RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein FliQ [Candidatus Liberibacter asiaticus str. psy62] (88 letters) >gnl|CDD|180349 PRK06010, fliQ, flagellar biosynthesis protein FliQ; Reviewed. Length = 88 Score = 110 bits (276), Expect = 1e-25 Identities = 50/88 (56%), Positives = 68/88 (77%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60 MNEAD L+I R A+WT+L +S P + +AM +G+ IA QALTQIQE+TLTFVPKI+A+F+ Sbjct: 1 MNEADALDIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQIQEMTLTFVPKIVAIFV 60 Query: 61 TLIISAPFIGGQISSFVTLVLSRIQSSL 88 TL+++ PF+G QIS+F L+ SRI Sbjct: 61 TLLLTLPFMGAQISAFTLLIYSRIAGGF 88 >gnl|CDD|139219 PRK12781, fliQ, flagellar biosynthesis protein FliQ; Reviewed. Length = 88 Score = 88.7 bits (220), Expect = 3e-19 Identities = 48/86 (55%), Positives = 64/86 (74%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60 MNE D LE+ RAA+WTI+ +S P + +AM +GI IA LQALTQIQEVTLTFVPKI+ + I Sbjct: 1 MNERDALELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALTQIQEVTLTFVPKIVVILI 60 Query: 61 TLIISAPFIGGQISSFVTLVLSRIQS 86 + ++ F+G QI +F +V RI+S Sbjct: 61 VMAVTGSFVGAQIYAFTEMVYGRIES 86 >gnl|CDD|130469 TIGR01402, fliQ, flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems. Length = 88 Score = 71.5 bits (176), Expect = 5e-14 Identities = 36/85 (42%), Positives = 54/85 (63%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60 M E VL++ R A+W L SAPVL A+ +G++I+ QA TQIQE TL+F+PKIIA+ + Sbjct: 1 MTEETVLDLGREAIWLTLLLSAPVLLVALVVGLVISIFQAATQIQEQTLSFIPKIIAILL 60 Query: 61 TLIISAPFIGGQISSFVTLVLSRIQ 85 L + P++ ++ F + RI Sbjct: 61 ALALLGPWMLTKLLDFTREIFQRIP 85 >gnl|CDD|180210 PRK05700, fliQ, flagellar biosynthesis protein FliQ; Validated. Length = 89 Score = 67.6 bits (166), Expect = 6e-13 Identities = 32/84 (38%), Positives = 53/84 (63%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60 M V+++ R AM L +AP+L A+ +G++++ QA TQI E TL+F+PKI+AV + Sbjct: 1 MTPESVMDLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQINEQTLSFIPKILAVLL 60 Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84 TLII+ P++ + + + S I Sbjct: 61 TLIIAGPWMLNTLLDYTRTLFSNI 84 >gnl|CDD|185248 PRK15350, PRK15350, type III secretion system protein SsaS; Provisional. Length = 88 Score = 53.5 bits (128), Expect = 1e-08 Identities = 29/84 (34%), Positives = 58/84 (69%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFI 60 MN++++ + +W +L +S PV+ A +G++++ +QALTQIQ+ TL F+ K++A+ I Sbjct: 1 MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQIQDQTLQFMIKLLAIAI 60 Query: 61 TLIISAPFIGGQISSFVTLVLSRI 84 TL++S P++ G + ++ ++ RI Sbjct: 61 TLMVSYPWLSGILLNYTRQIMLRI 84 >gnl|CDD|130470 TIGR01403, fliQ_rel_III, type III secretion protein, HrpO family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs. Length = 81 Score = 53.1 bits (128), Expect = 1e-08 Identities = 31/80 (38%), Positives = 54/80 (67%) Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64 D++++ A+ +L S P + A +G+L++ LQALTQ+Q+ TL F K+IAVFITL++ Sbjct: 1 DIVQLTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQLQDQTLPFAIKLIAVFITLML 60 Query: 65 SAPFIGGQISSFVTLVLSRI 84 +A ++G +I +F + + I Sbjct: 61 TAGWLGAEILNFANQIFTMI 80 >gnl|CDD|185233 PRK15333, PRK15333, type III secretion system protein SpaQ; Provisional. Length = 86 Score = 32.7 bits (74), Expect = 0.022 Identities = 20/72 (27%), Positives = 38/72 (52%) Query: 5 DVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLII 64 D++ A++ +L S A +G+L+ Q +TQ+QE TL F K++ V + L + Sbjct: 3 DLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQTLPFGIKLLGVCLCLFL 62 Query: 65 SAPFIGGQISSF 76 + + G + S+ Sbjct: 63 LSGWYGEVLLSY 74 >gnl|CDD|178775 PLN03237, PLN03237, DNA topoisomerase 2; Provisional. Length = 1465 Score = 31.0 bits (70), Expect = 0.069 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 32 GILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTL 79 G+LI F+ + +L VP + FIT I+ A G ++ SF ++ Sbjct: 545 GLLINFIHSFWP----SLLKVPSFLVEFITPIVKATRRGKKVLSFYSM 588 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 27.8 bits (62), Expect = 0.61 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 17 ILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSF 76 + S +F+A+F+G F + T +Q + ++ AVF+ ++ P I + F Sbjct: 1098 LYSKFFLTIFAALFIGF--TFFKVGTSLQGLQ----NQMFAVFMATVLFNPLIQQYLPPF 1151 Query: 77 VTL 79 V Sbjct: 1152 VAQ 1154 >gnl|CDD|180212 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed. Length = 359 Score = 26.3 bits (59), Expect = 1.9 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%) Query: 1 MNEADVLEIARAAMWTILSSSAPVLFSAMFLGILIAFLQALTQIQEVTLTFVPKIIA 57 + DVL + + L + P+L + +L LQ L F PK + Sbjct: 73 FDPNDVLSLFLLLLLEALLALLPILLLLVLAALLAPVLQ-------GGLLFSPKALK 122 >gnl|CDD|167418 PRK02726, PRK02726, molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional. Length = 200 Score = 25.0 bits (55), Expect = 4.7 Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 32 GILIAFLQALTQIQ 45 G L+AF Q L QI+ Sbjct: 79 GPLVAFAQGLPQIK 92 >gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated. Length = 356 Score = 24.8 bits (54), Expect = 4.8 Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 11 RAAMWTILSSSAPVLFSAMFLGILIAFL 38 + + IL++S P+L + F+G+L+ FL Sbjct: 77 KNCLILILTASLPLLGAVAFVGVLVGFL 104 >gnl|CDD|161839 TIGR00361, ComEC_Rec2, DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown. Length = 662 Score = 24.9 bits (54), Expect = 4.9 Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 34 LIAFLQALTQIQEVTLTFVPKIIAVFITLIISAPFIGGQISSFVTLV 80 LI+F + + T VP I+A + L +S F Q S F L+ Sbjct: 321 LISFPANMLAVPFYTFCIVPLILAAVLLLSLSGSFGRLQGSWFDLLI 367 >gnl|CDD|178105 PLN02487, PLN02487, zeta-carotene desaturase. Length = 569 Score = 24.8 bits (54), Expect = 5.9 Identities = 9/13 (69%), Positives = 11/13 (84%) Query: 65 SAPFIGGQISSFV 77 S PFIGG++ SFV Sbjct: 106 SRPFIGGKVGSFV 118 >gnl|CDD|180034 PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional. Length = 448 Score = 24.4 bits (54), Expect = 6.6 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 11/42 (26%) Query: 52 VPKIIAVFITLIISAPF-------IGGQISSFVT--LVLSRI 84 P+ A+F+T + + P I Q +F VLSR+ Sbjct: 146 TPR--AIFVTAMDTNPLAADPEVIIAEQEEAFQAGLTVLSRL 185 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.330 0.139 0.373 Gapped Lambda K H 0.267 0.0726 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,355,116 Number of extensions: 74919 Number of successful extensions: 436 Number of sequences better than 10.0: 1 Number of HSP's gapped: 430 Number of HSP's successfully gapped: 100 Length of query: 88 Length of database: 5,994,473 Length adjustment: 57 Effective length of query: 31 Effective length of database: 4,762,817 Effective search space: 147647327 Effective search space used: 147647327 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.0 bits)