HHsearch alignment for GI: 254780519 and conserved domain: PRK12772
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional.
Probab=96.38 E-value=0.055 Score=29.13 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999999999999999-9998846536988999999999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 81 (88)
T Consensus 165 ~~~~~~~~~~~F~~a~~iA~Pii~~lll~dv~lGilaR~~PQmNVF~vGfPlkIlvGl~~l~i~lP~~~~~~~~~~~~~~ 244 (609)
T PRK12772 165 IMHVINVFIQYFVIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILLGLTAFVIALPLILKVLGSAFGNLP 244 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998136887999997899999999999998999999999986328
Q ss_pred HHHHH
Q ss_conf 99344
Q gi|254780519|r 82 SRIQS 86 (88)
Q Consensus 82 ~~ip~ 86 (88)
T Consensus 245 ~~~~~ 249 (609)
T PRK12772 245 DAIRG 249 (609)
T ss_pred HHHHH
T ss_conf 99999