Query         gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 48
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 17:44:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780518.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3i9v_7 NADH-quinone oxidoredu  13.1      92  0.0027   14.8   1.5   15   31-45     23-37  (129)
  2 >2ao7_A ADAM 10; extracellular   8.0 1.2E+02  0.0035   14.4   0.5   14   19-32      2-15  (26)
  3 >1e0n_A Hypothetical protein;    7.6 1.2E+02  0.0035   14.3   0.3   11    1-11     13-23  (27)
  4 >3e1s_A Exodeoxyribonuclease V   7.3      81  0.0024   15.1  -0.6   25   18-42     33-57  (149)
  5 >3f7f_A Nucleoporin NUP120; nu   6.5 2.1E+02  0.0062   13.2   1.2   14    3-16     46-59  (105)
  6 >3l44_A Glutamate-1-semialdehy   5.9 1.3E+02  0.0039   14.1  -0.1   12   22-33     50-61  (71)
  7 >2e56_A Lymphocyte antigen 96;   4.7 1.9E+02  0.0057   13.4   0.1   31    9-39     12-45  (144)
  8 >3lcz_A YCZA, inhibitor of tra   4.6 2.2E+02  0.0066   13.0   0.3   30   10-39      7-36  (53)
  9 >1toc_R Ornithodorin; vitamin    4.4 3.3E+02  0.0099   12.2   1.7   22    2-23     23-44  (64)
 10 >1dl0_A J-atracotoxin-HV1C; ne   4.4 2.8E+02  0.0082   12.6   0.7   10   32-41     24-33  (37)

No 1  
>>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_7* 3iam_7* 3ias_7* (7:)
Probab=13.13  E-value=92  Score=14.84  Aligned_cols=15  Identities=33%  Similarity=0.589  Sum_probs=8.8

Q ss_pred             CHHCCCCCEEEEEEE
Q ss_conf             011037531557876
Q gi|254780518|r   31 LAASRGVSFARVLVF   45 (48)
Q Consensus        31 laasrgvsfarvlvf   45 (48)
                      -|++||++|..+--|
T Consensus        23 ~A~~kG~~feK~aDF   37 (129)
T 3i9v_7           23 YAQAKGVRFEKEADF   37 (129)
T ss_dssp             HHHHTTCCEEEEEEC
T ss_pred             HHHHCCCCCEECCCC
T ss_conf             998548762011565


No 2  
>>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A {Bos taurus} (A:167-192)
Probab=7.98  E-value=1.2e+02  Score=14.36  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=10.7

Q ss_pred             CCCHHCCCCCCCCH
Q ss_conf             36000169842101
Q gi|254780518|r   19 TGISKLSGNPCNLA   32 (48)
Q Consensus        19 tgisklsgnpcnla   32 (48)
                      .||+--.|.|||--
T Consensus         2 r~i~L~pGsPC~~f   15 (26)
T 2ao7_A            2 RTITLQPGSPCNDF   15 (26)
T ss_dssp             CCCBCCTTCEETTT
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             75777899888899


No 3  
>>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=7.56  E-value=1.2e+02  Score=14.34  Aligned_cols=11  Identities=45%  Similarity=0.945  Sum_probs=7.1

Q ss_pred             CCCCCCCEEEE
Q ss_conf             90147611478
Q gi|254780518|r    1 MYYNSNTVSKL   11 (48)
Q Consensus         1 myynsntvskl   11 (48)
                      ||||...-.||
T Consensus        13 ~yynaq~qtkl   23 (27)
T 1e0n_A           13 LYYNAEQKTKL   23 (27)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEEHHHHHCC
T ss_conf             36606654003


No 4  
>>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* (A:1-149)
Probab=7.29  E-value=81  Score=15.10  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             CCCCHHCCCCCCCCHHCCCCCEEEE
Q ss_conf             4360001698421011037531557
Q gi|254780518|r   18 ETGISKLSGNPCNLAASRGVSFARV   42 (48)
Q Consensus        18 etgisklsgnpcnlaasrgvsfarv   42 (48)
                      +.-+..+..||--|+.-+|++|.++
T Consensus        33 ~~a~~~i~~nPY~L~~i~gigF~~a   57 (149)
T 3e1s_A           33 ADALDRLEKDLFTLTEVEGIGFLTA   57 (149)
T ss_dssp             -----------CGGGTSSSCCHHHH
T ss_pred             HHHHHHHHHCCCEEEECCCCCHHHH
T ss_conf             9999999949935541589995999


No 5  
>>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A (A:1-16,A:326-384,A:459-488)
Probab=6.49  E-value=2.1e+02  Score=13.19  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=10.0

Q ss_pred             CCCCCEEEEEEEEE
Q ss_conf             14761147888862
Q gi|254780518|r    3 YNSNTVSKLSVACT   16 (48)
Q Consensus         3 ynsntvsklsvact   16 (48)
                      +.|||++||.+---
T Consensus        46 WKSgT~sKLQILNi   59 (105)
T 3f7f_A           46 WKSGTASKLQILNV   59 (105)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EECCCCCEEEEEEE
T ss_conf             96598626999996


No 6  
>>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, csgid, cytoplasm, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} (A:67-110,A:296-322)
Probab=5.93  E-value=1.3e+02  Score=14.09  Aligned_cols=12  Identities=33%  Similarity=0.680  Sum_probs=8.7

Q ss_pred             HHCCCCCCCCHH
Q ss_conf             001698421011
Q gi|254780518|r   22 SKLSGNPCNLAA   33 (48)
Q Consensus        22 sklsgnpcnlaa   33 (48)
                      ..|||||-..|+
T Consensus        50 ~~~~~~~~~~~~   61 (71)
T 3l44_A           50 GTXAGNPASXAS   61 (71)
T ss_dssp             CTTTTCHHHHHH
T ss_pred             CCCCCCCHHHHH
T ss_conf             899987066689


No 7  
>>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 2z65_C* (A:)
Probab=4.71  E-value=1.9e+02  Score=13.36  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             EEEEEE---EECCCCCHHCCCCCCCCHHCCCCCE
Q ss_conf             478888---6244360001698421011037531
Q gi|254780518|r    9 SKLSVA---CTSETGISKLSGNPCNLAASRGVSF   39 (48)
Q Consensus         9 sklsva---ctsetgisklsgnpcnlaasrgvsf   39 (48)
                      |++.|.   |-+..+..+++.+||.+...+-++|
T Consensus        12 ~~~~v~~~~C~~~~~~~~v~i~Pc~~~~G~~~~i   45 (144)
T 2e56_A           12 SDASISYTYCDKMQYPISINVNPCIELKGSKGLL   45 (144)
T ss_dssp             SSEEEEEEECSSCCSCCEEEEESCCCTTCEEEEE
T ss_pred             CCCEEEEECCCCCCCCCEEECCCCCCCCCCCEEE
T ss_conf             7755778627987889888626772147997899


No 8  
>>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) sequence RTPA; anti-trap, tryptophan RNA-binding attenuation protein; 2.06A {Bacillus licheniformis} PDB: 3ld0_A (A:)
Probab=4.59  E-value=2.2e+02  Score=13.04  Aligned_cols=30  Identities=23%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             EEEEEEECCCCCHHCCCCCCCCHHCCCCCE
Q ss_conf             788886244360001698421011037531
Q gi|254780518|r   10 KLSVACTSETGISKLSGNPCNLAASRGVSF   39 (48)
Q Consensus        10 klsvactsetgisklsgnpcnlaasrgvsf   39 (48)
                      .|.++|..-.|-....|.||.-....||-.
T Consensus         7 dle~tcp~c~~~g~~e~~pcp~c~~kgvil   36 (53)
T 3lcz_A            7 DLETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             HHEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             410028676675762798386345753699


No 9  
>>1toc_R Ornithodorin; vitamin K, zymogen, gamma-carboxyglutamic acid, acute phase, liver, hydrolase, serine protease kunitz-like inhibitor, kringle; 3.10A {Ornithodoros moubata} (R:1-64)
Probab=4.40  E-value=3.3e+02  Score=12.22  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEEEECCCCCHH
Q ss_conf             0147611478888624436000
Q gi|254780518|r    2 YYNSNTVSKLSVACTSETGISK   23 (48)
Q Consensus         2 yynsntvsklsvactsetgisk   23 (48)
                      |+...+.--.|-||++|--.+|
T Consensus        23 yfreg~tc~~spac~~egyas~   44 (64)
T 1toc_R           23 YFREGTTCLMSPACTSEGYASQ   44 (64)
T ss_dssp             EEEETTEEEEEEEETTSSBSSH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCH
T ss_conf             4366885557577888884599


No 10 
>>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} (A:)
Probab=4.39  E-value=2.8e+02  Score=12.62  Aligned_cols=10  Identities=60%  Similarity=0.913  Sum_probs=0.0

Q ss_pred             HHCCCCCEEE
Q ss_conf             1103753155
Q gi|254780518|r   32 AASRGVSFAR   41 (48)
Q Consensus        32 aasrgvsfar   41 (48)
                      |.|.|||+.|
T Consensus        24 aesngvsycr   33 (37)
T 1dl0_A           24 AESNGVSYCR   33 (37)
T ss_dssp             ECTTSCEEEE
T ss_pred             CCCCCCCEEC
T ss_conf             1348741251


Done!