Query         gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 48
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 09:54:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780518.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1jr7a_ b.82.2.3 (A:) Gab prot  13.5      18  0.0013   16.3  -0.1   27   19-46    102-128 (311)
  2 d2fug71 d.82.2.2 (7:3-129) NAD   8.1      63  0.0046   13.8   1.1   13   32-44     22-34  (127)
  3 d1e0na_ b.72.1.1 (A:) Hypothet   7.0      53  0.0039   14.1   0.3   11    1-11     13-23  (27)
  4 d1tocr1 g.8.1.2 (R:1A-56) Orni   5.6 1.1E+02   0.008   12.7   1.7   22    2-23     23-44  (57)
  5 d1dl0a_ g.3.6.2 (A:) J-atracot   4.4 1.1E+02  0.0082   12.6   0.7   12   31-42     23-34  (37)
  6 d1fu3a_ g.3.6.1 (A:) Conotoxin   3.8 1.3E+02  0.0095   12.3   0.6   12   23-34      3-14  (27)
  7 d1zhva1 d.58.18.8 (A:2-61) Hyp   2.5 2.2E+02   0.016   11.3   1.1   18    2-19     34-51  (60)
  8 d3beda1 c.54.1.1 (A:1-132) PTS   2.2 1.6E+02   0.012   11.9  -0.4   12   24-35     68-79  (132)
  9 d1o6wa1 b.72.1.1 (A:1-29) Spli   2.2 2.1E+02   0.015   11.4   0.2    6    2-7      16-21  (29)
 10 d1p2za2 b.121.2.2 (A:651-962)    2.1 2.5E+02   0.018   11.0   0.7   13   30-42     36-48  (312)

No 1  
>d1jr7a_ b.82.2.3 (A:) Gab protein (hypothetical protein YgaT) {Escherichia coli [TaxId: 562]}
Probab=13.50  E-value=18  Score=16.35  Aligned_cols=27  Identities=33%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CCCHHCCCCCCCCHHCCCCCEEEEEEEE
Q ss_conf             3600016984210110375315578764
Q gi|254780518|r   19 TGISKLSGNPCNLAASRGVSFARVLVFL   46 (48)
Q Consensus        19 tgisklsgnpcnlaasrgvsfarvlvfl   46 (48)
                      |+|+.|-|+| |..+..|--+||..|--
T Consensus       102 t~~~~~~g~p-n~d~m~g~~~~~f~vk~  128 (311)
T d1jr7a_         102 TAVAHLIGRS-NFDAMSGQYYARFVVKN  128 (311)
T ss_dssp             HHHHHHHEEE-CCBTTTTBSSEEEEECC
T ss_pred             HHHHHCCCCC-CCCCCCCCCCEEEEEEC
T ss_conf             5420013677-41101355423788522


No 2  
>d2fug71 d.82.2.2 (7:3-129) NADH-quinone oxidoreductase subunit 15, Nqo15 {Thermus thermophilus [TaxId: 274]}
Probab=8.06  E-value=63  Score=13.77  Aligned_cols=13  Identities=31%  Similarity=0.501  Sum_probs=5.7

Q ss_pred             HHCCCCCEEEEEE
Q ss_conf             1103753155787
Q gi|254780518|r   32 AASRGVSFARVLV   44 (48)
Q Consensus        32 aasrgvsfarvlv   44 (48)
                      |+.|||+|..+--
T Consensus        22 A~~rGv~feKeaD   34 (127)
T d2fug71          22 AQAKGVRFEKEAD   34 (127)
T ss_dssp             HHHHTCEEEEEEE
T ss_pred             HHHCCCCCEECCC
T ss_conf             9854876201156


No 3  
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.96  E-value=53  Score=14.12  Aligned_cols=11  Identities=45%  Similarity=0.945  Sum_probs=6.8

Q ss_pred             CCCCCCCEEEE
Q ss_conf             90147611478
Q gi|254780518|r    1 MYYNSNTVSKL   11 (48)
Q Consensus         1 myynsntvskl   11 (48)
                      ||||...-.|+
T Consensus        13 myynaq~q~k~   23 (27)
T d1e0na_          13 LYYNAEQKTKL   23 (27)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEEHHHHHCC
T ss_conf             26616554103


No 4  
>d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=5.64  E-value=1.1e+02  Score=12.66  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=15.4

Q ss_pred             CCCCCCEEEEEEEEECCCCCHH
Q ss_conf             0147611478888624436000
Q gi|254780518|r    2 YYNSNTVSKLSVACTSETGISK   23 (48)
Q Consensus         2 yynsntvsklsvactsetgisk   23 (48)
                      |+...+.--.|-||++|--.+|
T Consensus        23 yfreg~tc~~spac~~egyas~   44 (57)
T d1tocr1          23 YFREGTTCLMSPACTSEGYASQ   44 (57)
T ss_dssp             EEEETTEEEEEEEETTSSBSSH
T ss_pred             HHHCCCEEECCCCCCCCCCCCH
T ss_conf             8755874534878688773038


No 5  
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.39  E-value=1.1e+02  Score=12.62  Aligned_cols=12  Identities=50%  Similarity=0.656  Sum_probs=9.2

Q ss_pred             CHHCCCCCEEEE
Q ss_conf             011037531557
Q gi|254780518|r   31 LAASRGVSFARV   42 (48)
Q Consensus        31 laasrgvsfarv   42 (48)
                      -|.|.|||+.|-
T Consensus        23 kaesngvsycrk   34 (37)
T d1dl0a_          23 KAESNGVSYCRK   34 (37)
T ss_dssp             EECTTSCEEEEE
T ss_pred             ECCCCCCCEECC
T ss_conf             413487412515


No 6  
>d1fu3a_ g.3.6.1 (A:) Conotoxin {Conus textile, Tx VIa [TaxId: 6494]}
Probab=3.81  E-value=1.3e+02  Score=12.32  Aligned_cols=12  Identities=50%  Similarity=0.747  Sum_probs=8.6

Q ss_pred             HCCCCCCCCHHC
Q ss_conf             016984210110
Q gi|254780518|r   23 KLSGNPCNLAAS   34 (48)
Q Consensus        23 klsgnpcnlaas   34 (48)
                      |-||.-||+-..
T Consensus         3 kqsgemcn~ldq   14 (27)
T d1fu3a_           3 KQSGEMCNLLDQ   14 (27)
T ss_dssp             BCTTSBCCSSSC
T ss_pred             CCCCHHHHHHHC
T ss_conf             110134432102


No 7  
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.54  E-value=2.2e+02  Score=11.29  Aligned_cols=18  Identities=22%  Similarity=0.327  Sum_probs=10.5

Q ss_pred             CCCCCCEEEEEEEEECCC
Q ss_conf             014761147888862443
Q gi|254780518|r    2 YYNSNTVSKLSVACTSET   19 (48)
Q Consensus         2 yynsntvsklsvactset   19 (48)
                      |.-+.|-..||+-|.++-
T Consensus        34 ~sItrT~dELSvVC~~~~   51 (60)
T d1zhva1          34 VSITRTDDELSIVCLIDR   51 (60)
T ss_dssp             CEEEECSSCEEEEEEGGG
T ss_pred             EEEEECCCCEEEEECCCC
T ss_conf             999844880689987654


No 8  
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=2.22  E-value=1.6e+02  Score=11.90  Aligned_cols=12  Identities=42%  Similarity=0.828  Sum_probs=8.1

Q ss_pred             CCCCCCCCHHCC
Q ss_conf             169842101103
Q gi|254780518|r   24 LSGNPCNLAASR   35 (48)
Q Consensus        24 lsgnpcnlaasr   35 (48)
                      +.|.|||.|...
T Consensus        68 ~GGTP~N~a~~~   79 (132)
T d3beda1          68 KGGTPCNVAMMA   79 (132)
T ss_dssp             TTSHHHHHHHHH
T ss_pred             CCCCHHHHHHHH
T ss_conf             668866999999


No 9  
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.22  E-value=2.1e+02  Score=11.38  Aligned_cols=6  Identities=67%  Similarity=1.132  Sum_probs=0.0

Q ss_pred             CCCCCC
Q ss_conf             014761
Q gi|254780518|r    2 YYNSNT    7 (48)
Q Consensus         2 yynsnt    7 (48)
                      |||..|
T Consensus        16 YyN~~T   21 (29)
T d1o6wa1          16 YYNTLT   21 (29)
T ss_dssp             EEETTT
T ss_pred             EEECCC
T ss_conf             758998


No 10 
>d1p2za2 b.121.2.2 (A:651-962) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]}
Probab=2.12  E-value=2.5e+02  Score=10.99  Aligned_cols=13  Identities=54%  Similarity=0.744  Sum_probs=0.0

Q ss_pred             CCHHCCCCCEEEE
Q ss_conf             1011037531557
Q gi|254780518|r   30 NLAASRGVSFARV   42 (48)
Q Consensus        30 nlaasrgvsfarv   42 (48)
                      |-+|-||-||.|+
T Consensus        36 ~W~afRGWSFtRl   48 (312)
T d1p2za2          36 NWAAFRGWAFTRL   48 (312)
T ss_dssp             CCTTCCEEEEEEE
T ss_pred             CHHHHCCCCEEEE
T ss_conf             5064437332556


Done!