HHsearch alignment for GI: 254780519 and conserved domain: TIGR01402
>TIGR01402 fliQ flagellar biosynthetic protein FliQ; InterPro: IPR006305 These sequences represent FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participate in bacterial type III protein secretion systems. ; GO: 0016021 integral to membrane, 0019861 flagellum.
Probab=100.00 E-value=4.2e-45 Score=240.37 Aligned_cols=88 Identities=43% Similarity=0.745 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
T Consensus 1 Mt~~~~l~l~~~a~~~~L~l~aP~L~~aL~VGLvIsIfQA~TqIqE~TLsF~PKii~~ll~l~l~gpWM~~~l~dF~~~~ 80 (88)
T TIGR01402 1 MTEETVLDLGREALWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAVLLALILLGPWMLQKLLDFTREI 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999989999999999999999998788576886698999999999998589999899999999
Q ss_pred HHHHHHCC
Q ss_conf 99934409
Q gi|254780519|r 81 LSRIQSSL 88 (88)
Q Consensus 81 f~~ip~~i 88 (88)
T Consensus 81 f~~i~~~~ 88 (88)
T TIGR01402 81 FERIPQVI 88 (88)
T ss_pred HHHHHCCC
T ss_conf 99830009