 723

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK--IKTQD 63
          ++F G G +     +      V    + E +P        N P+   +GDI    I    
Sbjct: 2  EIFAGSGSMS----RALRDGGVSIVATCENDPRKAGALANNLPDVHNYGDIHDDSIVGHV 57

Query: 64 IPDHDV--LLAGFPCQPFSQAG 83
               V  + AG  CQ +S+AG
Sbjct: 58 WNPRSVSAIAAGVECQDYSKAG 79


>gi|67925212|ref|ZP_00518579.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67852948|gb|EAM48340.1| C-5 cytosine-specific DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 417

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 24  HRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI----PDHDVLLAGFPCQP 78
           H   + + S EI   +  T   N P   + +GD   +K ++        DV+  G PCQP
Sbjct: 98  HAGFQHYQSYEIIRDAAVTIMQNRPQWNVFYGDDGNVKNKNWSFLKNQIDVIHGGPPCQP 157

Query: 79  FSQAG 83
           FS AG
Sbjct: 158 FSIAG 162


>gi|116620808|ref|YP_822964.1| DNA-cytosine methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223970|gb|ABJ82679.1| DNA-cytosine methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 423

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 25/102 (24%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-------NPYSVKTYQANFPNT-LIFG 54
           ++   F G+G + L  E+          F +E          ++    + N P    + G
Sbjct: 30  RLFSFFSGLGFLDLGFEKA----GYTVAFVNEFRASFLKAYKHARLHLKMNPPEYGYVQG 85

Query: 55  DIAKI-------------KTQDIPDHDVLLAGFPCQPFSQAG 83
           DI+                ++   +    + G PC  FS  G
Sbjct: 86  DISDFLNGAGDRLSGQVRDSKLAGNLVGFVGGPPCPDFSVGG 127


>gi|320109254|ref|YP_004184844.1| hypothetical protein AciPR4_4102 [Terriglobus saanensis SP1PR4]
 gi|319927775|gb|ADV84850.1| hypothetical protein AciPR4_4102 [Terriglobus saanensis SP1PR4]
          Length = 248

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 11/78 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLFC  GG  +   +       +     +INP         +P   I  ++ ++   
Sbjct: 27 RLLDLFCCAGGAGVGYSRA----GFDVVG-VDINPQPR------YPLPFIQANVFQLDFN 75

Query: 63 DIPDHDVLLAGFPCQPFS 80
           +   D + A  PCQ +S
Sbjct: 76 FLTSFDAIHASPPCQSYS 93


>gi|325129892|gb|EGC52695.1| DNA-cytosine methyltransferase [Neisseria meningitidis
          OX99.30304]
          Length = 335

 Score = 50.5 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK-----TQDIPDH-DVLLAGF 74
           ++  ++   ++E+ P     Y+A +P   +I GDI   +      Q +P+  D L+A  
Sbjct: 1  MHNAGIKIIAANELVPERANLYKALYPESKMIIGDILHEEVFQNLIQSVPNRLDFLIASP 60

Query: 75 PCQPFSQAG 83
          PCQ  S AG
Sbjct: 61 PCQGMSVAG 69


>gi|238761849|ref|ZP_04622823.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC
          33638]
 gi|238699963|gb|EEP92706.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC
          33638]
          Length = 826

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 26/102 (25%)

Query: 1  MLKITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFG 54
          ML    LF   GIG     L+         C  ++E+    +   + N    +    I G
Sbjct: 1  MLNYISLFSSAGIGC--YGLKSA----GFNCVATAELLEKRLNIQRYNNKCKYETGYISG 54

Query: 55 DIA----------KIKT----QDIPDHDVLLAGFPCQPFSQA 82
          D+           +I +    + I D D+++A  PCQ  S A
Sbjct: 55 DLTDPVVHKKLYDEINSFKDKEKISDLDLVIATPPCQGMSVA 96


>gi|297625484|ref|YP_003687247.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921249|emb|CBL55799.1| DNA (cytosine-5-)-methyltransferase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 552

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          M +  +LF G GG+ L L         E   ++E++P + +++  N
Sbjct: 1  MPRFVELFAGCGGLSLGLRAA----GWEEAMANELSPMAAQSFAFN 42



 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 51  LIFGDIAKIK------TQDIP-DHDVLLAGFPCQPFSQAG 83
           LI GDI  +           P D D++  G PCQ FS AG
Sbjct: 106 LIVGDIRALNDWMRDHPSQRPKDVDLISGGPPCQSFSMAG 145


>gi|192824258|ref|YP_001994899.1| gp82 [Mycobacterium phage Pukovnik]
 gi|190610488|gb|ACE80008.1| gp82 [Mycobacterium phage Pukovnik]
          Length = 228

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
          M ++ DLFCG GG  +   +       E     +I   +    + ++P     GD  +  
Sbjct: 1  MPRLLDLFCGAGGAGMGYHRA----GFEVVG-VDI---AQ---RDSYPFEFHQGDALEFL 49

Query: 61 TQDIPDHDVLLAGFPCQPFS 80
               + D + A  PCQ +S
Sbjct: 50 KAHGHEFDAIHASPPCQRYS 69


>gi|323703857|ref|ZP_08115492.1| DNA-cytosine methyltransferase [Desulfotomaculum nigrificans DSM
           574]
 gi|323531175|gb|EGB21079.1| DNA-cytosine methyltransferase [Desulfotomaculum nigrificans DSM
           574]
          Length = 409

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQA--NFPNTLIFGDIAKIKTQDI--------PDHD 68
           EQ             E + Y ++T +A  N+P     GD+ +I + DI         D  
Sbjct: 54  EQAGFT----TAAFVENDKYCIETIKANRNWPLVGN-GDVTEITSYDILKEANLSKGDVA 108

Query: 69  VLLAGFPCQPFSQAG 83
           +L  G PCQPFS  G
Sbjct: 109 LLAGGAPCQPFSNLG 123


>gi|46019827|emb|CAE52349.1| putative cytosine-specific methyltransferase [Streptococcus
           thermophilus]
          Length = 408

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 34/113 (30%)

Query: 2   LKI--TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           +KI   +LF G GG+   LEQ+    N++   + E     V+T      +     D  +I
Sbjct: 1   MKINNIELFAGAGGLVDGLEQSG---NIQLLSAVEWLKPQVRTLVNRLESKYNIQDAKEI 57

Query: 60  -----------------KTQDI------------PDHDVLLAGFPCQPFSQAG 83
                              ++              +  ++  G PCQ +  AG
Sbjct: 58  VLNFDIQRTEELINGWSNDEEFGSSPGLAKIVGNKEVHMISGGPPCQAYPLAG 110


>gi|212720705|ref|NP_001131171.1| hypothetical protein LOC100192479 [Zea mays]
 gi|194690774|gb|ACF79471.1| unknown [Zea mays]
          Length = 609

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +     N     S E +  +    ++ +  T     +   D+
Sbjct: 486 MNVLSLFTGIGGAEVALHRLGIRMN--TVVSVEKSEVNRTILKSWWDQTQTGTLIEINDV 543

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             +    I          D+++ G PC
Sbjct: 544 QTLTADRIEAYIRRIGGFDLVIGGSPC 570


>gi|297194175|ref|ZP_06911573.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|297152146|gb|EFH31551.1| DNA-cytosine methyltransferase [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 328

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
            D+  G GG+   LE              +    + +T  AN P+  ++  D+      
Sbjct: 7  FVDVCAGAGGLASGLESA----GFSPVLLLDNKRQACETLLANRPHWNVVCEDLVDFLPD 62

Query: 63 DIP---DHDVLLAGFP 75
          D P   D D+L AG P
Sbjct: 63 DHPETLDVDLLSAGLP 78


>gi|238922584|ref|YP_002936097.1| modification methylase, putative [Eubacterium rectale ATCC 33656]
 gi|238874256|gb|ACR73963.1| modification methylase, putative [Eubacterium rectale ATCC 33656]
          Length = 433

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 57/138 (41%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------ 54
           M ++ + F GIG     L +       E   +++ +  ++  Y       +         
Sbjct: 15  MFRVIETFSGIGSQAKALTRIGKP--FEIVNTADWDINAILAYCLIHKGKIDINKYAEIS 72

Query: 55  --DIA----------------------------------------------KIKTQDIPD 66
             D+                                                +   DIPD
Sbjct: 73  DEDVTNFLKGLSLSSDGKKPMSDETFRRMPMHLKRRLYAAIKETRNMVSITDVMGSDIPD 132

Query: 67  -HDVLLAGFPCQPFSQAG 83
             D+    FPCQ  S  G
Sbjct: 133 NIDLFTYSFPCQDLSLCG 150


>gi|149002241|ref|ZP_01827183.1| hypothetical protein CGSSp14BS69_01329 [Streptococcus pneumoniae
          SP14-BS69]
 gi|168490540|ref|ZP_02714683.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|225860575|ref|YP_002742084.1| hypothetical protein SPT_0600 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237650161|ref|ZP_04524413.1| hypothetical protein SpneC1_05447 [Streptococcus pneumoniae CCRI
          1974]
 gi|237821760|ref|ZP_04597605.1| hypothetical protein SpneC19_05522 [Streptococcus pneumoniae CCRI
          1974M2]
 gi|298229932|ref|ZP_06963613.1| hypothetical protein SpneCMD_04582 [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298255644|ref|ZP_06979230.1| hypothetical protein SpneCM_08617 [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502364|ref|YP_003724304.1| hypothetical protein HMPREF0837_10862 [Streptococcus pneumoniae
          TCH8431/19A]
 gi|147759556|gb|EDK66547.1| hypothetical protein CGSSp14BS69_01329 [Streptococcus pneumoniae
          SP14-BS69]
 gi|183574997|gb|EDT95525.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|225727617|gb|ACO23468.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237959|gb|ADI69090.1| conserved hypothetical protein [Streptococcus pneumoniae
          TCH8431/19A]
 gi|327390310|gb|EGE88651.1| hypothetical protein SPAR5_0552 [Streptococcus pneumoniae
          GA04375]
 gi|332076406|gb|EGI86869.1| hypothetical protein SPAR68_0593 [Streptococcus pneumoniae
          GA41301]
          Length = 54

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
           DLF G GG    L+++     ++   + EI+  +VKTY+ N P  
Sbjct: 7  IDLFSGAGGTTSGLKKS----GIDVQVAVEIDSVAVKTYKLNNPEV 48


>gi|242077178|ref|XP_002448525.1| hypothetical protein SORBIDRAFT_06g028430 [Sorghum bicolor]
 gi|241939708|gb|EES12853.1| hypothetical protein SORBIDRAFT_06g028430 [Sorghum bicolor]
          Length = 913

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L      +   +E  ++ ++N ++ ++ + N P T +  
Sbjct: 343 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 396



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 509 DVDVICGGPPCQGIS 523


>gi|242065598|ref|XP_002454088.1| hypothetical protein SORBIDRAFT_04g024430 [Sorghum bicolor]
 gi|241933919|gb|EES07064.1| hypothetical protein SORBIDRAFT_04g024430 [Sorghum bicolor]
          Length = 770

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L      +   +E  ++ ++N ++ ++ + N P T +  
Sbjct: 349 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 402



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 514 DVDVICGGPPCQGIS 528


>gi|75157426|sp|Q8LPU5|CMT3_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 3; AltName:
           Full=Chromomethylase 3; AltName: Full=DNA
           methyltransferase 105
 gi|20977600|gb|AAM28227.1| DNA methyltransferase 105 [Zea mays]
          Length = 915

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L      +   +E  ++ ++N ++ ++ + N P T +  
Sbjct: 346 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 399



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 511 DVDVICGGPPCQGIS 525


>gi|162460714|ref|NP_001105167.1| DNA (cytosine-5)-methyltransferase 3 [Zea mays]
 gi|75167623|sp|Q9ARI6|CMT2_MAIZE RecName: Full=DNA (cytosine-5)-methyltransferase 2; AltName:
           Full=Chromomethylase 2; AltName: Full=DNA cytosine
           methyltransferase MET5; AltName: Full=Zea
           methyltransferase5; Short=Zmet5
 gi|13272199|gb|AAK15805.1| chromomethylase [Zea mays]
          Length = 915

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   KITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            + DL+ G GG+   L      +   +E  ++ ++N ++ ++ + N P T +  
Sbjct: 346 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRN 399



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 511 DVDVICGGPPCQGIS 525


>gi|171679563|ref|XP_001904728.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939407|emb|CAP64635.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1287

 Score = 50.5 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE-INPYSVKTYQANFPN----TLIFGDI 56
           L+  DLFCG G +   LE       +E  ++++  +  ++ TY AN P+       +G +
Sbjct: 807 LRGMDLFCGSGNLGRGLEDGGA---IEMRWAADTWDK-AIHTYMANAPDQDIVHPFYGSV 862

Query: 57  AKIK--------TQDIP---DHDVLLAGFPCQPFSQ 81
             +         + ++P   D +V+ AG PC  FS 
Sbjct: 863 DDLLRLALEGKFSDNVPRPGDVEVISAGSPCPGFSL 898


>gi|260769649|ref|ZP_05878582.1| site-specific DNA-methyltransferase putative [Vibrio furnissii CIP
           102972]
 gi|260614987|gb|EEX40173.1| site-specific DNA-methyltransferase putative [Vibrio furnissii CIP
           102972]
          Length = 383

 Score = 50.1 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPN---TLIFGD 55
           I   F G G + L  E++      +  F +E        Y+ +      P        G 
Sbjct: 18  IFSFFAGTGFLDLGFERS----GFDIRFVNEFYKPFYDAYKYSRKKMGHPEPQYEHHLGS 73

Query: 56  IAKI----KTQDIPDH------DVL---LAGFPCQPFSQAG 83
           I ++      + +         D L   + G PC  FS AG
Sbjct: 74  IDELLAGPPKKRLKQFLIDAKKDGLVGFIGGPPCPDFSVAG 114


>gi|229552043|ref|ZP_04440768.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539457|ref|YP_003173956.1| cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc
           705]
 gi|229314620|gb|EEN80593.1| DNA-cytosine methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151133|emb|CAR90105.1| Cytosine-specific methyltransferase [Lactobacillus rhamnosus Lc
           705]
          Length = 415

 Score = 50.1 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 49/126 (38%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ-----------------A 45
            I DLF G GG+     +             E++  + +T +                  
Sbjct: 4   NIIDLFSGAGGLTEGFRR----PEYNILAHVEMSVDACQTLRLRDDYYQLKKRNMLQQYR 59

Query: 46  NF-----------------------PNTLIFGDI----AKIKTQ-DIPDHDVLLAGFPCQ 77
           NF                         T+  G I    AKI ++        ++ G PCQ
Sbjct: 60  NFLDGKISLSELEQQCGLRQKALTINETIDTGTIDGILAKIDSKLSNRQVHGIIGGPPCQ 119

Query: 78  PFSQAG 83
            +S  G
Sbjct: 120 AYSTVG 125


>gi|269958230|ref|YP_003328018.1| C-5 cytosine-specific DNA methylase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269306911|gb|ACZ32460.1| C-5 cytosine-specific DNA methylase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 687

 Score = 50.1 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 15/87 (17%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----- 59
            DLF G GG+   +++       +   ++  N Y V  ++AN P T  +  IA +     
Sbjct: 24  VDLFSGFGGLTQGIDEA----GFDVITAANHNEYKVAVHEANHPETEHW--IADLVDTES 77

Query: 60  ----KTQDIPDHDVLLAGFPCQPFSQA 82
                 +++P  D+L AG  C   S A
Sbjct: 78  PAYHSVRELPAGDLLAAGVSCVNHSPA 104


>gi|308805380|ref|XP_003080002.1| putative DNA methyltransferase (ISS) [Ostreococcus tauri]
 gi|116058461|emb|CAL53650.1| putative DNA methyltransferase (ISS) [Ostreococcus tauri]
          Length = 394

 Score = 50.1 bits (120), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + +++CGIG + L +      R        ++NP +   Y  N     +  ++A +  + 
Sbjct: 20  VAEMYCGIGVMSLAMRWVRRVRARTVVAY-DLNPNACDAYARNHGTRPLAKNLAGVSMEA 78

Query: 64  IPD--HDVLLAGFPCQPFSQAG 83
           +     +  L   PCQPF++ G
Sbjct: 79  LGKIGAEAWLMSPPCQPFTRQG 100


>gi|326789362|ref|YP_004307183.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
 gi|326540126|gb|ADZ81985.1| DNA-cytosine methyltransferase [Clostridium lentocellum DSM 5427]
          Length = 415

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 57/138 (41%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY-----------QANFPN 49
           M  + + F GIG     L     + N     +++ +  ++  Y             N  +
Sbjct: 1   MFNVVETFSGIGSQAKALRNIGFNAN--IVATADWDINAIIAYDLIHHGKQDLTAYNHYS 58

Query: 50  TLIFGD-------------------------------------------IAKIKTQDIPD 66
                +                                           I  IK +DI D
Sbjct: 59  EQQLNEELSKFTLSADGKSAMTEKAKKVLPIHLKKMLLYAIRRSNNLVSITDIKGKDISD 118

Query: 67  -HDVLLAGFPCQPFSQAG 83
             D+L   FPCQ  S  G
Sbjct: 119 NIDLLTYSFPCQDLSVCG 136


>gi|218193912|gb|EEC76339.1| hypothetical protein OsI_13909 [Oryza sativa Indica Group]
          Length = 1527

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++         ++ E    +   +  N P   +F           
Sbjct: 1095 LDIFAGCGGLSEGLQRSGLSL---TKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAI 1151

Query: 54   ----GD----IA---------KIKTQDIP------DHDVLLAGFPCQPFS 80
                GD    I+         K+    I       + + +  G PCQ FS
Sbjct: 1152 MDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFS 1201


>gi|291513670|emb|CBK62880.1| Site-specific DNA methylase [Alistipes shahii WAL 8301]
          Length = 541

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
             DLFCG GG    +E+      +  +       +  ++ ++ AN P    +  D+  + 
Sbjct: 8   YIDLFCGAGGTSTGVEKANYKERKCAKVIACVNHDANAIASHAANHPEAQHYTEDMRTLD 67

Query: 61  TQDIPDHD------------VLLAGFPCQPFSQA 82
            + + +H             VL A   C  FS+A
Sbjct: 68  LRPLAEHTAEMRRMYPMAKVVLWASLECTNFSRA 101


>gi|75233438|sp|Q7Y1I7|DNM1A_ORYSJ RecName: Full=DNA (cytosine-5)-methyltransferase 1A; Short=OsMET1a;
            AltName: Full=DNA methyltransferase 1-1; Short=OsMET1-1
 gi|31126751|gb|AAP44671.1| putative DNA (cytosine-5-)-methyltransferase [Oryza sativa Japonica
            Group]
 gi|171196101|dbj|BAG15928.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
 gi|222625970|gb|EEE60102.1| hypothetical protein OsJ_12965 [Oryza sativa Japonica Group]
          Length = 1527

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++         ++ E    +   +  N P   +F           
Sbjct: 1095 LDIFAGCGGLSEGLQRSGLSL---TKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAI 1151

Query: 54   ----GD----IA---------KIKTQDIP------DHDVLLAGFPCQPFS 80
                GD    I+         K+    I       + + +  G PCQ FS
Sbjct: 1152 MDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFS 1201


>gi|153852755|ref|ZP_01994192.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
 gi|149754397|gb|EDM64328.1| hypothetical protein DORLON_00174 [Dorea longicatena DSM 13814]
          Length = 367

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +PD D+L AGFPCQ FS AG
Sbjct: 1  MPDFDLLCAGFPCQAFSIAG 20


>gi|328885641|emb|CCA58880.1| DNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 426

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          + DLF G GG  + L +      +      E + ++ KT +A      I  D+A      
Sbjct: 8  VIDLFAGPGGWSVPLRR----FGIRDVGL-EWDEWACKT-RAAAGLLTIRTDVAMYPAGI 61

Query: 64 IPDHD-VLLAGFPCQPFSQAG 83
                  +A  PCQ +S AG
Sbjct: 62 FAGRTRGFIASPPCQAWSMAG 82


>gi|322511384|gb|ADX06692.1| putative C-5 cytosine specific DNA methyltransferase [Organic Lake
           phycodnavirus]
          Length = 358

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 41/108 (37%)

Query: 11  IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------------------ 52
           +GG  L + Q       E    +E +  S+++++ NFP++ +                  
Sbjct: 1   MGGDTLGMIQA----GCEVIAFNEYDKASIQSHKMNFPDSELICASVKEREKYKESLTGT 56

Query: 53  ----------FGDIAKIKTQDIPD-------HDVLLAGFPCQPFSQAG 83
                     + D+  I  Q+I D        D++ AG PCQ FS  G
Sbjct: 57  KKENHKAMKDYDDVYNI--QNIQDDVLGSYKADLIFAGHPCQGFSNGG 102


>gi|18653391|gb|AAL77415.1| putative cytosine-5 DNA methyltransferase [Oryza sativa Japonica
            Group]
          Length = 1522

 Score = 50.1 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 37/110 (33%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF----------- 53
             D+F G GG+   L+++         ++ E    +   +  N P   +F           
Sbjct: 1090 LDIFAGCGGLSEGLQRSGLSL---TKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAI 1146

Query: 54   ----GD----IA---------KIKTQDIP------DHDVLLAGFPCQPFS 80
                GD    I+         K+    I       + + +  G PCQ FS
Sbjct: 1147 MDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFS 1196


>gi|169977326|emb|CAQ18910.1| domains rearranged methyltransferase [Nicotiana sylvestris]
          Length = 126

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTY--QAN-FPNTLIFGDIAK 58
           +  LF GIGG  + L +     N       SE+N   V+++  Q N   N + F D+ +
Sbjct: 1  NVLSLFSGIGGGEVALYRLGIPLNTVVSVEKSEVNRDIVRSWWEQTNQKGNLIHFNDVQQ 60

Query: 59 IK-------TQDIPDHDVLLAGFPC 76
          +         +     D+++ G PC
Sbjct: 61 LNGDRLEQLIESFGGFDLVIGGSPC 85


>gi|326797283|ref|YP_004315103.1| DNA-cytosine methyltransferase [Marinomonas mediterranea MMB-1]
 gi|326548047|gb|ADZ93267.1| DNA-cytosine methyltransferase [Marinomonas mediterranea MMB-1]
          Length = 378

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 19 EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPDH------DVLL 71
          E            + +I+      Y+ NFP T +   D+AK   +   +H      D ++
Sbjct: 22 ELAGFQ----TVAAVDIDETLQSAYRLNFPETNVLTADLAKTGRKFWSEHLNGLQVDGVI 77

Query: 72 AGFPCQPFSQAG 83
           G PCQ +S+ G
Sbjct: 78 GGPPCQGYSRMG 89


>gi|225435648|ref|XP_002283355.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 965

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + + DL+ G G +   L        V     ++ +IN Y+ ++ + N P T     +   
Sbjct: 387 MTLLDLYSGCGAMSSGLCLGAKMSGVNLVTRWAIDINAYACESVRLNHPETQ----VRNE 442

Query: 60  KTQDI 64
             +D 
Sbjct: 443 SAEDF 447



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 572 DVDVICGGPPCQGIS 586


>gi|153812680|ref|ZP_01965348.1| hypothetical protein RUMOBE_03087 [Ruminococcus obeum ATCC 29174]
 gi|149831196|gb|EDM86285.1| hypothetical protein RUMOBE_03087 [Ruminococcus obeum ATCC 29174]
          Length = 622

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT- 61
          K+  L  GIG + +  E            + E +  +++ Y+ N     I G+I ++   
Sbjct: 4  KVIILGAGIGAMTMGFENA----GCSVVAAYERDRRAIELYKKN-----ISGEINELDQL 54

Query: 62 -----QDIPDHDVL 70
               +D+PD D+L
Sbjct: 55 GTSNLEDVPDIDIL 68


>gi|213581465|ref|ZP_03363291.1| DNA cytosine methylase [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 295

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/20 (85%), Positives = 18/20 (90%)

Query: 64 IPDHDVLLAGFPCQPFSQAG 83
          +P HDVLLAGFPCQPFS AG
Sbjct: 1  MPQHDVLLAGFPCQPFSLAG 20


>gi|294629551|ref|ZP_06708111.1| modification methylase NaeI [Streptomyces sp. e14]
 gi|292832884|gb|EFF91233.1| modification methylase NaeI [Streptomyces sp. e14]
          Length = 328

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +   D+  G GG+ L LEQ       E     + +  +V T +AN P+  ++  D+ +  
Sbjct: 1  MTFVDVCSGAGGLALGLEQA----GFEPRLLLDDDDDAVATLRANRPHWNVLHTDLLEFD 56

Query: 61 TQDIP---DHDVLLAGFP 75
            + P   D D+L AG P
Sbjct: 57 PVEHPDTYDVDLLSAGLP 74


>gi|224026277|ref|ZP_03644643.1| hypothetical protein BACCOPRO_03033 [Bacteroides coprophilus DSM
          18228]
 gi|224019513|gb|EEF77511.1| hypothetical protein BACCOPRO_03033 [Bacteroides coprophilus DSM
          18228]
          Length = 84

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY 43
            LF G GG+ +  E+      ++  F++E+   + +TY
Sbjct: 8  VSLFTGAGGMDVGFER----PGIKVVFANEVMKEAAQTY 42


>gi|40021630|gb|AAR37051.1| putative cytosine DNA methyltransferase [Neurospora tetrasperma]
          Length = 246

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDI--- 56
               D F G GG    +     H    C    +   ++V +  ANF   +T I+ DI   
Sbjct: 89  YTAGDTFAGAGGASRGITDAGVHLEF-CV---DNWEHAVASLNANFQGQDTTIY-DIDMH 143

Query: 57  AKIKTQDIPD-HDVLLAGFPCQPFSQA 82
             I  ++I    D+L    PCQ +S A
Sbjct: 144 NFIVDKEIRHRVDILHLLPPCQVWSPA 170


>gi|260890221|ref|ZP_05901484.1| modification methylase MthTI [Leptotrichia hofstadii F0254]
 gi|260859841|gb|EEX74341.1| modification methylase MthTI [Leptotrichia hofstadii F0254]
          Length = 41

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41
          +K+   F G+GGI L  EQ          +S+EI+    K
Sbjct: 1  MKVAGFFSGVGGIELGFEQ----VGFNVIYSNEIDKKCRK 36


>gi|145610805|ref|XP_368355.2| hypothetical protein MGG_00889 [Magnaporthe oryzae 70-15]
 gi|145018162|gb|EDK02441.1| hypothetical protein MGG_00889 [Magnaporthe oryzae 70-15]
          Length = 1269

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 36/113 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  DLF G G +   +E+      VE  + ++I   ++ TY AN  +        G + 
Sbjct: 711 LRGLDLFAGCGNLGRGIEEGGA---VEVKWVNDIWTNAIHTYMANTNDKSAVKPFLGSVD 767

Query: 58  KIKTQDIP-----------------------------DHDVLLAGFPCQPFSQ 81
            +  + +                              + + +  G PCQ FS 
Sbjct: 768 LLLEKALKRDGSVLDGSVLDGSVLDGSVLDGSVPSRGEVEFISGGSPCQGFSL 820


>gi|89055349|ref|YP_510800.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
 gi|88864898|gb|ABD55775.1| DNA-cytosine methyltransferase [Jannaschia sp. CCS1]
          Length = 502

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 51/131 (38%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQAN---------FPNTL- 51
           I DLF G GG+           +  ++   S E     V+T +           FP    
Sbjct: 7   IIDLFAGPGGLAEGFSAAGRETDTRMKIRLSIEKEATEVRTLRLRAFLRGFDGGFPTEYY 66

Query: 52  ------------------------------------IFGDIAKIKTQDIPDHD---VLLA 72
                                               +F  IA +  +   +HD   +L+ 
Sbjct: 67  AALNASEPLPDWSELFPARWADACKEAWQMELGQPGVFEVIANVLDRTREEHDGNTILIG 126

Query: 73  GFPCQPFSQAG 83
           G PCQ +S AG
Sbjct: 127 GPPCQAYSLAG 137


>gi|255018626|ref|ZP_05290752.1| DNA-methyltransferase (cytosine-specific) [Listeria monocytogenes
          FSL F2-515]
          Length = 172

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 37 PYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          P++V+ Y   F N  +  D+ K         D+L+ G PCQ +S+ G
Sbjct: 2  PFAVQAYNNIFSNDYVAQDVTKWNMS----VDLLIHGSPCQDWSKNG 44


>gi|295104947|emb|CBL02491.1| C-5 cytosine-specific DNA methylase. [Faecalibacterium prausnitzii
           SL3/3]
          Length = 167

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
            +  LF GIGG  L  + T+        + SEI+ + V   + +FP  
Sbjct: 119 TLGSLFDGIGGFPLVFQSTYGE--GTAIWGSEIDSFCVAVTKKHFPEK 164


>gi|195655665|gb|ACG47300.1| DNA cytosine methyltransferase Zmet3 [Zea mays]
          Length = 609

 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDI 56
           + +  LF GIGG  + L +     N     S E +  +    ++ +  T     +   D+
Sbjct: 486 MNVLSLFTGIGGAEVALHRLGIRMN--TVISVEKSEVNRTILKSWWDQTQIGTLIEINDV 543

Query: 57  AKIKTQDIP-------DHDVLLAGFPC 76
             +    I          D+++ G PC
Sbjct: 544 QTLTADRIEAYIRRIGGFDLVIGGSPC 570


>gi|300777384|ref|ZP_07087242.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
          35910]
 gi|300502894|gb|EFK34034.1| DNA (cytosine-5-)-methyltransferase [Chryseobacterium gleum ATCC
          35910]
          Length = 351

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 5  TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-----IFGD-I 56
            LF   GI       E  F    +    ++E+       YQA +PN+      I  D I
Sbjct: 4  ASLFSSAGI------AETYFEEVGINIIAANELVQERADLYQALYPNSKMIAGSILDDKI 57

Query: 57 AKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           K   +  P+  D L+A  PCQ  S AG
Sbjct: 58 FKTLVESTPEKLDFLIASPPCQGMSVAG 85


>gi|297194174|ref|ZP_06911572.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|297152145|gb|EFH31550.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 492

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 20 QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPDHDVLLAGFPCQP 78
             +          E +  +  T   N      F GD+ + +    P   VL  G PCQ 
Sbjct: 1  MAAHVLGYRTTG-IEWDAGACTT--RNEAGMDTFKGDVRQYRAALFPLAQVLTGGPPCQT 57

Query: 79 FSQAG 83
          F+ AG
Sbjct: 58 FTVAG 62


>gi|297746421|emb|CBI16477.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           + + DL+ G G +   L        V     ++ +IN Y+ ++ + N P T     +   
Sbjct: 204 MTLLDLYSGCGAMSSGLCLGAKMSGVNLVTRWAIDINAYACESVRLNHPETQ----VRNE 259

Query: 60  KTQDI 64
             +D 
Sbjct: 260 SAEDF 264



 Score = 37.0 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 428 DVDVICGGPPCQGIS 442


>gi|300704573|ref|YP_003746176.1| DNA (cytosine-5-)-methyltransferase [Ralstonia solanacearum
          CFBP2957]
 gi|299072237|emb|CBJ43569.1| DNA (cytosine-5-)-methyltransferase [Ralstonia solanacearum
          CFBP2957]
          Length = 621

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          I DLF G GG+   +E              +I    +  +++ ++AN P T  +  D+ +
Sbjct: 15 IVDLFAGGGGMSTAIEMALGR-------HVDIAINHDADAIEMHKANHPQTKHYCSDVFE 67

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  ++         L     C  FSQA
Sbjct: 68 VCPREATQGRPVGHLHGSPDCTHFSQA 94


>gi|224057130|ref|XP_002299134.1| DNA methyltransferase [Populus trichocarpa]
 gi|222846392|gb|EEE83939.1| DNA methyltransferase [Populus trichocarpa]
          Length = 973

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + DL+ G G +   L    N   +     ++ ++N ++ ++ + N P T     +     
Sbjct: 402 LLDLYSGCGAMSTGLCLGANLSGLNLVTKWAVDLNKHACESLRLNHPETQ----VRNETA 457

Query: 62  QDI 64
           +D 
Sbjct: 458 EDF 460



 Score = 34.0 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D +V+  G PCQ  S
Sbjct: 590 DVEVICGGPPCQGIS 604


>gi|301765810|ref|XP_002918318.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like isoform 4
           [Ailuropoda melanoleuca]
          Length = 773

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 558 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 615

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 616 KRNIEEWGPFDLVIGGSPCNDLS 638


>gi|301765808|ref|XP_002918317.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 848

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 570 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 627

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 628 KRNIEEWGPFDLVIGGSPCNDLS 650


>gi|301765806|ref|XP_002918316.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 856

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 578 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 635

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 636 KRNIEEWGPFDLVIGGSPCNDLS 658


>gi|301765804|ref|XP_002918315.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 848

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 570 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 627

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 628 KRNIEEWGPFDLVIGGSPCNDLS 650


>gi|281339306|gb|EFB14890.1| hypothetical protein PANDA_006761 [Ailuropoda melanoleuca]
          Length = 854

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 576 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 633

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 634 KRNIEEWGPFDLVIGGSPCNDLS 656


>gi|310830858|ref|YP_003965959.1| Modification methylase PspPI [Paenibacillus polymyxa SC2]
 gi|309250325|gb|ADO59891.1| Modification methylase PspPI [Paenibacillus polymyxa SC2]
          Length = 443

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 15/90 (16%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-------NPYSVKTYQANFPNTLIFG 54
           L+      G G I     +       E   + E        + +S   Y  N P +++F 
Sbjct: 123 LRTITFCAGAG-IS---SECMKKAGFEEVAAVEWNPKEGSEDKFS-DIYLENHPESVMFN 177

Query: 55  DI--AKIKTQDIPDHDVLLAGFPCQPFSQA 82
            I   ++K  D+P  +V LA   C  FS+A
Sbjct: 178 -IPMQQLKASDLPHAEVWLATLDCSDFSKA 206


>gi|156404009|ref|XP_001640200.1| predicted protein [Nematostella vectensis]
 gi|156227333|gb|EDO48137.1| predicted protein [Nematostella vectensis]
          Length = 336

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           I DLF GIG   L       H N     + E NP++V+  + N           + FGD 
Sbjct: 151 IVDLFAGIGYFVLPF---LVHANAAFVHACEWNPHAVEALRRNLVQNKVNEKCEVHFGDN 207

Query: 57  AKIKTQDIPDH 67
            K   + I DH
Sbjct: 208 RKFPYKGIADH 218


>gi|47201036|emb|CAF88359.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 234

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           +++  LF GI    L L+       VE + +SE+   S+     N    +   GD+  I 
Sbjct: 142 IRVLSLFDGIATGYLVLKDLGFK--VETYIASEVCEDSIAVAAVNHEGKITQVGDVRFIN 199

Query: 61  TQDI---PDHDVLLAGFPCQPFSQ 81
            + +      D+L+ G PC   S 
Sbjct: 200 QEHLHRWGPFDLLIGGSPCNDLSI 223


>gi|195472313|ref|XP_002088445.1| GE18570 [Drosophila yakuba]
 gi|194174546|gb|EDW88157.1| GE18570 [Drosophila yakuba]
          Length = 331

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVL 70
          +    +        E   + +IN  +   Y  N+ +  +   +I  +  +++     ++L
Sbjct: 1  MHYAFKYA--QLEGEIVAAMDINTVANAVYAHNYGHNFVKTRNIQSLSVKEVGKLQANML 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|296088422|emb|CBI37413.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + DL+ G GG+   L        V     ++ + +  + ++ + N P T     +     
Sbjct: 170 LLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPETQ----VRNETA 225

Query: 62  QDIPD 66
           +D  D
Sbjct: 226 EDFLD 230



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 346 DVDVICGGPPCQGIS 360


>gi|225427443|ref|XP_002267685.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1586

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 4    ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            + DL+ G GG+   L        V     ++ + +  + ++ + N P T     +     
Sbjct: 1027 LLDLYSGCGGMSTGLCLGAKLSCVNLVTKWALDFDKSACESLKLNHPETQ----VRNETA 1082

Query: 62   QDIPD 66
            +D  D
Sbjct: 1083 EDFLD 1087



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66   DHDVLLAGFPCQPFS 80
            D DV+  G PCQ  S
Sbjct: 1203 DVDVICGGPPCQGIS 1217


>gi|255557861|ref|XP_002519960.1| protein with unknown function [Ricinus communis]
 gi|223541006|gb|EEF42564.1| protein with unknown function [Ricinus communis]
          Length = 734

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF-----FSSEINPYSVKTYQANFPNTLIFGDIAK 58
           + DLF G GG+   L        V C      ++ + N  + ++ + N P T    ++  
Sbjct: 164 LLDLFSGCGGMSTGL---CLGAKVSCVDLVTRWALDSNKSACESLKLNHPET----NVRN 216

Query: 59  IKTQDI 64
              +D 
Sbjct: 217 EAAEDF 222



 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 340 DVDVICGGPPCQGIS 354


>gi|83945820|ref|ZP_00958162.1| probable C-5 cytosine-specific DNA methylase [Oceanicaulis
          alexandrii HTCC2633]
 gi|83850767|gb|EAP88630.1| probable C-5 cytosine-specific DNA methylase [Oceanicaulis
          alexandrii HTCC2633]
          Length = 681

 Score = 49.4 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 4  ITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
          I D F G GG  +        H +V    +   +P +++ +  N P+T  F  +I  +  
Sbjct: 9  IADCFAGAGGASMGIFLALGRHPDV----AINHDPDAIRMHGVNHPDTYHFNSNIWNVDP 64

Query: 62 QD----IPDHDVLLAGFPCQPFSQA 82
           D         +L A   C+ FS+A
Sbjct: 65 DDVVRRFGPVGLLWASPDCKHFSKA 89


>gi|317489196|ref|ZP_07947714.1| DNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|325832287|ref|ZP_08165286.1| hypothetical protein HMPREF9404_4959 [Eggerthella sp. HGA1]
 gi|316911704|gb|EFV33295.1| DNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|325486123|gb|EGC88577.1| hypothetical protein HMPREF9404_4959 [Eggerthella sp. HGA1]
          Length = 261

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 24/89 (26%)

Query: 2   LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           +K+ +LF G   IG       + F  R  E  FS E +    ++  A      +  DI  
Sbjct: 40  MKVLELFSGTRSIG-------EAFEKRGHE-VFSVEWD----ESLPA-----DLHADIEF 82

Query: 59  IKTQDIPDH----DVLLAGFPCQPFSQAG 83
           +K  D+       DV+ A   C  FS AG
Sbjct: 83  LKAPDVLRAFGRPDVVWASPDCATFSMAG 111


>gi|256383694|gb|ACU78264.1| CCTTC-recognizing Type II restriction modification system
          (MmyCII) adenine/cytosine DNA methyltransferase subunit
          [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384525|gb|ACU79094.1| CCTTC-recognizing Type II restriction modification system
          (MmyCII) adenine/cytosine DNA methyltransferase subunit
          [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455594|gb|ADH21829.1| CCTTC-recognizing Type II restriction modification system
          (MmyCII) adenine/cytosine DNA methyltransferase subunit
          [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 25/99 (25%)

Query: 3  KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDI 56
              LF   G+G         F   N EC  ++E+    +   + N    + +  I GDI
Sbjct: 7  TYISLFSSAGVGC------YGFKLENFECIATNELLERRLNIQKLNNKCKYDSGYIKGDI 60

Query: 57 AKIKTQDI-------------PDHDVLLAGFPCQPFSQA 82
             +T+D+                DV++A  PCQ  S A
Sbjct: 61 TLKETKDLIYNEINLWKQLGNDKVDVIIATPPCQGMSVA 99


>gi|157786471|ref|YP_001491648.1| Putative DNA methylase [Mycobacterium phage U2]
 gi|40769391|gb|AAR89717.1| gp77 [Mycobacterium phage U2]
          Length = 223

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ DLFCG GG     +    H         +INP      Q N+  +  + GD  +   
Sbjct: 4  RLLDLFCGAGGAGRGYQLAGFHVTG-----VDINP------QPNYAGDEFVQGDALEYLD 52

Query: 62 QDIPDHDVLLAGFPCQP 78
              + DV+ A  PCQ 
Sbjct: 53 AHGHEFDVIHASPPCQS 69


>gi|71608927|emb|CAI94868.1| M1.Hin4II m5C DNA methyltransferase [Haemophilus influenzae]
          Length = 387

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 35/104 (33%), Gaps = 36/104 (34%)

Query: 3  KITDLFC--GIGGIRLDLEQTFNHRNVECFFSSE----------INPYSVKTYQANFPNT 50
              LF   G+G         F   N EC  ++E          IN          F + 
Sbjct: 6  TYISLFSSSGVGC------YGFKLENFECIATNELIERRLNVQKINKKCK------FKSG 53

Query: 51 LIFGDIAK----------IKTQDI--PDHDVLLAGFPCQPFSQA 82
           I G IA+          +K   I   D DV++A  PCQ  S A
Sbjct: 54 YILGSIAEEETKAKLFNEVKKWHINGKDVDVVIATPPCQGMSVA 97


>gi|119773422|ref|YP_926162.1| modification methylase (cytosine-specific methyltransferase
           [Shewanella amazonensis SB2B]
 gi|119765922|gb|ABL98492.1| modification methylase (cytosine-specific methyltransferase
           [Shewanella amazonensis SB2B]
          Length = 520

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 56/134 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--------ANF-PNTL- 51
           +++ DLF G GG+          R  +   S+E++P++ +T +        +N  PN L 
Sbjct: 6   IQVVDLFAGPGGLGEGFSSV--DRTFQILVSAEMDPFAHQTLRLRAFYRLISNHAPNELD 63

Query: 52  --------------------IFGD----------------------IAKIKTQDIPDHDV 69
                               ++ D                      I K   +D P   V
Sbjct: 64  DYFAFCNGVSDKPYSSETESLWEDAGEEALQIVLGSEDGNARLDSAIKKGLNKDAPW--V 121

Query: 70  LLAGFPCQPFSQAG 83
           L+ G PCQ +S  G
Sbjct: 122 LIGGPPCQAYSMVG 135


>gi|332858346|ref|XP_003316965.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 2 [Pan
           troglodytes]
          Length = 770

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 555 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 612

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 613 KKNIEEWGPFDLVIGGSPCNDLS 635


>gi|332858344|ref|XP_003316964.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 1 [Pan
           troglodytes]
          Length = 833

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 555 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 612

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 613 KKNIEEWGPFDLVIGGSPCNDLS 635


>gi|332858342|ref|XP_514580.3| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 5 [Pan
           troglodytes]
          Length = 853

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 632

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 633 KKNIEEWGPFDLVIGGSPCNDLS 655


>gi|332249027|ref|XP_003273664.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B [Nomascus
           leucogenys]
          Length = 868

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 590 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 647

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 648 KKNIEEWGPFDLVIGGSPCNDLS 670


>gi|297706862|ref|XP_002830246.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like, partial
           [Pongo abelii]
          Length = 751

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 473 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 530

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 531 KKNIEEWGPFDLVIGGSPCNDLS 553


>gi|297260031|ref|XP_001107440.2| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 3 [Macaca
           mulatta]
          Length = 823

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 545 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 602

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 603 KKNIEEWGPFDLVIGGSPCNDLS 625


>gi|296199844|ref|XP_002747338.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 4
           [Callithrix jacchus]
          Length = 728

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 513 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 570

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 571 KKNIEEWGPFDLVIGGSPCNDLS 593


>gi|296199842|ref|XP_002747337.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 3
           [Callithrix jacchus]
          Length = 770

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 555 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 612

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 613 KKNIEEWGPFDLVIGGSPCNDLS 635


>gi|296199840|ref|XP_002747336.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 2
           [Callithrix jacchus]
          Length = 845

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 567 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 624

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 625 KKNIEEWGPFDLVIGGSPCNDLS 647


>gi|296199838|ref|XP_002747335.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 1
           [Callithrix jacchus]
          Length = 853

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 632

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 633 KKNIEEWGPFDLVIGGSPCNDLS 655


>gi|119596756|gb|EAW76350.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_a [Homo
           sapiens]
          Length = 812

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 632

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 633 KKNIEEWGPFDLVIGGSPCNDLS 655


>gi|28559065|ref|NP_787046.1| DNA (cytosine-5)-methyltransferase 3B isoform 6 [Homo sapiens]
 gi|6118092|gb|AAF04015.1|AF176228_1 DNA cytosine-5 methyltransferase 3B [Homo sapiens]
 gi|119596762|gb|EAW76356.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_e [Homo
           sapiens]
 gi|123231673|emb|CAM27373.1| DNA (cytosine-5-)-methyltransferase 3 beta [Homo sapiens]
          Length = 845

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 567 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 624

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 625 KKNIEEWGPFDLVIGGSPCNDLS 647


>gi|5901940|ref|NP_008823.1| DNA (cytosine-5)-methyltransferase 3B isoform 1 [Homo sapiens]
 gi|17375667|sp|Q9UBC3|DNM3B_HUMAN RecName: Full=DNA (cytosine-5)-methyltransferase 3B; Short=Dnmt3b;
           AltName: Full=DNA methyltransferase HsaIIIB; Short=DNA
           MTase HsaIIIB; Short=M.HsaIIIB
 gi|5823168|gb|AAD53063.1|AF156488_1 DNA cytosine-5 methyltransferase 3 beta 1 [Homo sapiens]
 gi|18033255|gb|AAL57040.1|AF331857_1 DNA cytosine methyltransferase 3 beta [Homo sapiens]
 gi|5748521|emb|CAB53070.1| DNA (cytosine-5-)-methyltransferase 3 beta [Homo sapiens]
 gi|108752172|gb|AAI11934.1| DNMT3B protein [synthetic construct]
 gi|110645774|gb|AAI18503.1| DNMT3B protein [synthetic construct]
 gi|119596758|gb|EAW76352.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_c [Homo
           sapiens]
 gi|119596760|gb|EAW76354.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_c [Homo
           sapiens]
 gi|261857548|dbj|BAI45296.1| DNA (cytosine-5-)-methyltransferase 3 beta [synthetic construct]
          Length = 853

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 575 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 632

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 633 KKNIEEWGPFDLVIGGSPCNDLS 655


>gi|28559063|ref|NP_787045.1| DNA (cytosine-5)-methyltransferase 3B isoform 3 [Homo sapiens]
 gi|5823166|gb|AAD53062.1|AF156487_1 DNA cytosine-5 methyltransferase 3 beta 3 [Homo sapiens]
 gi|5748520|emb|CAB53069.1| DNA (cytosine-5-)-methyltransferase 3 beta [Homo sapiens]
 gi|119596757|gb|EAW76351.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_b [Homo
           sapiens]
 gi|119596759|gb|EAW76353.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_b [Homo
           sapiens]
          Length = 770

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 555 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 612

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 613 KKNIEEWGPFDLVIGGSPCNDLS 635


>gi|28559061|ref|NP_787044.1| DNA (cytosine-5)-methyltransferase 3B isoform 2 [Homo sapiens]
 gi|5748522|emb|CAB53071.1| DNA (cytosine-5-)-methyltransferase 3 beta [Homo sapiens]
 gi|119596761|gb|EAW76355.1| DNA (cytosine-5-)-methyltransferase 3 beta, isoform CRA_d [Homo
           sapiens]
          Length = 833

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 555 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 612

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 613 KKNIEEWGPFDLVIGGSPCNDLS 635


>gi|182438468|ref|YP_001826187.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
          subsp. griseus NBRC 13350]
 gi|178466984|dbj|BAG21504.1| putative 5-methylcytosine methyltransferase [Streptomyces griseus
          subsp. griseus NBRC 13350]
          Length = 448

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G GG+ +          VE     E +  +  T  A    T    D+A++   D
Sbjct: 19 IVDLFAGPGGLDIAAT-IMKDEGVESIG-VEWDDATRATRAAAGLLTTDVKDVAELGPCD 76

Query: 64 --IPDHDVLLAGFPCQPFSQAG 83
            + +  VL  G PCQ FS AG
Sbjct: 77 PSVVEATVLTGGPPCQSFSVAG 98


>gi|241997518|ref|XP_002433408.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
 gi|215490831|gb|EEC00472.1| DNA (cytosine-5)-methyltransferase, putative [Ixodes scapularis]
          Length = 414

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 19/85 (22%)

Query: 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------------TLIFGDIAKI 59
          GI   LE        +  ++ E    + + +  NFP               ++ G     
Sbjct: 14 GISCGLEAVGVS---DTLWAIESLEVAARAFSLNFPKATVFVQDCNSFLKEVLEGQETNA 70

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQ 81
          K Q  P   + D L  G PCQ +S 
Sbjct: 71 KGQRFPKKGEVDFLCGGPPCQGYSL 95


>gi|302785127|ref|XP_002974335.1| hypothetical protein SELMODRAFT_30570 [Selaginella moellendorffii]
 gi|300157933|gb|EFJ24557.1| hypothetical protein SELMODRAFT_30570 [Selaginella moellendorffii]
          Length = 773

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAK 58
           + DL+CG G +   L        V+    ++ + N ++  + + N P T +  + A+
Sbjct: 217 LLDLYCGCGAMSTGLSMGAALGGVKLVTKWAVDYNEHACNSMKYNHPETEVRNEDAE 273


>gi|192823897|ref|YP_001994815.1| gp84 [Mycobacterium phage DD5]
 gi|192824173|ref|YP_001994728.1| gp87 [Mycobacterium phage Lockley]
 gi|190610403|gb|ACE79924.1| gp87 [Mycobacterium phage Lockley]
 gi|190610675|gb|ACE80193.1| gp84 [Mycobacterium phage DD5]
          Length = 223

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
          ++ DLFCG GG     +    H         +INP      Q N+  +  + GD  +   
Sbjct: 4  RLLDLFCGAGGAGRGYQLAGFHVTG-----VDINP------QPNYAGDEFVQGDALEYLD 52

Query: 62 QDIPDHDVLLAGFPCQP 78
              + DV+ A  PCQ 
Sbjct: 53 AHGHEFDVIHASPPCQS 69


>gi|296199846|ref|XP_002747339.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 5
           [Callithrix jacchus]
          Length = 694

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 479 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 536

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 537 KKNIEEWGPFDLVIGGSPCNDLS 559


>gi|68655485|emb|CAJ01711.1| putative cytosine methyltransferase [Hordeum vulgare subsp.
           vulgare]
          Length = 377

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDIA 57
            +  LF GIGG  + L +   H  +    S EI   + +  +  +  T     +   D+ 
Sbjct: 255 NVLSLFTGIGGGEVALHRLGIH--MRTVVSVEIGEVNRRILRGWWDQTQTGTLIEIADVK 312

Query: 58  KIKTQDIP-------DHDVLLAGFPC 76
            +    I          D+++ G PC
Sbjct: 313 SLTNDRIATFVRRFGGFDLVIGGSPC 338


>gi|307111085|gb|EFN59320.1| hypothetical protein CHLNCDRAFT_137705 [Chlorella variabilis]
          Length = 1369

 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 37/109 (33%)

Query: 6    DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI------ 59
            D+F G GG+   + Q     +    +  E    +   ++ N P   +F +   +      
Sbjct: 931  DIFAGCGGLSEGMHQAGAAVS---KWGIEYERPAAAAFEVNNPQAAVFCNNCNVLLHAAM 987

Query: 60   -----------------KTQDIP-----------DHDVLLAGFPCQPFS 80
                              T ++P           + D +  G PCQ +S
Sbjct: 988  TKAGLEDDCDACDDAKEGTANLPSEQMAALPLPGEVDFICGGPPCQGYS 1036


>gi|296481021|gb|DAA23136.1| DNA (cytosine-5-)-methyltransferase 3 beta [Bos taurus]
          Length = 842

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|164448558|ref|NP_861529.2| DNA (cytosine-5)-methyltransferase 3B [Bos taurus]
          Length = 844

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|31074163|gb|AAP20552.1| DNA cytosine-5 methyltransferase 3b isoform 1 [Bos taurus]
          Length = 826

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|31074169|gb|AAP20555.1| DNA cytosine-5 methyltransferase 3b isoform 5 [Bos taurus]
          Length = 785

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|31074165|gb|AAP20553.1| DNA cytosine-5 methyltransferase 3b isoform 3 [Bos taurus]
          Length = 763

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|31074167|gb|AAP20554.1| DNA cytosine-5 methyltransferase 3b isoform 4 [Bos taurus]
          Length = 735

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 566 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 623

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 624 KKNIEEWGPFDLVIGGSPCNDLS 646


>gi|332858348|ref|XP_003316966.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 3 [Pan
           troglodytes]
          Length = 728

 Score = 48.6 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 513 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 570

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 571 KKNIEEWGPFDLVIGGSPCNDLS 593


>gi|52345830|ref|NP_001004959.1| tRNA aspartic acid methyltransferase 1 [Xenopus (Silurana)
          tropicalis]
 gi|49523271|gb|AAH75465.1| MGC89267 protein [Xenopus (Silurana) tropicalis]
          Length = 379

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 36 NPYSVKTYQANFPNTLIF-GDIAKIKTQDIP--DHDVLLAGFPCQPFSQAG 83
          N  + + Y+ NFP T ++   I  +  +++     D++L   PCQPF++ G
Sbjct: 21 NTIANEVYKYNFPYTPLWPKSIEGLSLKELDALSFDMILMSPPCQPFTRIG 71


>gi|255554887|ref|XP_002518481.1| signal transducer, putative [Ricinus communis]
 gi|223542326|gb|EEF43868.1| signal transducer, putative [Ricinus communis]
          Length = 1050

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L         N +  ++ E NP++V+  + N
Sbjct: 866 IVDLFAGIGYFVLPF---LVRANAKLVYACEWNPHAVEALKRN 905


>gi|326800886|ref|YP_004318705.1| C-5 cytosine-specific DNA methylase [Sphingobacterium sp. 21]
 gi|326551650|gb|ADZ80035.1| C-5 cytosine-specific DNA methylase [Sphingobacterium sp. 21]
          Length = 531

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN--HRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAK 58
          L +TD FCG GG    + +     +  +E   +      ++ T+  NFP+T+    D++ 
Sbjct: 6  LTVTDQFCGAGGNSQAVRRYAEKCNGGIEVTLAMNHWKLAIDTHNTNFPDTMHACTDVSA 65

Query: 59 IKTQDIPDHDVLLAGFPCQPFSQAG 83
             +  P  ++L+    C   S AG
Sbjct: 66 CDPRRFPTTNILITSPECTTHSPAG 90


>gi|188581976|ref|YP_001925421.1| C-5 cytosine-specific DNA methylase [Methylobacterium populi BJ001]
 gi|179345474|gb|ACB80886.1| C-5 cytosine-specific DNA methylase [Methylobacterium populi BJ001]
          Length = 668

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           + DL CG GG     ++        +E    +   P ++ T++ N P    +  DIA ++
Sbjct: 20  VADLLCGAGGSSTGCQRALAELGLEMELVCVNHW-PVAIATHERNHPAARHYVQDIATVR 78

Query: 61  TQDI-PD--HDVLLAGFPCQPFSQA 82
              + P+   D+L+A   C   S A
Sbjct: 79  PHLLVPEGYLDLLMASPTCTHHSVA 103


>gi|83648364|ref|YP_436799.1| site-specific DNA methylase [Hahella chejuensis KCTC 2396]
 gi|83636407|gb|ABC32374.1| Site-specific DNA methylase [Hahella chejuensis KCTC 2396]
          Length = 327

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
          M    DLFCG GG      +       +     +    +V+TYQANFP   +I   I   
Sbjct: 1  MPTFVDLFCG-GGFG---ARGAVRGGGKPLLGIDAWDLAVQTYQANFPTAEVIHSKIEDT 56

Query: 60 KTQDIP---DHDVLLAGFPCQPFSQA 82
              +      DVLL    C   S A
Sbjct: 57 DPILLAKKFKPDVLLTSPECTSHSIA 82


>gi|291388726|ref|XP_002710853.1| PREDICTED: DNA cytosine-5 methyltransferase 3 beta isoform 3
           [Oryctolagus cuniculus]
          Length = 796

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 638

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K    +    D+++ G PC   S
Sbjct: 639 KKNIDEWGPFDLVIGGSPCNDLS 661


>gi|291388724|ref|XP_002710852.1| PREDICTED: DNA cytosine-5 methyltransferase 3 beta isoform 2
           [Oryctolagus cuniculus]
          Length = 859

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 638

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K    +    D+++ G PC   S
Sbjct: 639 KKNIDEWGPFDLVIGGSPCNDLS 661


>gi|291388722|ref|XP_002710851.1| PREDICTED: DNA cytosine-5 methyltransferase 3 beta isoform 1
           [Oryctolagus cuniculus]
          Length = 776

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++      VE + +SE+   S+      ++ N        +I 
Sbjct: 561 IRVLSLFDGIATGYLVLKELGIK--VEKYVASEVCEESIAVGTVKHEGNIKYVNDVRNIT 618

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K    +    D+++ G PC   S
Sbjct: 619 KKNIDEWGPFDLVIGGSPCNDLS 641


>gi|225684039|gb|EEH22323.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb03]
          Length = 1336

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+  ++F G G     LE+    RN    ++ E     + TY+AN  +     L  G + 
Sbjct: 760 LRALNIFSGGGSFDRGLEEGGAIRNE---WAVEWELAPMLTYRANQHDPERVKLFLGSVN 816

Query: 58  KI-------KTQD------IPDHDVLLAGFPCQPFS 80
                    K++D      + D + + AG PCQ +S
Sbjct: 817 DFLLRAFQGKSEDNNLVAKLGDVEFISAGSPCQGYS 852


>gi|94986833|ref|YP_594766.1| modification methylase BepI (cytosine-specific methyltransferase
          BepI) [Lawsonia intracellularis PHE/MN1-00]
 gi|94731082|emb|CAJ54445.1| Modification methylase BepI (Cytosine-specific methyltransferase
          BepI) [Lawsonia intracellularis PHE/MN1-00]
          Length = 294

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 46 NFPNTLIFGDIAKIKTQDI--PDHDVLLAGFPCQPFSQAG 83
          NF  T     IA +  ++   P  ++++ GFPCQ FS AG
Sbjct: 11 NFTGTFQLKSIADLLNENFQFPKANLVIGGFPCQDFSVAG 50


>gi|229008070|ref|ZP_04165613.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
 gi|228753185|gb|EEM02680.1| Phage-related DNA methylase [Bacillus mycoides Rock1-4]
          Length = 184

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQA 82
           +++++IP  DV   GFPCQ  S A
Sbjct: 7  DVRSEEIPKADVWCFGFPCQDISIA 31


>gi|332858350|ref|XP_003316967.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B isoform 4 [Pan
           troglodytes]
          Length = 694

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 479 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 536

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 537 KKNIEEWGPFDLVIGGSPCNDLS 559


>gi|186684463|ref|YP_001867659.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
 gi|14594706|gb|AAK68641.1| cytosine-specific DNA methyltransferase [Nostoc punctiforme PCC
           73102]
 gi|186466915|gb|ACC82716.1| DNA-cytosine methyltransferase [Nostoc punctiforme PCC 73102]
          Length = 413

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 29/105 (27%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-NPY-SVKTYQA---NFP------NTLI 52
           I   F G G + L  E           + +EI +P+ +  +Y     N P      +   
Sbjct: 7   IFSFFAGSGFLDLGFE----TSGFNIVYVNEIFSPFMAAYSYSRQILNLPLPEYGYHHGE 62

Query: 53  FGDIAKIK----TQDIPD----------HDVLLAGFPCQPFSQAG 83
            GD+ ++      Q + +              + G PC  FS  G
Sbjct: 63  IGDVTQLHEGLQAQHLRELVQDCRKSNNIVGFIGGPPCPDFSIGG 107


>gi|193785499|dbj|BAG50865.1| unnamed protein product [Homo sapiens]
          Length = 489

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 274 IRVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 331

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 332 KKNIEEWGPFDLVIGGSPCNDLS 354


>gi|195035415|ref|XP_001989173.1| GH11576 [Drosophila grimshawi]
 gi|193905173|gb|EDW04040.1| GH11576 [Drosophila grimshawi]
          Length = 327

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIP--DHDVL 70
          +    +        E   + ++N  +   Y  N+  T +   +I  +  +++   + +VL
Sbjct: 1  MHYAFKYA--QLPGEVVAALDVNTVANAVYVHNYGTTHLKTRNIQSLSEKEVRQLNANVL 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|298253558|ref|ZP_06977348.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
 gi|297532325|gb|EFH71213.1| site-specific DNA methylase [Gardnerella vaginalis 5-1]
          Length = 317

 Score = 48.6 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 45 ANFPNT-LIFGDIAKIKTQDI-----PDHDVLLAGFPCQPFSQAG 83
           N   T ++ GDI  +    +        DV++ G PCQ FSQ G
Sbjct: 2  KNHKTTKMVVGDITSLDLDAVFGTYKNKIDVIIGGPPCQGFSQKG 46


>gi|326514650|dbj|BAJ96312.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score = 48.2 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 14/86 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-----LIFGDIA 57
            +  LF GIGG  + L +   H  +    S EI   + +  +  +  T     +   D+ 
Sbjct: 478 NVLSLFTGIGGGEVALHRLGIH--MRTVVSVEIGEVNRRILRGWWDQTQTGTLIEIADVK 535

Query: 58  KIKTQDIP-------DHDVLLAGFPC 76
            +    I          D+++ G PC
Sbjct: 536 SLTNDRIATFVRRFGGFDLVIGGSPC 561


>gi|218556814|ref|YP_002389728.1| putative modification methylase NmeDIP [Escherichia coli IAI1]
 gi|218363583|emb|CAR01240.1| putative modification methylase NmeDIP [Escherichia coli IAI1]
          Length = 379

 Score = 48.2 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 22/98 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------FGD 55
           I   F G G + L  E+       E  F +E +   +  Y+ +     I           
Sbjct: 8   IFSFFSGSGFLDLGFEK----NGYEVVFVNEYHAPFMDAYKHSRKKLNIAPPRFGYAECS 63

Query: 56  IAKIKTQDIPD----------HDVLLAGFPCQPFSQAG 83
           I  ++ + I                + G PC  FS AG
Sbjct: 64  IEDVEHEKIKSSMLQLKNEGRLTGFIGGPPCPDFSVAG 101


>gi|295664785|ref|XP_002792944.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb01]
 gi|226278465|gb|EEH34031.1| DNA methyltransferase Dim-2 [Paracoccidioides brasiliensis Pb01]
          Length = 1371

 Score = 48.2 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 28/100 (28%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN--------------- 46
           L+  ++F G G     LE+    RN    ++ E     + TY+AN               
Sbjct: 795 LRALNIFSGGGSFDRGLEEGGAIRNE---WAVEWELAPMLTYRANQHDPERVKLFLGSVN 851

Query: 47  ------FPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
                 F       D+       + D + + AG PCQ +S
Sbjct: 852 DFLLRAFQGNTEANDL----VAKLGDVEFISAGSPCQGYS 887


>gi|325137454|gb|EGC60041.1| cytosine-specific methyltransferase HgiDII [Neisseria
          meningitidis ES14902]
          Length = 334

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP-------- 65
          +   ++       ++     +  P   +TY+AN     I  D+ +++ + +         
Sbjct: 1  MSYGMQSA----GIQVLAGIDYEPSCKETYEANINAKFIQADVFELQPETLEKELGLKKN 56

Query: 66 DHD-VLLAGFPCQPFSQ 81
          D D +L+   PCQ +S 
Sbjct: 57 DDDLILIGCSPCQYWSV 73


>gi|297841705|ref|XP_002888734.1| chromomethylase CMT3 [Arabidopsis lyrata subsp. lyrata]
 gi|297334575|gb|EFH64993.1| chromomethylase CMT3 [Arabidopsis lyrata subsp. lyrata]
          Length = 838

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L        +     ++ ++N ++ K+   N P T     +  + 
Sbjct: 270 TLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKSLGHNHPETH----VRNMS 325

Query: 61  TQDI 64
            +D 
Sbjct: 326 AEDF 329



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 451 VDVVCGGPPCQGIS 464


>gi|291525787|emb|CBK91374.1| hypothetical protein EUR_23870 [Eubacterium rectale DSM 17629]
          Length = 85

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 23/77 (29%)

Query: 2  LKITDLFCG---IGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          +K+ +LF G   IG       + F  R  E  FS E +          F N  ++ DI+K
Sbjct: 1  MKVLELFAGTRSIG-------KAFEQRGHE-VFSVEWSKD--------FENIDLYEDISK 44

Query: 59 IKTQDI----PDHDVLL 71
          +  +DI       DV+ 
Sbjct: 45 VTAEDILKLFGKPDVIC 61


>gi|300717794|ref|YP_003742597.1| C-5 cytosine-specific DNA methylase [Erwinia billingiae Eb661]
 gi|299063630|emb|CAX60750.1| C-5 cytosine-specific DNA methylase [Erwinia billingiae Eb661]
          Length = 236

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 27 VECFFSSEINPYSVKTY--QAN------FPNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQ 77
               + E + Y+ +    + N      FP   I+ DI     +      D++  GFPCQ
Sbjct: 22 WRTVCAVERDAYAAQVLAQRQNDRCLRPFP---IWSDICSFDGKPWRGIVDIVSGGFPCQ 78

Query: 78 PFSQAG 83
            S AG
Sbjct: 79 DISSAG 84


>gi|218247299|ref|YP_002372670.1| Site-specific DNA methylase-like protein [Cyanothece sp. PCC
          8801]
 gi|257061366|ref|YP_003139254.1| Site-specific DNA methylase-like protein [Cyanothece sp. PCC
          8802]
 gi|218167777|gb|ACK66514.1| Site-specific DNA methylase-like protein [Cyanothece sp. PCC
          8801]
 gi|256591532|gb|ACV02419.1| Site-specific DNA methylase-like protein [Cyanothece sp. PCC
          8802]
          Length = 83

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          +K   LF G G   L L Q       +   ++EI     + ++ N+P+T +I G I K  
Sbjct: 16 MKAISLFSGGGIGDLALGQA----GFKVVVANEILEDRAEVFRYNYPDTNMIIGQIIK-N 70

Query: 61 TQDIPD 66
            +I D
Sbjct: 71 ISEILD 76


>gi|167515786|ref|XP_001742234.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778858|gb|EDQ92472.1| predicted protein [Monosiga brevicollis MX1]
          Length = 356

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 42 TYQANFPNTLIFG-DIAKIKTQDIPD--HDVLLAGFPCQPFSQAG 83
           YQAN P+TLI   +I  +  + +     D+ L   PCQP+S+ G
Sbjct: 1  VYQANHPDTLIKNRNIQAVPIRQLEKLAADLWLMSPPCQPYSRQG 45


>gi|119513472|ref|ZP_01632497.1| cytosine-specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119461873|gb|EAW42885.1| cytosine-specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 400

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 29/105 (27%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-----------NTLI 52
           I   F G G + L  E    +      + +EI    +K Y+ +             +   
Sbjct: 7   IFSFFSGSGFLDLGFE----NSGFNIVYVNEIFKPFMKAYRYSREILKLPQPEYGYHEGE 62

Query: 53  FGDIAKIKT-----------QDIPDHD-VL--LAGFPCQPFSQAG 83
             D++K+ T           +D    D ++  + G PC  FS  G
Sbjct: 63  AADVSKLITGTEGQRLHELVKDCRKSDHIIGFIGGPPCPDFSVGG 107


>gi|224076221|ref|XP_002304908.1| predicted protein [Populus trichocarpa]
 gi|222847872|gb|EEE85419.1| predicted protein [Populus trichocarpa]
          Length = 1031

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L           +  ++ E NP++V+  + N
Sbjct: 875 IVDLFAGIGYFTLPF---LVRAKAKLVYACEWNPHAVEALRRN 914


>gi|239931046|ref|ZP_04687999.1| putative 5-methylcytosine methyltransferase [Streptomyces
          ghanaensis ATCC 14672]
          Length = 345

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
            D+  G GG+   LE              +  P + +T  AN P   ++  D+     +
Sbjct: 7  FVDVCAGAGGLASGLESA----GFSPALLLDNKPQACETLLANRPQWNVVCEDLIDFLPE 62

Query: 63 DIP---DHDVLLAGFP 75
          + P   D D+L AG P
Sbjct: 63 EHPEVLDVDLLSAGLP 78


>gi|15678523|ref|NP_275638.1| modification methyltransferase, cytosine-specific
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621566|gb|AAB85001.1| modification methyltransferase, cytosine-specific
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 413

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 52/128 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ----ANF---------PNT 50
           + D+F G GG+     ++    +       E++  +++T +     +             
Sbjct: 6   LIDIFAGAGGLTEGFLRS----DYTFVSHIEMDRDAIQTLETRGLYHHLQSDGDPEDYTE 61

Query: 51  LIFGDI-AKIKTQDIPDHD----------------------------------VLLAGFP 75
            + G+I  +   +  PD D                                   ++ G P
Sbjct: 62  YVNGEIGREELFRRYPDFDSELYMNLELTEENVDRVIETIRSKMNDMGTVSVDGIIGGPP 121

Query: 76  CQPFSQAG 83
           CQ +S AG
Sbjct: 122 CQAYSYAG 129


>gi|255089038|ref|XP_002506441.1| SNF2 super family [Micromonas sp. RCC299]
 gi|226521713|gb|ACO67699.1| SNF2 super family [Micromonas sp. RCC299]
          Length = 2616

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 22  FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-DHDVL 70
                V+  FS EI P+     + NF   ++F DI ++             D+P + D+L
Sbjct: 300 GQKLGVDHVFSCEIEPFKQAYIERNFAPPILFRDIRELDGDQATTAYGALVDVPGNVDML 359

Query: 71  LAGFPCQPFS 80
           +AG  C  +S
Sbjct: 360 VAGTSCVDYS 369


>gi|196019887|ref|XP_002119062.1| hypothetical protein TRIADDRAFT_63030 [Trichoplax adhaerens]
 gi|190577119|gb|EDV18452.1| hypothetical protein TRIADDRAFT_63030 [Trichoplax adhaerens]
          Length = 140

 Score = 48.2 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 38/133 (28%), Gaps = 54/133 (40%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-------------------- 42
           KI DLF G GG+             E   S+E++ ++  T                    
Sbjct: 5   KIVDLFAGPGGLGEGF--LSLKDAFEICVSAEMDTHARSTLRLRSFYRMLRNERADCLSD 62

Query: 43  ------------YQANFPN----------TLIFGDI-------AKIKTQDIPDHD---VL 70
                       Y  N  +           +  G I        +I    +   D   VL
Sbjct: 63  YYDYCNGITETAYSKNTYDLWEKSGEEARRIELGSIEGNKELRTRISLSGLDSDDKKWVL 122

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S  G
Sbjct: 123 IGGPPCQAYSLVG 135


>gi|302818367|ref|XP_002990857.1| hypothetical protein SELMODRAFT_132507 [Selaginella moellendorffii]
 gi|300141418|gb|EFJ08130.1| hypothetical protein SELMODRAFT_132507 [Selaginella moellendorffii]
          Length = 933

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAK 58
           + DL+CG G +   L        V     ++ + N ++  + + N P T +  + A+
Sbjct: 370 LLDLYCGCGAMSTGLSMGAALGGVNLVTKWAVDYNEHACNSMKYNHPETEVRNEDAE 426


>gi|219871979|ref|YP_002476354.1| moodification methylase HgaIA [Haemophilus parasuis SH0165]
 gi|219692183|gb|ACL33406.1| moodification methylase HgaIA (M.HgaIA) (Cytosine-specific
          methyltransferase HgaIA) (M.HgaI-1) [Haemophilus
          parasuis SH0165]
          Length = 358

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 18/94 (19%)

Query: 2  LKI--TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
          +KI    LF   GIG + L      +  N+    ++E+      TYQ  +P T +F GDI
Sbjct: 1  MKINAMSLFSSAGIGELDL------HKGNLNFVVANELLKKRADTYQFFYPETKMFQGDI 54

Query: 57 AKIKTQ-DI------PDHDVLLAGFPCQPFSQAG 83
          +  K + +I       +   LLA  PCQ  S  G
Sbjct: 55 SDEKLKREILLSAQQNNVQFLLATPPCQGLSSVG 88


>gi|302690426|ref|XP_003034892.1| hypothetical protein SCHCODRAFT_255903 [Schizophyllum commune H4-8]
 gi|300108588|gb|EFI99989.1| hypothetical protein SCHCODRAFT_255903 [Schizophyllum commune H4-8]
          Length = 1412

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 26/82 (31%)

Query: 27   VECFFSSEINPYSVKTYQANFPNTLIF------------GD--IAKIKTQDIP------- 65
            V+   + +  P +V TY+ N P T +             GD  +     Q  P       
Sbjct: 948  VDTALAVDYEPAAVDTYKKNHPYTTVLCADSNKVLKAVRGDKSVKDEYNQPFPPLPKPCT 1007

Query: 66   -----DHDVLLAGFPCQPFSQA 82
                   D +  G PCQ FS+A
Sbjct: 1008 ADKSSSIDFVFGGPPCQSFSKA 1029


>gi|54027887|ref|YP_122127.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54019395|dbj|BAD60763.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 541

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAKIKTQDIP 65
          F G GG  L  E+      +E   ++  NP  V+ +  NFP+   L  GD+  I    +P
Sbjct: 14 FAGWGGDSLGWEEV---PGIELRLAANHNPVCVEVHTLNFPDAEHLPPGDVEAIDLATLP 70

Query: 66 DHDVLLAGFPCQPFSQA 82
            ++  A   C  ++ A
Sbjct: 71 YTELFWASPACPAWTDA 87


>gi|302144138|emb|CBI23243.3| unnamed protein product [Vitis vinifera]
          Length = 1013

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L           +  ++ E NP++V+  Q N
Sbjct: 855 IVDLFAGIGYFVLPF---LVSAKAKLVYACEWNPHAVEALQHN 894


>gi|225444519|ref|XP_002268884.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1018

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L           +  ++ E NP++V+  Q N
Sbjct: 860 IVDLFAGIGYFVLPF---LVSAKAKLVYACEWNPHAVEALQHN 899


>gi|189192548|ref|XP_001932613.1| DNA methyltransferase Dim-2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187974219|gb|EDU41718.1| DNA methyltransferase Dim-2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1102

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
           L+   +F G G +   LE+      V+   + + +  +  T +AN  +     +  G + 
Sbjct: 655 LRGLSIFSGGGSLDRGLEEGGA---VKIHTAVDFSAEACHTQRANAQDPENLHIYCGSVD 711

Query: 58  KI--------KTQDIP---DHDVLLAGFPCQPFS 80
                       + IP   + D+++AG PC  FS
Sbjct: 712 DYLDTVLRGKDQKFIPRVGEVDLIVAGSPCPGFS 745


>gi|260871192|ref|YP_003237972.1| putative DNA methyltransferase [Escherichia coli O111:H- str.
          11128]
 gi|257767771|dbj|BAI39264.1| probable DNA methyltransferase [Escherichia coli O111:H- str.
          11128]
          Length = 1013

 Score = 47.8 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +EI P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAEIEPFPSAVLALRWPHVANLGDMKKLAKKVLAGE 65

Query: 64 IPDHDVLLAGFPC 76
          I   DVL+ G PC
Sbjct: 66 IESPDVLVGGTPC 78


>gi|258515662|ref|YP_003191884.1| hypothetical protein Dtox_2452 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779367|gb|ACV63261.1| hypothetical protein Dtox_2452 [Desulfotomaculum acetoxidans DSM
           771]
          Length = 177

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 33/110 (30%)

Query: 2   LKITDLFCGIGGIRLDLEQTF-NHRN----VECFFSSE-------------------INP 37
             +   F GIGG  L ++++   +R      E     +                   I+ 
Sbjct: 20  YTVVHFFAGIGGGALGMQKSMVEYRGLLGKFETIVGIDCDREACQDFEMITGVPAACIDL 79

Query: 38  YSVKTYQANFPNTLIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFS 80
           +S K Y A   +    G       DI        P   V+    PC+ FS
Sbjct: 80  FSRKDYIAYHGHEPPLGWQEATAEDIRNATRGIYPS--VIFMSPPCKGFS 127


>gi|324111159|gb|EGC05144.1| DNA adenine methylase [Escherichia fergusonii B253]
          Length = 1095

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +E  P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAETEPFPSAVLAHRWPHVANLGDMTKLAIKVLAGE 65

Query: 64 IPDHDVLLAGFPC 76
          I   DVL+ G PC
Sbjct: 66 IESPDVLVGGTPC 78


>gi|297683586|ref|XP_002819452.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Pongo
           abelii]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|297300061|ref|XP_001101713.2| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Macaca
           mulatta]
          Length = 505

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|296227242|ref|XP_002759290.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog
           [Callithrix jacchus]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLLPSSEEGWPIACQ 323


>gi|157098465|gb|AAH03057.2| TRMT12 protein [Homo sapiens]
          Length = 366

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 285

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 286 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 314


>gi|143679771|sp|Q4R3U8|TYW2_MACFA RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|114621593|ref|XP_519945.2| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Pan
           troglodytes]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|67971752|dbj|BAE02218.1| unnamed protein product [Macaca fascicularis]
          Length = 505

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|157388919|ref|NP_060426.2| tRNA wybutosine-synthesizing protein 2 homolog [Homo sapiens]
 gi|74726289|sp|Q53H54|TYW2_HUMAN RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|62897013|dbj|BAD96447.1| hypothetical protein FLJ20772 variant [Homo sapiens]
 gi|119612468|gb|EAW92062.1| tRNA methyltranferase 12 homolog (S. cerevisiae) [Homo sapiens]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|15079819|gb|AAH11713.1| TRNA methyltransferase 12 homolog (S. cerevisiae) [Homo sapiens]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|7021077|dbj|BAA91374.1| unnamed protein product [Homo sapiens]
          Length = 448

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|22328346|ref|NP_567268.2| Met-10+ like family protein / kelch repeat-containing protein
           [Arabidopsis thaliana]
 gi|75162488|sp|Q8W4K1|TYW23_ARATH RecName: Full=tRNA wybutosine-synthesizing protein 2/3/4; Includes:
           RecName: Full=tRNA wybutosine-synthesizing protein 3
           homolog; Includes: RecName: Full=tRNA wybutosine
           synthesizing protein 2 homolog
 gi|17064868|gb|AAL32588.1| Unknown protein [Arabidopsis thaliana]
 gi|30725408|gb|AAP37726.1| At4g04670 [Arabidopsis thaliana]
 gi|332657010|gb|AEE82410.1| tRNA wybutosine synthesizing protein 2-like protein [Arabidopsis
           thaliana]
          Length = 995

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L           +  ++ E NP++++  + N
Sbjct: 841 VVDLFAGIGYFVLPF---LVRAKAKLVYACEWNPHAIEALRRN 880


>gi|5732053|gb|AAD48952.1|AF149414_1 contains similarity to Pfam family PF00145 (C-5 cytosine-specific
           DNA methylase); score=10.4. E=0.051, N=1 [Arabidopsis
           thaliana]
 gi|7267225|emb|CAB80832.1| AT4g04670 [Arabidopsis thaliana]
          Length = 977

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L           +  ++ E NP++++  + N
Sbjct: 841 VVDLFAGIGYFVLPF---LVRAKAKLVYACEWNPHAIEALRRN 880


>gi|300702384|ref|YP_003743984.1| cytosine-specific methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299070045|emb|CBJ41330.1| putative cytosine-specific methyltransferase [Ralstonia
           solanacearum CFBP2957]
          Length = 438

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 31/105 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK- 60
           L+  D+F         L         +  F+ E +P + +T + N    LI G   K   
Sbjct: 7   LRFADVFA----GCGGLSLGLLEAGCQGVFAIERSPLAFETLRHN----LIDGKQHKFDW 58

Query: 61  TQDIPD----------------------HDVLLAGFPCQPFSQAG 83
              +P                        D+++ G PCQ FS AG
Sbjct: 59  PNWLPKEAMTCEDLLFRHGAQLDGIKGAIDLIVGGPPCQGFSTAG 103


>gi|329851058|ref|ZP_08265815.1| modification methylase HphIA [Asticcacaulis biprosthecum C19]
 gi|328839904|gb|EGF89476.1| modification methylase HphIA [Asticcacaulis biprosthecum C19]
          Length = 557

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 50/130 (38%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHR----NVECFFSSEINPYSVKTYQAN-FPNTLIFGDI-- 56
             D+F G GG+     +    +    + E   + E +P +V+T +   F      GD+  
Sbjct: 11  FIDIFAGPGGLSEGFSRFAEFQQSNVSFESRLAIEKDPIAVQTLRLRSFFRQFAPGDVPD 70

Query: 57  -------AKIKTQDIPDH------D------------------------------VLLAG 73
                   K   Q + +H      D                              VLL G
Sbjct: 71  EYYEVLRRKSSIQTLSEHAKWQSADDHVWQAELGIVEETELHQKLSERLGGASDWVLLGG 130

Query: 74  FPCQPFSQAG 83
            PCQ +S  G
Sbjct: 131 PPCQAYSLMG 140


>gi|325495666|gb|EGC93530.1| putative DNA methyltransferase [Escherichia fergusonii ECD227]
          Length = 1013

 Score = 47.8 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----D 63
            GI          +    +   + +E  P+        +P+    GD+ K+  +    +
Sbjct: 10 CSGI----EAASIAWEPLGMRPAWFAETEPFPSAVLAHRWPHVANLGDMTKLAIKVLAGE 65

Query: 64 IPDHDVLLAGFPC 76
          I   DVL+ G PC
Sbjct: 66 IESPDVLVGGTPC 78


>gi|170731368|ref|YP_001763315.1| C-5 cytosine-specific DNA methylase [Burkholderia cenocepacia
          MC0-3]
 gi|169814610|gb|ACA89193.1| C-5 cytosine-specific DNA methylase [Burkholderia cenocepacia
          MC0-3]
          Length = 333

 Score = 47.4 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 32/98 (32%)

Query: 1  MLKITDLFCGIGGIR------------LDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          M    DLFCG GG+             L L+                +  + KTY+ANFP
Sbjct: 1  MATFVDLFCG-GGLGARGAVRGGGVPLLGLDA--------------WD-LATKTYEANFP 44

Query: 49 NTLIFGD-IAKIKTQDIPDH---DVLLAGFPCQPFSQA 82
          +  +  D I  +    +      DVLL    C   S A
Sbjct: 45 SADVITDFIENVDAAALGRRYRPDVLLTSPECTSHSIA 82


>gi|75152372|sp|Q8H4D4|TYW23_ORYSJ RecName: Full=tRNA wybutosine-synthesizing protein 2/3/4; Includes:
           RecName: Full=tRNA wybutosine-synthesizing protein 3
           homolog; Includes: RecName: Full=tRNA wybutosine
           synthesizing protein 2 homolog
 gi|23616996|dbj|BAC20692.1| MET-10+related protein-like [Oryza sativa Japonica Group]
          Length = 1043

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L         N +  ++ E NP++++  Q N
Sbjct: 887 VVDLFAGIGYFVLPF---LVKANAKLVYACEWNPHALEALQRN 926


>gi|239981227|ref|ZP_04703751.1| hypothetical protein SalbJ_17454 [Streptomyces albus J1074]
 gi|291453090|ref|ZP_06592480.1| gp77 [Streptomyces albus J1074]
 gi|291356039|gb|EFE82941.1| gp77 [Streptomyces albus J1074]
          Length = 218

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK---- 58
          ++ DL CG GG+ +     ++    +     ++NP      Q N+P T    D       
Sbjct: 14 RVLDLCCGAGGLSMG----YHLAGFDVTG-VDLNP------QPNYPFTFHQADALTYLAD 62

Query: 59 -IKTQDIPDHDVLLAGFPCQPF 79
           I T  I + D++ A +PCQ F
Sbjct: 63 LITTGRIHNFDLVHASWPCQHF 84


>gi|149432729|ref|XP_001519246.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase 3 beta
           [Ornithorhynchus anatinus]
          Length = 640

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK--TYQA--NFPNTLIFGDIA 57
           +++  LF GI    L L+       V+ + +SEI   S+   T +   N        +I 
Sbjct: 408 IRVLSLFDGIATGYLVLKDLGIK--VDKYVASEICEDSIALGTVRHEGNIEYVHDVRNIT 465

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K    +    D+++ G PC   S
Sbjct: 466 KRHIDEWGPFDLVIGGSPCNDLS 488


>gi|222637134|gb|EEE67266.1| hypothetical protein OsJ_24443 [Oryza sativa Japonica Group]
          Length = 1083

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L         N +  ++ E NP++++  Q N
Sbjct: 927 VVDLFAGIGYFVLPF---LVKANAKLVYACEWNPHALEALQRN 966


>gi|220672863|emb|CAX14547.1| DNA (cytosine-5-)-methyltransferase 8 [Danio rerio]
 gi|220673212|emb|CAX13544.1| DNA (cytosine-5-)-methyltransferase 8 [Danio rerio]
          Length = 852

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKT-YQANFPNTLIFGDIAK 58
           +++  LF GI      L        ++   + +SE+   S+      +F      GDI  
Sbjct: 575 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYVASEVCEDSITVGMVRHFERITYVGDIRN 630

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           I  + I +    D+++ G PC   S 
Sbjct: 631 ITRKHIQEWGPFDLVIGGSPCNDLSI 656


>gi|195350999|ref|XP_002042024.1| GM26726 [Drosophila sechellia]
 gi|194123848|gb|EDW45891.1| GM26726 [Drosophila sechellia]
          Length = 330

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVL 70
          +    +      + E   + ++N  +   Y+ N+ + L+   +I  +  +++     ++L
Sbjct: 1  MHYAFKYA--QLDGEIVAALDVNTVANAVYEHNYGSNLVKTRNIQSLSVKEVTKLQANML 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|239622763|ref|ZP_04665794.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514760|gb|EEQ54627.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 507

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 37/140 (26%), Gaps = 60/140 (42%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQ---------------- 44
           I DLF G GG+        +       +   S E+   +  T +                
Sbjct: 6   IIDLFAGPGGLGEGFSSLKDPAGNPIFQICMSVEMEKNAHDTLRLRSFVRKIMKSDGQLP 65

Query: 45  ------------ANF-------------------PNTLIFGDIAKIK-TQDIPDH---D- 68
                        NF                     TL+ GD   +   +D       D 
Sbjct: 66  KSYLNYLDNPSAYNFQAMQLEYPDKWAAADEEAVQGTLVEGDDTFVNMAKDKLKARCGDN 125

Query: 69  -----VLLAGFPCQPFSQAG 83
                VL+ G PCQ +S  G
Sbjct: 126 YNGPLVLIGGPPCQAYSLVG 145


>gi|218199710|gb|EEC82137.1| hypothetical protein OsI_26187 [Oryza sativa Indica Group]
          Length = 1083

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L         N +  ++ E NP++++  Q N
Sbjct: 927 VVDLFAGIGYFVLPF---LVKANAKLVYACEWNPHALEALQRN 966


>gi|66392182|ref|NP_001018144.1| DNA (cytosine-5-)-methyltransferase 8 [Danio rerio]
 gi|62433269|dbj|BAD95482.1| DNA methyltransferase [Danio rerio]
          Length = 852

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKT-YQANFPNTLIFGDIAK 58
           +++  LF GI      L        ++   + +SE+   S+      +F      GDI  
Sbjct: 575 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYVASEVCEDSITVGMVRHFERITYVGDIRN 630

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           I  + I +    D+++ G PC   S 
Sbjct: 631 ITRKHIQEWGPFDLVIGGSPCNDLSI 656


>gi|332214229|ref|XP_003256234.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Nomascus
           leucogenys]
          Length = 448

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 20/90 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 238 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQVHFGDN 294

Query: 57  AKIKTQDIPDHDVLLA-------GFP--CQ 77
            K+K  +I D  V+L        G+P  CQ
Sbjct: 295 RKLKLSNIADR-VILGLIPSSEEGWPIACQ 323


>gi|257887107|ref|ZP_05666760.1| site-specific DNA-methyltransferase [Enterococcus faecium
          1,141,733]
 gi|257823161|gb|EEV50093.1| site-specific DNA-methyltransferase [Enterococcus faecium
          1,141,733]
          Length = 360

 Score = 47.4 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 22/100 (22%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------F 53
          LK+   F G+G + L  E++      E     E     ++ Y+ +     I         
Sbjct: 3  LKLFSFFSGLGLLDLGFEKS----GFEIVEVFEKKEEFLEMYKYSRKKMGIPLPKYGYSL 58

Query: 54 GDIA----------KIKTQDIPDHDVLLAGFPCQPFSQAG 83
           D+           KI+++        + G PC  FS AG
Sbjct: 59 ADVENLLDDKEFELKIESEKKEGLVGFIGGPPCPDFSIAG 98


>gi|254523796|ref|ZP_05135851.1| modification methylase [Stenotrophomonas sp. SKA14]
 gi|219721387|gb|EED39912.1| modification methylase [Stenotrophomonas sp. SKA14]
          Length = 644

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQ 62
          + DLF G GG    L+Q      ++   +   +  ++  + AN P       DI      
Sbjct: 13 VVDLFAGGGGASEGLKQA---LGIDPALAYNHDELAIGMHAANHPLTQHHREDIWHAD-- 67

Query: 63 DIPDHDV-------LLAGFPCQPFSQA 82
            P  DV         A   C  FSQA
Sbjct: 68 --PRVDVAGRPIGWFHASPDCTHFSQA 92


>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]
          Length = 1960

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 19/89 (21%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
            L +  LF GIGG  L L Q   H       S EI+       +  + NT   G      D
Sbjct: 1746 LTMLSLFSGIGGAELTLHQLGIHLKG--VVSVEISETKRNILKKWWHNTGQTGELVQIDD 1803

Query: 56   IAKIKTQDIPD-------HDVLLAGFPCQ 77
            I K+ +  +          D ++    CQ
Sbjct: 1804 IQKLASSKLESLIEKFGGFDFVI----CQ 1828


>gi|320010241|gb|ADW05091.1| hypothetical protein Sfla_3673 [Streptomyces flavogriseus ATCC
          33331]
          Length = 216

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ D  CG GG+ +     +     +     +INP        N+P   +  D      
Sbjct: 14 LRLLDACCGAGGLSMG----YYLAGYDIVG-VDINPMP------NYPFEFVQADAVDYVA 62

Query: 62 QDIPDHDVLLAGFPCQPF 79
                D++   +PCQ F
Sbjct: 63 DHGSGFDLIHGSWPCQYF 80


>gi|291546248|emb|CBL19356.1| Site-specific DNA methylase [Ruminococcus sp. SR1/5]
          Length = 182

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 9  CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHD 68
           GIG + L  +        E   + E +   ++ YQ N    +    ++ I    +PD D
Sbjct: 10 AGIGALTLGFQNA----GYEILKAYEPDRKVIEIYQENISQNVTACSLSSIDPATVPDSD 65

Query: 69 VL 70
          V 
Sbjct: 66 VW 67


>gi|302521590|ref|ZP_07273932.1| DNA-cytosine methyltransferase [Streptomyces sp. SPB78]
 gi|302430485|gb|EFL02301.1| DNA-cytosine methyltransferase [Streptomyces sp. SPB78]
          Length = 322

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          L+  D+  G GG+ L LE+       +     +    + +T + N P   ++  D+    
Sbjct: 4  LRSLDVCSGAGGLALGLERA----GFDPVLLLDNKGVACETVRVNRPRWNVLTTDLLDFD 59

Query: 61 T---QDIPDHDVLLAGFP 75
              Q+  D D+L AG P
Sbjct: 60 PVEHQETYDVDLLSAGPP 77


>gi|302186694|ref|ZP_07263367.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
          syringae 642]
          Length = 278

 Score = 47.4 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 27 VECFFSSEINPYSVKTY--QAN---FPNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFS 80
               + E + Y+ +    + N    P   I+ D+     +      DV+  GFPCQ  S
Sbjct: 22 WRTVCAVERDAYAAQVLAQRQNDGALPAFPIWSDVCSFDGKPWRGLVDVVSGGFPCQDIS 81

Query: 81 QAG 83
           AG
Sbjct: 82 AAG 84


>gi|266623773|ref|ZP_06116708.1| putative C-5 cytosine-specific DNA methylase [Clostridium
          hathewayi DSM 13479]
 gi|288864409|gb|EFC96707.1| putative C-5 cytosine-specific DNA methylase [Clostridium
          hathewayi DSM 13479]
          Length = 456

 Score = 47.1 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          I D F G GG  + +E              +I    +P +++ ++ N P+TL    DI K
Sbjct: 5  IIDCFAGGGGASVGIEMALGRP-------VDIAINHDPQAIRMHKVNHPDTLHLTEDIFK 57

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +         ++ A   C   S+A
Sbjct: 58 VDLKKYVAGRHVALMWASPDCTSHSKA 84


>gi|225432124|ref|XP_002264226.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 712

 Score = 47.1 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 19/89 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           L +  LF GIGG  L L Q   H       S EI+       +  + NT   G      D
Sbjct: 585 LTMLSLFSGIGGAELTLHQLGIHLKG--VVSVEISETKRNILKKWWHNTGQTGELVQIDD 642

Query: 56  IAKIKTQDIPD-------HDVLLAGFPCQ 77
           I K+ +  +          D ++    CQ
Sbjct: 643 IQKLASSKLESLIEKFGGFDFVI----CQ 667


>gi|326508760|dbj|BAJ95902.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L         N +  ++ E NP++++  Q N
Sbjct: 632 VVDLFSGIGYFVLPF---LVKANAKLVYACEWNPHALEALQRN 671


>gi|297837287|ref|XP_002886525.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332366|gb|EFH62784.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 732

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNT 50
           + DL+ G G +   L    +   V     ++ + N ++ ++ + N P T
Sbjct: 173 MLDLYSGCGAMSTGLCMGASLSGVNLITKWAVDNNSFACESLKLNHPET 221


>gi|255560872|ref|XP_002521449.1| conserved hypothetical protein [Ricinus communis]
 gi|223539348|gb|EEF40939.1| conserved hypothetical protein [Ricinus communis]
          Length = 686

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAK 58
           + +  LF GIGG  + L +      ++   S EI+  +    +  +  T   G   DIA 
Sbjct: 562 ISLLSLFSGIGGAEVALHRLGIR--LKRVVSVEISEVNRNIMRCWWEQTNQTGTLIDIAD 619

Query: 59  IKT----------QDIPDHDVLLAGFPC 76
           +                  D+++ G PC
Sbjct: 620 VHDLNADRLEQLMSSFGGFDLVVGGSPC 647


>gi|297809639|ref|XP_002872703.1| hypothetical protein ARALYDRAFT_490107 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318540|gb|EFH48962.1| hypothetical protein ARALYDRAFT_490107 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 996

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L              ++ E NP++++  + N
Sbjct: 841 VVDLFAGIGYFVLPF---LVRAKARLVYACEWNPHAIEALRRN 880


>gi|223939324|ref|ZP_03631204.1| DNA-cytosine methyltransferase [bacterium Ellin514]
 gi|223892037|gb|EEF58518.1| DNA-cytosine methyltransferase [bacterium Ellin514]
          Length = 374

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 18/78 (23%)

Query: 24 HRNVECFFSSEINPYSVKTYQANFPNTLIF-----------GDIAKIK---TQDIPD--- 66
              +   + E +P +  T + N  +                DI K+      ++     
Sbjct: 2  KAGWKGVIAIEKDPMAFATLKHNLVDMEEHFAWPKWLPTTSHDIKKVIRKYPSELKKLAG 61

Query: 67 -HDVLLAGFPCQPFSQAG 83
             ++  G PCQ FS  G
Sbjct: 62 KITLVAGGPPCQGFSVNG 79


>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis]
 gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]
          Length = 678

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 21/91 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +   H       S E +    K  +  + N+   G      D
Sbjct: 551 ITVLSLFSGIGGAEVALHRLGIHMKG--VVSVETSETKRKILRMWWRNSGQTGELEQIED 608

Query: 56  IAKIKTQDIPDHDVLL---AGF-------PC 76
           I K+ T+ I   D L+    GF       PC
Sbjct: 609 IQKLTTKKI---DRLIERFGGFDFVICQSPC 636


>gi|109897054|ref|YP_660309.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699335|gb|ABG39255.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
          Length = 372

 Score = 47.1 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 31/109 (28%)

Query: 1   ML--KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-----NPY-------SVKTYQAN 46
           M+  K+   F G G + L  E+       +  + +E      + Y        ++T Q  
Sbjct: 1   MMPKKLFSFFSGSGFLDLGFEK----NGFDVVYVNEYHQPFLDAYEYSRQQMKIETPQYG 56

Query: 47  FPNTLIFGDI-----------AKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           + NT I  DI             +K Q    H    + G PC  FS  G
Sbjct: 57  YDNTSIE-DIANNSSLLNKLARNVKQQKKEGHITGFIGGPPCPDFSVGG 104


>gi|299769738|ref|YP_003731764.1| C-5 cytosine-specific DNA methylase [Acinetobacter sp. DR1]
 gi|298699826|gb|ADI90391.1| C-5 cytosine-specific DNA methylase [Acinetobacter sp. DR1]
          Length = 492

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    LE+ F           +I    +P ++  ++AN PNT  F     D
Sbjct: 15 IVDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPKALAMHRANHPNTRHFCENVWD 67

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  +K  +     ++     C+ FS+A
Sbjct: 68 VDPVKVTNNQPVGLVWLSPDCKHFSKA 94


>gi|291539767|emb|CBL12878.1| Site-specific DNA methylase [Roseburia intestinalis XB6B4]
          Length = 337

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 40/115 (34%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            K+ DLF G GG+     Q+      E   + E     V T            D      
Sbjct: 5   YKMIDLFAGCGGLEDGFLQSGK---YEDVAAVEWLKPQVNTLIKRLETKWKVKD----AK 57

Query: 62  QDIPDHDV-----LLAG----------------------------FPCQPFSQAG 83
           + +   D+     L  G                             PCQ +S AG
Sbjct: 58  ERVMHFDIQREKELFEGWQDDEFGQGKGLDYFVNKVGGIDIIIGGPPCQAYSVAG 112


>gi|298492135|ref|YP_003722312.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
 gi|298234053|gb|ADI65189.1| DNA-cytosine methyltransferase ['Nostoc azollae' 0708]
          Length = 86

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 7  LFCGIGGIRLDLE-QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI---KTQ 62
          LF G GG+ L  E Q F           E++  S  TY+       + G+  ++     +
Sbjct: 24 LFAGCGGLSLGFEAQGFETHGF------EMDTDSCATYKK-----SLKGNCTQVFLTPER 72

Query: 63 DIPDHDVL 70
          ++P   V+
Sbjct: 73 ELPSATVI 80


>gi|303288149|ref|XP_003063363.1| SNF2 super family [Micromonas pusilla CCMP1545]
 gi|226455195|gb|EEH52499.1| SNF2 super family [Micromonas pusilla CCMP1545]
          Length = 2005

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 26  NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-DHDVLLAGF 74
            V+  FS EI P+     + NF   ++F DI ++             D+P + D+L+AG 
Sbjct: 51  GVDHVFSCEIEPFKQAYIERNFAPPILFRDIRELDGDQATTAYGALVDVPGNVDMLVAGT 110

Query: 75  PCQPFS 80
            C  +S
Sbjct: 111 SCVDYS 116


>gi|328948618|ref|YP_004365955.1| C-5 cytosine-specific DNA methylase [Treponema succinifaciens DSM
          2489]
 gi|328448942|gb|AEB14658.1| C-5 cytosine-specific DNA methylase [Treponema succinifaciens DSM
          2489]
          Length = 94

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY--SVKTYQANFP-NTLIFGDIAK 58
          L I D+FCG GG    L +  +  N +   S+ IN +  +++T+  N+P       ++  
Sbjct: 4  LNIVDMFCGGGGESTGLIEAAHDYNFDVNMSA-INHWERAIETHSKNYPFAEHRCENVQH 62

Query: 59 IKTQDI---PDHDVLLAGFPCQ 77
          I+ Q +    + D++ A   CQ
Sbjct: 63 IQPQTLKASKNTDLMWASPGCQ 84


>gi|229590290|ref|YP_002872409.1| putative cytosine-specific modification methylase [Pseudomonas
           fluorescens SBW25]
 gi|229362156|emb|CAY49058.1| putative cytosine-specific modification methylase [Pseudomonas
           fluorescens SBW25]
          Length = 637

 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           + DLF G GG    + + +   +V    +   NP ++  ++AN P T  +  D+ ++   
Sbjct: 26  VVDLFAGGGGASTGIARAYREPDV----AVNHNPIALAVHRANHPKTAHYVADVFEVDPV 81

Query: 63  DIP---DHDVLLAGFPCQPFSQA 82
                    +L A   C+  S+A
Sbjct: 82  MATGGQPVGILWASPDCRHHSKA 104


>gi|27497152|gb|AAO17342.1| methylase [Neisseria polysaccharea]
          Length = 90

 Score = 47.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE 34
              DLF GIGG R+ ++    +   E  FSSE
Sbjct: 62 FTFIDLFAGIGGFRIAMQ----NLGGEYVFSSE 90


>gi|127454|sp|P25283|MTG2_HAEGA RecName: Full=Modification methylase HgaIB; Short=M.HgaIB;
          AltName: Full=Cytosine-specific methyltransferase
          HgaIB; AltName: Full=M.HgaI-2
 gi|216712|dbj|BAA14378.1| HgaI methylase [Avibacterium paragallinarum]
 gi|435624|dbj|BAA04207.1| HgaI methylase 2 [Avibacterium paragallinarum]
 gi|1090539|prf||2019268B HgaI restriction methylase:ISOTYPE=2
          Length = 358

 Score = 47.1 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 18/94 (19%)

Query: 2  LKI--TDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
          +KI    LF   GIG + L      +  N+    ++E+      TYQ  +P T +F GDI
Sbjct: 1  MKINAMSLFSSAGIGELDL------HKGNLNFVVANELLKKRADTYQFFYPETKMFQGDI 54

Query: 57 AKIKTQ-DI------PDHDVLLAGFPCQPFSQAG 83
          +  K + +I       +   LLA  PCQ  S  G
Sbjct: 55 SDEKLKREILLSAQQNNVKFLLATPPCQGLSSVG 88


>gi|299756527|ref|XP_001829400.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
 gi|298411717|gb|EAU92360.2| hypothetical protein CC1G_00579 [Coprinopsis cinerea okayama7#130]
          Length = 1235

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 32/108 (29%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           LK  D+F G+ G    L +      +E   + EI+P + +T + N P T++         
Sbjct: 757 LKTLDVFAGVLGYSKGLSEGSGC--MEITHAIEISPSAAQTAKRNSPKTVVINQCANAVF 814

Query: 55  -------------------DIAKIKTQDIP---DHDVLLAGFPCQPFS 80
                              D +K K   +P     DV++ GFPCQ  S
Sbjct: 815 QYAKKSHEGFQVAPPVQLWD-SKEKIPSLPPPGSFDVIVIGFPCQAHS 861


>gi|170739778|ref|YP_001768433.1| DNA-cytosine methyltransferase [Methylobacterium sp. 4-46]
 gi|168194052|gb|ACA15999.1| DNA-cytosine methyltransferase [Methylobacterium sp. 4-46]
          Length = 423

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 20/80 (25%)

Query: 24  HRNVECFFSSEINPYSVKTYQAN-----------FPN-----TLIFGDIAKIKTQDI--- 64
               +  F+ E + ++  T + N           +P            + +    ++   
Sbjct: 24  KAGWKGLFAIEKDAFAFDTLKHNLIDDGDRYRFVWPEWLEKKPWTIEALMEAHPDELVNL 83

Query: 65  -PDHDVLLAGFPCQPFSQAG 83
               D+L  G PCQ FS AG
Sbjct: 84  RGKIDLLAGGPPCQGFSSAG 103


>gi|27529842|dbj|BAC53936.1| chromomethylase-like protein [Nicotiana tabacum]
          Length = 741

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L    +   V+    ++ ++N Y+  + + N P T     +    
Sbjct: 177 NLLDLYSGCGAMSTGLCLGADIGGVKLVTKWAVDLNQYACDSLKWNHPETA----VRNES 232

Query: 61  TQDI 64
             D 
Sbjct: 233 ADDF 236


>gi|317401191|gb|EFV81837.1| DNA-cytosine methyltransferase [Achromobacter xylosoxidans C54]
          Length = 523

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 57/135 (42%)

Query: 4   ITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKT--YQANF--------PNT 50
           + DLF G GG+                    S E +P + +T   +A F        P+ 
Sbjct: 9   VIDLFAGPGGLCEGFSSVVDASGAAGFAVNISIEKDPVAHRTLLLRAIFRKFPKGQVPDC 68

Query: 51  ---LIFGDIAKIKTQDIPDHDV-------------------------------------- 69
               + G I+  + Q + D D+                                      
Sbjct: 69  YYDYVRGKIS--REQFLCDPDIRVAAKDAAKEARHAELGVTPPEAVDAWIREALGGRTDW 126

Query: 70  -LLAGFPCQPFSQAG 83
            L+ G PCQ +S AG
Sbjct: 127 VLIGGPPCQAYSLAG 141


>gi|169977312|emb|CAQ18903.1| chromomethylase [Nicotiana sylvestris]
 gi|169977314|emb|CAQ18904.1| chromomethylase [Nicotiana sylvestris]
 gi|169977316|emb|CAQ18905.1| chromomethylase [Nicotiana sylvestris]
 gi|169977318|emb|CAQ18906.1| chromomethylase [Nicotiana sylvestris]
          Length = 741

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+ G G +   L    +   V+    ++ ++N Y+  + + N P T     +    
Sbjct: 177 NLLDLYSGCGAMSTGLCLGADIGGVKLVTKWAVDLNQYACDSLKWNHPETA----VRNES 232

Query: 61  TQDI 64
             D 
Sbjct: 233 ADDF 236


>gi|312132821|ref|YP_004000160.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|311773786|gb|ADQ03274.1| DNA-cytosine methyltransferase [Bifidobacterium longum subsp.
           longum BBMN68]
          Length = 517

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%)

Query: 47  FPNTLIFGDIAKIKTQDIPD---------HDVLLAGFPCQPFSQAG 83
           F   LI GDI ++    I D          D++  G PCQ FS AG
Sbjct: 103 FDGRLIVGDIRRLNA-FIEDRGSALVHGEVDLVSGGPPCQSFSLAG 147



 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
             +LF G GG+ L L             ++E++    +T+  N
Sbjct: 8  TFIELFAGCGGLSLGLRSA----GFREVMANELSSMPAETFALN 47


>gi|145350330|ref|XP_001419563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579795|gb|ABO97856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 278

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DLF GIG   L   Q   +      ++ E NP S +  + N
Sbjct: 124 TVVDLFAGIGYYTL---QLLKNAGAAKVYACEWNPNSCEALRHN 164


>gi|302188331|ref|ZP_07265004.1| putative cytosine-specific modification methylase [Pseudomonas
           syringae pv. syringae 642]
          Length = 599

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT- 61
           + DLF G GG    + + +   +V    +   NP ++  ++AN P T  +  D+ ++   
Sbjct: 24  VVDLFAGGGGASTGISRAYREPDV----AVNHNPIALAVHRANHPQTDHYVADVFEVDPV 79

Query: 62  --QDIPDHDVLLAGFPCQPFSQA 82
                    +L A   C+  S+A
Sbjct: 80  LATRGQPVGILWASPDCRHHSKA 102


>gi|218847945|ref|YP_002454784.1| type II DNA-methyltransferase, putative [Bacillus cereus G9842]
 gi|218546076|gb|ACK98469.1| type II DNA-methyltransferase, putative [Bacillus cereus G9842]
          Length = 463

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + +  +  G GGI        + +        E+     +  + NF + ++  D+  I  
Sbjct: 126 ISLLSVCAG-GGI--GTASFVDTQYFTPVAEIELEEDCCEAIRHNFSSFIMNCDVRDINV 182

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             +P  DV+    PC  FS  G
Sbjct: 183 --VPKVDVINCTIPCNNFSTLG 202


>gi|161621506|gb|ABX75257.1| cytosine-5-methyltransferase [Malus x domestica]
          Length = 107

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      ++   S EI+  +     + +  T   G      D
Sbjct: 22  INVLSLFTGIGGAEVALHRLG--VPLKNVISVEISEVNRNVVSSWWEQTNQRGRLQHVDD 79

Query: 56  IAKIKTQ-------DIPDHDVLLAGFPC 76
           + ++          +    D+++ G PC
Sbjct: 80  VQQLNGDHLEQYMSEFGGFDLVIGGSPC 107


>gi|325141454|gb|EGC63930.1| cytosine-specific methyltransferase HgiDII [Neisseria
          meningitidis 961-5945]
 gi|325199103|gb|ADY94559.1| cytosine-specific methyltransferase HgiDII [Neisseria
          meningitidis G2136]
          Length = 330

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--------DHD-VLLA 72
               ++     +  P   +TY+AN     I  D+ +++ + +         D D +L+ 
Sbjct: 1  MQSAGIQVLAGIDYEPSCKETYEANINAKFIQADVFELQPETLEKELGLKKNDDDLILIG 60

Query: 73 GFPCQPFSQ 81
            PCQ +S 
Sbjct: 61 CSPCQYWSV 69


>gi|315585938|gb|ADU40319.1| site-specific DNA-methyltransferase [Helicobacter pylori 35A]
          Length = 68

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIA 57
            I + F G GG  L   Q    +  +  + ++I+  ++KT   N        +    I 
Sbjct: 3  YNICEFFVGAGGSHLGFIQ----QGFKTLYVNDIDKDALKTLLHNNKELKDAIIDQTSIT 58

Query: 58 KIKTQD 63
          +I  ++
Sbjct: 59 EIDPKN 64


>gi|169600411|ref|XP_001793628.1| hypothetical protein SNOG_03039 [Phaeosphaeria nodorum SN15]
 gi|160705432|gb|EAT89770.2| hypothetical protein SNOG_03039 [Phaeosphaeria nodorum SN15]
          Length = 1146

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIKT 61
            LF G G +   +E+     +V+     E +  ++ T +AN  N        G +    +
Sbjct: 532 SLFSGGGNLDRGIEE-GGAVDVQTV--VEWDAAAIHTQRANARNPTTQQFFCGSVDDHLS 588

Query: 62  QDIPDHD-----------VLLAGFPCQPFS 80
             I   D           ++LAG PC  FS
Sbjct: 589 MAIAGSDDQLVPYIGCVNIILAGSPCPGFS 618


>gi|124262880|ref|YP_001023350.1| C-5 cytosine-specific DNA methylase [Methylibium petroleiphilum
           PM1]
 gi|124262126|gb|ABM97115.1| C-5 cytosine-specific DNA methylase [Methylibium petroleiphilum
           PM1]
          Length = 473

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 9   CGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIFGDIAKIK------ 60
            GIG +     +      VEC   F++EI    V   +    +  I  D   +       
Sbjct: 135 SGIGVLDRAAHEGLEQAGVECRLAFANEIREDCV---EHMCDHNPIV-DQHTVTLTAPMQ 190

Query: 61  --------TQDIPDHDVLLAGFPCQPFSQAG 83
                      +P  DVL+ G PC   S+AG
Sbjct: 191 ELAFDEWAMSRLPKVDVLVGGIPCSGASRAG 221


>gi|156549014|ref|XP_001607336.1| PREDICTED: similar to DNA (cytosine-5-)-methyltransferase [Nasonia
            vitripennis]
          Length = 1682

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 17/94 (18%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFG--DIA- 57
            +   ++F G GG+ L L ++   + +   ++ E +  +  T+Q N P+ T++ G  DI  
Sbjct: 1224 MTSLEIFAGCGGLSLGLRESGVIKKLGS-WAIESDVDAANTFQLNNPDITVLVGHPDIVL 1282

Query: 58   ------KIKTQD---IPDHD---VLLAGFPCQPF 79
                  + +  D   +P  D    L A  PC+ +
Sbjct: 1283 KNAMKGEFEDSDGKLLPRKDDVEFLCATLPCENY 1316


>gi|126540960|emb|CAM46957.1| DNA (cytosine-5-)-methyltransferase 5 [Danio rerio]
          Length = 1296

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 3    KITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
            ++  LF GI  G +    L  +       VE + +SE++  SV     N    + +  D+
Sbjct: 1013 RVLSLFDGIATGYLVLRDLGFK-------VEKYVASEVDEESVTISMVNHEGKITYVDDV 1065

Query: 57   AKIKTQDIPD---HDVLLAGFPCQP 78
             KI  + I      D+L+ G PC  
Sbjct: 1066 KKITRKHIDKWGPFDLLIGGSPCND 1090


>gi|66472742|ref|NP_001018315.1| DNA methyltransferase dnmt5 [Danio rerio]
 gi|62433263|dbj|BAD95479.1| DNA methyltransferase [Danio rerio]
          Length = 1297

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 16/85 (18%)

Query: 3    KITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDI 56
            ++  LF GI  G +    L  +       VE + +SE++  SV     N    + +  D+
Sbjct: 1014 RVLSLFDGIATGYLVLRDLGFK-------VEKYVASEVDEESVTISMVNHEGKITYVDDV 1066

Query: 57   AKIKTQDIPD---HDVLLAGFPCQP 78
             KI  + I      D+L+ G PC  
Sbjct: 1067 KKITRKHIDKWGPFDLLIGGSPCND 1091


>gi|154482791|ref|ZP_02025239.1| hypothetical protein EUBVEN_00468 [Eubacterium ventriosum ATCC
          27560]
 gi|149736386|gb|EDM52272.1| hypothetical protein EUBVEN_00468 [Eubacterium ventriosum ATCC
          27560]
          Length = 193

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
            G + ++K  +I   D++  G PCQ  S AG
Sbjct: 2  HVGSVTELKGDEIQPVDIITFGSPCQDLSIAG 33


>gi|297788908|ref|XP_002862484.1| hypothetical protein ARALYDRAFT_920657 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297308026|gb|EFH38742.1| hypothetical protein ARALYDRAFT_920657 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 163

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 23/96 (23%)

Query: 5  TDLFCGIGGIRLDLE----QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKI 59
           D+F G GG+   LE    Q F   + +     +         +A         D I+ +
Sbjct: 6  LDIFAGCGGLSYGLEKAVAQAFKQNHPDATVFVD---NCNVILRAIMEKCGDVDDCISTV 62

Query: 60 KTQDIP---------------DHDVLLAGFPCQPFS 80
          +  ++                  D +  G PCQ FS
Sbjct: 63 EAAELAAKLDDNQKSTLPLPGQVDFINGGPPCQGFS 98


>gi|301632038|ref|XP_002945098.1| PREDICTED: hypothetical protein LOC100485715 [Xenopus (Silurana)
          tropicalis]
          Length = 368

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 51 LIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           I+ DI            D+++ GFPCQ  S AG
Sbjct: 10 PIWSDIRTFDGAAWRGSVDIVVGGFPCQDISFAG 43


>gi|226292283|gb|EEH47703.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb18]
          Length = 2038

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 18  LEQTFNHR-NVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP 65
            ++ F    N+   FS+EI+P+  ++Y Q NF   +IF D+ ++   D          +P
Sbjct: 142 FKRIFGKTLNIHHLFSAEIDPF-KQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVP 200

Query: 66  -DHDVLLAGFPCQPFS 80
            D D+L+ GF C  FS
Sbjct: 201 ADLDLLIVGFSCVDFS 216


>gi|295673276|ref|XP_002797184.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
 gi|226282556|gb|EEH38122.1| DNA repair protein rad8 [Paracoccidioides brasiliensis Pb01]
          Length = 2095

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 18  LEQTFNHR-NVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP 65
            ++ F    N+   FS+EI+P+  ++Y Q NF   +IF D+ ++   D          +P
Sbjct: 141 FKRIFGKTLNIHHLFSAEIDPF-KQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVP 199

Query: 66  -DHDVLLAGFPCQPFS 80
            D D+L+ GF C  FS
Sbjct: 200 ADLDLLIVGFSCVDFS 215


>gi|225628987|ref|ZP_03787021.1| Modification methylase HgiDI [Brucella ceti str. Cudo]
 gi|261319385|ref|ZP_05958582.1| modification methylase [Brucella pinnipedialis B2/94]
 gi|261756709|ref|ZP_06000418.1| DNA-cytosine methyltransferase [Brucella sp. F5/99]
 gi|265986615|ref|ZP_06099172.1| modification methylase [Brucella pinnipedialis M292/94/1]
 gi|225616833|gb|EEH13881.1| Modification methylase HgiDI [Brucella ceti str. Cudo]
 gi|261298608|gb|EEY02105.1| modification methylase [Brucella pinnipedialis B2/94]
 gi|261736693|gb|EEY24689.1| DNA-cytosine methyltransferase [Brucella sp. F5/99]
 gi|264658812|gb|EEZ29073.1| modification methylase [Brucella pinnipedialis M292/94/1]
          Length = 274

 Score = 46.7 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 41 KTYQANFPNTLIFGDIAKIKTQDIPDH-----DVLLAGFPCQPFSQAG 83
          +TY+ N    +   D+  I     P       D++  G PCQ +S AG
Sbjct: 2  ETYRHNVGRQVHKHDLKDIFAVA-PVIGGMAPDLITGGPPCQDYSVAG 48


>gi|168034417|ref|XP_001769709.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679058|gb|EDQ65510.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 700

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFG 54
           + DL+CG G +   +    N   +     ++ ++N ++  + + N P T +  
Sbjct: 152 LLDLYCGCGAMSTGICLGMNLAGINLVTKWAVDLNEFACMSLKYNHPETTVRN 204



 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 317 DCDVICGGPPCQGAS 331


>gi|325127388|gb|EGC50322.1| cytosine-specific methyltransferase HgiDII [Neisseria
          meningitidis N1568]
 gi|325204962|gb|ADZ00416.1| cytosine-specific methyltransferase HgiDII [Neisseria
          meningitidis M01-240355]
          Length = 330

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--------DHD-VLLA 72
               ++     +  P   +TY+AN     I  D+ +++ + +         D D +L+ 
Sbjct: 1  MQSAGIQVLAGIDYEPSCKETYEANINAKFIQADVFELQPETLEKELGLKKNDDDLILIG 60

Query: 73 GFPCQPFSQ 81
            PCQ +S 
Sbjct: 61 CSPCQYWSV 69


>gi|323487264|ref|ZP_08092566.1| site-specific DNA methylase [Clostridium symbiosum WAL-14163]
 gi|323399405|gb|EGA91801.1| site-specific DNA methylase [Clostridium symbiosum WAL-14163]
          Length = 456

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 17/91 (18%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-G 54
          +K  I D F G GG  + +E              +I    +P +++ ++ N P+TL    
Sbjct: 1  MKDLIIDCFAGGGGASVGMEMALGRP-------VDIAINHDPQALRMHKVNHPDTLHLTE 53

Query: 55 DIAKIKTQDI---PDHDVLLAGFPCQPFSQA 82
          DI ++  +         ++ A   C   S+A
Sbjct: 54 DIFEVDLKQYVAGRHVALMWASPDCTSHSKA 84


>gi|83645622|ref|YP_434057.1| site-specific DNA methylase [Hahella chejuensis KCTC 2396]
 gi|83633665|gb|ABC29632.1| Site-specific DNA methylase [Hahella chejuensis KCTC 2396]
          Length = 555

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
           + D F G GG    +EQ           S +I    +P +++ ++ N P T  + + +  
Sbjct: 24  VVDNFAGGGGASTGIEQAIGR-------SVDIAINHDPEAIELHKLNHPQTEHYCESVWN 76

Query: 59  IKTQDI---PDHDVLLAGFPCQPFSQA 82
           I  +++       +      C+ FS+A
Sbjct: 77  IDPREVCKGRPVGLAWFSPDCKHFSRA 103


>gi|301626439|ref|XP_002942400.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like [Xenopus
           (Silurana) tropicalis]
          Length = 937

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           +++  LF GI    L L+    H  +E + +SE+   S+          +++ GD+  I 
Sbjct: 659 IRVLSLFDGIATGLLVLKDLGIH--IERYIASEVCEDSITVGMVRHQGKIMYVGDVRNIT 716

Query: 61  TQDIPD---HDVLLAGFPCQPFSQ 81
            + I +    D+++ G PC   S 
Sbjct: 717 RKHIQEWGPFDLVIGGSPCNDLSI 740


>gi|302694677|ref|XP_003037017.1| hypothetical protein SCHCODRAFT_103476 [Schizophyllum commune H4-8]
 gi|300110714|gb|EFJ02115.1| hypothetical protein SCHCODRAFT_103476 [Schizophyllum commune H4-8]
          Length = 1190

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 36/114 (31%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-------- 53
           L++ D+F G+G   + L      R ++     E +P + KT  ANF    ++        
Sbjct: 697 LRVLDVFGGVGAFSMGL--ADGSRCMKLTHLIEKSPSAAKTVIANFSGVQVYNQCANTVL 754

Query: 54  --------------GD-------IAKIKTQDIP-----DHDVLLAGFPCQPFSQ 81
                         GD       I        P     D DV++AGFPCQ  S 
Sbjct: 755 EYMVKRHDKVTLPSGDPVPAPMQIYDANIACPPPIKPGDIDVVVAGFPCQSHSL 808


>gi|73948843|ref|XP_849815.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 530

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD---IAK 58
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD   I +
Sbjct: 257 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSITQ 309

Query: 59  IKTQDIPDHDVLLAGFPCQPFSQ 81
              Q+    D+++ G PC   S 
Sbjct: 310 KHIQEWGPLDLVIGGSPCNGLSI 332


>gi|111657454|ref|ZP_01408203.1| hypothetical protein SpneT_02001348 [Streptococcus pneumoniae
          TIGR4]
 gi|149012556|ref|ZP_01833553.1| hypothetical protein CGSSp19BS75_10018 [Streptococcus pneumoniae
          SP19-BS75]
 gi|169834352|ref|YP_001694057.1| hypothetical protein SPH_0667 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|182683502|ref|YP_001835249.1| type II DNA modification methyltransferase, truncation
          [Streptococcus pneumoniae CGSP14]
 gi|255964981|ref|YP_003104753.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae TIGR4]
 gi|303255235|ref|ZP_07341308.1| type II DNA modification methyltransferase, truncation
          [Streptococcus pneumoniae BS455]
 gi|303260059|ref|ZP_07346032.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae SP-BS293]
 gi|303261243|ref|ZP_07347191.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae SP14-BS292]
 gi|303263908|ref|ZP_07349829.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS397]
 gi|303267056|ref|ZP_07352927.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS457]
 gi|303269271|ref|ZP_07355045.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS458]
 gi|85720560|gb|ABC75785.1| type II DNA modification methyltransferase, truncation
          [Streptococcus pneumoniae TIGR4]
 gi|147763361|gb|EDK70298.1| hypothetical protein CGSSp19BS75_10018 [Streptococcus pneumoniae
          SP19-BS75]
 gi|168996854|gb|ACA37466.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6]
 gi|182628836|gb|ACB89784.1| type II DNA modification methyltransferase, truncation
          [Streptococcus pneumoniae CGSP14]
 gi|302597776|gb|EFL64849.1| type II DNA modification methyltransferase, truncation
          [Streptococcus pneumoniae BS455]
 gi|302637377|gb|EFL67864.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae SP14-BS292]
 gi|302638754|gb|EFL69216.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae SP-BS293]
 gi|302641168|gb|EFL71541.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS458]
 gi|302643384|gb|EFL73660.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS457]
 gi|302646313|gb|EFL76539.1| type II DNA modification methyltransferase [Streptococcus
          pneumoniae BS397]
          Length = 54

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
           DLF G GG    L+++     ++   + EI+  +VKTY+ N P  
Sbjct: 7  IDLFNGAGGTTSGLKKS----GIDVQVAVEIDSVAVKTYKLNNPEV 48


>gi|317499855|ref|ZP_07958093.1| site-specific DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898757|gb|EFV20790.1| site-specific DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 419

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          I D F G GG  + +E            S +I    +P ++  ++ N PNTL    DI +
Sbjct: 2  IIDCFAGGGGASVGIEMALGR-------SVDIAINHDPDAILMHKTNHPNTLHLTEDIFR 54

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +         ++ A   C   S+A
Sbjct: 55 VDLKKYVKGRHVALMWASPDCTSHSKA 81


>gi|302558936|ref|ZP_07311278.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302476554|gb|EFL39647.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 431

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL CGIGG  L   +           + + +P + +  +AN  + L  GD+ +++  D
Sbjct: 135 VADLCCGIGGDALAFARAGIR-----VLAVDRDPLTCQVARAN-ADALGLGDLIEVREAD 188

Query: 64  IPDHDVLLAGF 74
           + + D   AG+
Sbjct: 189 VTEVD--TAGY 197


>gi|222630097|gb|EEE62229.1| hypothetical protein OsJ_17016 [Oryza sativa Japonica Group]
          Length = 551

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  ++ GIGG  + L +      ++C  S + +  + K  +  + NT   G + +I T
Sbjct: 413 LRVLSIYSGIGGAAIALHRLG--IPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINT 470

Query: 62  -------------QDIPDHDVLLAG 73
                        ++    D+++ G
Sbjct: 471 IWKLKINVLEDLVKEFGGFDIIIGG 495


>gi|218196042|gb|EEC78469.1| hypothetical protein OsI_18342 [Oryza sativa Indica Group]
          Length = 693

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  ++ GIGG  + L +      ++C  S + +  + K  +  + NT   G + +I T
Sbjct: 555 LRVLSIYSGIGGAAIALHRLG--IPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINT 612

Query: 62  -------------QDIPDHDVLLAG 73
                        ++    D+++ G
Sbjct: 613 IWKLKINVLEDLVKEFGGFDIIIGG 637


>gi|160875076|ref|YP_001554392.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
 gi|160860598|gb|ABX49132.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
          Length = 516

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +P ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGIAWAIGR-------SVDIAINHDPDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  ++       D+      C+ FS+A
Sbjct: 58 IDPVQATAGKPVDLAWFSPDCKHFSKA 84


>gi|160875117|ref|YP_001554433.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
 gi|160860639|gb|ABX49173.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
 gi|315267308|gb|ADT94161.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS678]
          Length = 516

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +P ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGIAWAIGR-------SVDIAINHDPDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  ++       D+      C+ FS+A
Sbjct: 58 IDPVQATAGKPVDLAWFSPDCKHFSKA 84


>gi|115461927|ref|NP_001054563.1| Os05g0133900 [Oryza sativa Japonica Group]
 gi|113578114|dbj|BAF16477.1| Os05g0133900 [Oryza sativa Japonica Group]
          Length = 667

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  ++ GIGG  + L +      ++C  S + +  + K  +  + NT   G + +I T
Sbjct: 542 LRVLSIYSGIGGAAIALHRLG--IPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINT 599

Query: 62  -------------QDIPDHDVLLAG 73
                        ++    D+++ G
Sbjct: 600 IWKLKINVLEDLVKEFGGFDIIIGG 624


>gi|50878401|gb|AAT85176.1| putative DNA methyltransferase DMT106 [Oryza sativa Japonica Group]
 gi|215693344|dbj|BAG88726.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 680

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L++  ++ GIGG  + L +      ++C  S + +  + K  +  + NT   G + +I T
Sbjct: 542 LRVLSIYSGIGGAAIALHRLG--IPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINT 599

Query: 62  -------------QDIPDHDVLLAG 73
                        ++    D+++ G
Sbjct: 600 IWKLKINVLEDLVKEFGGFDIIIGG 624


>gi|160876612|ref|YP_001555928.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
 gi|160862134|gb|ABX50668.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS195]
 gi|315268808|gb|ADT95661.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS678]
          Length = 516

 Score = 46.3 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +P ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGIAWAIGR-------SVDIAINHDPDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  ++       D+      C+ FS+A
Sbjct: 58 IDPVQATAGKPVDLAWFSPDCKHFSKA 84


>gi|304409175|ref|ZP_07390796.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS183]
 gi|307303178|ref|ZP_07582933.1| C-5 cytosine-specific DNA methylase [Shewanella baltica BA175]
 gi|304352996|gb|EFM17393.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS183]
 gi|306913538|gb|EFN43960.1| C-5 cytosine-specific DNA methylase [Shewanella baltica BA175]
          Length = 284

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +P ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGIAWAIGR-------SVDIAINHDPDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  ++       D+      C+ FS+A
Sbjct: 58 IDPVQATAGKPVDLAWFSPDCKHFSKA 84


>gi|226088552|dbj|BAH37021.1| chromomethylase OsMET2c [Oryza sativa Japonica Group]
          Length = 749

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   LKITDLFCGIGGIRLD--LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           L + DL+CG GG+     L       N+   ++ + +  + ++++ N P T +  +   
Sbjct: 214 LSLLDLYCGCGGMSTGLCLGARGGGVNLSARWAIDDDEIACESFRNNHPETRVRNETTD 272



 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 387 DVDVVCGGPPCQGIS 401


>gi|218196311|gb|EEC78738.1| hypothetical protein OsI_18945 [Oryza sativa Indica Group]
          Length = 1325

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   LKITDLFCGIGGIRLD--LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           L + DL+CG GG+     L       N+   ++ + +  + ++++ N P T +  +   
Sbjct: 748 LSLLDLYCGCGGMSTGLCLGARGGGVNLSARWAIDDDEIACESFRNNHPETRVRNETTD 806



 Score = 37.4 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 59  IKTQDIP--DHDVLLAGFPCQPFS 80
           ++    P  D DV+  G PCQ  S
Sbjct: 928 LRPSKFPLGDVDVVCGGPPCQGIS 951


>gi|222630668|gb|EEE62800.1| hypothetical protein OsJ_17603 [Oryza sativa Japonica Group]
          Length = 1190

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   LKITDLFCGIGGIRLD--LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           L + DL+CG GG+     L       N+   ++ + +  + ++++ N P T +  +   
Sbjct: 571 LSLLDLYCGCGGMSTGLCLGARGGGVNLSARWAIDDDEIACESFRNNHPETRVRNETTD 629



 Score = 37.4 bits (87), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 59  IKTQDIP--DHDVLLAGFPCQPFS 80
           ++    P  D DV+  G PCQ  S
Sbjct: 793 LRPSKFPLGDVDVVCGGPPCQGIS 816


>gi|134117273|ref|XP_772863.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255481|gb|EAL18216.1| hypothetical protein CNBK2340 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 2291

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 20/79 (25%)

Query: 13  GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---------- 62
           G+ L  E           FS EI P+     + NF   ++F D+ ++  +          
Sbjct: 352 GLTLAFEH---------VFSCEIEPFKQAYIERNFAPPVLFRDVTELGKKRAHTAYGSMV 402

Query: 63  DIP-DHDVLLAGFPCQPFS 80
           ++P D D+L+AG  C  +S
Sbjct: 403 EVPGDVDILIAGTSCVDYS 421


>gi|291531290|emb|CBK96875.1| DNA-methyltransferase (dcm) [Eubacterium siraeum 70/3]
          Length = 425

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 37/136 (27%), Gaps = 57/136 (41%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PNTL------ 51
            I +LF GIG     L+      N     + E + ++   Y A       P T+      
Sbjct: 6   NIVELFSGIGSQAKALKNLGYKVN--TLGTCEWDLHAFIAYDAIHSSPELPETIARMGKA 63

Query: 52  -------------------------------------------IFGDIAKIKTQDIPD-H 67
                                                       + D++ +    +P+  
Sbjct: 64  EILKKLESYTLSNNGKEKMEFKTLRSYSEESIRRIIAAIERNKNYVDVSSLTGDQMPEGV 123

Query: 68  DVLLAGFPCQPFSQAG 83
           D+L   FPCQ  S  G
Sbjct: 124 DILTYSFPCQDLSNVG 139


>gi|195114574|ref|XP_002001842.1| GI17066 [Drosophila mojavensis]
 gi|193912417|gb|EDW11284.1| GI17066 [Drosophila mojavensis]
          Length = 331

 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQDIPD--HDVL 70
          +    +      + E   + ++N  +   Y  N+   ++   +I  +  ++I     ++L
Sbjct: 1  MHYAFKYA--QLSGEVVAAMDVNTVANAVYAHNYGATSVKTRNIQSLAEKEIKKLNANML 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|239927639|ref|ZP_04684592.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291435979|ref|ZP_06575369.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291338874|gb|EFE65830.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 387

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          I DLF G         +      +      E +  + KT  A   +  I  D+A   T  
Sbjct: 2  IVDLFSG----PRGWSEGLRLLGLSDVGL-EWDTAACKTAHA-AGHATIQCDVAAYPTVP 55

Query: 64 IP-DHDVLLAGFPCQPFSQAG 83
                 L+A  PCQ +S+AG
Sbjct: 56 FAGRIKGLIASPPCQAWSRAG 76


>gi|300868938|ref|ZP_07113543.1| putative modification methylase NmeDIP [Oscillatoria sp. PCC 6506]
 gi|300333061|emb|CBN58735.1| putative modification methylase NmeDIP [Oscillatoria sp. PCC 6506]
          Length = 399

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 31/106 (29%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-NPYSVKTYQA-----NFP------NTL 51
           I   F G G + L  E +      +  + +EI +P+    Y+      N P      +  
Sbjct: 7   IFSFFAGSGFLDLGFELS----GFKIAYINEIFSPFMQA-YRYSRKCLNLPLPEYGYSEG 61

Query: 52  IFGDIAKIKTQD------------IPDHDVL--LAGFPCQPFSQAG 83
              D+ ++   +              ++D++  +AG PC  FS  G
Sbjct: 62  EEADVTRLTAGEAALKLRELMQDARKNNDIIGFIAGPPCPDFSVGG 107


>gi|115443362|ref|XP_001218488.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188357|gb|EAU30057.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 2106

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 14  IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QD 63
           +R   E+ F        FS+EI P+     + NF    IF D+A++K           + 
Sbjct: 135 LRTHFERNFE---FRHLFSAEIVPFKQAYIERNFHPPFIFRDVAELKDRVAQTAYGSLEK 191

Query: 64  IPD-HDVLLAGFPCQPFS 80
           IP   D+L+AGF C  FS
Sbjct: 192 IPKNADILIAGFSCVDFS 209


>gi|310658846|ref|YP_003936567.1| c-5 cytosine-specific DNA methylase [Clostridium sticklandii DSM
          519]
 gi|308825624|emb|CBH21662.1| C-5 cytosine-specific DNA methylase [Clostridium sticklandii]
          Length = 466

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    +E              +I    +P ++  ++ N PNT  + + +  
Sbjct: 4  IIDNFAGGGGASTGIEAALGR-------YIDIAINHDPDAILMHKTNHPNTKHYCESVWD 56

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +   ++      D+      C+ FS+A
Sbjct: 57 VDPLEVTQGNSVDLAWFSPDCKHFSKA 83


>gi|73974594|ref|XP_851753.1| PREDICTED: similar to homolog of yeast tRNA methyltransferase
           [Canis familiaris]
          Length = 439

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRKNLDINGVAHRCQIHFGDN 285

Query: 57  AKIKTQDIPD 66
            K+K  +I D
Sbjct: 286 RKLKLSNIAD 295


>gi|306829494|ref|ZP_07462684.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC
          6249]
 gi|304428580|gb|EFM31670.1| DNA (cytosine-5-)-methyltransferase [Streptococcus mitis ATCC
          6249]
          Length = 389

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAK--- 58
          K   LF  +G      E   +   V+   ++E+     + Y   +P+  +I GDI     
Sbjct: 11 KALSLFSNVG----IAETYLSDVGVDVCVANELLEERCRFYSHLYPDVSIIQGDITDSEV 66

Query: 59 -----IKTQDIPDHDVLLAGFPCQPFSQAG 83
               +  ++    ++++A  PCQ  S AG
Sbjct: 67 FDKVMLTAKE-AGVEMVIATPPCQGMSNAG 95


>gi|296314673|ref|ZP_06864614.1| modification methylase HpaII [Neisseria polysaccharea ATCC 43768]
 gi|296838500|gb|EFH22438.1| modification methylase HpaII [Neisseria polysaccharea ATCC 43768]
          Length = 68

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE 34
              DLF GIGG R+ ++    +   E  FSSE
Sbjct: 40 FTFIDLFAGIGGFRIAMQ----NLGGEYVFSSE 68


>gi|168058860|ref|XP_001781424.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667161|gb|EDQ53798.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1008

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DLF GIG   L           +  ++ E NP ++   + N
Sbjct: 851 TVVDLFAGIGYYTLPF---LLKGGAKLVYTCEWNPNAILALRHN 891


>gi|261840146|gb|ACX99911.1| cytosine-specific methyltransferase [Helicobacter pylori 52]
          Length = 343

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 43/106 (40%)

Query: 2  LKITD---------------LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +   +                FC      + L               EI+  +  T + N
Sbjct: 1  MTSIELFAGAGGLALGLELAGFC-----HIGL--------------VEIDRSACSTLKKN 41

Query: 47 FPN-TLIFGDIAKIKTQDIP--------DHDVLLAGFPCQPFSQAG 83
           P   ++  DI  +  QD+         D D+L  G PCQ FS AG
Sbjct: 42 RPLWNVLEKDITTLVEQDLEQIFCIKCGDLDLLSGGCPCQSFSYAG 87


>gi|255077988|ref|XP_002502574.1| TWY3 methyltransferase [Micromonas sp. RCC299]
 gi|226517839|gb|ACO63832.1| TWY3 methyltransferase [Micromonas sp. RCC299]
          Length = 1107

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DLF GIG   L   Q   H  V   F+ E NP SV   + N
Sbjct: 499 TVVDLFAGIGYYTL---QLLRHAGVAKVFACEWNPNSVAALRRN 539


>gi|193077633|gb|ABO12463.2| DNA cytosine methyltransferase [Acinetobacter baumannii ATCC 17978]
          Length = 525

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           I D F G GG    LE   N         +   P ++  ++AN P+   +  D+  +   
Sbjct: 24  IVDFFAGGGGASTGLEMGLNRPVYVAVNHN---PKAISMHEANHPHAKHYVQDVFAVDPI 80

Query: 63  DIPD-HDV--LLAGFPCQPFSQA 82
           DI D H V    A   C   SQA
Sbjct: 81  DICDGHQVGWFHASPDCTHHSQA 103


>gi|153815830|ref|ZP_01968498.1| hypothetical protein RUMTOR_02075 [Ruminococcus torques ATCC
          27756]
 gi|145846855|gb|EDK23773.1| hypothetical protein RUMTOR_02075 [Ruminococcus torques ATCC
          27756]
          Length = 91

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          I D F G GG  + +E            S +I    +P ++  ++ N PNTL    DI +
Sbjct: 6  IIDCFAGGGGASVGIEMALGR-------SVDIAINHDPDAILMHKTNHPNTLHLTEDIFR 58

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +         ++ A   C   S+A
Sbjct: 59 VDLKKYVKGRHVALMWASPDCTSHSKA 85


>gi|260221752|emb|CBA30630.1| hypothetical protein Csp_C24510 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 515

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY 43
           K+ DLF G GG+          +  E   S+E+   + KT 
Sbjct: 3  YKVIDLFAGPGGLGEGFASLKEGKAFEIVISAEMEESAHKTL 44



 Score = 34.3 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 69  VLLAGFPCQPFSQAG 83
           V++ G PCQ +S  G
Sbjct: 121 VVIGGPPCQAYSLVG 135


>gi|169633047|ref|YP_001706783.1| putative C-5 cytosine-specific DNA methylase [Acinetobacter
           baumannii SDF]
 gi|169151839|emb|CAP00671.1| putative C-5 cytosine-specific DNA methylase [Acinetobacter
           baumannii]
          Length = 517

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           I D F G GG    LE   N         +   P ++  ++AN P+   +  D+  +   
Sbjct: 24  IVDFFAGGGGASTGLEMGLNRPVYVAVNHN---PKAISMHEANHPHAKHYIQDVFAVDPI 80

Query: 63  DIPD-HDV--LLAGFPCQPFSQA 82
           DI D H V    A   C   SQA
Sbjct: 81  DICDGHQVGWFHASPDCTHHSQA 103


>gi|186682875|ref|YP_001866071.1| C-5 cytosine-specific DNA methylase [Nostoc punctiforme PCC
          73102]
 gi|186465327|gb|ACC81128.1| C-5 cytosine-specific DNA methylase [Nostoc punctiforme PCC
          73102]
          Length = 1180

 Score = 45.9 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           KI  +  G+G + L              ++ E +      Y  N  + +    +  +  
Sbjct: 5  FKIGSIASGMG-MHL---HGLKQIGGVPVWAIECDEAIAHCYHQNHKSEVYIKKVQDVAP 60

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           D+ D D+L+    C+  S A
Sbjct: 61 SDLADIDLLITTLSCKNASIA 81


>gi|303291186|ref|XP_003064879.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453550|gb|EEH50859.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 280

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           +L++ +L  G       +E+      +EC  +  +I+               I  DI K 
Sbjct: 41  ILRVLELCAGSSSFSKAVERICKKLGIECKVYRLDIDSRC---------TVEIVADIEKW 91

Query: 60  KTQDIPD-HDVLLAGFPCQPFSQA 82
             Q      D++    PC  +S A
Sbjct: 92  TCQSKKGFFDIIWCSPPCTNYSNA 115


>gi|195387886|ref|XP_002052623.1| GJ17650 [Drosophila virilis]
 gi|194149080|gb|EDW64778.1| GJ17650 [Drosophila virilis]
          Length = 332

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVL 70
          +    +        E   + ++N  +   Y  N+ +T +   +I  +  +++     ++L
Sbjct: 1  MHYAFKYA--QLPGEVVAALDVNTVANAVYAHNYGSTKVKTRNIQSLSEKEVTKLGANML 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|326319209|ref|YP_004236881.1| DNA-cytosine methyltransferase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376045|gb|ADX48314.1| DNA-cytosine methyltransferase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 526

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQ---TFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFG- 54
           + DLF G GG+             R      S E +P + +T         FP+  + G 
Sbjct: 15  VIDLFAGPGGLCEGFSSVVDATGSRRFAVKISIEKDPVAHRTLLLRAIFRQFPDGKVPGC 74

Query: 55  --D-IA-KIKTQDI---------------------------PDHD-------------VL 70
             D +  KI  +                              + D             VL
Sbjct: 75  YYDYVRGKINREQFLAHPEIKAVAEHAAREARCAELGVTPASEVDGWIREALGDQTDWVL 134

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S AG
Sbjct: 135 IGGPPCQAYSLAG 147


>gi|262279847|ref|ZP_06057632.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262260198|gb|EEY78931.1| DNA cytosine methyltransferase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 555

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          I D F G GG    LE   N         +   P ++  ++AN P+   +  D+  +   
Sbjct: 24 IVDFFAGGGGASTGLEMGLNRPVHVAVNHN---PKAIAMHEANHPHAKHYVQDVFAVDPV 80

Query: 63 DIPD 66
          +I D
Sbjct: 81 EICD 84


>gi|332535196|ref|ZP_08411002.1| modification methylase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035361|gb|EGI71862.1| modification methylase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 512

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 54/134 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTY--QANFPN--------- 49
           + DLF G GG+   +            +   S E + ++ KT   +A F +         
Sbjct: 8   VIDLFAGPGGLGEGISAAKTEVGKSPFQIGISVEKDFHAHKTLTTRAFFRSLKKKSQPLD 67

Query: 50  ---TLIFGDIAKIKTQDI-PDH-------------------------------D-----V 69
                + G I + +  ++ PD                                D     V
Sbjct: 68  NYYNYLHGKITRDELFELHPDIATEANQETLNGAKELGKDNKLIHKRIKELVKDHKGPKV 127

Query: 70  LLAGFPCQPFSQAG 83
           L+ G PCQ +S AG
Sbjct: 128 LIGGPPCQAYSLAG 141


>gi|268595503|ref|ZP_06129670.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae 35/02]
 gi|268597557|ref|ZP_06131724.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae FA19]
 gi|268602062|ref|ZP_06136229.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID18]
 gi|268604402|ref|ZP_06138569.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID1]
 gi|268682863|ref|ZP_06149725.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID332]
 gi|268685010|ref|ZP_06151872.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae SK-92-679]
 gi|268687288|ref|ZP_06154150.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae SK-93-1035]
 gi|291043038|ref|ZP_06568771.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae DGI2]
 gi|268548892|gb|EEZ44310.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae 35/02]
 gi|268551345|gb|EEZ46364.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae FA19]
 gi|268586193|gb|EEZ50869.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID18]
 gi|268588533|gb|EEZ53209.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID1]
 gi|268623147|gb|EEZ55547.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae PID332]
 gi|268625294|gb|EEZ57694.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae SK-92-679]
 gi|268627572|gb|EEZ59972.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae SK-93-1035]
 gi|291013041|gb|EFE05014.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae DGI2]
          Length = 205

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 24 HRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--------DHD-VLLAGF 74
             ++     +      +TY+AN     I  DI +++ + +         D D +L+   
Sbjct: 1  SAGIQVLAGIDYELSCKETYEANINAKFIQADIFELQPETLEKELGLKKNDDDLILIGCS 60

Query: 75 PCQPFSQ 81
          PCQ +S 
Sbjct: 61 PCQYWSV 67


>gi|296109369|ref|YP_003616318.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295434183|gb|ADG13354.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 331

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDIA 57
           + D+F G+G   +  +           +S +INPY+++  + N      +    I  D+ 
Sbjct: 196 VIDMFAGVGPFSIACKMAKK------IYSIDINPYAIELLKKNIELNKVYKIEPILDDVR 249

Query: 58  KIKTQ 62
            +  +
Sbjct: 250 NVNLE 254


>gi|38233728|ref|NP_939495.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199989|emb|CAE49658.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 192

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 19/84 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           ++ DLF G G   L LE     R  E     E NP +V   + N      P+     D+ 
Sbjct: 46  RVLDLFAGSG--ALGLEAA--SRGAESVVLVENNPKAVAVIRHNIAVVGHPHV----DVV 97

Query: 58  KIKTQDI------PDHDVLLAGFP 75
           ++K             D++LA  P
Sbjct: 98  EMKASTYVASAPKNHFDMVLADPP 121


>gi|332884377|gb|EGK04642.1| hypothetical protein HMPREF9456_03404 [Dysgonomonas mossii DSM
          22836]
          Length = 212

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIK 60
          +KI + + GIGG R          N     + E +P     YQ  +PN T+I GD  +  
Sbjct: 1  MKILNCYAGIGGNRK------LWGNEREITAVEFDPKIAAIYQDLYPNDTVIVGDAHQYL 54

Query: 61 TQDIPDHDVLLAGFPCQPFSQ 81
           +   + D +    PC   S 
Sbjct: 55 LEHYQEFDFIWCSPPCPTHSI 75


>gi|196048102|ref|ZP_03115280.1| type II DNA-methyltransferase, putative [Bacillus cereus 03BB108]
 gi|196021358|gb|EDX60087.1| type II DNA-methyltransferase, putative [Bacillus cereus 03BB108]
          Length = 464

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--LIFGDIAKI 59
           + +  +  G GGI        + +        E+    V+  + NF +   +  GDI  I
Sbjct: 126 ISLLSVCAG-GGI--GTAAFVDTQYFTPTAEIELEDDCVEVLRHNFGDKSFVFNGDIRDI 182

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              +IP  DV+    PC  ++Q G
Sbjct: 183 N--EIPKSDVMNITLPCNKWTQIG 204


>gi|33416520|gb|AAH55850.1| TRNA methyltranferase 12 homolog (S. cerevisiae) [Mus musculus]
          Length = 446

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 228 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 284

Query: 57  AKIKTQDIPD 66
            K+K  DI D
Sbjct: 285 RKLKLSDIAD 294


>gi|118150645|ref|NP_080918.2| tRNA wybutosine-synthesizing protein 2 homolog [Mus musculus]
 gi|81895986|sp|Q8BG71|TYW2_MOUSE RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|26327311|dbj|BAC27399.1| unnamed protein product [Mus musculus]
 gi|26345714|dbj|BAC36508.1| unnamed protein product [Mus musculus]
 gi|26347897|dbj|BAC37597.1| unnamed protein product [Mus musculus]
 gi|148697363|gb|EDL29310.1| mCG51593 [Mus musculus]
          Length = 446

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 228 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 284

Query: 57  AKIKTQDIPD 66
            K+K  DI D
Sbjct: 285 RKLKLSDIAD 294


>gi|12859716|dbj|BAB31750.1| unnamed protein product [Mus musculus]
          Length = 423

 Score = 45.5 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 228 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDN 284

Query: 57  AKIKTQDIPD 66
            K+K  DI D
Sbjct: 285 RKLKLSDIAD 294


>gi|74012168|ref|XP_850348.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 531

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD+  +  
Sbjct: 258 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSVTQ 310

Query: 62  QDIPD---HDVLLAGFPCQPFSQ 81
           + I +    D+++ G PC   S 
Sbjct: 311 KHIQEWGPLDLVIGGSPCNGLSI 333


>gi|319777371|ref|YP_004137022.1| hypothetical protein MfeM64YM_0647 [Mycoplasma fermentans M64]
 gi|238809546|dbj|BAH69336.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038446|gb|ADV34645.1| Hypothetical Protein MfeM64YM_0647 [Mycoplasma fermentans M64]
          Length = 72

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 12/53 (22%)

Query: 22 FNHRNVECFFSSEINPYSVKTYQANF------------PNTLIFGDIAKIKTQ 62
           N+   +  F+SE +  + K Y  NF            P     GDI  I  +
Sbjct: 1  MNNLGGQRVFASEWDKNARKAYATNFKNSKNLFNENNEPTNFFAGDITLINPK 53


>gi|330927820|ref|XP_003302014.1| hypothetical protein PTT_13685 [Pyrenophora teres f. teres 0-1]
 gi|311322847|gb|EFQ89880.1| hypothetical protein PTT_13685 [Pyrenophora teres f. teres 0-1]
          Length = 1252

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 20/95 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECF-FSSEINPYSVKTYQANFPN----TLIFGDI 56
           L+   +F G G +   LE+    +      FSSE    +  T +AN  +     +  G +
Sbjct: 654 LRGLSIFSGGGSLDRGLEEGGAVKIHTAVDFSSE----ACHTQRANAKDPGGLHIYCGSV 709

Query: 57  AK-----IKTQD------IPDHDVLLAGFPCQPFS 80
                  +  +D      + + D+++AG PC  FS
Sbjct: 710 DDYLDAVLTRKDQKLIARVGEVDLIVAGSPCPGFS 744


>gi|74012244|ref|XP_850916.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 531

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD+  +  
Sbjct: 258 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSVTQ 310

Query: 62  QDIPD---HDVLLAGFPCQPFSQ 81
           + I +    D+++ G PC   S 
Sbjct: 311 KHIQEWGPLDLVIGGSPCNGLSI 333


>gi|73948636|ref|XP_849220.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 531

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD+  +  
Sbjct: 258 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSVTQ 310

Query: 62  QDIPD---HDVLLAGFPCQPFSQ 81
           + I +    D+++ G PC   S 
Sbjct: 311 KHIQEWGPLDLVIGGSPCNGLSI 333


>gi|224060119|ref|XP_002300046.1| DNA methyltransferase [Populus trichocarpa]
 gi|222847304|gb|EEE84851.1| DNA methyltransferase [Populus trichocarpa]
          Length = 344

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 23/92 (25%)

Query: 2   LKITDLFCGIGGIRLDLEQTF----NHRNVEC------FFSSEINPYSVKTYQANFPNTL 51
           + +  LF GIGG  + L +      N  +VE         S        +T      N +
Sbjct: 219 INVLSLFSGIGGAEVALHRLGIRLKNVVSVEISNVNRSIMSCWWEQT-NQT-----GNLI 272

Query: 52  IFGDIAKIKTQDIP-------DHDVLLAGFPC 76
              D+  +    +          D+++ G PC
Sbjct: 273 HIEDVQHLTADRLEQLMNMYGSFDLVVGGSPC 304


>gi|74012646|ref|XP_853590.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 531

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD+  +  
Sbjct: 258 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSVTQ 310

Query: 62  QDIPD---HDVLLAGFPCQPFSQ 81
           + I +    D+++ G PC   S 
Sbjct: 311 KHIQEWGPLDLVIGGSPCNGLSI 333


>gi|73948652|ref|XP_849522.1| PREDICTED: similar to DNA methyltransferase 3A isoform 1 [Canis
           familiaris]
          Length = 327

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++  LF GI    L L+       V+C+ +SE+   S+          +  GD+  +  
Sbjct: 144 IRVLSLFDGIATGLLVLKDLG--IQVDCYIASEVCKDSITV-----GKIMYVGDVCSVTQ 196

Query: 62  QDIPD---HDVLLAGFPCQPFSQ 81
           + I +    D+++ G PC   S 
Sbjct: 197 KHIQEWGPLDLVIGGSPCNGLSI 219


>gi|195443002|ref|XP_002069228.1| GK21086 [Drosophila willistoni]
 gi|194165313|gb|EDW80214.1| GK21086 [Drosophila willistoni]
          Length = 221

 Score = 45.5 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 18 LEQTFNHR--NVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIKTQDIPD--HDVLL 71
          +   FN+     E   + ++N  + K Y  N+  P  L   +I  +  +++     ++LL
Sbjct: 1  MHYAFNYTKLQGEVVAAMDVNTVANKVYAHNYKNPKYLKTRNIQSLSEKEVNKLNANMLL 60

Query: 72 AGFPCQPFSQAG 83
             PCQP ++ G
Sbjct: 61 MSPPCQPHTRQG 72


>gi|260890544|ref|ZP_05901807.1| hypothetical protein GCWU000323_01722 [Leptotrichia hofstadii
          F0254]
 gi|260859786|gb|EEX74286.1| site-specific DNA-methyltransferase [Leptotrichia hofstadii
          F0254]
          Length = 425

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 25 RNVECFFSSEINPYSVKTYQANFPN----TLIFGD--IAKIKTQDIP--------DHDVL 70
           N    + ++     ++T   N PN      I  D  I  I  +++         + DV 
Sbjct: 3  ENFRTVYVNDFIKECLETLVYNNPNLLEEKAIIDDTSIENINPKELRKKLNVKKGEIDVF 62

Query: 71 LAGFPCQPFSQAG 83
            G  C+ FS AG
Sbjct: 63 FGGVVCKSFSLAG 75


>gi|226525311|gb|ACO70910.1| conserved hypothetical protein [uncultured Verrucomicrobia
           bacterium]
          Length = 187

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DLF G G   L LE     R        E +  +V T   NF  T + G +      
Sbjct: 43  RVLDLFAGSG--ALGLEAL--SRGAASVTFVEKDRAAVATIHRNFEKTRLSGTVQAADVF 98

Query: 63  DIPD-------HDVLLAGFPCQPFSQA 82
              D        D++LA  P   +S+A
Sbjct: 99  SFLDRFAAPESFDLILADPP---YSKA 122


>gi|297160040|gb|ADI09752.1| hypothetical protein SBI_06632 [Streptomyces bingchenggensis
          BCW-1]
          Length = 205

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ DL CG GG+ +     +     +     +  P      Q N+P T    D      
Sbjct: 10 LRVLDLCCGAGGLSMG----YYLAGFDVVG-VDNRP------QPNYPFTFHQADALTFPL 58

Query: 62 QDIPDHDVLLAGFPCQPF 79
                D++ A +PCQ F
Sbjct: 59 D---GFDLVHASWPCQHF 73


>gi|242010423|ref|XP_002425967.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212509958|gb|EEB13229.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 232

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L       H   +  ++ E NP +V+  + N
Sbjct: 136 VIDLFAGIGYFTLPY---IVHAKAKFVYACEWNPVAVEALRRN 175


>gi|260432507|ref|ZP_05786478.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260416335|gb|EEX09594.1| C-5 cytosine-specific DNA methylase [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 689

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I D F G GG    +E             S     ++  ++AN P TL    +I  +   
Sbjct: 7  IIDSFAGGGGASTGIEIALGRSPDVAINHS---AAALALHKANHPYTLHLDSNIWDVDPL 63

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
          +I       +L A   C+ FS+A
Sbjct: 64 EIANGRKVGLLWASPDCKHFSRA 86


>gi|71065540|ref|YP_264267.1| C-5 cytosine-specific DNA methylase [Psychrobacter arcticus
          273-4]
 gi|71038525|gb|AAZ18833.1| probable C-5 cytosine-specific DNA methylase [Psychrobacter
          arcticus 273-4]
          Length = 488

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    LE  F           +I    +P ++  ++ N P T  + + +  
Sbjct: 10 IIDNFAGGGGTSTGLEAAFGRP-------VDIAINHDPEAIAMHRINHPGTKHYCESVWD 62

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          I+ + +       ++     C+ FS+A
Sbjct: 63 IEPKSVTGNQPVGLVWLSPDCKHFSKA 89


>gi|256839926|ref|ZP_05545435.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Parabacteroides sp. D13]
 gi|256738856|gb|EEU52181.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Parabacteroides sp. D13]
          Length = 296

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 67 HDVLLAGFPCQPFSQAG 83
           DVL  GFPCQPFS AG
Sbjct: 4  VDVLTGGFPCQPFSVAG 20


>gi|154247625|ref|YP_001418583.1| C-5 cytosine-specific DNA methylase [Xanthobacter autotrophicus
          Py2]
 gi|154161710|gb|ABS68926.1| C-5 cytosine-specific DNA methylase [Xanthobacter autotrophicus
          Py2]
          Length = 579

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 7  LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQDI- 64
          LF G+GG    LE+           +   +P +V  ++   P+T     D+ +   +++ 
Sbjct: 15 LFAGMGGGCDGLEEA----GFHVHVAINHDPVAVAVHERRHPHTKHLRCDVFEADPREVC 70

Query: 65 --PDHDVLLAGFPCQPFSQA 82
                 L A   C  FS A
Sbjct: 71 RGRGVRALHASPDCTHFSVA 90


>gi|149540272|ref|XP_001517753.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 421

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H  V    + E NP++V   + N           +  GD 
Sbjct: 233 LVDLYAGIGYFTLPF---LVHAGVAFVHACEWNPHAVAALRRNLELNGVADRCQIHAGDN 289

Query: 57  AKIKTQDIPD 66
            K+  +D  D
Sbjct: 290 RKLDLEDRAD 299


>gi|95108172|emb|CAD14571.2| putative bacteriophage cytosine-specific methyltransferase
          protein [Ralstonia solanacearum GMI1000]
          Length = 193

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+PY+    +         P  +   DI  ++ +D+  +                 
Sbjct: 4  YYNEIDPYAAAWLRNLIAAGHIAPGDVDERDIQDVRPEDLRGYKQHHFFAGVGVWSLALR 63

Query: 68 -----D---VLLAGFPCQPFSQAG 83
               D   V     PCQPFSQAG
Sbjct: 64 RAGWPDDRLVWTGSCPCQPFSQAG 87


>gi|240047714|ref|YP_002961102.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae
           HRC/581]
 gi|239985286|emb|CAT05299.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae]
          Length = 419

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 60/141 (42%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANF------------ 47
           +++ + F GIG     +     + +   +   + E +  ++  Y A              
Sbjct: 4   IRVLETFSGIGAQHKAISNLNKNNSVKFKVVGTVEWDARAIIAYSAIHHNLFKNYKKIIA 63

Query: 48  PNTLIFGD---------------------IAK------------IKTQDIPDH------- 67
            + L   D                     I K            I   ++ D        
Sbjct: 64  KHNLTNHDQVNSFLEQFVISLDSKKPSQIIRKDLFFKQVLASAIISANNLGDIINLDVNK 123

Query: 68  ------DVLLAGFPCQPFSQA 82
                 D++   FPCQ  S A
Sbjct: 124 VANLKPDLITYSFPCQGLSVA 144


>gi|331270912|ref|YP_004385623.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
 gi|329127304|gb|AEB77248.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
          Length = 349

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 52 IFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           +GDI+ I   ++PD D+    FPC   S +G
Sbjct: 41 NYGDISIIDPNELPDFDLFNFSFPCTDISVSG 72


>gi|194215085|ref|XP_001916357.1| PREDICTED: similar to TRNA methyltransferase 12 homolog (S.
           cerevisiae) [Equus caballus]
          Length = 439

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLEINGVAHQCQIHFGDN 285

Query: 57  AKIKTQDIPD 66
            K+K  +I D
Sbjct: 286 RKLKLSNIAD 295


>gi|301787627|ref|XP_002929227.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog
           [Ailuropoda melanoleuca]
          Length = 439

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRKNLDINGVADRCQIHFGDN 285

Query: 57  AKIKTQDIPD 66
            K+K  +I D
Sbjct: 286 RKLKLSNIAD 295


>gi|281348316|gb|EFB23900.1| hypothetical protein PANDA_019352 [Ailuropoda melanoleuca]
          Length = 441

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 231 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRKNLDINGVADRCQIHFGDN 287

Query: 57  AKIKTQDIPD 66
            K+K  +I D
Sbjct: 288 RKLKLSNIAD 297


>gi|225681023|gb|EEH19307.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 2092

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)

Query: 18  LEQTFNHR-NVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP 65
            ++ F     +   FS+EI+P+  ++Y Q NF   +IF D+ ++   D          +P
Sbjct: 142 FKRIFGKTLKIHHLFSAEIDPF-KQSYIQRNFSPDIIFRDVNELIADDATTAFGSLRKVP 200

Query: 66  -DHDVLLAGFPCQPFS 80
            D D+L+ GF C  FS
Sbjct: 201 ADLDLLIVGFSCVDFS 216


>gi|17545588|ref|NP_518990.1| cytosine-specific methyltransferase [Ralstonia solanacearum
          GMI1000]
          Length = 194

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+PY+    +         P  +   DI  ++ +D+  +                 
Sbjct: 4  YYNEIDPYAAAWLRNLIAAGHIAPGDVDERDIQDVRPEDLRGYKQHHFFAGVGVWSLALR 63

Query: 68 -----D---VLLAGFPCQPFSQAG 83
               D   V     PCQPFSQAG
Sbjct: 64 RAGWPDDRLVWTGSCPCQPFSQAG 87


>gi|255074065|ref|XP_002500707.1| hypothetical protein MICPUN_57348 [Micromonas sp. RCC299]
 gi|226515970|gb|ACO61965.1| hypothetical protein MICPUN_57348 [Micromonas sp. RCC299]
          Length = 945

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
          LK+  LF G G +   L Q  +    E    +E +  + +   A F       D
Sbjct: 11 LKVASLFSGCGVLDYGLTQAGH----EIILQTESDDAAREVLAARFQGICQPRD 60


>gi|241889614|ref|ZP_04776912.1| modification methylase HphIA [Gemella haemolysans ATCC 10379]
 gi|241863236|gb|EER67620.1| modification methylase HphIA [Gemella haemolysans ATCC 10379]
          Length = 96

 Score = 45.1 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 52 IFGDIAKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
          I  DI+K+   D+     + DV++ G PCQ FSQ G
Sbjct: 2  INEDISKLDIDDVFNEYKNIDVIVGGPPCQGFSQKG 37


>gi|291439417|ref|ZP_06578807.1| DNA modification methylase M.NGOI [Streptomyces ghanaensis ATCC
          14672]
 gi|291342312|gb|EFE69268.1| DNA modification methylase M.NGOI [Streptomyces ghanaensis ATCC
          14672]
          Length = 338

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDI 64
          D+  G GG+   LE              +  P + +T  AN P   ++  D+     ++ 
Sbjct: 2  DVCAGAGGLASGLESA----GFSPALLLDNKPQACETLLANRPQWNVVCEDLIDFLPEEH 57

Query: 65 P---DHDVLLAGFP 75
          P   D D+L AG P
Sbjct: 58 PEVLDVDLLSAGLP 71


>gi|15600968|ref|NP_232598.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae O1
           biovar eltor str. N16961]
 gi|121586752|ref|ZP_01676535.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|121727743|ref|ZP_01680831.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae V52]
 gi|147671623|ref|YP_001215865.1| putative site-specific DNA-methyltransferase [Vibrio cholerae O395]
 gi|153816788|ref|ZP_01969455.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|153823195|ref|ZP_01975862.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae B33]
 gi|227811822|ref|YP_002811832.1| putative site-specific DNA-methyltransferase [Vibrio cholerae
           M66-2]
 gi|254850603|ref|ZP_05239953.1| cytosine-specific DNA methyltransferase [Vibrio cholerae MO10]
 gi|255745992|ref|ZP_05419939.1| site-specific DNA-methyltransferase putative [Vibrio cholera CIRS
           101]
 gi|262162170|ref|ZP_06031185.1| site-specific DNA-methyltransferase putative [Vibrio cholerae INDRE
           91/1]
 gi|262167363|ref|ZP_06035072.1| site-specific DNA-methyltransferase putative [Vibrio cholerae RC27]
 gi|298500051|ref|ZP_07009857.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657591|gb|AAF96111.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|114326101|gb|ABI64146.1| cytosine-specific DNA methyltransferase [Vibrio cholerae O395]
 gi|121549049|gb|EAX59086.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|121629960|gb|EAX62370.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae V52]
 gi|126512591|gb|EAZ75185.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|126519283|gb|EAZ76506.1| site-specific DNA-methyltransferase, putative [Vibrio cholerae B33]
 gi|146314006|gb|ABQ18546.1| putative site-specific DNA-methyltransferase [Vibrio cholerae O395]
 gi|227010964|gb|ACP07175.1| putative site-specific DNA-methyltransferase [Vibrio cholerae
           M66-2]
 gi|227014870|gb|ACP11079.1| putative site-specific DNA-methyltransferase [Vibrio cholerae O395]
 gi|254846308|gb|EET24722.1| cytosine-specific DNA methyltransferase [Vibrio cholerae MO10]
 gi|255735746|gb|EET91144.1| site-specific DNA-methyltransferase putative [Vibrio cholera CIRS
           101]
 gi|262024247|gb|EEY42939.1| site-specific DNA-methyltransferase putative [Vibrio cholerae RC27]
 gi|262028245|gb|EEY46903.1| site-specific DNA-methyltransferase putative [Vibrio cholerae INDRE
           91/1]
 gi|297542032|gb|EFH78083.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 383

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 25/101 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT--------LIFGD 55
           I   F G G + L  E        +  F +E +   +  Y+ +  +            G 
Sbjct: 19  IFSFFAGSGFLDLGFE----TSGFDVRFVNEFHKPFLDAYKYSREHMGLPKPKYGHYLGS 74

Query: 56  IAKIKTQDIPD--HDVL-----------LAGFPCQPFSQAG 83
           I    T +     +D++           + G PC  FS AG
Sbjct: 75  IDDFVTGEKKQLLYDLVQEAKSEALTGFIGGPPCPDFSVAG 115


>gi|87121096|ref|ZP_01076987.1| modification methylase (Cytosine-specific methyltransferase)
           [Marinomonas sp. MED121]
 gi|86163588|gb|EAQ64862.1| modification methylase (Cytosine-specific methyltransferase)
           [Marinomonas sp. MED121]
          Length = 513

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 56/135 (41%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTY--QANF----------- 47
           + DLF G GG+   +            +   S E  P + +T   +A F           
Sbjct: 8   VIDLFAGPGGLGEGISSYVGDNGLKPFQIGVSVEKEPSAHRTLTTRAFFRKIADNPDSCN 67

Query: 48  ---------------------------------------PNTLIFGDIAKIKTQDIPDHD 68
                                                   N LI   I  + +       
Sbjct: 68  DYYDYVKGHITRDQLFELHPKESQAAIEETLNGPKALGVDNELIHERIRTLTSSH-KGPT 126

Query: 69  VLLAGFPCQPFSQAG 83
           V++ G PCQ +S AG
Sbjct: 127 VVIGGPPCQAYSLAG 141


>gi|194389448|dbj|BAG61690.1| unnamed protein product [Homo sapiens]
          Length = 694

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIAK 58
           ++  LF GI    L L++           +SE+   S+      ++ N        +I K
Sbjct: 480 RVLSLFDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNITK 537

Query: 59  IKTQDIPDHDVLLAGFPCQP 78
              ++    D+++ G PC  
Sbjct: 538 KNIEEWGPFDLVIGGSPCND 557


>gi|187939689|gb|ACD38832.1| DNA methyltransferase family protein [Pseudomonas aeruginosa]
 gi|187939767|gb|ACD38908.1| DNA cytosine methyltransferase [Pseudomonas aeruginosa]
          Length = 696

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          I DLF G GG    LE        +   +   NP ++  ++AN P+T     D+  I   
Sbjct: 28 IVDLFAGGGGASTGLEMG---LGRKVDLAINHNPAAISMHEANHPHTEHLPTDVWGIDPI 84

Query: 63 D 63
          D
Sbjct: 85 D 85


>gi|75906954|ref|YP_321250.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
 gi|75700679|gb|ABA20355.1| C-5 cytosine-specific DNA methylase [Anabaena variabilis ATCC
           29413]
          Length = 385

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 33/107 (30%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPNTLIFG---- 54
           I   F G G + L  E           + +EI    +  Y+      N P T  +G    
Sbjct: 7   IFSFFAGSGLLDLGFE----TSGFNIVYVNEIFSPFMAAYRYSREILNLP-TPQYGYYQG 61

Query: 55  ---DIAKIKTQDIPD---HDVL------------LAGFPCQPFSQAG 83
              D++K+  +  P     D++            + G PC  FS  G
Sbjct: 62  DTADVSKL-VEGFPAKRLLDLVQDCRKSNNIVGFIGGPPCPDFSIGG 107


>gi|21428368|gb|AAM49844.1| GM14972p [Drosophila melanogaster]
          Length = 331

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVL 70
          +           + +   + ++N  +   Y  N+ + L+   +I  +  +++     ++L
Sbjct: 1  MHYAFNYA--QLDGQIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLSVKEVTKLQANML 58

Query: 71 LAGFPCQPFSQAG 83
          L   PCQP ++ G
Sbjct: 59 LMSPPCQPHTRQG 71


>gi|289669548|ref|ZP_06490623.1| DNA-cytosine methyltransferase [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 330

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL-IFGDIAKIKTQDIPD------ 66
          + + ++        +   +++      +T+  NFP    I   I ++ T ++ D      
Sbjct: 1  MDIGIKAA----GFDIKAATDAERLCQETFAENFPGIPFIVRRIGELSTAELLDAAGLAP 56

Query: 67 --HDVLLAGFPCQPFS 80
             D+L+ G PC  FS
Sbjct: 57 GEVDLLVGGPPCPSFS 72


>gi|116062018|dbj|BAF34637.1| chromomethylase [Brassica rapa]
          Length = 805

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
            + DL+CG G +   L        ++    ++ +   Y+V++ + N P T+    +    
Sbjct: 246 TMLDLYCGCGAMSTGLCMGAQLSGLKLVTKWAVDTCEYAVQSIKYNHPETV----VRNES 301

Query: 61  TQDI 64
            +D 
Sbjct: 302 AEDF 305



 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67  HDVLLAGFPCQPFS 80
            DV+  G PCQ  S
Sbjct: 422 VDVVCGGPPCQGIS 435


>gi|212637209|ref|YP_002313734.1| C-5 cytosine-specific DNA methylase [Shewanella piezotolerans WP3]
 gi|212558693|gb|ACJ31147.1| C-5 cytosine-specific DNA methylase [Shewanella piezotolerans WP3]
          Length = 510

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 39/136 (28%), Gaps = 58/136 (42%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT------YQA--------- 45
           + DLF G GG+   +    +           S E  P + KT      Y+          
Sbjct: 8   VIDLFAGPGGLGEGVSSVADGDGNKPFRIGVSVEKEPSAHKTLTTRAFYRKIKVLDGGLE 67

Query: 46  ---NF----------------------------------PNTLIFGDIAK-IKTQDIPDH 67
              N+                                   N LI   I + I T   P  
Sbjct: 68  DYFNYVRGKLTRDEIFELYPQQAQEAIYETLEEPRALGEDNDLIHSRIRELIITHQGPK- 126

Query: 68  DVLLAGFPCQPFSQAG 83
            V++ G PCQ +S AG
Sbjct: 127 -VVIGGPPCQAYSLAG 141


>gi|228950081|ref|ZP_04112266.1| Type II DNA-methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809608|gb|EEM56044.1| Type II DNA-methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 463

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           + +  +  G GGI        + +        E+     +  + NF + ++  D+  I  
Sbjct: 126 ISLLSVCAG-GGI--GTASFVDTQYFTSIAEIELEEDCCEAIRHNFSSFIMNCDVRDINV 182

Query: 62  QDIPDHDVLLAGFPCQPFSQAG 83
             +P  DV+    PC  FS  G
Sbjct: 183 --VPKVDVINCTIPCNNFSTLG 202


>gi|167725800|ref|ZP_02409036.1| putative cytosine-specific modification methylase [Burkholderia
          pseudomallei DM98]
          Length = 661

 Score = 44.7 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    LE+ F         +   +  ++  + AN P+T  + + +  I   
Sbjct: 17 IVDNFAGGGGASTGLERAFGRP---VDVAINHDREALAMHAANHPHTAHYCESVFDIDPV 73

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
          +I       ++     C+ FS+A
Sbjct: 74 EITGNRPVGLVWLSPDCKHFSKA 96


>gi|295105242|emb|CBL02786.1| C-5 cytosine-specific DNA methylase. [Faecalibacterium prausnitzii
           SL3/3]
          Length = 306

 Score = 44.7 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            +  LF GIGG  L  E T+        ++SEI  + +   +  F N             
Sbjct: 233 TLGSLFDGIGGFPLVWETTYGKGTAR--WASEIEEFPIAVTKRRFGND---------SEN 281

Query: 63  DIPDHDVLLAGFPCQ 77
           +     VL  G  CQ
Sbjct: 282 EGNSGTVLCGGN-CQ 295


>gi|308807833|ref|XP_003081227.1| MET-10+related protein-like (ISS) [Ostreococcus tauri]
 gi|116059689|emb|CAL55396.1| MET-10+related protein-like (ISS) [Ostreococcus tauri]
          Length = 1020

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            I DLF GIG   L   Q   +      ++ E NP S +  + N
Sbjct: 476 TIVDLFAGIGYYTL---QLLKNAGAAKVYACEWNPNSCEALRYN 516


>gi|207725408|ref|YP_002255804.1| phage methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206590644|emb|CAQ37606.1| putative phage methyltransferase protein [Ralstonia solanacearum
           MolK2]
          Length = 363

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)

Query: 31  FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
           + +EI+P++    +         P  +   DI  ++  ++                    
Sbjct: 26  YYNEIDPFAAAWLRNLIAAGHIAPGDVDERDIQDVQPDELRGYRQHHFFAGIGVWSLALR 85

Query: 66  ------DHDVLLAGFPCQPFSQAG 83
                 D  V     PCQPFSQAG
Sbjct: 86  RAGWPDDRPVWTGSCPCQPFSQAG 109


>gi|289192747|ref|YP_003458688.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
 gi|288939197|gb|ADC69952.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
          Length = 336

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+F G+G   +  +           ++ +INP++++  + N            I  D+
Sbjct: 199 VVDMFAGVGPFSIACKNAKK------IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|265755712|ref|ZP_06090333.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Bacteroides sp. 3_1_33FAA]
 gi|263234318|gb|EEZ19911.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Bacteroides sp. 3_1_33FAA]
          Length = 296

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+L  GFPCQPFS AG
Sbjct: 4  IDILTGGFPCQPFSVAG 20


>gi|70887603|ref|NP_001020621.1| DNA (cytosine-5)-methyltransferase 3B [Danio rerio]
 gi|62433261|dbj|BAD95478.1| DNA methyltransferase [Danio rerio]
          Length = 816

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           +++  LF GI    L L       ++    +SE+   S+          + +  D+  I 
Sbjct: 538 IRVLSLFDGIATGYLVLRDLGFKVDLYI--ASEVCEDSISVGAVRHEGKIQYVHDVRNIT 595

Query: 61  TQDIPD---HDVLLAGFPCQPFSQ 81
            ++I +    D+++ G PC   S 
Sbjct: 596 RKNIAEWGPFDMVIGGSPCNDLSI 619


>gi|167045163|gb|ABZ09825.1| putative C-5 cytosine-specific DNA methylase [uncultured marine
          microorganism HF4000_APKG8K5]
          Length = 340

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFF----SSEINPYSVKTYQAN-FPNTLIFGDIAK 58
          + DLF G GG+     +  + +  E  F    S E NP + +T Q   F        + +
Sbjct: 10 VIDLFAGPGGLSEGFSRFSSFKGSEVDFRIRLSIEKNPIAKRTLQLRSF--------VRQ 61

Query: 59 IKTQDIPDH 67
              ++P+ 
Sbjct: 62 FPEDELPEV 70


>gi|115313010|gb|AAI24099.1| DNA (cytosine-5-)-methyltransferase 4 [Danio rerio]
          Length = 816

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           +++  LF GI    L L       ++    +SE+   S+          + +  D+  I 
Sbjct: 538 IRVLSLFDGIATGYLVLRDLGFKVDLYI--ASEVCEDSISVGAVRHEGKIQYVHDVRNIT 595

Query: 61  TQDIPD---HDVLLAGFPCQPFSQ 81
            ++I +    D+++ G PC   S 
Sbjct: 596 RKNIAEWGPFDMVIGGSPCNDLSI 619


>gi|15669073|ref|NP_247878.1| hypothetical protein MJ_0883 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024916|sp|Q58293|TRM5B_METJA RecName: Full=tRNA (guanine-N(1)-)-methyltransferase Trm5b;
           AltName: Full=M1G-methyltransferase; AltName: Full=tRNA
           [GM37] methyltransferase
 gi|258588221|pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
 gi|258588222|pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
 gi|1499713|gb|AAB98887.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 336

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+F G+G   +  +           ++ +INP++++  + N            I  D+
Sbjct: 199 VVDMFAGVGPFSIACKNAKK------IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|120599327|ref|YP_963901.1| C-5 cytosine-specific DNA methylase [Shewanella sp. W3-18-1]
 gi|120559420|gb|ABM25347.1| C-5 cytosine-specific DNA methylase [Shewanella sp. W3-18-1]
          Length = 556

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +  ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGMAWALGR-------SVDIAINHDQDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  ++       D+      C+ FS+A
Sbjct: 58 VEPLQATAGKPVDLAWFSPDCKHFSKA 84


>gi|332667836|ref|YP_004450624.1| hypothetical protein Halhy_5928 [Haliscomenobacter hydrossis DSM
          1100]
 gi|332336650|gb|AEE53751.1| hypothetical protein Halhy_5928 [Haliscomenobacter hydrossis DSM
          1100]
          Length = 246

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLFC  GG  +   +       +     + +P      Q N+P      D  +    
Sbjct: 6  RLLDLFCKQGGCSMGYHRA----GFDVVG-VDKDP------QPNYPFEFHQADALEYLAT 54

Query: 63 DIPDHDVLLAGFPCQPFSQ 81
               D++ A  PCQ +S+
Sbjct: 55 HGHLFDIIHASPPCQGYSR 73


>gi|330797774|ref|XP_003286933.1| hypothetical protein DICPUDRAFT_150953 [Dictyostelium purpureum]
 gi|325083099|gb|EGC36561.1| hypothetical protein DICPUDRAFT_150953 [Dictyostelium purpureum]
          Length = 58

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44
          L++ + + GIGG+   L+++      E   S +IN  ++  Y+
Sbjct: 18 LRVLEFYSGIGGMHYGLKESGVK--FEVVQSFDINTNAILNYK 58


>gi|159474758|ref|XP_001695492.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
 gi|158275975|gb|EDP01750.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
            reinhardtii]
          Length = 1663

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 6    DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
            D+F G GG+ L L Q+      +  ++ E +  +   ++AN P   + 
Sbjct: 1094 DIFAGAGGLSLGLHQSGVA---DTRYAVEFDTAAAAAFRANHPGVAVH 1138



 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 67   HDVLLAGFPCQPFS 80
             D+L+ G PCQ FS
Sbjct: 1204 VDLLVGGPPCQGFS 1217


>gi|256811407|ref|YP_003128776.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794607|gb|ACV25276.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 336

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+F G+G   +  +           ++ +INP++++  + N            I  D+
Sbjct: 199 VVDMFAGVGPFSIACKNAKK------IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|13476615|ref|NP_108185.1| DNA modification methylase [Mesorhizobium loti MAFF303099]
 gi|14027377|dbj|BAB53646.1| mlr7992 [Mesorhizobium loti MAFF303099]
          Length = 390

 Score = 44.4 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 18/91 (19%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----------FPNTLIF 53
          I  L  G  G+ L +E              E   ++V    A+           P   I+
Sbjct: 10 ILSLCTGGAGLDLGVELAIPSA--RTVCMVEREAFAV----AHLVSAMEQGLLHP-APIW 62

Query: 54 GDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           D      +      D L+ G PCQP S AG
Sbjct: 63 SDARTFDGRAWRGCVDGLVGGIPCQPHSLAG 93


>gi|18977787|ref|NP_579144.1| met-10+ protein [Pyrococcus furiosus DSM 3638]
 gi|18893532|gb|AAL81539.1| met-10+ protein [Pyrococcus furiosus DSM 3638]
          Length = 333

 Score = 44.4 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDIA 57
           + D+F G+G   + L +       +  F+ +INP+++K  + N      F    I GD+ 
Sbjct: 187 VFDMFAGVGPYSILLSR-----KAKLVFACDINPWAIKYLEENIRLNKSFNVIPILGDVR 241

Query: 58  KIK 60
           K+ 
Sbjct: 242 KVS 244


>gi|163716644|gb|ABY40554.1| putative site-specific DNA methylase [Burkholderia phage Bups
          phi1]
          Length = 334

 Score = 44.4 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    LE+ F         +   +  ++  + AN P+T  + + +  I   
Sbjct: 17 IVDNFAGGGGASTGLERAFGRP---VDVAINHDREALAMHAANHPHTAHYCESVFDIDPV 73

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
          +I       ++     C+ FS+A
Sbjct: 74 EITGNRPVGLVWLSPDCKHFSKA 96


>gi|26553946|ref|NP_757880.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
 gi|26453954|dbj|BAC44284.1| cytosine-specific DNA methyltransferase [Mycoplasma penetrans HF-2]
          Length = 395

 Score = 44.4 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 35  INPYSVKTY----QANFPNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           IN     +Y    + +F N     DI K+   + P   D+    FPCQ  S  G
Sbjct: 92  INNTIKASYLNYAKKHFNNLF---DIKKVNKDNFPKNIDIFTYSFPCQDLSVQG 142


>gi|13541905|ref|NP_111593.1| methyltransferase [Thermoplasma volcanium GSS1]
 gi|14325337|dbj|BAB60241.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 334

 Score = 44.4 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFG 54
           + + D+F GIG   L   +  +  + +   + +INP ++K  + N            I G
Sbjct: 182 MTVLDMFAGIGYFTLPAVKYGHAEHTD---ACDINPEAIKFLKKNLSANGISKSVKPICG 238

Query: 55  DIAKIKTQDIPDHDVLLAG 73
           D        I  +D+++ G
Sbjct: 239 DAR--IACPIKAYDLIIMG 255


>gi|194224302|ref|XP_001916549.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 3 beta [Equus
           caballus]
          Length = 774

 Score = 44.4 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT--YQANFPNTLIF----GD 55
           +++  LF GI    L L++           +SE+   S+     +     +        D
Sbjct: 558 IRVLSLFDGIATGYLVLKELGIKVKY---VASEVCEESIAVGSLKHERQLSKXCXMTSRD 614

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFS 80
           I K   ++    D+++ G PC   S
Sbjct: 615 ITKRNIEEWGPFDLVIGGSPCNDLS 639


>gi|241758593|ref|ZP_04756708.1| site-specific DNA-methyltransferase [Neisseria flavescens SK114]
 gi|241321245|gb|EER57417.1| site-specific DNA-methyltransferase [Neisseria flavescens SK114]
          Length = 364

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 26/102 (25%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-------------NFPNT 50
          I   F G G + L  E +      E  F +E++P  ++ Y+               F  +
Sbjct: 2  IFSFFSGSGFLDLGFELS----GFEIAFVNEVHPPFLEAYKYSRSKMGIPKPKYGYFEGS 57

Query: 51 LIF-------GDIAKIKTQDIPDHDVL--LAGFPCQPFSQAG 83
          +          D++    ++  D  ++  + G PC  FS AG
Sbjct: 58 IDECLDMEKARDLSSWVKKEKQDGVIVGFIGGPPCPDFSVAG 99


>gi|261403494|ref|YP_003247718.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370487|gb|ACX73236.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 336

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+F G+G   +              ++ +INP++++  + N            I  D+
Sbjct: 199 VVDMFAGVGPFSIACRNAKK------IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|242211531|ref|XP_002471603.1| predicted protein [Postia placenta Mad-698-R]
 gi|220729279|gb|EED83156.1| predicted protein [Postia placenta Mad-698-R]
          Length = 2531

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 22  FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVL 70
             +   E  FS EI P+     + NF   L+F D+ ++              +P D D+L
Sbjct: 164 GVNMEFEHVFSCEIEPFKQAYIERNFKPPLLFRDVCELGDSHATTAYGSLAPVPGDVDIL 223

Query: 71  LAGFPCQPFS 80
           +AG  C  +S
Sbjct: 224 IAGTSCVDYS 233


>gi|85710862|ref|ZP_01041923.1| modification methylase (Cytosine-specific methyltransferase)
           [Idiomarina baltica OS145]
 gi|85695266|gb|EAQ33203.1| modification methylase (Cytosine-specific methyltransferase)
           [Idiomarina baltica OS145]
          Length = 515

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 38/135 (28%), Gaps = 55/135 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT------YQ---------- 44
           + DLF G GG+   +    +           S E  P + KT      Y+          
Sbjct: 8   VIDLFAGPGGLGEGISSVADVDGSYPFRIGVSVEKEPSAHKTLTTRAFYRKIKNSELGLA 67

Query: 45  ----------------ANFP------------NTLIFGDIAKIKTQDIPDH-----D--- 68
                           A FP                 GD  K     I +      D   
Sbjct: 68  YYNDYLMGAYTREELFAYFPIEAEESLRETLYTPHALGDDNKEIHSRISELVKAHGDKPR 127

Query: 69  VLLAGFPCQPFSQAG 83
           V++ G PCQ +S AG
Sbjct: 128 VVIGGPPCQAYSLAG 142


>gi|282859818|ref|ZP_06268912.1| Eco57I restriction endonuclease [Prevotella bivia JCVIHMP010]
 gi|282587438|gb|EFB92649.1| Eco57I restriction endonuclease [Prevotella bivia JCVIHMP010]
          Length = 851

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 26/100 (26%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN----FPNTLIFGDI 56
               LF   G+G         F   N  C  + E+    +K  + N    + +  I GD+
Sbjct: 27  TYVSLFSSAGVGC------YGFKQENFYCIATVELLERRLKIQKYNQKCAYDSGYICGDM 80

Query: 57  AKIKTQ--------------DIPDHDVLLAGFPCQPFSQA 82
            + +TQ              ++ D DV++A  PCQ  S A
Sbjct: 81  TQKETQGRVFEELDLWKRNFNVKDLDVIIATPPCQGMSVA 120


>gi|224503828|ref|ZP_03672135.1| hypothetical protein LmonFR_15252 [Listeria monocytogenes FSL
          R2-561]
 gi|255030128|ref|ZP_05302079.1| hypothetical protein LmonL_15486 [Listeria monocytogenes LO28]
          Length = 33

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE 28
          +   DLF GIGG RL +E+    R  E
Sbjct: 1  MNFLDLFAGIGGFRLGMERNAELRRGE 27


>gi|296416157|ref|XP_002837747.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633630|emb|CAZ81938.1| unnamed protein product [Tuber melanosporum]
          Length = 2127

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ--------DIP---DH 67
            Q     ++E  FS EI  Y     + NF   ++F D+ ++            +P   + 
Sbjct: 207 SQGIGKLDIEHVFSCEIELYKQAYIERNFKPPILFRDVRELGEDVATTAYGAKVPVPGNV 266

Query: 68  DVLLAGFPCQPFS 80
           D+L+AG  C  FS
Sbjct: 267 DLLIAGTSCVDFS 279


>gi|222107089|ref|YP_002547880.1| DNA-cytosine methyltransferase [Agrobacterium vitis S4]
 gi|221738268|gb|ACM39164.1| DNA-cytosine methyltransferase [Agrobacterium vitis S4]
          Length = 390

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA------NFPNTLIFGDI 56
           I  L  G GG+ L +E              E   ++     +        P   ++ D 
Sbjct: 11 NIISLCTGGGGLDLAVELAVPSA--RTVCMVEREGFACGALVSAMEAGLMAP-APVWSDA 67

Query: 57 AKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
               +      D L+ G PCQP S AG
Sbjct: 68 RTFNGRPWRGLVDGLIGGIPCQPHSLAG 95


>gi|126342952|ref|XP_001374866.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 475

 Score = 44.0 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + DL+ GIG   L       H N     + E +P++    + N           +  GD 
Sbjct: 261 LVDLYAGIGYFTLPF---LIHANAAFVHACEWDPHAATALKKNLELNSVADRCCIHLGDN 317

Query: 57  AKIKTQDIPD 66
            K+K + I D
Sbjct: 318 RKLKLRSIAD 327


>gi|296087643|emb|CBI34899.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAK 58
           + +  LF GIGG  + L +      ++   + EI+  +    ++ +  T   G   DIA 
Sbjct: 414 ITLLSLFSGIGGAEIALHRLG--IPLKNVVAVEISETNRNILRSWWEQTNQRGTLVDIAD 471

Query: 59  IK----------TQDIPDHDVLLAGFP 75
           ++                 D+++   P
Sbjct: 472 VQQLNGDRLEQLIHTFGGFDLIVVTSP 498


>gi|126667824|ref|ZP_01738791.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
 gi|126627772|gb|EAZ98402.1| C-5 cytosine-specific DNA methylase [Marinobacter sp. ELB17]
          Length = 327

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEIN-PYSVKTYQANFPNTLIFGD-IA 57
           L +   F G G +   L   F    ++     + EI   Y   + +AN P        I 
Sbjct: 53  LNVVSAFSGAGVMDRALHDGFQSAGIKLRTMLTIEIEGKYVDASLKAN-PELFDRNSVIV 111

Query: 58  KIKTQD-----IPDHDVLLAGFPCQPFSQAG 83
               QD         DV  AG PC   S AG
Sbjct: 112 NTPIQDTCITGTAYSDVFWAGIPCLGSSLAG 142


>gi|15828656|ref|NP_326016.1| CpG DNA methylase (cytosine-specific methyltransferase SSSI)
          [Mycoplasma pulmonis UAB CTIP]
 gi|14089598|emb|CAC13358.1| CPG DNA METHYLASE (CYTOSINE-SPECIFIC METHYLTRANSFERASE SSSI)
          [Mycoplasma pulmonis]
          Length = 82

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 2  LKITDLFCGIGGIRLDLEQTFN---HRNVECFFSSEINPYSVKTYQANFPNT 50
          L + + F GIG  R  LE   N   +   +   +SE + Y+  +Y     NT
Sbjct: 15 LNVFETFAGIGAQRRALENVKNKNPNFEYKIVATSEWDMYANISYDLIHHNT 66


>gi|312213040|emb|CBX93122.1| hypothetical protein [Leptosphaeria maculans]
          Length = 757

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
             I D+FCG GG      Q   H      +  +++  +++ Y+ N P    F        
Sbjct: 329 YTIGDVFCGFGGASQGAAQAGLH----VAWGLDVDQQALRAYKMNHPGASGF----LCNA 380

Query: 62  QDIPD---------HDVLLAGFPCQPFSQA 82
            D P            VL    PC  FS A
Sbjct: 381 HDFPPPGKTKEELRVHVLHLSPPCCFFSPA 410


>gi|309267827|ref|XP_001004878.2| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Mus
           musculus]
          Length = 763

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        DI  I 
Sbjct: 485 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVDDIRNIT 542

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            + I +    D+++ G PC   S
Sbjct: 543 KEHIDEWGPFDLVIGGSPCNDLS 565


>gi|308183510|ref|YP_003927637.1| hypothetical protein HPPC_06895 [Helicobacter pylori PeCan4]
 gi|308065695|gb|ADO07587.1| hypothetical protein HPPC_06895 [Helicobacter pylori PeCan4]
          Length = 48

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSV 40
            IT LF G GG+ L     FN  N        +  ++++++  +V
Sbjct: 3  FTITSLFSGCGGLDLGFCGGFNFLNRHYAKNPFKIIYANDLDKNAV 48


>gi|254252470|ref|ZP_04945788.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
 gi|124895079|gb|EAY68959.1| Site-specific DNA methylase [Burkholderia dolosa AUO158]
          Length = 669

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    LE+ F           +I    +P ++  + AN P T  + + +  
Sbjct: 17 IVDNFAGGGGASTGLERAFGRP-------VDIAINHDPEALAMHAANHPRTKHYCESVFD 69

Query: 59 IKTQDIP---DHDVLLAGFPCQPFSQA 82
          +   +I       ++     C+ FS+A
Sbjct: 70 VDPIEITGNQPVGLVWLSPDCKHFSKA 96


>gi|167764508|ref|ZP_02436629.1| hypothetical protein BACSTE_02897 [Bacteroides stercoris ATCC
           43183]
 gi|167697177|gb|EDS13756.1| hypothetical protein BACSTE_02897 [Bacteroides stercoris ATCC
           43183]
          Length = 856

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 26/100 (26%)

Query: 3   KITDLF--CGIGGIRLDLEQTFNHRNVECFFSSEINPY--SVKTYQAN--FPNTLIFGDI 56
               LF   G+G         F      C  + E+      +++Y     + +  I GD+
Sbjct: 29  TYISLFSSAGVGC------YGFKEEGFYCIATVELLERRLKIQSYNHKCAYKSGYICGDM 82

Query: 57  AKIKTQD--------------IPDHDVLLAGFPCQPFSQA 82
              +T+D              + D DVL+A  PCQ  S A
Sbjct: 83  TLQETKDKVFNELTLWKSALNVTDLDVLIATPPCQGMSVA 122


>gi|190338655|gb|AAI62582.1| Dnmt6 protein [Danio rerio]
          Length = 728

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
           +++  LF GI    L L +      VE + +SE+   S+          +++ GD+ ++ 
Sbjct: 451 IRVLSLFDGIATGLLVLRELG--IQVERYVASEVCEDSITVGIVRHQGRIMYVGDVRQLT 508

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQ 81
               Q+    D+++ G PC   S 
Sbjct: 509 RKNIQEWGPFDLVIGGSPCNDLSI 532


>gi|66392184|ref|NP_001018150.1| DNA (cytosine-5)-methyltransferase 3A [Danio rerio]
 gi|62433265|dbj|BAD95480.1| DNA methyltransferase [Danio rerio]
          Length = 731

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKI- 59
           +++  LF GI    L L +      VE + +SE+   S+          +++ GD+ ++ 
Sbjct: 451 IRVLSLFDGIATGLLVLRELG--IQVERYVASEVCEDSITVGIVRHQGRIMYVGDVRQLT 508

Query: 60  --KTQDIPDHDVLLAGFPCQPFSQ 81
               Q+    D+++ G PC   S 
Sbjct: 509 RKNIQEWGPFDLVIGGSPCNDLSI 532


>gi|219117139|ref|XP_002179364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409255|gb|EEC49187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 947

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPD----HDVLLA 72
           +E  FS EI P+     + NF   L+F DI ++            +D+P+     DVL+A
Sbjct: 407 IEHVFSCEIEPFKQAYIERNFRPPLLFRDIRELGQPQAYTAYGALRDVPNRPGCVDVLVA 466

Query: 73  GFPCQPFS 80
           G  C  +S
Sbjct: 467 GTSCVDYS 474


>gi|170739771|ref|YP_001768426.1| DNA-cytosine methyltransferase [Methylobacterium sp. 4-46]
 gi|168194045|gb|ACA15992.1| DNA-cytosine methyltransferase [Methylobacterium sp. 4-46]
          Length = 434

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 25/79 (31%)

Query: 27 VECFFSSEINPYSVKTYQAN----------FPNTLIFGDIAKIKTQDI------------ 64
              FS E +P +  TY+ N          +P+ L        + +++            
Sbjct: 24 FSILFSVEAHPDAFATYRHNLLDARPDQHVWPSWLEK---RAWRAEELFTTHRAELVGLR 80

Query: 65 PDHDVLLAGFPCQPFSQAG 83
             D+L  G PCQ FS  G
Sbjct: 81 GKVDLLAGGPPCQGFSTNG 99


>gi|309264629|ref|XP_003086323.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Mus
           musculus]
          Length = 740

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        DI  I 
Sbjct: 462 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVDDIRNIT 519

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            + I +    D+++ G PC   S
Sbjct: 520 KEHIDEWGPFDLVIGGSPCNDLS 542


>gi|149030966|gb|EDL85993.1| rCG37517, isoform CRA_b [Rattus norvegicus]
          Length = 839

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQANFPNTLIFGDIAKI 59
           +++  LF GI    L L+       VE + +SE+     +V T +          D+ KI
Sbjct: 561 IRVLSLFDGIATGYLVLKDLGIK--VEKYVASEVCAESIAVGTIKHE-GQIKYVNDVRKI 617

Query: 60  KTQDIPD---HDVLLAGFPCQPFS 80
             ++I +    D+++ G PC   S
Sbjct: 618 TKKNIEEWGPFDLVIGGSPCNDLS 641


>gi|149030967|gb|EDL85994.1| rCG37517, isoform CRA_c [Rattus norvegicus]
          Length = 796

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQANFPNTLIFGDIAKI 59
           +++  LF GI    L L+       VE + +SE+     +V T +          D+ KI
Sbjct: 581 IRVLSLFDGIATGYLVLKDLGIK--VEKYVASEVCAESIAVGTIKHE-GQIKYVNDVRKI 637

Query: 60  KTQDIPD---HDVLLAGFPCQPFS 80
             ++I +    D+++ G PC   S
Sbjct: 638 TKKNIEEWGPFDLVIGGSPCNDLS 661


>gi|51556273|ref|NP_001003959.1| DNA (cytosine-5)-methyltransferase 3B [Rattus norvegicus]
 gi|50539393|tpe|CAE52319.1| TPA: putative DNA (cytosine-5) methyltransferase 3b [Rattus
           norvegicus]
 gi|149030965|gb|EDL85992.1| rCG37517, isoform CRA_a [Rattus norvegicus]
          Length = 859

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQANFPNTLIFGDIAKI 59
           +++  LF GI    L L+       VE + +SE+     +V T +          D+ KI
Sbjct: 581 IRVLSLFDGIATGYLVLKDLGIK--VEKYVASEVCAESIAVGTIKHE-GQIKYVNDVRKI 637

Query: 60  KTQDIPD---HDVLLAGFPCQPFS 80
             ++I +    D+++ G PC   S
Sbjct: 638 TKKNIEEWGPFDLVIGGSPCNDLS 661


>gi|290956749|ref|YP_003487931.1| modification methylase [Streptomyces scabiei 87.22]
 gi|260646275|emb|CBG69370.1| putative modification methylase [Streptomyces scabiei 87.22]
          Length = 400

 Score = 44.0 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 34 EINPYSVKTYQANFPNTLIFGDIAKIKTQDI-PDHDVLLAGFPCQPFSQAG 83
          E + ++ KT +A      I  D+A    +      D L+A  PCQ +S AG
Sbjct: 4  EWDEWACKT-RAAAGQLTIRTDVALYPVRPFLGRTDGLIASPPCQAWSMAG 53


>gi|254467075|ref|ZP_05080486.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206687983|gb|EDZ48465.1| DNA-cytosine methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 497

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 50/130 (38%)

Query: 4   ITDLFCGIGGIRLDLEQTFN--HRNVECFFSSE-----------------INPYSVKTYQ 44
           I DLF G GG+     Q        ++   S E                  +    + Y 
Sbjct: 7   IIDLFAGPGGLGEGFSQAGRVVDAQMKIHLSVEMDHHAIQTLRLRAFLRSFDEIPQEYYD 66

Query: 45  A-N----FPN---------TLIFGDIAK-------------IKTQDIPDHD----VLLAG 73
           A N    FP+          L   ++ +             ++     +      +L+ G
Sbjct: 67  ALNRGEQFPDWSELYPSNWRLAEREVRQRVLGAQGVFDELAVELDHAREAHNGNTILIGG 126

Query: 74  FPCQPFSQAG 83
            PCQ +S AG
Sbjct: 127 PPCQAYSLAG 136


>gi|119512988|ref|ZP_01632048.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
 gi|119462362|gb|EAW43339.1| C-5 cytosine-specific DNA methylase [Nodularia spumigena CCY9414]
          Length = 424

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPY-------SVKTYQANFPN---TLIFGDI 56
           LF G GG+   + Q      +    + E +P          +T+  NF      +I   +
Sbjct: 99  LFSGGGGVEAGMLQA----GIRPAIAVEYDPTKPKLSRAISQTHHCNFSEYRCKVIQQTV 154

Query: 57  AKIKT---QDIPDHDVLLAGFPCQPFSQA 82
            ++     Q  P  D L A   C  FSQA
Sbjct: 155 QEVAASGFQGFPQPDYLHASPVCANFSQA 183


>gi|149030968|gb|EDL85995.1| rCG37517, isoform CRA_d [Rattus norvegicus]
          Length = 776

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQANFPNTLIFGDIAKI 59
           +++  LF GI    L L+       VE + +SE+     +V T +          D+ KI
Sbjct: 561 IRVLSLFDGIATGYLVLKDLGIK--VEKYVASEVCAESIAVGTIKHE-GQIKYVNDVRKI 617

Query: 60  KTQDIPD---HDVLLAGFPCQPFS 80
             ++I +    D+++ G PC   S
Sbjct: 618 TKKNIEEWGPFDLVIGGSPCNDLS 641


>gi|294056254|ref|YP_003549912.1| DNA-cytosine methyltransferase [Coraliomargarita akajimensis DSM
           45221]
 gi|293615587|gb|ADE55742.1| DNA-cytosine methyltransferase [Coraliomargarita akajimensis DSM
           45221]
          Length = 518

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 36/133 (27%), Gaps = 58/133 (43%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ------------AN-----F 47
            D+F G GG+             +   S E++ ++  T +             N     F
Sbjct: 9   IDIFAGPGGLAEGFSNA----GFDIRLSVEMDEHAHNTLRFRSFCRKLRKAGKNNELIEF 64

Query: 48  ---PNTLIFGDIAKIKTQDI----------------------------------PDHDVL 70
              P +    D  K+  + +                                  P   VL
Sbjct: 65  YSKPESDNTFDQTKLTAKHVRLWKHAEKEAMQATLGETPAKEVSDRIEAALGKEPKDWVL 124

Query: 71  LAGFPCQPFSQAG 83
           L G PCQ +S  G
Sbjct: 125 LGGPPCQAYSLVG 137


>gi|126303513|ref|XP_001380132.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           [Monodelphis domestica]
          Length = 913

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 635 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRN 690

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 691 VTQKHIQEWGPFDLVIGGSPCNDLSI 716


>gi|67514593|ref|NP_001020003.1| DNA (cytosine-5)-methyltransferase 3A [Gallus gallus]
 gi|82227308|sp|Q4W5Z4|DNM3A_CHICK RecName: Full=DNA (cytosine-5)-methyltransferase 3A; Short=Dnmt3a
 gi|66766324|dbj|BAD99023.1| DNA methyltransferase 3A [Gallus gallus]
          Length = 877

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 599 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRN 654

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 655 VTQKHIQEWGPFDLVIGGSPCNDLSI 680


>gi|221125682|ref|XP_002166528.1| PREDICTED: similar to tRNA methyltransferase 12 homolog [Hydra
           magnipapillata]
          Length = 350

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 4   ITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L  L +   H      ++ E NP ++   + N
Sbjct: 164 VVDLFAGIGYFTLPYLVKARAH----TVYACEWNPNAIIALKRN 203


>gi|170086666|ref|XP_001874556.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649756|gb|EDR13997.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1926

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DH 67
           +Q   + ++E  FS EI P+     + NF   L+F D+ ++   +          +P D 
Sbjct: 88  KQHGVNFDIEHVFSCEIEPFKQAYIERNFQPPLLFRDVCELGDGEAHTAYGALAPVPGDV 147

Query: 68  DVLLAGFPCQPFS 80
           D+L+AG  C  +S
Sbjct: 148 DILIAGTSCVDYS 160


>gi|325093103|gb|EGC46413.1| SNF2 family helicase [Ajellomyces capsulatus H88]
          Length = 2239

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 18  LEQTFNHR-NVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP 65
            ++ F  + N+   FS+EI+P+  ++Y Q NF   +IF D+ ++   +          +P
Sbjct: 203 FKKIFGQKFNMRHLFSAEIDPF-KQSYIQRNFSPDIIFRDVNELIADEAVTAFGSLRKVP 261

Query: 66  D-HDVLLAGFPCQPFS 80
              D+L+ GF C  FS
Sbjct: 262 STLDLLVVGFSCVDFS 277


>gi|299771250|ref|YP_003733276.1| putative C-5 cytosine-specific DNA methylase [Acinetobacter sp.
          DR1]
 gi|298701338|gb|ADI91903.1| putative C-5 cytosine-specific DNA methylase [Acinetobacter sp.
          DR1]
          Length = 553

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          I D F G GG    LE   N         +   P ++  ++AN P+   +  D+  +   
Sbjct: 24 IVDFFAGGGGASTGLEMGLNRPVHVAVNHN---PKAISMHEANHPHAKHYVQDVFVVDPV 80

Query: 63 DIPD 66
          +I D
Sbjct: 81 EICD 84


>gi|240275730|gb|EER39243.1| DNA repair protein RAD8 [Ajellomyces capsulatus H143]
          Length = 1838

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 18  LEQTFNHR-NVECFFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP 65
            ++ F  + N+   FS+EI+P+  ++Y Q NF   +IF D+ ++   +          +P
Sbjct: 142 FKKIFGQKFNMRHLFSAEIDPF-KQSYIQRNFSPDIIFRDVNELIADEAVTAFGSLRKVP 200

Query: 66  D-HDVLLAGFPCQPFS 80
              D+L+ GF C  FS
Sbjct: 201 STLDLLVVGFSCVDFS 216


>gi|149633079|ref|XP_001509081.1| PREDICTED: similar to DNA methyltransferase 3A [Ornithorhynchus
           anatinus]
          Length = 815

 Score = 44.0 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 537 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRN 592

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 593 VTQKHIQEWGPFDLVIGGSPCNDLSI 618


>gi|240141810|ref|YP_002966318.1| hypothetical protein MexAM1_META2p0039 [Methylobacterium
          extorquens AM1]
 gi|240011752|gb|ACS42977.1| Hypothetical protein MexAM1_META2p0039 [Methylobacterium
          extorquens AM1]
          Length = 250

 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 28/82 (34%)

Query: 4  ITDLFCGIGGIRLDLEQTFNH--RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          +  LF GIG +    E+      R  +  +                      GD+     
Sbjct: 8  VLSLFPGIGLLDQAFEEAGFCMVRGPDLLWG---------------------GDVRSFHP 46

Query: 62 QDIP--DHDVLLAGFPCQPFSQ 81
             P    D ++ G PCQ FS+
Sbjct: 47 ---PCGRFDGIVGGPPCQAFSR 65


>gi|6110464|gb|AAF03835.1|AF185647_1 DNA (5-cytosine) methyltransferase homolog [Drosophila
          melanogaster]
          Length = 345

 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVLLAGF 74
           E      + +   + ++N  +   Y  N+ + L+   +I  +  +++     ++LL   
Sbjct: 19 FEDA--QLDGQIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLSVKEVTKLQANMLLMSP 76

Query: 75 PCQPFSQAG 83
          PCQP ++ G
Sbjct: 77 PCQPHTRQG 85


>gi|17137742|ref|NP_477475.1| methyltransferase 2, isoform A [Drosophila melanogaster]
 gi|7297918|gb|AAF53163.1| methyltransferase 2, isoform A [Drosophila melanogaster]
          Length = 345

 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPD--HDVLLAGF 74
           E      + +   + ++N  +   Y  N+ + L+   +I  +  +++     ++LL   
Sbjct: 19 FEDA--QLDGQIVAALDVNTVANAVYAHNYGSNLVKTRNIQSLSVKEVTKLQANMLLMSP 76

Query: 75 PCQPFSQAG 83
          PCQP ++ G
Sbjct: 77 PCQPHTRQG 85


>gi|312214270|emb|CBX94263.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1340

 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN---TLIFGDI-- 56
           LK   +F G G +   +E+           + + +P+++ T +AN  N    L  G +  
Sbjct: 643 LKGLSIFSGGGSLDRGIEEGGGVEFHT---AVDFSPHAIHTQRANARNPKICLYCGSVDD 699

Query: 57  --------AKIK-TQDIPDHDVLLAGFPCQPFS 80
                           I   + L AG PC  FS
Sbjct: 700 YLKAALKGTNRDLIAGIGKVEFLCAGSPCPGFS 732


>gi|126322017|ref|XP_001372768.1| PREDICTED: similar to epithelial calcium channel [Monodelphis
           domestica]
          Length = 442

 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H N     + E +P++    + N           +  GD 
Sbjct: 229 LVDLYAGIGYFTLPF---LIHANAAFVHACEWDPHAAAALKKNLELNGVSDRCSIHLGDN 285

Query: 57  AKIKTQDI 64
            K+K + I
Sbjct: 286 RKLKLRSI 293


>gi|308803538|ref|XP_003079082.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
           superfamily (ISS) [Ostreococcus tauri]
 gi|116057536|emb|CAL51963.1| Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box
           superfamily (ISS) [Ostreococcus tauri]
          Length = 2061

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQP 78
            FS EI P+     + NF   ++F DI ++   +          +P D D+L+AG  C  
Sbjct: 59  VFSCEIEPFKQAYIERNFAPPILFRDIRELGGDEATTAYGAKVRVPHDVDMLVAGTSCVD 118

Query: 79  FS 80
           +S
Sbjct: 119 YS 120


>gi|172088105|ref|NP_001003963.2| DNA (cytosine-5)-methyltransferase 3B isoform 4 [Mus musculus]
 gi|21655121|gb|AAL85481.1| DNA cytosine methyltransferase 3b6 [Mus musculus]
 gi|123234594|emb|CAM27221.1| DNA methyltransferase 3B [Mus musculus]
 gi|148674087|gb|EDL06034.1| mCG10465, isoform CRA_c [Mus musculus]
 gi|148674092|gb|EDL06039.1| mCG10465, isoform CRA_c [Mus musculus]
          Length = 796

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 638

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 639 KKNIEEWGPFDLVIGGSPCNDLS 661


>gi|172088101|ref|NP_001003960.2| DNA (cytosine-5)-methyltransferase 3B isoform 2 [Mus musculus]
 gi|6449472|gb|AAC40179.2| DNA cytosine-5 methyltransferase 3B2 [Mus musculus]
 gi|123234598|emb|CAM27225.1| DNA methyltransferase 3B [Mus musculus]
 gi|148674090|gb|EDL06037.1| mCG10465, isoform CRA_d [Mus musculus]
 gi|148674091|gb|EDL06038.1| mCG10465, isoform CRA_d [Mus musculus]
          Length = 839

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 561 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 618

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 619 KKNIEEWGPFDLVIGGSPCNDLS 641


>gi|172088103|ref|NP_034198.3| DNA (cytosine-5)-methyltransferase 3B isoform 3 [Mus musculus]
 gi|6449474|gb|AAC40180.2| DNA cytosine-5 methyltransferase 3B3 [Mus musculus]
 gi|123234596|emb|CAM27223.1| DNA methyltransferase 3B [Mus musculus]
 gi|148674085|gb|EDL06032.1| mCG10465, isoform CRA_a [Mus musculus]
 gi|148674088|gb|EDL06035.1| mCG10465, isoform CRA_a [Mus musculus]
          Length = 776

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 561 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 618

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 619 KKNIEEWGPFDLVIGGSPCNDLS 641


>gi|8347126|gb|AAF74518.1|AF151972_1 DNA cytosine-specific methyltransferase isoform 4 [Mus musculus]
 gi|8347135|gb|AAF74521.1|AF151975_1 DNA cytosine-specific methyltransferase isoform 7 [Mus musculus]
          Length = 796

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 638

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 639 KKNIEEWGPFDLVIGGSPCNDLS 661


>gi|8347120|gb|AAF74516.1|AF151970_1 DNA cytosine-specific methyltransferase isoform 2 [Mus musculus]
 gi|8347131|gb|AAF74520.1|AF151974_1 DNA cytosine-specific methyltransferase isoform 6 [Mus musculus]
          Length = 839

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 561 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 618

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 619 KKNIEEWGPFDLVIGGSPCNDLS 641


>gi|8347118|gb|AAF74515.1|AF151969_1 DNA cytosine-specific methyltransferase isoform 1 [Mus musculus]
 gi|8347128|gb|AAF74519.1|AF151973_1 DNA cytosine-specific methyltransferase isoform 5 [Mus musculus]
          Length = 859

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 638

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 639 KKNIEEWGPFDLVIGGSPCNDLS 661


>gi|8347123|gb|AAF74517.1|AF151971_1 DNA cytosine-specific methyltransferase isoform 3 [Mus musculus]
 gi|8347137|gb|AAF74522.1|AF151976_1 DNA cytosine-specific methyltransferase isoform 8 [Mus musculus]
          Length = 776

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 561 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 618

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 619 KKNIEEWGPFDLVIGGSPCNDLS 641


>gi|172088108|ref|NP_001116469.1| DNA (cytosine-5)-methyltransferase 3B isoform 5 [Mus musculus]
 gi|76780249|gb|AAI05923.1| DNA methyltransferase 3B [Mus musculus]
 gi|111493961|gb|AAI05678.1| DNA methyltransferase 3B [Mus musculus]
 gi|123234595|emb|CAM27222.1| DNA methyltransferase 3B [Mus musculus]
          Length = 860

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 582 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 639

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 640 KKNIEEWGPFDLVIGGSPCNDLS 662


>gi|172088099|ref|NP_001003961.2| DNA (cytosine-5)-methyltransferase 3B isoform 1 [Mus musculus]
 gi|17374904|sp|O88509|DNM3B_MOUSE RecName: Full=DNA (cytosine-5)-methyltransferase 3B; Short=Dnmt3b;
           AltName: Full=DNA methyltransferase MmuIIIB; Short=DNA
           MTase MmuIIIB; Short=M.MmuIIIB
 gi|6449470|gb|AAC40178.2| DNA cytosine-5 methyltransferase 3B1 [Mus musculus]
 gi|123234597|emb|CAM27224.1| DNA methyltransferase 3B [Mus musculus]
 gi|148674086|gb|EDL06033.1| mCG10465, isoform CRA_b [Mus musculus]
 gi|148674089|gb|EDL06036.1| mCG10465, isoform CRA_b [Mus musculus]
          Length = 859

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        D+ KI 
Sbjct: 581 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVNDVRKIT 638

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            ++I +    D+++ G PC   S
Sbjct: 639 KKNIEEWGPFDLVIGGSPCNDLS 661


>gi|148674093|gb|EDL06040.1| mCG140755 [Mus musculus]
          Length = 637

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT-YQANFPNTLIFGDIAKIK 60
           +++  LF GI    L L++      VE + +SE+   S+      +        DI  I 
Sbjct: 422 IRVLSLFDGIATGYLVLKELGIK--VEKYIASEVCAESIAVGTVKHEGQIKYVDDIRNIT 479

Query: 61  TQDIPD---HDVLLAGFPCQPFS 80
            + I +    D+++ G PC   S
Sbjct: 480 KEHIDEWGPFDLVIGGSPCNDLS 502


>gi|4704471|gb|AAD28102.1| cytosine DNA methyltransferase [Rattus norvegicus]
          Length = 349

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 16/67 (23%)

Query: 30 FFSSEINPYSVKTYQANFPNTLIF-------------GDIAKIKTQDIP---DHDVLLAG 73
           ++ E+   + + ++ N P T +F             G++     Q +P   D ++L  G
Sbjct: 1  LWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGG 60

Query: 74 FPCQPFS 80
           PCQ FS
Sbjct: 61 PPCQGFS 67


>gi|254452152|ref|ZP_05065589.1| DNA-cytosine methyltransferase [Octadecabacter antarcticus 238]
 gi|198266558|gb|EDY90828.1| DNA-cytosine methyltransferase [Octadecabacter antarcticus 238]
          Length = 488

 Score = 43.6 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 53/132 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT------YQANFPN----- 49
           I D+F G GG+                E   ++E++ ++ KT      Y+  FP+     
Sbjct: 7   IVDIFAGPGGLGEGFSALGRDTVRPFFETAIAAEMDKHAHKTLTLRAFYRQ-FPHQKAPQ 65

Query: 50  ------------------------------TLIFG---DIAKIKTQ---DIPDHD--VLL 71
                                          +  G   D A +  +    +   D  VLL
Sbjct: 66  SYYDYIAGKRETPYTDDTLAQWNNASQKVLHVELGKSEDDALLDKKLEVSLAGRDDWVLL 125

Query: 72  AGFPCQPFSQAG 83
            G PCQ +S  G
Sbjct: 126 GGPPCQAYSTIG 137


>gi|17231665|ref|NP_488213.1| cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|8453097|gb|AAF75232.1|AF220508_2 cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17133308|dbj|BAB75872.1| cytosine-specific DNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 385

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 29/105 (27%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPNTL---IFGD 55
           +   F G G + L  E           + +EI    +  Y+      N P +      GD
Sbjct: 7   VFSFFAGSGFLDLGFE----TSGFNIVYVNEIFSPFMAAYRYLREILNLPLSEYGYYQGD 62

Query: 56  IAKIK--TQDIP---------------DHDVLLAGFPCQPFSQAG 83
            A +    +  P               +    + G PC  FS  G
Sbjct: 63  TADVSKLVEGFPGKYLLDWVQECRKSNNIVGFIGGPPCPDFSIGG 107


>gi|330818898|ref|YP_004351115.1| C-5 cytosine-specific DNA methylase [Burkholderia gladioli BSR3]
 gi|327374440|gb|AEA65792.1| C-5 cytosine-specific DNA methylase [Burkholderia gladioli BSR3]
          Length = 828

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFP-NTLIFGDIAK 58
           I D F G GG    LE  F           +I    +P ++  +  N P    +  ++  
Sbjct: 26  IIDNFAGGGGTSTGLEAAFGRP-------VDIAINHDPQAIAMHALNHPRTKHLCENVWN 78

Query: 59  IKTQDI---PDHDVLLAGFPCQPFSQA 82
           +   ++       ++     C+ FS+A
Sbjct: 79  VDPIEVTQNRPVALVWLSPDCKHFSKA 105


>gi|326935591|ref|XP_003213853.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like, partial
           [Meleagris gallopavo]
          Length = 698

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 420 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRN 475

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 476 VTQKHIQEWGPFDLVIGGSPCNDLSI 501


>gi|293418093|ref|ZP_06660714.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
 gi|291430224|gb|EFF03223.1| DNA (cytosine-5-)-methyltransferase [Escherichia coli B185]
          Length = 363

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 25/99 (25%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI--------FGDIA 57
             F G G + L  E    H      F +E +   +  Y+ +     I         GDI 
Sbjct: 8   SFFSGSGFLDLGFE----HSGFNVGFVNEFHEAFLNAYKHSRIKMKIKEPYYGYHNGDIR 63

Query: 58  -------------KIKTQDIPDHDVLLAGFPCQPFSQAG 83
                        K+           + G PC  FS  G
Sbjct: 64  DLISGDGCIELLHKVNEAKGESLVGFIGGPPCPDFSVGG 102


>gi|291614414|ref|YP_003524571.1| C-5 cytosine-specific DNA methylase [Sideroxydans lithotrophicus
          ES-1]
 gi|291584526|gb|ADE12184.1| C-5 cytosine-specific DNA methylase [Sideroxydans lithotrophicus
          ES-1]
          Length = 609

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG     E            +   +P +V  +QAN P T  + + + ++  +
Sbjct: 15 IIDNFAGGGGASTGFELALGRH---VDVAINHDPEAVSMHQANHPQTRHYCESVWEVDPR 71

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
           +        L     C+ FS+A
Sbjct: 72 TVHPGRKIGALWLSPDCKHFSKA 94


>gi|71001130|ref|XP_755246.1| SNF2 family helicase [Aspergillus fumigatus Af293]
 gi|66852884|gb|EAL93208.1| SNF2 family helicase, putative [Aspergillus fumigatus Af293]
 gi|159129330|gb|EDP54444.1| SNF2 family helicase, putative [Aspergillus fumigatus A1163]
          Length = 2115

 Score = 43.6 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIPDH- 67
           E+   +      FS+EI P+     + NF    +F D+ ++K           + IP + 
Sbjct: 104 ERFGKNFEFRHLFSAEIVPFKQAYIERNFHPRFLFRDVKQLKNRFAQTAYGSLEKIPKNP 163

Query: 68  DVLLAGFPCQPFS 80
           D+++AGF C  FS
Sbjct: 164 DLVIAGFSCVDFS 176


>gi|254522834|ref|ZP_05134889.1| C-5 cytosine-specific DNA methylase [Stenotrophomonas sp. SKA14]
 gi|219720425|gb|EED38950.1| C-5 cytosine-specific DNA methylase [Stenotrophomonas sp. SKA14]
          Length = 651

 Score = 43.2 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNT---LIFGD 55
          ML + DLFCG GG+     +        V+    +   P +++T + N       +   D
Sbjct: 1  ML-VADLFCGAGGLSNGTARAMRQLGLPVQMIGVNHW-PVAIETNRRNHKEHADRIHCAD 58

Query: 56 IAKIKTQDI-PD--HDVLLAGFPCQPFSQA 82
          +       I P+   D+L A   C   S+A
Sbjct: 59 LESALPLTIVPEGRLDLLTAAPSCVFHSRA 88


>gi|154488616|ref|ZP_02029465.1| hypothetical protein BIFADO_01923 [Bifidobacterium adolescentis
           L2-32]
 gi|154082753|gb|EDN81798.1| hypothetical protein BIFADO_01923 [Bifidobacterium adolescentis
           L2-32]
          Length = 505

 Score = 43.2 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 37/135 (27%), Gaps = 55/135 (40%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQAN-------------- 46
           + DLF G GG+        +  +        S E+   +  T +                
Sbjct: 8   VIDLFAGPGGMSEGFSSLRDENDEPVFRSIMSIEMERTAHATLRLRAFARRLMDADGRLP 67

Query: 47  ---------------------FP------------NTLIFGDIAKIK--TQDIPDHD--- 68
                                 P             TL  GD   ++   + +  +D   
Sbjct: 68  QDYIDYLGTPSSENLERLKDSHPEEWAAAEAEAIQGTLKEGDDEFVEMAKKRLQGYDGPL 127

Query: 69  VLLAGFPCQPFSQAG 83
           VL+ G PCQ +S  G
Sbjct: 128 VLIGGPPCQAYSLVG 142


>gi|150400710|ref|YP_001324476.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
 gi|150013413|gb|ABR55864.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
          Length = 355

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 13/62 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+FCG+G   +  +           ++ +INP +V+  + N            I  DI
Sbjct: 220 VVDMFCGVGPFSIACKNAKK------IYAIDINPDAVELLKKNIKLNKLQHKIIPINNDI 273

Query: 57  AK 58
            K
Sbjct: 274 RK 275


>gi|256960248|ref|ZP_05564419.1| site-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|257423072|ref|ZP_05600062.1| site-specific DNA methylase [Enterococcus faecalis X98]
 gi|256950744|gb|EEU67376.1| site-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|257164896|gb|EEU94856.1| site-specific DNA methylase [Enterococcus faecalis X98]
          Length = 439

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAK 58
          +K  + D F G GG    +E            +   +P ++  ++AN PNT  + + +  
Sbjct: 1  MKEIVVDNFAGGGGASTGIEHAIGRS---VDVAINHDPDAIAMHEANHPNTKHYCESVWD 57

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +D+       +      C+ FS+A
Sbjct: 58 VHPRDVANGRPVALCWLSPDCKHFSKA 84


>gi|126465624|ref|YP_001040733.1| methyltransferase [Staphylothermus marinus F1]
 gi|126014447|gb|ABN69825.1| methyltransferase [Staphylothermus marinus F1]
          Length = 328

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDI--AK 58
           KI DLF GIGG  +       H++     ++++NPY+  +   N       + G+I   K
Sbjct: 181 KIIDLFSGIGGFPI--HIASMHKSF--ILANDLNPYAFVSIIDNILLNRKKLRGNIAVTK 236

Query: 59  IKTQDIPDH 67
           I  ++  + 
Sbjct: 237 IDAKEFMNF 245


>gi|288917811|ref|ZP_06412172.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
 gi|288350739|gb|EFC84955.1| DNA-cytosine methyltransferase [Frankia sp. EUN1f]
          Length = 389

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 55 DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          D+  ++  DI   D++  G PCQPFS +G
Sbjct: 66 DVENLELDDI---DLVAGGPPCQPFSISG 91


>gi|115946840|ref|XP_001180639.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 326

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DL+ GIG   L       H   +  ++ E NP++VK  + N
Sbjct: 22 TVVDLYAGIGYFTLPY---LVHAKAKLLYACEWNPHAVKALRTN 62


>gi|229188078|ref|ZP_04315163.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228595388|gb|EEK53123.1| Cytosine-specific methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 318

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 8  FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH 67
          F GIG  R  L       + +     E     VK Y A + +     D+           
Sbjct: 2  FGGIGAPRKALVNLG--IDHKAIDYVEWQANRVKAYNALYDHLHKPQDVRGWNL----KP 55

Query: 68 DVLLAGFPCQPFSQA 82
          D+L+ G PCQ  S+A
Sbjct: 56 DILVHGSPCQDNSRA 70


>gi|26346729|dbj|BAC37013.1| unnamed protein product [Mus musculus]
          Length = 618

 Score = 43.2 bits (102), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIK 60
           +++  LF GI    L L+      +     +SE+   S+          +++ GD+  + 
Sbjct: 411 IRVLSLFDGIATGLLVLKDLGIQVDHYI--ASEVCEDSITVGMVRHQGKIMYVGDVRSVT 468

Query: 61  TQDIPD---HDVLLAGFPCQPFSQ 81
            + I +    D+++ G PC   S 
Sbjct: 469 QKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|226227218|ref|YP_002761324.1| DNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090409|dbj|BAH38854.1| DNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 447

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKTQ 62
          I D F G GG  L +E                +  ++  +QAN P +  +  D+ ++   
Sbjct: 8  IIDSFAGGGGASLGIELALGRSPDVAINH---DAEAIALHQANHPTSKHYREDVWQVDPL 64

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
          +        ++     C+ FS+A
Sbjct: 65 EATGGRPVGLMWLSPDCKHFSKA 87


>gi|224613538|gb|ACN60348.1| DNA [Salmo salar]
          Length = 466

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 18/70 (25%)

Query: 28 ECFFSSE-INPYSVKTYQANFPNTLIF-------------GDIAKIKTQDIP---DHDVL 70
          E  ++ E  +P +   ++ N P T +F             G+      Q +P   D ++L
Sbjct: 1  ETLWAIEMWDPAAQA-FRLNNPGTTVFTEDCNVLLKLVMSGEKTNSLGQRLPQKGDVEML 59

Query: 71 LAGFPCQPFS 80
            G PCQ FS
Sbjct: 60 CGGPPCQGFS 69


>gi|115911664|ref|XP_798254.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
          purpuratus]
          Length = 334

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DL+ GIG   L       H   +  ++ E NP++VK  + N
Sbjct: 30 TVVDLYAGIGYFTLPY---LVHAKAKLLYACEWNPHAVKALRTN 70


>gi|327287014|ref|XP_003228224.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A [Anolis
           carolinensis]
 gi|289657686|gb|ADD14584.1| DNA methyltransferase 3A [Anolis carolinensis]
          Length = 689

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 411 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRN 466

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 467 VTQKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|330721358|gb|EGG99430.1| Modification methylase [gamma proteobacterium IMCC2047]
          Length = 318

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 39 SVKTYQANFPNTLIFGDIAKIKTQDIP------DHDVLLAGFPCQPFSQAG 83
          S +TY +  P  ++  DI  +  + I       D + ++ G PCQ FS  G
Sbjct: 4  SKQTYLSKHP--VLCEDINNLSYKSIKKEIGTKDVNFIIGGPPCQAFSVFG 52


>gi|294634575|ref|ZP_06713110.1| phage methyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291092089|gb|EFE24650.1| phage methyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 336

 Score = 43.2 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+PY+ K  +         P  +    I  +   D+                    
Sbjct: 6  YYNEIDPYAAKWLRNLIAEGHIAPGEVDERSIEDVTPDDLRGFTQCHFFAGIGVWSLALR 65

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 66 RAGWPDDLPVWTGSCPCQPFSAAG 89


>gi|240145560|ref|ZP_04744161.1| putative C-5 cytosine-specific DNA methylase [Roseburia
           intestinalis L1-82]
 gi|257202377|gb|EEV00662.1| putative C-5 cytosine-specific DNA methylase [Roseburia
           intestinalis L1-82]
          Length = 586

 Score = 43.2 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
           I D F G GG    +E           +S +I    +P ++K ++AN PNT  +  ++  
Sbjct: 26  IVDNFAGGGGASTGIEMATG-------YSVDIAINHDPEAIKMHKANHPNTKHYCENVWA 78

Query: 59  IKT-QDIPDHDVLLA--GFPCQPFSQA 82
           +   +    H V LA     C+ FS+A
Sbjct: 79  VDPVKACNGHPVALAWFSPDCKHFSKA 105


>gi|282535271|gb|ADA82477.1| putative C-specific methylase [Escherichia phage K1ind3]
 gi|282547372|gb|ADA82428.1| putative C-specific methylase [Escherichia phage K1ind2]
          Length = 309

 Score = 43.2 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQANFP-NTLIFG-----DIAKIKTQDI-------------------- 64
          + +E +  +    +       + FG      I ++K +D+                    
Sbjct: 3  YYNEWDKGAAAWLRELIKQGHIPFGVVDERSITEVKPEDLDGFTQCHFFAGIGGWPLALR 62

Query: 65 -----PDHDVLLAGFPCQPFSQAG 83
                D  +     PCQPFS AG
Sbjct: 63 LAGVPEDAPLWTGSPPCQPFSAAG 86


>gi|320009148|gb|ADW03998.1| hypothetical protein Sfla_2569 [Streptomyces flavogriseus ATCC
          33331]
          Length = 221

 Score = 43.2 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 16/81 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-----I 56
          L++ DL CG GG+ +                  ++ + +     N+P T    D      
Sbjct: 14 LRVLDLCCGAGGLSMGYYLAGYDVTG-------VDLHPMP----NYPFTFRQADALDYLA 62

Query: 57 AKIKTQDIPDHDVLLAGFPCQ 77
            + + +I  +DV+ A +PCQ
Sbjct: 63 TIVASGEIERYDVVHASWPCQ 83


>gi|281357227|ref|ZP_06243716.1| DNA-cytosine methyltransferase [Victivallis vadensis ATCC BAA-548]
 gi|281316258|gb|EFB00283.1| DNA-cytosine methyltransferase [Victivallis vadensis ATCC BAA-548]
          Length = 656

 Score = 43.2 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 48  PNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
                 GD  KI   D     ++L+ G PCQ +S AG
Sbjct: 79  GTVPNLGDFTKITKDDYEGKIELLVGGTPCQSYSLAG 115


>gi|119480763|ref|XP_001260410.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
           NRRL 181]
 gi|119408564|gb|EAW18513.1| C-5 cytosine-specific DNA methylase, putative [Neosartorya fischeri
           NRRL 181]
          Length = 2130

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIPDH- 67
           E    +      FS+EI P+     + NF    +F D+ ++K           + IP + 
Sbjct: 103 ESFGKNFEFRHLFSAEIVPFKQAYIERNFHPRFLFRDVKQLKDRFAQTAYGSLEKIPKNP 162

Query: 68  DVLLAGFPCQPFS 80
           D+++AGF C  FS
Sbjct: 163 DLVIAGFSCVDFS 175


>gi|121698875|ref|XP_001267835.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
           NRRL 1]
 gi|119395977|gb|EAW06409.1| C-5 cytosine-specific DNA methylase, putative [Aspergillus clavatus
           NRRL 1]
          Length = 2150

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 23  NHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIPD-HDVLL 71
            + +    FS+EI P+     + NF    +F D+A++K           + IP   D+L+
Sbjct: 142 KNFDFRHLFSAEIVPFKQAYIERNFHPRFLFRDVAQLKDRVAQTAYGSLEKIPKNADLLI 201

Query: 72  AGFPCQPFS 80
           AGF C  FS
Sbjct: 202 AGFSCVDFS 210


>gi|299744877|ref|XP_001831325.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
 gi|298406330|gb|EAU90488.2| DNA repair protein rad8 [Coprinopsis cinerea okayama7#130]
          Length = 2184

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--------IP---DH 67
           +Q      VE  FS EI P+     + NF   ++F D+ ++   +        +P   D 
Sbjct: 96  DQHGIKLEVEHVFSCEIEPFKQAYIERNFQPPILFRDVCELGDDEAHTAYGALVPVPGDV 155

Query: 68  DVLLAGFPCQPFS 80
           D+L+AG  C  +S
Sbjct: 156 DMLVAGTSCVDYS 168


>gi|32350983|gb|AAP75902.1| DNA methyltransferase 3a isoform 4 [Bos taurus]
          Length = 821

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 543 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 598

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 599 VTQKHIQEWGPFDLVIGGSPCNDLSI 624


>gi|330417960|ref|NP_001193431.1| DNA (cytosine-5)-methyltransferase 3A [Bos taurus]
          Length = 909

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 631 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 686

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 687 VTQKHIQEWGPFDLVIGGSPCNDLSI 712


>gi|301756030|ref|XP_002913875.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
           3A-like [Ailuropoda melanoleuca]
          Length = 957

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 679 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 734

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 735 VTQKHIQEWGPFDLVIGGSPCNDLSI 760


>gi|291387188|ref|XP_002710120.1| PREDICTED: DNA cytosine methyltransferase 3 alpha [Oryctolagus
           cuniculus]
          Length = 940

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 662 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 717

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 718 VTQKHIQEWGPFDLVIGGSPCNDLSI 743


>gi|194035597|ref|XP_001927670.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Sus
           scrofa]
          Length = 439

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRNNLELNGVADRCQIHFGDN 285

Query: 57  AKIKTQDIPD 66
            K++  +I D
Sbjct: 286 RKLRLSNIAD 295


>gi|167774091|gb|ABZ92480.1| DNA (cytosine-5-)-methyltransferase 3 alpha [synthetic construct]
          Length = 912

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 634 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 689

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 690 VTQKHIQEWGPFDLVIGGSPCNDLSI 715


>gi|149727718|ref|XP_001503030.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 3 alpha [Equus
           caballus]
          Length = 909

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 631 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 686

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 687 VTQKHIQEWGPFDLVIGGSPCNDLSI 712


>gi|119621133|gb|EAX00728.1| DNA (cytosine-5-)-methyltransferase 3 alpha, isoform CRA_b [Homo
           sapiens]
          Length = 914

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 636 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 691

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 692 VTQKHIQEWGPFDLVIGGSPCNDLSI 717


>gi|114576486|ref|XP_001148246.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           isoform 1 [Pan troglodytes]
 gi|114576488|ref|XP_001148658.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           isoform 4 [Pan troglodytes]
          Length = 909

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 631 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 686

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 687 VTQKHIQEWGPFDLVIGGSPCNDLSI 712


>gi|32350981|gb|AAP75901.1| DNA methyltransferase 3a [Bos taurus]
          Length = 888

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 610 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 665

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 666 VTQKHIQEWGPFDLVIGGSPCNDLSI 691


>gi|13938621|gb|AAH07466.1| DNA methyltransferase 3A [Mus musculus]
          Length = 908

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 630 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 685

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 686 VTQKHIQEWGPFDLVIGGSPCNDLSI 711


>gi|73980626|ref|XP_540110.2| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           isoform a [Canis familiaris]
          Length = 969

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 691 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 746

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 747 VTQKHIQEWGPFDLVIGGSPCNDLSI 772


>gi|12751473|ref|NP_072046.2| DNA (cytosine-5)-methyltransferase 3A isoform a [Homo sapiens]
 gi|28559069|ref|NP_783328.1| DNA (cytosine-5)-methyltransferase 3A isoform a [Homo sapiens]
 gi|166215081|sp|Q9Y6K1|DNM3A_HUMAN RecName: Full=DNA (cytosine-5)-methyltransferase 3A; Short=Dnmt3a;
           AltName: Full=DNA methyltransferase HsaIIIA; Short=DNA
           MTase HsaIIIA; Short=M.HsaIIIA
 gi|12746532|gb|AAD33084.2|AF067972_1 DNA cytosine methyltransferase 3 alpha [Homo sapiens]
 gi|27694444|gb|AAH43617.1| DNA (cytosine-5-)-methyltransferase 3 alpha [Homo sapiens]
 gi|62822212|gb|AAY14761.1| unknown [Homo sapiens]
 gi|119621132|gb|EAX00727.1| DNA (cytosine-5-)-methyltransferase 3 alpha, isoform CRA_a [Homo
           sapiens]
 gi|261859196|dbj|BAI46120.1| DNA (cytosine-5-)-methyltransferase 3 alpha [synthetic construct]
          Length = 912

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 634 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 689

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 690 VTQKHIQEWGPFDLVIGGSPCNDLSI 715


>gi|51556225|ref|NP_001003958.1| DNA (cytosine-5)-methyltransferase 3A isoform 1 [Rattus norvegicus]
 gi|123778851|sp|Q1LZ53|DNM3A_RAT RecName: Full=DNA (cytosine-5)-methyltransferase 3A; Short=Dnmt3a
 gi|50539389|tpe|CAE52317.1| TPA: putative DNA (cytosine-5) methyltransferase 3a [Rattus
           norvegicus]
          Length = 908

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 630 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 685

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 686 VTQKHIQEWGPFDLVIGGSPCNDLSI 711


>gi|18033253|gb|AAL57039.1|AF331856_1 DNA cytosine methyltransferase 3 alpha [Homo sapiens]
          Length = 909

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 631 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 686

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 687 VTQKHIQEWGPFDLVIGGSPCNDLSI 712


>gi|6681209|ref|NP_031898.1| DNA (cytosine-5)-methyltransferase 3A isoform 1 [Mus musculus]
 gi|17374900|sp|O88508|DNM3A_MOUSE RecName: Full=DNA (cytosine-5)-methyltransferase 3A; Short=Dnmt3a;
           AltName: Full=DNA methyltransferase MmuIIIA; Short=DNA
           MTase MmuIIIA; Short=M.MmuIIIA
 gi|6449468|gb|AAC40177.2| DNA cytosine-5 methyltransferase 3A [Mus musculus]
 gi|26354967|dbj|BAC41110.1| unnamed protein product [Mus musculus]
 gi|74181067|dbj|BAE27806.1| unnamed protein product [Mus musculus]
 gi|74188565|dbj|BAE28033.1| unnamed protein product [Mus musculus]
 gi|74188590|dbj|BAE28043.1| unnamed protein product [Mus musculus]
 gi|74188648|dbj|BAE28067.1| unnamed protein product [Mus musculus]
 gi|148669440|gb|EDL01387.1| DNA methyltransferase 3A, isoform CRA_a [Mus musculus]
          Length = 908

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 630 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 685

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 686 VTQKHIQEWGPFDLVIGGSPCNDLSI 711


>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa]
 gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]
          Length = 609

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 22/95 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFG------ 54
           + +  LF GIGG  + L +   H + V    +SE N    +  +  + ++   G      
Sbjct: 486 ITVLSLFSGIGGAEITLHRLGIHLKGVVSVETSETN---RRVLKRWWYSSGQTGRLEQIE 542

Query: 55  DIAKIKTQDIPD-------HDVLLAGFPCQ-PFSQ 81
           DI K+ +  +          D ++    CQ  F++
Sbjct: 543 DIRKLTSSTVERLVENFVCFDFVI----CQNSFTR 573


>gi|38707957|ref|NP_945098.1| gp67 [Burkholderia phage phi1026b]
 gi|38505449|gb|AAR23218.1| gp67 [Burkholderia phage phi1026b]
          Length = 433

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 32/99 (32%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNV--ECFFSSE-----------------INPYSVKTYQA 45
           +L  G+G +   +     H  +        E                 I+         
Sbjct: 9  IELCAGVGMLGEGVRTALEHFGIGHRTVCYVEREATAAAQLAALMEAEAIDQ-------- 60

Query: 46 NFPNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
                I+ D+            D ++AGFPCQ  S AG
Sbjct: 61 ----APIWSDLLTFDGAAWRGRVDCVIAGFPCQDLSVAG 95


>gi|303279905|ref|XP_003059245.1| TWY3 methyltransferase [Micromonas pusilla CCMP1545]
 gi|226459081|gb|EEH56377.1| TWY3 methyltransferase [Micromonas pusilla CCMP1545]
          Length = 1079

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DL+ GIG   L   Q   H  V   ++ E NP SV   + N
Sbjct: 489 TVVDLYAGIGYYTL---QLLKHAGVSKVYACEWNPNSVAALKKN 529


>gi|107024103|ref|YP_622430.1| DNA (cytosine-5-)-methyltransferase [Burkholderia cenocepacia AU
          1054]
 gi|116688030|ref|YP_833653.1| DNA (cytosine-5-)-methyltransferase [Burkholderia cenocepacia
          HI2424]
 gi|105894292|gb|ABF77457.1| DNA (cytosine-5-)-methyltransferase [Burkholderia cenocepacia AU
          1054]
 gi|116646119|gb|ABK06760.1| DNA (cytosine-5-)-methyltransferase [Burkholderia cenocepacia
          HI2424]
          Length = 38

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 20 QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            F     EC F+SE N +S KTY  N+ +   F GD
Sbjct: 1  MGFEAHGGECVFTSEWNDFSKKTYLENYGDRHPFVGD 37


>gi|302415627|ref|XP_003005645.1| DNA methyltransferase Dim-2 [Verticillium albo-atrum VaMs.102]
 gi|261355061|gb|EEY17489.1| DNA methyltransferase Dim-2 [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN----TLIFGDIAKIKT 61
           DLFCG G     LE++     +E  ++++IN  +V TY AN  +    +   G I  + T
Sbjct: 790 DLFCGGGNFGRGLEESGA---IEMRWANDINMRAVHTYMANLDDPSRVSPFAGSIDDLTT 846


>gi|62087246|dbj|BAD92070.1| DNA cytosine methyltransferase 3 alpha isoform a variant [Homo
           sapiens]
          Length = 811

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 664 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 719

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 720 VTQKHIQEWGPFDLVIGGSPCNDLSI 745


>gi|224823639|ref|ZP_03696748.1| C-5 cytosine-specific DNA methylase [Lutiella nitroferrum 2002]
 gi|224604094|gb|EEG10268.1| C-5 cytosine-specific DNA methylase [Lutiella nitroferrum 2002]
          Length = 610

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIF-GDIAK 58
          I DLF G GG    +E              +I    +  ++  ++AN P T  +  D+ +
Sbjct: 15 IVDLFAGGGGKSTGIEHALGR-------HVDIAINHDSDAISMHEANHPQTEHYCADVFE 67

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +          L     C  FSQA
Sbjct: 68 VCPRTATRGRPVGHLHGSPDCTHFSQA 94


>gi|153867953|ref|ZP_01998119.1| hypothetical protein BGS_0003 [Beggiatoa sp. SS]
 gi|152144728|gb|EDN71882.1| hypothetical protein BGS_0003 [Beggiatoa sp. SS]
          Length = 52

 Score = 42.8 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 1  MLKITDLFCGIGGIRLDLEQ 20
          ++KI DLF GIGG+ L  ++
Sbjct: 3  IMKIIDLFAGIGGLSLGFQK 22


>gi|332243317|ref|XP_003270826.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A [Nomascus
           leucogenys]
          Length = 891

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 613 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 668

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 669 VTQKHIQEWGPFDLVIGGSPCNDLSI 694


>gi|240851538|ref|NP_001155876.1| DNA (cytosine-5)-methyltransferase 3B [Sus scrofa]
 gi|226222434|gb|ACO38648.1| DNA methyltransferase 3B [Sus scrofa]
          Length = 852

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  L  GI    L L++           +SE+   S+      ++ N        +I 
Sbjct: 574 IRVLSLLDGIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 631

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 632 KKNIEEWGPFDLVIGGSPCNDLS 654


>gi|327348877|gb|EGE77734.1| SNF2 family helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 2158

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 21/99 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQT--------FNHRNVECFFSSEINPYSVKTY-QANFPNTLI 52
           L++  +  G     L LE              ++   FS+EI+P+  ++Y Q NF   +I
Sbjct: 138 LRVATMCSGTEAPLLALEMAIASFKKIFGKTFSMHHLFSAEIDPF-KQSYIQRNFSPDII 196

Query: 53  FGDIAKIKTQD----------IP-DHDVLLAGFPCQPFS 80
           F D+ ++   +          +P + D+L+ GF C  FS
Sbjct: 197 FRDVNELIADEATTAFGSLRKVPSNLDLLVVGFSCVDFS 235


>gi|239610686|gb|EEQ87673.1| SNF2 family helicase [Ajellomyces dermatitidis ER-3]
          Length = 1945

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 21/99 (21%)

Query: 2   LKITDLFCGIGGIRLDLEQT--------FNHRNVECFFSSEINPYSVKTY-QANFPNTLI 52
           L++  +  G     L LE              ++   FS+EI+P+  ++Y Q NF   +I
Sbjct: 138 LRVATMCSGTEAPLLALEMAIASFKKIFGKTFSMHHLFSAEIDPF-KQSYIQRNFSPDII 196

Query: 53  FGDIAKIKTQD----------IP-DHDVLLAGFPCQPFS 80
           F D+ ++   +          +P + D+L+ GF C  FS
Sbjct: 197 FRDVNELIADEATTAFGSLRKVPSNLDLLVVGFSCVDFS 235


>gi|302531913|ref|ZP_07284255.1| phage protein [Streptomyces sp. AA4]
 gi|302440808|gb|EFL12624.1| phage protein [Streptomyces sp. AA4]
          Length = 516

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 24 HRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          H  ++  +++     +++T+ ANFP+T+    +I+++  +     D+L A   C   S A
Sbjct: 2  HPWLKTVYAANHWEQAIETHAANFPDTIHTIVNISQVNPRFFATTDLLWASPECTNHSGA 61


>gi|221507944|gb|EEE33531.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 754

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
            + DLFCGIG   L          ++  ++ + N  +++ ++A
Sbjct: 488 TVVDLFCGIGYFSLAALTCAGADKLKHLYACDWNQDALQFFEA 530


>gi|221483474|gb|EEE21793.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 754

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
            + DLFCGIG   L          ++  ++ + N  +++ ++A
Sbjct: 488 TVVDLFCGIGYFSLAALTCAGADKLKHLYACDWNQDALQFFEA 530


>gi|237839183|ref|XP_002368889.1| hypothetical protein TGME49_034490 [Toxoplasma gondii ME49]
 gi|211966553|gb|EEB01749.1| hypothetical protein TGME49_034490 [Toxoplasma gondii ME49]
          Length = 754

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
            + DLFCGIG   L          ++  ++ + N  +++ ++A
Sbjct: 488 TVVDLFCGIGYFSLAALTCAGADKLKHLYACDWNQDALQFFEA 530


>gi|221126212|ref|XP_002159378.1| PREDICTED: similar to tRNA wybutosine-synthesizing protein 2
           homolog, partial [Hydra magnipapillata]
          Length = 490

 Score = 42.8 bits (101), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 4   ITDLFCGIGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L  L +   H      ++ E NP ++   + N
Sbjct: 304 IVDLFAGIGYFTLPYLVKARAH----TVYACEWNPNAIIALKRN 343


>gi|282533168|gb|ADA82277.1| putative C-specific methylase [Escherichia phage K1G]
 gi|282534219|gb|ADA82327.1| putative C-specific methylase [Escherichia phage K1H]
          Length = 274

 Score = 42.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQANFP-NTLIFG-----DIAKIKTQDI-------------------- 64
          + +E +  +    +       + FG      I ++K +D+                    
Sbjct: 3  YYNEWDKGAAAWLRELIKQGHIPFGVVDERSITEVKPEDLDGFTQCHFFAGIGGWPLALR 62

Query: 65 -----PDHDVLLAGFPCQPFSQAG 83
                D  +     PCQPFS AG
Sbjct: 63 LAGVPEDAPLWTGSPPCQPFSAAG 86


>gi|194389584|dbj|BAG61753.1| unnamed protein product [Homo sapiens]
          Length = 728

 Score = 42.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT----YQANFPNTLIFGDIA 57
           +++  LF  I    L L++           +SE+   S+      ++ N        +I 
Sbjct: 513 IRVLSLFDDIATGYLVLKELGIKVGKYV--ASEVCEESIAVGTVKHEGNIKYVNDVRNIT 570

Query: 58  KIKTQDIPDHDVLLAGFPCQPFS 80
           K   ++    D+++ G PC   S
Sbjct: 571 KKNIEEWGPFDLVIGGSPCNDLS 593


>gi|47212796|emb|CAF96171.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2195

 Score = 42.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 15   RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDI---PDHDVL 70
             L  +       VE + +SE+   S+     N    +   GD+  I  + +      D+L
Sbjct: 1868 DLGFK-------VETYIASEVCEDSIAVAAVNHEGKITQVGDVRFINQEQLHRWGPFDLL 1920

Query: 71   LAGFPCQPFSQ 81
            + G PC   S 
Sbjct: 1921 IGGSPCNDLSI 1931



 Score = 38.6 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 50  TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
                DI K    +    D+++ G PC   S 
Sbjct: 529 VHDVRDITKKNIMEWGPFDLVIGGSPCNDLSI 560


>gi|282547320|gb|ADA82377.1| putative C-specific methylase [Escherichia phage K1ind1]
          Length = 274

 Score = 42.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQANFP-NTLIFG-----DIAKIKTQDI-------------------- 64
          + +E +  +    +       + FG      I ++K +D+                    
Sbjct: 3  YYNEWDKGAAAWLRELIKQGHIPFGVVDERSITEVKPEDLDGFTQCHFFAGIGGWPLALR 62

Query: 65 -----PDHDVLLAGFPCQPFSQAG 83
                D  +     PCQPFS AG
Sbjct: 63 LAGVPEDAPLWTGSPPCQPFSAAG 86


>gi|256393200|ref|YP_003114764.1| C-5 cytosine-specific DNA methylase [Catenulispora acidiphila DSM
           44928]
 gi|256359426|gb|ACU72923.1| C-5 cytosine-specific DNA methylase [Catenulispora acidiphila DSM
           44928]
          Length = 438

 Score = 42.8 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 7   LFCGIGGIRLDLEQTF----NHRNVECFFSSEINPYSVKTYQANF---PNTLIFGDIAKI 59
           L  G GG  L L +         N E           +++  AN+          DIA +
Sbjct: 34  LLAGGGGDTLGLWEAGFLPLYGGNHEAV--------CIESLIANWAGLGTEHELADIAHL 85

Query: 60  KTQDIPDHDVLLAGFPCQPFSQAG 83
              D+P  DVL A   C   S AG
Sbjct: 86  AMSDLPSSDVLWASVICTEVSPAG 109


>gi|254191931|ref|ZP_04898431.1| DNA cytosine methyltransferase [Burkholderia pseudomallei Pasteur
          52237]
 gi|157987753|gb|EDO95518.1| DNA cytosine methyltransferase [Burkholderia pseudomallei Pasteur
          52237]
          Length = 661

 Score = 42.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    LE+ F           +I    +  ++  + AN P+T  + + +  
Sbjct: 17 IVDNFAGGGGASTGLERAFGRP-------VDIAINHDLEALAMHAANHPHTTHYCESVFD 69

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +   +I       ++     C+ FS+A
Sbjct: 70 VDPVEITGNRPVGLVWLSPDCKHFSKA 96


>gi|297526093|ref|YP_003668117.1| protein of unknown function Met10 [Staphylothermus hellenicus DSM
           12710]
 gi|297255009|gb|ADI31218.1| protein of unknown function Met10 [Staphylothermus hellenicus DSM
           12710]
          Length = 328

 Score = 42.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 14/72 (19%)

Query: 3   KITDLFCGIGGIRL---DLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDI- 56
           KI DLF GIGG  +    + + F         ++++NPY+  +   N       + G+I 
Sbjct: 181 KIIDLFSGIGGFPIHIASMHKAF-------ILANDLNPYAFVSIIDNILLNKKKLIGNIA 233

Query: 57  -AKIKTQDIPDH 67
             +I  ++  + 
Sbjct: 234 VTRIDAREFTNF 245


>gi|315230383|ref|YP_004070819.1| tRNA (Guanine37-N1) -methyltransferase [Thermococcus barophilus MP]
 gi|315183411|gb|ADT83596.1| tRNA (Guanine37-N1) -methyltransferase [Thermococcus barophilus MP]
          Length = 330

 Score = 42.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNT-LIFGDIA 57
           + D+F G+G   + L +      V   F+ +INP++VK  + N      PN   I GD+ 
Sbjct: 185 VFDMFAGVGPYSILLAK-----KVRLVFACDINPWAVKYLEENKRLNKTPNVIPILGDVR 239

Query: 58  KIKTQ 62
           K+  Q
Sbjct: 240 KVAGQ 244


>gi|14520947|ref|NP_126422.1| hypothetical protein PAB0505 [Pyrococcus abyssi GE5]
 gi|74547078|sp|Q9V0Q0|TRM5B_PYRAB RecName: Full=tRNA (guanine-N(1)-)-methyltransferase Trm5b;
           AltName: Full=M1G-methyltransferase; AltName: Full=tRNA
           [GM37] methyltransferase
 gi|5458164|emb|CAB49653.1| Hypothetical protein, Met-10+ like protein [Pyrococcus abyssi GE5]
          Length = 330

 Score = 42.8 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIA 57
           + D+F G+G   + L +       E  F+ +INP+++K  + N           I GD  
Sbjct: 186 VFDMFAGVGPFSILLAK-----KAELVFACDINPWAIKYLEENIKLNKVNNVVPILGDSR 240

Query: 58  KIKTQ 62
           +I+ +
Sbjct: 241 EIEVK 245


>gi|301619771|ref|XP_002939257.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Xenopus
           (Silurana) tropicalis]
          Length = 408

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           +  GD 
Sbjct: 229 VVDLYSGIGYFTLPY---LVHAGASFVHACEWNPHAVSALKKNLVINRVSDKCHIHEGDN 285

Query: 57  AKIKTQDIPD 66
            ++   D+ D
Sbjct: 286 RQLTLSDVAD 295


>gi|303244608|ref|ZP_07330941.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
 gi|302485034|gb|EFL47965.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
          Length = 345

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + D+FCG+G   +  +           ++ +INP +++  + N     +   I  I  +D
Sbjct: 208 VVDMFCGVGPFSIACKNAKK------IYAIDINPNAIELLKKNIELNRLQNKITPI-LKD 260

Query: 64  IPDHDV 69
           +   DV
Sbjct: 261 VRMVDV 266


>gi|221369948|ref|YP_002521044.1| Modification methylase [Rhodobacter sphaeroides KD131]
 gi|221163000|gb|ACM03971.1| Modification methylase [Rhodobacter sphaeroides KD131]
          Length = 540

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 33/133 (24%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQT--FNHRNVECFFSSEINPYSVKT---------YQANFP---- 48
           I DLF G GG+           H       S E    + +T         YQA       
Sbjct: 7   IVDLFAGPGGLGEGFASLDVGGHAPFRIGISVEKEASAHRTLTLRAFLRAYQARHGVLPQ 66

Query: 49  -------NTLIFGDIAKIKTQDI-----------------------------PDHD--VL 70
                    +   D + +                                   + D  +L
Sbjct: 67  AFIDFHAGLIPEPDWSAVDAAAWQRATAEAQCLELGTEPAAAAIDHAIGALRREFDDTIL 126

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S  G
Sbjct: 127 IGGPPCQAYSLVG 139


>gi|185177639|pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
           Methyltransferase
 gi|185177640|pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
           Methyltransferase
          Length = 336

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D F G+G   +  +           ++ +INP++++  + N            I  D+
Sbjct: 199 VVDXFAGVGPFSIACKNAKK------IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|169600707|ref|XP_001793776.1| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
 gi|160705497|gb|EAT89929.2| hypothetical protein SNOG_03198 [Phaeosphaeria nodorum SN15]
          Length = 2117

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 14  IRLDLEQTFNHR-NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--------- 63
               LEQ+ +    V   F++EI  +     + N    +IF D+ +  ++D         
Sbjct: 272 FSKALEQSGHSSLRVHQKFAAEIEVFKQAFIERNQAPEIIFRDVREFISEDATTAITAYG 331

Query: 64  ----IPD-HDVLLAGFPCQPFSQ 81
               IP   DVL+AGF C+  S+
Sbjct: 332 AEEHIPSGLDVLIAGFVCKDLSR 354


>gi|145345811|ref|XP_001417393.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577620|gb|ABO95686.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 2017

 Score = 42.4 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-DHDVLLAGFPCQP 78
            FS EI P+     + NF   ++F DI ++             ++P D D+L+AG  C  
Sbjct: 110 VFSCEIEPFKQAYIERNFAPPILFRDIRELGGDQATTAYGAKINVPHDVDMLVAGTSCVD 169

Query: 79  FS 80
           +S
Sbjct: 170 YS 171


>gi|313244000|emb|CBY14873.1| unnamed protein product [Oikopleura dioica]
          Length = 552

 Score = 42.4 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 27  VECFFSSEINPYSVKTYQANF---PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           ++   + +IN  +   Y+ N       +I  DI     +    ++ L    PCQPF++ G
Sbjct: 178 LQVLSAMDINNNATSCYKLNHMSMEKDVINTDINAAPWEQTSGYNTLAMSPPCQPFTRNG 237


>gi|238027667|ref|YP_002911898.1| methyltransferase [Burkholderia glumae BGR1]
 gi|237876861|gb|ACR29194.1| Methyltransferase, putative [Burkholderia glumae BGR1]
          Length = 288

 Score = 42.4 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+PY+ +  +         P  +    I  ++  D+                    
Sbjct: 4  YYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVRPDDLRGYTQCHFFAGLGGWSRALR 63

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 64 LAGWPDDRPVWTGSCPCQPFSVAG 87


>gi|323448404|gb|EGB04303.1| hypothetical protein AURANDRAFT_67350 [Aureococcus anophagefferens]
          Length = 1846

 Score = 42.4 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 2    LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDI 56
            +++   + GIGG    L++ +       +   + +    S + ++  FP   +   I
Sbjct: 1266 IQVIVFYSGIGGFDKGLQRAWEKHGAAFKVVLAIDNCELSNEIHRNTFPGVTVVNHI 1322


>gi|4520381|dbj|BAA75917.1| MTE8-ECOLI homolog~similar to methyltransferase [Pseudomonas
          putida]
          Length = 298

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+PY+ +  +         P  +    I  +   D+                    
Sbjct: 4  YYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLKPYTQCHFFAGVGVWSYALR 63

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 64 RAGWPDDRPVWTGSCPCQPFSAAG 87


>gi|317033838|ref|XP_001395547.2| C-5 cytosine-specific DNA methylase [Aspergillus niger CBS 513.88]
          Length = 2044

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)

Query: 16  LDLEQTFNHR------NVEC--FFSSEINPYSVKTY-QANFPNTLIFGDIAKIK------ 60
           L LE    H       N E    FS+EI+P   + Y Q NF    +F D+ ++       
Sbjct: 121 LALEMVQKHLREQFNMNFEIRHIFSAEIDPL-RQAYIQRNFRPPRLFRDVKELNHRVAQT 179

Query: 61  ----TQDIPDH-DVLLAGFPCQPFS 80
                + +P + D+L+AGF C  FS
Sbjct: 180 AYGSLEKVPKNPDILVAGFSCVDFS 204


>gi|190337628|gb|AAI63546.1| Dnmt7 protein [Danio rerio]
          Length = 1456

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            +++  LF GI  G +    L  +       +E + +SEI   S+          + +  D
Sbjct: 1178 IRVLSLFDGIATGYLVLKDLGFK-------LERYIASEICEDSIAVGMVKHEGKIEYVKD 1230

Query: 56   IAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
            +  I  + + +    D+L+ G PC   S 
Sbjct: 1231 VRTITRKHLAEWGPFDLLIGGSPCNDLSM 1259


>gi|134080265|emb|CAK97168.1| unnamed protein product [Aspergillus niger]
          Length = 2138

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)

Query: 16  LDLEQTFNHR------NVEC--FFSSEINPYSVKTY-QANFPNTLIFGDIAKIK------ 60
           L LE    H       N E    FS+EI+P   + Y Q NF    +F D+ ++       
Sbjct: 121 LALEMVQKHLREQFNMNFEIRHIFSAEIDPL-RQAYIQRNFRPPRLFRDVKELNHRVAQT 179

Query: 61  ----TQDIPDH-DVLLAGFPCQPFS 80
                + +P + D+L+AGF C  FS
Sbjct: 180 AYGSLEKVPKNPDILVAGFSCVDFS 204


>gi|149050844|gb|EDM03017.1| DNA methyltransferase 3A [Rattus norvegicus]
          Length = 728

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 450 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 505

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 506 VTQKHIQEWGPFDLVIGGSPCNDLSI 531


>gi|17390482|gb|AAH18214.1| DNMT3A protein [Homo sapiens]
          Length = 285

 Score = 42.4 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
          +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 7  IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 62

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQ 81
          +  + I +    D+++ G PC   S 
Sbjct: 63 VTQKHIQEWGPFDLVIGGSPCNDLSI 88


>gi|296482345|gb|DAA24460.1| DNA (cytosine-5-)-methyltransferase 3 alpha [Bos taurus]
          Length = 723

 Score = 42.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 445 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 500

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 501 VTQKHIQEWGPFDLVIGGSPCNDLSI 526


>gi|161761041|pdb|2QRV|A Chain A, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 gi|161761044|pdb|2QRV|D Chain D, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 gi|161761045|pdb|2QRV|E Chain E, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
 gi|161761048|pdb|2QRV|H Chain H, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
          Length = 295

 Score = 42.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
          +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 17 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 72

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQ 81
          +  + I +    D+++ G PC   S 
Sbjct: 73 VTQKHIQEWGPFDLVIGGSPCNDLSI 98


>gi|291388505|ref|XP_002710656.1| PREDICTED: hypothetical protein, partial [Oryctolagus cuniculus]
          Length = 391

 Score = 42.4 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DL+ GIG   L       H       + E NP++V   + N
Sbjct: 229 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVAALRKN 268


>gi|258588219|pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
          Length = 336

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+F G+G   +  +           ++ +INP++++    N            I  D+
Sbjct: 199 VVDMFAGVGPFSIACKNAKK------IYAIDINPHAIELLXKNIKLNKLEHKIIPILSDV 252

Query: 57  AKIKTQ 62
            ++  +
Sbjct: 253 REVDVK 258


>gi|417325|sp|P15840|MTSI_SPISQ RecName: Full=CPG DNA methylase; AltName: Full=Cytosine-specific
           methyltransferase SssI; Short=M.SssI
 gi|66468|pir||CTYMCS site-specific DNA-methyltransferase (cytosine-specific) (EC
           2.1.1.73) SssI - Spiroplasma sp. (strain MQ1)
 gi|47553|emb|CAA35058.1| unnamed protein product [Spiroplasma sp.]
          Length = 386

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 39/139 (28%), Gaps = 58/139 (41%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSE--------------------------- 34
           L++ + F GIG  R  LE+       E    +E                           
Sbjct: 11  LRVFEAFAGIGAQRKALEKVRKDE-YEIVGLAEWYVPAIVMYQAIHNNFHTKLEYKSVSR 69

Query: 35  ---INPYSVKTYQANFPNTLIFG---------------------------DIAKIKTQDI 64
              I+    KT   N  N +  G                           DI  +  + +
Sbjct: 70  EEMIDYLENKTLSWNSKNPVSNGYWKRKKDDELKIIYNAIKLSEKEGNIFDIRDLYKRTL 129

Query: 65  PDHDVLLAGFPCQPFSQAG 83
            + D+L   FPCQ  SQ G
Sbjct: 130 KNIDLLTYSFPCQDLSQQG 148


>gi|109102239|ref|XP_001083358.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A isoform 2 [Macaca
           mulatta]
          Length = 723

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 445 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 500

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 501 VTQKHIQEWGPFDLVIGGSPCNDLSI 526


>gi|66472506|ref|NP_001018312.1| DNA methyltransferase [Danio rerio]
 gi|62433267|dbj|BAD95481.1| DNA methyltransferase [Danio rerio]
          Length = 1433

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            +++  LF GI  G +    L  +       +E + +SEI   S+          + +  D
Sbjct: 1155 IRVLSLFDGIATGYLVLKDLGFK-------LERYIASEICEDSIAVGMVKHEGKIEYVKD 1207

Query: 56   IAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
            +  I  + + +    D+L+ G PC   S 
Sbjct: 1208 VRTITRKHLAEWGPFDLLIGGSPCNDLSM 1236


>gi|320037564|gb|EFW19501.1| conserved hypothetical protein [Coccidioides posadasii str.
          Silveira]
          Length = 242

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 41 KTYQANFPNTLIFGDIAKI------KTQDIPDHDVLLAGFPCQPFSQA 82
          +TY+ NF  T   G+I ++       ++DI   D+L    PCQ FS A
Sbjct: 2  ETYRLNF--TSAVGEICEVALFLTNDSEDI-IVDILHFSPPCQTFSSA 46


>gi|296224354|ref|XP_002758031.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A-like [Callithrix
           jacchus]
          Length = 723

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 445 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 500

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 501 VTQKHIQEWGPFDLVIGGSPCNDLSI 526


>gi|40226497|gb|AAH23612.1| DNMT3A protein [Homo sapiens]
          Length = 351

 Score = 42.4 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 73  IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 128

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 129 VTQKHIQEWGPFDLVIGGSPCNDLSI 154


>gi|77176455|ref|NP_715640.2| DNA (cytosine-5)-methyltransferase 3A isoform b [Homo sapiens]
 gi|114576490|ref|XP_001148731.1| PREDICTED: DNA (cytosine-5)-methyltransferase 3A isoform 5 [Pan
           troglodytes]
          Length = 723

 Score = 42.4 bits (100), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 445 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 500

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 501 VTQKHIQEWGPFDLVIGGSPCNDLSI 526


>gi|169153891|emb|CAQ14785.1| DNA (cytosine-5-)-methyltransferase 7 [Danio rerio]
 gi|169158982|emb|CAQ13240.1| DNA (cytosine-5-)-methyltransferase 7 [Danio rerio]
          Length = 1433

 Score = 42.1 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 2    LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
            +++  LF GI  G +    L  +       +E + +SEI   S+          + +  D
Sbjct: 1155 IRVLSLFDGIATGYLVLKDLGFK-------LERYIASEICEDSIAVGMVKHEGKIEYVKD 1207

Query: 56   IAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
            +  I  + + +    D+L+ G PC   S 
Sbjct: 1208 VRTITRKHLAEWGPFDLLIGGSPCNDLSM 1236


>gi|260904526|ref|ZP_05912848.1| DNA-cytosine methyltransferase [Brevibacterium linens BL2]
          Length = 319

 Score = 42.1 bits (99), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 63 DIPDHDVLLAGFPCQPFSQAG 83
          + P  DV+L G PCQ FS+ G
Sbjct: 5  ETPSADVILGGPPCQGFSKLG 25


>gi|307544701|ref|YP_003897180.1| C-5 cytosine-specific DNA methylase [Halomonas elongata DSM 2581]
 gi|307216725|emb|CBV41995.1| C-5 cytosine-specific DNA methylase [Halomonas elongata DSM 2581]
          Length = 523

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
          + D F G GG    +EQ           +   +P ++  + AN P+      D+  +   
Sbjct: 12 VVDNFAGGGGASEGIEQALGRP---VDLAINHDPTAIAVHTANHPDAEHSVADVWDVDPA 68

Query: 63 D 63
          +
Sbjct: 69 E 69


>gi|186686861|ref|YP_001870054.1| C-5 cytosine-specific DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186469213|gb|ACC85013.1| C-5 cytosine-specific DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 471

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 22/92 (23%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPY------SVK-TYQANFPNTLIFGDIAKI 59
           LF G GGI    E    +  +    + E +P       ++   +  NF        I ++
Sbjct: 144 LFAGGGGI----EAGMVNSGIRPVIAVEFDPTKPDLSRAIALNHHHNFSEYGCR--IVQL 197

Query: 60  KTQDI---------PDHDVLLAGFPCQPFSQA 82
             Q++            D L A   C  FSQA
Sbjct: 198 TVQEVARLGFIGFPRRPDYLHASPVCANFSQA 229


>gi|237717607|ref|ZP_04548088.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Bacteroides sp. 2_2_4]
 gi|229453111|gb|EEO58902.1| LOW QUALITY PROTEIN: site-specific DNA-methyltransferase
          [Bacteroides sp. 2_2_4]
          Length = 315

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/18 (66%), Positives = 13/18 (72%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
            +VL  GFPCQPFS AG
Sbjct: 3  KINVLTGGFPCQPFSVAG 20


>gi|51556265|ref|NP_001003957.1| DNA (cytosine-5)-methyltransferase 3A isoform 2 [Rattus norvegicus]
 gi|50539391|tpe|CAE52318.1| TPA: putative DNA (cytosine-5) methyltransferase 3a2 [Rattus
           norvegicus]
          Length = 689

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 411 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 466

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 467 VTQKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|148222543|ref|NP_001090906.1| DNA (cytosine-5)-methyltransferase 3A [Sus scrofa]
 gi|110559302|gb|ABG75907.1| DNA methyltransferase 3a2 [Sus scrofa]
          Length = 689

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 411 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 466

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 467 VTQKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|23954438|gb|AAN40037.1|AF480163_1 DNA cytosine methyltransferase 3A2 [Homo sapiens]
          Length = 689

 Score = 42.1 bits (99), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 411 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 466

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 467 VTQKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|212223821|ref|YP_002307057.1| Met-10+ like protein [Thermococcus onnurineus NA1]
 gi|212008778|gb|ACJ16160.1| Met-10+ like protein [Thermococcus onnurineus NA1]
          Length = 331

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PN-TLIFGDIA 57
           + D+F G+G   + L +       +  F+ +INP++V+  + N      PN   I GD+ 
Sbjct: 185 VFDMFAGVGPYSILLAK-----KAKLVFACDINPWAVRYLEENRKLNKMPNVVPILGDVR 239

Query: 58  KI 59
           KI
Sbjct: 240 KI 241


>gi|57640432|ref|YP_182910.1| Met-10+ like protein [Thermococcus kodakarensis KOD1]
 gi|57158756|dbj|BAD84686.1| Met-10+ like protein [Thermococcus kodakarensis KOD1]
          Length = 331

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNT-LIFGDIA 57
           + D+F G+G   + L +       +  F+ +INP++V+  + N      PN   I GD+ 
Sbjct: 185 VFDMFAGVGPYSILLAK-----KAKLVFACDINPWAVRYLEENKKLNKTPNVIPILGDVR 239

Query: 58  KIKTQ 62
           K+  Q
Sbjct: 240 KVAGQ 244


>gi|237703954|ref|ZP_04534435.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226901866|gb|EEH88125.1| DNA-cytosine methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 367

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 36 NPYSVKTYQAN------FPNTLIFGDIAKIKTQDIP--------DHDVLLAGFPCQPFS 80
          +  +  TY+ N          L+  DI  +  + +         + D++L G PCQ FS
Sbjct: 1  DSAAANTYRKNMLERLEHKTELLQEDILLVGPKKLRKKIKLKKGELDMILGGPPCQGFS 59


>gi|114576494|ref|XP_001148525.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           isoform 2 [Pan troglodytes]
          Length = 594

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 316 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 371

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 372 VTQKHIQEWGPFDLVIGGSPCNDLSI 397


>gi|24371231|ref|NP_714965.1| DNA (cytosine-5)-methyltransferase 3A isoform 2 [Mus musculus]
 gi|23954440|gb|AAN40038.1|AF480164_1 DNA cytosine methyltransferase 3A2 [Mus musculus]
 gi|74180540|dbj|BAE34200.1| unnamed protein product [Mus musculus]
 gi|148669441|gb|EDL01388.1| DNA methyltransferase 3A, isoform CRA_b [Mus musculus]
          Length = 689

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 411 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 466

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 467 VTQKHIQEWGPFDLVIGGSPCNDLSI 492


>gi|187477779|ref|YP_785803.1| phage methyltransferase [Bordetella avium 197N]
 gi|115422365|emb|CAJ48890.1| putative phage methyltransferase [Bordetella avium 197N]
          Length = 344

 Score = 42.1 bits (99), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+PY+ +  +         P  +    I  +   D+                    
Sbjct: 7  YYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLRGYTQAHWFAGIGVWSLALR 66

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 67 RAGWPDDRPVWTGSCPCQPFSAAG 90


>gi|330933137|ref|XP_003304061.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
 gi|311319572|gb|EFQ87831.1| hypothetical protein PTT_16483 [Pyrenophora teres f. teres 0-1]
          Length = 2131

 Score = 42.1 bits (99), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 31  FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ-------------DIP-DHDVLLAGFPC 76
           FS+EI  +     + NF   ++F D+     +             +IP D D+L+AGF C
Sbjct: 259 FSAEIEVFKQAFIERNFRPKILFRDVRDFIRESSTKATTAYGAEVEIPTDIDILIAGFVC 318

Query: 77  QPFSQ 81
           +  S+
Sbjct: 319 RDLSR 323


>gi|114576492|ref|XP_001148587.1| PREDICTED: similar to DNA cytosine methyltransferase 3 alpha
           isoform 3 [Pan troglodytes]
          Length = 598

 Score = 42.1 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 320 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 375

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 376 VTQKHIQEWGPFDLVIGGSPCNDLSI 401


>gi|255941182|ref|XP_002561360.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585983|emb|CAP93720.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2162

 Score = 42.1 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 31  FSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQP 78
           FS EI P+  ++Y + NF   L+F DI ++   +          IP D D+L+AG  C  
Sbjct: 203 FSCEIVPF-KQSYIERNFRPPLLFRDITELGGDEARTAYGSSEVIPGDLDILVAGTACVD 261

Query: 79  FS 80
           FS
Sbjct: 262 FS 263


>gi|189424829|ref|YP_001952006.1| methyltransferase [Geobacter lovleyi SZ]
 gi|189421088|gb|ACD95486.1| methyltransferase [Geobacter lovleyi SZ]
          Length = 189

 Score = 42.1 bits (99), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +++ DLF G G   L +E     R  E     E + +++++ + N  +T  F D A++  
Sbjct: 45  MRVLDLFAGSG--SLGIEAL--SRGAEQVTFIEKDRHALESLRLNLGHTG-FSDRAEVLP 99

Query: 62  QD 63
            D
Sbjct: 100 FD 101


>gi|149030964|gb|EDL85991.1| rCG37512 [Rattus norvegicus]
          Length = 461

 Score = 42.1 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--NPYSVKTYQANFPNTLIFGDIAKI 59
           +++  LF GI    L L+       VE + +SE+  +  +V T +          DI  I
Sbjct: 246 IRVLSLFDGIATGYLVLKDLGIK--VEKYVASEVCADSIAVGTIKHE-GQIKYVDDIQNI 302

Query: 60  KTQDIPD---HDVLLAGFPCQPFS 80
             + I +    D+++ G PC   S
Sbjct: 303 AKEHIDEWGPFDLVIGGSPCNDLS 326


>gi|326775658|ref|ZP_08234923.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326655991|gb|EGE40837.1| C-5 cytosine-specific DNA methylase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 470

 Score = 42.1 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI-FGDIAKIKTQDI 64
          D F G GG      Q            +     +V  +QAN P+T     DI+++  +  
Sbjct: 15 DGFAGAGGSSEGARQAGVTVRT---ALNHW-RLAVDVHQANHPDTAHDCADISQVDPRRY 70

Query: 65 PDHDVLLAGFPCQPFSQA 82
                     C   S A
Sbjct: 71 ATTTFAWFSPSCTNHSIA 88


>gi|254494408|ref|ZP_05107579.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae 1291]
 gi|268599718|ref|ZP_06133885.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae MS11]
 gi|226513448|gb|EEH62793.1| LOW QUALITY PROTEIN: DNA (cytosine-5-)-methyltransferase
          [Neisseria gonorrhoeae 1291]
 gi|268583849|gb|EEZ48525.1| LOW QUALITY PROTEIN: modification methylase [Neisseria
          gonorrhoeae MS11]
          Length = 201

 Score = 42.1 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 34 EINPYSVKTYQANFPNTLIFGDIAKIKTQDIP--------DHD-VLLAGFPCQPFSQ 81
          +      +TY+AN     I  DI +++ + +         D D +L+   PCQ +S 
Sbjct: 7  DYELSCKETYEANINAKFIQADIFELQPETLEKELGLKKNDDDLILIGCSPCQYWSV 63


>gi|330900173|gb|EGH31592.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 471

 Score = 41.7 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNT--LIFG 54
           +  LF G G     I   L ++     V      E + Y   + + N   + +T   I  
Sbjct: 136 VCSLFHGGGVLDRAIHAGLARSGIDTFVRIGIEVE-DQYLDASLRNNPMLWRDTSFAICA 194

Query: 55  DIAKI-KTQDIPDHDVLLAGFPCQPFSQAG 83
           D+  + +    P+ D+++AG PC   S+AG
Sbjct: 195 DVRDVQRGTGTPECDLVVAGIPCTGASRAG 224


>gi|330880135|gb|EGH14284.1| modification methylase (cytosine-specific methyltransferase)
          [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 529

 Score = 41.7 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44
          ++I DLF G GG+        +    +   S+E++P +  T +
Sbjct: 7  IQIVDLFAGPGGLGEGFSSFLDGSRFKIIVSAEMDPVAHSTLR 49



 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69  VLLAGFPCQPFSQAG 83
           VL+ G PCQ +S AG
Sbjct: 124 VLIGGPPCQAYSLAG 138


>gi|257486963|ref|ZP_05641004.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 271

 Score = 41.7 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNT--LIFG 54
           +  LF G G     I   L ++     V      E + Y   + + N   + +T   I  
Sbjct: 135 VCSLFHGGGVLDRAIHAGLARSGIDTFVRIGIEVE-DQYLDASLRNNPMLWRDTSFAICA 193

Query: 55  DIAKI-KTQDIPDHDVLLAGFPCQPFSQAG 83
           D+  + +    P+ D+++AG PC   S+AG
Sbjct: 194 DVRDVQRGTGTPECDLVVAGIPCTGASRAG 223


>gi|66044681|ref|YP_234522.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255388|gb|AAY36484.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 471

 Score = 41.7 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 4   ITDLFCGIG----GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNT--LIFG 54
           +  LF G G     I   L ++     V      E + Y   + + N   + +T   I  
Sbjct: 136 VCSLFHGGGVLDRAIHAGLARSGIDTFVRIGIEVE-DQYLDASLRNNPMLWRDTSFAICA 194

Query: 55  DIAKI-KTQDIPDHDVLLAGFPCQPFSQAG 83
           D+  + +    P+ D+++AG PC   S+AG
Sbjct: 195 DVRDVQRGTGTPECDLVVAGIPCTGASRAG 224


>gi|30387420|ref|NP_848249.1| cytosine methylase [Enterobacteria phage epsilon15]
 gi|30266075|gb|AAO06104.1| cytosine methylase [Salmonella phage epsilon15]
          Length = 389

 Score = 41.7 bits (98), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 31/88 (35%)

Query: 27 VECFFSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP--------------- 65
          ++  + +EI+ ++ +  +         P  +    I  +   D+                
Sbjct: 2  IQAAYYNEIDQFAAQWLRNLIAGGHIAPGEVDERSIEDVTPDDLRGFTQCHFFAGIGVWS 61

Query: 66 ----------DHDVLLAGFPCQPFSQAG 83
                    D  V     PCQPFS AG
Sbjct: 62 HSLRLAGWPDDKTVWTGSCPCQPFSAAG 89


>gi|297668050|ref|XP_002812266.1| PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase
           3A-like [Pongo abelii]
          Length = 696

 Score = 41.7 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
           +++  LF GI      L        ++   + +SE+   S+          +++ GD+  
Sbjct: 418 IRVLSLFDGI---ATGL-LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRS 473

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 474 VTQKHIQEWGPFDLVIGGSPCNDLSI 499


>gi|297563371|ref|YP_003682345.1| hypothetical protein Ndas_4450 [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
 gi|296847819|gb|ADH69839.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111]
          Length = 211

 Score = 41.7 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DL+ G GG  +     ++    +     +I+      +Q N+P      D  +  T+
Sbjct: 6  RLLDLYSGAGGAAMG----YHLAGFDVVG-VDIH------HQPNYPFEHHVADALEYVTE 54

Query: 63 DIPDHDVLLAGFPCQPF 79
             + D L     CQ F
Sbjct: 55 HGHEFDALHGSPTCQTF 71


>gi|282896697|ref|ZP_06304705.1| Res [Raphidiopsis brookii D9]
 gi|281198415|gb|EFA73303.1| Res [Raphidiopsis brookii D9]
          Length = 244

 Score = 41.7 bits (98), Expect = 0.032,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFN 23
           +++  DLF G GG+ L  +    
Sbjct: 168 IMRTVDLFSGCGGLSLGFQNVGK 190


>gi|127800251|gb|AAH79303.2| Trmt12 protein [Rattus norvegicus]
          Length = 437

 Score = 41.7 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 228 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHFGDN 284

Query: 57  AKIKTQDIPD 66
            K+K  +  D
Sbjct: 285 RKLKLSNTAD 294


>gi|171916113|ref|NP_001116448.1| tRNA wybutosine-synthesizing protein 2 homolog [Rattus norvegicus]
 gi|143679922|sp|Q4V8B8|TYW2_RAT RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|127800077|gb|AAH97456.2| Trmt12 protein [Rattus norvegicus]
 gi|149066341|gb|EDM16214.1| rCG59483 [Rattus norvegicus]
          Length = 437

 Score = 41.7 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           + DL+ GIG   L       H       + E NP++V   + N           + FGD 
Sbjct: 228 LVDLYAGIGYFTLPF---LVHAGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHFGDN 284

Query: 57  AKIKTQDIPD 66
            K+K  +  D
Sbjct: 285 RKLKLSNTAD 294


>gi|14591212|ref|NP_143288.1| hypothetical protein PH1416 [Pyrococcus horikoshii OT3]
 gi|3257839|dbj|BAA30522.1| 330aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 330

 Score = 41.7 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIA 57
           + D+F G+G   + L +          F+ +INP+++K  + N           I  D+ 
Sbjct: 186 VFDMFAGVGPFSILLAK-----KARMVFACDINPWAIKYLEENIKLNKVKNIIPILSDVT 240

Query: 58  KI 59
           K+
Sbjct: 241 KV 242


>gi|327303100|ref|XP_003236242.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
 gi|326461584|gb|EGD87037.1| hypothetical protein TERG_03291 [Trichophyton rubrum CBS 118892]
          Length = 2122

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 170 LFSAEIDAF-KQSYIQRNFSPEIIFRDVNELVAEEATTAFGSVKKVPTDPDLLVVGFSCV 228

Query: 78  PFS 80
            FS
Sbjct: 229 DFS 231


>gi|315050244|ref|XP_003174496.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
 gi|311339811|gb|EFQ99013.1| DNA repair protein rad8 [Arthroderma gypseum CBS 118893]
          Length = 2118

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 167 LFSAEIDAF-KQSYIQRNFSPEIIFRDVNELVAEEATTAFGSVRRVPTDPDLLVVGFSCV 225

Query: 78  PFS 80
            FS
Sbjct: 226 DFS 228


>gi|295397699|ref|ZP_06807772.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294974068|gb|EFG49822.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 469

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +K+ DLFCGIG   L L         +E   +S IN         N  NT      A+  
Sbjct: 320 MKVLDLFCGIGTFSLPLAAASKSLAGIEIVENS-INSAKRNAADNNLDNTFFMASDARAG 378

Query: 61  TQDIPDH----DVLLAGFP 75
            + +PD     D+LL   P
Sbjct: 379 LRVLPDVWGQPDLLLLDPP 397


>gi|302665555|ref|XP_003024387.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
 gi|291188439|gb|EFE43776.1| SNF2 family helicase, putative [Trichophyton verrucosum HKI 0517]
          Length = 2047

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 96  LFSAEIDAF-KQSYIQRNFSPEIIFRDVNELVAEEATTAFGSVKKVPTDPDLLVVGFSCV 154

Query: 78  PFS 80
            FS
Sbjct: 155 DFS 157


>gi|302509586|ref|XP_003016753.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
 gi|291180323|gb|EFE36108.1| SNF2 family helicase, putative [Arthroderma benhamiae CBS 112371]
          Length = 2114

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 170 LFSAEIDAF-KQSYIQRNFSPEIIFRDVNELVAEEATTAFGSVKKVPTDPDLLVVGFSCV 228

Query: 78  PFS 80
            FS
Sbjct: 229 DFS 231


>gi|219882789|ref|YP_002477953.1| C-5 cytosine-specific DNA methylase [Arthrobacter
          chlorophenolicus A6]
 gi|219861795|gb|ACL42136.1| C-5 cytosine-specific DNA methylase [Arthrobacter
          chlorophenolicus A6]
          Length = 316

 Score = 41.7 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 35/96 (36%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF---------------- 47
          I DLF G GG     E               I+P         F                
Sbjct: 9  ILDLFAGPGGWDRGAELAG------------IDP-------KRFVGIELDAAAVQTARAA 49

Query: 48 PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
              + G++  +K  D P    L+A  PC  FS +G
Sbjct: 50 GYNRVHGNVLDVKPSDYPRVKGLIASAPCPTFSSSG 85


>gi|319777547|ref|YP_004137198.1| cytosine-specific methyltransferase [Mycoplasma fermentans M64]
 gi|318038622|gb|ADV34821.1| Cytosine-specific methyltransferase [Mycoplasma fermentans M64]
          Length = 416

 Score = 41.7 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 34/144 (23%), Gaps = 63/144 (43%)

Query: 2   LKITDLFCGIGGIRLD---LEQTFNHRNVECFFSSEINPYSVKTYQANFP---------- 48
           ++I + F GIG        L +     N E   + + +  +   Y A             
Sbjct: 4   IRIFETFSGIGAQHKAITWLNKKQKEVNFEIVATCDWDIQATIAYAAIHHNLDETKIEKI 63

Query: 49  -NTLIFGDIAKIKT---------------------------------------QDIPD-- 66
            N+    D  KI                                          DI    
Sbjct: 64  LNSNKLEDETKINEYLKSRTFSMTSKKAISSLKNKSYELKKALVAANLISNNFNDITKIT 123

Query: 67  --------HDVLLAGFPCQPFSQA 82
                    D++   FPCQ  S A
Sbjct: 124 KEQLDQLHFDLITYSFPCQGLSSA 147


>gi|124512074|ref|XP_001349170.1| modification methylase-like protein, putative [Plasmodium
          falciparum 3D7]
 gi|23498938|emb|CAD51016.1| modification methylase-like protein, putative [Plasmodium
          falciparum 3D7]
          Length = 706

 Score = 41.7 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ---ANF 47
          +K+ +L+CGIGG+   L Q FN+       +++I      TY+    N 
Sbjct: 4  IKVLELYCGIGGLHYSLLQAFNNF----VHANKITEKKCDTYKDGIHNH 48


>gi|328708014|ref|XP_003243571.1| PREDICTED: hypothetical protein LOC100573483 isoform 1
           [Acyrthosiphon pisum]
          Length = 445

 Score = 41.7 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D FCG GG  + L +T          + +I+P  ++  + N            + GDI
Sbjct: 290 VLDPFCGAGGNIIQLAKTCKR-----VLACDIDPNKIRLARHNAEIYGVAHKIDFVVGDI 344

Query: 57  AKIKTQDIPDHDVLLAGFP 75
            +I  +     DV+    P
Sbjct: 345 FQIYPK--LRADVVFMSPP 361


>gi|302790193|ref|XP_002976864.1| hypothetical protein SELMODRAFT_105763 [Selaginella moellendorffii]
 gi|300155342|gb|EFJ21974.1| hypothetical protein SELMODRAFT_105763 [Selaginella moellendorffii]
          Length = 230

 Score = 41.7 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L           +  ++ E NP+++   + N
Sbjct: 105 IVDLFAGIGYFVLPF---LVRARAKHVYACEWNPHALYALRRN 144


>gi|302797651|ref|XP_002980586.1| hypothetical protein SELMODRAFT_153963 [Selaginella moellendorffii]
 gi|300151592|gb|EFJ18237.1| hypothetical protein SELMODRAFT_153963 [Selaginella moellendorffii]
          Length = 338

 Score = 41.7 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLF GIG   L           +  ++ E NP+++   + N
Sbjct: 179 IVDLFAGIGYFVLPF---LVRARAKHVYACEWNPHALYALRRN 218


>gi|120610363|ref|YP_970041.1| C-5 cytosine-specific DNA methylase [Acidovorax citrulli AAC00-1]
 gi|120588827|gb|ABM32267.1| C-5 cytosine-specific DNA methylase [Acidovorax citrulli AAC00-1]
          Length = 710

 Score = 41.7 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNT-LIFGDIAK 58
          I D F G GG    LE  F           +I    +P ++  +  N P+T  +   + +
Sbjct: 17 IIDNFAGGGGTSTGLEAAFGRP-------VDIAINHDPEALAMHAINHPHTQHLCESVWE 69

Query: 59 IKTQDIP---DHDVLLAGFPCQPFSQA 82
          +    +       ++     C+ FS+A
Sbjct: 70 VDPIAVTGNQPVGLVWLSPDCKHFSKA 96


>gi|54025917|ref|YP_120159.1| hypothetical protein nfa39470 [Nocardia farcinica IFM 10152]
 gi|54017425|dbj|BAD58795.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 275

 Score = 41.7 bits (98), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 11/81 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRN-------VECFFSSEINPYSVKTYQANFPN-TLIFG 54
           +  DL  GIG +       F HR          C    E NP  V+  +   P  T I G
Sbjct: 71  RFIDLGAGIGRLSHGCRNLFGHRWAGDPEREFVCV---ERNPDYVRVGRKILPEATWICG 127

Query: 55  DIAKIKTQDIPDHDVLLAGFP 75
           DI  +    +   DV +   P
Sbjct: 128 DILDVPDMGLGRFDVAIGNPP 148


>gi|318064338|gb|ADV36400.1| phage methyltransferase [Edwardsiella phage eiAU]
          Length = 295

 Score = 41.7 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+PY+ +  +         P  +    I  I   ++ +                  
Sbjct: 4  YYNEIDPYAAQWLRNLIAEGHIAPGIVDERSIEDITPNELTEFTQCHFFAGIGVWSLALR 63

Query: 68 ------D--VLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 64 RAGWPDDRPVWTGSCPCQPFSAAG 87


>gi|47229157|emb|CAG03909.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 628

 Score = 41.3 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 2   LKITDLFCGI--GGI---RLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GD 55
           +++  LF GI  G +    L          +E + +SEI   S+          + +  D
Sbjct: 314 IRVLSLFDGIATGYLVLRDLGFR-------IERYIASEICEDSIAVGMVKHEGKIEYVND 366

Query: 56  IAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  +  + + +    D+L+ G PC   S 
Sbjct: 367 VRTVTKKHLAEWGPFDLLIGGSPCNDLSM 395


>gi|299753284|ref|XP_001833175.2| hypothetical protein CC1G_01237 [Coprinopsis cinerea okayama7#130]
 gi|298410229|gb|EAU88864.2| hypothetical protein CC1G_01237 [Coprinopsis cinerea okayama7#130]
          Length = 1253

 Score = 41.3 bits (97), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 28/84 (33%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIFGDIAK---------------IKTQDI------- 64
           VE  +  E +  +  TY  N P   ++                    +  + +       
Sbjct: 763 VETRYVIEFSDSAAFTYHKNHPKAKVYCQDTNLLLKQAVEEDSGKAYVPLESLCSQLECP 822

Query: 65  ------PDHDVLLAGFPCQPFSQA 82
                  + D +L G PCQ FS+A
Sbjct: 823 KMPSRQENIDFILGGPPCQGFSRA 846


>gi|328708016|ref|XP_003243572.1| PREDICTED: hypothetical protein LOC100573483 isoform 2
           [Acyrthosiphon pisum]
          Length = 407

 Score = 41.3 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D FCG GG  + L +T          + +I+P  ++  + N            + GDI
Sbjct: 252 VLDPFCGAGGNIIQLAKTCKR-----VLACDIDPNKIRLARHNAEIYGVAHKIDFVVGDI 306

Query: 57  AKIKTQDIPDHDVLLAGFP 75
            +I  +     DV+    P
Sbjct: 307 FQIYPK--LRADVVFMSPP 323


>gi|223997022|ref|XP_002288184.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975292|gb|EED93620.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2271

 Score = 41.3 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 17  DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIPD 66
            L   F H +    FS EI PY       NF +++++ DI K+          + + +P+
Sbjct: 487 GLGHLFKHDH---VFSCEIEPYKQAYLARNF-DSVLYPDIVKLCDEPPRDVYGQEKPLPE 542

Query: 67  HDVLLAGFPCQPFSQ 81
            ++ +AG  C+ FS 
Sbjct: 543 FNMFVAGTSCKNFSM 557


>gi|300781317|ref|ZP_07091171.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533024|gb|EFK54085.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 195

 Score = 41.3 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           ++ DLF G G   L LE     R  +     E +P +V+  + N      PN      I 
Sbjct: 46  RVLDLFSGSG--ALGLEAA--SRGADEVVLVESDPKAVEIIKHNAQAVGHPNVH----IE 97

Query: 58  KIKTQD-IPD-----HDVLLAGFP 75
            +K    +P       D++LA  P
Sbjct: 98  PVKASAYVPRAPRAYFDMVLADPP 121


>gi|170024546|ref|YP_001721051.1| C-5 cytosine-specific DNA methylase [Yersinia pseudotuberculosis
          YPIII]
 gi|169751080|gb|ACA68598.1| C-5 cytosine-specific DNA methylase [Yersinia pseudotuberculosis
          YPIII]
          Length = 287

 Score = 41.3 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDHD---------------- 68
          + +EI+PY+ +  +         P  +    I  +K +D+ +                  
Sbjct: 6  YYNEIDPYAAQWLRNLIKAGHINPGYVDERSIVDVKPEDLTEFTQCHFFAGIGVWSYALR 65

Query: 69 ---------VLLAGFPCQPFSQAG 83
                   V     PCQPFS AG
Sbjct: 66 RAGWPDDEPVWTGSCPCQPFSAAG 89


>gi|326789842|ref|YP_004307663.1| C-5 cytosine-specific DNA methylase [Clostridium lentocellum DSM
          5427]
 gi|326540606|gb|ADZ82465.1| C-5 cytosine-specific DNA methylase [Clostridium lentocellum DSM
          5427]
          Length = 506

 Score = 41.3 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------DIA 57
          I D F G GG    +E                +  ++  ++ N P+T  +       DI 
Sbjct: 4  IVDNFAGGGGASTGIELATGRSPDIAINH---DEAAILMHKTNHPSTKHYQESVWDIDIK 60

Query: 58 KIKTQDIPDHDVLLAGFPCQPFSQA 82
          K+        D+      C+ FS+A
Sbjct: 61 KVTAGQ--QVDLAWFSPDCKHFSKA 83


>gi|51596134|ref|YP_070325.1| modification methylase [Yersinia pseudotuberculosis IP 32953]
 gi|51589416|emb|CAH21038.1| putative modification methylase [Yersinia pseudotuberculosis IP
          32953]
          Length = 581

 Score = 41.3 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 17/91 (18%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG- 54
          +K  I D F G GG    +E            S +I    +P ++  +  N P+TL +  
Sbjct: 1  MKEIIVDNFAGGGGASTGIEMATGR-------SVDIAINHDPNAIAMHTTNHPDTLHYCE 53

Query: 55 ---DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
             DI  +         +      C+ FS+A
Sbjct: 54 SVFDIDPVAATAGRPVGLAWFSPDCRHFSKA 84


>gi|167841732|ref|ZP_02468416.1| putative cytosine-specific modification methylase [Burkholderia
          thailandensis MSMB43]
          Length = 587

 Score = 41.3 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    LE+ F         +   +  ++  + AN P T  + + +  +   
Sbjct: 17 IIDNFAGGGGASTGLERAFGRP---VDVAINHDREALAMHAANHPQTAHYCESVFDVDPV 73

Query: 63 DIP---DHDVLLAGFPCQPFSQA 82
           I       ++     C+ FS+A
Sbjct: 74 AITGNQPVGLVWLSPDCKHFSKA 96


>gi|308183509|ref|YP_003927636.1| DNA-cytosine methyltransferase [Helicobacter pylori PeCan4]
 gi|308065694|gb|ADO07586.1| DNA-cytosine methyltransferase [Helicobacter pylori PeCan4]
          Length = 238

 Score = 41.3 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 68 DVLLAGFPCQPFSQAG 83
          D++L GFPCQ FS AG
Sbjct: 4  DIVLGGFPCQDFSFAG 19


>gi|302687500|ref|XP_003033430.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
 gi|300107124|gb|EFI98527.1| hypothetical protein SCHCODRAFT_15473 [Schizophyllum commune H4-8]
          Length = 2254

 Score = 41.3 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 26  NVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGF 74
            VE  FS EI P+     + NF   L+F D+ ++   +          +P D D+L+AG 
Sbjct: 215 GVEHVFSCEIEPFKQGYIERNFMPPLLFRDVCELGDAEAHTAFGALAPVPGDVDLLVAGT 274

Query: 75  PCQPFS 80
            C  FS
Sbjct: 275 SCVDFS 280


>gi|255079758|ref|XP_002503459.1| DNA methyltransferase [Micromonas sp. RCC299]
 gi|226518726|gb|ACO64717.1| DNA methyltransferase [Micromonas sp. RCC299]
          Length = 173

 Score = 41.3 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 48 PNTLIFGDIAKIKTQDIP---DHDVLLAGFPCQPFSQAG 83
          P   I+ D+  +   DIP     D++ AGFPC   S  G
Sbjct: 7  PTAPIWDDVRTLTAWDIPGSSPIDIIAAGFPCPDVSDLG 45


>gi|120610423|ref|YP_970101.1| C-5 cytosine-specific DNA methylase [Acidovorax citrulli AAC00-1]
 gi|120588887|gb|ABM32327.1| C-5 cytosine-specific DNA methylase [Acidovorax citrulli AAC00-1]
          Length = 669

 Score = 41.3 bits (97), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNT-LIFGDIAK 58
          I D F G GG    LE  F           +I    +P ++  +  N P+T  +   +  
Sbjct: 17 IIDNFAGGGGTSTGLEAAFGRP-------VDIAINHDPEALAMHAINHPHTQHLCESVWD 69

Query: 59 IKTQDIP---DHDVLLAGFPCQPFSQA 82
          +    +       ++     C+ FS+A
Sbjct: 70 VDPIAVTGNQPVGLVWLSPDCKHFSKA 96


>gi|227832990|ref|YP_002834697.1| putative DNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182522|ref|ZP_06041943.1| putative DNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454006|gb|ACP32759.1| putative DNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 200

 Score = 41.3 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          ++ DLF G G   L LE     R  E     E N  +VK  + N  
Sbjct: 46 RVLDLFAGSG--ALGLEAA--SRGAEEVVLVENNAAAVKVIRHNIG 87


>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
          Length = 558

 Score = 41.3 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECF-FSSEINPYSVKTYQANFPN--TLIFGDIAK 58
           + DLFCG G  G+ L   +  +    E    + E    + K  + N  N  T + GD+ K
Sbjct: 407 VLDLFCGTGTIGLTLA-RRAKHIYGYEVVPEAIE---DARKNAKLNGINNATFVQGDLNK 462

Query: 59  IKT---QDIPDHDVLL 71
           I     ++ P  D+++
Sbjct: 463 INESFGKEFPKPDIII 478


>gi|331245308|ref|XP_003335291.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309314281|gb|EFP90872.1| hypothetical protein PGTG_17071 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 2163

 Score = 41.3 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 22  FNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD--------IP---DHDVL 70
                V+  FS EI P+     + NF   ++F D+ ++   +        +P   D D+L
Sbjct: 237 GKDFRVQHVFSCEIEPFKQAYIERNFQPPILFRDVCELGEDEATTAYGAKVPVPTDVDML 296

Query: 71  LAGFPCQPFS 80
           +AG  C  +S
Sbjct: 297 VAGTSCVDYS 306


>gi|186476672|ref|YP_001858142.1| C-5 cytosine-specific DNA methylase [Burkholderia phymatum
          STM815]
 gi|184193131|gb|ACC71096.1| C-5 cytosine-specific DNA methylase [Burkholderia phymatum
          STM815]
          Length = 535

 Score = 41.3 bits (97), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    LE+ F         +   +P ++  + AN P+T  + + +  +   
Sbjct: 17 IIDNFAGGGGASTGLERAFGRP---VDVAINHDPEAIAMHTANHPHTAHYCESVFGVDPI 73

Query: 63 DI----PDHDVLLAGFPCQPFSQA 82
           +    P   ++     C+ FS+A
Sbjct: 74 AVTRNQPAA-LVWLSPDCKHFSKA 96


>gi|162458589|ref|NP_001105094.1| DNA methyl transferase 106 [Zea mays]
 gi|22135461|gb|AAM93211.1|AF527610_1 DNA methyltransferase DMT106 [Zea mays]
 gi|223949331|gb|ACN28749.1| unknown [Zea mays]
          Length = 659

 Score = 41.3 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
           +++  ++ GIGG  + L +      ++C  S E +  + K  +  +  T   G       
Sbjct: 538 IRVLSIYSGIGGAEVALHRLG--IPLKCVISVEESEVNRKILRRWWLKTEQTGVLRQHAG 595

Query: 56  IAKIKTQDIPD-------HDVLLAG 73
           I K+KT  I D        D+++ G
Sbjct: 596 IWKLKTHVIEDLVKEFGGFDLIIGG 620


>gi|326479420|gb|EGE03430.1| cytosine-specific DNA methylase [Trichophyton equinum CBS 127.97]
          Length = 2106

 Score = 41.3 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 170 LFSAEIDAF-KQSYIQRNFSPEVIFRDVNELVAEEATTAFGSVKKVPTDPDLLVVGFSCV 228

Query: 78  PFS 80
            FS
Sbjct: 229 DFS 231


>gi|326471326|gb|EGD95335.1| hypothetical protein TESG_02821 [Trichophyton tonsurans CBS 112818]
          Length = 2122

 Score = 41.3 bits (97), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++  ++          +P D D+L+ GF C 
Sbjct: 170 LFSAEIDAF-KQSYIQRNFSPEVIFRDVNELVAEEATTAFGSVKKVPTDPDLLVVGFSCV 228

Query: 78  PFS 80
            FS
Sbjct: 229 DFS 231


>gi|254168567|ref|ZP_04875410.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289595689|ref|YP_003482385.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
 gi|197622401|gb|EDY34973.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289533476|gb|ADD07823.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
          Length = 346

 Score = 41.3 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIA 57
           I DLF GIG   L L ++   +     ++ E NP + +    N           +FGD  
Sbjct: 196 IVDLFAGIGYFTLPLAKSGRAKK---IYACEKNPIAYRYLLENIELNQLENIIPLFGDNR 252

Query: 58  KIKTQDIPDHDVLLAGF 74
            I    I   D ++ G+
Sbjct: 253 NISPLKI--ADRVIMGY 267


>gi|109900394|ref|YP_663649.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109702675|gb|ABG42595.1| DNA-cytosine methyltransferase [Pseudoalteromonas atlantica T6c]
          Length = 535

 Score = 41.3 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 58/137 (42%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVK--TYQANFPNTLIFGDIA 57
           +KI DLF G GG+         + +   +   S E    + +  T +A +     FGD  
Sbjct: 5   IKIIDLFAGPGGLGEGFSAYKENASNPFKIAISIEKETSAHRTLTLRAFY---RQFGDDT 61

Query: 58  ---------------------KIK------------------TQDIPDHDV--------- 69
                                KI+                   +   + DV         
Sbjct: 62  PEEYYQFLRGELGKNPEDQLYKIERFAKQVSAAQKEARCFTLGEHNKEIDVAIAEAIGSD 121

Query: 70  ---LLAGFPCQPFSQAG 83
              L+ G PCQ +S  G
Sbjct: 122 ECMLIGGPPCQAYSLVG 138


>gi|119896645|ref|YP_931858.1| putative methylase [Azoarcus sp. BH72]
 gi|119669058|emb|CAL92971.1| putative methylase [Azoarcus sp. BH72]
          Length = 326

 Score = 41.3 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 31/101 (30%), Gaps = 38/101 (37%)

Query: 1  MLKITDLFCGIGGIR------------LDLEQTFNHRNVECFFSSEINPYSVKTYQANFP 48
          M    DLFCG G               L L+                N  + +TY+ANFP
Sbjct: 1  MPTFVDLFCGAG-FGARGAVRGGGVPLLGLDA--------------WN-LATETYKANFP 44

Query: 49 NTLIFGDIAKIKTQDIPDH-------DVLLAGFPCQPFSQA 82
                 I +     +P         DVLL    C   S A
Sbjct: 45 QADT---ITEKIEDVVPKTLGRKYRPDVLLTSPECTSHSIA 82


>gi|116004541|ref|NP_001070632.1| tRNA wybutosine-synthesizing protein 2 homolog [Danio rerio]
 gi|123905829|sp|Q0P466|TYW2_DANRE RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|112419413|gb|AAI22255.1| Zgc:153361 [Danio rerio]
          Length = 408

 Score = 41.3 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
            + DL+ GIG   L       H N     + E NP +V   Q N          T+  GD
Sbjct: 220 TVVDLYAGIGYFTLPY---LVHANAAHVHACEWNPDAVAALQRNLEINGVSNRCTVHQGD 276

Query: 56  IAKIKTQDIPD 66
             ++   D+ D
Sbjct: 277 NRQLSLSDLAD 287


>gi|258574543|ref|XP_002541453.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901719|gb|EEP76120.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 726

 Score = 41.3 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 13/64 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKI----------KTQDIP-DHDVLLAGFPCQ 77
            FS+EI P+  ++Y Q NF   ++F D++++            + +P + D+L+AGF C 
Sbjct: 176 LFSAEIEPF-KQSYIQRNFSPDILFRDVSELVNNEATTAFGSVRTVPTNPDLLVAGFSCV 234

Query: 78  PFSQ 81
            FSQ
Sbjct: 235 DFSQ 238


>gi|119384793|ref|YP_915849.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
 gi|119374560|gb|ABL70153.1| DNA-cytosine methyltransferase [Paracoccus denitrificans PD1222]
          Length = 511

 Score = 41.3 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 36/135 (26%), Gaps = 57/135 (42%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKT---------YQANFP---- 48
           I DLF G GG+           H       S E    + +T         Y+A       
Sbjct: 7   IVDLFAGPGGLGEGFASLVEDGHAPFRIGISVEKEASAHRTLTLRAFLREYRARHGVLPK 66

Query: 49  ----------------------------------------NTLIFGDIAKIKTQDIPDHD 68
                                                    T I G IA +K +   D  
Sbjct: 67  EFIDFHAGLASEPDWSAVDTEAWQHAIDEARALELGTEAAATAIDGAIATLKAKY--DDT 124

Query: 69  VLLAGFPCQPFSQAG 83
           +++ G PCQ +S  G
Sbjct: 125 IVIGGPPCQAYSLVG 139


>gi|310815193|ref|YP_003963157.1| DNA-cytosine methyltransferase [Ketogulonicigenium vulgare Y25]
 gi|308753928|gb|ADO41857.1| DNA-cytosine methyltransferase [Ketogulonicigenium vulgare Y25]
          Length = 555

 Score = 40.9 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 57/135 (42%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKT---------YQANFP---- 48
           I DLF G GG+           H       S E    + +T         Y+A       
Sbjct: 51  IVDLFAGPGGLGEGFASFVEDGHAPFRIGISVEKEASAHRTLTLRAFLREYRARHGVLPK 110

Query: 49  ----------------------------------------NTLIFGDIAKIKTQDIPDHD 68
                                                    T I G IA +K +   D  
Sbjct: 111 EFIDFHAGLASEPDWSAVDAEAWQHAIDEARALELGTGTAATAIDGAIATLKAKY--DDT 168

Query: 69  VLLAGFPCQPFSQAG 83
           +L+ G PCQ +S  G
Sbjct: 169 ILIGGPPCQAYSLVG 183


>gi|224076026|ref|XP_002304879.1| hypothetical protein POPTRDRAFT_555247 [Populus trichocarpa]
 gi|222842311|gb|EEE79858.1| hypothetical protein POPTRDRAFT_555247 [Populus trichocarpa]
          Length = 363

 Score = 40.9 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
           + DL+ G G +   L       N+   ++ ++N  + ++ + N P T
Sbjct: 306 LLDLYSGCGAMSTGL---CLGLNLVTKWAVDLNINACQSLRLNHPET 349


>gi|67539812|ref|XP_663680.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|40738861|gb|EAA58051.1| hypothetical protein AN6076.2 [Aspergillus nidulans FGSC A4]
 gi|259479739|tpe|CBF70236.1| TPA: SNF2 family helicase, putative (AFU_orthologue; AFUA_2G09120)
           [Aspergillus nidulans FGSC A4]
          Length = 2379

 Score = 40.9 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIPD-HDVLLAGFP 75
            +  FS+EI PY     + NF   L+F D+A++K           + +P   D+L+AGF 
Sbjct: 355 FKHLFSAEIVPYKQAYIERNFRPRLLFRDVAELKDRVARTAYGSLEKVPKNADMLIAGFS 414

Query: 76  CQPFS 80
           C  FS
Sbjct: 415 CVDFS 419


>gi|186895215|ref|YP_001872327.1| C-5 cytosine-specific DNA methylase [Yersinia pseudotuberculosis
          PB1/+]
 gi|186698241|gb|ACC88870.1| C-5 cytosine-specific DNA methylase [Yersinia pseudotuberculosis
          PB1/+]
          Length = 287

 Score = 40.9 bits (96), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDHD---------------- 68
          + +EI+PY+ +  +         P  +    I  +K +D+ +                  
Sbjct: 6  YYNEIDPYAAQWLRNLIKAGHINPGYVDERSIVDVKPEDLTEFTQCHFFAGIGVWSYALR 65

Query: 69 ---------VLLAGFPCQPFSQAG 83
                   V     PCQPFS AG
Sbjct: 66 RAGWPDDEPVWTGSCPCQPFSAAG 89


>gi|307546796|ref|YP_003899275.1| C-5 cytosine-specific DNA methylase [Halomonas elongata DSM 2581]
 gi|307218820|emb|CBV44090.1| C-5 cytosine-specific DNA methylase [Halomonas elongata DSM 2581]
          Length = 682

 Score = 40.9 bits (96), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKT 61
            DLF G GG    LE   N            +  ++  +QAN P    +  D+ ++  
Sbjct: 61  VDLFAGGGGASTGLEMGLNRPVHVAINH---DADAISMHQANHPGADHYLSDVYEVDP 115


>gi|226494722|ref|NP_001143116.1| hypothetical protein LOC100275594 [Zea mays]
 gi|224031061|gb|ACN34606.1| unknown [Zea mays]
          Length = 558

 Score = 40.9 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 4   ITDLFCGIGGIRLDL-EQTFNHRNVECF-FSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
           + DLFCG G I L    +  +    E    + E    + K  + N  N  T + GD+ KI
Sbjct: 407 VLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIE---DARKNAKLNGINNATFVQGDLNKI 463

Query: 60  KT---QDIPDHDVLL 71
                ++ P  D+++
Sbjct: 464 NESFGKEFPKPDIII 478


>gi|260840790|ref|XP_002613805.1| hypothetical protein BRAFLDRAFT_124175 [Branchiostoma floridae]
 gi|229299195|gb|EEN69814.1| hypothetical protein BRAFLDRAFT_124175 [Branchiostoma floridae]
          Length = 1421

 Score = 40.9 bits (96), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
            + DL+ GIG   L          V    + E NP +V+  Q N          T+  GD
Sbjct: 235 TVVDLYAGIGYFTLPFLVHGKAAEVH---ACEWNPAAVEALQKNLQINKVQDRCTVHHGD 291

Query: 56  IAKIKTQDIPD 66
             ++  + + D
Sbjct: 292 NRQVCPRGVAD 302


>gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
 gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
          Length = 725

 Score = 40.9 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           I D FCG+GG  +   +T +H       + +I+P  +K  + N            I GD 
Sbjct: 565 IIDAFCGVGGNCIQFAKTCDH-----VIAIDIDPNKIKCARHNAKIYNVEHKIEFIVGDF 619

Query: 57  AKIKTQDIPDHDVLLAGFP 75
            ++        DV+    P
Sbjct: 620 LQLAPS--LKADVVFLSPP 636


>gi|167574287|ref|ZP_02367161.1| methyltransferase, putative [Burkholderia oklahomensis C6786]
          Length = 426

 Score = 40.9 bits (96), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 31/86 (36%)

Query: 29  CFFSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP----------------- 65
             + +E +P +    +         P  +   DI  +   D+                  
Sbjct: 19  VAYYNEHDPVAAAWLRNLIAAGHIAPGDVDERDIRDVHPDDLRGYAQCHFFAGVGVWSYA 78

Query: 66  --------DHDVLLAGFPCQPFSQAG 83
                   D  V     PCQPFS AG
Sbjct: 79  LRRAGWPDDRPVWTGSCPCQPFSAAG 104


>gi|317179556|dbj|BAJ57344.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori F30]
          Length = 78

 Score = 40.9 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF----PNTLIFGDIA 57
          L    LF G G  R  L         EC  ++EI    +   + N         I GDI 
Sbjct: 7  LTYISLFSGAGVGRYGL----LEEGFECVATNEILEKRLNIQRINRKCKLDENCISGDIK 62

Query: 58 KIKTQD 63
          K +T++
Sbjct: 63 KPETKE 68


>gi|312222342|emb|CBY02282.1| hypothetical protein [Leptosphaeria maculans]
          Length = 2343

 Score = 40.9 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 14  IRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ---------- 62
           I   LE+  N     +  FS+EI P      + NF   ++F D+     +          
Sbjct: 475 ISKALEEAGNPVPRFQHEFSAEIEPVKQGYIERNFQPKILFRDVRDFIPESTTTATTAYG 534

Query: 63  ---DIP-DHDVLLAGFPCQPFSQ 81
              +IP D  + +AGF C+  S+
Sbjct: 535 AEVEIPTDIHIFVAGFVCKDLSR 557


>gi|189192276|ref|XP_001932477.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187974083|gb|EDU41582.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 2299

 Score = 40.9 bits (96), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 31  FSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ-------------DIP-DHDVLLAGFPC 76
           FS+EI  +     + NF   ++F D+     +             +IP   D+L+AGF C
Sbjct: 426 FSAEIEVFKQAFIERNFHPKILFRDVRDFIDESSTKATTAYGAEVEIPIGIDILVAGFVC 485

Query: 77  QPFSQ 81
           +  S+
Sbjct: 486 KDLSR 490


>gi|254224899|ref|ZP_04918514.1| Site-specific DNA methylase [Vibrio cholerae V51]
 gi|125622587|gb|EAZ50906.1| Site-specific DNA methylase [Vibrio cholerae V51]
          Length = 505

 Score = 40.9 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          + D F G GG    +E   N          +I    +P ++  ++ N P T  +     D
Sbjct: 8  VVDNFAGGGGASTGMELGLNR-------HVDIAINHDPEAIDMHKMNHPETKHYCESVWD 60

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  ++        +      C+ FS+A
Sbjct: 61 VDPVEACAGRPVGLAWFSPDCKHFSKA 87


>gi|333024419|ref|ZP_08452483.1| hypothetical protein STTU_1923 [Streptomyces sp. Tu6071]
 gi|332744271|gb|EGJ74712.1| hypothetical protein STTU_1923 [Streptomyces sp. Tu6071]
          Length = 244

 Score = 40.9 bits (96), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 18/82 (21%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI-NPYSVKTYQANFPNTLIFGD-----I 56
          ++ DLFC  GG      +       +     ++ +       + N+P T    D      
Sbjct: 16 RLLDLFCCAGGAATGYARA----GFDVVG-VDVAD-------RPNYPYTWHRADALAFLT 63

Query: 57 AKIKTQDIPDHDVLLAGFPCQP 78
            + + +I   D + A  PCQ 
Sbjct: 64 RLLDSGEIAGFDAVHASPPCQA 85


>gi|224078173|ref|XP_002196308.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 3 beta [Taeniopygia
           guttata]
          Length = 811

 Score = 40.9 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 22/92 (23%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEI--NPYS--------VKTYQANFPN 49
           +++  LF G+               ++   + +SEI  NP +          TY      
Sbjct: 525 IRVLSLFDGV---TTGYT-VLKDLGIQVEKYIASEICENPIAMGKVRPEGNITY------ 574

Query: 50  TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
                +I K   ++    D+++ G PC   S 
Sbjct: 575 VHDVRNITKRNIEEWGPFDLVIGGSPCDDVSL 606


>gi|151556943|gb|AAI49705.1| TRMT12 protein [Bos taurus]
 gi|296480674|gb|DAA22789.1| tRNA wybutosine-synthesizing protein 2 homolog [Bos taurus]
          Length = 438

 Score = 40.9 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 18/74 (24%)

Query: 4   ITDLFCGIGGIRLDL----EQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LI 52
           + DL+ GIG   L      E  F H       + E NP++V   + N           + 
Sbjct: 229 LVDLYAGIGYFTLPFLVHAEAAFVH-------ACEWNPHAVVALRNNLELNGVADRCQIH 281

Query: 53  FGDIAKIKTQDIPD 66
           FGD  K+K  ++ D
Sbjct: 282 FGDNRKLKLSNVAD 295


>gi|66792892|ref|NP_001019723.1| tRNA wybutosine-synthesizing protein 2 homolog [Bos taurus]
 gi|75057638|sp|Q58D65|TYW2_BOVIN RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|61554565|gb|AAX46579.1| hypothetical protein FLJ20772 [Bos taurus]
          Length = 438

 Score = 40.9 bits (96), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 18/74 (24%)

Query: 4   ITDLFCGIGGIRLDL----EQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LI 52
           + DL+ GIG   L      E  F H       + E NP++V   + N           + 
Sbjct: 229 LVDLYAGIGYFTLPFLVHAEAAFVH-------ACEWNPHAVVALRNNLELNGVADRCQIH 281

Query: 53  FGDIAKIKTQDIPD 66
           FGD  K+K  ++ D
Sbjct: 282 FGDNRKLKLSNVAD 295


>gi|13477024|ref|NP_108594.1| modification methylase [Mesorhizobium loti MAFF303099]
 gi|14027787|dbj|BAB54380.1| modification methylase [Mesorhizobium loti MAFF303099]
          Length = 667

 Score = 40.9 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           + I  LF G+GG    LE            +   +P +V  ++    +T     D+ +  
Sbjct: 27  MTIV-LFAGMGGGCDGLEDA----GFHVHVAINHDPVAVAVHEKRHQHTRHLRCDVFEAD 81

Query: 61  TQDI---PDHDVLLAGFPCQPFSQA 82
            + +        L A   C  FS A
Sbjct: 82  PRKVTGGRGVRALHASPDCTHFSVA 106


>gi|311109928|ref|YP_003982779.1| C-5 cytosine-specific DNA methylase 2 [Achromobacter xylosoxidans
           A8]
 gi|310764617|gb|ADP20064.1| C-5 cytosine-specific DNA methylase 2 [Achromobacter xylosoxidans
           A8]
          Length = 652

 Score = 40.9 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
           I D F G GG    LEQ F           +I    +P ++  +  N P T  +     D
Sbjct: 66  IIDNFAGGGGTSEGLEQAFGRP-------VDIAINHDPAAICLHAINHPWTKHYCESVWD 118

Query: 56  IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           I  IK        ++     C+ FS+A
Sbjct: 119 IDPIKVTGNRPVGLVWLSPDCRHFSKA 145


>gi|195978638|ref|YP_002123882.1| adenine/cytosine DNA methyltransferase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195975343|gb|ACG62869.1| adenine/cytosine DNA methyltransferase [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 810

 Score = 40.9 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 17/75 (22%)

Query: 25 RNVECFFSSEINPYSVKTYQAN----FPNTLIFGDIAKIKT-----QDIPD--------H 67
           N EC  ++EI    +   + N    F    I GDI +  T      +I           
Sbjct: 2  ENFECIATNEIVERRLAIQKNNQKCQFETGYISGDIKESNTKQRIYNEIKRWKNLGNDRV 61

Query: 68 DVLLAGFPCQPFSQA 82
          DV++A  PCQ  S A
Sbjct: 62 DVVVATPPCQGMSVA 76


>gi|167534001|ref|XP_001748679.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772920|gb|EDQ86566.1| predicted protein [Monosiga brevicollis MX1]
          Length = 454

 Score = 40.9 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIG   L       H       + E NP++V+  + N
Sbjct: 240 VVDLFAGIGYFTLPY---LVHARARFLHACEWNPHAVEALRRN 279


>gi|26988273|ref|NP_743698.1| methyltransferase, putative [Pseudomonas putida KT2440]
 gi|24983017|gb|AAN67162.1|AE016344_12 methyltransferase, putative [Pseudomonas putida KT2440]
          Length = 306

 Score = 40.9 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+PY+ +  +         P  +    I  +   D+                    
Sbjct: 4  YYNEIDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLKPYTQCHFFAGVGVWSYALR 63

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 64 RAGWPDDRPVWTGSCPCQPFSAAG 87


>gi|209884704|ref|YP_002288561.1| C-5 cytosine-specific DNA methylase [Oligotropha carboxidovorans
          OM5]
 gi|209872900|gb|ACI92696.1| C-5 cytosine-specific DNA methylase [Oligotropha carboxidovorans
          OM5]
          Length = 752

 Score = 40.9 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIKTQ 62
          + D F G GG    +                 + +++  ++ N P T  +  D+  +   
Sbjct: 16 VIDSFAGGGGTSEGIVAALGRDPDIAINH---DKFALAMHRINHPGTEHLIEDVVTVDAI 72

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
           +       +L     C+  S+A
Sbjct: 73 SMCAGRPVGMLWMSPDCKDHSKA 95


>gi|134095045|ref|YP_001100120.1| putative modification methylase [Herminiimonas arsenicoxydans]
 gi|133738948|emb|CAL61995.1| Putative modification methylase AgeI (Cytosine-specific
           methyltransferase AgeI) [Herminiimonas arsenicoxydans]
          Length = 523

 Score = 40.9 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 34/131 (25%), Gaps = 52/131 (39%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ--------------ANFPN 49
           I DLF G GG+         +       S+E+   + +T +              A  P 
Sbjct: 12  IVDLFAGPGGLGEGFSGLSKNA-FHIAISAEMEESAHQTLRLRAYYRLLKKKGVEALRPY 70

Query: 50  TLIFGDIAKIKTQDIPDHD-------------------------------------VLLA 72
            L    +  +   +    D                                     VL+ 
Sbjct: 71  YLFCNGVTALPYDEKSSPDWEEAGREALRLTLGDEDDNLRLDHLLKEMKIGADKPWVLIG 130

Query: 73  GFPCQPFSQAG 83
           G PCQ +S  G
Sbjct: 131 GPPCQAYSLVG 141


>gi|300858340|ref|YP_003783323.1| hypothetical protein cpfrc_00922 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685794|gb|ADK28716.1| hypothetical protein cpfrc_00922 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206058|gb|ADL10400.1| N6-adenine-specific methylasee [Corynebacterium
          pseudotuberculosis C231]
 gi|302330609|gb|ADL20803.1| Putative DNA methylase [Corynebacterium pseudotuberculosis 1002]
 gi|308276294|gb|ADO26193.1| Putative DNA methylase [Corynebacterium pseudotuberculosis I19]
          Length = 192

 Score = 40.5 bits (95), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLI 52
          ++ DLF G G   L LE     R  +     E NP +V+  + N      PN  +
Sbjct: 46 RVLDLFAGSG--ALGLEAA--SRGADEVVLVENNPKAVQIIRHNMQVVGHPNVTV 96


>gi|325190286|emb|CCA24762.1| trimethylguanosine synthase putative [Albugo laibachii Nc14]
          Length = 753

 Score = 40.5 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 14/80 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN-------PYSVKTYQANFPNTLIFGD 55
            + DLF G GG  + L QT +H       + EI+        ++ + Y  +     I GD
Sbjct: 597 TVVDLFAGCGGNTIQLAQTCHH-----VIAIEIDPLRIHKAKHNAQVYGVSDRIEWICGD 651

Query: 56  IAKIKTQDIPDHDVLLAGFP 75
             ++ ++     DV+    P
Sbjct: 652 ALEVISR--LQADVIFLSPP 669


>gi|296813227|ref|XP_002846951.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
 gi|238842207|gb|EEQ31869.1| DNA repair protein rad8 [Arthroderma otae CBS 113480]
          Length = 1955

 Score = 40.5 bits (95), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI+ +  ++Y Q NF   +IF D+ ++   +          +P D D+L+ GF C 
Sbjct: 170 LFSAEIDAF-KQSYIQRNFAPEIIFRDVNELVADEATTAFGSVRKVPTDPDLLVVGFSCV 228

Query: 78  PFS 80
            FS
Sbjct: 229 DFS 231


>gi|191174004|ref|ZP_03035521.1| cytosine methylase [Escherichia coli F11]
 gi|190905695|gb|EDV65317.1| cytosine methylase [Escherichia coli F11]
 gi|324014345|gb|EGB83564.1| C-5 cytosine-specific DNA methylase [Escherichia coli MS 60-1]
          Length = 342

 Score = 40.5 bits (95), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+P + +  +         P  +    I  +   D+                    
Sbjct: 5  YYNEIDPNAAQWLRNLIAAGHIAPGEVDERSIEDVAPDDLRGFTQCHFFAGIGVWSYALR 64

Query: 68 -----D---VLLAGFPCQPFSQAG 83
               D   V     PCQPFS AG
Sbjct: 65 LAGWPDNKPVWTGSCPCQPFSSAG 88


>gi|323448401|gb|EGB04300.1| hypothetical protein AURANDRAFT_67346 [Aureococcus anophagefferens]
          Length = 1640

 Score = 40.5 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 7   LFCGIGGIRLDLEQTFNHRN--VECFFSSEINPYSVKTYQANFPNTLIFGDI 56
            + GIGG    L++ +       +   + +    S + +Q  FP   +   I
Sbjct: 127 FYSGIGGFDKGLQRAWEKHGAAFKVVLAIDNCELSNEIHQNTFPGVTVVNHI 178


>gi|123442605|ref|YP_001006582.1| putative cytosine-specific modification methylase [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|122089566|emb|CAL12415.1| putative cytosine-specific modification methylase [Yersinia
          enterocolitica subsp. enterocolitica 8081]
          Length = 581

 Score = 40.5 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 17/91 (18%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG- 54
          +K  I D F G GG    +E            S +I    +P ++  +  N P+TL +  
Sbjct: 1  MKEIIVDNFAGGGGASTGIELATGR-------SVDIAINHDPNAIAMHTTNHPDTLHYCE 53

Query: 55 ---DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
             DI  +         +      C+ FS+A
Sbjct: 54 SVFDIDPVAATAGRPVGLAWFSPDCRHFSKA 84


>gi|317048385|ref|YP_004116033.1| C-5 cytosine-specific DNA methylase [Pantoea sp. At-9b]
 gi|316950002|gb|ADU69477.1| C-5 cytosine-specific DNA methylase [Pantoea sp. At-9b]
          Length = 584

 Score = 40.5 bits (95), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +P ++  +  N P+TL +     D
Sbjct: 5  IVDNFAGGGGASTGIEMATGR-------SVDIAINHDPNAIAMHTTNHPDTLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I  +         +      C+ FS+A
Sbjct: 58 IDPLAATAGAPVGLAWFSPDCRHFSKA 84


>gi|320040099|gb|EFW22033.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 2095

 Score = 40.5 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI P+  ++Y Q NF   ++F D+ ++   +          +P + D+L+AGF C 
Sbjct: 176 LFSAEIEPF-KQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNLDLLVAGFSCV 234

Query: 78  PFSQ 81
            FSQ
Sbjct: 235 DFSQ 238


>gi|303312199|ref|XP_003066111.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105773|gb|EER23966.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 2149

 Score = 40.5 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI P+  ++Y Q NF   ++F D+ ++   +          +P + D+L+AGF C 
Sbjct: 176 LFSAEIEPF-KQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNLDLLVAGFSCV 234

Query: 78  PFSQ 81
            FSQ
Sbjct: 235 DFSQ 238


>gi|198434782|ref|XP_002127192.1| PREDICTED: similar to tRNA methyltransferase 12 homolog [Ciona
           intestinalis]
          Length = 294

 Score = 40.5 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D+F GIG   L L     H       + E NP SV   +AN
Sbjct: 140 VIDMFAGIGYFTLPL---LVHSKARFVHACEWNPDSVTALKAN 179


>gi|311279157|ref|YP_003941388.1| C-5 cytosine-specific DNA methylase [Enterobacter cloacae SCF1]
 gi|308748352|gb|ADO48104.1| C-5 cytosine-specific DNA methylase [Enterobacter cloacae SCF1]
          Length = 659

 Score = 40.5 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 27/93 (29%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I D F G GG    +E            S +I    +  +V  +  N P TL +  D+  
Sbjct: 5  IVDNFAGGGGASTGIEMAIGR-------SVDIAINHDQNAVAMHTTNHPETLHYCEDVFD 57

Query: 59 IKTQDIPDHDVLLAGFP---------CQPFSQA 82
          I  +      V  AG P         C+ FS+A
Sbjct: 58 IDPR------VATAGRPVALAWFSPDCRHFSKA 84


>gi|194707300|gb|ACF87734.1| unknown [Zea mays]
          Length = 360

 Score = 40.5 bits (95), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 4   ITDLFCGIGGIRLDL-EQTFNHRNVECF-FSSEINPYSVKTYQANFPN--TLIFGDIAKI 59
           + DLFCG G I L    +  +    E    + E    + K  + N  N  T + GD+ KI
Sbjct: 209 VLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIE---DARKNAKLNGINNATFVQGDLNKI 265

Query: 60  KT---QDIPDHDVLL 71
                ++ P  D+++
Sbjct: 266 NESFGKEFPKPDIII 280


>gi|261363795|ref|ZP_05976678.1| C-5 cytosine-specific DNA methylase family protein [Neisseria
          mucosa ATCC 25996]
 gi|288568375|gb|EFC89935.1| C-5 cytosine-specific DNA methylase family protein [Neisseria
          mucosa ATCC 25996]
          Length = 530

 Score = 40.5 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 18/77 (23%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG-DIAK 58
          I DLF G GG    +EQ             +I    +  ++  + AN P T  F  D+  
Sbjct: 16 ICDLFAGGGGASCGIEQATG-------LYVDIAVNHDAQAISMHTANHPQTRHFQTDVFD 68

Query: 59 IKTQDIPDHDVLLAGFP 75
          +             G P
Sbjct: 69 VDPAQ------ACGGRP 79


>gi|320539479|ref|ZP_08039148.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320030604|gb|EFW12614.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 300

 Score = 40.5 bits (95), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+ Y+ +  +         P  +    I  +K  D+ ++                 
Sbjct: 4  YYNEIDSYAAQWLRNLIAAGHIAPGDVDERSIEDVKPDDLRNYTQCHFFAGIGVWSYALR 63

Query: 68 -----D---VLLAGFPCQPFSQAG 83
               D   V     PCQPFS AG
Sbjct: 64 NAGWPDEKPVWTGSCPCQPFSAAG 87


>gi|84495908|ref|ZP_00994762.1| modification methylase (Cytosine-specific methyltransferase)
           [Janibacter sp. HTCC2649]
 gi|84382676|gb|EAP98557.1| modification methylase (Cytosine-specific methyltransferase)
           [Janibacter sp. HTCC2649]
          Length = 498

 Score = 40.5 bits (95), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 56/136 (41%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKTYQAN-------------- 46
           + DLF G GG+                    S E++  +  T +                
Sbjct: 1   MVDLFAGPGGLNEGFSSLLRPDGDQVFRAVSSFEMDARACDTLRLRSAVRSLRGSTEGLS 60

Query: 47  FPNTLIFGDI-------------------AKIKTQDIPDH------DV------------ 69
           F +  + G+I                     ++  ++         DV            
Sbjct: 61  FYSGFLNGEISWSQLIEQREVAAGLRDAERHVQQVELGPASRDASSDVIRDALSSAGGGP 120

Query: 70  --LLAGFPCQPFSQAG 83
             L+ G PCQ +S  G
Sbjct: 121 WVLIGGPPCQAYSLVG 136


>gi|238493629|ref|XP_002378051.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
 gi|220696545|gb|EED52887.1| SNF2 family helicase, putative [Aspergillus flavus NRRL3357]
          Length = 2055

 Score = 40.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 14  IRLDLEQTFN-HRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------Q 62
             +DL + FN        FS+EI PY  +    NF   L+F D+ ++K           +
Sbjct: 148 FSIDLRKHFNRDFKFRHLFSAEIVPYKQRYIDNNFHPRLLFRDVTQLKDRVAQTAYGSLE 207

Query: 63  DIP-DHDVLLAGFPCQPFS 80
            +P + D+L+AGF C  FS
Sbjct: 208 KVPRNPDMLIAGFSCVDFS 226


>gi|119193294|ref|XP_001247253.1| hypothetical protein CIMG_01024 [Coccidioides immitis RS]
          Length = 2097

 Score = 40.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)

Query: 30  FFSSEINPYSVKTY-QANFPNTLIFGDIAKIKTQD----------IP-DHDVLLAGFPCQ 77
            FS+EI P+  ++Y Q NF   ++F D+ ++   +          +P + D+L+AGF C 
Sbjct: 210 LFSAEIEPF-KQSYIQRNFSPAILFRDVNELVNDEATTAFGSMRKVPTNPDLLVAGFSCV 268

Query: 78  PFSQ 81
            FSQ
Sbjct: 269 DFSQ 272


>gi|47225350|emb|CAG09850.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 391

 Score = 40.5 bits (95), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
            + DL+ GIG   L       H       + E NP +VK  Q N          T+  GD
Sbjct: 210 TVVDLYAGIGYFTLPY---LVHAKARHVHACEWNPEAVKALQKNLVTNGVSEHCTIHPGD 266

Query: 56  IAKIKTQDIPD 66
             K++  D+ D
Sbjct: 267 NRKLQLVDVAD 277


>gi|260845243|ref|YP_003223021.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257760390|dbj|BAI31887.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
          Length = 337

 Score = 40.5 bits (95), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDH----------------- 67
          + +EI+P + +  +         P  +    I  +   D+                    
Sbjct: 5  YYNEIDPNAAQWLRNLIAAGHIAPGEVDERSIEDVAPDDLRGFTQCHFFAGIGVWSYALR 64

Query: 68 -----D---VLLAGFPCQPFSQAG 83
               D   V     PCQPFS AG
Sbjct: 65 LAGWPDNKPVWTGSCPCQPFSSAG 88


>gi|304436864|ref|ZP_07396829.1| C-5 cytosine-specific DNA methylase [Selenomonas sp. oral taxon
          149 str. 67H29BP]
 gi|304370179|gb|EFM23839.1| C-5 cytosine-specific DNA methylase [Selenomonas sp. oral taxon
          149 str. 67H29BP]
          Length = 409

 Score = 40.5 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +P ++  ++AN P++  +     D
Sbjct: 4  IVDNFAGGGGASTGIELATGR-------SVDIAINHDPTAIAMHRANHPSSKHYCENVWD 56

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  ++        +      C+ FS+A
Sbjct: 57 VDPVEACAGRPVGLAWFSPDCKHFSKA 83


>gi|254711754|ref|ZP_05173565.1| DNA-cytosine methyltransferase [Brucella pinnipedialis B2/94]
 gi|256029614|ref|ZP_05443228.1| DNA-cytosine methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|260167298|ref|ZP_05754109.1| DNA-cytosine methyltransferase [Brucella sp. F5/99]
          Length = 258

 Score = 40.5 bits (95), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 68 DVLLAGFPCQPFSQAG 83
          D++  G PCQ +S AG
Sbjct: 17 DLITGGPPCQDYSVAG 32


>gi|212693469|ref|ZP_03301597.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
 gi|212663982|gb|EEB24556.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 40.5 bits (95), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQ 62
           I D+ CG+G          N  N    +  +I+  +V   +  +P+  +   DI +   +
Sbjct: 95  ILDMCCGMGNF---FNHLPNRHN---VYGFDIDGKAVAVAKYLYPDAHIEKCDIRQYDPE 148

Query: 63  DIPDHDVLLAGFP 75
                D+++   P
Sbjct: 149 Q--RFDIIIGNPP 159


>gi|182437140|ref|YP_001824859.1| hypothetical protein SGR_3347 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178465656|dbj|BAG20176.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 218

 Score = 40.1 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 11/81 (13%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ DLFC  GG  +   +       +      I+      Y    P   I  D      
Sbjct: 6  LRVLDLFCCQGGAAMGYHRA----GFDVTG---IDLAPQPRY----PFRFIQADAIDYVR 54

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
          +   + D + A  PCQ +S+A
Sbjct: 55 EHGAEFDFIHASPPCQRYSRA 75


>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
 gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
          Length = 188

 Score = 40.1 bits (94), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 9/77 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DLF G G   L LE     R        E +P ++   + N        D+A +   
Sbjct: 47  RVLDLFAGSG--ALGLEAA--SRGARSVVLVENDPNAIAAIEKNIRTVGHP-DVA-VSPM 100

Query: 63  DIPDHDVLLAGFPCQPF 79
            +  +   LAG P +PF
Sbjct: 101 KVSSY---LAGAPGEPF 114


>gi|328869161|gb|EGG17539.1| DNA (cytosine-5-)-methyltransferase [Dictyostelium fasciculatum]
          Length = 373

 Score = 40.1 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 28/106 (26%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           + I + F GIGG+    + +     V+  F  +IN  +   Y  N+    +         
Sbjct: 1   MNIIEYFSGIGGMYYSAKLSGVPFTVKQSF--DINTTANTCY--NYSIHSLSNTDNNNNT 56

Query: 55  -----------------DIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
                            D   +K  +    +  L   PCQPF + G
Sbjct: 57  TNSKSKKKNVVVNNKSIDALTVKDLESYKANTWLMSPPCQPFCRVG 102


>gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 250

 Score = 40.1 bits (94), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLFCG GG  + L +       E   + +I+P +++  + N
Sbjct: 64  VLDLFCGCGGDTVQLARV-----YEKVVAVDIDPDAIEAAKKN 101


>gi|186685136|ref|YP_001868332.1| hypothetical protein Npun_F5051 [Nostoc punctiforme PCC 73102]
 gi|186467588|gb|ACC83389.1| hypothetical protein Npun_F5051 [Nostoc punctiforme PCC 73102]
          Length = 174

 Score = 40.1 bits (94), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
            LF G  G+ L +E+             EI+  + KT   N P+ 
Sbjct: 9  IALFAGAFGLDLGIEEA----GFYTVSVVEIDADATKTIILNRPHN 50


>gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 406

 Score = 40.1 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 231 KVIDLCAAPGG--KTFNCAEVIDGF--VVACDINEHKLDVLRENILRLGFDNIIVAKSDA 286

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 287 EVFNPDFAEKFDIVIADLPCTGF 309


>gi|238810090|dbj|BAH69880.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 416

 Score = 40.1 bits (94), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 52  IFGDIAKIKTQDIP--DHDVLLAGFPCQPFSQA 82
            F DI KI  + +     D++   FPCQ  S A
Sbjct: 115 NFNDITKITKEQLDQLHFDLITYSFPCQGLSSA 147


>gi|240102982|ref|YP_002959291.1| Met-10 like-protein, putative SAM-dependent methyltransferase
           [Thermococcus gammatolerans EJ3]
 gi|239910536|gb|ACS33427.1| Met-10 like-protein, putative SAM-dependent methyltransferase
           [Thermococcus gammatolerans EJ3]
          Length = 331

 Score = 40.1 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDIA 57
           + D+F G+G   + L +       +  F+ ++NP++++  + N           I GD+ 
Sbjct: 185 VFDMFAGVGPYSILLAR-----KAKLVFACDLNPWAIRYLEENIRLNKAHNLVPILGDVR 239

Query: 58  KI 59
           K+
Sbjct: 240 KV 241


>gi|283798042|ref|ZP_06347195.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
 gi|291074344|gb|EFE11708.1| RNA methyltransferase, RsmD family [Clostridium sp. M62/1]
 gi|295091819|emb|CBK77926.1| RNA methyltransferase, RsmD family [Clostridium cf.
          saccharolyticum K10]
          Length = 190

 Score = 40.1 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          +  DLF G GGI   +E     R  E     E +P +V+  ++N   T +  
Sbjct: 44 RFLDLFSGSGGI--GIEAL--SRGGELAVFVENSPKAVEVIRSNLKTTHLED 91


>gi|218506488|ref|ZP_03504366.1| C-5 cytosine-specific DNA methylase [Rhizobium etli Brasil 5]
          Length = 185

 Score = 40.1 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIK 60
           + +  LF G+GG    LE            +   +P ++  ++   P+T     D+ ++ 
Sbjct: 113 MTVV-LFAGMGGGCDGLEDA----GFHVHLAVNHDPLAIAMHEKRHPHTKHLRCDVFEVD 167

Query: 61  T 61
            
Sbjct: 168 P 168


>gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative,pseudogene
           [Trypanosoma brucei gambiense DAL972]
          Length = 251

 Score = 40.1 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DLFCG GG  + L Q F         + +I+P +++  + N
Sbjct: 65  LDLFCGCGGDTVQLAQVFEK-----VIAVDIDPDAIEAAKKN 101


>gi|213498016|emb|CAS84143.1| domains rearranged methyltransferase [Nicotiana tomentosiformis]
          Length = 259

 Score = 40.1 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 11/81 (13%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTY--QAN-FPNTLIFGDIA 57
           + +  LF GIGG  + L +     N       SE+N   V+++  Q N   N + F D+ 
Sbjct: 179 INVLSLFSGIGGGEVALYRLGIPLNTVVSVEKSEVNRDIVRSWWEQTNQRGNLIHFNDVQ 238

Query: 58  KIK-------TQDIPDHDVLL 71
           ++         +     D+++
Sbjct: 239 QLNGDRLEQLIESFGGFDLVI 259


>gi|146085575|ref|XP_001465317.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|321398858|emb|CBZ08309.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322496175|emb|CBZ31246.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 390

 Score = 40.1 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+FCGIG   L L    N   +    + E NP S+   + N            + GD 
Sbjct: 233 VVDMFCGIGYFTLPLAMHGNVAAIH---ALEKNPDSIDFLKLNAVLNKVDHLIRPVCGDN 289

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
            ++  + +   D +L G    C+ F
Sbjct: 290 REVGEELLGKCDRVLMGYIPTCKSF 314


>gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting
           protein, putative [Trypanosoma cruzi]
          Length = 250

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLFCG GG  + L +       E   + +I+P +++  + N
Sbjct: 64  VLDLFCGCGGDTVQLARV-----YEKVVAVDIDPDAIEAAKKN 101


>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 410

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 235 KVIDLCAAPGG--KTFNCAEVIDGF--VVACDINEHKLDVLRENILRLGFDNIIVAKSDA 290

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 291 EVFNPDFAEKFDIVIADLPCTGF 313


>gi|251778642|ref|ZP_04821562.1| methyl transferase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082957|gb|EES48847.1| methyl transferase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 586

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 38  YSVKTYQANFP--NTLIFGDIAKIK-TQDIPDHDVLLAGFPCQPFSQAG 83
           +  ++Y AN+   +     +++ I   Q     D+ + G PCQ FS  G
Sbjct: 218 FVKQSYFANYDITDERFHWNVSFIDGAQYTNKVDLFVGGSPCQSFSMVG 266



 Score = 37.4 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
          MLKI  +F GIG I   L++       E  F+S+     V  ++ N     I  DI  
Sbjct: 1  MLKIATVFSGIGAIEHALKRIGIEH--EIVFASDNGE--VNIFKKNIGTNFI--DIKN 52


>gi|170084587|ref|XP_001873517.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651069|gb|EDR15309.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1273

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 32/105 (30%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD--------- 55
            DLF G+G     L        +    + EI P + KT + N P T+++           
Sbjct: 750 LDLFGGVGAFSKGL--AEGSECLRVTHAVEIGPSAAKTLERNSPGTIVYNQCANTMLRYA 807

Query: 56  IAKIKTQDIPD-----HD---------------VLLAGFPCQPFS 80
           I   +    PD      D               V   GFPCQ  S
Sbjct: 808 IKSCEGHK-PDPPVQLFDGKTPVPAPPKPGEIKVFTIGFPCQTHS 851


>gi|308172453|ref|YP_003919158.1| C-5 cytosine-specific DNA methylase [Bacillus amyloliquefaciens
          DSM 7]
 gi|307605317|emb|CBI41688.1| C-5 cytosine-specific DNA methylase [Bacillus amyloliquefaciens
          DSM 7]
          Length = 458

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    +E            S +I    +P ++  +Q N P+T  + + + +
Sbjct: 13 IVDNFAGGGGASTGIELATG-------LSVDIAINHDPAAIAMHQVNHPDTEHYCESVWE 65

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +  ++        +      C+ FS+A
Sbjct: 66 VDPREAAKGRPIGLAWFSPDCKHFSKA 92


>gi|328910553|gb|AEB62149.1| C-5 cytosine-specific DNA methylase [Bacillus amyloliquefaciens
          LL3]
          Length = 458

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    +E            S +I    +P ++  +Q N P+T  + + + +
Sbjct: 13 IVDNFAGGGGASTGIELATG-------LSVDIAINHDPAAIAMHQVNHPDTEHYCESVWE 65

Query: 59 IKTQDIPD---HDVLLAGFPCQPFSQA 82
          +  ++        +      C+ FS+A
Sbjct: 66 VDPREAAKGRPIGLAWFSPDCKHFSKA 92


>gi|42766606|gb|AAS45433.1| At5g15380 [Arabidopsis thaliana]
          Length = 307

 Score = 40.1 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------D 55
           + +  LF GIGG  + L +      +    S EI+  +    ++ +  T   G      D
Sbjct: 235 INVLSLFTGIGGGEVALHRL--QIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKD 292

Query: 56  IAKIKTQDI 64
           + K+    I
Sbjct: 293 VQKLDDNTI 301


>gi|167552502|ref|ZP_02346255.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205322882|gb|EDZ10721.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
          Length = 693

 Score = 39.7 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 27/93 (29%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    +E            S +I    +P +V  +  N P+TL + + +  
Sbjct: 6  IVDNFAGGGGASTGIEMAIGR-------SVDIAINHDPNAVAMHTTNHPDTLHYCESVFT 58

Query: 59 IKTQDIPDHDVLLAGFP---------CQPFSQA 82
          +  +      ++ AG P         C+ FS+A
Sbjct: 59 VNPK------IVTAGRPVALAWYSPDCRHFSKA 85


>gi|326328817|ref|ZP_08195153.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nocardioidaceae bacterium Broad-1]
 gi|325953439|gb|EGD45443.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nocardioidaceae bacterium Broad-1]
          Length = 273

 Score = 39.7 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKIK 60
           K+ DL CG G   L         +V   ++++I+P +V+  +AN      ++ GD+    
Sbjct: 112 KVLDLCCGTG--ALGAAVAVRRPDVR-MWATDIDPAAVECARANLSSGGQVLLGDLYDPL 168

Query: 61  TQDIPDHDVLLAGFP 75
             D+   DV++A  P
Sbjct: 169 PHDLA-FDVIVANAP 182


>gi|47221238|emb|CAG13174.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 835

 Score = 39.7 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKT-YQANFPNTLIFGDIAK 58
           +++  LF GI      L        +E   + +SE+   S+   +  +    +  GD+  
Sbjct: 552 IRVLSLFDGI---ATGL-LVLKELGIEVDRYVASEVCEDSITLGFVRHQGRIMYVGDVRG 607

Query: 59  IKTQDIPD---HDVLLAGFPCQPFSQ 81
           +  + I +    D+++ G PC   S 
Sbjct: 608 VTRKHIQEWGPFDLVIGGSPCNDLSI 633


>gi|328852113|gb|EGG01261.1| hypothetical protein MELLADRAFT_79036 [Melampsora larici-populina
           98AG31]
          Length = 2231

 Score = 39.7 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 30  FFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-DHDVLLAGFPCQP 78
            FS EI P+     + NF   ++F D+ ++  +           +P D D+L+AG  C  
Sbjct: 264 VFSCEIEPFKQAYIERNFQPPILFRDVCELGQEKATTAYGAQVTVPNDVDMLIAGTSCVD 323

Query: 79  FS 80
           +S
Sbjct: 324 YS 325


>gi|300709256|ref|XP_002996794.1| hypothetical protein NCER_100053 [Nosema ceranae BRL01]
 gi|239606119|gb|EEQ83123.1| hypothetical protein NCER_100053 [Nosema ceranae BRL01]
          Length = 196

 Score = 39.7 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I DL CG G     L    +  N       +I+  ++K Y+ N  + L   DI K    
Sbjct: 51  RILDLCCGTGM----LSAAVSFFNPSTIVGVDIDYEAIKIYKENL-DHLNNVDIVKADFN 105

Query: 63  DIP----DHDVLLAGFP 75
           ++       D ++   P
Sbjct: 106 NLEFRSGFFDTVIMNPP 122


>gi|227548104|ref|ZP_03978153.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227079830|gb|EEI17793.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 194

 Score = 39.7 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIF 53
           + DLF G G   L LE     R        E +P +VK  + N      PN  + 
Sbjct: 46 TVLDLFAGSG--ALGLEAA--SRGASEVVLVENDPRAVKVIEYNASVVGHPNVHVE 97


>gi|222445333|ref|ZP_03607848.1| hypothetical protein METSMIALI_00961 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350106|ref|ZP_05975523.1| methyltransferase [Methanobrevibacter smithii DSM 2374]
 gi|222434898|gb|EEE42063.1| hypothetical protein METSMIALI_00961 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860892|gb|EFC93190.1| methyltransferase [Methanobrevibacter smithii DSM 2374]
          Length = 245

 Score = 39.7 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDI 56
            + D+F GIG   +       H N +  +S EINP S    + N           + GD 
Sbjct: 99  TVIDMFAGIGYFSIP---IGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDC 155

Query: 57  AKIKTQDIPDHDVLLAGF 74
             I  +     D ++ G+
Sbjct: 156 MDITPEY--SADRIIMGY 171


>gi|152984997|ref|YP_001347885.1| modification methylase DdeI [Pseudomonas aeruginosa PA7]
 gi|150960155|gb|ABR82180.1| modification methylase DdeI [Pseudomonas aeruginosa PA7]
          Length = 518

 Score = 39.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------------FP- 48
           K  DLF         L    +   +   F+ E +  +  T   N             +P 
Sbjct: 75  KFADLFA----GCGGLSLGLSLAGLNGVFAVERDKMAFSTLSTNLIERKDVPITPFAWPS 130

Query: 49  ----NTLIFGDIAKIKTQDIP----DHDVLLAGFPCQPFSQAG 83
                     DI      ++        VL  G PCQ FS AG
Sbjct: 131 WLEKQAWGIDDILDQHGAELASLRGKIQVLAGGPPCQGFSFAG 173


>gi|163759244|ref|ZP_02166330.1| C-5 cytosine-specific DNA methylase [Hoeflea phototrophica
          DFL-43]
 gi|162283648|gb|EDQ33933.1| C-5 cytosine-specific DNA methylase [Hoeflea phototrophica
          DFL-43]
          Length = 755

 Score = 39.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT- 61
          I D F G GG    +E           ++   +P +V  +  N P+   +  ++ ++   
Sbjct: 6  IIDCFAGGGGASTGIEMALGRSPD---YAINHDPVAVAMHAVNHPDSVHLCQNVYQVDPL 62

Query: 62 QDIPDHDV--LLAGFPCQPFSQA 82
                 +        C+ FS+A
Sbjct: 63 DHFNRAHIGFAWFSPDCKHFSKA 85


>gi|319761948|ref|YP_004125885.1| c-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          BC]
 gi|317116509|gb|ADU98997.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          BC]
          Length = 381

 Score = 39.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 51 LIFGDIAKIKTQDIPDH-DVLLAGFPCQPFSQAG 83
           I+ D+            D ++AGFPCQ  S AG
Sbjct: 46 PIWSDLLTFDGTAWRGCVDFIIAGFPCQDISIAG 79


>gi|297566490|ref|YP_003685462.1| hypothetical protein Mesil_2082 [Meiothermus silvanus DSM 9946]
 gi|296850939|gb|ADH63954.1| Protein of unknown function methylase putative [Meiothermus
          silvanus DSM 9946]
          Length = 172

 Score = 39.7 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DL+ G G I   LE        E     E +P +V+  +AN
Sbjct: 45 RFLDLYAGSGAI--GLEAA--SEGFEVVL-VEKDPQAVRILRAN 83


>gi|294776807|ref|ZP_06742270.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
 gi|294449283|gb|EFG17820.1| DNA (cytosine-5-)-methyltransferase [Bacteroides vulgatus PC510]
          Length = 334

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
            D++  G PCQ FS AG
Sbjct: 15 KVDLVAGGPPCQGFSMAG 32


>gi|148643096|ref|YP_001273609.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
 gi|148552113|gb|ABQ87241.1| predicted methyltransferase [Methanobrevibacter smithii ATCC 35061]
          Length = 245

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDI 56
            + D+F GIG   +       H N +  +S EINP S    + N           + GD 
Sbjct: 99  TVIDMFAGIGYFSIP---IGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNIIPLLGDC 155

Query: 57  AKIKTQDIPDHDVLLAGF 74
             I  +     D ++ G+
Sbjct: 156 MDITPEY--SADRIIMGY 171


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 14/75 (18%)

Query: 20  QTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI----------KTQDIP---- 65
           Q  +   VE  FSSE+ P+     Q NF   L+F D+ ++            +D+P    
Sbjct: 326 QHGSPFPVEHIFSSEVEPFKQAYIQRNFAPPLLFRDVRELGNKRAHTAFGALEDVPQDRD 385

Query: 66  DHDVLLAGFPCQPFS 80
             DVL+AG  C  +S
Sbjct: 386 HFDVLIAGTSCVDYS 400


>gi|323446127|gb|EGB02416.1| hypothetical protein AURANDRAFT_68904 [Aureococcus anophagefferens]
          Length = 336

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 21  TFNHRNVECFFSSEINP---YSVKTYQANFPNTLIFGDIAKIKTQ------DIPDHDVLL 71
            F++  ++     E+     ++ +T    FP+     DI K+         +I + D+L+
Sbjct: 149 GFSNMPIKIVSFIEVGKNFEHAKET----FPDAQALNDIRKVNEDIEQDKLNIVEFDLLV 204

Query: 72  AGFPC 76
             FPC
Sbjct: 205 CSFPC 209


>gi|329888667|ref|ZP_08267265.1| putative DNA methylase [Brevundimonas diminuta ATCC 11568]
 gi|328847223|gb|EGF96785.1| putative DNA methylase [Brevundimonas diminuta ATCC 11568]
          Length = 237

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
          M++I DL+   GG     +    H          +I P     Y     +     D+  I
Sbjct: 1  MIRIADLYSCAGGAGYGFKLAGAHVTGF------DIKPQPR--YA---GDAFEQRDVLAI 49

Query: 60 KTQDIPD-HDVLLAGFPCQPFSQ 81
            +++ +  D + A   CQ  ++
Sbjct: 50 SAEELRERFDFIHASPKCQGLTE 72


>gi|109946968|ref|YP_664196.1| DNA-cytosine methyltransferase [Helicobacter acinonychis str.
          Sheeba]
 gi|109714189|emb|CAJ99197.1| DNA-cytosine methyltransferase [Helicobacter acinonychis str.
          Sheeba]
          Length = 377

 Score = 39.4 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
            DV+  G PCQ +S AG
Sbjct: 69 KIDVIFGGPPCQAYSLAG 86


>gi|310792779|gb|EFQ28240.1| hypothetical protein GLRG_03384 [Glomerella graminicola M1.001]
          Length = 1078

 Score = 39.4 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 24/103 (23%)

Query: 2   LKITDLFCGIGGIRLD---LEQTFNHRNV------ECFFSSEINPYSVKTYQANFPNT-L 51
            +I  +  G  G  L      +    R        +  FS EI+P+     + N P +  
Sbjct: 324 FRIATMCSGTDGPILALREFAEAATGRGYLGVLRYDHVFSVEIDPFKQAFIERNSPPSGP 383

Query: 52  IFGDIAKI-------------KTQDIP-DHDVLLAGFPCQPFS 80
           IF ++  +                DIP D D+L+AG  C  FS
Sbjct: 384 IFRNVIDVGRPGAVQAMTASGAMADIPTDIDILVAGSSCVDFS 426


>gi|307106877|gb|EFN55121.1| expressed protein [Chlorella variabilis]
          Length = 1195

 Score = 39.4 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 41 KTYQANFPNTLIFGDIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
          +  +++FP   I  D+  I  + +P+  ++L+AGFPC   S+AG
Sbjct: 32 QVLRSSFPGVRIHDDV--ISLERLPEETELLVAGFPCIDVSRAG 73


>gi|254169095|ref|ZP_04875932.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|197621934|gb|EDY34512.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
          Length = 346

 Score = 39.4 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIA 57
           I DLF GIG   L L +      V+  ++ E NP + +    N           +FGD  
Sbjct: 196 IVDLFAGIGYFTLPLAKYGR---VKKIYACEKNPIAYRYLLENIELNQLENIIPLFGDNR 252

Query: 58  KIKTQDIPDHDVLLAGF 74
            I    I   D ++ G+
Sbjct: 253 NISPLKI--ADRVIMGY 267


>gi|189016742|ref|YP_001711781.1| putative DNA modification methylase [Clavibacter michiganensis
          subsp. sepedonicus]
 gi|167728913|emb|CAQ03295.1| putative DNA modification methylase [Clavibacter michiganensis
          subsp. sepedonicus]
          Length = 544

 Score = 39.4 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 37 PYSVKTYQANFPNT-LIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            +++T+  N P+T     D++++  +  P   +L     C   SQA
Sbjct: 9  KLAIETHNTNHPDTDHDIADLSQVDPRRYPRTKILWGSPECTSHSQA 55


>gi|145604116|ref|XP_360423.2| hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145012186|gb|EDJ96842.1| predicted protein [Magnaporthe oryzae 70-15]
          Length = 326

 Score = 39.4 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 20 QTFNHRNVECFFSSEINPYSVKTYQA------NFPNTLIFGDIAKIKTQDIPDHDVLLAG 73
             +   ++C ++++ +  +   Y+       NF +   F ++ K   ++IP  +VL  G
Sbjct: 1  MALSELGLKCVYANDNSELAASIYEKNHTMEQNFVDKRDFSEVVKHHLKEIPRANVLSVG 60


>gi|300024520|ref|YP_003757131.1| C-5 cytosine-specific DNA methylase [Hyphomicrobium denitrificans
          ATCC 51888]
 gi|299526341|gb|ADJ24810.1| C-5 cytosine-specific DNA methylase [Hyphomicrobium denitrificans
          ATCC 51888]
          Length = 548

 Score = 39.4 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK--TYQANFPNTLIF-GDIAKIK 60
          I D F G GG  L +E     +  +      IN  ++    +  N P+T     D+  + 
Sbjct: 6  IIDNFAGGGGASLGVEMAC-WKGPDIA----INHDAIALGLHATNHPHTEHHVEDVWAVD 60

Query: 61 TQDI---PDHDVLLAGFPCQPFSQA 82
           + +       +      C+ FS+A
Sbjct: 61 PRAVTKGRPVSLAWFSPDCKHFSKA 85


>gi|237731131|ref|ZP_04561612.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906670|gb|EEH92588.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 665

 Score = 39.4 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +  ++  ++ N P+TL +     D
Sbjct: 5  IVDNFAGGGGASTGIELAIGR-------SVDIAINHDENAIAMHKTNHPDTLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  +         +      C+ FS+A
Sbjct: 58 VDPVAATGGNPVGLAWFSPDCRHFSKA 84


>gi|251795624|ref|YP_003010355.1| C-5 cytosine-specific DNA methylase [Paenibacillus sp. JDR-2]
 gi|247543250|gb|ACT00269.1| C-5 cytosine-specific DNA methylase [Paenibacillus sp. JDR-2]
          Length = 558

 Score = 39.4 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    +E            +   +P ++  ++AN P+T  + + +  +  +
Sbjct: 9  IVDNFAGGGGASTGIELAIGRS---VDVAINHDPAAIAMHKANHPDTEHYCESVWDVDPR 65

Query: 63 DIP---DHDVLLAGFPCQPFSQA 82
           +       +      C+ FS+A
Sbjct: 66 QVARGQQVALCWLSPDCKHFSKA 88


>gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 200

 Score = 39.4 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLFCG GG  + L +       E   + +I+P +++  + N
Sbjct: 64  VLDLFCGCGGDTVQLARV-----YEKVVAVDIDPDAIEAAKKN 101


>gi|320040035|gb|EFW21969.1| RNA methylase [Coccidioides posadasii str. Silveira]
          Length = 240

 Score = 39.4 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G+GG  +   ++   R     ++ E +P S++  + N          T   GD 
Sbjct: 77  VIDTFAGVGGNAIAFARSNKWRR---VYAIEKDPASLQCAKHNAKIYGVEDKITWFQGDC 133

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +D+  + V+ A  P
Sbjct: 134 FEILKTQLKDLAPYSVIFASPP 155


>gi|303312089|ref|XP_003066056.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105718|gb|EER23911.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 240

 Score = 39.4 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G+GG  +   ++   R     ++ E +P S++  + N          T   GD 
Sbjct: 77  VIDTFAGVGGNAIAFARSNKWRR---VYAIEKDPASLQCAKHNAKIYGVEDKITWFQGDC 133

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +D+  + V+ A  P
Sbjct: 134 FEILKTQLKDLAPYSVIFASPP 155


>gi|196047975|ref|ZP_03115153.1| C-5 cytosine-specific DNA methylase [Bacillus cereus 03BB108]
 gi|196021231|gb|EDX59960.1| C-5 cytosine-specific DNA methylase [Bacillus cereus 03BB108]
          Length = 471

 Score = 39.4 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D F G GG    +E              +I    +P ++  ++ N P+T  + + + +
Sbjct: 10 IVDSFAGGGGASTGIELATGLP-------VDIAINHDPDAIAMHKVNHPDTEHYCESVWE 62

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          +  +         +      C+ FS+A
Sbjct: 63 VDPRKAVKGRKVALCWFSPDCKHFSKA 89


>gi|254168253|ref|ZP_04875099.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|197622762|gb|EDY35331.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
          Length = 311

 Score = 39.4 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDI 56
            I D+F G G   +       ++ V+  ++ +INPY+++  + N         T I GD 
Sbjct: 164 TIFDMFAGCGPFSI---LIAKYKKVKI-YACDINPYAIEYLEENIKINKVEGITPILGDA 219

Query: 57  AKIKTQDIPDHDVLLA 72
             +  ++I   D ++ 
Sbjct: 220 RDV-AKEI-KADRIIM 233


>gi|18071217|ref|NP_542311.1| hypothetical protein PBC5p51 [Sinorhizobium phage PBC5]
 gi|17940323|gb|AAL49567.1|AF448724_4 unknown [Sinorhizobium phage PBC5]
          Length = 751

 Score = 39.0 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 33/105 (31%)

Query: 7   LFCGIGGIRLDLEQTFNHRN-----VECFFSSEINPYSVK-------------------T 42
           LFCG+G       +             C    + +P +++                    
Sbjct: 17  LFCGLGAGAKGFNKGSARVGSLNAKFRCIGGIDNDPAAIRDFTRLAGVPGTLLDLFDLEQ 76

Query: 43  YQANFPNTL-------IFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
           Y+A             +  DI +    + P  D++    PC+ FS
Sbjct: 77  YRAFHSRDPDPDWQQAVPDDIRRAAHGEFP--DIVFLSAPCKGFS 119


>gi|326922768|ref|XP_003207617.1| PREDICTED: methyltransferase-like protein 5-like isoform 2
           [Meleagris gallopavo]
          Length = 229

 Score = 39.0 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
            + DL CG G + +          + C    +I+  +++ + +N  +  +   D+ +   
Sbjct: 54  TVADLGCGCGMLSIG--SAMLGAGL-CVGF-DIDAEALEIFNSNLEDFELTNVDVVQCDV 109

Query: 62  QDIPD-----HDVLLAGFP 75
             +PD      D ++   P
Sbjct: 110 SSLPDSMSETFDTVIMNPP 128


>gi|297243817|ref|ZP_06927747.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis AMD]
 gi|296888238|gb|EFH26980.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis AMD]
          Length = 332

 Score = 39.0 bits (91), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 18/85 (21%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------------- 49
            + DL  G G I   L       + +  ++ E +P + +  + NF               
Sbjct: 122 TVVDLCAGSGAI--GLSIATEVADAQ-VWAVEKSPEAFQYLRKNFEETAKNYENMQISSR 178

Query: 50  -TLIFGDIAKIKTQDI-PDHDVLLA 72
              +  D  K    D+ P+   +  
Sbjct: 179 YHAVLADATKAHISDLTPELHAICG 203


>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
 gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
          Length = 558

 Score = 39.0 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-FPN-TLIFGDIAKI 59
           + DLFCG G  G+ L   +  +    E     E    + K  + N   N T + GD+ KI
Sbjct: 407 VLDLFCGTGTIGLTLA-RRAKHVYGYEVV--PEAIADARKNAKLNGIDNATFVQGDLNKI 463

Query: 60  KT---QDIPDHDVLL 71
                ++ P  D+++
Sbjct: 464 NESFGKEFPKPDIII 478


>gi|18977199|ref|NP_578556.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|50401623|sp|Q8U2K7|Y827_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF0827
 gi|18892856|gb|AAL80951.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 409

 Score = 39.0 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT 42
           K+ DL+ GIG   L L +    +        EIN  +V+ 
Sbjct: 272 KVLDLYSGIGTFSLYLTK----KGFNVVG-VEINKTAVEV 306


>gi|307110413|gb|EFN58649.1| hypothetical protein CHLNCDRAFT_50474 [Chlorella variabilis]
          Length = 1332

 Score = 39.0 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D+F G G + L  ++       +  F  E +  +   Y  N
Sbjct: 557 MVDVFGGAGCVSLGFKKA----GFQWVFGVEQDKDAFTAYSRN 595


>gi|225155383|ref|ZP_03723875.1| C-5 cytosine-specific DNA methylase [Opitutaceae bacterium TAV2]
 gi|224803839|gb|EEG22070.1| C-5 cytosine-specific DNA methylase [Opitutaceae bacterium TAV2]
          Length = 287

 Score = 39.0 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQA-NFPNTLIFGD-----IAKIKTQDIPDHD---------------- 68
          + +EI+P +    +     N +  GD     I ++   DI  +                 
Sbjct: 3  YYNEIDPKAATWLRELIRQNLIPAGDVDERSITEVSPYDIDGYTQCHFFAGVGGWPLASQ 62

Query: 69 ---------VLLAGFPCQPFSQAG 83
                   V     PCQPFS AG
Sbjct: 63 LAGWPTTRPVWTGSCPCQPFSVAG 86


>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 410

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 235 KVIDLCAAPGG--KTFNCAEVIDGF--VVACDINEHKLDILRENILRLGFDNIIVAKSDA 290

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 291 EVFNPDFAEKFDIVIADLPCTGF 313


>gi|254168426|ref|ZP_04875271.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289595799|ref|YP_003482495.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
 gi|197622707|gb|EDY35277.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289533586|gb|ADD07933.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
          Length = 311

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 12/76 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF------PNTLIFGDI 56
            I D+F G G   +       ++ V+  ++ +INPY+++  + N         T I GD 
Sbjct: 164 TIFDMFAGCGPFSI---LIAKYKKVK-IYACDINPYAIEYLEENIKMNKVKGITPILGDA 219

Query: 57  AKIKTQDIPDHDVLLA 72
             +  ++I   D ++ 
Sbjct: 220 RDV-AKEI-KADRIIM 233


>gi|224982996|gb|ACN73414.1| c-5 cytosine specific DNA methylase [Acinetobacter sp. NFM2]
          Length = 441

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-IAKIKTQ 62
          I D F G GG    LE+ F  R ++   +   +P ++  ++ N P T  + + +  +   
Sbjct: 10 IVDNFAGGGGTSTGLERAFG-RPIDI--AINHDPKALAMHRVNHPLTKHYCESVWDVDPV 66

Query: 63 DIP---DHDVLLAGFPCQPFSQA 82
          +I       ++     C+  S+A
Sbjct: 67 EITGNQPVGLVWLSPDCKHHSKA 89


>gi|15828514|ref|NP_325874.1| CpG DNA methylase (cytosine-specific methyltransferase)
          [Mycoplasma pulmonis UAB CTIP]
 gi|14089456|emb|CAC13216.1| CPG DNA METHYLASE (CYTOSINE-SPECIFIC METHYLTRANSFERASE)
          [Mycoplasma pulmonis]
          Length = 296

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 52 IFGDIAKIKTQDIP-DHDVLLAGFPCQPFS 80
           F DI K+ +  IP D D+    FPCQ  S
Sbjct: 18 NFSDITKLNS--IPKDIDIFTYSFPCQDIS 45


>gi|153810847|ref|ZP_01963515.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
 gi|149833243|gb|EDM88325.1| hypothetical protein RUMOBE_01231 [Ruminococcus obeum ATCC 29174]
          Length = 184

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DLF G GGI   +E     R  E     E NP +    + N
Sbjct: 44 RFLDLFSGSGGI--GIEAL--SRGAESAVFVEKNPKACACIREN 83


>gi|85706642|ref|ZP_01037734.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius sp. 217]
 gi|85668700|gb|EAQ23569.1| modification methylase (Cytosine-specific methyltransferase
           [Roseovarius sp. 217]
          Length = 511

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKT---------YQANFP---- 48
           I DLF G GG+           H       S E    + +T         YQA       
Sbjct: 7   IVDLFAGPGGLGEGFASLVEDGHAPFRIGISVEKEASAHRTLALRAFLREYQALHGVLPE 66

Query: 49  -------NTLIFGDIAKIKTQDI-----------------------------PDHD--VL 70
                    +   D + +  +                                ++D  +L
Sbjct: 67  PFIDFHAGLVPEPDWSAVDAEAWQLAIDEARALELGTETAARAIDGAIAKLRKNYDDTIL 126

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S  G
Sbjct: 127 IGGPPCQAYSLVG 139


>gi|269961512|ref|ZP_06175875.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833741|gb|EEZ87837.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 199

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG  L  E        E     E+NP + +  Q N   +L   +I  + T 
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--ELVTMIELNPQAFQQLQKN-VTSLNANNIHVVNTD 116

Query: 63  DI 64
            I
Sbjct: 117 AI 118


>gi|149882798|ref|YP_001294777.1| probable DNA methylase [Microbacterium phage Min1]
 gi|148763429|gb|ABR10447.1| probable DNA methylase [Microbacterium phage Min1]
          Length = 317

 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 15/84 (17%)

Query: 5  TDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINP-YSV-KTYQANFPNTLIFGDIAK--I 59
           D F G+G G         +   +  + +   +  ++V +T  AN     I+ D+     
Sbjct: 8  VDHFAGVGWGF------ACHTLGIREYGA---DTAHAVIRTRSAN-GMRTIYRDVWSGLF 57

Query: 60 KTQDIPDHDVLLAGFPCQPFSQAG 83
              +P H + +A  PCQ FS AG
Sbjct: 58 DPSLVPAHRLYIASPPCQTFSMAG 81


>gi|170718850|ref|YP_001784027.1| C5 methylase (MAV1virus-like) [Haemophilus somnus 2336]
 gi|168826979|gb|ACA32350.1| putative C5 methylase (MAV1virus-like) [Haemophilus somnus 2336]
          Length = 252

 Score = 39.0 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 52 IFGDIAKIKT-QDIPDHDVLLAGFPCQPFSQA 82
          +FGD         +P  DV+LA  PC+ FS A
Sbjct: 56 LFGDNTLFNQLDSLPKPDVILASPPCESFSVA 87


>gi|118093593|ref|XP_001233695.1| PREDICTED: similar to DC3 [Gallus gallus]
          Length = 212

 Score = 39.0 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
            + DL CG G + +          + C    +I+  +++ + +N  +  +   D+ +   
Sbjct: 54  TVADLGCGCGMLSIG--SAMLGAGL-CVGF-DIDAEALEIFNSNLEDFELTNVDVVQCDV 109

Query: 62  QDIPD-----HDVLLAGFP 75
             +PD      D ++   P
Sbjct: 110 SSLPDSMSETFDTVIMNPP 128


>gi|302536303|ref|ZP_07288645.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302445198|gb|EFL17014.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 425

 Score = 38.6 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL CGIGG  L L +           + +++P +V   +AN    L   D+ +++  D
Sbjct: 133 VADLCCGIGGDALALARRGIR-----VLAVDLDPLTVAVARAN-AEALGLADLIEVREAD 186

Query: 64  IPDHDV 69
           +   DV
Sbjct: 187 VTAVDV 192


>gi|255079756|ref|XP_002503458.1| predicted protein [Micromonas sp. RCC299]
 gi|226518725|gb|ACO64716.1| predicted protein [Micromonas sp. RCC299]
          Length = 716

 Score = 38.6 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 7   LFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44
           LF GIGGI L L++  +          EI+ + V+  +
Sbjct: 634 LFTGIGGIELSLKRWIHW-----IMYCEIDTFCVEVLK 666


>gi|326922766|ref|XP_003207616.1| PREDICTED: methyltransferase-like protein 5-like isoform 1
           [Meleagris gallopavo]
          Length = 212

 Score = 38.6 bits (90), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-DIAKIKT 61
            + DL CG G + +          + C    +I+  +++ + +N  +  +   D+ +   
Sbjct: 54  TVADLGCGCGMLSIG--SAMLGAGL-CVGF-DIDAEALEIFNSNLEDFELTNVDVVQCDV 109

Query: 62  QDIPD-----HDVLLAGFP 75
             +PD      D ++   P
Sbjct: 110 SSLPDSMSETFDTVIMNPP 128


>gi|157878942|ref|XP_001687302.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438217|emb|CBZ11969.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 390

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+FCGIG   L L    N   +    + E NP S+   + N            + GD 
Sbjct: 233 VVDMFCGIGYFTLPLAMHGNVAAIH---ALEKNPDSIDFVKLNAVLNKVDHLIHPVCGDN 289

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
            ++  + +   D +L G    C+ F
Sbjct: 290 REVGEELLGKCDRVLMGYIPTCKSF 314


>gi|312136621|ref|YP_004003958.1| methyltransferase [Methanothermus fervidus DSM 2088]
 gi|311224340|gb|ADP77196.1| methyltransferase [Methanothermus fervidus DSM 2088]
          Length = 240

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGD 55
            + D+F GIG   + +     H   +  F+ EINP + K  + N            I GD
Sbjct: 93  TVVDMFAGIGYFSIPI---AVHSQPKKVFAIEINPTAFKYLKENIKLNKVEKKVFPILGD 149

Query: 56  IAKIKTQDIPDHDVLLAGF 74
             KI  +   D D ++ G+
Sbjct: 150 CGKIAPE--LDADRVIMGY 166


>gi|206579103|ref|YP_002239989.1| C-5 cytosine-specific DNA methylase [Klebsiella pneumoniae 342]
 gi|206568161|gb|ACI09937.1| C-5 cytosine-specific DNA methylase [Klebsiella pneumoniae 342]
          Length = 390

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIPDHD---------------- 68
          + +EI+P++ +  +         P  +    I  +   D+                    
Sbjct: 6  YYNEIDPFAAQWLRNLIAAGHIAPGEVDERSIEDVTPDDLRGFTQCHFFAGIGGWSYALR 65

Query: 69 ---------VLLAGFPCQPFSQAG 83
                   +     PCQPFS  G
Sbjct: 66 LAGWPDNRPIWTGSCPCQPFSSTG 89


>gi|331004263|ref|ZP_08327741.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
          str. F0167]
 gi|330411428|gb|EGG90840.1| RsmD family RNA methyltransferase [Lachnospiraceae oral taxon 107
          str. F0167]
          Length = 184

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI 52
            DLF G GGI   +E     R     +  +I+  +++  + N  +T +
Sbjct: 45 FLDLFAGSGGI--GIEAL--SRGAREAYFCDIDREAIQCIRQNLEHTKL 89


>gi|317157659|ref|XP_001826363.2| C-5 cytosine-specific DNA methylase [Aspergillus oryzae RIB40]
          Length = 2165

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)

Query: 27  VECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT----------QDIP-DHDVLLAGFP 75
               FS+EI PY  +    NF   L+F D+ ++K           + +P + D+L+AGF 
Sbjct: 139 FRHLFSAEIVPYKQRYIDNNFHPRLLFRDVTQLKDRVAQTAYGSLEKVPRNPDMLIAGFS 198

Query: 76  CQPFS 80
           C  FS
Sbjct: 199 CVDFS 203


>gi|227504424|ref|ZP_03934473.1| possible methyltransferase [Corynebacterium striatum ATCC 6940]
 gi|227199072|gb|EEI79120.1| possible methyltransferase [Corynebacterium striatum ATCC 6940]
          Length = 200

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ DLF G G   L LE     R  E     E +P +VK  Q N
Sbjct: 46 RVLDLFAGSG--ALGLEAA--SRGAEEVVLVESSPAAVKVIQHN 85


>gi|119193420|ref|XP_001247316.1| hypothetical protein CIMG_01087 [Coccidioides immitis RS]
          Length = 240

 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G+GG  +   ++   R     ++ E NP S++  + N          T   GD 
Sbjct: 77  VIDTFAGVGGNAIAFARSNKWRR---VYAIEKNPASLQCAKHNAKIYGVEDKITWFQGDC 133

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +D+  + V+ A  P
Sbjct: 134 FEILKTQLKDLAPYSVIFASPP 155


>gi|144575112|gb|AAZ43851.2| putative cytosine-specific methyltransferase [Mycoplasma synoviae
           53]
          Length = 416

 Score = 38.6 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 52  IFGDIAKIKTQDI--PDHDVLLAGFPCQPFSQA 82
            + DI K+  Q +     D+L   FPCQ  S A
Sbjct: 115 NYCDIKKVDGQILDENKIDLLTYSFPCQGLSVA 147


>gi|168023511|ref|XP_001764281.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684433|gb|EDQ70835.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 457

 Score = 38.6 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---------NFPNTLIF 53
           ++ +L+ G+G I L L  T   R V+C    E+N  +   ++          N   +   
Sbjct: 240 RVVELYAGVGAIGLSLAATRKCRVVKCV---EVNKEAKPVFERSLTRLPPSVNAEISWHC 296

Query: 54  GDIAKIKTQDIPDHDVLLAGFP 75
            D++      +   DV++   P
Sbjct: 297 ADVSVSPINWLEGSDVVIVDPP 318


>gi|187940130|gb|ACD39262.1| methyltransferase protein [Pseudomonas aeruginosa]
          Length = 253

 Score = 38.6 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +E +PY+ +  +         P  +    I  +   D+                    
Sbjct: 5  YYNEFDPYAAQWLRNLIAAGHIAPGDVDERSIEDVHPDDLKHYTQCHFFAGIGVWSLALR 64

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQP+S+AG
Sbjct: 65 RSGWPDDRPVWTGSCPCQPYSKAG 88


>gi|84489817|ref|YP_448049.1| methyltransferase [Methanosphaera stadtmanae DSM 3091]
 gi|84373136|gb|ABC57406.1| predicted methyltransferase [Methanosphaera stadtmanae DSM 3091]
          Length = 340

 Score = 38.6 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-------LIFGDI 56
           I D F GIG   +      + +N +  +S +INP + K  Q N            I GDI
Sbjct: 197 IIDFFAGIGSFPI---SIAHRKNAK-IYSVDINPEAYKYVQENIKLNKLVGTVIPIEGDI 252

Query: 57  AKI 59
            K+
Sbjct: 253 RKV 255


>gi|56479059|ref|YP_160648.1| modification methylase (cytosine-specific methyltransferase
          [Aromatoleum aromaticum EbN1]
 gi|56315102|emb|CAI09747.1| Modification methylase (Cytosine-specific methyltransferase
          [Aromatoleum aromaticum EbN1]
          Length = 538

 Score = 38.6 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 1  MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQ 44
          ++KI DLF G GG+         H + +   S+E+   +  T +
Sbjct: 15 IIKIVDLFAGPGGLGEGFSS---HSSFQIAVSAEMESSAHATLR 55



 Score = 35.1 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 69  VLLAGFPCQPFSQAG 83
           VL+ G PCQ +S  G
Sbjct: 139 VLIGGPPCQAYSLVG 153


>gi|126653150|ref|ZP_01725274.1| type II DNA modification methyltransferase Spn5252IP [Bacillus
          sp. B14905]
 gi|126590066|gb|EAZ84192.1| type II DNA modification methyltransferase Spn5252IP [Bacillus
          sp. B14905]
          Length = 48

 Score = 38.6 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
            D +  GFPCQ FS AG
Sbjct: 20 KVDNICGGFPCQAFSVAG 37


>gi|319764257|ref|YP_004128194.1| c-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          BC]
 gi|317118818|gb|ADV01307.1| C-5 cytosine-specific DNA methylase [Alicycliphilus denitrificans
          BC]
          Length = 686

 Score = 38.6 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 29/94 (30%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGDIAKI 59
          I D F G GG    LE+ F           +I    +P ++  +  N P TL        
Sbjct: 17 IIDNFAGGGGTSTGLEKAFGRP-------VDIAINHDPEALAMHAINHPRTLHLC----- 64

Query: 60 KTQDIPDHD-----------VLLAGFPCQPFSQA 82
            + +   D           ++     C+ FS+A
Sbjct: 65 --ESVWSVDPIRVTRNQPVALVWLSPDCKHFSKA 96


>gi|325681464|ref|ZP_08160990.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 8]
 gi|324106954|gb|EGC01244.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 8]
          Length = 292

 Score = 38.6 bits (90), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS----VKTYQANFPN-TLIFGDIAK 58
           + DL  G G I L LE+   H      ++ E +  +          N     L+ GD+  
Sbjct: 119 VADLCSGSGCIALALEK---HLKCREVWAVEKSEAAAGYLKDNLALNHSAVKLVMGDVLD 175

Query: 59  IKT-QDIPDHDVLLAGFP 75
             T   IP  D+++   P
Sbjct: 176 SDTANKIPAADLIVCNPP 193


>gi|154312053|ref|XP_001555355.1| hypothetical protein BC1G_06060 [Botryotinia fuckeliana B05.10]
 gi|150850710|gb|EDN25903.1| hypothetical protein BC1G_06060 [Botryotinia fuckeliana B05.10]
          Length = 1152

 Score = 38.6 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 48  PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           P     GDI           D+++ G PCQ +S+A
Sbjct: 682 PKMPAKGDI-----------DMIVGGPPCQGWSRA 705


>gi|154331559|ref|XP_001561597.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134058916|emb|CAM36743.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 390

 Score = 38.6 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+FCGIG   L L    N   +    + E NP S+   + N            + GD 
Sbjct: 233 VVDMFCGIGYFALPLAMHGNVAEIH---ALEKNPDSIDFVKLNAVLNRVGHLIHPVCGDN 289

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
            ++  + +   D +L G    C+ F
Sbjct: 290 REVGEELVGKCDRVLMGYIPTCKSF 314


>gi|24374531|ref|NP_718574.1| prophage LambdaSo, type II DNA modification methyltransferase,
          putative [Shewanella oneidensis MR-1]
 gi|24349120|gb|AAN56018.1|AE015737_16 prophage LambdaSo, type II DNA modification methyltransferase,
          putative [Shewanella oneidensis MR-1]
          Length = 557

 Score = 38.6 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +             S +I    +  ++  + AN P TL +     D
Sbjct: 5  IVDNFAGGGGASTGMAWALGR-------SVDIAINHDQDAIAMHSANHPETLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  ++        +      C+ FS+A
Sbjct: 58 VDPVQATAGKPVALAWFSPDCKHFSKA 84


>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 431

 Score = 38.6 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++  + A
Sbjct: 256 KVLDLCAAPGG--KTFNCAEVIDGF--VVACDINEHKLDILRENILRLGFDNIIVAKNDA 311

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 312 EVFNPDFAEKFDIVIADLPCTGF 334


>gi|282849500|ref|ZP_06258884.1| conserved domain protein [Veillonella parvula ATCC 17745]
 gi|282580437|gb|EFB85836.1| conserved domain protein [Veillonella parvula ATCC 17745]
          Length = 95

 Score = 38.6 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 18/86 (20%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAK 58
            I + F G GG  +   Q     N    + ++     +KT   N PN +  G   D   
Sbjct: 7  YTIFETFVGAGGSHIGFMQ----ENFRTVYVNDFIDDCLKTLVYNNPNLIEEGAYIDNTS 62

Query: 59 IKTQD-----------IPDHDVLLAG 73
          I   D           I + DV L G
Sbjct: 63 IDKIDAVALRNKLGVTIGEIDVFLGG 88


>gi|325118579|emb|CBZ54130.1| putative DNA methyltransferase 2 [Neospora caninum Liverpool]
          Length = 794

 Score = 38.2 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 17/65 (26%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC---FFSS------------EINPYSVKTYQANFP 48
           + + F GIGG+    ++        C    F+S            ++N  + + Y  NF 
Sbjct: 65  VFEFFSGIGGLHAGWDRAVEI--FNCASSAFASAVVLQAPVCRAYDVNATANQVYVHNFG 122

Query: 49  NTLIF 53
            +   
Sbjct: 123 LSPQH 127


>gi|213498012|emb|CAS84141.1| DNA (cytosine-5) methyltransferase [Nicotiana tomentosiformis]
          Length = 395

 Score = 38.2 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 37/102 (36%)

Query: 13 GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF---------------GD-- 55
          G+   L+++      +  ++ E    +   ++ N P   +F               GD  
Sbjct: 1  GLSEGLQRSGVS---DTKWAIEYEEPAGDAFKLNHPEAKVFIQNCNVILRAVMQKCGDAE 57

Query: 56 --IAKIKTQDIP---------------DHDVLLAGFPCQPFS 80
            I+  +  ++                  D +  G PCQ FS
Sbjct: 58 DCISTSEASELAAAMDENELNSLPLPGQVDFINGGPPCQGFS 99


>gi|322832506|ref|YP_004212533.1| C-5 cytosine-specific DNA methylase [Rahnella sp. Y9602]
 gi|321167707|gb|ADW73406.1| C-5 cytosine-specific DNA methylase [Rahnella sp. Y9602]
          Length = 665

 Score = 38.2 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG- 54
          +K  I D F G GG    +E            S +I    +  ++  +  N P TL +  
Sbjct: 1  MKEIIVDNFAGGGGASTGIEMATGR-------SVDIAINHDENAIAMHSTNHPETLHYCE 53

Query: 55 ---DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
             D+  I         +      C+ FS+A
Sbjct: 54 SVFDVDPIAATAGRPVGLAWFSPDCRHFSKA 84


>gi|145499550|ref|XP_001435760.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402895|emb|CAK68363.1| unnamed protein product [Paramecium tetraurelia]
          Length = 421

 Score = 38.2 bits (89), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           +K+ DLFCGIG   L   +     N +C  ++++NP        N     +   +  +  
Sbjct: 214 IKVLDLFCGIGPFSL---RIAKDLNAQCL-ANDLNPECYYYLLKNIIENKVQNQVTPLNM 269

Query: 62  Q 62
            
Sbjct: 270 D 270


>gi|283786285|ref|YP_003366150.1| prophage DNA cytosine methylase [Citrobacter rodentium ICC168]
 gi|282949739|emb|CBG89358.1| putative prophage DNA cytosine methylase [Citrobacter rodentium
          ICC168]
          Length = 575

 Score = 38.2 bits (89), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +  ++  ++ N P+TL +     D
Sbjct: 5  IVDNFAGGGGASTGIELAIGR-------SVDIAINHDENAIAMHKTNHPDTLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +  +         +      C+ FS+A
Sbjct: 58 VDPLAATGGNPVGLAWFSPDCRHFSKA 84


>gi|322487896|emb|CBZ23140.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 321

 Score = 38.2 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D+FCGIG   L L    N   +    + E NP S+   + N            + GD 
Sbjct: 164 VVDMFCGIGYFTLPLAMHGNVAAIH---ALEKNPDSIDFVKLNAVLNKVDHLIHPVCGDN 220

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
            ++  + +   D ++ G    C+ F
Sbjct: 221 REVGEELLGKCDRVVMGYIPTCKSF 245


>gi|297834636|ref|XP_002885200.1| methyltransferase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331040|gb|EFH61459.1| methyltransferase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 743

 Score = 38.2 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD---IAK 58
           L +  LF GIGG  + L++   H       S E    S    +  +  +   G+   I +
Sbjct: 619 LTVLSLFSGIGGAEIALDRLGIHLKG--VVSVESCGLSRNILKRWWQTSGQTGELVQIEE 676

Query: 59  IKTQDIPDHDVLL---AGFP---CQ 77
           IK+      + L+    GF    CQ
Sbjct: 677 IKSLTTKKLETLVQRFGGFDFVICQ 701


>gi|48697223|ref|YP_024953.1| putative methyl transferase protein [Burkholderia phage BcepC6B]
 gi|47779029|gb|AAT38392.1| putative methyl transferase protein [Burkholderia phage BcepC6B]
          Length = 343

 Score = 38.2 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQ------ANFPNTLIFGDIAKIKTQDIP------------------- 65
          + +EI+P++ +  +            +    I  ++  D+                    
Sbjct: 5  YYNEIDPHAAQWLRNLIAAGHIAAGHVDERSIEDVQPDDLRGYSQCHFFAGIGVWSYALR 64

Query: 66 ------DHDVLLAGFPCQPFSQAG 83
                D  V     PCQPFS AG
Sbjct: 65 RAGWPDDRPVWTGSCPCQPFSAAG 88


>gi|261350337|ref|ZP_05975754.1| met-10+ protein [Methanobrevibacter smithii DSM 2374]
 gi|288861121|gb|EFC93419.1| met-10+ protein [Methanobrevibacter smithii DSM 2374]
          Length = 335

 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI 56
            I D+FCGIG   + + +   + NV    + +IN  ++K    N           I GDI
Sbjct: 188 NILDMFCGIGPFPVVIAK---NNNVNIT-AVDINKNAIKYLNENIRLNKLHNIEAICGDI 243

Query: 57  AKIKTQDIPDHDVLLA 72
            ++       +D ++ 
Sbjct: 244 NEVSKNLNKKYDRIIM 259


>gi|222445095|ref|ZP_03607610.1| hypothetical protein METSMIALI_00714 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434660|gb|EEE41825.1| hypothetical protein METSMIALI_00714 [Methanobrevibacter smithii
           DSM 2375]
          Length = 335

 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI 56
            I D+FCGIG   + + +   + NV    + +IN  ++K    N           I GDI
Sbjct: 188 NILDMFCGIGPFPVVIAK---NNNVNIT-AVDINKNAIKYLNENIRLNKLHNIEAICGDI 243

Query: 57  AKIKTQDIPDHDVLLA 72
            ++       +D ++ 
Sbjct: 244 NEVSKNLNKKYDRIIM 259


>gi|148642862|ref|YP_001273375.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
 gi|148551879|gb|ABQ87007.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
          Length = 335

 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI 56
            I D+FCGIG   + + +   + NV    + +IN  ++K    N           I GDI
Sbjct: 188 NILDMFCGIGPFPVVIAK---NNNVNIT-AVDINKNAIKYLNENIRLNKLHNIEAICGDI 243

Query: 57  AKIKTQDIPDHDVLLA 72
            ++       +D ++ 
Sbjct: 244 NEVSKNLNKKYDRIIM 259


>gi|291007578|ref|ZP_06565551.1| DNA modification methylase M.NGOI [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 308

 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 14 IRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKTQDIP---DHDV 69
          + + LE        +     + +  +  T + N P   +   D+ +    D P   D D+
Sbjct: 1  MAIGLEAA----GFDPVMLFDEDTDACATLRINRPTWDVREYDLFEFIGNDHPQVLDVDL 56

Query: 70 LLAGFPCQPFSQAG 83
               P  P+S AG
Sbjct: 57 FAGAPPRVPYSVAG 70


>gi|254383123|ref|ZP_04998477.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342022|gb|EDX22988.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 413

 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL CGIGG  L L +           + + +P +V   +AN    L   D+ +++  D
Sbjct: 101 VADLCCGIGGDALALARLGIR-----VLAVDRDPLTVAVARAN-AEALGLADLIEVREAD 154

Query: 64  IPDHD 68
           + + D
Sbjct: 155 VTEVD 159


>gi|29831531|ref|NP_826165.1| hypothetical protein SAV_4988 [Streptomyces avermitilis MA-4680]
 gi|29608647|dbj|BAC72700.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 390

 Score = 38.2 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL CGIGG  + L +           + + +P +    +AN    L   D+ +++  D
Sbjct: 101 VADLCCGIGGDAIALARAGIR-----VLAVDRDPLTAAVARAN-AGELGLTDLIEVREAD 154

Query: 64  IPDHD 68
           + + D
Sbjct: 155 VTEVD 159


>gi|283783534|ref|YP_003374288.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gardnerella vaginalis 409-05]
 gi|283441994|gb|ADB14460.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gardnerella vaginalis 409-05]
          Length = 304

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 2   LKITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
           L + DL  G G  G+ +  E           ++ E +P + +  Q NF  T
Sbjct: 121 LTVVDLCAGSGAIGLSIAAEVADAQ-----VWAVEKSPEAFQYLQKNFEET 166


>gi|159897859|ref|YP_001544106.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890898|gb|ABX03978.1| DNA-cytosine methyltransferase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 415

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 22/77 (28%)

Query: 26  NVECFFSSEINPYSVKTYQAN----FPNTLIFGD-------IAKIKTQDIP--------- 65
           N     + + N  +  +Y  N      N             + K+++ ++          
Sbjct: 30  NFRPLCAVDFNVDACTSYNMNMQWLHQNAPHLQTTQASKAYLRKVESLNVNAVKRLFQLQ 89

Query: 66  --DHDVLLAGFPCQPFS 80
             D D+L+ G PCQ +S
Sbjct: 90  QGDLDILMGGPPCQGYS 106


>gi|115525257|ref|YP_782168.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519204|gb|ABJ07188.1| DNA-cytosine methyltransferase [Rhodopseudomonas palustris BisA53]
          Length = 589

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 57/134 (42%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRN---VECFFSSEINPYSVKT-----YQANFPNT----- 50
           + D+F G GG+          R     +   S E +  + +T     +   FPN      
Sbjct: 81  VVDVFAGPGGLGEGFAALRGKRFSARFDSVVSIERDESAHQTLLLRHFLRRFPNQQFPDD 140

Query: 51  ---LIFGDIAKIKTQDI---------------------PDHDV----------------- 69
               + GDI      ++                     PD                    
Sbjct: 141 YYRYLRGDI---DCDELYRNHREEFGEAKKSALQISLGPDSHAEVKRIISRKLKGQQKWA 197

Query: 70  LLAGFPCQPFSQAG 83
           L+ G PCQ +S  G
Sbjct: 198 LVGGPPCQAYSIVG 211


>gi|325180235|emb|CCA14638.1| tRNA wybutosinesynthesizing protein putative [Albugo laibachii
           Nc14]
          Length = 854

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I DLFCGIG   L       H       + + NP ++   Q N
Sbjct: 691 IVDLFCGIGYYVLPF---LVHGGASMVHACDWNPDAITALQYN 730


>gi|159897886|ref|YP_001544133.1| type II restriction-modification system DNA cytosine-specific
          methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890925|gb|ABX04005.1| type II restriction-modification system DNA cytosine-specific
          methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 78

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT-LIFGDIAKIK 60
          + +TDLFC  GG    +             +       ++T   N P+T     DI    
Sbjct: 4  MTVTDLFCSAGGSSTGVVNA----GATVRMALNHWKLVIETNNMNHPDTDHDCTDIQACD 59

Query: 61 TQDIPDHDVLLAGFPC 76
           +  P   +L+A   C
Sbjct: 60 PRRYPRTTILIASPEC 75


>gi|239928909|ref|ZP_04685862.1| hypothetical protein SghaA1_11860 [Streptomyces ghanaensis ATCC
          14672]
 gi|291437236|ref|ZP_06576626.1| gp77 [Streptomyces ghanaensis ATCC 14672]
 gi|291340131|gb|EFE67087.1| gp77 [Streptomyces ghanaensis ATCC 14672]
          Length = 244

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-----IA 57
          ++ DLFC  GG  +   +     +       +I P      + N+P     GD       
Sbjct: 16 RLLDLFCCAGGAAVGYARAGFAVDG-----CDIAP------RPNYPFPYHHGDALAHLAR 64

Query: 58 KIKTQDIPDHDVLLAGFPCQ 77
           I++ +I  +  + A  PCQ
Sbjct: 65 LIESGEIRRYAFVHASPPCQ 84


>gi|188585811|ref|YP_001917356.1| ribosomal protein L11 methyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350498|gb|ACB84768.1| ribosomal protein L11 methyltransferase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 324

 Score = 38.2 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 3   KITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKT--YQANFPNTLIFGDIA-- 57
           K+ DL  G G GI   L        VE  F+ +I+  + +     AN        DI   
Sbjct: 190 KVIDL--GCGSGI---LSIAAAKLGVEKVFAYDIDSVACRVAGQNANLNEVRDLIDIKRG 244

Query: 58  KIKTQDIPD-HDVLLA 72
            +K Q + +  DV++ 
Sbjct: 245 DVKKQVVEEKADVVVG 260


>gi|326561616|gb|EGE11954.1| hypothetical protein E9M_05783 [Moraxella catarrhalis 46P47B1]
 gi|326572752|gb|EGE22738.1| hypothetical protein E9S_00345 [Moraxella catarrhalis BC7]
          Length = 46

 Score = 38.2 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 2  LKITDLFCGIGGIRLDLEQ 20
          + I  LF G GG+ L  ++
Sbjct: 1  MNIISLFSGCGGLDLGFKK 19


>gi|9630714|ref|NP_047260.1| putative C5 methylase MarMP [Mycoplasma phage MAV1]
 gi|193216971|ref|YP_002000213.1| bacteriophage MAV1 putative C5 methylase MarMP [Mycoplasma
          arthritidis 158L3-1]
 gi|3511247|gb|AAC33770.1| putative C5 methylase MarMP [Mycoplasma phage MAV1]
 gi|193002294|gb|ACF07509.1| bacteriophage MAV1 putative C5 methylase MarMP [Mycoplasma
          arthritidis 158L3-1]
          Length = 259

 Score = 38.2 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 41 KTYQANFPNTLIFGD--IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          K Y  +  +  I  D  I ++    +P  D++LA  PC+ +S A
Sbjct: 45 KNYFYHRIDLSILNDNLIQELN--KLPKPDIILASPPCESWSIA 86


>gi|145639873|ref|ZP_01795473.1| C-5 cytosine-specific DNA methylase [Haemophilus influenzae
          PittII]
 gi|145641713|ref|ZP_01797289.1| C-5 cytosine-specific DNA methylase [Haemophilus influenzae
          R3021]
 gi|145270964|gb|EDK10881.1| C-5 cytosine-specific DNA methylase [Haemophilus influenzae
          PittII]
 gi|145273527|gb|EDK13397.1| C-5 cytosine-specific DNA methylase [Haemophilus influenzae
          22.4-21]
          Length = 262

 Score = 38.2 bits (89), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y   F +  +F      +   +P  D+++A  PC+ +S A
Sbjct: 53 YGRMFGDNKLFD-----ELDKLPKPDLIIASPPCESWSVA 87


>gi|255261974|ref|ZP_05341316.1| RNA methyltransferase, RsmD family [Thalassiobium sp. R2A62]
 gi|255104309|gb|EET46983.1| RNA methyltransferase, RsmD family [Thalassiobium sp. R2A62]
          Length = 184

 Score = 38.2 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD--IAKIK 60
           ++ DLF G GG  L +E     R  E     +    ++   + N       GD  +  I 
Sbjct: 49  RVLDLFAGTGG--LGIEAL--SRGAESAVFVDNGRRALDLLKHNIGLLRREGDAVVIAID 104

Query: 61  TQDIP-----DHDVLLAGFP 75
              +P       D++L   P
Sbjct: 105 AASLPVNKGAACDLILLDPP 124


>gi|319948349|ref|ZP_08022493.1| hypothetical protein ES5_03271 [Dietzia cinnamea P4]
 gi|319437980|gb|EFV92956.1| hypothetical protein ES5_03271 [Dietzia cinnamea P4]
          Length = 195

 Score = 38.2 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          + DLF G G   L LE     R  +  +  E NP +V   + N
Sbjct: 47 VLDLFAGSG--ALGLEAL--SRGADTAWFVEENPRAVACLKKN 85


>gi|15679861|ref|NP_276979.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2623010|gb|AAB86339.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 352

 Score = 37.8 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY-----QANFPNTLI---FGD 55
           + D+F G G   + + +          ++ +INP +V+ Y     + N    +I    GD
Sbjct: 191 VLDMFAGAGPFAIAVARHGRASR---VYAVDINPAAVR-YIEENARLNHAEDVIVAVEGD 246

Query: 56  IAKI--KTQDIPDHDVL 70
           + +     +   DH ++
Sbjct: 247 VREFLRDRECFADHIIM 263


>gi|307546988|ref|YP_003899467.1| DNA-cytosine methyltransferase [Halomonas elongata DSM 2581]
 gi|307219012|emb|CBV44282.1| DNA-cytosine methyltransferase [Halomonas elongata DSM 2581]
          Length = 566

 Score = 37.8 bits (88), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69  VLLAGFPCQPFSQAG 83
           VL+ G PCQ +S AG
Sbjct: 124 VLIGGPPCQAYSVAG 138



 Score = 34.7 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 4  ITDLFCGIGGIRLDLE---QTFNHRNVECFFSSEINPYSVKTY 43
          I DLF G GG+        +    R  +   S E +  + +T 
Sbjct: 7  IVDLFAGPGGLGEGFSSIRRPDGSRQFKTLVSVEKDAAAHRTL 49


>gi|332558666|ref|ZP_08412988.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332276378|gb|EGJ21693.1| DNA-cytosine methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 510

 Score = 37.8 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 32/133 (24%), Gaps = 53/133 (39%)

Query: 4   ITDLFCGIGGIRLDLEQTF--NHRNVECFFSSEINPYSVKT---------YQANFPN--- 49
           I DLF G GG+           H       S E    + +T         Y A       
Sbjct: 7   IVDLFAGPGGLGEGFASLARDGHAPFRIGISVEKEASAHRTLTLRAFLREYMALHGTLPD 66

Query: 50  ---TLIFG-----DIAKIKTQDIPD-HD------------------------------VL 70
                  G     D + +  Q      D                              +L
Sbjct: 67  QFFEFHAGLETEPDWSAVDAQAWKHAVDEARALELGTEVAASAIDRAIESLKAGYDDTIL 126

Query: 71  LAGFPCQPFSQAG 83
           + G PCQ +S  G
Sbjct: 127 IGGPPCQAYSLVG 139


>gi|325115599|emb|CBZ51154.1| hypothetical protein NCLIV_042270 [Neospora caninum Liverpool]
          Length = 1119

 Score = 37.8 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
            + DLFCGIG   L          ++   + + N  +++ ++A
Sbjct: 849 TVVDLFCGIGYFSLAALTCAGVDRLKHLHACDWNRDALQFFEA 891


>gi|312959258|ref|ZP_07773776.1| DNA (cytosine-5-)-methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286518|gb|EFQ65081.1| DNA (cytosine-5-)-methyltransferase [Pseudomonas fluorescens WH6]
          Length = 741

 Score = 37.8 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
            DLF G GG  +  E       +    +   NP ++  ++ N P+   +  I  +
Sbjct: 187 VDLFAGGGGATMGQEMG---TGIPVDIAINHNPDAISMHKRNHPSAEHY--ITDV 236


>gi|241761120|ref|ZP_04759209.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374739|gb|EER64200.1| methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 183

 Score = 37.8 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
           L++ D+F G G   L LE              E +P + K  ++N        D      
Sbjct: 46  LRVADIFAGTG--ALGLESLSRGAAFS--LFVEQDPEACKILKSNIEKMGAQADTRLMAQ 101

Query: 56  -IAKIKTQDIPDHDVLLAGFP 75
            ++ +     P  D+LL   P
Sbjct: 102 PVSSLAPISQP-FDLLLFDPP 121


>gi|56551471|ref|YP_162310.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752917|ref|YP_003225810.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543045|gb|AAV89199.1| methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552280|gb|ACV75226.1| methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 183

 Score = 37.8 bits (88), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD------ 55
           L++ D+F G G   L LE              E +P + K  ++N        D      
Sbjct: 46  LRVADIFAGTG--ALGLESLSRGAAFS--LFVEQDPEACKILKSNIEKMGAQADTRLMAQ 101

Query: 56  -IAKIKTQDIPDHDVLLAGFP 75
            ++ +     P  D+LL   P
Sbjct: 102 PVSSLAPISQP-FDLLLFDPP 121


>gi|323489479|ref|ZP_08094706.1| putative methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323396610|gb|EGA89429.1| putative methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 191

 Score = 37.8 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R ++    ++ +  +V+T QAN
Sbjct: 46 IDLFAGSGG--LGIEAL--SRGIDHVIFTDKDKRAVETIQAN 83


>gi|254172039|ref|ZP_04878715.1| Met-10+ like protein [Thermococcus sp. AM4]
 gi|214033935|gb|EEB74761.1| Met-10+ like protein [Thermococcus sp. AM4]
          Length = 331

 Score = 37.8 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDIA 57
           + D+F G+G   + L +       +  F+ ++NP++++  + N      +    I GD+ 
Sbjct: 185 VFDMFAGVGPYSILLAR-----KAKLVFAVDLNPWAIRYLEENIRLNKVYNVVPILGDVR 239

Query: 58  KI 59
           K+
Sbjct: 240 KV 241


>gi|196231143|ref|ZP_03130003.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
 gi|196224973|gb|EDY19483.1| conserved hypothetical protein [Chthoniobacter flavus Ellin428]
          Length = 161

 Score = 37.8 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLF G G   L +E              E +  +V   + N   T + GD+  +   
Sbjct: 20 RVLDLFAGSG--ALGIEALSRGAAAAT--FVESDRRAVAAIEKNLERTKLTGDVQPVDVF 75

Query: 63 DIPD-------HDVLLAGFP 75
             D        D++LA  P
Sbjct: 76 RFLDRLVGAGSFDLILADPP 95


>gi|326673745|ref|XP_003199977.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Danio
           rerio]
          Length = 408

 Score = 37.8 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA--------NFPNTLIFG 54
            + DL+ GIG   L       H N     + E NP +V   Q         N   T+  G
Sbjct: 220 TVVDLYAGIGYFTLPY---LVHANAAHVHACEWNPDAVAALQKSLEINGVSNRC-TVHQG 275

Query: 55  DIAKIKTQDIPD 66
           D  ++   D+ D
Sbjct: 276 DNRQLSLSDLAD 287


>gi|229018524|ref|ZP_04175384.1| Modification methylase, HemK [Bacillus cereus AH1273]
 gi|228742765|gb|EEL92905.1| Modification methylase, HemK [Bacillus cereus AH1273]
          Length = 258

 Score = 37.8 bits (88), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---NFPNTLIFGDIAKIK 60
           I DL CG G +   L            +S +I+P +V+       NF      GD+ K  
Sbjct: 93  IVDLCCGSGAVGAALASALGRVE---LYSVDIDPIAVQCASRNVTNFGGHAFEGDLYKAL 149

Query: 61  TQDIPDH-DVLLAGFP 75
              +  H ++L+A  P
Sbjct: 150 PDSLKGHVNILVANVP 165


>gi|254420522|ref|ZP_05034246.1| C-5 cytosine-specific DNA methylase superfamily [Brevundimonas sp.
           BAL3]
 gi|196186699|gb|EDX81675.1| C-5 cytosine-specific DNA methylase superfamily [Brevundimonas sp.
           BAL3]
          Length = 598

 Score = 37.8 bits (88), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 8   FCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQDIPD 66
           F G GG     +             +  N  ++  +Q NFP+T  +  D+  +  + I  
Sbjct: 36  FAGAGGSSEAYKMALGKHPD--VALN-HNATALAVHQVNFPDTEHYVADVFDVDPRHIRP 92

Query: 67  HDVL---LAGFPCQPFSQA 82
                   A   C+ FS+A
Sbjct: 93  GVKWRSFWASPDCRHFSKA 111


>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]
          Length = 558

 Score = 37.8 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 18/79 (22%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
           I DLFCG G  G+ L   +  +    E        P ++   + N         T + GD
Sbjct: 407 ILDLFCGTGTIGLTLA-RRAKHVYGYEVV------PEAIADAKKNAKLNGISNATFVQGD 459

Query: 56  IAKIKT---QDIPDHDVLL 71
           + KI     ++ P  D+++
Sbjct: 460 LNKINETFGKEFPKPDIII 478


>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]
          Length = 624

 Score = 37.8 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 18/79 (22%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
           I DLFCG G  G+ L   +  +    E        P ++   + N         T + GD
Sbjct: 473 ILDLFCGTGTIGLTLA-RRAKHVYGYEVV------PEAIADAKKNAKLNGISNATFVQGD 525

Query: 56  IAKIKT---QDIPDHDVLL 71
           + KI     ++ P  D+++
Sbjct: 526 LNKINETFGKEFPKPDIII 544


>gi|307331070|ref|ZP_07610199.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306883281|gb|EFN14338.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 393

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
           ++ DL CGIGG  + L +T          + + +P +    +AN           +   D
Sbjct: 103 RMADLCCGIGGDAIALARTGIS-----VLAVDRDPLTCAVARANAQALGLAELIEIRCAD 157

Query: 56  IAKIKTQDI 64
           +  I T+  
Sbjct: 158 VTDIDTRPF 166


>gi|307258744|ref|ZP_07540476.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306867095|gb|EFM98951.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
          Length = 244

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 53 FGDIAKIKTQD-IPDHDVLLAGFPCQPFSQA 82
          FGD     T D +P  D+++A  PC+ +S A
Sbjct: 39 FGDNTLFDTLDKLPQPDLIIASPPCESWSVA 69


>gi|25026603|ref|NP_736657.1| hypothetical protein CE0047 [Corynebacterium efficiens YS-314]
 gi|259508264|ref|ZP_05751164.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23491882|dbj|BAC16857.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164152|gb|EEW48706.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 604

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA-----NFPNTLIFGDIA 57
            + D  CG GG    +   F    ++    ++IN  ++ T QA     N+  T    DI 
Sbjct: 173 TVLDFACGAGGTLQAIHHRFPEATLQ---GNDINATALATAQARAIPGNWTATWTHRDI- 228

Query: 58  KIKTQDIP--DHDVLLAGFP 75
            I+   +P    D++ +  P
Sbjct: 229 -IEAGALPADSFDLVCSNPP 247


>gi|318085426|gb|ADV39895.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica]
          Length = 273

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 124 LSVCSLFHGGGVLDKAIHAGFHKAGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 183

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 184 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 214


>gi|296491874|ref|YP_003662339.1| putative DNA (cytosine-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
 gi|289176759|emb|CBJ92924.1| putative DNA (cytosine-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 575

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 158 LSVCSLFHGGGVLDKAIHAGFHKAGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 217

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 218 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 248


>gi|258624119|ref|ZP_05719069.1| C-5 cytosine-specific DNA methylase [Vibrio mimicus VM603]
 gi|258583550|gb|EEW08349.1| C-5 cytosine-specific DNA methylase [Vibrio mimicus VM603]
          Length = 333

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 124 LSVCSLFHGGGVLDKAIHAGFHKAGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 183

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 184 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 214


>gi|163644909|gb|ABY28346.1| putative C-5 cytosine-specific DNA methylase [Vibrio cholerae O139]
          Length = 285

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 124 LSVCSLFHGGGVLDKAIHAGFHKAGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 183

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 184 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 214


>gi|118601986|ref|YP_908686.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|118614724|ref|YP_908507.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|134044487|ref|YP_001101821.1| C-5 cytosine-specific DNA methylase [Yersinia ruckeri]
 gi|134044859|ref|YP_001102203.1| C-5 cytosine-specific DNA methylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|134047248|ref|YP_001101999.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|165937989|ref|ZP_02226549.1| cytosine-specific DNA methylase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229516190|ref|ZP_04405639.1| site-specific DNA methylase [Vibrio cholerae RC9]
 gi|237640283|ref|YP_002891138.1| Dcm [Escherichia coli]
 gi|237810027|ref|YP_002894466.1| Dcm [Escherichia coli]
 gi|237810223|ref|YP_002894662.1| Dcm [Salmonella enterica]
 gi|118596815|dbj|BAF38119.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|118596995|dbj|BAF38298.1| cytosine-specific DNA methylase [Photobacterium damselae subsp.
           piscicida]
 gi|133904850|gb|ABO40867.1| C-5 cytosine-specific DNA methylase [Yersinia ruckeri]
 gi|133905167|gb|ABO41182.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|133905393|gb|ABO42155.1| C-5 cytosine-specific DNA methylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165914012|gb|EDR32629.1| cytosine-specific DNA methylase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229346840|gb|EEO11809.1| site-specific DNA methylase [Vibrio cholerae RC9]
 gi|229561502|gb|ACQ77705.1| Dcm [Escherichia coli]
 gi|229561707|gb|ACQ77909.1| Dcm [Salmonella enterica]
 gi|229561882|gb|ACQ78083.1| Dcm [Escherichia coli]
 gi|324008172|gb|EGB77391.1| C-5 cytosine-specific DNA methylase [Escherichia coli MS 57-2]
 gi|327536569|gb|AEA95402.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Dublin]
 gi|332144438|dbj|BAK19658.1| C-5 cytosine-specific DNA methylase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 541

 Score = 37.8 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 124 LSVCSLFHGGGVLDKAIHAGFHKAGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 183

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 184 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 214


>gi|229024782|ref|ZP_04181218.1| Modification methylase, HemK [Bacillus cereus AH1272]
 gi|228736493|gb|EEL87052.1| Modification methylase, HemK [Bacillus cereus AH1272]
          Length = 232

 Score = 37.8 bits (88), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA---NFPNTLIFGDIAKIK 60
           I DL CG G +   L            +S +I+P +V+       NF      GD+ K  
Sbjct: 67  IVDLCCGSGAVGAALASALGRVE---LYSVDIDPIAVQCASRNVTNFGGHAFEGDLYKAL 123

Query: 61  TQDIPDH-DVLLAGFP 75
              +  H ++L+A  P
Sbjct: 124 PDSLKGHVNILVANVP 139


>gi|330723584|gb|AEC45954.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 397

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 49  NTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           +   + DI K++   IP D D+    FPCQ  SQ G
Sbjct: 116 DKKFYTDINKVQI--IPKDIDIFTYSFPCQDLSQQG 149


>gi|330830237|ref|YP_004393189.1| Modification methylase [Aeromonas veronii B565]
 gi|328805373|gb|AEB50572.1| Modification methylase [Aeromonas veronii B565]
          Length = 433

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 VLLAGFPCQPFSQAG 83
          VL+ G PCQ +S AG
Sbjct: 32 VLIGGPPCQAYSLAG 46


>gi|304372838|ref|YP_003856047.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309029|gb|ADM21509.1| Cytosine-specific methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 397

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 49  NTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
           +   + DI K++   IP D D+    FPCQ  SQ G
Sbjct: 116 DKKFYTDINKVQI--IPKDIDIFTYSFPCQDLSQQG 149


>gi|307254284|ref|ZP_07536124.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306862763|gb|EFM94717.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 259

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 53 FGDIAKIKTQD-IPDHDVLLAGFPCQPFSQA 82
          FGD     T D +P  D+++A  PC+ +S A
Sbjct: 54 FGDNTLFDTLDKLPQPDLIIASPPCESWSVA 84


>gi|113954400|ref|YP_730547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
 gi|113881751|gb|ABI46709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
          Length = 464

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI 56
           ++ D +CGIG I L +        +      EINP SV+  + N             GD+
Sbjct: 315 RLIDAYCGIGTISLPVAAA----GIGVVGL-EINPASVQQARQNAALNGLTDAKFEAGDV 369

Query: 57  AKIKTQDIPDHDVLLAGFP 75
           A + +  +PDHD L+   P
Sbjct: 370 ASLLSDYLPDHDALVVDPP 388


>gi|33600653|ref|NP_888213.1| modification methylase [Bordetella bronchiseptica RB50]
 gi|33568253|emb|CAE32165.1| modification methylase [Bordetella bronchiseptica RB50]
          Length = 644

 Score = 37.8 bits (88), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 19/89 (21%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
          + D+F G GG     EQ            +   P ++  ++ N P    +  D+ ++  +
Sbjct: 15 VVDIFAGGGGWSTAYEQATGQHVHIAINHN---PDALSMHEVNHPQAQHYIADVWEVCPR 71

Query: 63 DIPDHDVLLAGFP---------CQPFSQA 82
          +         G P         C   SQA
Sbjct: 72 E------ATGGMPVGWLHLSPDCTDHSQA 94


>gi|238821331|ref|YP_002925147.1| hypothetical protein PH10_gp14 [Streptococcus phage PH10]
 gi|238804913|emb|CAY56507.1| hypothetical protein [Streptococcus phage PH10]
          Length = 222

 Score = 37.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y+  F + ++F D+       +P  D+++A  PC+ +S A
Sbjct: 18 YKRLFGDNMLF-DV----LNKLPKPDLVIASPPCESWSNA 52


>gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
 gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
          Length = 187

 Score = 37.8 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 19/85 (22%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--------- 54
           + D+F G GG  +   ++ + +     ++ E +P +++  Q N     ++G         
Sbjct: 94  LVDVFAGAGGNTIAFARSGHWKR---VYAIEKDPATLRCAQHN---AEVYGVADKITWFQ 147

Query: 55  ----DIAKIKTQDIPDHDVLLAGFP 75
               DI K + +D+  + VL A  P
Sbjct: 148 GDCFDILKSQLKDLAPYSVLFASPP 172


>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 557

 Score = 37.8 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 18/79 (22%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------NTLIFGD 55
           I DLFCG G  G+ L   +  +    E        P ++   + N         T + GD
Sbjct: 406 ILDLFCGTGTIGLTLA-RRAKHVYGYEVV------PEAIADAKKNAKLNGISNATFVQGD 458

Query: 56  IAKIKT---QDIPDHDVLL 71
           + KI     ++ P  D+++
Sbjct: 459 LNKINETFGKEFPKPDIII 477


>gi|329848440|ref|ZP_08263468.1| C-5 cytosine-specific DNA methylase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328843503|gb|EGF93072.1| C-5 cytosine-specific DNA methylase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 618

 Score = 37.8 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 33/105 (31%)

Query: 7   LFCGIGGIRLDLEQTFNHRN-----VECFFSSEINPYSVKT------------------- 42
            FCGIG       +           + C    +++  ++                     
Sbjct: 15  FFCGIGMGAAGFNEGTARLGNLEARLRCIGGIDVDKDAIANFDRFAGVKGTCMDLFTLEQ 74

Query: 43  YQANFPNTLIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFS 80
           Y A        G       DI +    + P  D++    PC+ FS
Sbjct: 75  YIAFHGKAPPPGWREATPADIQRAAGFERP--DIVFLSAPCKGFS 117


>gi|299145703|ref|ZP_07038771.1| putative DNA cytosine-specific methylase [Bacteroides sp. 3_1_23]
 gi|298516194|gb|EFI40075.1| putative DNA cytosine-specific methylase [Bacteroides sp. 3_1_23]
          Length = 520

 Score = 37.4 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 37 PYSVKTYQANFPN-TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
            +V+T+  NFP       DI  +  +     D+L+    C   S A
Sbjct: 5  KLAVETHNTNFPEADHDCADIQAVDPRRYQSTDILITSPECTNHSLA 51


>gi|226329615|ref|ZP_03805133.1| hypothetical protein PROPEN_03524 [Proteus penneri ATCC 35198]
 gi|225202801|gb|EEG85155.1| hypothetical protein PROPEN_03524 [Proteus penneri ATCC 35198]
          Length = 134

 Score = 37.4 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 67 HDVLLAGFPCQPFSQAG 83
           D++  G PCQ FS AG
Sbjct: 47 VDLVSGGPPCQGFSMAG 63


>gi|159477134|ref|XP_001696666.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
           reinhardtii]
 gi|158282891|gb|EDP08643.1| cytosine-C5 specific DNA methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 1333

 Score = 37.4 bits (87), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN 36
            D+F G GG+   L Q+         ++ E +
Sbjct: 714 LDIFAGCGGLSEGLHQSGVSS---TLWAVEFD 742


>gi|332157651|ref|YP_004422930.1| hypothetical protein PNA2_0007 [Pyrococcus sp. NA2]
 gi|331033114|gb|AEC50926.1| hypothetical protein PNA2_0007 [Pyrococcus sp. NA2]
          Length = 330

 Score = 37.4 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D+F GIG   + L +      V   F+S++NP++++  + N
Sbjct: 186 VFDMFAGIGPFSILLAK-----KVRLVFASDLNPWAIRYLEEN 223


>gi|307294802|ref|ZP_07574644.1| C-5 cytosine-specific DNA methylase [Sphingobium chlorophenolicum
          L-1]
 gi|306879276|gb|EFN10494.1| C-5 cytosine-specific DNA methylase [Sphingobium chlorophenolicum
          L-1]
          Length = 332

 Score = 37.4 bits (87), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDI------PDHDVLLAGFPCQPFS 80
           +++P      + N        D+A +   D+       +  VL    PCQPFS
Sbjct: 7  VDLDPSCKHPLEENTGAKFEKRDVADVTADDLIGWFGDAEVRVLAGCAPCQPFS 60


>gi|228911354|ref|ZP_04075157.1| C-5 cytosine-specific DNA methylase [Bacillus thuringiensis IBL
          200]
 gi|228848291|gb|EEM93142.1| C-5 cytosine-specific DNA methylase [Bacillus thuringiensis IBL
          200]
          Length = 418

 Score = 37.4 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD-IAK 58
          I D FCG GG    +E            S +I    +P ++  ++ N P+T  + + + +
Sbjct: 10 IVDNFCGGGGASTGIEMATG-------LSVDIAINHDPAAIAMHRINHPDTEHYCESVWE 62

Query: 59 IKTQD 63
          +  ++
Sbjct: 63 VDPRE 67


>gi|111021210|ref|YP_704182.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodococcus
           jostii RHA1]
 gi|110820740|gb|ABG96024.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Rhodococcus jostii RHA1]
          Length = 262

 Score = 37.4 bits (87), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK-IK 60
           + DL CG G +   L +T +   +E  ++ +I+P +V+  + N P+   +  GD+ + + 
Sbjct: 99  VADLCCGSGAVGAALAETGD--GIE-LYAVDIDPAAVRCARRNVPDPGRVFEGDLYEPLP 155

Query: 61  TQDIPDHDVLLAGFP 75
           T      DVL+A  P
Sbjct: 156 TALRGGIDVLVANAP 170


>gi|47212795|emb|CAF96170.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 270

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 50 TLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQ 81
               DI K    +    D+++ G PC   S 
Sbjct: 42 VHDVRDITKKNIMEWGPFDLVIGGSPCNDLSI 73


>gi|315612388|ref|ZP_07887301.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
 gi|315315369|gb|EFU63408.1| C-5 cytosine-specific DNA methylase [Streptococcus sanguinis ATCC
          49296]
          Length = 222

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y+  F +  +F D+       +P  D+++A  PC+ +S A
Sbjct: 18 YKRLFGDNTLF-DV----LDKLPKPDLVIASPPCESWSNA 52


>gi|253999374|ref|YP_003051437.1| C-5 cytosine-specific DNA methylase [Methylovorus sp. SIP3-4]
 gi|253986053|gb|ACT50910.1| C-5 cytosine-specific DNA methylase [Methylovorus sp. SIP3-4]
          Length = 606

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF-GDIAKIKTQ 62
           I DLF G GG    ++             ++    ++  ++ N P+T  F  D+ ++  +
Sbjct: 22  IVDLFAGGGGKSEGIKIASGRNPDIAINHND---DALSMHRINHPDTRHFVADVFEVDPR 78

Query: 63  DI---PDHDVLLAGFPCQPFSQA 82
            +        L A   C   SQA
Sbjct: 79  TVTQGRPVGHLHASPDCTHHSQA 101


>gi|229541608|ref|ZP_04430668.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229326028|gb|EEN91703.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 468

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECFFSS 33
           K+ DLFCG+G   L   ++      +E   +S
Sbjct: 318 KMIDLFCGVGTFSLPFADRVGELAGIEIVETS 349


>gi|15292897|gb|AAK92819.1| unknown protein [Arabidopsis thaliana]
          Length = 710

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L +  LF GIGG  + L++   H       S E    S    +  +  +   G++ +I+ 
Sbjct: 589 LTVLSLFSGIGGAEIALDRLGIHLKG--VVSVESCGLSRNILKRWWQTSGQTGELVQIEE 646


>gi|18401465|ref|NP_566573.1| methyltransferase family protein [Arabidopsis thaliana]
 gi|30684462|ref|NP_850603.1| methyltransferase family protein [Arabidopsis thaliana]
 gi|23297499|gb|AAN12982.1| unknown protein [Arabidopsis thaliana]
 gi|222422929|dbj|BAH19451.1| AT3G17310 [Arabidopsis thaliana]
 gi|332642414|gb|AEE75935.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
 gi|332642415|gb|AEE75936.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 710

 Score = 37.4 bits (87), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L +  LF GIGG  + L++   H       S E    S    +  +  +   G++ +I+ 
Sbjct: 589 LTVLSLFSGIGGAEIALDRLGIHLKG--VVSVESCGLSRNILKRWWQTSGQTGELVQIEE 646


>gi|268325441|emb|CBH39029.1| conserved hypothetical protein, Met-10+ like-protein family
           [uncultured archaeon]
 gi|268325748|emb|CBH39336.1| conserved hypothetical protein, Met-10+ like-protein family
           [uncultured archaeon]
          Length = 367

 Score = 37.4 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIA 57
           I D+F G+G   +   Q           + +INP +++    N           I GD++
Sbjct: 193 IIDMFAGVGSFSI---QIAKRAPQSIVTAIDINPDAIRYLHENMEQNGVRNIEPIEGDVS 249

Query: 58  KI 59
            I
Sbjct: 250 GI 251


>gi|52549299|gb|AAU83148.1| predicted methyltransferase [uncultured archaeon GZfos26G2]
          Length = 367

 Score = 37.4 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDIA 57
           I D+F G+G   +   Q           + +INP +++    N           I GD++
Sbjct: 193 IIDMFAGVGSFSI---QIAKRAPQSIVTAIDINPDAIRYLHENMEQNGVRNIEPIEGDVS 249

Query: 58  KI 59
            I
Sbjct: 250 GI 251


>gi|46198867|ref|YP_004534.1| methyltransferase [Thermus thermophilus HB27]
 gi|55980897|ref|YP_144194.1| methyltransferase [Thermus thermophilus HB8]
 gi|46196490|gb|AAS80907.1| methyltransferase [Thermus thermophilus HB27]
 gi|55772310|dbj|BAD70751.1| methyltransferase [Thermus thermophilus HB8]
          Length = 185

 Score = 37.4 bits (87), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DLF G G   + LE        E     E +P +V+  + N
Sbjct: 58 RFLDLFAGSG--AVGLEAA--SEGWEAVL-VEKDPEAVRLLKEN 96


>gi|307245331|ref|ZP_07527419.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306853672|gb|EFM85889.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 271

 Score = 37.4 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 53 FGDIAKIKTQD-IPDHDVLLAGFPCQPFSQA 82
          FGD     T D +P  D+++A  PC+ +S A
Sbjct: 66 FGDNTLFDTLDKLPQPDLIIASPPCESWSVA 96


>gi|221067990|ref|ZP_03544095.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
 gi|221068053|ref|ZP_03544158.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
 gi|220713013|gb|EED68381.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
 gi|220713076|gb|EED68444.1| C-5 cytosine-specific DNA methylase [Comamonas testosteroni KF-1]
          Length = 596

 Score = 37.4 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 31/110 (28%), Gaps = 33/110 (30%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRN-----VECFFSSEINPYS----------------- 39
           +K   LFCG+GG      +             C    +++  S                 
Sbjct: 6   IKHFHLFCGLGGGARGFNRASPRVGNLQARFRCIGGIDVDSASIRDFGRLTGVPGTVLDL 65

Query: 40  --VKTYQANFPNTLIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFS 80
              + Y+    +            DI +    + P    L A  PC+ FS
Sbjct: 66  FDREQYRTFHGSEPPADWHEATATDIQRAAGGERPHIVFLSA--PCKGFS 113


>gi|299144504|ref|ZP_07037583.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517592|gb|EFI41332.1| RNA methyltransferase, RsmD family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 181

 Score = 37.4 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
            + DLF G G   + +E  F  R  +  +  + +  ++ T   N        +   I + 
Sbjct: 44  NVLDLFSGSG--SIGIE--FLSRGAKFCYFVDNDKDAIDTINKNIKKAHCENNYKVILSG 99

Query: 63  DIPDHDVLLA 72
            +   D L  
Sbjct: 100 ALKVMDRLCG 109


>gi|328907996|gb|EGG27756.1| RNA methyltransferase, RsmD family [Propionibacterium sp. P08]
          Length = 202

 Score = 37.4 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DLF G G +   LE     R     F+ + + ++    + N
Sbjct: 57 FCDLFAGSGAM--ALEAA--SRGATTVFAVDRDRFACNVMRDN 95


>gi|313836633|gb|EFS74347.1| RNA methyltransferase, RsmD family [Propionibacterium acnes
          HL037PA2]
 gi|314928143|gb|EFS91974.1| RNA methyltransferase, RsmD family [Propionibacterium acnes
          HL044PA1]
 gi|314972141|gb|EFT16238.1| RNA methyltransferase, RsmD family [Propionibacterium acnes
          HL037PA3]
          Length = 170

 Score = 37.4 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DLF G G +   LE     R     F+ + + ++    + N
Sbjct: 25 FCDLFAGSGAM--ALEAA--SRGATTVFAVDRDRFACNVMRDN 63


>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 423

 Score = 37.4 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 248 KVIDLCAAPGG--KTFNCAEVIDGF--VVACDINDHKLDVLRENILRLGFDNIIVAKSDA 303

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 304 EVFNPDFAGRFDIVIADLPCTGF 326


>gi|326387633|ref|ZP_08209239.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207679|gb|EGD58490.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370]
          Length = 393

 Score = 37.4 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN 36
            + DL  G GG  L L     +R      + +I+
Sbjct: 206 TVIDLCAGAGGKTLALAAAMENRGR--LVACDID 237


>gi|196250365|ref|ZP_03149058.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
 gi|196210254|gb|EDY05020.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
          Length = 400

 Score = 37.4 bits (87), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 3   KITDLFCGIGGIRLDLEQTFNH-RNVECFFSSEINPYS-VKT 42
           K+ DLFCG+G   L   +       +E   +S   P +  KT
Sbjct: 317 KMIDLFCGVGTFSLPFAKRVKALAGIEIVETSSNQPNATRKT 358


>gi|313897986|ref|ZP_07831526.1| C-5 cytosine-specific DNA methylase [Clostridium sp. HGF2]
 gi|312957258|gb|EFR38886.1| C-5 cytosine-specific DNA methylase [Clostridium sp. HGF2]
          Length = 514

 Score = 37.4 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP-NTLIFGDIAKIKTQ 62
          I D F G GG    +E     R ++   +   +P +++ ++ N P    +   +  +   
Sbjct: 14 IVDNFAGGGGASTGIELALG-RPIDI--AINHDPDAIEMHKKNHPYTEHLCESVWDVDPV 70

Query: 63 DI---PDHDVLLAGFPCQPFSQA 82
           +       +      C  FS+A
Sbjct: 71 QVCRGRKIALAWFSPDCTHFSKA 93


>gi|242348041|ref|YP_002995602.1| C-5 cytosine-specific DNA methylase [Aeromonas hydrophila]
 gi|224831860|gb|ACN66991.1| C-5 cytosine-specific DNA methylase [Aeromonas hydrophila]
          Length = 541

 Score = 37.4 bits (87), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDI--- 56
           L +  LF G G +   +   F+   +      + E+    + +  AN P       I   
Sbjct: 124 LSVCSLFHGGGVLDKAIHAGFHKSGIASAISVAVEMEGKYLDSSLANNPELWNEDSIVIE 183

Query: 57  AKIKTQDI----PDHDVLLAGFPCQPFSQAG 83
           + I+  ++    P  DVL+ G PC   S++G
Sbjct: 184 SPIQAVNLSKRPPQVDVLMGGIPCTGASKSG 214


>gi|171464205|ref|YP_001798318.1| methyltransferase [Polynucleobacter necessarius subsp.
          necessarius STIR1]
 gi|171193743|gb|ACB44704.1| methyltransferase [Polynucleobacter necessarius subsp.
          necessarius STIR1]
          Length = 198

 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
          L+  DLF G G   L  E     R        E +  +     +NF
Sbjct: 51 LRCLDLFAGTG--ALGFEAA--SRGATLVVLLEKDKKACANLTSNF 92


>gi|115480860|ref|NP_001064023.1| Os10g0104900 [Oryza sativa Japonica Group]
 gi|113638632|dbj|BAF25937.1| Os10g0104900 [Oryza sativa Japonica Group]
          Length = 406

 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66 DHDVLLAGFPCQPFS 80
          D DV+  G PCQ  S
Sbjct: 2  DVDVICGGPPCQGIS 16


>gi|257075428|ref|ZP_05569789.1| DNA-cytosine methyltransferase [Ferroplasma acidarmanus fer1]
          Length = 386

 Score = 37.4 bits (87), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 50 TLIFGDIA-KIKTQDIPDHDVLLAGFPCQPFSQ 81
           +I  +I  K+K + I   DV++ G PCQ +S 
Sbjct: 63 EIIADEITDKMKLKGIHKVDVMIGGPPCQTYSV 95


>gi|149181899|ref|ZP_01860387.1| RNA methyltransferase [Bacillus sp. SG-1]
 gi|148850338|gb|EDL64500.1| RNA methyltransferase [Bacillus sp. SG-1]
          Length = 398

 Score = 37.4 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 3   KITDLFCGIGGIRLDLE-QTFNHRNVECFFSS 33
           K+ DLFCG+G   L    +      +E   SS
Sbjct: 318 KMIDLFCGVGTFSLPFANRVGELAGIEIVESS 349


>gi|301118196|ref|XP_002906826.1| tRNA wybutosine-synthesizing protein, putative [Phytophthora
           infestans T30-4]
 gi|262108175|gb|EEY66227.1| tRNA wybutosine-synthesizing protein, putative [Phytophthora
           infestans T30-4]
          Length = 940

 Score = 37.4 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            I DLFCGIG   L       H       + E NP SV   + N
Sbjct: 778 TIVDLFCGIGYYVLPF---LVHGGASFVHACEWNPDSVAALRFN 818


>gi|153835199|ref|ZP_01987866.1| site-specific DNA methylase [Vibrio harveyi HY01]
 gi|148868309|gb|EDL67437.1| site-specific DNA methylase [Vibrio harveyi HY01]
          Length = 475

 Score = 37.4 bits (87), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 23/91 (25%)

Query: 4  ITDLFCGIGG----IRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG- 54
          + D F G GG    I L L +             +I    +P ++  ++ N P T  +  
Sbjct: 10 VVDNFAGGGGASTGISLGLNR-----------HVDIAINHDPEAIDMHKVNHPETEHYCE 58

Query: 55 ---DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
             D+  ++        +      C+ FS+A
Sbjct: 59 SVWDVDPVEACKGRPVGLAWFSPDCKHFSKA 89


>gi|290510874|ref|ZP_06550244.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777590|gb|EFD85588.1| DNA (cytosine-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 616

 Score = 37.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +  +V  ++ N P+TL +     D
Sbjct: 5  IVDNFAGGGGASTGIEMALGR-------SVDIAINHDENAVAMHRTNHPDTLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          ++           +      C+ FS+A
Sbjct: 58 VSPGAATSGKPVGLTWFSPDCRHFSKA 84


>gi|254303554|ref|ZP_04970912.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323746|gb|EDK88996.1| DNA (cytosine-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 492

 Score = 37.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 40  VKTYQANFP-NTLIFG-DIAKIKTQDI-PDHDVLLAGFPCQPFSQAG 83
            ++Y AN+  +   F  +++ +  +      D+ + G PCQ FS  G
Sbjct: 155 KQSYFANYDIDEENFHWNVSFLDGRQYTGKVDLFVGGSPCQSFSLVG 201


>gi|307258138|ref|ZP_07539888.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306863323|gb|EFM95256.1| C-5 cytosine-specific DNA methylase [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
          Length = 272

 Score = 37.4 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 53 FGDIAKIKTQD-IPDHDVLLAGFPCQPFSQA 82
          FGD     T D +P  D+++A  PC+ +S A
Sbjct: 66 FGDNTLFDTLDKLPQPDLIIASPPCESWSVA 96


>gi|241997936|ref|XP_002433611.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215495370|gb|EEC05011.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 324

 Score = 37.4 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
            + DL+ GIG   L       H       S E N  + +    N          T+ FGD
Sbjct: 142 TVVDLYAGIGYFTLPY---LVHAKARHIHSCEWNKDAAEALTKNLQLNGVEDRCTIHFGD 198

Query: 56  IAKIKTQDIPD 66
             K+  + + D
Sbjct: 199 CRKVCPEGVAD 209


>gi|119964526|ref|YP_946101.1| HemK family modification methylase [Arthrobacter aurescens TC1]
 gi|119951385|gb|ABM10296.1| putative modification methylase, HemK family [Arthrobacter
           aurescens TC1]
          Length = 294

 Score = 37.4 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKIK 60
           + DL CG G I   L        +    +++I+P +V+  + N      T+  GD+    
Sbjct: 131 VVDLCCGSGAIGAALNDLLGSCELH---AADIDPAAVQCARRNVEPRGGTVHHGDLYGAL 187

Query: 61  TQDIP-DHDVLLAGFP 75
            +++    D+LLA  P
Sbjct: 188 PRELRGKVDILLANAP 203


>gi|320009044|gb|ADW03894.1| hypothetical protein Sfla_2465 [Streptomyces flavogriseus ATCC
           33331]
          Length = 404

 Score = 37.4 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL CGIGG  + L +           + + +P + +  +AN    L   D+ +++  D
Sbjct: 111 VADLCCGIGGDAIALARAGIS-----VLAVDRDPLTARVARAN-AEALGLQDLVEVRCAD 164

Query: 64  IPDHD 68
           + + D
Sbjct: 165 VTEID 169


>gi|242765200|ref|XP_002340926.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218724122|gb|EED23539.1| SNF2 family helicase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2138

 Score = 37.4 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 19  EQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-DH 67
           + +    + +  FS+EI  +     + NF   ++F D+ ++  +           +P   
Sbjct: 172 KMSIGPFSFKQLFSAEIVEHKQAYIERNFHPPILFRDVLELSKEFATTAYGAKKKVPTQP 231

Query: 68  DVLLAGFPCQPFSQ 81
           D+L+ GFPC  +S 
Sbjct: 232 DLLIVGFPCVDYSM 245


>gi|319777659|ref|YP_004137310.1| c-5 cytosine-specific DNA methylase [Mycoplasma fermentans M64]
 gi|238809483|dbj|BAH69273.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038734|gb|ADV34933.1| C-5 cytosine-specific DNA methylase [Mycoplasma fermentans M64]
          Length = 266

 Score = 37.0 bits (86), Expect = 0.75,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          IP  D+++A  PC+ +S+A
Sbjct: 65 IPKPDIIIASPPCESWSRA 83


>gi|238894201|ref|YP_002918935.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238546517|dbj|BAH62868.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
          Length = 656

 Score = 37.0 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFG----D 55
          I D F G GG    +E            S +I    +  +V  ++ N P+TL +     D
Sbjct: 5  IVDNFAGGGGASTGIEMAIGR-------SVDIAINHDENAVAMHRTNHPDTLHYCESVFD 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          ++           +      C+ FS+A
Sbjct: 58 VSPGAATSGKPVGLTWFSPDCRHFSKA 84


>gi|154324226|ref|XP_001561427.1| hypothetical protein BC1G_00512 [Botryotinia fuckeliana B05.10]
 gi|150842741|gb|EDN17934.1| hypothetical protein BC1G_00512 [Botryotinia fuckeliana B05.10]
          Length = 190

 Score = 37.0 bits (86), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 19/86 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIK 60
            I DLF G GG  +    +    +     + E +P  +   + N     ++G  +I  + 
Sbjct: 32  TIIDLFAGAGGNSIAFALSNRWAH---VIAIEKDPSVIACAENN---AYVYGATNITWVN 85

Query: 61  TQDI-----------PDHDVLLAGFP 75
                          P   V+ A  P
Sbjct: 86  GDCFEYLKTHASSINPSETVIFASPP 111


>gi|258597054|ref|XP_001347464.2| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|254922428|gb|AAN35377.2| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 1904

 Score = 37.0 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 3    KITDLFCGIGGIRLDLEQTFNHRN-VECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
             + DLFCG+G   L L +    +N +  +F+ +INP S+K  +     ++   +I K
Sbjct: 1649 NVVDLFCGVGYFTLPLLKCIEAQNKINNYFACDINPDSLKLLR----ESIKLNNINK 1701


>gi|167566476|ref|ZP_02359392.1| hypothetical protein BoklE_28219 [Burkholderia oklahomensis
          EO147]
          Length = 413

 Score = 37.0 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 67 HDVLLAGFPCQPFSQAG 83
           D ++AGFPCQ  S AG
Sbjct: 27 VDCVVAGFPCQDLSVAG 43


>gi|189218688|ref|YP_001939329.1| N6-adenine-specific methylase [Methylacidiphilum infernorum V4]
 gi|189185546|gb|ACD82731.1| N6-adenine-specific methylase [Methylacidiphilum infernorum V4]
          Length = 184

 Score = 37.0 bits (86), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG-----DIA 57
           K+ DLF G G   L +E   +   + C F  + +   ++  + N     + G     D+ 
Sbjct: 46  KVVDLFAGSG--SLGIE-ALSRGALSCTF-VDKSKECIECIKINLKKAHLEGIVILEDVY 101

Query: 58  KIKTQDIPDHDVLLAGFP 75
           K    D   +D++ A  P
Sbjct: 102 KFLKLDEAQYDLVFASPP 119


>gi|302671270|ref|YP_003831230.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302395743|gb|ADL34648.1| DNA-cytosine methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 579

 Score = 37.0 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 40  VKTYQANFP---NTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
             +Y AN+    +   +  IA +  +      D+ + G PCQ FS  G
Sbjct: 244 KASYTANYDIKEDDFHWN-IAFLDGKQYAGKVDLFVGGSPCQSFSFVG 290


>gi|226305913|ref|YP_002765873.1| hypothetical protein RER_24260 [Rhodococcus erythropolis PR4]
 gi|229491409|ref|ZP_04385233.1| RNA methyltransferase, RsmD family [Rhodococcus erythropolis
          SK121]
 gi|226185030|dbj|BAH33134.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
 gi|229321694|gb|EEN87491.1| RNA methyltransferase, RsmD family [Rhodococcus erythropolis
          SK121]
          Length = 188

 Score = 37.0 bits (86), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          + DLF G G   L LE     R  E     E +  +    +AN     + G
Sbjct: 47 VLDLFAGSG--ALGLEAL--SRGAEHVVLVESDAKAAAVIKANIGTVALPG 93


>gi|147801051|emb|CAN77847.1| hypothetical protein VITISV_020831 [Vitis vinifera]
          Length = 320

 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66  DHDVLLAGFPCQPFS 80
           D DV+  G PCQ  S
Sbjct: 184 DADVICGGPPCQGIS 198


>gi|14211981|gb|AAK57553.1| unknown [Methanococcus voltae]
          Length = 232

 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 17/81 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV----KTYQANFPN--------TL 51
           + D FCG G   L +      +  +    S+IN  ++       + NF           +
Sbjct: 117 VLDGFCGCG--TLGMVAL--KKGAKKVIFSDINKIALYDLEYNLKINFGEEIFENNKVEI 172

Query: 52  IFGDIAKIKTQDIPDHDVLLA 72
           I  D   +   ++P  D+LL 
Sbjct: 173 IHSDFMDLNFNNMPS-DILLG 192


>gi|11994548|dbj|BAB02735.1| unnamed protein product [Arabidopsis thaliana]
          Length = 751

 Score = 37.0 bits (86), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L +  LF GIGG  + L++   H       S E    S    +  +  +   G++ +I+ 
Sbjct: 630 LTVLSLFSGIGGAEIALDRLGIHLKG--VVSVESCGLSRNILKRWWQTSGQTGELVQIEE 687


>gi|328545736|ref|YP_004305845.1| phage DNA methyltransferase [polymorphum gilvum SL003B-26A1]
 gi|326415476|gb|ADZ72539.1| Phage DNA methyltransferase [Polymorphum gilvum SL003B-26A1]
          Length = 329

 Score = 37.0 bits (86), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 31/85 (36%)

Query: 30 FFSSEINPYSVKTYQANFP------NTLIFGDIAKIKTQDIP------------------ 65
           + ++ +P + +  +            +    I +++  D+                   
Sbjct: 3  VYYNDADPAACEWLRELIAARLLPAGEVDERSILEVEPADLRGFVQCHFFAGIGGWPYAL 62

Query: 66 -------DHDVLLAGFPCQPFSQAG 83
                 D  V     PCQPFSQAG
Sbjct: 63 RLAGVAEDLSVWTGSPPCQPFSQAG 87


>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 406

 Score = 37.0 bits (86), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 231 KVIDLCAAPGG--KTFNCAEVIDGF--VVACDINEHKLDILRENILRLGFDNIIVAKSNA 286

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           ++         D+++A  PC  F
Sbjct: 287 EVFNPDFAEKFDIVIADLPCTGF 309


>gi|323492925|ref|ZP_08098065.1| hypothetical protein VIBR0546_16066 [Vibrio brasiliensis LMG 20546]
 gi|323312818|gb|EGA65942.1| hypothetical protein VIBR0546_16066 [Vibrio brasiliensis LMG 20546]
          Length = 200

 Score = 37.0 bits (86), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E       +      E+NP + K  + N
Sbjct: 62  KCLDLFAGSGG--LGFEAASRQAEMVTL--IELNPSAFKQLEKN 101


>gi|269986188|gb|EEZ92500.1| protein of unknown function Met10 [Candidatus Parvarchaeum
          acidiphilum ARMAN-4]
          Length = 163

 Score = 37.0 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------FGDI 56
          ++ D+FCG+G   + + +   +       + +IN  +++  + N     I       GD 
Sbjct: 17 RVLDMFCGVGPFTIPIAKIAKN-----VTAIDINKNAIELLKKNIKLNKISNIDYYCGDS 71

Query: 57 AKIKTQDIPDHDVLLAGFP 75
           KI        D ++  FP
Sbjct: 72 KKITKSLEGKFDRVIMNFP 90


>gi|212528896|ref|XP_002144605.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210074003|gb|EEA28090.1| SNF2 family helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 2140

 Score = 37.0 bits (86), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 18  LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ----------DIP-D 66
           L++     + +  FS+EI  Y     + NF   L+F D  ++  +           +P  
Sbjct: 168 LKKLNIPFSFKHLFSAEIVEYKQAYIERNFRPPLLFRDAIELHREFAYTAYGAKRKVPTR 227

Query: 67  HDVLLAGFPCQPFS 80
            D+L+AGFPC  +S
Sbjct: 228 PDLLVAGFPCVDYS 241


>gi|329934923|ref|ZP_08284964.1| hypothetical protein SGM_0676 [Streptomyces griseoaurantiacus
          M045]
 gi|329305745|gb|EGG49601.1| hypothetical protein SGM_0676 [Streptomyces griseoaurantiacus
          M045]
          Length = 235

 Score = 37.0 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 16/82 (19%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD-----I 56
          L++ DLFC  GG  +   +     +       +I           +P     GD      
Sbjct: 9  LRVLDLFCCAGGAAMGYHRAGFQVDG-----CDIADRPR------YPFAYHRGDAPAYLA 57

Query: 57 AKIKTQDIPDHDVLLAGFPCQP 78
            I T +I  +  + A  PCQ 
Sbjct: 58 HLIDTGEIERYAFVHASPPCQS 79


>gi|319777303|ref|YP_004136954.1| c-5 cytosine-specific DNA methylase [Mycoplasma fermentans M64]
 gi|318038378|gb|ADV34577.1| C-5 cytosine-specific DNA methylase [Mycoplasma fermentans M64]
          Length = 154

 Score = 37.0 bits (86), Expect = 0.86,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          IP  D+++A  PC+ +S+A
Sbjct: 65 IPKPDIIIASPPCESWSRA 83


>gi|145590104|ref|YP_001156701.1| putative methyltransferase [Polynucleobacter necessarius subsp.
          asymbioticus QLW-P1DMWA-1]
 gi|145048510|gb|ABP35137.1| putative methyltransferase [Polynucleobacter necessarius subsp.
          asymbioticus QLW-P1DMWA-1]
          Length = 196

 Score = 37.0 bits (86), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
          L+  DLF G G   L  E      +       E +  +    + NF
Sbjct: 49 LRCLDLFAGTG--ALGFEAASRGASF--VALLEKDKKAHANLRTNF 90


>gi|298252616|ref|ZP_06976410.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis 5-1]
 gi|297532980|gb|EFH71864.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis 5-1]
          Length = 304

 Score = 37.0 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 3   KITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
            + DL  G G  G+ +  E           ++ E +P + +  Q NF  T
Sbjct: 122 TVVDLCAGSGAIGLSIAAEVADAQ-----VWAVEKSPEAFQYLQKNFEET 166


>gi|257870366|ref|ZP_05650019.1| DNA methylase [Enterococcus gallinarum EG2]
 gi|257804530|gb|EEV33352.1| DNA methylase [Enterococcus gallinarum EG2]
          Length = 248

 Score = 37.0 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 52 IFGDIAKIK-TQDIPDHDVLLAGFPCQPFSQA 82
          +FGD         +P+ D+++A  PC+ +S A
Sbjct: 51 LFGDNTLFDHLDSLPNPDLIIASPPCESWSVA 82


>gi|88706064|ref|ZP_01103772.1| C-5 cytosine-specific DNA methylase [Congregibacter litoralis
          KT71]
 gi|88699778|gb|EAQ96889.1| C-5 cytosine-specific DNA methylase [Congregibacter litoralis
          KT71]
          Length = 322

 Score = 37.0 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 33 SEINPYSVKTYQANFPNTLIFGDIAKIKTQDI------PDHDVLLAGFPCQPFS 80
           +++      Y+AN     +  D+A+    ++          +L    PCQPFS
Sbjct: 5  VDLDSACRYPYEANNEAVFVEKDVAEFTASELTALFGNARVKILAGCAPCQPFS 58


>gi|281491525|ref|YP_003353505.1| phage protein [Lactococcus lactis subsp. lactis KF147]
 gi|281491959|ref|YP_003353939.1| phage protein [Lactococcus lactis subsp. lactis KF147]
 gi|281375243|gb|ADA64756.1| Phage protein [Lactococcus lactis subsp. lactis KF147]
 gi|281375668|gb|ADA65172.1| Phage protein [Lactococcus lactis subsp. lactis KF147]
          Length = 257

 Score = 37.0 bits (86), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y   F N  +F          +P  D+++A  PC+ +S A
Sbjct: 50 YSRLFGNNQLFE-----TLDKLPHPDLIIASPPCESWSVA 84


>gi|167758115|ref|ZP_02430242.1| hypothetical protein CLOSCI_00453 [Clostridium scindens ATCC
          35704]
 gi|167664012|gb|EDS08142.1| hypothetical protein CLOSCI_00453 [Clostridium scindens ATCC
          35704]
          Length = 189

 Score = 37.0 bits (86), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DLF G GGI   +E   +  ++E  F  E NP ++   + N
Sbjct: 45 FLDLFAGSGGI--GIE-ALSRGSMETVF-VEKNPKAMACIKEN 83


>gi|282860871|ref|ZP_06269937.1| hypothetical protein SACTEDRAFT_0482 [Streptomyces sp. ACTE]
 gi|282564607|gb|EFB70143.1| hypothetical protein SACTEDRAFT_0482 [Streptomyces sp. ACTE]
          Length = 414

 Score = 37.0 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + DL CGIGG  + L +           + + +P + +  +AN           +   D+
Sbjct: 121 VADLCCGIGGDAIALARAGIS-----VLAVDRDPLTAQVARANAEALGLQDRIEVRCADV 175

Query: 57  AKIKT 61
            +I T
Sbjct: 176 TEIDT 180


>gi|237785783|ref|YP_002906488.1| putative DNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758695|gb|ACR17945.1| putative DNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 188

 Score = 37.0 bits (86), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
          ++ DLF G G   L LE     R  +     + +  +++T + N       GD+      
Sbjct: 45 RVLDLFAGSG--ALGLEAA--SRGADSVVFVDTDSAAIETIKDN---IRRVGDV------ 91

Query: 63 DIPDHDVL 70
             D DV+
Sbjct: 92 ---DADVV 96


>gi|284054848|ref|ZP_06385058.1| DNA-cytosine methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 220

 Score = 37.0 bits (86), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 69 VLLAGFPCQPFSQAG 83
          +++ G PCQPFS  G
Sbjct: 1  MIIGGPPCQPFSVGG 15


>gi|315146000|gb|EFT90016.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 266

 Score = 37.0 bits (86), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 43  YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
           Y   F +  +F    K+    +P  D+++A  PC+ +S A
Sbjct: 67  YSYMFNDNKLF----KV-LDKLPKPDLIIASPPCESWSVA 101


>gi|315651228|ref|ZP_07904258.1| ribosomal RNA small subunit methyltransferase D [Eubacterium
          saburreum DSM 3986]
 gi|315486524|gb|EFU76876.1| ribosomal RNA small subunit methyltransferase D [Eubacterium
          saburreum DSM 3986]
          Length = 184

 Score = 36.7 bits (85), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI 52
             D+F G GGI   +E     R  +  +  +I+  +V+  + N  +T +
Sbjct: 44 TFLDMFAGSGGI--GIEAL--SRGAKKAYFCDIDREAVECIKYNLSHTKL 89


>gi|239943647|ref|ZP_04695584.1| hypothetical protein SrosN15_21811 [Streptomyces roseosporus NRRL
           15998]
 gi|239990098|ref|ZP_04710762.1| hypothetical protein SrosN1_22528 [Streptomyces roseosporus NRRL
           11379]
 gi|291447112|ref|ZP_06586502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350059|gb|EFE76963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 408

 Score = 36.7 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + DL CGIGG  + L +           + + +P + +  +AN           +   D+
Sbjct: 117 VADLCCGIGGDAIALARAGIS-----VLAVDRDPLTAEVARANAEALGLAELIEVRCADV 171

Query: 57  AKIKT 61
            +I T
Sbjct: 172 TEIDT 176


>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
          Length = 1255

 Score = 36.7 bits (85), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNH-RNVECFF-SSEINPYSVKTYQAN--FPNTLIFGDIAKI 59
           + DLFCG G I L L +   H    E    +      + +  + N     T I GD+ KI
Sbjct: 400 VLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAV---SDARRNAKLNGICNATFIEGDLNKI 456

Query: 60  KTQ---DIPDHDVLL 71
                 D P  DV++
Sbjct: 457 GENFGKDFPKPDVVI 471


>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
 gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
          Length = 423

 Score = 36.7 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           K+ DL    GG                  + +IN + +   + N     F N ++    A
Sbjct: 248 KVLDLCAAPGG--KTFNCAEVIDGF--VVACDINDHKLDVLRENILRLGFDNIIVAKSDA 303

Query: 58  KI-KTQDIPDHDVLLAGFPCQPF 79
           +I         D+++A  PC  F
Sbjct: 304 EIFNPDFAGRFDIVIADLPCTGF 326


>gi|224368228|ref|YP_002602391.1| putative small methyltransferase [Desulfobacterium autotrophicum
           HRM2]
 gi|223690944|gb|ACN14227.1| putative small methyltransferase [Desulfobacterium autotrophicum
           HRM2]
          Length = 189

 Score = 36.7 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 20/86 (23%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGD 55
           ++ DLF G G   L LE    +         + +  +      N          T+I  D
Sbjct: 44  RVLDLFAGTG--ALGLEALSRNAGFAT--FVDNSREACTVINKNIALLQFEHCTTVIQHD 99

Query: 56  IA------KIKTQDIPDHDVLLAGFP 75
           +       +I+ +     D++    P
Sbjct: 100 LTRAGTLARIRPK---KFDLVFMDPP 122


>gi|308235423|ref|ZP_07666160.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gardnerella vaginalis ATCC 14018]
          Length = 306

 Score = 36.7 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----------TLI 52
           + DL  G G I   L       + +  ++ E +P + +  Q N+               I
Sbjct: 127 VLDLCAGSGAI--GLSVASEVADAQ-VWAVEKSPKAFEYLQKNYNKIAEKYNILNRYHAI 183

Query: 53  FGDIAKIKTQD----IPDHDVLLAGFP 75
            GD   +   +        DV++   P
Sbjct: 184 LGDATNVNLPEKAAIKEKVDVVITNPP 210


>gi|311114830|ref|YP_003986051.1| protein-(glutamine-N5) methyltransferase [Gardnerella vaginalis
           ATCC 14019]
 gi|310946324|gb|ADP39028.1| protein-(glutamine-N5) methyltransferase [Gardnerella vaginalis
           ATCC 14019]
          Length = 302

 Score = 36.7 bits (85), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 18/87 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----------TLI 52
           + DL  G G I   L       + +  ++ E +P + +  Q N+               I
Sbjct: 123 VLDLCAGSGAI--GLSVASEVADAQ-VWAVEKSPKAFEYLQKNYNKIAEKYNILNRYHAI 179

Query: 53  FGDIAKIKTQD----IPDHDVLLAGFP 75
            GD   +   +        DV++   P
Sbjct: 180 LGDATNVNLPEKAAIKEKVDVVITNPP 206


>gi|307289827|ref|ZP_07569762.1| hypothetical protein HMPREF9509_00144 [Enterococcus faecalis
          TX0411]
 gi|306499118|gb|EFM68598.1| hypothetical protein HMPREF9509_00144 [Enterococcus faecalis
          TX0411]
          Length = 246

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y   F +  +F    K+    +P  D+++A  PC+ +S A
Sbjct: 48 YSYMFNDNKLF----KV-LDKLPKPDLIIASPPCESWSVA 82


>gi|224097291|ref|XP_002190665.1| PREDICTED: similar to tRNA methyltransferase 12 homolog
           [Taeniopygia guttata]
          Length = 408

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
           + DL+ GIG   L       H       + E N ++V+    
Sbjct: 206 VVDLYAGIGYFTLPF---LVHAGAAFVHACEWNSHAVEALHR 244


>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
 gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
          Length = 204

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +V+T + N
Sbjct: 52 LDLFAGSGG--LGIEAL--SRGIERVIFVDHDRKAVQTVRKN 89


>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
 gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
          Length = 204

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +V+T + N
Sbjct: 52 LDLFAGSGG--LGIEAL--SRGIERVIFVDHDRKAVQTVRKN 89


>gi|297159668|gb|ADI09380.1| hypothetical protein SBI_06260 [Streptomyces bingchenggensis BCW-1]
          Length = 395

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           ++ DL CGIGG  +   +           + + +P +    +AN
Sbjct: 103 RVADLCCGIGGDAVAFARAGI-----PVLAVDRDPLTCAVVRAN 141


>gi|159906053|ref|YP_001549715.1| RNA methyltransferase-like protein [Methanococcus maripaludis C6]
 gi|159887546|gb|ABX02483.1| RNA methyltransferase related protein [Methanococcus maripaludis
           C6]
          Length = 295

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK----TYQANFPNTLIFGDIAKI 59
           + D FCG G   L L      +  +    S+INP+++K      + NF   +      +I
Sbjct: 200 VIDGFCGSG--TLGL--AALKKGAKKVIFSDINPHALKDVIYNLKLNFSKEVFER--IEI 253

Query: 60  KTQDIPDHDVL 70
              D  + DV+
Sbjct: 254 INSDFLNLDVI 264


>gi|326532950|dbj|BAJ89320.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------- 54
           L++  ++ G+GG  + L +      ++C  S E +  + K  +  +  T   G       
Sbjct: 388 LRVLSIYSGVGGAEVALHRLG--IPLKCVVSIEESDVNRKILKRWWAKTEQSGVLRQLPG 445

Query: 55  ------DIAKIKTQDIPDHDVLLAG 73
                 D+ +   ++    D+++ G
Sbjct: 446 IWKLKTDVLEDLFKEFGGFDLVVGG 470


>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
 gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
          Length = 198

 Score = 36.7 bits (85), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +V+T + N
Sbjct: 46 LDLFAGSGG--LGIEAL--SRGIERVIFVDHDRKAVQTVRKN 83


>gi|153939582|ref|YP_001391675.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum F str.
          Langeland]
 gi|152935478|gb|ABS40976.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum F str.
          Langeland]
 gi|295319706|gb|ADG00084.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum F str.
          230613]
          Length = 476

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 2  LK--ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD 55
          +K  I D F G GG    +E            S +I    +P ++  ++ N P T  + +
Sbjct: 1  MKELIIDNFAGGGGASTGIELATGR-------SVDIAINHDPAAILMHKTNHPATKHYCE 53

Query: 56 -IAKIKTQDI---PDHDVLLAGFPCQPFSQA 82
           + ++   +        +      C+ FS+A
Sbjct: 54 SVWEVDPVEAVGNNKVALAWFSPDCKHFSKA 84


>gi|302384869|ref|YP_003820691.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium saccharolyticum WM1]
 gi|302195497|gb|ADL03068.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium saccharolyticum WM1]
          Length = 288

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 1   MLKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           M KI DL  G G I + L +       +   +++I+  ++   + N    L  G I  +K
Sbjct: 119 MPKILDLCTGSGCIAISLAKLG---GFDRVTAADISEEALLVAERNAGKHLGEGRITLVK 175

Query: 61  TQDI------PDHDVLLAGFP 75
           +            DV+++  P
Sbjct: 176 SDLFEAFKNQRTFDVIVSNPP 196


>gi|297192642|ref|ZP_06910040.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723134|gb|EDY67042.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 424

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + DL  GIGG  + L +           + + +P + +  +AN           +   D+
Sbjct: 137 VADLCSGIGGDAIALARAGIS-----VLAVDRDPLTAEVARANAEALGLSGLVEVRCADV 191

Query: 57  AKIKTQ 62
             I T 
Sbjct: 192 TDIDTS 197


>gi|163803407|ref|ZP_02197282.1| hypothetical protein 1103602000602_AND4_16474 [Vibrio sp. AND4]
 gi|159172811|gb|EDP57656.1| hypothetical protein AND4_16474 [Vibrio sp. AND4]
          Length = 206

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG  L  E        E     E+NP + +  Q N   +L   +I  + T 
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--EQVTMIELNPQAFQQLQKN-VASLNANNIQIVNTD 116

Query: 63  DI 64
            I
Sbjct: 117 AI 118


>gi|71747010|ref|XP_822560.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70832228|gb|EAN77732.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 394

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + D+F GIG   L L     +  V+   + E N YS      N           +  GD 
Sbjct: 231 VVDMFAGIGYFTLPL---AINGGVKIVHALEKNKYSALYLAFNAVQNKVSDLIVIHCGDN 287

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
             + ++     D ++ G    C+ F
Sbjct: 288 RDVGSELCGRCDRVIMGYIPSCESF 312


>gi|163858288|ref|YP_001632586.1| putative N6-adenine-specific methyltransferase [Bordetella petrii
           DSM 12804]
 gi|163262016|emb|CAP44318.1| putative N6-adenine-specific methyltransferase [Bordetella petrii]
          Length = 220

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
           ++ DLF G G   L  E     R        E +  +V   +A
Sbjct: 85  RVLDLFAGSG--ALGFEAA--SRGATQVLLVEHDRTAVAALRA 123


>gi|331085068|ref|ZP_08334155.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330408768|gb|EGG88233.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 189

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          +  DLF G GGI   +E        E  F  E NP ++   + N   T + 
Sbjct: 44 RFLDLFAGSGGI--GIEALSRGAG-EAVF-VEQNPKAMACIKENLKKTKLE 90


>gi|325661177|ref|ZP_08149804.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472684|gb|EGC75895.1| RsmD family RNA methyltransferase [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 189

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIF 53
          +  DLF G GGI   +E        E  F  E NP ++   + N   T + 
Sbjct: 44 RFLDLFAGSGGI--GIEALSRGAG-EAVF-VEQNPKAMACIKENLKKTKLE 90


>gi|212529036|ref|XP_002144675.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
 gi|210074073|gb|EEA28160.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
          Length = 242

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   ++   +     ++ E NP  +   + N          T   GD 
Sbjct: 78  LIDAFAGAGGNSIAFAKSGRWKR---VYAIEKNPAVLTCAKHNAKIYGVESKITWFEGDC 134

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K   +D+  + V+ A  P
Sbjct: 135 FEILKTHLKDLGPYSVVFASPP 156


>gi|70991803|ref|XP_750750.1| RNA methylase family protein [Aspergillus fumigatus Af293]
 gi|66848383|gb|EAL88712.1| RNA methylase family protein, putative [Aspergillus fumigatus
           Af293]
 gi|159124312|gb|EDP49430.1| RNA methylase family protein, putative [Aspergillus fumigatus
           A1163]
          Length = 238

 Score = 36.7 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   +T   +     ++ E NP  ++  + N          T   GD 
Sbjct: 78  LVDAFAGAGGNTIAFARTGKWKR---VYAIEKNPAVLQCAKHNAQVYGVADKITWFEGDC 134

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +++  + V+ A  P
Sbjct: 135 FSILKNQLKELAPYSVIFASPP 156


>gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNH-RNVECFF-SSEINPYSVKTYQAN--FPNTLIFGDIAKI 59
           + DLFCG G I L L +   H    E    +      + +  + N     T I GD+ KI
Sbjct: 419 VLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAV---SDARRNAKLNGICNATFIEGDLNKI 475

Query: 60  KTQ---DIPDHDVLL 71
                 D P  DV++
Sbjct: 476 GENFGKDFPKPDVVI 490


>gi|238501564|ref|XP_002382016.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
 gi|220692253|gb|EED48600.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 252

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FP----NTLIFG 54
           + + D F G GG  +   ++   +     ++ E NP  ++  + N   +      T   G
Sbjct: 89  MVLVDAFAGAGGNTIAFARSGRWKR---VYAIEKNPAVLQCAKHNAKIYGVEDKITWFEG 145

Query: 55  D---IAKIKTQDIPDHDVLLAGFP 75
           D   I   + +D+  + VL A  P
Sbjct: 146 DSLQIVNNQLKDLGPYSVLFASPP 169


>gi|312899542|ref|ZP_07758870.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|311293311|gb|EFQ71867.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
          Length = 254

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y   F +  +F    K+    +P  D+++A  PC+ +S A
Sbjct: 55 YSYMFNDNKLF----KV-LDKLPKPDLIIASPPCESWSVA 89


>gi|254230124|ref|ZP_04923520.1| putative methyltransferase [Vibrio sp. Ex25]
 gi|151937369|gb|EDN56231.1| putative methyltransferase [Vibrio sp. Ex25]
          Length = 246

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E        E     E+NP + +  Q N
Sbjct: 109 KCLDLFAGSGG--LGFESASRQA--EQVTMVELNPQAFQQLQKN 148


>gi|91227503|ref|ZP_01261840.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269968644|ref|ZP_06182641.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91188527|gb|EAS74819.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269826731|gb|EEZ81068.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 199

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E        E     E+NP + +  Q N
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--EQVTMVELNPQAFQQLQKN 101


>gi|262392911|ref|YP_003284765.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
 gi|262336505|gb|ACY50300.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
          Length = 199

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E        E     E+NP + +  Q N
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--EQVTMVELNPQAFQQLQKN 101


>gi|224372530|ref|YP_002606902.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
 gi|223589616|gb|ACM93352.1| N6-adenine-specific methylase [Nautilia profundicola AmH]
          Length = 192

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 16/68 (23%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            ++F G+G   + LE     R  +  +  E +P + +  + N            I + D 
Sbjct: 51  VEMFSGVG--SIGLEAI--SRGAKKAYFLEKDPEAARVLKKN------------IDSMDP 94

Query: 65  PDHDVLLA 72
              +++L 
Sbjct: 95  EKCEIILG 102


>gi|119469769|ref|XP_001257977.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
 gi|119406129|gb|EAW16080.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
          Length = 238

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   +T   +     ++ E NP  ++  + N          T   GD 
Sbjct: 78  LVDAFAGAGGNTIAFARTGKWKR---VYAIEKNPAVLQCAKHNAQVYGVADKITWFEGDC 134

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +++  + V+ A  P
Sbjct: 135 FSILKDQLKELAPYSVIFASPP 156


>gi|54025403|ref|YP_119645.1| putative methyltransferase [Nocardia farcinica IFM 10152]
 gi|54016911|dbj|BAD58281.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 263

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 4   ITDLFCGIGGIRLDL--EQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDIAKI 59
           + DL CG G + L    E   + R VE   + +++P +V   + N     T+  GD+   
Sbjct: 98  VVDLCCGCGALGLAFATEMRAHGRTVELTAA-DVDPTAVCCARGNLAGHGTVHEGDLFDA 156

Query: 60  KTQDIP-DHDVLLAGFP 75
              D+    D+LLA  P
Sbjct: 157 LPTDLRGRIDILLANVP 173


>gi|169769126|ref|XP_001819033.1| RNA methylase family protein [Aspergillus oryzae RIB40]
 gi|83766891|dbj|BAE57031.1| unnamed protein product [Aspergillus oryzae]
          Length = 240

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FP----NTLIFG 54
           + + D F G GG  +   ++   +     ++ E NP  ++  + N   +      T   G
Sbjct: 77  MVLVDAFAGAGGNTIAFARSGRWKR---VYAIEKNPAVLQCAKHNAKIYGVEDKITWFEG 133

Query: 55  D---IAKIKTQDIPDHDVLLAGFP 75
           D   I   + +D+  + VL A  P
Sbjct: 134 DSLQIVNNQLKDLGPYSVLFASPP 157


>gi|52549034|gb|AAU82883.1| predicted methyltransferase [uncultured archaeon GZfos22D9]
          Length = 367

 Score = 36.7 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDIA 57
           I D+F G+G   +   Q           + +INP +++    N           I GD++
Sbjct: 193 IIDMFAGVGSFSI---QIAKRAPQSIVTAIDINPDAIRYLHENMELNGVRNIEPIEGDVS 249

Query: 58  KI 59
            I
Sbjct: 250 GI 251


>gi|240047619|ref|YP_002961007.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae
           HRC/581]
 gi|239985191|emb|CAT05204.1| Cytosine-specific methyltransferase [Mycoplasma conjunctivae]
          Length = 409

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 48  PNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
           PN  I  DI         D D+L   FPCQ  S  G
Sbjct: 112 PNNYI-SDIKNHNQPLPKDIDILTYSFPCQDISNMG 146


>gi|296812885|ref|XP_002846780.1| WW domain-containing protein [Arthroderma otae CBS 113480]
 gi|238842036|gb|EEQ31698.1| WW domain-containing protein [Arthroderma otae CBS 113480]
          Length = 238

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   ++   +     ++ E +P +++  + N          T   GD 
Sbjct: 75  LIDTFAGAGGNTIAFAKSNRWKR---VYAIEKDPETLRCAKHNAELYGVGDKITWFLGDC 131

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I + + +D+  + V+    P
Sbjct: 132 FEILQNQLKDLAPYSVIFGSPP 153


>gi|322792109|gb|EFZ16181.1| hypothetical protein SINV_14765 [Solenopsis invicta]
          Length = 298

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 48  PNTLIFGDIAKIKTQDIP---DHDVLLAGFPCQPFS 80
           P T   GD      Q +P   + +++  G PCQ FS
Sbjct: 122 PLTNRNGDQVDNNGQKLPQKGEVELICGGPPCQGFS 157


>gi|12276114|gb|AAG50268.1|AF311661_1 probable DNA cytosine methylase [Phage GMSE-1]
          Length = 91

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 31/84 (36%)

Query: 31 FSSEINPYSVKTYQANF-PNTLIFGDIAKIKTQDIPDHDV-------------------L 70
          + +EI+PY+ +  +       +  GD+ +   +D+   D+                    
Sbjct: 4  YYNEIDPYAAQWLRNLIVAGHIAEGDVDERSIEDVKPDDLKSYTQCHFFAGMGVWSYALA 63

Query: 71 LAGFP-----------CQPFSQAG 83
          LAG+P           CQPFS+AG
Sbjct: 64 LAGWPDNKPVWTRSCTCQPFSRAG 87


>gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299]
 gi|226516248|gb|ACO62243.1| predicted protein [Micromonas sp. RCC299]
          Length = 473

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 4   ITDLFCGIGGIRLDL---EQTFNHRNVECFFSSEINPYSVKTYQAN--FPNTLIFGDIAK 58
           + DLFCG+G   L L   ++  +    E     E    + +  +AN     T   GD+AK
Sbjct: 328 VLDLFCGVG--TLGLCVAKKAKHVFGWEVV--PEAVKDAERNAEANGITNATFRRGDLAK 383

Query: 59  IKTQDIPDHDVLLA 72
           +K   +P  D+++A
Sbjct: 384 LKAS-LPGPDIVIA 396


>gi|296242730|ref|YP_003650217.1| hypothetical protein Tagg_0995 [Thermosphaera aggregans DSM 11486]
 gi|296095314|gb|ADG91265.1| protein of unknown function Met10 [Thermosphaera aggregans DSM
           11486]
          Length = 327

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + DLF GIGG  L +             ++++NP + +    N
Sbjct: 178 VVDLFSGIGGFPLHIASLKTAL----VLANDLNPTAHELLMEN 216


>gi|149194071|ref|ZP_01871169.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
 gi|149136024|gb|EDM24502.1| hypothetical protein CMTB2_03263 [Caminibacter mediatlanticus TB-2]
          Length = 196

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
            ++F G+G   + LE     R  +  +  E +P + K  + N         I  +K +D 
Sbjct: 51  VEVFSGVG--SIGLEAI--SRGAKKAYFLEKDPEAAKVLKRN---------IDSLKEEDK 97

Query: 65  PDHDVLLA 72
              +++L 
Sbjct: 98  EKCEIILG 105


>gi|45358551|ref|NP_988108.1| RNA methyltransferase-like protein [Methanococcus maripaludis S2]
 gi|44921309|emb|CAF30544.1| RNA methyltransferase related protein [Methanococcus maripaludis
           S2]
          Length = 295

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK----TYQANFPNTLIFGDIAKI 59
           + D FCG G   L L      +  +    S+INP+++K      + NF   +   D  +I
Sbjct: 200 VVDGFCGSG--TLGL--AALKKGAKKVIFSDINPHALKDVIYNLKLNFSKEVF--DRIEI 253

Query: 60  KTQDIPDHDVL 70
              D  + D++
Sbjct: 254 INSDFLNLDIV 264


>gi|16081974|ref|NP_394384.1| hypothetical protein Ta0926 [Thermoplasma acidophilum DSM 1728]
 gi|10640203|emb|CAC12055.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 329

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + D+F GIG   L + +  N       F+ +INP ++   + N
Sbjct: 182 TVLDMFSGIGYFALPVAKYGNPMR---IFACDINPDAIHYLKEN 222


>gi|225156532|ref|ZP_03724866.1| Site-specific DNA methylase-like protein [Opitutaceae bacterium
          TAV2]
 gi|224802860|gb|EEG21108.1| Site-specific DNA methylase-like protein [Opitutaceae bacterium
          TAV2]
          Length = 255

 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 20/79 (25%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G     L L + F                         P+ +  GD+       
Sbjct: 7  VLSLFPGA---DL-LGRGFEAEGFCVV---------------RGPDLVWGGDVRTFHAPS 47

Query: 64 IPDHDVLLAGFPCQPFSQA 82
                ++ G PCQ FS+A
Sbjct: 48 -GAFGGIIGGPPCQDFSRA 65


>gi|47222420|emb|CAG12940.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 775

 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 54  GDIAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
           GD+  +  + I +    D+++ G PC   S 
Sbjct: 548 GDVRNVTRKHIEEWGPFDLVIGGSPCNDLSI 578


>gi|294012545|ref|YP_003546005.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
 gi|292675875|dbj|BAI97393.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S]
          Length = 391

 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV 27
           + + DL  G GG  L L      + V
Sbjct: 201 MTVIDLCAGAGGKTLALAAAMGGKGV 226


>gi|225155057|ref|ZP_03723553.1| Site-specific DNA methylase-like protein [Opitutaceae bacterium
          TAV2]
 gi|224804227|gb|EEG22454.1| Site-specific DNA methylase-like protein [Opitutaceae bacterium
          TAV2]
          Length = 255

 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 24/81 (29%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
          +  LF G     L L + F                         P+ +  GD+       
Sbjct: 7  VLSLFPGA---DL-LGRGFEAEGFCVV---------------RGPDLVWGGDVRTF---H 44

Query: 64 IPD--HDVLLAGFPCQPFSQA 82
          +P      ++ G PCQ FS+A
Sbjct: 45 VPPGAFGGIIGGPPCQDFSRA 65


>gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 242

 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   ++   +     ++ E +P  +   + N          T   GD 
Sbjct: 78  LIDAFAGAGGNSIAFAKSGRWKR---VYAIEKDPAVLACAKHNAKIYGVQSKITWFEGDC 134

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K   +D+  + V+ A  P
Sbjct: 135 FEILKTHLKDLGFYSVVFASPP 156


>gi|210610944|ref|ZP_03288669.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
 gi|210152244|gb|EEA83251.1| hypothetical protein CLONEX_00859 [Clostridium nexile DSM 1787]
          Length = 278

 Score = 36.3 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
          + D+L  G PCQ FS AG
Sbjct: 14 ELDLLSGGAPCQAFSYAG 31


>gi|331270910|ref|YP_004385621.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
 gi|329127302|gb|AEB77246.1| putative cytosine-specific DNA methylotransferase [Clostridium
          botulinum BKT015925]
          Length = 70

 Score = 36.3 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY 43
          +++ D F GIG +   L+       +E    SEI+  ++ +Y
Sbjct: 9  IRLFDSFAGIGALHKALKNIG--VEIELVGMSEIDVDAIISY 48


>gi|78044003|ref|YP_360292.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996118|gb|ABB15017.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 184

 Score = 36.3 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + D F G G   L LE     R  +  +  E +  +    + N  N         I GDI
Sbjct: 45  VLDGFAGTG--NLGLEAL--SRGAKFSYFIEADREAFSCLRRNIENLGYGDRAKAILGDI 100

Query: 57  AKIKTQDIPDHDVLLAGFP 75
            KI        D++    P
Sbjct: 101 FKILPHINEKFDLIFLDPP 119


>gi|28899731|ref|NP_799336.1| hypothetical protein VP2957 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840067|ref|ZP_01992734.1| putative methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|260361294|ref|ZP_05774399.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus K5030]
 gi|260879108|ref|ZP_05891463.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897984|ref|ZP_05906480.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           Peru-466]
 gi|260899651|ref|ZP_05908046.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus AQ4037]
 gi|28807983|dbj|BAC61220.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746339|gb|EDM57394.1| putative methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|308087169|gb|EFO36864.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           Peru-466]
 gi|308089651|gb|EFO39346.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           AN-5034]
 gi|308106733|gb|EFO44273.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus AQ4037]
 gi|308111828|gb|EFO49368.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus K5030]
 gi|328472442|gb|EGF43308.1| hypothetical protein VP10329_00373 [Vibrio parahaemolyticus 10329]
          Length = 199

 Score = 36.3 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E        E     E+NP + +  Q N
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--ELVTMIELNPQAFQQLQKN 101


>gi|291551321|emb|CBL27583.1| DNA-methyltransferase (dcm) [Ruminococcus torques L2-14]
          Length = 595

 Score = 36.3 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 40  VKTYQANF--PNTLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQAG 83
             +Y AN+   +     ++A +  +      D+ + G PCQ FS  G
Sbjct: 258 KASYMANYNIKDEQFHWNVAFLNGKQYAGQVDLFVGGSPCQSFSLVG 304


>gi|124027599|ref|YP_001012920.1| methyltransferase [Hyperthermus butylicus DSM 5456]
 gi|123978293|gb|ABM80574.1| Methyltransferase [Hyperthermus butylicus DSM 5456]
          Length = 349

 Score = 36.3 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY 43
            + D+F G GG  L + +    R      +++ NP+++ T 
Sbjct: 196 TVLDMFAGWGGFPLVISKLGRAR---LVVANDANPWAIATL 233


>gi|67463853|pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 gi|67463854|pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 36.3 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY----SVKTYQANFPNTLIF--GDI 56
           K+ DL CG+GG    LE        E     +I+      + + Y  +  + + F  GD 
Sbjct: 41  KVLDLACGVGGFSFLLE----DYGFEVVG-VDISEDXIRKARE-YAKSRESNVEFIVGDA 94

Query: 57  AKIKTQDIPDHDVLLA 72
            K+  +D    D ++ 
Sbjct: 95  RKLSFED-KTFDYVIF 109


>gi|14590157|ref|NP_142222.1| hypothetical protein PH0226 [Pyrococcus horikoshii OT3]
 gi|3256615|dbj|BAA29298.1| 227aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 227

 Score = 36.3 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPY----SVKTYQANFPNTLIF--GDI 56
           K+ DL CG+GG    LE        E     +I+      + + Y  +  + + F  GD 
Sbjct: 41  KVLDLACGVGGFSFLLE----DYGFEVVG-VDISEDMIRKARE-YAKSRESNVEFIVGDA 94

Query: 57  AKIKTQDIPDHDVLLA 72
            K+  +D    D ++ 
Sbjct: 95  RKLSFED-KTFDYVIF 109


>gi|149008047|ref|ZP_01831595.1| C-5 cytosine-specific DNA methylase [Streptococcus pneumoniae
          SP18-BS74]
 gi|21538805|emb|CAD35757.1| putative C5-methylase [Streptococcus phage VO1]
 gi|147760455|gb|EDK67432.1| C-5 cytosine-specific DNA methylase [Streptococcus pneumoniae
          SP18-BS74]
          Length = 267

 Score = 36.3 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 43 YQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          Y   F +  +F          +P  D+++A  PC+ +S A
Sbjct: 57 YSRLFGDNKLFD-----TLDKLPHPDLIIASPPCESWSNA 91


>gi|328884483|emb|CCA57722.1| SAM-dependent methyltransferases [Streptomyces venezuelae ATCC
           10712]
          Length = 410

 Score = 36.3 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + DL  GIGG  + L +           + + +P + +  +AN    L  G++ +++  D
Sbjct: 120 VADLCSGIGGDAIALARAGIS-----VLAVDRDPLTAEVARAN-AEALGLGELIEVRCAD 173

Query: 64  IPDHD 68
           + + D
Sbjct: 174 VAEID 178


>gi|302543276|ref|ZP_07295618.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460894|gb|EFL23987.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 393

 Score = 36.3 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + DL CGIGG  + + +           + + +P +    +AN           +   D+
Sbjct: 104 VADLCCGIGGDAIAMARAGLS-----VLAVDRDPLTCAVARANADALGLSQLIEVRCADV 158

Query: 57  AKIKTQD 63
             I T  
Sbjct: 159 TGIDTSS 165


>gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 417

 Score = 35.9 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 9/46 (19%)

Query: 3   KITDLFCGIG--GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K+ DL+ G+G  GI L  ++ F    +      EINP++V+  + N
Sbjct: 280 KVLDLYSGVGTFGIYLA-KRGFKVEGI------EINPFAVEMAKKN 318


>gi|266623325|ref|ZP_06116260.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
           13479]
 gi|288864902|gb|EFC97200.1| RNA methyltransferase, RsmD family [Clostridium hathewayi DSM
           13479]
          Length = 187

 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
              DLF G GGI   +E     R  +     E+NP + +  + N           K   +
Sbjct: 44  TFLDLFSGSGGI--GIEAL--SRGADRAVFIEMNPKAAECIRENLQT-------TKFTDE 92

Query: 63  DI-PDHDVLLA 72
            I  + DVL  
Sbjct: 93  SIVMNCDVLTG 103


>gi|261250006|ref|ZP_05942583.1| ribosomal RNA small subunit methyltransferase D [Vibrio orientalis
           CIP 102891]
 gi|260939510|gb|EEX95495.1| ribosomal RNA small subunit methyltransferase D [Vibrio orientalis
           CIP 102891]
          Length = 199

 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K  DLF G GG  L  E       +      E+NP + K  Q N
Sbjct: 62  KCLDLFAGSGG--LGFEAASRQAEMVTL--IELNPQAFKQLQTN 101


>gi|284050005|ref|ZP_06380215.1| DNA (cytosine-5-)-methyltransferase [Arthrospira platensis str.
          Paraca]
          Length = 321

 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 66 DHDVLLAGFPCQPFSQAG 83
            +++  G PCQ FS  G
Sbjct: 5  HINLICGGPPCQGFSTIG 22


>gi|78485003|ref|YP_390928.1| C-5 cytosine-specific DNA methylase [Thiomicrospira crunogena
           XCL-2]
 gi|78363289|gb|ABB41254.1| C-5 cytosine-specific DNA methylase [Thiomicrospira crunogena
           XCL-2]
          Length = 648

 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 33/105 (31%)

Query: 7   LFCGIGGIRLDLEQTFNHRN-----VECFFSSEINPYSVK-------------------T 42
           LFCG+GG                    C    + +  +++                    
Sbjct: 11  LFCGLGGGAKGFNMGQAKVGQVEAEFRCIGGIDSDAAAIQDFNQLAGAKGTVMDLFDASQ 70

Query: 43  YQANFPNTLIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFS 80
           Y     +            DI +    + P+  ++    PC+ FS
Sbjct: 71  YLDWHGHLPPEDWKEATPEDIRRAAGYERPN--IVFTSPPCKGFS 113


>gi|213972167|ref|ZP_03400254.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           tomato T1]
 gi|302063826|ref|ZP_07255367.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           tomato K40]
 gi|302134027|ref|ZP_07260017.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923077|gb|EEB56685.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
           tomato T1]
          Length = 471

 Score = 35.9 bits (83), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---PYSVKTYQAN---FPNT--LIFGD 55
           +  LF G G +   +        ++ F    I     Y   + + N   + +T   I  D
Sbjct: 136 VCSLFHGGGVLDRAIHAGLARSGIDTFVRIGIELEGQYLDASLRNNPMLWRDTSFAICAD 195

Query: 56  IAKI-KTQDIPDHDVLLAGFPCQPFSQAG 83
           +  + +    P  D+++AG PC   S+AG
Sbjct: 196 VRDVQRGTGTPVCDLVVAGIPCTGASRAG 224


>gi|289580575|ref|YP_003479041.1| hypothetical protein Nmag_0895 [Natrialba magadii ATCC 43099]
 gi|289530128|gb|ADD04479.1| protein of unknown function Met10 [Natrialba magadii ATCC 43099]
          Length = 366

 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + D+F G+G         F +R  EC    ++NP +++  + N          T I  D+
Sbjct: 218 VFDMFAGVG----PFVIPFANRGAECVG-VDVNPDAIEYLRENARRNGVADRVTAICDDV 272

Query: 57  AKIKTQ 62
             + ++
Sbjct: 273 RDVSSE 278


>gi|46579942|ref|YP_010750.1| methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602644|ref|YP_967044.1| methyltransferase [Desulfovibrio vulgaris DP4]
 gi|46449358|gb|AAS96009.1| methyltransferase, putative [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120562873|gb|ABM28617.1| putative methyltransferase [Desulfovibrio vulgaris DP4]
 gi|311234060|gb|ADP86914.1| methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 190

 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ DLF G G   L  E     R  +  +  E+N  +    + N
Sbjct: 47 RVLDLFAGSG--SLAFEAL--SRGADEAWFVELNAKAAACIEKN 86


>gi|312866067|ref|ZP_07726288.1| RNA methyltransferase, RsmD family [Streptococcus downei F0415]
 gi|311098471|gb|EFQ56694.1| RNA methyltransferase, RsmD family [Streptococcus downei F0415]
          Length = 179

 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 21/85 (24%)

Query: 3   KITDLFCGIGGIRL-----DLEQTFNHRNVECFFSSEINPYSVKTYQANF-----PN--T 50
           ++ DL+ G GG+ +      +EQ             E +  +    +AN      P+   
Sbjct: 44  RVLDLYAGSGGLSIEAISRGMEQAVL---------VERDRRAQAVIEANIQMTQAPDQFH 94

Query: 51  LIFGDIAKIKTQDIPDHDVLLAGFP 75
           L+  D  ++        D++L   P
Sbjct: 95  LLKRDARQVLPTLTGQFDLVLLDPP 119


>gi|156057367|ref|XP_001594607.1| hypothetical protein SS1G_04414 [Sclerotinia sclerotiorum 1980]
 gi|154702200|gb|EDO01939.1| hypothetical protein SS1G_04414 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 257

 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 19/86 (22%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG--DIAKIK 60
            I DLF G GG  +      ++R      + E +P  +   + N     I+G  +I  + 
Sbjct: 99  TIIDLFAGAGGNSIAF--ALSNRWAHII-AIEKDPSVIACAENN---AYIYGATNINWVN 152

Query: 61  TQDI-----------PDHDVLLAGFP 75
                          P   V+ A  P
Sbjct: 153 GDCFEYLKTHASSINPSETVIFASPP 178


>gi|148377669|ref|YP_001256545.1| hypothetical protein MAG_4030 [Mycoplasma agalactiae PG2]
 gi|148291715|emb|CAL59101.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 186

 Score = 35.9 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 64 IPDHDVLLAGFPCQPFSQA 82
          +P  D++LA  PC+ FS A
Sbjct: 1  MPKPDIILASPPCESFSMA 19


>gi|33322745|gb|AAQ07107.1|AF496419_1 cytosine-specific DNA methyltransferase [Lactobacillus
          delbrueckii subsp. lactis]
          Length = 138

 Score = 35.9 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 66 DHDVLLAGFPCQPFSQA 82
          + D++  G PCQ FS+A
Sbjct: 28 EVDMVXGGPPCQGFSEA 44


>gi|325180064|emb|CCA14465.1| RAC family serine/threonineprotein kinase putative [Albugo laibachii
            Nc14]
          Length = 1140

 Score = 35.9 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 17   DLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGDIAKIKT 61
                  NH   E   S + +  + K Y+ NF P+     DI  +  
Sbjct: 1063 GGHNIMNHAFFE---SIDWDKLARKEYKPNFVPDVSSVDDITNVPE 1105


>gi|94986727|ref|YP_594660.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730976|emb|CAJ54339.1| N6-adenine-specific methylase [Lawsonia intracellularis PHE/MN1-00]
          Length = 190

 Score = 35.9 bits (83), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           I DLF G G   L  E     R        E NP +V+    N     +F  ++ ++   
Sbjct: 48  ILDLFAGSG--SLGFEAI--SRGAAEVCFIENNPKAVQCLYKNIEKLRLFEQVSVVEQDV 103

Query: 64  I 64
           I
Sbjct: 104 I 104


>gi|188997006|ref|YP_001931257.1| methyltransferase small [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932073|gb|ACD66703.1| methyltransferase small [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 388

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 16/86 (18%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI--------NPYSVKTYQANFPNTLIF 53
            K+ DLFC  GG  +        +  E     +I           +      N+   ++ 
Sbjct: 219 FKVLDLFCNAGGFGI----HGGKKGAEFIKFVDISSFALSQVEENARLNNLKNY--EIVK 272

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPF 79
            D+     ++   +D+++   P  PF
Sbjct: 273 DDVFDFLKKEKDKYDLIILDPP--PF 296


>gi|197106627|ref|YP_002132004.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
 gi|196480047|gb|ACG79575.1| N6-adenine-specific methylase [Phenylobacterium zucineum HLK1]
          Length = 187

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
          L++ DLF G G   L  E         C F  E +  +    + N     +FG
Sbjct: 48 LRVIDLFAGSG--ALGFEALSRGAAF-CLF-VETDEAARGAIRENVDGMGLFG 96


>gi|152969948|ref|YP_001335057.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|150954797|gb|ABR76827.1| putative site-specific DNA methylase [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
          Length = 619

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI----NPYSVKTYQANFPNTLIFGD---- 55
          I D F G GG    +E            S +I    +P +V  +  N P+TL + +    
Sbjct: 5  IVDNFAGGGGASTGIELAIGR-------SVDIAINHDPNAVAMHTTNHPDTLHYCESVYS 57

Query: 56 IAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          I            +      C+ FS+A
Sbjct: 58 IRPKVATAGRRVGLAWFSPDCRHFSKA 84


>gi|83319814|ref|YP_424525.1| C-5 cytosine-specific DNA methylase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283700|gb|ABC01632.1| C-5 cytosine-specific DNA methylase [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 277

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 62  QDIPDHDVLLAGFPCQPFSQA 82
           +++P  D++LA  PC+ +S A
Sbjct: 86  KELPKPDIILASPPCESWSGA 106


>gi|197336407|ref|YP_002157239.1| RNA methyltransferase, RsmD family [Vibrio fischeri MJ11]
 gi|197317897|gb|ACH67344.1| RNA methyltransferase, RsmD family [Vibrio fischeri MJ11]
          Length = 200

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           +  DLF G GG  L  E     R  E     E+N  +    + N
Sbjct: 64  RCLDLFSGSGG--LGFEAA--SRGAEHVVMLELNKQAHAQLKQN 103


>gi|59713061|ref|YP_205837.1| methyltransferase [Vibrio fischeri ES114]
 gi|59481162|gb|AAW86949.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 200

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           +  DLF G GG  L  E     R  E     E+N  +    + N
Sbjct: 64  RCLDLFSGSGG--LGFEAA--SRGAEHVVMLELNKQAHAQLKQN 103


>gi|227892679|ref|ZP_04010484.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus ultunensis DSM 16047]
 gi|227865550|gb|EEJ72971.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus ultunensis DSM 16047]
          Length = 280

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           K+ DL  G G I + L +    + ++    ++S++   +++T + NF N  +  D+   K
Sbjct: 111 KVLDLGTGSGCITVALAKEAEKKGIKALTLYASDVTDTALRTSEENFLNYHL--DVTTRK 168

Query: 61  TQ---DIPDHDVLLAGFP 75
                 +   D++++  P
Sbjct: 169 ANVLIGLEKFDLIISNPP 186


>gi|224055029|ref|XP_002198425.1| PREDICTED: hypothetical protein LOC100190368 [Taeniopygia guttata]
 gi|224055031|ref|XP_002198453.1| PREDICTED: similar to putative RIKEN cDNA 2810410A08 [Taeniopygia
           guttata]
 gi|197128487|gb|ACH44985.1| putative RIKEN cDNA 2810410A08 [Taeniopygia guttata]
 gi|197128488|gb|ACH44986.1| putative RIKEN cDNA 2810410A08 [Taeniopygia guttata]
 gi|197128489|gb|ACH44987.1| putative RIKEN cDNA 2810410A08 [Taeniopygia guttata]
 gi|197128490|gb|ACH44988.1| putative RIKEN cDNA 2810410A08 [Taeniopygia guttata]
          Length = 214

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDI 56
            I DL CG G + +            C    +I+  +++ + +N  +       ++  DI
Sbjct: 54  TIADLGCGCGMLSIG--SAMLGAGF-CVGL-DIDADALEIFNSNIEDFDLTNVNMVQCDI 109

Query: 57  AKIKTQDIPDHDVLLAGFP 75
             +        D ++   P
Sbjct: 110 CSLSDSMSDTFDTVIMNPP 128


>gi|167756531|ref|ZP_02428658.1| hypothetical protein CLORAM_02068 [Clostridium ramosum DSM 1402]
 gi|237733129|ref|ZP_04563610.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702706|gb|EDS17285.1| hypothetical protein CLORAM_02068 [Clostridium ramosum DSM 1402]
 gi|229383811|gb|EEO33902.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 183

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF 47
          + DLF G GG  L +E     R  E  +S +    + +  + NF
Sbjct: 45 VLDLFAGSGG--LGIEAL--SRGYEHLYSVDNQYAAFQVIKENF 84


>gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 462

 Score = 35.9 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECFFSS 33
           K+ DLFCG+G   L   ++      +E   +S
Sbjct: 317 KMIDLFCGVGTFSLPFAKRVKELAGIEIVETS 348


>gi|257453414|ref|ZP_05618709.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Enhydrobacter aerosaccus SK60]
 gi|257449166|gb|EEV24114.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Enhydrobacter aerosaccus SK60]
          Length = 389

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DL  G G I + L   F    V+   +S+I+  +++    N  +  +   +  I++ 
Sbjct: 211 RMLDLCTGSGCIAIALASRFPDAMVD---ASDIDKNALEVAAVNVDHHHMNHQVNLIESN 267

Query: 63  DIPDH------DVLLAGFP 75
                      D+++   P
Sbjct: 268 LFEKVPAENQYDLIVTNPP 286


>gi|220909632|ref|YP_002484943.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866243|gb|ACL46582.1| DNA-cytosine methyltransferase [Cyanothece sp. PCC 7425]
          Length = 359

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)

Query: 38 YSVKTYQANFPNTLIFGDIAKIKTQDIPDHD--------VLLAGFPCQPFSQ 81
              TYQ N   T    D+ +++  D             VL+A  PC  FSQ
Sbjct: 36 NCNATYQRNIGITPKDADLIQLEPSDYRRELGLEREELEVLIACPPCTGFSQ 87


>gi|323498059|ref|ZP_08103065.1| hypothetical protein VISI1226_14367 [Vibrio sinaloensis DSM 21326]
 gi|323316867|gb|EGA69872.1| hypothetical protein VISI1226_14367 [Vibrio sinaloensis DSM 21326]
          Length = 199

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG  L  E        E     E+NP + K  Q+N    L   +I  + T 
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--EMVTMIELNPQAFKQLQSN-VAALKADNITLVNTD 116

Query: 63  DI 64
            +
Sbjct: 117 AL 118


>gi|222147749|ref|YP_002548706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
 gi|221734737|gb|ACM35700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
          Length = 418

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41
           ++ DLFCGIG   L L +           + E +  +VK
Sbjct: 276 RVADLFCGIGTFTLRLARQAQ------VLAVESDEKAVK 308


>gi|85710835|ref|ZP_01041896.1| N6-adenine-specific methylase [Idiomarina baltica OS145]
 gi|85695239|gb|EAQ33176.1| N6-adenine-specific methylase [Idiomarina baltica OS145]
          Length = 199

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          + DLF G G   L  E     R  +     E++  + +    N
Sbjct: 56 VVDLFAGSG--SLGFEAA--SRGAQQVTLIEMDKAAARQLNQN 94


>gi|205373063|ref|ZP_03225868.1| hypothetical protein Bcoam_06735 [Bacillus coahuilensis m4-4]
          Length = 191

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +++T   N
Sbjct: 46 LDLFAGSGG--LGIEAL--SRGIEHVIFVDRDQKAIQTINQN 83


>gi|307106231|gb|EFN54477.1| hypothetical protein CHLNCDRAFT_135136 [Chlorella variabilis]
          Length = 824

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 36/100 (36%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP------------- 48
           L++ +LF G+G +             +     E++  +  +Y AN P             
Sbjct: 280 LRMVELFAGLGTVS----DAAACAGFQPVCGLEVDAAASSSYCANVPVAGGEEMSVEQFL 335

Query: 49  --------NTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
                        G IA            L A  PCQ  S
Sbjct: 336 HALARGEEGMPEPGSIA-----------YLHASPPCQALS 364


>gi|134288346|ref|YP_001110509.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis G4]
 gi|134132996|gb|ABO59706.1| C-5 cytosine-specific DNA methylase [Burkholderia vietnamiensis G4]
          Length = 524

 Score = 35.9 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVE--CFFSSEINPYSVKTYQANFP-----NTLIFG 54
           +K   L+ GIG +   + + F    +E    F+++    ++     + P          G
Sbjct: 163 IKTVGLYAGIGTLEAAIHEGFADAGLESTTIFANDSWDEAIDCLLTDNPASTRRTKSFAG 222

Query: 55  DIAKIKTQD--IPDHDVLLAGFPCQPFSQ 81
            I +       IP   +L  G PC+  S+
Sbjct: 223 GIEQFIASGIRIPGTTLLTIGLPCKGASR 251


>gi|332968213|gb|EGK07290.1| ribosomal RNA small subunit methyltransferase D [Kingella kingae
          ATCC 23330]
          Length = 189

 Score = 35.5 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
          + DLF G G   L  E    H   +     EI+  +V+  + 
Sbjct: 56 VLDLFAGSG--ALGFESASRHA--KQVEMCEIHKAAVQNLRH 93


>gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 493

 Score = 35.5 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECF-FSSEINPYSVKTYQANFPNTLIF--GDIA- 57
            + DL+CGIGGI L L  +      VE    + E    + +  + N  +  +F  GD+A 
Sbjct: 341 TVLDLYCGIGGIALTLARRARRVIGVEVVEAAVE---DARRNARMNGISNCVFQAGDVAE 397

Query: 58  --KIKTQDIPDHDVLLAGFP 75
             +   +D    DV++   P
Sbjct: 398 QLEELAEDGEGVDVVVLNPP 417


>gi|303274456|ref|XP_003056548.1| hypothetical protein MICPUCDRAFT_55679 [Micromonas pusilla
           CCMP1545]
 gi|226462632|gb|EEH59924.1| hypothetical protein MICPUCDRAFT_55679 [Micromonas pusilla
           CCMP1545]
          Length = 322

 Score = 35.5 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP 37
           + DLFCG GG  +   +    R      + +IN 
Sbjct: 140 VLDLFCGAGGNTIAFARCAGAR----VLACDINE 169


>gi|317032892|ref|XP_001394550.2| RNA methylase family protein [Aspergillus niger CBS 513.88]
          Length = 240

 Score = 35.5 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +    +   +     ++ E NP  ++  + N          T   GD 
Sbjct: 79  LVDAFAGAGGNSIAFALSGRWKR---VYAIEKNPAVLQCAKHNAKIYGVADKITWFEGDC 135

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +D+  + V+ A  P
Sbjct: 136 FEIIKNQLKDLAPYSVVFASPP 157


>gi|332300619|ref|YP_004442540.1| Protein of unknown function methylase [Porphyromonas
          asaccharolytica DSM 20707]
 gi|332177682|gb|AEE13372.1| Protein of unknown function methylase putative [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 186

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 3  KITDLFCGIGGIRLDL 18
          ++ DLF GIGGI L+ 
Sbjct: 46 RVLDLFAGIGGISLEF 61


>gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
 gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
          Length = 287

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 10  GIGGIRLDLEQTFNHRNVECFFSSEIN----PYSVKTYQANFPNTLIFGDIAKIKTQDIP 65
           GIG +   L +T  +       S EI+    P   KT +      +I GDI K+  +DI 
Sbjct: 65  GIGTLTQALAETGAN-----VKSVEIDESLLPILRKTLEGYDNVEIIHGDILKVDLKDI- 118

Query: 66  DHDVLLAGFPCQPFSQA 82
                  G   +PF+ A
Sbjct: 119 -----TGG---KPFTVA 127


>gi|149907916|ref|ZP_01896584.1| putative adenine-specific methylase [Moritella sp. PE36]
 gi|149808922|gb|EDM68853.1| putative adenine-specific methylase [Moritella sp. PE36]
          Length = 309

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++I D+  G G I + L   F    ++   + +I   +++  + N     +   +  I++
Sbjct: 134 MRILDMCTGSGCIAIALSHAFPDSEID---AVDIEHGAIEVAEINIQEHGVENQVTPIQS 190

Query: 62  QDIPD-----HDVLLAGFP 75
               +     +D++++  P
Sbjct: 191 DLFSNLEGLRYDMIVSNPP 209


>gi|124486470|ref|YP_001031086.1| methyltransferase [Methanocorpusculum labreanum Z]
 gi|124364011|gb|ABN07819.1| methyltransferase [Methanocorpusculum labreanum Z]
          Length = 308

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN------FPNTLIFGDI 56
           +I D+F G+G   + L         +   +++INP +V   Q N           I GD 
Sbjct: 164 RILDMFAGVGPFPVML-----GGKAKLVVANDINPSAVYLLQKNIRLNHLHNVVPILGDA 218

Query: 57  AKIKT 61
             +  
Sbjct: 219 MNLPE 223


>gi|299821541|ref|ZP_07053429.1| site-specific DNA-methyltransferase (adenine-specific) [Listeria
          grayi DSM 20601]
 gi|299817206|gb|EFI84442.1| site-specific DNA-methyltransferase (adenine-specific) [Listeria
          grayi DSM 20601]
          Length = 189

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP--YSVKTYQAN 46
          K+ DLF G GG  L +E        E  F   I+    +VKT Q N
Sbjct: 44 KVLDLFAGSGG--LGIEALSRGAG-EAVF---IDQAISAVKTIQTN 83


>gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
 gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
          Length = 417

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K+ DL+ G+G   + L +    +  E     EINP++V+  + N
Sbjct: 279 KVLDLYSGVGTFGIYLAK----KGFEVEG-IEINPFAVEMARKN 317


>gi|322382544|ref|ZP_08056424.1| hypothetical protein PL1_2270 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321153460|gb|EFX45865.1| hypothetical protein PL1_2270 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 185

 Score = 35.5 bits (82), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          + DLF G GG  L +E     R +E     +I   S+ T + N
Sbjct: 45 VLDLFAGTGG--LGIEAL--SRGMEKGIFVDIEKKSLDTIRHN 83


>gi|313680143|ref|YP_004057882.1| hypothetical protein Ocepr_1252 [Oceanithermus profundus DSM
          14977]
 gi|313152858|gb|ADR36709.1| Conserved hypothetical protein CHP00095 [Oceanithermus profundus
          DSM 14977]
          Length = 174

 Score = 35.5 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DL+ G G   + LE        E     E +P +VKT + N
Sbjct: 47 FLDLYAGSG--AVGLEAA--SEGFEAVL-VESDPGAVKTLREN 84


>gi|253577772|ref|ZP_04855044.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850090|gb|EES78048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 189

 Score = 35.5 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DLF G GGI   +E      +       E NP +    + N
Sbjct: 50 RFLDLFSGSGGI--GIEALSRGASYAV--FVEKNPKAAACIREN 89


>gi|138894633|ref|YP_001125086.1| methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196247758|ref|ZP_03146460.1| methyltransferase [Geobacillus sp. G11MC16]
 gi|134266146|gb|ABO66341.1| Methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196212542|gb|EDY07299.1| methyltransferase [Geobacillus sp. G11MC16]
          Length = 202

 Score = 35.5 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +V+T + N
Sbjct: 46 LDLFAGSGG--LGIEAL--SRGLERVIFVDHDTKAVQTVRKN 83


>gi|325267341|ref|ZP_08134003.1| ribosomal RNA small subunit methyltransferase D [Kingella
          denitrificans ATCC 33394]
 gi|324981278|gb|EGC16928.1| ribosomal RNA small subunit methyltransferase D [Kingella
          denitrificans ATCC 33394]
          Length = 190

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          L + DLF G G   L  E    H   +     E+N  +    Q +
Sbjct: 56 LTMLDLFAGSG--ALGFESASRHA--KTVVMCELNRQAAAMLQQH 96


>gi|289207359|ref|YP_003459425.1| methyltransferase [Thioalkalivibrio sp. K90mix]
 gi|288942990|gb|ADC70689.1| methyltransferase [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN------TLIFGDI 56
           ++ DL+ G G   L  E     R     +  E +  +    +AN          +   D+
Sbjct: 59  RVLDLYAGTG--ALGFEAA--SRGAREVWLVERDARAAAQLEANRERLGATQVHIRRDDV 114

Query: 57  AKIKTQDIPD---HDVLLAGFP 75
           A++  Q +P+    DV+    P
Sbjct: 115 ARLLGQ-LPEGDPFDVVFLDPP 135


>gi|254282238|ref|ZP_04957206.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [gamma proteobacterium NOR51-B]
 gi|219678441|gb|EED34790.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [gamma proteobacterium NOR51-B]
          Length = 301

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I D+ CG  G  L +         E     +I+  ++   + N     + G I+ ++  
Sbjct: 124 RIVDVCCG--GGSLGILAATEFPGAE-VLCLDIDEKALALAEENIARHGLQGQISTVRAD 180

Query: 63  DI----PD-HDVLLAGFP 75
            +    PD  D++LA  P
Sbjct: 181 LLGPLSPDSVDIILANPP 198


>gi|241889800|ref|ZP_04777098.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gemella haemolysans ATCC 10379]
 gi|241863422|gb|EER67806.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gemella haemolysans ATCC 10379]
          Length = 280

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIF--GDI 56
            KI DL  G G I + L++     +V+   +S+I+  +++  + N      T+ F   DI
Sbjct: 115 FKILDLCTGSGIIAITLKKELEQVSVDVI-ASDISKEAIEVAKENSQSHDATIKFIKSDI 173

Query: 57  AKIKTQDIPDHDVLLAGFP 75
                 D    D++++  P
Sbjct: 174 FN-NIDD--KFDIIVSNPP 189


>gi|258574653|ref|XP_002541508.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901774|gb|EEP76175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 175

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ- 62
           + D F G+GG  +   ++   +     ++ E +P  ++  + N     +   I   +   
Sbjct: 77  MIDAFAGVGGNAIAFARSNKWKR---VYAIEKDPAVLQCAKHNAKIYGVEDKITWFEGDC 133

Query: 63  ---------DIPDHDVLLAGFP 75
                    D+  + V+ A  P
Sbjct: 134 FETIRLYLKDLGPYSVIFASPP 155


>gi|149203399|ref|ZP_01880369.1| hypothetical protein RTM1035_02240 [Roseovarius sp. TM1035]
 gi|149143232|gb|EDM31271.1| hypothetical protein RTM1035_02240 [Roseovarius sp. TM1035]
          Length = 341

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 47 FPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          +P  +I  D+A     ++   D+L+AG PCQ  S
Sbjct: 37 YPPEIIQHDLAT----EVGKTDLLIAGPPCQGHS 66


>gi|221053907|ref|XP_002261701.1| PHF5-like protein [Plasmodium knowlesi strain H]
 gi|193808161|emb|CAQ38864.1| PHF5-like protein, putative [Plasmodium knowlesi strain H]
          Length = 1631

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 3    KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN 36
             + DLFCG+G   L L +      ++ +++ +IN
Sbjct: 1378 NVVDLFCGVGYFTLPLLKFVGEGKIKEYYACDIN 1411


>gi|14573301|gb|AAK68037.1| DNA methyltransferase 2e [Homo sapiens]
          Length = 53

 Score = 35.5 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFG---DIAKIK 60
          +   + ++N  + + Y+ NFP+T +     +I KI 
Sbjct: 10 QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEITKIT 45


>gi|261856758|ref|YP_003264041.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2]
 gi|261837227|gb|ACX96994.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2]
          Length = 430

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSE 34
           + DL  G GG  L L +    +      + +
Sbjct: 242 VLDLCAGAGGKSLGLAEAVGEQGH--VLACD 270


>gi|76801331|ref|YP_326339.1| hypothetical protein NP1360A [Natronomonas pharaonis DSM 2160]
 gi|76557196|emb|CAI48771.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 345

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           ++ D+F GIG   L + ++          ++EI+P + +    N
Sbjct: 201 RVFDMFAGIGYFTLPMARSGA-----TVTAAEIDPDAYRLLVEN 239


>gi|302525045|ref|ZP_07277387.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
 gi|302433940|gb|EFL05756.1| RsmD family RNA methyltransferase [Streptomyces sp. AA4]
          Length = 188

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLIFGDIA 57
           ++ DL+ G G   L LE     R     +  E +  +    + N        T+  G + 
Sbjct: 46  RVLDLYAGSG--ALGLEAL--SRGAADAWFVEADRRAADVLRGNVADLRLGGTVRAGQVE 101

Query: 58  KIKTQDIP-DHDVLLAGFP 75
            +     P   DV+LA  P
Sbjct: 102 TVVAAPAPVQFDVVLADPP 120


>gi|298505465|gb|ADI84188.1| DNA cytosine methyltransferase family protein [Geobacter
          sulfurreducens KN400]
          Length = 444

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 56 IAKIKTQDIPDHD--VLLAGFPCQPFSQAG 83
          I  +  + +   D  VL+ G PCQ +S  G
Sbjct: 32 IDALIEESLAGTDRWVLIGGPPCQAYSIIG 61


>gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 464

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECFFSS 33
           K+ DLFCG+G   L    +      +E   SS
Sbjct: 320 KMIDLFCGVGTFSLPFASRVKALAGIEIVESS 351


>gi|289422999|ref|ZP_06424819.1| hypothetical protein HMPREF0631_0417 [Peptostreptococcus
          anaerobius 653-L]
 gi|289156573|gb|EFD05218.1| hypothetical protein HMPREF0631_0417 [Peptostreptococcus
          anaerobius 653-L]
          Length = 39

 Score = 35.5 bits (82), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVE 28
            + DLF G GG+        N    +
Sbjct: 9  FTVIDLFSGAGGLSKGFLDAGNINIFK 35


>gi|117676134|ref|YP_863710.1| C-5 cytosine-specific DNA methylase [Shewanella sp. ANA-3]
 gi|117614958|gb|ABK50411.1| C-5 cytosine-specific DNA methylase [Shewanella sp. ANA-3]
          Length = 457

 Score = 35.1 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNV--ECFFSSEINPYSVKTYQANFPNTLIFGDI-AK 58
           LK+  LF G G +   +        +  +   + E+    + +   N P       I  +
Sbjct: 124 LKVASLFHGGGVLDKAVHHGLESAGISSKIAVAVELESQYLDSSLTNNPELWDSSSIVIE 183

Query: 59  IKTQDIP------DHDVLLAGFPCQPFSQAG 83
              QD+       + DVL+AG PC   S++G
Sbjct: 184 SPVQDVNLQQCNMEVDVLVAGIPCVGASKSG 214


>gi|293364119|ref|ZP_06610853.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552320|gb|EFF41096.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
          Length = 49

 Score = 35.1 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 62 QDIPDHDVLLAGFPCQPFSQA 82
           ++P  D++LA  PC+ +S A
Sbjct: 2  SELPKPDIILASPPCESWSGA 22


>gi|78356825|ref|YP_388274.1| hypothetical protein Dde_1782 [Desulfovibrio desulfuricans subsp.
          desulfuricans str. G20]
 gi|78219230|gb|ABB38579.1| conserved hypothetical protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. G20]
          Length = 189

 Score = 35.1 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ DLF G G      E     R     +  E NP +VK  ++N
Sbjct: 47 RVLDLFAGSG--SCGFEAL--SRGAAEGWFVESNPAAVKVIRSN 86


>gi|242399436|ref|YP_002994861.1| Met-10+ like protein [Thermococcus sibiricus MM 739]
 gi|242265830|gb|ACS90512.1| Met-10+ like protein [Thermococcus sibiricus MM 739]
          Length = 333

 Score = 35.1 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT------LIFGDIA 57
           + D+F G+G   + L +      V+  F+ ++NP +++  + N           I GD+ 
Sbjct: 188 VFDMFAGVGPYSILLAK-----KVKMVFACDVNPIAIRYLEENKKLNKVENLIPILGDVR 242

Query: 58  KIKTQ 62
           K+  Q
Sbjct: 243 KVAGQ 247


>gi|147853569|emb|CAN82351.1| hypothetical protein VITISV_019436 [Vitis vinifera]
          Length = 377

 Score = 35.1 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 18 LEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQ 77
          + Q     + +C  +SE    +           L   DI  +        D +  G PCQ
Sbjct: 1  MAQACGDAD-DCVSTSEATELA---------EKLDEKDIRNLPRP--GQVDFINGGPPCQ 48

Query: 78 PFS 80
           FS
Sbjct: 49 GFS 51


>gi|295109966|emb|CBL23919.1| RNA methyltransferase, RsmD family [Ruminococcus obeum A2-162]
          Length = 184

 Score = 35.1 bits (81), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DLF G GGI   +E           F+ E NP +    + N
Sbjct: 44 RFLDLFSGSGGI--GIEALSRGAAY-AVFA-EKNPKACSCIRDN 83


>gi|307106990|gb|EFN55234.1| hypothetical protein CHLNCDRAFT_52630 [Chlorella variabilis]
          Length = 1211

 Score = 35.1 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 49  NTLIFGDIAKIKTQD-IP---DHDVLLAGFPCQPFS 80
           + L+ G + K++ +  IP   + D +  G PCQ  S
Sbjct: 521 DELLRGFVRKLRERQLIPFPGEVDFICGGPPCQGIS 556


>gi|255994774|ref|ZP_05427909.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
           49989]
 gi|255993487|gb|EEU03576.1| RNA methyltransferase, RsmD family [Eubacterium saphenum ATCC
           49989]
          Length = 179

 Score = 35.1 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD 55
           K+ DLF G G +   LE   +     C F SE N    K   AN  +        L  GD
Sbjct: 44  KVADLFAGTGAM--GLE-ALSRGAASCIF-SENNISMQKILAANIKSVGADSSAELHRGD 99

Query: 56  IAKIKTQDIPDHDV 69
                 +   D D+
Sbjct: 100 YRSAIDKTGTDVDI 113


>gi|219124256|ref|XP_002182424.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406385|gb|EEC46325.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 587

 Score = 35.1 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I D FCG+G + L L  +   RN    ++++ NP +V+  + N
Sbjct: 373 IADPFCGVGALCL-LAASLPQRNC-TIWANDWNPKAVEYLREN 413


>gi|224076024|ref|XP_002304878.1| hypothetical protein POPTRDRAFT_555246 [Populus trichocarpa]
 gi|222842310|gb|EEE79857.1| hypothetical protein POPTRDRAFT_555246 [Populus trichocarpa]
          Length = 250

 Score = 35.1 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 66 DHDVLLAGFPCQPFS 80
          D DV+  G PCQ  S
Sbjct: 72 DVDVICGGPPCQGIS 86


>gi|217973804|ref|YP_002358555.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS223]
 gi|217498939|gb|ACK47132.1| C-5 cytosine-specific DNA methylase [Shewanella baltica OS223]
          Length = 555

 Score = 35.1 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 36 NPYSVKTYQANFPNTLIFG----DIAKIKTQDIPDHDVLLAGFPCQPFSQA 82
          +P ++  +  N PNTL +     DI  ++       D+      C+ FS+A
Sbjct: 34 DPDAIAMHSVNHPNTLHYCESVFDIDPVQATAGKPVDLAWFSPDCKHFSKA 84


>gi|306478566|gb|ADM89620.1| truncated DNA-methyltransferase 3a [Felis catus]
          Length = 98

 Score = 35.1 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 54 GDIAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
          GD+  +  + I +    D+++ G PC   S 
Sbjct: 6  GDVRSVTQKHIQEWGPFDLVIGGSPCNDLSI 36


>gi|195997797|ref|XP_002108767.1| hypothetical protein TRIADDRAFT_18638 [Trichoplax adhaerens]
 gi|190589543|gb|EDV29565.1| hypothetical protein TRIADDRAFT_18638 [Trichoplax adhaerens]
          Length = 373

 Score = 35.1 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
           I DL+ GIG   L       H   +   + E NP++V+  + 
Sbjct: 205 IVDLYAGIGYFVLPY---LIHAKAKFVHACEWNPHAVEALEK 243


>gi|153835098|ref|ZP_01987765.1| putative methyltransferase [Vibrio harveyi HY01]
 gi|148868448|gb|EDL67556.1| putative methyltransferase [Vibrio harveyi HY01]
          Length = 199

 Score = 35.1 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           K  DLF G GG  L  E        +     E+NP + +  Q N   +L   +I  + T 
Sbjct: 62  KCLDLFAGSGG--LGFESASRQA--DQVTMIELNPQAFQQLQKN-VASLNANNIQVVNTD 116

Query: 63  DI 64
            I
Sbjct: 117 AI 118


>gi|134079238|emb|CAK40721.1| unnamed protein product [Aspergillus niger]
          Length = 266

 Score = 35.1 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +    +   +     ++ E NP  ++  + N          T   GD 
Sbjct: 105 LVDAFAGAGGNSIAFALSGRWKR---VYAIEKNPAVLQCAKHNAKIYGVADKITWFEGDC 161

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +D+  + V+ A  P
Sbjct: 162 FEIIKNQLKDLAPYSVVFASPP 183


>gi|118431330|ref|NP_147718.2| hypothetical protein APE_1106.1 [Aeropyrum pernix K1]
 gi|116062653|dbj|BAA80091.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 344

 Score = 35.1 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 10/39 (25%)

Query: 3   KITDLFCGIGGIRL---DLEQTFNHRNVECFFSSEINPY 38
           ++ D+F G+GG  +    L +           +S+INP+
Sbjct: 188 RVLDMFSGVGGFSIHTASLRRAS-------VVASDINPH 219


>gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 463

 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 3   KITDLFCGIGGIRLDLEQTFNH-RNVECFFSS 33
           K+ DLFCG+G   L   +       +E   +S
Sbjct: 317 KMIDLFCGVGTFSLPFAKRVKALAGIEIVETS 348


>gi|332290054|ref|YP_004420906.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432950|gb|AEC18009.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 387

 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 19/83 (22%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFS---SEINPYSVKT----------YQANFPNTLI 52
           DLFCG+GG    L      + VE   S    EI+  ++++          Y A F +   
Sbjct: 244 DLFCGVGGF--GLHCALARKKVEPEVSLVGIEISESAIRSARLAAEKAGLYNAIFQDL-- 299

Query: 53  FGDIAKIKTQDIPDHDVLLAGFP 75
             D +K +       D+++   P
Sbjct: 300 --DASKFQANQGDKPDLVIVNPP 320


>gi|39996552|ref|NP_952503.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|51316711|sp|Q74D67|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452
 gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
 gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
          Length = 495

 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 4   ITDLFCGIGGIRLDLEQ-TFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           + DL+CGIGGI L L         +E   ++  +  S          +   GD A++  +
Sbjct: 324 VVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEE 383

Query: 63  DIPD---HDVLLAGFP 75
            + +    D+++   P
Sbjct: 384 LVEEGERLDLVVLNPP 399


>gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 433

 Score = 35.1 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-----FPNTLI-FGDIA 57
           I DL    GG           R      S ++N   ++  + N     F N ++   D  
Sbjct: 259 ILDLCAAPGG--KTFNCAEVTRGF--VVSCDVNKSKIERLRENLLRLGFDNVVVAENDAL 314

Query: 58  KIKTQDIPDHDVLLAGFPCQPF 79
            +    +   D+++A  PC  F
Sbjct: 315 TLNEDFVGKFDIVIADLPCSGF 336


>gi|311896515|dbj|BAJ28923.1| hypothetical protein KSE_31130 [Kitasatospora setae KM-6054]
          Length = 393

 Score = 35.1 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DL CGIGG  + L +           + + +  + +  +AN    L    + +++  
Sbjct: 99  RLADLCCGIGGDAIALARAGIA-----VLAVDRDELTCEVARAN-AAALGVAKLVEVRRA 152

Query: 63  DIPDHDVLLAGF 74
           D+ D D   AGF
Sbjct: 153 DVADVD--TAGF 162


>gi|218460006|ref|ZP_03500097.1| DNA-cytosine methyltransferase [Rhizobium etli Kim 5]
          Length = 343

 Score = 35.1 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 69  VLLAGFPCQPFSQAG 83
           VL+ G PCQ +S  G
Sbjct: 97  VLIGGPPCQAYSLVG 111


>gi|227488104|ref|ZP_03918420.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
          51867]
 gi|227541501|ref|ZP_03971550.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
          51866]
 gi|227091966|gb|EEI27278.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
          51867]
 gi|227182783|gb|EEI63755.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
          51866]
          Length = 190

 Score = 35.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41
          ++ DLF G G   L LE     R  E     E NP +  
Sbjct: 46 RVLDLFAGSG--ALGLEAA--SRGAEMVVLVESNPKAAA 80


>gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 35.1 bits (81), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 3   KITDLFCGIGGIRL-DLEQTFNHRNVECF-FSSEINPYSVKTYQAN-FPNTLIFGDIAKI 59
              D FCG+G + L    Q      +EC   + E +  +    Q N   N + + D A+ 
Sbjct: 308 TFLDAFCGVGTMTLIAAGQAKECIGIECVPQAIE-DANANA--QLNQISNAVFYCDHAES 364

Query: 60  KTQDIPDHDVLLAGFP 75
           K Q + D DV+    P
Sbjct: 365 KIQSLKDIDVVFLNPP 380


>gi|55378190|ref|YP_136040.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55230915|gb|AAV46334.1| predicted methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 326

 Score = 35.1 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 14/74 (18%)

Query: 6   DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDIAK 58
           D+F G+G   +   +    R   C  + +IN  +++  QAN          T I GD+ +
Sbjct: 180 DMFAGVGPFAIPFAK----RGASCVGT-DINETAIEYLQANAERNGVADRMTGICGDVRE 234

Query: 59  I--KTQDIPDHDVL 70
           +  + +D  D  V+
Sbjct: 235 VAGEYEDWADRVVM 248


>gi|302383493|ref|YP_003819316.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194121|gb|ADL01693.1| methyltransferase [Brevundimonas subvibrioides ATCC 15264]
          Length = 188

 Score = 35.1 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +++ DLF G G   L  E         C F  E +  +    + N
Sbjct: 48 MRVMDLFAGSG--ALGFEAISRGAAF-CLF-VETDELARGVIREN 88


>gi|121699691|ref|XP_001268111.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
 gi|119396253|gb|EAW06685.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
          Length = 238

 Score = 35.1 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
           + D F G GG  +   +T   +     ++ E NP  ++  + N          T   GD 
Sbjct: 77  LVDAFAGAGGNTIAFARTGKWKR---VYAIEKNPAVLQCAKHNAKVYGVADKITWFQGDC 133

Query: 56  --IAKIKTQDIPDHDVLLAGFP 75
             I K + +++  + ++ A  P
Sbjct: 134 FEILKNQLKELAPYSIVFASPP 155


>gi|51891179|ref|YP_073870.1| hypothetical protein STH41 [Symbiobacterium thermophilum IAM 14863]
 gi|51854868|dbj|BAD39026.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 421

 Score = 34.7 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 7   LFCGI---GGIR----LDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
           LF GI   GG+       + +       +  +  +I+  +  TYQ 
Sbjct: 314 LFAGIRLDGGLDPEQEEGVRRALRAAGFDPDYYYQIDRAASATYQY 359


>gi|168043495|ref|XP_001774220.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674488|gb|EDQ60996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 480

 Score = 34.7 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKI 59
           I D+F GIG   +   Q          +++++NP SVK  + N        DI K+
Sbjct: 228 IVDMFAGIGPFAIPAAQQGCA-----VYANDLNPTSVKFLKLN-------SDINKV 271


>gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 470

 Score = 34.7 bits (80), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 3   KITDLFCGIGGIRLDLE-QTFNHRNVECFFS 32
           ++ DL+CGIGGI L L  +      +E   +
Sbjct: 324 RVLDLYCGIGGISLFLAGKAREVLGIEVVEA 354


>gi|332158500|ref|YP_004423779.1| methyltransferase related protein [Pyrococcus sp. NA2]
 gi|331033963|gb|AEC51775.1| methyltransferase related protein [Pyrococcus sp. NA2]
          Length = 204

 Score = 34.7 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 14/79 (17%)

Query: 3   KIT-DLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-----TLIFGDI 56
           K+  DL  G G +             +  ++ EI+  +V+  + N         +  GD+
Sbjct: 51  KVIADLGAGTGVLSYGA----LLLGAKKVYAVEIDSEAVEILKENLKEFKGKFEVFLGDV 106

Query: 57  AKIKTQDIPDHDVLLAGFP 75
           +  K       D ++   P
Sbjct: 107 SSFKV----KVDTVIMNPP 121


>gi|303245504|ref|ZP_07331788.1| methyltransferase [Desulfovibrio fructosovorans JJ]
 gi|302493353|gb|EFL53215.1| methyltransferase [Desulfovibrio fructosovorans JJ]
          Length = 202

 Score = 34.7 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ DLF G G   + +E      +  C F  E NP   K  + N
Sbjct: 49 RVLDLFAGAG--SVGIEALSRGADF-CLF-VEKNPAVAKMLREN 88


>gi|108562476|ref|YP_626792.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori
          HPAG1]
 gi|217032847|ref|ZP_03438326.1| hypothetical protein HPB128_165g6 [Helicobacter pylori B128]
 gi|298737005|ref|YP_003729535.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori B8]
 gi|107836249|gb|ABF84118.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori
          HPAG1]
 gi|216945430|gb|EEC24094.1| hypothetical protein HPB128_165g6 [Helicobacter pylori B128]
 gi|298356199|emb|CBI67071.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori B8]
          Length = 47

 Score = 34.7 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI 35
          L    LF G G     L         EC  ++EI
Sbjct: 7  LTYISLFSGAGVGCYGL----LEEGFECVATNEI 36


>gi|34540441|ref|NP_904920.1| ribosomal protein L11 methyltransferase [Porphyromonas gingivalis
           W83]
 gi|34396754|gb|AAQ65819.1| ribosomal protein L11 methyltransferase [Porphyromonas gingivalis
           W83]
          Length = 311

 Score = 34.7 bits (80), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 18/80 (22%)

Query: 2   LKITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           L++ D+  G G GI   L             + +I+ + ++    N        DI  I 
Sbjct: 172 LRVLDM--GCGTGI---LAILARKLGASSVTAIDIDDWCIR----NTGENAALNDIRDID 222

Query: 61  TQ--------DIPDHDVLLA 72
            +        D P  D+++A
Sbjct: 223 VRIGDASLLADCPMFDLIIA 242


>gi|209696303|ref|YP_002264234.1| hypothetical protein VSAL_I2904 [Aliivibrio salmonicida LFI1238]
 gi|208010257|emb|CAQ80588.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 202

 Score = 34.7 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           +  DLF G GG  L  E     R  E     E+N  +    + N
Sbjct: 64  RCLDLFSGSGG--LGFEAA--SRGAEHVVMLELNKQAHTQLKQN 103


>gi|38605127|sp|P60093|PRMA_PORGI RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 290

 Score = 34.7 bits (80), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 18/80 (22%)

Query: 2   LKITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           L++ D+  G G GI   L             + +I+ + ++    N        DI  I 
Sbjct: 151 LRVLDM--GCGTGI---LAILARKLGASSVTAIDIDDWCIR----NTGENAALNDIRDID 201

Query: 61  TQ--------DIPDHDVLLA 72
            +        D P  D+++A
Sbjct: 202 VRIGDASLLADCPMFDLIIA 221


>gi|260892044|ref|YP_003238141.1| methyltransferase [Ammonifex degensii KC4]
 gi|260864185|gb|ACX51291.1| methyltransferase [Ammonifex degensii KC4]
          Length = 189

 Score = 34.7 bits (80), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          +  DLF G GG  + +E     R  +     E +P +VK  + N
Sbjct: 44 RFLDLFAGTGG--VGIEAL--SRGAKFAVFVERDPRAVKLIREN 83


>gi|171911252|ref|ZP_02926722.1| C-5 cytosine-specific DNA methylase [Verrucomicrobium spinosum
          DSM 4136]
          Length = 497

 Score = 34.7 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVEC--FFSSEINPYSVKTYQANFPNTLIF-GDIAK 58
          ++I DLFCG GG     +               +     +V+T +AN P++  +   +  
Sbjct: 6  IRIADLFCGGGGTTTGAKLACYDLGYNVDLVGVNHWER-AVETSRANHPDSRHYCASLDN 64

Query: 59 IKTQDI---PDHDVLLAGFPCQPFSQA 82
          I  + I    + DVL A   C   S A
Sbjct: 65 INPRHIYGEGELDVLWASPECTNHSPA 91


>gi|19552546|ref|NP_600548.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
          13032]
 gi|62390210|ref|YP_225612.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
          13032]
 gi|145295469|ref|YP_001138290.1| N6-adenine-specific methylase [Corynebacterium glutamicum R]
 gi|21324096|dbj|BAB98721.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
          13032]
 gi|41325546|emb|CAF20026.1| N6-adenine-specific methylase [Corynebacterium glutamicum ATCC
          13032]
 gi|140845389|dbj|BAF54388.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 194

 Score = 34.7 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ D+F G G   L LE     R  +     E NP +V+  + N
Sbjct: 48 RVLDIFAGSG--ALGLEAA--SRGADEVVLVESNPKAVEVIRRN 87


>gi|317472740|ref|ZP_07932053.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899766|gb|EFV21767.1| RsmD family RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 187

 Score = 34.7 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 4  ITDLFCGIGGIRL-DLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD 55
            DLF G G I +  L +   H         E N  +    + N  +T +  D
Sbjct: 45 FLDLFAGSGAIGIEALSRGCKHAVF-----VEKNKKAAACIRYNLIHTKLIND 92


>gi|225451414|ref|XP_002273563.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082357|emb|CBI21362.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score = 34.7 bits (80), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQA 45
           + DL+ G G I L L  T   R+V+C    EIN  +  +++ 
Sbjct: 287 VADLYAGAGVIGLSLAATRKCRSVKCI---EINKEARLSFEK 325


>gi|194246673|ref|YP_002004312.1| probable dimethyladenosine transferase [Candidatus Phytoplasma
           mali]
 gi|193807030|emb|CAP18466.1| probable dimethyladenosine transferase [Candidatus Phytoplasma
           mali]
          Length = 474

 Score = 34.7 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKI 59
           KI +L  GIG I    +   +   V+   S EIN  S    +  FP  T+I GD+  +
Sbjct: 291 KILELGAGIGNIT---QYLVDKYGVQNIISIEINSDSCDFLRKRFPELTVIQGDVKDV 345


>gi|119714686|ref|YP_921651.1| HemK family modification methylase [Nocardioides sp. JS614]
 gi|119535347|gb|ABL79964.1| modification methylase, HemK family [Nocardioides sp. JS614]
          Length = 299

 Score = 34.7 bits (80), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-PNTLIFGD 55
            DL CG G I + L        V    +++I+P +V+  + N  P+ +  GD
Sbjct: 108 VDLCCGTGAIGVALLAAVPGAEVH---AADIDPAAVRCARRNLPPDRVHEGD 156


>gi|209544778|ref|YP_002277007.1| DNA-cytosine methyltransferase [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209532455|gb|ACI52392.1| DNA-cytosine methyltransferase [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 435

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 23/76 (30%)

Query: 27 VECFFSSEINPYSVKTYQAN----------FPN-----TLIFGDIAKIKTQDIPD----H 67
                ++    +  TY+AN          +P           D+      ++ +     
Sbjct: 28 FAIEAHAD----AFDTYRANLLDSGRNRHSWPAWLDKRAWQAQDVLVHHETELAELRGKV 83

Query: 68 DVLLAGFPCQPFSQAG 83
          D++  G PCQ FS  G
Sbjct: 84 DLVAGGPPCQGFSMNG 99


>gi|162149538|ref|YP_001603999.1| cytosine-specifi methyltransferase DdeI [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161788115|emb|CAP57719.1| putative cytosine-specifi methyltransferase DdeI
          [Gluconacetobacter diazotrophicus PAl 5]
          Length = 435

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 23/76 (30%)

Query: 27 VECFFSSEINPYSVKTYQAN----------FPN-----TLIFGDIAKIKTQDIPD----H 67
                ++    +  TY+AN          +P           D+      ++ +     
Sbjct: 28 FAIEAHAD----AFDTYRANLLDSGRNRHSWPAWLDKRAWQAQDVLVHHETELAELRGKV 83

Query: 68 DVLLAGFPCQPFSQAG 83
          D++  G PCQ FS  G
Sbjct: 84 DLVAGGPPCQGFSMNG 99


>gi|291444170|ref|ZP_06583560.1| methytransferase [Streptomyces roseosporus NRRL 15998]
 gi|291347117|gb|EFE74021.1| methytransferase [Streptomyces roseosporus NRRL 15998]
          Length = 266

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK-IK 60
           + DL CG G + + L    +  ++    + ++ P +V+  + N  +   +  GD+   + 
Sbjct: 101 VVDLCCGSGALGVALATALDRVDLH---ACDVEPAAVRCARRNVGDLGEVYEGDLFDPLP 157

Query: 61  TQDIPDHDVLLAGFP 75
            +     DVLLA  P
Sbjct: 158 ARLRGRVDVLLANVP 172


>gi|239940731|ref|ZP_04692668.1| putative methylase [Streptomyces roseosporus NRRL 15998]
 gi|239987209|ref|ZP_04707873.1| putative methylase [Streptomyces roseosporus NRRL 11379]
          Length = 263

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN--TLIFGDIAK-IK 60
           + DL CG G + + L    +  ++    + ++ P +V+  + N  +   +  GD+   + 
Sbjct: 98  VVDLCCGSGALGVALATALDRVDLH---ACDVEPAAVRCARRNVGDLGEVYEGDLFDPLP 154

Query: 61  TQDIPDHDVLLAGFP 75
            +     DVLLA  P
Sbjct: 155 ARLRGRVDVLLANVP 169


>gi|83645219|ref|YP_433654.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Hahella chejuensis KCTC 2396]
 gi|83633262|gb|ABC29229.1| Methylase of polypeptide chain release factors [Hahella chejuensis
           KCTC 2396]
          Length = 301

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           L+I DL CG G I   +         E   + +I+P ++   + N       GD  K+  
Sbjct: 131 LRILDLCCGSGCI--GIAAAHVFPEAEVVLA-DISPLALDVARRN-VARHHLGDRCKVVE 186

Query: 62  QDIPD-----HDVLLAGFP 75
            D+ D      DV+L   P
Sbjct: 187 SDMFDALQGEFDVILTNPP 205


>gi|325116460|emb|CBZ52014.1| hypothetical protein NCLIV_018040 [Neospora caninum Liverpool]
          Length = 828

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D F G+G   L L Q  N        +++ NP +V   + N
Sbjct: 537 VLDCFAGVGAFSLFLAQRRNCL----VLANDFNPNAVICMKKN 575


>gi|296113394|ref|YP_003627332.1| ribosomal large subunit L3 glutamine methyltransfere [Moraxella
           catarrhalis RH4]
 gi|295921088|gb|ADG61439.1| ribosomal large subunit L3 glutamine methyltransfere [Moraxella
           catarrhalis RH4]
          Length = 370

 Score = 34.7 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I DL  G G I + L + F   N++   +++I+  +++    N  +  +   +  +++ 
Sbjct: 187 RILDLCTGSGCIAIALAKAFPDANID---ATDIDKDALEVAWTNVEHHELAHQVNLLESN 243


>gi|91094613|ref|XP_968719.1| PREDICTED: similar to CG32281 CG32281-PA [Tribolium castaneum]
 gi|270016438|gb|EFA12884.1| hypothetical protein TcasGA2_TC011563 [Tribolium castaneum]
          Length = 507

 Score = 34.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFP 48
           + D+F G+G   + L +       +C  F++++NP S K    NF 
Sbjct: 232 VFDVFAGVGPFSVPLARK------KCQVFANDLNPESFKWLNHNFK 271


>gi|187929431|ref|YP_001899918.1| C-5 cytosine-specific DNA methylase [Ralstonia pickettii 12J]
 gi|187726321|gb|ACD27486.1| C-5 cytosine-specific DNA methylase [Ralstonia pickettii 12J]
          Length = 559

 Score = 34.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 33/104 (31%)

Query: 8   FCGIGGIRLDLEQTFNHRN-----VECFFSSEINPYS-------------------VKTY 43
             G+GG     ++  +         +C    + +P +                    + Y
Sbjct: 13  CSGLGGGAKGFKKAMSQVGAKTATWKCIGGIDNDPAAARDFHKLVGVPCTVMDLFTRQQY 72

Query: 44  QANFPNTLIFG-------DIAKIKTQDIPDHDVLLAGFPCQPFS 80
            A        G       DI +    + P    +    PC+  S
Sbjct: 73  IAFHGKEPPHGWREATAEDIRRAAGYEHPHSVFI--SSPCKGAS 114


>gi|326559238|gb|EGE09669.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis 46P47B1]
 gi|326559877|gb|EGE10277.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis 7169]
 gi|326560774|gb|EGE11141.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis 103P14B1]
 gi|326563515|gb|EGE13774.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis 12P80B1]
 gi|326569637|gb|EGE19689.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis BC1]
 gi|326570118|gb|EGE20163.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis BC8]
 gi|326570856|gb|EGE20880.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis BC7]
 gi|326574405|gb|EGE24347.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis 101P30B1]
 gi|326576001|gb|EGE25924.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis CO72]
 gi|326576413|gb|EGE26322.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Moraxella catarrhalis O35E]
          Length = 370

 Score = 34.7 bits (80), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I DL  G G I + L + F   N++   +++I+  +++    N  +  +   +  +++ 
Sbjct: 187 RILDLCTGSGCIAIALAKAFPDANID---ATDIDKDALEVAWTNVEHHELAHQVNLLESN 243


>gi|148377597|ref|YP_001256473.1| CpG DNA methylase [Mycoplasma agalactiae PG2]
 gi|148291643|emb|CAL59029.1| CpG DNA methylase [Mycoplasma agalactiae PG2]
          Length = 372

 Score = 34.7 bits (80), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 55  DIAKIKTQDIPD--HDVLLAGFPCQPFSQA 82
           DI  +    I     D++   FPCQ  S A
Sbjct: 75  DINCLDPAIIKKLKIDLITYSFPCQGLSIA 104


>gi|296283759|ref|ZP_06861757.1| tRNA and rRNA cytosine-C5-methylase [Citromicrobium bathyomarinum
           JL354]
          Length = 396

 Score = 34.7 bits (80), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP 37
            + DL  G GG  L L     +R      +S+ + 
Sbjct: 204 TVIDLCAGAGGKTLALAAAMENRGRLI--ASDTDK 236


>gi|329765827|ref|ZP_08257393.1| protein of unknown function Met10 [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137670|gb|EGG41940.1| protein of unknown function Met10 [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 275

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
            + ++F G+G   +        +  +C  +S +INP +VK  + N  +  I G++  I  
Sbjct: 123 TVVNMFAGVGMFSI-----MIAKKKKCTVYSIDINPIAVKLCERNILSNKILGNVISING 177

Query: 62  Q 62
            
Sbjct: 178 D 178


>gi|329947297|ref|ZP_08294564.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525514|gb|EGF52558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 412

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN 36
           ++ DLFCG+GG  L L             +S I+
Sbjct: 261 RVWDLFCGVGGFALALAAPGRRVLGVEVSASAID 294


>gi|325066757|ref|ZP_08125430.1| 23S rRNA methyluridine methyltransferase [Actinomyces oris K20]
          Length = 317

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN 36
           ++ DLFCG+GG  L L             +S I+
Sbjct: 175 RVWDLFCGVGGFALALAAPGRRVLGVEVSASAID 208


>gi|66805897|ref|XP_636670.1| hypothetical protein DDB_G0288547 [Dictyostelium discoideum AX4]
 gi|60465061|gb|EAL63166.1| hypothetical protein DDB_G0288547 [Dictyostelium discoideum AX4]
          Length = 345

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN---FPNTLIFGDIAKI 59
            + DLFCG GG  +    T N        S +++P  +   + N   + ++    +I  +
Sbjct: 174 TLVDLFCGAGGNTIQFSFTCN-----VVVSVDLDPMKLLMAKHNSWVYGHSSENTNIEFV 228

Query: 60  KTQDIP----DHDVLLAGFP 75
            +  +       DV+    P
Sbjct: 229 NSDAMNLSNLKADVIFLSPP 248


>gi|88602122|ref|YP_502300.1| hypothetical protein Mhun_0829 [Methanospirillum hungatei JF-1]
 gi|88187584|gb|ABD40581.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 288

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I D+F GIG   L + +     +     + EINP +V   + N
Sbjct: 152 ICDMFAGIGYFTLPMAKAGGFIH-----ALEINPDAVHYLEKN 189


>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
 gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 198

 Score = 34.3 bits (79), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R +E     + +  +V+T + N
Sbjct: 46 LDLFAGSGG--LGIEAL--SRGIERVIFVDQDRKAVQTVRKN 83


>gi|330988818|gb|EGH86921.1| C-5 cytosine-specific DNA methylase [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 292

 Score = 34.3 bits (79), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 52 IFGDIAKI-KTQDIPDHDVLLAGFPCQPFSQAG 83
          I  D+  + +    P+ D+++AG PC   S+AG
Sbjct: 13 ICADVRDVQRGSGTPECDLVVAGIPCTGASRAG 45


>gi|328706457|ref|XP_003243103.1| PREDICTED: hypothetical protein LOC100570687 [Acyrthosiphon pisum]
          Length = 426

 Score = 34.3 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 18/80 (22%)

Query: 5   TDLFCGIGG--IRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGD 55
            D FCG GG  I+L               + +I+PY +K  + N            I G+
Sbjct: 265 LDPFCGAGGNIIQLAFTS-------NLVIAVDIDPYKIKLARNNAEIYGVAHKIEFIVGN 317

Query: 56  IAKIKTQDIPDHDVLLAGFP 75
             +I +  +   DV+    P
Sbjct: 318 FFEICS--MLKADVICMSPP 335


>gi|83589787|ref|YP_429796.1| methyltransferase small [Moorella thermoacetica ATCC 39073]
 gi|83572701|gb|ABC19253.1| Methyltransferase small [Moorella thermoacetica ATCC 39073]
          Length = 192

 Score = 34.3 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
            DLF G G   + LE     R        E N  ++K   AN   T + G
Sbjct: 46 FLDLFAGSG--AVGLEAL--SRGARRVVFVENNRQALKCLTANIKATGLEG 92


>gi|38233636|ref|NP_939403.1| HemK family methytransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199896|emb|CAE49562.1| HemK-family methytransferase [Corynebacterium diphtheriae]
          Length = 272

 Score = 34.3 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPN--TLIFGDIAKIK 60
           + DL  G G     L     H + EC  ++ E++  ++   + N P+   L+ GD+    
Sbjct: 109 VVDLCTGSG----ALAAYIAHEHPECSVWAVELSDAAMAFARRNLPDRVHLVQGDVTD-- 162

Query: 61  TQDIPDH-----DVLLAGFPCQPFS 80
             +I DH     D+L++  P  P S
Sbjct: 163 -PEILDHLSGAVDLLVSNPPYVPLS 186


>gi|297161741|gb|ADI11453.1| HemK family modification methylase [Streptomyces bingchenggensis
           BCW-1]
          Length = 268

 Score = 34.3 bits (79), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---NTLIFGDIAK-I 59
           + DL CG G +   L       +    ++++I P +V+  + N P     +  GD+ + +
Sbjct: 99  VVDLCCGSGAVGAALITALGADSPIELYAADIEPAAVRCARRNIPADKGRVYEGDLYEPL 158

Query: 60  KTQDIPDHDVLLAGFP 75
                   DVL+A  P
Sbjct: 159 PAALRGRVDVLVANAP 174


>gi|325678315|ref|ZP_08157941.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
 gi|324109995|gb|EGC04185.1| RNA methyltransferase, RsmD family [Ruminococcus albus 8]
          Length = 182

 Score = 34.3 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
          + DLF G G  ++ +E      +  C F  + NP +V+  + N  + 
Sbjct: 45 VLDLFAGSG--QMGIEALSRDAS-HCVF-VDNNPAAVQVIKENISDC 87


>gi|110667583|ref|YP_657394.1| methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109625330|emb|CAJ51752.1| predicted methyltransferase [Haloquadratum walsbyi DSM 16790]
          Length = 329

 Score = 34.3 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + D+F G+G            R  +   + E+N  +V+    N          T++ GD+
Sbjct: 180 VIDMFAGVG----PFAVPMAARGADVVAA-ELNENAVEYLSINAEQNDVDDNFTIVSGDV 234

Query: 57  AKIKTQDIPDHDVLLA 72
             +    I   D L+ 
Sbjct: 235 RTLPDSYIDWADRLIM 250


>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis]
 gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]
          Length = 577

 Score = 34.3 bits (79), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 4   ITDLFCGIG--GIRLDLEQTFNHRNVECF--FSSEINPYSVKTYQAN--FPNTLIFGDIA 57
           + DLFCG G  G+ L   +  +    E      S+    + +  + N     T + GD+ 
Sbjct: 426 VLDLFCGTGTIGLTLA-GRAKHVYGYEVVPQAISD----ARRNAELNGITNATFVQGDLN 480

Query: 58  KIKT---QDIPDHDVLL 71
           KI      + P  D+++
Sbjct: 481 KISDSFGNNFPKPDIVI 497


>gi|221054550|ref|XP_002258414.1| met-10+ like protein [Plasmodium knowlesi strain H]
 gi|193808483|emb|CAQ39186.1| met-10+ like protein, putative [Plasmodium knowlesi strain H]
          Length = 698

 Score = 34.3 bits (79), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECF-FSSEINPYSVKTYQANFPNTLI 52
           I DLF G+G   L L +       +C  FS++IN ++      NF N  I
Sbjct: 407 IVDLFAGVGIFSLHLSKK------KCLCFSNDINSHA-----YNFMNVNI 445


>gi|84686808|ref|ZP_01014695.1| DNA methylase, C-5 cytosine-specific family protein
          [Maritimibacter alkaliphilus HTCC2654]
 gi|84665239|gb|EAQ11718.1| DNA methylase, C-5 cytosine-specific family protein
          [Rhodobacterales bacterium HTCC2654]
          Length = 336

 Score = 34.3 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 66 DHDVLLAGFPCQPFSQ 81
          + D++  G PCQ FS 
Sbjct: 7  ELDLVAGGPPCQGFSI 22


>gi|33620521|ref|NP_891714.1| hypothetical protein RB49p143 [Enterobacteria phage RB49]
 gi|33347988|gb|AAQ15389.1| hypothetical protein RB49ORF143w [Enterobacteria phage RB49]
          Length = 279

 Score = 34.3 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           K+ DL  GIG +   +        + C    E+NP   +  +   P    I  D+ + ++
Sbjct: 67  KVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFES 123

Query: 62  QDIPDHDVLLAGFP 75
            +    DV+++  P
Sbjct: 124 NE--KFDVVISNPP 135


>gi|291336630|gb|ADD96176.1| methyltransferase [uncultured organism MedDCM-OCT-S05-C185]
          Length = 141

 Score = 34.3 bits (79), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN-------FPNTLIFGDI 56
           + D F G G   L LE       +      E +  ++KT + N           +I  D 
Sbjct: 50  VIDAFAGSG--ALGLEALSRGAALSI--FIENDQNALKTLEQNIRKLDYHHRARIIRADA 105

Query: 57  AKIKTQDIPDHDVLLAGFP 75
             I      +  +++   P
Sbjct: 106 CTIDIPATEEAGLVIMDPP 124


>gi|332185292|ref|ZP_08387041.1| RNA methyltransferase, RsmD family [Sphingomonas sp. S17]
 gi|332015016|gb|EGI57072.1| RNA methyltransferase, RsmD family [Sphingomonas sp. S17]
          Length = 178

 Score = 34.3 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
           + D F G G   L +E         C F  E +  ++   +AN       GD+       
Sbjct: 48  VGDFFAGSG--ALGIEALSRGAG-SCLF-VEQDRNALDALRANLEKLGAKGDVRATSVMA 103

Query: 64  IPDH----DVLLAGFP 75
           +       DV+L   P
Sbjct: 104 LGPARQPLDVVLMDPP 119


>gi|157311444|ref|YP_001469487.1| putative methyltransferase [Enterobacteria phage Phi1]
 gi|149380648|gb|ABR24653.1| hypothetical protein phi1p143 [Enterobacteria phage Phi1]
          Length = 279

 Score = 34.3 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           K+ DL  GIG +   +        + C    E+NP   +  +   P    I  D+ + ++
Sbjct: 67  KVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFES 123

Query: 62  QDIPDHDVLLAGFP 75
            +    DV+++  P
Sbjct: 124 NE--KFDVVISNPP 135


>gi|300122756|emb|CBK23320.2| unnamed protein product [Blastocystis hominis]
          Length = 290

 Score = 34.3 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 5   TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINP-------YSVKTYQANFPNTLIFGDIA 57
            D F GIGG  + L +T          S E+NP       ++ K Y+ +     I GD  
Sbjct: 125 IDAFAGIGGNTIQLARTCRR-----VISIELNPQRLRMLQHNSKIYKVDHKIDCICGDST 179

Query: 58  KIKTQDIPDHDVLLAGFP 75
           K+        DV++   P
Sbjct: 180 KLLPSM--KADVVVLAPP 195


>gi|300709636|ref|YP_003735450.1| methyltransferase [Halalkalicoccus jeotgali B3]
 gi|299123319|gb|ADJ13658.1| methyltransferase [Halalkalicoccus jeotgali B3]
          Length = 338

 Score = 34.3 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           ++ D+F GIG   L + +   H       + E NP + +    N
Sbjct: 190 RVLDMFAGIGYFTLPMARAGAH-----VSAIERNPVAFRYLLEN 228


>gi|26989748|ref|NP_745173.1| DNA cytosine methyltransferase family protein [Pseudomonas putida
           KT2440]
 gi|24984641|gb|AAN68637.1|AE016493_7 DNA cytosine methyltransferase family protein [Pseudomonas putida
           KT2440]
          Length = 609

 Score = 34.3 bits (79), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 36  NPYSVKTYQANFPNTLIF-GDIAKIKTQDIP---DHDVLLAGFPCQPFSQA 82
           NP ++  ++AN   T  +  DI ++   +        +L A   C+ FS+A
Sbjct: 52  NPIAIAVHRANHRKTRHYICDIYEVDPLEATGGQPVGILWASPDCRHFSKA 102


>gi|307352708|ref|YP_003893759.1| hypothetical protein Mpet_0547 [Methanoplanus petrolearius DSM
           11571]
 gi|307155941|gb|ADN35321.1| protein of unknown function Met10 [Methanoplanus petrolearius DSM
           11571]
          Length = 304

 Score = 34.3 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 1   MLK----ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV 40
           M+K    + D+F G+G   + L            ++++INP +V
Sbjct: 158 MMKDGERLLDMFAGVGPFAITLS-----GKCSVVYANDINPAAV 196


>gi|228476084|ref|ZP_04060792.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           SK119]
 gi|314936301|ref|ZP_07843648.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           subsp. hominis C80]
 gi|228269907|gb|EEK11387.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           SK119]
 gi|313654920|gb|EFS18665.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 312

 Score = 34.3 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 9   CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPD-- 66
            GI      L    +   V+   + +I+  +V   + NF       DI  I    + +  
Sbjct: 184 SGI------LSIASHLIGVKRIKALDIDEMAVGVAKENFRKNHCENDIEAIPGNLLKEEN 237

Query: 67  --HDVLLA 72
              DV++A
Sbjct: 238 EKFDVVIA 245


>gi|289192212|ref|YP_003458153.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
 gi|288938662|gb|ADC69417.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
          Length = 248

 Score = 34.3 bits (79), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS----VKTYQANFPNT--LIFGDIA 57
           + D+F GIG   + L +   +   +  ++ E NP +     +  + N  N    I  D  
Sbjct: 98  VVDMFAGIGYFTIPLAK---YSKPKLVYAIEKNPIAYHYLCENIKLNKLNNVIPILADNR 154

Query: 58  KIKTQDIPDHDVLLAGF 74
           +++ +D+   D ++ G+
Sbjct: 155 EVELKDV--ADRVIMGY 169


>gi|300121728|emb|CBK22303.2| unnamed protein product [Blastocystis hominis]
          Length = 256

 Score = 34.3 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD- 55
           + DL+ GIG   + +      ++V CF   EIN  SV+  + N           +I GD 
Sbjct: 99  VVDLYAGIGYFTIPIAVRSGAKHVLCF---EINSDSVEALKRNIDQNGVADRCEVILGDN 155

Query: 56  -IAKIKTQDIPDHDVLLA 72
            I   + +D+ D  VLL 
Sbjct: 156 RITTRQYKDLADR-VLLG 172


>gi|238695024|ref|YP_002922218.1| hypothetical protein EpJSE_00146 [Enterobacteria phage JSE]
 gi|220029160|gb|ACL78095.1| hypothetical protein EpJSE_00146 [Enterobacteria phage JSE]
          Length = 279

 Score = 34.3 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           K+ DL  GIG +   +        + C    E+NP   +  +   P    I  D+ + ++
Sbjct: 67  KVLDLCAGIGRLSFCMLHRCKPEKIVCV---ELNPEFARIGKRLLPEAEWITSDVFEFES 123

Query: 62  QDIPDHDVLLAGFP 75
            +    DV+++  P
Sbjct: 124 NE--KFDVVISNPP 135


>gi|83649040|ref|YP_437475.1| spermidine synthase [Hahella chejuensis KCTC 2396]
 gi|83637083|gb|ABC33050.1| spermidine synthase [Hahella chejuensis KCTC 2396]
          Length = 287

 Score = 34.3 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 11  IGGIRLD-LEQTFNHRNVECFFSSEINPYSVKTYQANFPN----------TLIFGD-IAK 58
           +GG     L++   H  VE  +  EI+    +  +  FP+             FGD I  
Sbjct: 87  VGGGDCGTLKEVLKHPGVEEAWQVEIDERVTRVAEKYFPDLCTANNDPRANFFFGDGIKW 146

Query: 59  IKTQDIPDHDVLL 71
           I    +   D+++
Sbjct: 147 IADAPLESIDLII 159


>gi|126631930|gb|AAI34210.1| LOC100005455 protein [Danio rerio]
          Length = 275

 Score = 34.3 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K+ DL CG G                C  +++I+P +    + N
Sbjct: 127 KVLDLGCGCG----ASAIAARLSGASCVVANDIDPIAAIATKMN 166


>gi|261332311|emb|CBH15305.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 394

 Score = 34.3 bits (79), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGDI 56
           + D+F GIG   L L     +  V+   + E N YS      N           +  GD 
Sbjct: 231 VVDMFAGIGYFTLPL---AINGGVKIVHALEKNKYSALYLAFNAVQNKVSDLIVIHCGDN 287

Query: 57  AKIKTQDIPDHDVLLAG--FPCQPF 79
             + ++     D ++ G    C+ F
Sbjct: 288 RDMGSELCGRCDRVIMGYIPSCESF 312


>gi|238859529|ref|NP_001154967.1| methyltransferase-like protein 20 [Danio rerio]
 gi|206558236|sp|A3KP85|MET20_DANRE RecName: Full=Methyltransferase-like protein 20
          Length = 258

 Score = 34.0 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           K+ DL CG G                C  +++I+P +    + N
Sbjct: 110 KVLDLGCGCG----ASAIAARLSGASCVVANDIDPIAAIATKMN 149


>gi|319788722|ref|YP_004090037.1| methyltransferase [Ruminococcus albus 7]
 gi|315450589|gb|ADU24151.1| methyltransferase [Ruminococcus albus 7]
          Length = 182

 Score = 34.0 bits (78), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNT 50
          + DLF G G  ++ +E   +     C F  + NP +V+  + N  + 
Sbjct: 45 VLDLFAGSG--QMGIE-ALSREASHCVF-VDNNPAAVQVIKENISDC 87


>gi|306835970|ref|ZP_07468962.1| RsmD family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568136|gb|EFM43709.1| RsmD family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 200

 Score = 34.0 bits (78), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG---DIAKI 59
           K+ DLF G G   L LE      + E     E NP +V   + N       G   +  K+
Sbjct: 46  KVLDLFAGSG--ALGLEALSRGAD-EAVL-VESNPAAVSIIKHNIGVVKHPGARVEERKV 101

Query: 60  KT--QDIPD--HDVLLAGFP 75
            T     P    D++LA  P
Sbjct: 102 STYLASAPRGYFDLVLADPP 121


>gi|325290428|ref|YP_004266609.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965829|gb|ADY56608.1| methyltransferase [Syntrophobotulus glycolicus DSM 8271]
          Length = 186

 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          K+ DLF G G   L LE     R  +     E +P +    + N
Sbjct: 44 KVLDLFAGTG--NLGLEAL--SRGAQKVVLVEKDPMAWNIIKDN 83


>gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591]
          Length = 444

 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECFFS 32
           ++ DLFCG+G   L L E+      VE   +
Sbjct: 295 RVLDLFCGMGNFTLPLAERAGRVVGVEGVAA 325


>gi|295646365|gb|ADG23068.1| DNA (cytosine-5)-methyltransferase 3a [Gadus morhua]
          Length = 130

 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 54 GDIAKIKTQDIPD---HDVLLAGFPCQPFSQ 81
          GD+  +  + I +    D+++ G PC   S 
Sbjct: 19 GDVRNVTRKHIQEWGPFDLVIGGSPCNDLSI 49


>gi|167462077|ref|ZP_02327166.1| putative methyltransferase [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 88

 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          + DLF G GG  L +E     R +E     +I   S+ T + N
Sbjct: 45 VLDLFAGTGG--LGIEAL--SRGMEKGIFVDIEKKSLDTIRHN 83


>gi|266619952|ref|ZP_06112887.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288868416|gb|EFD00715.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 1013

 Score = 34.0 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVEC-FFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT 61
           I DL CG+G         FN    E   +  EI+  + K     +P   +  GDI   ++
Sbjct: 99  IADLTCGMGNF-------FNFLPAESNAYGCEIDHKAYKVAHYLYPKANIELGDIRTYES 151

Query: 62  QDIPDHDVLLAGFP 75
            DI   D ++   P
Sbjct: 152 -DI-RFDFVIGNPP 163


>gi|300779423|ref|ZP_07089281.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910]
 gi|300504933|gb|EFK36073.1| possible outer membrane protein [Chryseobacterium gleum ATCC 35910]
          Length = 1178

 Score = 34.0 bits (78), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 46  NFPNTLIFGDIAKIKTQDIPDHDVL 70
           NFP     GDI  I   DI D D+L
Sbjct: 293 NFPYE---GDINNINPNDIEDIDIL 314


>gi|13358092|ref|NP_078366.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
          str. ATCC 700970]
 gi|170762087|ref|YP_001752613.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
          str. ATCC 27815]
 gi|171920252|ref|ZP_02931618.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 1
          str. ATCC 27813]
 gi|186701746|ref|ZP_02971433.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 6
          str. ATCC 27818]
 gi|11356834|pir||D82880 cytosine-specific methyltransferase UU528 [imported] - Ureaplasma
          urealyticum
 gi|6899531|gb|AAF30941.1|AE002151_7 cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
          str. ATCC 700970]
 gi|168827664|gb|ACA32926.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 3
          str. ATCC 27815]
 gi|171902654|gb|EDT48943.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 1
          str. ATCC 27813]
 gi|186701017|gb|EDU19299.1| cytosine-specific methyltransferase [Ureaplasma parvum serovar 6
          str. ATCC 27818]
          Length = 299

 Score = 34.0 bits (78), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 67 HDVLLAGFPCQPFSQAG 83
           D+L   FPCQ  S AG
Sbjct: 15 IDLLTYSFPCQDLSTAG 31


>gi|239934324|ref|ZP_04691277.1| hypothetical protein SghaA1_39380 [Streptomyces ghanaensis ATCC
          14672]
 gi|291442775|ref|ZP_06582165.1| gp77 [Streptomyces ghanaensis ATCC 14672]
 gi|291345670|gb|EFE72626.1| gp77 [Streptomyces ghanaensis ATCC 14672]
          Length = 228

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
          L++ DL C  GG  +     +     +     +I        +  +P   +  D      
Sbjct: 13 LRVLDLCCCAGGASMG----YWLAGFDVVG-VDI------VDRPRYPFPFVRADAVTYAA 61

Query: 62 QDIPDHDVLLAGFPCQ 77
          +     D+L A +PCQ
Sbjct: 62 EQGHRFDLLHASWPCQ 77


>gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
 gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 405

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           ++ DL+ G G   L L             + E +P +V+  + N        D  ++   
Sbjct: 260 RVLDLYSGAGLFTLPLADAVGADG--QVAAVEGDPAAVRDARRN------LHDRGQVDLH 311

Query: 63  DIPDHDVLLAG 73
                DVL AG
Sbjct: 312 GGSVADVLDAG 322


>gi|226363566|ref|YP_002781348.1| methyltransferase [Rhodococcus opacus B4]
 gi|226242055|dbj|BAH52403.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 260

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF--PNTLIFGDI-AKIK 60
           + DL CG G   +          +E  ++ +I+P +V+  + N   P  +  GD+ A + 
Sbjct: 99  VVDLCCGSG--AVGAALADTLDGIE-LYAVDIDPAAVRCARRNLAEPALVFEGDLYAPLP 155

Query: 61  TQDIPDHDVLLAGFP 75
           +      D+L+A  P
Sbjct: 156 SALRGRIDILVANAP 170


>gi|91205135|ref|YP_537490.1| N6-adenine-specific methylase [Rickettsia bellii RML369-C]
 gi|157827532|ref|YP_001496596.1| N6-adenine-specific methylase [Rickettsia bellii OSU 85-389]
 gi|91068679|gb|ABE04401.1| N6-adenine-specific methylase [Rickettsia bellii RML369-C]
 gi|157802836|gb|ABV79559.1| N6-adenine-specific methylase [Rickettsia bellii OSU 85-389]
          Length = 192

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK 41
          +K+ DLF G G   L  E              +I+ +S+K
Sbjct: 52 IKVLDLFAGSG--SLAFESLSRGAGFATL--IDIDAFSLK 87


>gi|221485878|gb|EEE24148.1| met-10 domain-containing protein, putative [Toxoplasma gondii GT1]
          Length = 814

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D F G+G   L L Q  +        +++ NP +V   + N
Sbjct: 518 VLDCFAGVGAFSLFLAQRRSCL----VLANDFNPNAVLCMKKN 556


>gi|237835061|ref|XP_002366828.1| met-10 domain-containing protein [Toxoplasma gondii ME49]
 gi|211964492|gb|EEA99687.1| met-10 domain-containing protein [Toxoplasma gondii ME49]
 gi|221503756|gb|EEE29440.1| met-10 domain-containing protein, putative [Toxoplasma gondii VEG]
          Length = 814

 Score = 34.0 bits (78), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           + D F G+G   L L Q  +        +++ NP +V   + N
Sbjct: 518 VLDCFAGVGAFSLFLAQRRSCL----VLANDFNPNAVLCMKKN 556


>gi|94502134|ref|ZP_01308635.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94425736|gb|EAT10743.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 448

 Score = 34.0 bits (78), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DLF G+G   L L Q           + E++   V   Q N
Sbjct: 307 TVLDLFAGLGNFTLPLAQHAKR-----VCAVELDKKMVADLQHN 345


>gi|224002032|ref|XP_002290688.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
          CCMP1335]
 gi|220974110|gb|EED92440.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
          CCMP1335]
          Length = 203

 Score = 34.0 bits (78), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
          ++ D++ GIG   L       H       + E NP ++   + N
Sbjct: 40 RVLDMYAGIGYYTLP---ALIHGKARHVTACEWNPNAIYALRYN 80


>gi|289581698|ref|YP_003480164.1| hypothetical protein Nmag_2032 [Natrialba magadii ATCC 43099]
 gi|289531251|gb|ADD05602.1| protein of unknown function Met10 [Natrialba magadii ATCC 43099]
          Length = 409

 Score = 34.0 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           ++ D+F GIG   L + +           ++EINP + +    N
Sbjct: 231 RVFDMFAGIGYFTLPMARAGAQ-----VTATEINPTAFRYLLEN 269


>gi|197301676|ref|ZP_03166746.1| hypothetical protein RUMLAC_00402 [Ruminococcus lactaris ATCC
          29176]
 gi|197299116|gb|EDY33646.1| hypothetical protein RUMLAC_00402 [Ruminococcus lactaris ATCC
          29176]
          Length = 189

 Score = 34.0 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
            DLF G GGI   +E     R  +     E NP +++  + N
Sbjct: 45 FLDLFAGSGGI--GIEAL--SRGAKEAVFVEKNPKAMECIKEN 83


>gi|149422449|ref|XP_001520279.1| PREDICTED: similar to putative DNA methyltransferase, partial
           [Ornithorhynchus anatinus]
          Length = 343

 Score = 34.0 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 66  DHDVLLAGFPCQPFSQAG 83
             DV+L   PCQPF++ G
Sbjct: 90  SFDVMLMSPPCQPFTRTG 107


>gi|78485887|ref|YP_391812.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|78364173|gb|ABB42138.1| modification methylase, HemK family [Thiomicrospira crunogena
           XCL-2]
          Length = 310

 Score = 34.0 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQ 62
           +I DL  G G I L   Q   +  V+     +I+P +++  Q N        D+A     
Sbjct: 134 RILDLCTGSGCIGLASLQACPNATVDLV---DISPEALEVAQRNI-EMYHLDDVATAIQS 189

Query: 63  DI------PDHDVLLAGFP 75
           D+        +D++++  P
Sbjct: 190 DLFSALSGRKYDLIVSNPP 208


>gi|83854666|ref|ZP_00948196.1| DNA modification methylase M.NGOI [Sulfitobacter sp. NAS-14.1]
 gi|83842509|gb|EAP81676.1| DNA modification methylase M.NGOI [Sulfitobacter sp. NAS-14.1]
          Length = 254

 Score = 34.0 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 68 DVLLAGFPCQPFSQAG 83
          D+L  G PC PFS AG
Sbjct: 2  DLLAGGLPCPPFSVAG 17


>gi|239826501|ref|YP_002949125.1| methyltransferase [Geobacillus sp. WCH70]
 gi|239806794|gb|ACS23859.1| methyltransferase [Geobacillus sp. WCH70]
          Length = 189

 Score = 34.0 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 5  TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           DLF G GG  L +E     R ++     + +  +V+T + N
Sbjct: 46 LDLFSGSGG--LGIEAL--SRGLDRVIFVDHDAKAVQTVKKN 83


>gi|297619231|ref|YP_003707336.1| hypothetical protein Mvol_0704 [Methanococcus voltae A3]
 gi|297378208|gb|ADI36363.1| hypothetical protein Mvol_0704 [Methanococcus voltae A3]
          Length = 307

 Score = 34.0 bits (78), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSV----KTYQANFPNTLIFGDIAKI 59
           + D FCG G   L +      +  +    S+IN  ++       + NF N +   +  +I
Sbjct: 198 VLDGFCGCG--TLGMVAL--KKGAKKVIFSDINDIALYDLEYNLKINFGNEIFENNRVEI 253

Query: 60  KTQDIPDHD 68
              D  D D
Sbjct: 254 IHSDFMDLD 262


>gi|289422316|ref|ZP_06424166.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
           653-L]
 gi|289157261|gb|EFD05876.1| RNA methyltransferase, RsmD family [Peptostreptococcus anaerobius
           653-L]
          Length = 186

 Score = 34.0 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 16/78 (20%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-------TLIFGD- 55
           + DLF G G   L +E     R     +  + +P S+   ++N          T+I GD 
Sbjct: 45  VLDLFSGSG--ALGIEAL--SRGASHVYFCDKDPKSIGVTKSNISKTKFEARSTVILGDY 100

Query: 56  ---IAKIKTQDIPDHDVL 70
              I+ I ++     D++
Sbjct: 101 LKAISNISSKK-EKMDII 117


>gi|283856450|ref|YP_163055.2| Fmu (Sun) domain-containing protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|283775454|gb|AAV89944.2| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 408

 Score = 34.0 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 2   LKITDLFCGIGGIRLDL 18
           +K+ DL  G GG  L L
Sbjct: 212 MKVIDLCAGAGGKSLAL 228


>gi|260752276|ref|YP_003225169.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551639|gb|ACV74585.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 408

 Score = 34.0 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 2   LKITDLFCGIGGIRLDL 18
           +K+ DL  G GG  L L
Sbjct: 212 MKVIDLCAGAGGKSLAL 228


>gi|241761711|ref|ZP_04759798.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374019|gb|EER63552.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 408

 Score = 34.0 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 2   LKITDLFCGIGGIRLDL 18
           +K+ DL  G GG  L L
Sbjct: 212 MKVIDLCAGAGGKSLAL 228


>gi|46447632|ref|YP_008997.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|51316627|sp|Q6M9M7|Y1998_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1998
 gi|46401273|emb|CAF24722.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 383

 Score = 34.0 bits (78), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTY 43
           K+ + F G+G   + L        ++C    EINP+S + +
Sbjct: 241 KVVEFFAGVG--TIGLSVAAKCSWIKCE---EINPHSKECF 276


>gi|147771321|emb|CAN71866.1| hypothetical protein VITISV_027340 [Vitis vinifera]
          Length = 374

 Score = 34.0 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)

Query: 55 DIAKIKTQDIP-DHDVLLAGFPCQPFS 80
          DI  +    +P   D +  G PCQ FS
Sbjct: 27 DINNLP---LPGQVDFINGGPPCQGFS 50


>gi|6272296|gb|AAF06073.1|AF072715_4 putative methylase [Mycoplasma mycoides subsp. capri]
          Length = 390

 Score = 34.0 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 55  DIAKIKTQDIPD-HDVLLAGFPCQPFSQAG 83
           +I ++ T  +P   D+L   FPCQ  SQ G
Sbjct: 134 NIKELNT--LPKNIDILTYSFPCQDISQQG 161


>gi|86133093|ref|ZP_01051675.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85819956|gb|EAQ41103.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 185

 Score = 34.0 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 11/78 (14%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG------DIA 57
           + DLF G G I       F  R  +  ++ + N   ++ Y  N    L         D+ 
Sbjct: 47  VIDLFSGTGNISY----EFASRGTKNIYAIDANHNCIR-YIYNTAKELDLNINTYKSDVY 101

Query: 58  KIKTQDIPDHDVLLAGFP 75
           K   +     D++ A  P
Sbjct: 102 KFLDKTTLQADIIFADPP 119


>gi|317403621|gb|EFV84109.1| modification methylase [Achromobacter xylosoxidans C54]
          Length = 670

 Score = 34.0 bits (78), Expect = 7.5,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPN-TLIFGDIAKIKT- 61
          + D+F G GG     E             +   P ++  +Q N P    +  D+ ++   
Sbjct: 15 VVDIFAGGGGWSTAYEMATGQHVHIAINHN---PTALSMHQVNHPQAKHLIADVREVCPR 71

Query: 62 QDIPDHDV--LLAGFPCQPFSQA 82
          Q     +V  L     C   SQA
Sbjct: 72 QATGGAEVGWLHLSPDCTDHSQA 94


>gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
 gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
          Length = 452

 Score = 34.0 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 3   KITDLFCGIGGIRLDL-EQTFNHRNVECFFSSEINPYSVKTYQAN 46
            + DL+CGIG I L L ++       E        P +++  +AN
Sbjct: 307 TVLDLYCGIGTISLALAQKAGRVIGAEIV------PQAIEDAKAN 345


>gi|297600571|ref|NP_001049442.2| Os03g0226800 [Oryza sativa Japonica Group]
 gi|255674328|dbj|BAF11356.2| Os03g0226800 [Oryza sativa Japonica Group]
          Length = 130

 Score = 34.0 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 67 HDVLLAGFPCQPFS 80
           DV+  G PCQ  S
Sbjct: 6  VDVICGGPPCQGIS 19


>gi|207108782|ref|ZP_03242944.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 37

 Score = 34.0 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI 35
          L    LF G G     L         EC  ++EI
Sbjct: 7  LTYISLFSGAGVGCYGL----LEEGFECVATNEI 36


>gi|182437388|ref|YP_001825107.1| hypothetical protein SGR_3595 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178465904|dbj|BAG20424.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
          Length = 246

 Score = 34.0 bits (78), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKT 61
           ++ D F  IGG      + F   N        ++  +   Y     +    GD  +   
Sbjct: 17 FRVLDAFSCIGGATRGYRRAFG-PNCHVTG---VDIQAQPDY---CGDVFHQGDAIEYIR 69

Query: 62 QDIPDHDVLLAGFPCQP 78
                D +    PCQ 
Sbjct: 70 AHGHKFDFIHVSPPCQG 86


>gi|294155814|ref|YP_003560198.1| bifunctional methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600378|gb|ADE19874.1| bifunctional methyltransferase [Mycoplasma crocodyli MP145]
          Length = 241

 Score = 34.0 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK-----TYQANFPNTLIFGDI- 56
           K+ DL CG G I + L+  FN++N++    S+I+  +++     T + N    +I  D+ 
Sbjct: 77  KVLDLCCGSGFIGIALK--FNNKNLQVTL-SDIDDNAIEQSKINTLENNVKVKIIKSDLF 133

Query: 57  AKIKTQDIPDHDVLLAGFP 75
             I        D +++  P
Sbjct: 134 ENIDE----KFDCIISNPP 148


>gi|284163497|ref|YP_003401776.1| hypothetical protein Htur_0202 [Haloterrigena turkmenica DSM 5511]
 gi|284013152|gb|ADB59103.1| protein of unknown function Met10 [Haloterrigena turkmenica DSM
           5511]
          Length = 416

 Score = 34.0 bits (78), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           ++ D+F GIG   L + +           ++EINP + +    N
Sbjct: 242 RVFDMFAGIGYFTLPMARAGAR-----VTATEINPTAFRYLLEN 280


>gi|169618070|ref|XP_001802449.1| hypothetical protein SNOG_12223 [Phaeosphaeria nodorum SN15]
 gi|111059515|gb|EAT80635.1| hypothetical protein SNOG_12223 [Phaeosphaeria nodorum SN15]
          Length = 242

 Score = 34.0 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I D F G+GG  + L ++      E  F+ E +  ++K  + N
Sbjct: 76  IVDAFAGVGGNAIALARSGR---WERVFAIEKDEKTMKCAKHN 115


>gi|300870865|ref|YP_003785736.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
 gi|300688564|gb|ADK31235.1| yhhF N6 adenine specific methylase [Brachyspira pilosicoli 95/1000]
          Length = 182

 Score = 34.0 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 11/80 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGD--IAKIK 60
              DL  G G   +  E     R  +     EI+  +VKT   N  N        I ++ 
Sbjct: 41  TFLDLCAGSG--AVGFEAL--SRGAKFAAFIEIDREAVKTIFTNAKNIFEENQYKIKRVS 96

Query: 61  TQDIPD-----HDVLLAGFP 75
             D         D++    P
Sbjct: 97  ADDYVKRTNDTFDIIFFDPP 116


>gi|114771218|ref|ZP_01448638.1| short chain dehydrogenase [alpha proteobacterium HTCC2255]
 gi|114548143|gb|EAU51030.1| short chain dehydrogenase [alpha proteobacterium HTCC2255]
          Length = 254

 Score = 34.0 bits (78), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 9  CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTL 51
           G  GI L + + +     +     +I+P +++T++  +PN+L
Sbjct: 10 AGAAGIGLVIAKNYLAEGAK-VAICDIDPNAIQTFKKKYPNSL 51


>gi|15791245|ref|NP_281069.1| hypothetical protein VNG2475C [Halobacterium sp. NRC-1]
 gi|169237001|ref|YP_001690201.1| hypothetical protein OE4468F [Halobacterium salinarum R1]
 gi|10581873|gb|AAG20549.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167728067|emb|CAP14855.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 346

 Score = 34.0 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAK 58
           ++ D+F G+G   L + +           + E NP + +    N        D+A+
Sbjct: 189 RVLDMFAGVGYFALPMARAGA-----TVTAVEKNPTAFRFLAEN----AQLNDVAE 235


>gi|300022354|ref|YP_003754965.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524175|gb|ADJ22644.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 431

 Score = 33.6 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN-----PYSVKTYQANFPNTLIF--GDI 56
           + DL  G GG  L L     +      ++ + +     P   +  +AN  N  +   GD 
Sbjct: 234 VLDLCAGAGGKTLALAALMQNTG--QLYAYDADRNQLKPIFDRIKRANVRNVQVLRAGDE 291

Query: 57  AKIKTQDIPDHDVLLAGFPC 76
             +     P  DV+LA  PC
Sbjct: 292 TALAALG-PRFDVVLADAPC 310


>gi|323457292|gb|EGB13158.1| hypothetical protein AURANDRAFT_60512 [Aureococcus anophagefferens]
          Length = 1176

 Score = 33.6 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 50  TLIFGDIAKIKTQDIP-DHDVLLAGFPCQPFSQA 82
             + G++ ++   D+P D DVL +  PCQ  S+A
Sbjct: 916 VPVEGNVCRLTAADVPADVDVLSSTGPCQDLSRA 949


>gi|330934993|ref|XP_003304787.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1]
 gi|311318443|gb|EFQ87106.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1]
          Length = 240

 Score = 33.6 bits (77), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQAN 46
           I D F G+GG  + L ++      E  F+ E +P ++   + N
Sbjct: 75  IIDAFAGVGGNSIALARSGR---WERVFAIEKDPKTLMCAKHN 114


>gi|189485569|ref|YP_001956510.1| putative N6-adenine-specific methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287528|dbj|BAG14049.1| putative N6-adenine-specific methylase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 200

 Score = 33.6 bits (77), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQD 63
             DLF G G   + +E     R  +    +E++  S+   + N  N L F D AKI   D
Sbjct: 49  FIDLFAGAG--SVGIEAL--SRGAKKVVFAELSDISLSLIKRN-VNMLGFNDKAKIVKCD 103

Query: 64  I--------PDHDVLLAGFP 75
           I          +D++  G P
Sbjct: 104 IIKDFAVLQDKYDIIFMGPP 123


>gi|124485745|ref|YP_001030361.1| hypothetical protein Mlab_0923 [Methanocorpusculum labreanum Z]
 gi|124363286|gb|ABN07094.1| protein of unknown function Met10 [Methanocorpusculum labreanum Z]
          Length = 289

 Score = 33.6 bits (77), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFG 54
           +I D+F GIG   L       +       + EINP S    + N     + G
Sbjct: 152 RIADMFAGIGYFTLSAALAGGN-----VHAVEINPVSFAYLEKNIEANDLAG 198


>gi|91792550|ref|YP_562201.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           denitrificans OS217]
 gi|123166314|sp|Q12PZ8|RUMA_SHEDO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91714552|gb|ABE54478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           denitrificans OS217]
          Length = 468

 Score = 33.6 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHR-NVECFF 31
           ++ DLFCG+G   L L     +   +E   
Sbjct: 320 RVLDLFCGVGNFSLALANRGQNLDGLEVIG 349


>gi|68655480|emb|CAJ01710.1| putative cytosine-5 DNA methyltransferase [Hordeum vulgare subsp.
          vulgare]
          Length = 251

 Score = 33.6 bits (77), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 11/53 (20%)

Query: 28 ECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFS 80
          +C  +SE    + K  + N  N  + G++  I             G PCQ FS
Sbjct: 35 DCVSTSEAAEQAAKLAEENIKNLPVPGEVEFIN-----------GGPPCQGFS 76


>gi|45358648|ref|NP_988205.1| hypothetical protein MMP1085 [Methanococcus maripaludis S2]
 gi|45047514|emb|CAF30641.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 224

 Score = 33.6 bits (77), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 34  EINPYSVKTYQANFPNTLIFGDI--AKIKTQDIP-DHDVLLAGFP 75
           +I+  ++KT + N  N + +GDI   K     I    D+++  FP
Sbjct: 65  DISKDAIKTLKENGINNIFYGDIVKNKYDKHIISQKFDIII--FP 107


>gi|294055588|ref|YP_003549246.1| ribosomal L11 methyltransferase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614921|gb|ADE55076.1| ribosomal L11 methyltransferase [Coraliomargarita akajimensis DSM
           45221]
          Length = 299

 Score = 33.6 bits (77), Expect = 8.9,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 5   TDLF-CGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKT 42
            DLF  G G   L L         +  ++ + +P +++ 
Sbjct: 155 IDLFDAGCGSGILALSAAV--LGFKNLYAFDFDPEAIRV 191


>gi|228470077|ref|ZP_04054986.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
 gi|228308215|gb|EEK17070.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
          Length = 186

 Score = 33.6 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 2  LKITDLFCGIGGIRLDL 18
          +++ DLF GIG I L+ 
Sbjct: 45 MRVLDLFAGIGSISLEF 61


>gi|254458892|ref|ZP_05072316.1| hypothetical protein CBGD1_2030 [Campylobacterales bacterium GD 1]
 gi|207084658|gb|EDZ61946.1| hypothetical protein CBGD1_2030 [Campylobacterales bacterium GD 1]
          Length = 218

 Score = 33.6 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 13  GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDIPDH---DV 69
           GI   + + +    VE   + +I+  +      N  N     DI      DIP++   D+
Sbjct: 45  GISGGMTKYYLENGVEVIGA-DIDKNA-----KNQCNVFFHQDIKN---SDIPENVKPDL 95

Query: 70  LLAGFP 75
           ++   P
Sbjct: 96  IIMNPP 101


>gi|150402156|ref|YP_001329450.1| RNA methyltransferase-like protein [Methanococcus maripaludis C7]
 gi|150033186|gb|ABR65299.1| RNA methyltransferase related protein [Methanococcus maripaludis
           C7]
          Length = 295

 Score = 33.6 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVK----TYQANFPNTLIFGDIAKI 59
           + D FCG G   L L      +  +    S+INP+++K      + NF   +    I  I
Sbjct: 200 VIDGFCGSG--TLGL--AALKKGAKKVIFSDINPHALKDVIYNLKLNFSKEVFER-IEII 254

Query: 60  KTQDI 64
            +  +
Sbjct: 255 NSDFL 259


>gi|169544173|ref|YP_001692948.1| methylase [Yersinia enterocolitica]
 gi|168218357|emb|CAP20100.1| methylase [Yersinia enterocolitica]
          Length = 481

 Score = 33.6 bits (77), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 2   LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEIN---PYSVKTYQAN---FPNT--LIF 53
           + + +LF G G +       F    ++   S  +     Y   + + N   F     +I 
Sbjct: 142 MNVCELFYGYGVLARSAHDGFKSNGIKLKNSVIVERERKYIDASIEMNPDMFDAESIIIE 201

Query: 54  GDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
             I  +  ++    D+L AG PC   S++G
Sbjct: 202 SAIQDVDIKNKMKVDLLFAGIPCTGASKSG 231


>gi|150399068|ref|YP_001322835.1| RNA methyltransferase-like protein [Methanococcus vannielii SB]
 gi|150011771|gb|ABR54223.1| RNA methyltransferase related protein [Methanococcus vannielii SB]
          Length = 293

 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 4   ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS----VKTYQANFPNTLIFGDIAKI 59
           + D FCG G   L +      +  E    S+IN  +    +   + NF + +   D  +I
Sbjct: 198 VLDGFCGSG--TLGM--AALKKGAEKVIFSDINKNALDDVIYNLKLNFGDDVF--DKVEI 251

Query: 60  KTQDIPDHDVLL 71
              D  + DV  
Sbjct: 252 IHSDFLELDVTC 263


>gi|307330098|ref|ZP_07609248.1| hypothetical protein StrviDRAFT_6933 [Streptomyces violaceusniger Tu
            4113]
 gi|306884241|gb|EFN15277.1| hypothetical protein StrviDRAFT_6933 [Streptomyces violaceusniger Tu
            4113]
          Length = 2641

 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 14/85 (16%)

Query: 5    TDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIKTQDI 64
             ++F G GG+     +       +     E N  +  T      + +I  D+  +     
Sbjct: 1858 VEIFGGPGGMSAA--RALVDPGGDWVL-IEFNRDAADT-ARAAGHFVICADVRTLD---- 1909

Query: 65   PDHDVLL------AGFPCQPFSQAG 83
            P H VL          PCQ  S AG
Sbjct: 1910 PRHPVLTRVLRFHGSPPCQTLSDAG 1934


>gi|157164811|ref|YP_001466806.1| ferredoxin, 4Fe-4S [Campylobacter concisus 13826]
 gi|157101475|gb|EAT98613.2| phage integrase [Campylobacter concisus 13826]
          Length = 288

 Score = 33.6 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 40 VKTYQANFPNTLIFGDIAKIKTQDIPDH--DVL 70
          + TY  +F N+L   DI +I   DI     D++
Sbjct: 25 IATYNKHFKNSLGLRDIREINFIDIQKFCNDLI 57


>gi|317008727|gb|ADU79307.1| adenine/cytosine DNA methyltransferase [Helicobacter pylori
          India7]
          Length = 39

 Score = 33.6 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)

Query: 2  LKITDLFCGIGGIRLDLEQTFNHRNVECFFSSEI 35
          L    LF G G     L         EC  ++EI
Sbjct: 7  LTYISLFSGAGVGCYGL----LEEGFECVATNEI 36


>gi|291548836|emb|CBL25098.1| hypothetical protein RTO_03240 [Ruminococcus torques L2-14]
          Length = 48

 Score = 33.6 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 6  DLFCGIGGIRLDLEQTFNHRNV--ECFFS 32
          DLF G+ GIRL  +Q  +   +  EC FS
Sbjct: 9  DLFVGLDGIRLGFQQAMDGLELETECVFS 37


>gi|115400383|ref|XP_001215780.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191446|gb|EAU33146.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 173

 Score = 33.6 bits (77), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 4  ITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANF-------PNTLIFGD- 55
          + D F G GG  +   ++   +     ++ E NP  +   + N          T   GD 
Sbjct: 12 LIDAFAGAGGNAIAFARSGKWKR---IYAIEKNPSVLLCAKHNAKIYGVADKITWFEGDC 68

Query: 56 --IAKIKTQDIPDHDVLLAGFP 75
            I K + +D+  + V+ A  P
Sbjct: 69 FEIIKNQLKDLAPYSVVFASPP 90


>gi|192823983|ref|YP_001994629.1| gp82 [Mycobacterium phage Jasper]
 gi|190610578|gb|ACE80097.1| gp82 [Mycobacterium phage Jasper]
          Length = 218

 Score = 33.6 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 46 NFPNTLIFGDIAKIKTQDIPDHDVLLAGFPCQPFSQAG 83
          N+P      D  +  T+   + D + A  PCQ +S  G
Sbjct: 36 NYPFEFYQADALEFLTEHGREFDAIHASPPCQHYSSLG 73


>gi|149199045|ref|ZP_01876085.1| ribosomal protein L11 methyltransferase [Lentisphaera araneosa
           HTCC2155]
 gi|149137834|gb|EDM26247.1| ribosomal protein L11 methyltransferase [Lentisphaera araneosa
           HTCC2155]
          Length = 298

 Score = 33.6 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 2   LKITDLFCGIG-GIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLIFGDIAKIK 60
           +   D   G G GI   L    +        + + +P +V   + +F       DI  + 
Sbjct: 161 MSFLD--AGCGSGI---LSLAADRLGCSPVEAFDYDPEAVDCTKRHFD------DIDALD 209

Query: 61  TQDIPDHDV 69
             D+   D+
Sbjct: 210 RIDVFQADL 218


>gi|260439323|ref|ZP_05793139.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
          2876]
 gi|292808333|gb|EFF67538.1| hypothetical protein BUTYVIB_02405 [Butyrivibrio crossotus DSM
          2876]
          Length = 422

 Score = 33.6 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 3  KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYS 39
          K+ D+FCG G   + LE   ++ +    +  +INP +
Sbjct: 62 KVADIFCGCG--TVALESKIHNYDF---WGCDINPVA 93


>gi|290559902|gb|EFD93224.1| protein of unknown function Met10 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 258

 Score = 33.6 bits (77), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 3   KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFPNTLI------FGDI 56
           K+ D+FCG+G   + + +     N     + +IN  ++   + N     I       GD 
Sbjct: 111 KVLDMFCGVGPFAIPIAKKCTEVN-----AIDINKIAINLLKKNIELNKIKNIRYYCGDS 165

Query: 57  AKIKTQDIPDHDVLLAGFP 75
            KI        D ++  FP
Sbjct: 166 KKIIKGLDEKFDRIIMNFP 184


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.216    0.865 

Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,283,171,213
Number of Sequences: 14124377
Number of extensions: 115639341
Number of successful extensions: 335013
Number of sequences better than 10.0: 4305
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 2600
Number of HSP's that attempted gapping in prelim test: 322599
Number of HSP's gapped (non-prelim): 6872
length of query: 83
length of database: 4,842,793,630
effective HSP length: 54
effective length of query: 29
effective length of database: 4,080,077,272
effective search space: 118322240888
effective search space used: 118322240888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 77 (33.6 bits)