Query gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 88
No_of_seqs 112 out of 591
Neff 4.8
Searched_HMMs 39220
Date Sun May 29 23:53:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780519.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01402 fliQ flagellar biosy 100.0 4.2E-45 0 240.4 13.2 88 1-88 1-88 (88)
2 PRK12781 fliQ flagellar biosyn 100.0 5.6E-40 1.4E-44 215.4 13.0 87 1-87 1-87 (88)
3 PRK05700 fliQ flagellar biosyn 100.0 1.4E-39 3.5E-44 213.5 13.5 88 1-88 1-88 (89)
4 COG1987 FliQ Flagellar biosynt 100.0 2.6E-39 6.6E-44 212.2 13.4 88 1-88 1-88 (89)
5 PRK06010 fliQ flagellar biosyn 100.0 2.4E-39 6E-44 212.3 13.1 87 1-87 1-87 (88)
6 pfam01313 Bac_export_3 Bacteri 100.0 2.6E-33 6.6E-38 182.7 10.5 76 4-79 1-76 (76)
7 TIGR01403 fliQ_rel_III type II 100.0 7E-32 1.8E-36 175.7 11.6 81 5-85 1-81 (81)
8 COG4794 EscS Type III secretor 100.0 2.1E-29 5.3E-34 163.6 12.5 87 1-87 1-87 (89)
9 PRK05701 fliR flagellar biosyn 97.3 0.0091 2.3E-07 32.9 11.7 83 4-86 166-249 (250)
10 pfam01311 Bac_export_1 Bacteri 97.1 0.016 4.1E-07 31.7 11.3 82 4-85 167-249 (249)
11 PRK12772 bifunctional flagella 96.4 0.055 1.4E-06 29.1 12.5 84 3-86 165-249 (609)
12 PRK12780 fliR flagellar biosyn 94.1 0.37 9.4E-06 25.1 11.5 78 4-81 170-248 (250)
13 COG1684 FliR Flagellar biosynt 93.7 0.42 1.1E-05 24.8 11.0 84 4-87 169-253 (258)
14 TIGR01400 fliR flagellar biosy 92.9 0.59 1.5E-05 24.1 13.0 85 4-88 163-248 (248)
15 TIGR00328 flhB flagellar biosy 92.2 0.57 1.5E-05 24.1 6.2 40 1-40 68-107 (352)
16 COG1377 FlhB Flagellar biosynt 90.9 0.88 2.3E-05 23.2 6.0 41 1-41 73-113 (363)
17 PRK05702 flhB flagellar biosyn 88.0 1.8 4.6E-05 21.7 6.2 40 2-41 74-113 (352)
18 pfam05552 TM_helix Conserved T 87.9 1.8 4.7E-05 21.6 6.4 45 39-84 2-46 (53)
19 PRK12773 flhB flagellar biosyn 75.5 6 0.00015 19.1 6.0 39 1-39 368-406 (649)
20 PRK06298 type III secretion sy 74.6 6.3 0.00016 19.0 6.1 38 3-40 69-106 (360)
21 TIGR01726 HEQRo_perm_3TM amino 63.6 11 0.00029 17.8 7.8 33 8-40 3-35 (99)
22 PRK10782 DL-methionine transpo 61.0 13 0.00032 17.5 7.5 40 4-43 3-42 (217)
23 PRK09108 type III secretion sy 60.3 13 0.00034 17.5 5.9 38 3-40 70-107 (354)
24 PRK13109 flhB flagellar biosyn 57.7 15 0.00037 17.2 5.8 38 4-41 78-115 (358)
25 PRK08156 surface presentation 53.7 17 0.00044 16.9 5.1 35 6-40 66-100 (367)
26 pfam06295 DUF1043 Protein of u 50.1 12 0.00031 17.6 2.2 13 26-38 3-15 (128)
27 COG1989 PulO Type II secretory 48.9 21 0.00053 16.5 8.3 74 3-76 177-252 (254)
28 COG4597 BatB ABC-type amino ac 48.6 21 0.00054 16.5 6.2 55 28-88 88-143 (397)
29 PRK10352 nickel transporter pe 48.1 22 0.00055 16.4 4.3 41 3-43 87-127 (314)
30 PRK11677 cytochrome d ubiquino 45.4 16 0.0004 17.1 2.2 13 26-38 7-19 (134)
31 TIGR01597 PYST-B Plasmodium yo 44.7 25 0.00063 16.1 3.6 38 8-45 219-256 (274)
32 PRK11123 arginine transporter 39.2 30 0.00078 15.7 5.5 30 11-40 8-37 (238)
33 PRK10914 dipeptide transporter 38.7 31 0.00079 15.6 4.2 51 2-52 84-136 (339)
34 COG2928 Uncharacterized conser 35.7 35 0.00089 15.4 10.7 78 9-86 5-96 (222)
35 COG3105 Uncharacterized protei 35.0 29 0.00074 15.8 2.2 13 26-38 12-24 (138)
36 pfam04367 DUF502 Protein of un 32.2 40 0.001 15.1 4.7 31 56-86 6-36 (108)
37 TIGR01404 FlhB_rel_III type II 29.8 44 0.0011 14.9 5.8 71 6-77 70-168 (346)
38 PRK09471 oppB oligopeptide tra 24.5 56 0.0014 14.4 8.5 48 4-51 84-133 (306)
39 pfam07343 DUF1475 Protein of u 23.8 58 0.0015 14.3 2.7 19 64-82 166-184 (254)
40 COG3838 VirB2 Type IV secretor 23.3 60 0.0015 14.2 5.4 44 36-80 37-80 (108)
41 PRK12468 flhB flagellar biosyn 22.9 61 0.0016 14.2 6.1 34 7-40 79-112 (383)
42 PRK12721 secretion system appa 22.1 63 0.0016 14.1 5.9 35 6-40 71-105 (349)
43 PRK05454 glucosyltransferase M 20.3 70 0.0018 13.9 5.7 47 17-63 400-472 (663)
44 TIGR01401 fliR_like_III type I 20.3 70 0.0018 13.9 12.2 82 3-84 175-257 (262)
45 pfam11190 DUF2976 Protein of u 20.2 70 0.0018 13.9 8.5 71 4-74 13-85 (87)
46 COG0601 DppB ABC-type dipeptid 20.2 70 0.0018 13.9 5.7 47 5-51 86-134 (317)
No 1
>TIGR01402 fliQ flagellar biosynthetic protein FliQ; InterPro: IPR006305 These sequences represent FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participate in bacterial type III protein secretion systems. ; GO: 0016021 integral to membrane, 0019861 flagellum.
Probab=100.00 E-value=4.2e-45 Score=240.37 Aligned_cols=88 Identities=43% Similarity=0.745 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
||+|.+++++|+|+|.++.+|+|+|++|++|||+||+|||+||||||||||+||+++++++++++||||++++.||++++
T Consensus 1 Mt~~~~l~l~~~a~~~~L~l~aP~L~~aL~VGLvIsIfQA~TqIqE~TLsF~PKii~~ll~l~l~gpWM~~~l~dF~~~~ 80 (88)
T TIGR01402 1 MTEETVLDLGREALWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAVLLALILLGPWMLQKLLDFTREI 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999989999999999999999998788576886698999999999998589999899999999
Q ss_pred HHHHHHCC
Q ss_conf 99934409
Q gi|254780519|r 81 LSRIQSSL 88 (88)
Q Consensus 81 f~~ip~~i 88 (88)
|++||+.+
T Consensus 81 f~~i~~~~ 88 (88)
T TIGR01402 81 FERIPQVI 88 (88)
T ss_pred HHHHHCCC
T ss_conf 99830009
No 2
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=100.00 E-value=5.6e-40 Score=215.40 Aligned_cols=87 Identities=55% Similarity=0.896 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
||+++++|+.||++|+++++|+|++++|++||++||+|||+||||||||||+||+++++++++++||||++++.+|++++
T Consensus 1 M~~~~vi~l~r~al~~~l~~s~PiL~~aL~VGl~IsifQA~TQIQE~TLsFVPKi~av~~~l~l~g~wm~~~l~~ft~~l 80 (88)
T PRK12781 1 MNERDALELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEMV 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999774999999999999999999999999998599899999999998779999999999999
Q ss_pred HHHHHHC
Q ss_conf 9993440
Q gi|254780519|r 81 LSRIQSS 87 (88)
Q Consensus 81 f~~ip~~ 87 (88)
|++||+.
T Consensus 81 f~~I~~g 87 (88)
T PRK12781 81 YGRIESG 87 (88)
T ss_pred HHHHCCC
T ss_conf 9861225
No 3
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=100.00 E-value=1.4e-39 Score=213.48 Aligned_cols=88 Identities=35% Similarity=0.646 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
||+++++|+.||++|+++++|+|++++|++||++||+|||+||||||||||+||+++++++++++||||++++.+|++++
T Consensus 1 M~~~~~i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~QA~TqIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i 80 (89)
T PRK05700 1 MTPESVMDLFREAMKVALMLAAPLLLVALIVGLVVSIFQAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999888999999999999999999999998998799999999999998789999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99934409
Q gi|254780519|r 81 LSRIQSSL 88 (88)
Q Consensus 81 f~~ip~~i 88 (88)
|++||+++
T Consensus 81 f~~ip~lv 88 (89)
T PRK05700 81 FTNIPTLI 88 (89)
T ss_pred HHHHHHHC
T ss_conf 99877666
No 4
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-39 Score=212.15 Aligned_cols=88 Identities=47% Similarity=0.792 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
||+++++|++|+++|+++.+|+|.+++|++||++||+|||+||||||||||+||++++++++.++||||++++.||++++
T Consensus 1 Mt~~~~l~i~~~ai~~~L~l~~P~ll~alvvGLvIsifQA~TQIqEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~i 80 (89)
T COG1987 1 MTEEDVLDIGQEAIWLVLMLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTI 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999998999999999999999999999999998599899999999997589999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99934409
Q gi|254780519|r 81 LSRIQSSL 88 (88)
Q Consensus 81 f~~ip~~i 88 (88)
|+++|+++
T Consensus 81 f~~i~~~i 88 (89)
T COG1987 81 FSNIPQII 88 (89)
T ss_pred HHHHHHHC
T ss_conf 99887661
No 5
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=100.00 E-value=2.4e-39 Score=212.32 Aligned_cols=87 Identities=55% Similarity=0.949 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
||+++++|+.||++|+++++|+|++++|++||++||+|||+||||||||||+||+++++++++++||||++++.+|++++
T Consensus 1 Mt~~~vi~l~~~al~~~l~ls~P~L~valvVGl~IslfQA~TQIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~ft~~i 80 (88)
T PRK06010 1 MNEADALDVVRDAIWTVLIASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLRI 80 (88)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98889999999999999999876999999999999999999999998998799999999999998889999999999999
Q ss_pred HHHHHHC
Q ss_conf 9993440
Q gi|254780519|r 81 LSRIQSS 87 (88)
Q Consensus 81 f~~ip~~ 87 (88)
|++||..
T Consensus 81 f~~I~gg 87 (88)
T PRK06010 81 YSRIAGG 87 (88)
T ss_pred HHHHCCC
T ss_conf 9871346
No 6
>pfam01313 Bac_export_3 Bacterial export proteins, family 3. This family includes the following members; FliQ, MopD, HrcS, Hrp, YopS and SpaQ All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.
Probab=100.00 E-value=2.6e-33 Score=182.73 Aligned_cols=76 Identities=41% Similarity=0.782 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999988465369889999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~ 79 (88)
++++|+.||++|.++++|+|++++|++||++||+|||+||||||||||+||+++++++++++||||.+++.+|+++
T Consensus 1 ~~~i~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~TqIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~ 76 (76)
T pfam01313 1 EDVIDLGRQALWLVLLLSAPLLLVALVVGLVVSLFQAATQIQEQTLSFVPKLLAVLLTLLLAGPWMLQTLLDFTRE 76 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9489999999999999998899999999999999999999989689869999999999999878999999987529
No 7
>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family; InterPro: IPR006306 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but separate from, the flagellar biosynthetic protein FliQ.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=99.97 E-value=7e-32 Score=175.70 Aligned_cols=81 Identities=38% Similarity=0.675 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998846536988999999999999999999999999999999993
Q gi|254780519|r 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84 (88)
Q Consensus 5 ~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~~i 84 (88)
++.+..+||+|.++.+|+|++++|.+||+.||++||+||+|||||+|.-|+++|++++++++||+++++.+|++++|++|
T Consensus 1 ~i~~~~~qaL~LvL~lSlPpv~vA~ivG~lvSLlQA~TQlQdQTL~F~iKLiaV~~tL~l~~~W~g~~ll~Fa~~if~~i 80 (81)
T TIGR01403 1 DIVQLTNQALLLVLILSLPPVLVAAIVGILVSLLQALTQLQDQTLPFAIKLIAVFITLMLTAGWLGAELLNFAEQIFTMI 80 (81)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96789999999999999899999999999999999999988769999999999999999983079999999999998634
Q ss_pred H
Q ss_conf 4
Q gi|254780519|r 85 Q 85 (88)
Q Consensus 85 p 85 (88)
|
T Consensus 81 ~ 81 (81)
T TIGR01403 81 P 81 (81)
T ss_pred C
T ss_conf 9
No 8
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.1e-29 Score=163.57 Aligned_cols=87 Identities=34% Similarity=0.576 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999884653698899999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
|+.+++.+..+|++|.++.+|+|+.++|.+||++||++||+||||||||+|.-|+++|++++++++||+++.+.+|++.+
T Consensus 1 m~~~~i~~~~~qaL~liLilSlPpvivAsvvGllVslvQA~TQiQdQTl~f~iKLl~V~~tl~lt~~Wlg~~ll~fa~~i 80 (89)
T COG4794 1 MDMDDIVFLTSQALWLILILSLPPVIVASVVGLLVSLVQALTQIQDQTLPFGIKLLAVSATLFLTAGWLGATLLNFAEQI 80 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96779999999999999999611999999999999999999999986788999999999999997077588999999999
Q ss_pred HHHHHHC
Q ss_conf 9993440
Q gi|254780519|r 81 LSRIQSS 87 (88)
Q Consensus 81 f~~ip~~ 87 (88)
|.++|..
T Consensus 81 ~~~~~~~ 87 (89)
T COG4794 81 FLNIPKA 87 (89)
T ss_pred HHHHHHC
T ss_conf 9986640
No 9
>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=97.27 E-value=0.0091 Score=32.94 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999-99988465369889999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~ 82 (88)
+.+.+...+.+..++.+++|.+.+.+.+-+..|+. .++-|+|=-.++|--|+..-.+.+.+..|.+.....+.+++.++
T Consensus 166 ~~~~~~~~~~f~~al~lAaPi~~~~ll~~~~lG~l~R~~PQlnvf~vg~p~ki~~gl~~l~l~l~~l~~~~~~~f~~~~~ 245 (250)
T PRK05701 166 LLLAKALSAMFLIGLQLALPIIVALLLVNLALGLLNRAAPQLNIFVIGFPLKITVGLLILALILPALLSVFENLFSEAFQ 245 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999989999999999999999970730008999977999999999999999999999999999999
Q ss_pred HHHH
Q ss_conf 9344
Q gi|254780519|r 83 RIQS 86 (88)
Q Consensus 83 ~ip~ 86 (88)
.+..
T Consensus 246 ~~~~ 249 (250)
T PRK05701 246 LLCD 249 (250)
T ss_pred HHHC
T ss_conf 9860
No 10
>pfam01311 Bac_export_1 Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.
Probab=97.05 E-value=0.016 Score=31.75 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999-99988465369889999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~ 82 (88)
+.+++...+.+..++.+++|++++.+.+-+..|+. .++-|+|=-.++|--|+..-...+.+..|.+.....+-..+.||
T Consensus 167 ~~~~~~~~~~F~~al~lAaPii~~~ll~~l~lGll~R~~PQlnvf~lg~pvki~~gl~~l~~~lp~~~~~~~~~~~~~fd 246 (249)
T pfam01311 167 KFLLKALSQLFSIALLLAAPVIILLLLIDLALGLLSRFAPQLNVFVLSFPIKSAVGLLLLALYLPYILPLFKEELSLLFD 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999971731006998966999999999999999999999999999987
Q ss_pred HHH
Q ss_conf 934
Q gi|254780519|r 83 RIQ 85 (88)
Q Consensus 83 ~ip 85 (88)
.+.
T Consensus 247 ~~~ 249 (249)
T pfam01311 247 LLS 249 (249)
T ss_pred HCC
T ss_conf 419
No 11
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=96.38 E-value=0.055 Score=29.13 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999999999999999-9998846536988999999999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 81 (88)
.+.+++...+.+..++.+++|++.+.+++-+..|+. -++-|+|=-.+.|=-|++.=+.++.++.|.+.+.+-+-+.|+=
T Consensus 165 ~~~~~~~~~~~F~~a~~iA~Pii~~lll~dv~lGilaR~~PQmNVF~vGfPlkIlvGl~~l~i~lP~~~~~~~~~~~~~~ 244 (609)
T PRK12772 165 IMHVINVFIQYFVIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILLGLTAFVIALPLILKVLGSAFGNLP 244 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998136887999997899999999999998999999999986328
Q ss_pred HHHHH
Q ss_conf 99344
Q gi|254780519|r 82 SRIQS 86 (88)
Q Consensus 82 ~~ip~ 86 (88)
|.|..
T Consensus 245 ~~~~~ 249 (609)
T PRK12772 245 DAIRG 249 (609)
T ss_pred HHHHH
T ss_conf 99999
No 12
>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=94.06 E-value=0.37 Score=25.08 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999-9998846536988999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 81 (88)
+.+++...+.+..++++++|.+.+.+++-+..|+. .++-|+|=--++|--|+..-...+.+..|-+...-.+.+.+=.
T Consensus 170 ~~~~~~~~~~F~lal~lAaPvi~~~ll~nv~lGil~R~~PQlNvf~vg~P~~i~~Gl~vL~l~~p~l~~~f~~~f~~~~ 248 (250)
T PRK12780 170 VQLVDQLSEAFTLALRIASPFIIYSVIVNLAVGLANKLTPTIPVYFISTPFVLFGGLLLLYLLSDEMLTQFSLAYAAWL 248 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999998033555899995699999999999999999999999999997
No 13
>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.75 E-value=0.42 Score=24.77 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999-9988465369889999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQ-ALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~Q-A~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~ 82 (88)
....+-.++.+..++.++.|.+...+++-++.|+.- ++-|+|=--++|--|+..-...+.+..|-+.....+.+.+.++
T Consensus 169 ~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~PQinvf~ig~Pl~i~~Gl~lL~~~lp~i~~~~~~~~~~~~~ 248 (258)
T COG1684 169 LLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLAPQLNVFFIGFPLKIAVGLLLLYLILPLIAPVFKHLFSELFE 248 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999989999999999999999842542006875531999999999999999999999999999999
Q ss_pred HHHHC
Q ss_conf 93440
Q gi|254780519|r 83 RIQSS 87 (88)
Q Consensus 83 ~ip~~ 87 (88)
.+.++
T Consensus 249 ~~~~~ 253 (258)
T COG1684 249 QLARL 253 (258)
T ss_pred HHHHH
T ss_conf 99999
No 14
>TIGR01400 fliR flagellar biosynthetic protein FliR; InterPro: IPR006303 These sequences represent the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=92.90 E-value=0.59 Score=24.06 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999-99988465369889999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~ 82 (88)
+.+.+-..+.+..++.++.|++..++++-++.|+. .+.=|+|==-.+|=-|++.-+..+.+..|-+.+...+..++.++
T Consensus 163 ~~~~~~~~~~F~~gl~~a~P~~~~lLl~nl~~G~~~R~~PQ~N~F~iG~Pl~~~~Gl~ll~~~~p~~~~~~~~~~~~~~~ 242 (248)
T TIGR01400 163 ELILKALSDMFLLGLLLALPIIAALLLINLVLGLVNRAAPQLNIFSIGFPLKILLGLILLYLILPVIASLFKKLFEELLE 242 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999879999999999999999877579999999855999999999999999999999999999999
Q ss_pred HHHHCC
Q ss_conf 934409
Q gi|254780519|r 83 RIQSSL 88 (88)
Q Consensus 83 ~ip~~i 88 (88)
.+.+++
T Consensus 243 ~~~~l~ 248 (248)
T TIGR01400 243 ALAELL 248 (248)
T ss_pred HHHHHC
T ss_conf 999729
No 15
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=92.16 E-value=0.57 Score=24.13 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9879999999999999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
.|...+.+++.+.+.-+++..+|+...++++|++.++.|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~llp~~~~~l~~g~~~~~~Q~ 107 (352)
T TIGR00328 68 LELESLVEIIIELIREVLLLLLPILVLLLVVGVLSNILQT 107 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1479999999999999999999999999999999988873
No 16
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.86 E-value=0.88 Score=23.21 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799999999999999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQAL 41 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~ 41 (88)
++...+.++....+.-++....|.++..+++|++.+++|.-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~llp~~~~~~v~gi~~~~~q~g 113 (363)
T COG1377 73 LDDESALELIKALLLEILKALLPFLLVLLVVGLLANILQVG 113 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 37225999999999999999999999999999999999847
No 17
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=88.04 E-value=1.8 Score=21.70 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8799999999999999999999999999999999999999
Q gi|254780519|r 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQAL 41 (88)
Q Consensus 2 ~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~ 41 (88)
++....++..+.++..+...+|++++.+++|++.++.|.-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~Q~G 113 (352)
T PRK05702 74 DPNDMLSLFGLLILELLLALLPILLLLVLAALLAPILQGG 113 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8689999999999999999999999999999999998527
No 18
>pfam05552 TM_helix Conserved TM helix. This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with pfam00924.
Probab=87.87 E-value=1.8 Score=21.65 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998846536988999999999999999999999999999999993
Q gi|254780519|r 39 QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRI 84 (88)
Q Consensus 39 QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if~~i 84 (88)
|.++...++=++|.||+++-.+. ++.|-|..+.+.++.++..++.
T Consensus 2 ~~~~~~l~~i~~~lP~ii~AivI-L~vG~~va~~v~~~v~k~L~~~ 46 (53)
T pfam05552 2 EPLTNMLDLILAYLPNLIAAILI-LLVGWLIAKIVRRLVTKLLEKI 46 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62889999999998999999999-9999999999999999999984
No 19
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=75.52 E-value=6 Score=19.14 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987999999999999999999999999999999999999
Q gi|254780519|r 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQ 39 (88)
Q Consensus 1 M~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~Q 39 (88)
|+.+...++..+...-.+.+..|.++++++++++.++.|
T Consensus 368 ~~~~~~~~ll~~~~~~~l~ll~PL~lv~~VaAllaNi~Q 406 (649)
T PRK12773 368 MSSESVTELLKNASTDLFTLLWPLLGITLVGAIIGNVAQ 406 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 226789999999999999999999999999999988884
No 20
>PRK06298 type III secretion system protein; Validated
Probab=74.58 E-value=6.3 Score=19.01 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
+.....+..+++...+...+|++++..++|++.++.|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lP~~~~~~~~~i~~~~~q~ 106 (360)
T PRK06298 69 PGVTLYYLKNCLMLILTASLPLLGAVAFVGVIIGFLIV 106 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47899999999999999999999999999999999864
No 21
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=63.62 E-value=11 Score=17.78 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999
Q gi|254780519|r 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 8 ~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
....++++..+.++..-+..+++.|+++++.+-
T Consensus 3 p~l~~G~~~Tl~~~~~~~~~g~~~Gl~~al~r~ 35 (99)
T TIGR01726 3 PFLLKGLLLTLLISVLSILLGLVLGLLLALLRL 35 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999999999999999987
No 22
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=60.98 E-value=13 Score=17.53 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999988
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQ 43 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQ 43 (88)
++.+.+.-+++|..+.++.-....+.++|+.+|++-+.+.
T Consensus 3 ~~~~~lll~g~~~Tl~mt~~s~~~~~iiglplGi~l~~~~ 42 (217)
T PRK10782 3 EAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTR 42 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7899999999999999999999999999999999999732
No 23
>PRK09108 type III secretion system protein HrcU; Validated
Probab=60.27 E-value=13 Score=17.46 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
.........+.....+....|.+++.+++|++.++.|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~i~~~~~Q~ 107 (354)
T PRK09108 70 LQALLAALHHIGAQALLLMLPFVAAALVAGILGQAPQT 107 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999999999999999999998403
No 24
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=57.68 E-value=15 Score=17.22 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQAL 41 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~ 41 (88)
++...+..........+..|++++..++|++.+++|.-
T Consensus 78 ~~~~~~~~~~~~~~~~~l~P~~~~~~v~~i~~~~~Q~G 115 (358)
T PRK13109 78 ADAILLLSRVGLAAGRFLLPILLVLAVAGLAASLLQNL 115 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65999999999999999999999999999999986014
No 25
>PRK08156 surface presentation of antigens protein SpaS; Validated
Probab=53.68 E-value=17 Score=16.88 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999
Q gi|254780519|r 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 6 vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
.-++..+.++..+.+.+|.+++.+++|++.++.|.
T Consensus 66 ~~~~~~~~~~~~~~~~~P~~~~~~l~~i~a~l~Q~ 100 (367)
T PRK08156 66 MGDYFFAVAILFLKILIPFLLLCLLAGALPSLLQT 100 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999721
No 26
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=50.07 E-value=12 Score=17.65 Aligned_cols=13 Identities=15% Similarity=0.687 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780519|r 26 FSAMFLGILIAFL 38 (88)
Q Consensus 26 l~alvvGl~Isi~ 38 (88)
+++++||++||.+
T Consensus 3 li~lvvG~iiG~~ 15 (128)
T pfam06295 3 IIGLIVGLIIGLI 15 (128)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 27
>COG1989 PulO Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=48.94 E-value=21 Score=16.48 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999999999999999999884--65369889999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQI--QEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQI--QEqTLsFvPKliav~~~l~~~~pwm~~~l~~f 76 (88)
..|+.....-..|.....-.-.+..+...|...+..+-.... -+++++|+|=+.+-..+-.+.+......+..+
T Consensus 177 ~Gd~~~~~~~g~~~g~~~~~~~~~~as~~g~~~~~~~~~~~~~~~~~~lPF~P~l~~g~~i~~~~g~~~~~~~~~~ 252 (254)
T COG1989 177 AGDFKLLAALGAWLGFKGLPLLLLLASVLGLLYALILLLKKGVWVTPALPFGPFLALGFVIALLLGDLLIYLLDKL 252 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8749999899999976343999999986617999999974123100588857999999999999988899999998
No 28
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=48.64 E-value=21 Score=16.45 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999988465369-889999999999999999999999999999999934409
Q gi|254780519|r 28 AMFLGILIAFLQALTQIQEVTL-TFVPKIIAVFITLIISAPFIGGQISSFVTLVLSRIQSSL 88 (88)
Q Consensus 28 alvvGl~Isi~QA~TQIQEqTL-sFvPKliav~~~l~~~~pwm~~~l~~f~~~if~~ip~~i 88 (88)
+++||++=.+.-|+.-|--.|. .|. .+.--++-+|..+++..--.|+|.+||.++
T Consensus 88 a~~VGllNTl~Va~~gIi~atIiGfl------iGIaRLS~NWLi~kl~~vYvEiFRNiPpLL 143 (397)
T COG4597 88 AFIVGLLNTLLVAALGIITATIIGFL------IGIARLSDNWLIRKLSTVYVEIFRNIPPLL 143 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 88998898999999999999999999------877772313899999899999982685799
No 29
>PRK10352 nickel transporter permease NikB; Provisional
Probab=48.06 E-value=22 Score=16.41 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999999999999999999999988
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQ 43 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQ 43 (88)
...+.+...+.+...+.++.+.+..+.++|+..|++-|.-+
T Consensus 87 ~~pV~~~I~~~lp~Tl~L~~~a~~l~~~igi~lGi~aa~~~ 127 (314)
T PRK10352 87 QRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIWAARHR 127 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88608988876378899999999999999859999987207
No 30
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=45.42 E-value=16 Score=17.06 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780519|r 26 FSAMFLGILIAFL 38 (88)
Q Consensus 26 l~alvvGl~Isi~ 38 (88)
+++++||++||.+
T Consensus 7 li~lvvGiiIG~~ 19 (134)
T PRK11677 7 LIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 31
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B; InterPro: IPR006484 The sequences in this group represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism. .
Probab=44.68 E-value=25 Score=16.13 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999998846
Q gi|254780519|r 8 EIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQ 45 (88)
Q Consensus 8 ~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQ 45 (88)
.+.--.+..+++++||+-++++++.++||+--..-+-|
T Consensus 219 ~~~~~~~v~s~lv~G~vyl~~~ii~~~iSi~~~i~~~~ 256 (274)
T TIGR01597 219 LVVLILLVLSLLVSGLVYLLLVIISVLISIEILIKSFK 256 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999821289999999999999999999999
No 32
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=39.19 E-value=30 Score=15.67 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999
Q gi|254780519|r 11 RAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 11 ~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
-+++++.+.++.-.++.+++.|++.++.+.
T Consensus 8 l~G~~~Tl~l~~~a~~~g~~lG~~la~~r~ 37 (238)
T PRK11123 8 ASAAGMTVGLAVCALIVGLALAMFFAVWES 37 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999998
No 33
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=38.73 E-value=31 Score=15.64 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 879999999999999999999999999999999999999988--465369889
Q gi|254780519|r 2 NEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQ--IQEVTLTFV 52 (88)
Q Consensus 2 ~~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQ--IQEqTLsFv 52 (88)
+...+.+...+.+...+.++...+..+.++|+..|++-|.-+ .-|..++++
T Consensus 84 ~~~pV~~~i~~~lp~Tl~L~~~a~il~~~igi~lGi~aa~~~~~~~D~~~~~~ 136 (339)
T PRK10914 84 SRIPVWEEFVPRFKATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGL 136 (339)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 68836999987272589999999999999999999999985275111367888
No 34
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=35.67 E-value=35 Score=15.38 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999-----8846536---------98899999999999999999999999
Q gi|254780519|r 9 IARAAMWTILSSSAPVLFSAMFLGILIAFLQAL-----TQIQEVT---------LTFVPKIIAVFITLIISAPFIGGQIS 74 (88)
Q Consensus 9 l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~-----TQIQEqT---------LsFvPKliav~~~l~~~~pwm~~~l~ 74 (88)
-.+.-+.+.+.+.+|..+.--++..++|..-.- +.-.++- |.++--++.+.+.=++.-.-.++.+.
T Consensus 5 ~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~l~ 84 (222)
T COG2928 5 RLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRSLL 84 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999998899999999999999999999987644304212122214760347889999999999999999987554899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999344
Q gi|254780519|r 75 SFVTLVLSRIQS 86 (88)
Q Consensus 75 ~f~~~if~~ip~ 86 (88)
++.+.+++|||-
T Consensus 85 ~~~d~~L~RiPl 96 (222)
T COG2928 85 SLGDSLLRRIPL 96 (222)
T ss_pred HHHHHHHCCCCC
T ss_conf 999999700752
No 35
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.96 E-value=29 Score=15.78 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780519|r 26 FSAMFLGILIAFL 38 (88)
Q Consensus 26 l~alvvGl~Isi~ 38 (88)
+++++||++||.+
T Consensus 12 ~igLvvGi~IG~l 24 (138)
T COG3105 12 LIGLVVGIIIGAL 24 (138)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 36
>pfam04367 DUF502 Protein of unknown function (DUF502). Predicted to be an integral membrane protein.
Probab=32.23 E-value=40 Score=15.08 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999344
Q gi|254780519|r 56 IAVFITLIISAPFIGGQISSFVTLVLSRIQS 86 (88)
Q Consensus 56 iav~~~l~~~~pwm~~~l~~f~~~if~~ip~ 86 (88)
+.++++=++...|.++.+.++.++++.+||-
T Consensus 6 ~~i~~vG~l~~~~~g~~l~~~~e~~l~riP~ 36 (108)
T pfam04367 6 LLIFLVGLLARNFIGRWLLSLGERLLNRIPL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999959899999999999997861
No 37
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family; InterPro: IPR006307 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, the flagellar biosynthetic protein FlhB (IPR006136 from INTERPRO). This model may not identify all type III secretion system FlhB homologs. ; GO: 0006810 transport, 0016021 integral to membrane.
Probab=29.80 E-value=44 Score=14.86 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHH
Q ss_conf 99999999-999999999999999999999999999---------------------------98846536988999999
Q gi|254780519|r 6 VLEIARAA-MWTILSSSAPVLFSAMFLGILIAFLQA---------------------------LTQIQEVTLTFVPKIIA 57 (88)
Q Consensus 6 vi~l~~~a-l~~~l~ls~P~Ll~alvvGl~Isi~QA---------------------------~TQIQEqTLsFvPKlia 57 (88)
+-.+.... +..++..++|.+++++++++..+.+|. +=++=|---|. -|+++
T Consensus 70 L~~~~~~~~l~~~~~~~l~~~~~v~~~~~~~~~~Q~Gf~lA~ea~Kpd~~klNP~~glK~IFS~rs~~El~Ks~-lK~~~ 148 (346)
T TIGR01404 70 LKQVLSGFLLQLILTVLLPLLAIVLLATVLSGLLQVGFVLATEALKPDLSKLNPISGLKRIFSLRSLIELLKSI-LKVVA 148 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999999999999999999999999998887330011014366810138353246776776499999999-99999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780519|r 58 VFITLIISAPFIGGQISSFV 77 (88)
Q Consensus 58 v~~~l~~~~pwm~~~l~~f~ 77 (88)
..+.+.++..--.+.+.+..
T Consensus 149 ~a~~~~~~~~~~~~~l~~~~ 168 (346)
T TIGR01404 149 LALIFYLFLKNYLEELFALP 168 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997499999851
No 38
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=24.49 E-value=56 Score=14.36 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 9999999999999999999999999999999999999988--46536988
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQ--IQEVTLTF 51 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQ--IQEqTLsF 51 (88)
..+.|+..+.+...+.++.+.++.+.++|+..|++-|..+ .-|..++.
T Consensus 84 ~~V~~~i~~~lp~Tl~L~~~a~~i~~~lgi~lGi~aa~~~~~~~D~~~~~ 133 (306)
T PRK09471 84 YSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMG 133 (306)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 88899999888999999999999999999999999998347516199999
No 39
>pfam07343 DUF1475 Protein of unknown function (DUF1475). This family consists of several hypothetical plant proteins of around 250 residues in length. Members of this family seem to be found exclusively in Arabidopsis thaliana. The function of this family is unknown.
Probab=23.75 E-value=58 Score=14.28 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780519|r 64 ISAPFIGGQISSFVTLVLS 82 (88)
Q Consensus 64 ~~~pwm~~~l~~f~~~if~ 82 (88)
++.|||..++.||-.|.+.
T Consensus 166 LltPWm~atLidFYinv~a 184 (254)
T pfam07343 166 LLTPWMAALLIDFYIDVAA 184 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 6108999999999887887
No 40
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=23.33 E-value=60 Score=14.24 Aligned_cols=44 Identities=25% Similarity=0.186 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999884653698899999999999999999999999999999
Q gi|254780519|r 36 AFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 (88)
Q Consensus 36 si~QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~i 80 (88)
..-+.+.||+|-=..=+-|.+||..+......|+.. ..+|.+.+
T Consensus 37 p~~~~lq~I~~sltGp~A~~iAVi~Ii~~Gi~~~fG-~~~~~r~~ 80 (108)
T COG3838 37 PWETPLQQILQSLTGPVAKTIAVIGIIAIGIMLIFG-RLDWRRAL 80 (108)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 578899999999636088999999999999999984-50167788
No 41
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.91 E-value=61 Score=14.19 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999
Q gi|254780519|r 7 LEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 7 i~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
.......+...+....|+++..+++|++.++.|.
T Consensus 79 ~~~~~~~l~~~~~~~lpi~~~~~i~~i~~~~~q~ 112 (383)
T PRK12468 79 LRQIGMLLRQTLLAMLPIFAGLVIVALAVPMLLG 112 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999999999710
No 42
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.11 E-value=63 Score=14.11 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999
Q gi|254780519|r 6 VLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40 (88)
Q Consensus 6 vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA 40 (88)
..++....+.....+.+|.+++.++.|++.++.|.
T Consensus 71 ~~~l~~~~~~~~~~~~~p~~~~~~~~~i~~~~~q~ 105 (349)
T PRK12721 71 LTQISGALLESLMSILLFLGAGVIVATVGSVILQV 105 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999999730
No 43
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=20.33 E-value=70 Score=13.91 Aligned_cols=47 Identities=28% Similarity=0.533 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999988--------------------------46536988999999999999
Q gi|254780519|r 17 ILSSSAPVLFSAMFLGILIAFLQALTQ--------------------------IQEVTLTFVPKIIAVFITLI 63 (88)
Q Consensus 17 ~l~ls~P~Ll~alvvGl~Isi~QA~TQ--------------------------IQEqTLsFvPKliav~~~l~ 63 (88)
..++++|.=+.-+++|...++....+. .--..+-|.||++++..++.
T Consensus 400 msYlssPlWl~fL~~~~~~~~~~~~~~~~yf~~~~~lfp~wp~~~~~~a~~L~~~t~~lL~~PKll~~~~~~~ 472 (663)
T PRK05454 400 MSYLSAPLWLLFLLLGTALALQAALIRPEYFLQPYQLFPVWPQWDPELALALFALTMALLFLPKLLGLLLVLL 472 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998789999999999999997352333432676444667865461889999999999999999999999996
No 44
>TIGR01401 fliR_like_III type III secretion apparatus protein SpaR/YscT/HrcT; InterPro: IPR006304 These sequences represent members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (IPR006303 from INTERPRO).; GO: 0006810 transport, 0016021 integral to membrane.
Probab=20.29 E-value=70 Score=13.91 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999999999999999-9998846536988999999999999999999999999999999
Q gi|254780519|r 3 EADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFL-QALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLVL 81 (88)
Q Consensus 3 ~~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~-QA~TQIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 81 (88)
.+.+.+..++....++..|+|++.+-+.+-+..|+. ..+-|.|==.||---|=+.....+++..+...++..+.....-
T Consensus 175 ~~~~~~~~~~~~~~~~~la~P~i~~l~L~e~~lgLl~RfApQLNvF~LslpiKS~~a~~~Llly~~~l~~~~~~~~~~~~ 254 (262)
T TIGR01401 175 LSFLLAQLDQLMALALLLAAPVIIVLLLAELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLLEEALEELLLLS 254 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999985522533777867899999999999999999999999987534
Q ss_pred HHH
Q ss_conf 993
Q gi|254780519|r 82 SRI 84 (88)
Q Consensus 82 ~~i 84 (88)
+..
T Consensus 255 ~~~ 257 (262)
T TIGR01401 255 DQL 257 (262)
T ss_pred HHH
T ss_conf 567
No 45
>pfam11190 DUF2976 Protein of unknown function (DUF2976). This family of proteins has no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=20.25 E-value=70 Score=13.90 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999998846536988999--99999999999999999999
Q gi|254780519|r 4 ADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPK--IIAVFITLIISAPFIGGQIS 74 (88)
Q Consensus 4 ~~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~TQIQEqTLsFvPK--liav~~~l~~~~pwm~~~l~ 74 (88)
.+.++..+.-.+-...+.+-++.++...++..+.++.-.-+||..-+.-+= .++|..+++++.-|+..+-.
T Consensus 13 ~~~m~ti~~y~~dg~~l~gL~i~a~aF~~Va~~ai~ty~ei~~GK~~W~~fg~~viVGviLlv~viwLlt~A~ 85 (87)
T pfam11190 13 GDIMQTIKNYLKDGFILLGLLLAAAAFLGVAKAALGTYNEIRDGKKTWGDFGAIVIVGVVLLVFVIWLVTKAT 85 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6799999999998899999999999999999999978999972612088631378768599999999985332
No 46
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.23 E-value=70 Score=13.90 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_conf 99999999999999999999999999999999999998--846536988
Q gi|254780519|r 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALT--QIQEVTLTF 51 (88)
Q Consensus 5 ~vi~l~~~al~~~l~ls~P~Ll~alvvGl~Isi~QA~T--QIQEqTLsF 51 (88)
.+.+...+.+...+.++.+.++.+.++|+..|++-|.. +.-|..+++
T Consensus 86 pV~~~I~~~lp~Tl~L~~~a~iis~~lgi~LG~~aa~~~~~~~D~~~~~ 134 (317)
T COG0601 86 PVADLILERLPATLELALVALILAVLLGIPLGILAALKRGSWIDRLLRV 134 (317)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6899999884999999999999999999999999994489759999999
Done!