HHsearch alignment for GI: 254780519 and conserved domain: TIGR01403
>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family; InterPro: IPR006306 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but separate from, the flagellar biosynthetic protein FliQ.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=99.97 E-value=7e-32 Score=175.70 Aligned_cols=81 Identities=38% Similarity=0.675 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998846536988999999999999999999999999999999993
Q gi|254780519|r 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84 (88)
Q Consensus 5 ~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~~i 84 (88)
T Consensus 1 ~i~~~~~qaL~LvL~lSlPpv~vA~ivG~lvSLlQA~TQlQdQTL~F~iKLiaV~~tL~l~~~W~g~~ll~Fa~~if~~i 80 (81)
T TIGR01403 1 DIVQLTNQALLLVLILSLPPVLVAAIVGILVSLLQALTQLQDQTLPFAIKLIAVFITLMLTAGWLGAELLNFAEQIFTMI 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96789999999999999899999999999999999999988769999999999999999983079999999999998634
Q ss_pred H
Q ss_conf 4
Q gi|254780519|r 85 Q 85 (88)
Q Consensus 85 p 85 (88)
T Consensus 81 ~ 81 (81)
T TIGR01403 81 P 81 (81)
T ss_pred C
T ss_conf 9