RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780518|ref|YP_003064931.1| hypothetical protein
CLIBASIA_02025 [Candidatus Liberibacter asiaticus str. psy62]
         (48 letters)



>gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
          Length = 665

 Score = 23.9 bits (53), Expect = 8.3
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 30  NLAASRGVSFARVLVFLS 47
            +  S+  S AR L  L 
Sbjct: 498 AIEKSKETSLARFLYALG 515


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 642,592
Number of extensions: 21527
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 3
Length of query: 48
Length of database: 5,994,473
Length adjustment: 21
Effective length of query: 27
Effective length of database: 5,540,705
Effective search space: 149599035
Effective search space used: 149599035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)