HHsearch alignment for GI: 254780519 and conserved domain: PRK12781
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed.
Probab=100.00 E-value=5.6e-40 Score=215.40 Aligned_cols=87 Identities=55% Similarity=0.896 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
T Consensus 1 M~~~~vi~l~r~al~~~l~~s~PiL~~aL~VGl~IsifQA~TQIQE~TLsFVPKi~av~~~l~l~g~wm~~~l~~ft~~l 80 (88)
T PRK12781 1 MNERDALELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEMV 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999774999999999999999999999999998599899999999998779999999999999
Q ss_pred HHHHHHC
Q ss_conf 9993440
Q gi|254780519|r 81 LSRIQSS 87 (88)
Q Consensus 81 f~~ip~~ 87 (88)
T Consensus 81 f~~I~~g 87 (88)
T PRK12781 81 YGRIESG 87 (88)
T ss_pred HHHHCCC
T ss_conf 9861225