Query gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 17:44:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780518.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3i9v_7 NADH-quinone oxidoredu 13.1 92 0.0027 14.8 1.5 15 31-45 23-37 (129) 2 >2ao7_A ADAM 10; extracellular 8.0 1.2E+02 0.0035 14.4 0.5 14 19-32 2-15 (26) 3 >1e0n_A Hypothetical protein; 7.6 1.2E+02 0.0035 14.3 0.3 11 1-11 13-23 (27) 4 >3e1s_A Exodeoxyribonuclease V 7.3 81 0.0024 15.1 -0.6 25 18-42 33-57 (149) 5 >3f7f_A Nucleoporin NUP120; nu 6.5 2.1E+02 0.0062 13.2 1.2 14 3-16 46-59 (105) 6 >3l44_A Glutamate-1-semialdehy 5.9 1.3E+02 0.0039 14.1 -0.1 12 22-33 50-61 (71) 7 >2e56_A Lymphocyte antigen 96; 4.7 1.9E+02 0.0057 13.4 0.1 31 9-39 12-45 (144) 8 >3lcz_A YCZA, inhibitor of tra 4.6 2.2E+02 0.0066 13.0 0.3 30 10-39 7-36 (53) 9 >1toc_R Ornithodorin; vitamin 4.4 3.3E+02 0.0099 12.2 1.7 22 2-23 23-44 (64) 10 >1dl0_A J-atracotoxin-HV1C; ne 4.4 2.8E+02 0.0082 12.6 0.7 10 32-41 24-33 (37) No 1 >>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_7* 3iam_7* 3ias_7* (7:) Probab=13.13 E-value=92 Score=14.84 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=8.8 Q ss_pred CHHCCCCCEEEEEEE Q ss_conf 011037531557876 Q gi|254780518|r 31 LAASRGVSFARVLVF 45 (48) Q Consensus 31 laasrgvsfarvlvf 45 (48) -|++||++|..+--| T Consensus 23 ~A~~kG~~feK~aDF 37 (129) T 3i9v_7 23 YAQAKGVRFEKEADF 37 (129) T ss_dssp HHHHTTCCEEEEEEC T ss_pred HHHHCCCCCEECCCC T ss_conf 998548762011565 No 2 >>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A {Bos taurus} (A:167-192) Probab=7.98 E-value=1.2e+02 Score=14.36 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=10.7 Q ss_pred CCCHHCCCCCCCCH Q ss_conf 36000169842101 Q gi|254780518|r 19 TGISKLSGNPCNLA 32 (48) Q Consensus 19 tgisklsgnpcnla 32 (48) .||+--.|.|||-- T Consensus 2 r~i~L~pGsPC~~f 15 (26) T 2ao7_A 2 RTITLQPGSPCNDF 15 (26) T ss_dssp CCCBCCTTCEETTT T ss_pred CCCCCCCCCCCCCC T ss_conf 75777899888899 No 3 >>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} (A:) Probab=7.56 E-value=1.2e+02 Score=14.34 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=7.1 Q ss_pred CCCCCCCEEEE Q ss_conf 90147611478 Q gi|254780518|r 1 MYYNSNTVSKL 11 (48) Q Consensus 1 myynsntvskl 11 (48) ||||...-.|| T Consensus 13 ~yynaq~qtkl 23 (27) T 1e0n_A 13 LYYNAEQKTKL 23 (27) T ss_dssp EEEETTTTEEE T ss_pred EEEEHHHHHCC T ss_conf 36606654003 No 4 >>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:1-149) Probab=7.29 E-value=81 Score=15.10 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=20.4 Q ss_pred CCCCHHCCCCCCCCHHCCCCCEEEE Q ss_conf 4360001698421011037531557 Q gi|254780518|r 18 ETGISKLSGNPCNLAASRGVSFARV 42 (48) Q Consensus 18 etgisklsgnpcnlaasrgvsfarv 42 (48) +.-+..+..||--|+.-+|++|.++ T Consensus 33 ~~a~~~i~~nPY~L~~i~gigF~~a 57 (149) T 3e1s_A 33 ADALDRLEKDLFTLTEVEGIGFLTA 57 (149) T ss_dssp -----------CGGGTSSSCCHHHH T ss_pred HHHHHHHHHCCCEEEECCCCCHHHH T ss_conf 9999999949935541589995999 No 5 >>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A (A:1-16,A:326-384,A:459-488) Probab=6.49 E-value=2.1e+02 Score=13.19 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=10.0 Q ss_pred CCCCCEEEEEEEEE Q ss_conf 14761147888862 Q gi|254780518|r 3 YNSNTVSKLSVACT 16 (48) Q Consensus 3 ynsntvsklsvact 16 (48) +.|||++||.+--- T Consensus 46 WKSgT~sKLQILNi 59 (105) T 3f7f_A 46 WKSGTASKLQILNV 59 (105) T ss_dssp EEETTEEEEEEEEE T ss_pred EECCCCCEEEEEEE T ss_conf 96598626999996 No 6 >>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, csgid, cytoplasm, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} (A:67-110,A:296-322) Probab=5.93 E-value=1.3e+02 Score=14.09 Aligned_cols=12 Identities=33% Similarity=0.680 Sum_probs=8.7 Q ss_pred HHCCCCCCCCHH Q ss_conf 001698421011 Q gi|254780518|r 22 SKLSGNPCNLAA 33 (48) Q Consensus 22 sklsgnpcnlaa 33 (48) ..|||||-..|+ T Consensus 50 ~~~~~~~~~~~~ 61 (71) T 3l44_A 50 GTXAGNPASXAS 61 (71) T ss_dssp CTTTTCHHHHHH T ss_pred CCCCCCCHHHHH T ss_conf 899987066689 No 7 >>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 2z65_C* (A:) Probab=4.71 E-value=1.9e+02 Score=13.36 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=21.3 Q ss_pred EEEEEE---EECCCCCHHCCCCCCCCHHCCCCCE Q ss_conf 478888---6244360001698421011037531 Q gi|254780518|r 9 SKLSVA---CTSETGISKLSGNPCNLAASRGVSF 39 (48) Q Consensus 9 sklsva---ctsetgisklsgnpcnlaasrgvsf 39 (48) |++.|. |-+..+..+++.+||.+...+-++| T Consensus 12 ~~~~v~~~~C~~~~~~~~v~i~Pc~~~~G~~~~i 45 (144) T 2e56_A 12 SDASISYTYCDKMQYPISINVNPCIELKGSKGLL 45 (144) T ss_dssp SSEEEEEEECSSCCSCCEEEEESCCCTTCEEEEE T ss_pred CCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEE T ss_conf 7755778627987889888626772147997899 No 8 >>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A (A:) Probab=4.59 E-value=2.2e+02 Score=13.04 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=24.5 Q ss_pred EEEEEEECCCCCHHCCCCCCCCHHCCCCCE Q ss_conf 788886244360001698421011037531 Q gi|254780518|r 10 KLSVACTSETGISKLSGNPCNLAASRGVSF 39 (48) Q Consensus 10 klsvactsetgisklsgnpcnlaasrgvsf 39 (48) .|.++|..-.|-....|.||.-....||-. T Consensus 7 dle~tcp~c~~~g~~e~~pcp~c~~kgvil 36 (53) T 3lcz_A 7 DLETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53) T ss_dssp HHEEECTTTTTSCEETTEECTTTTTSSEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 410028676675762798386345753699 No 9 >>1toc_R Ornithodorin; vitamin K, zymogen, gamma-carboxyglutamic acid, acute phase, liver, hydrolase, serine protease kunitz-like inhibitor, kringle; 3.10A {Ornithodoros moubata} (R:1-64) Probab=4.40 E-value=3.3e+02 Score=12.22 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEEEECCCCCHH Q ss_conf 0147611478888624436000 Q gi|254780518|r 2 YYNSNTVSKLSVACTSETGISK 23 (48) Q Consensus 2 yynsntvsklsvactsetgisk 23 (48) |+...+.--.|-||++|--.+| T Consensus 23 yfreg~tc~~spac~~egyas~ 44 (64) T 1toc_R 23 YFREGTTCLMSPACTSEGYASQ 44 (64) T ss_dssp EEEETTEEEEEEEETTSSBSSH T ss_pred ECCCCCCCCCCCCCCCCCCCCH T ss_conf 4366885557577888884599 No 10 >>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} (A:) Probab=4.39 E-value=2.8e+02 Score=12.62 Aligned_cols=10 Identities=60% Similarity=0.913 Sum_probs=0.0 Q ss_pred HHCCCCCEEE Q ss_conf 1103753155 Q gi|254780518|r 32 AASRGVSFAR 41 (48) Q Consensus 32 aasrgvsfar 41 (48) |.|.|||+.| T Consensus 24 aesngvsycr 33 (37) T 1dl0_A 24 AESNGVSYCR 33 (37) T ss_dssp ECTTSCEEEE T ss_pred CCCCCCCEEC T ss_conf 1348741251 Done!