HHsearch alignment for GI: 254780519 and conserved domain: TIGR01400
>TIGR01400 fliR flagellar biosynthetic protein FliR; InterPro: IPR006303 These sequences represent the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=92.90 E-value=0.59 Score=24.06 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999-99988465369889999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~ 82 (88)
T Consensus 163 ~~~~~~~~~~F~~gl~~a~P~~~~lLl~nl~~G~~~R~~PQ~N~F~iG~Pl~~~~Gl~ll~~~~p~~~~~~~~~~~~~~~ 242 (248)
T TIGR01400 163 ELILKALSDMFLLGLLLALPIIAALLLINLVLGLVNRAAPQLNIFSIGFPLKILLGLILLYLILPVIASLFKKLFEELLE 242 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999879999999999999999877579999999855999999999999999999999999999999
Q ss_pred HHHHCC
Q ss_conf 934409
Q gi|254780519|r 83 RIQSSL 88 (88)
Q Consensus 83 ~ip~~i 88 (88)
T Consensus 243 ~~~~l~ 248 (248)
T TIGR01400 243 ALAELL 248 (248)
T ss_pred HHHHHC
T ss_conf 999729