RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780518|ref|YP_003064931.1| hypothetical protein CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62] (48 letters) >gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated. Length = 665 Score = 23.9 bits (53), Expect = 8.3 Identities = 6/18 (33%), Positives = 8/18 (44%) Query: 30 NLAASRGVSFARVLVFLS 47 + S+ S AR L L Sbjct: 498 AIEKSKETSLARFLYALG 515 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.126 0.353 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 642,592 Number of extensions: 21527 Number of successful extensions: 41 Number of sequences better than 10.0: 1 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 3 Length of query: 48 Length of database: 5,994,473 Length adjustment: 21 Effective length of query: 27 Effective length of database: 5,540,705 Effective search space: 149599035 Effective search space used: 149599035 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.2 bits)