HHsearch alignment for GI: 254780519 and conserved domain: TIGR00328
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=92.16 E-value=0.57 Score=24.13 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9879999999999999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~llp~~~~~l~~g~~~~~~Q~ 107 (352)
T TIGR00328 68 LELESLVEIIIELIREVLLLLLPILVLLLVVGVLSNILQT 107 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1479999999999999999999999999999999988873