HHsearch alignment for GI: 254780519 and conserved domain: TIGR01403

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family; InterPro: IPR006306 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but separate from, the flagellar biosynthetic protein FliQ.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=99.97  E-value=7e-32  Score=175.70  Aligned_cols=81  Identities=38%  Similarity=0.675  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999999998846536988999999999999999999999999999999993
Q gi|254780519|r    5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI   84 (88)
Q Consensus         5 ~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~~i   84 (88)
T Consensus         1 ~i~~~~~qaL~LvL~lSlPpv~vA~ivG~lvSLlQA~TQlQdQTL~F~iKLiaV~~tL~l~~~W~g~~ll~Fa~~if~~i   80 (81)
T TIGR01403         1 DIVQLTNQALLLVLILSLPPVLVAAIVGILVSLLQALTQLQDQTLPFAIKLIAVFITLMLTAGWLGAELLNFAEQIFTMI   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             96789999999999999899999999999999999999988769999999999999999983079999999999998634


Q ss_pred             H
Q ss_conf             4
Q gi|254780519|r   85 Q   85 (88)
Q Consensus        85 p   85 (88)
T Consensus        81 ~   81 (81)
T TIGR01403        81 P   81 (81)
T ss_pred             C
T ss_conf             9