RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780519|ref|YP_003064932.1| flagellar biosynthesis protein
FliQ [Candidatus Liberibacter asiaticus str. psy62]
         (88 letters)



>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; alternative
           splicing, fatty acid metabolism, transit peptide,
           disease mutation, lipid metabolism; HET: FAD TH3; 1.45A
           {Homo sapiens} PDB: 3b96_A* (A:41-133,A:294-412)
          Length = 212

 Score = 24.3 bits (52), Expect = 6.5
 Identities = 3/33 (9%), Positives = 10/33 (30%)

Query: 8   EIARAAMWTILSSSAPVLFSAMFLGILIAFLQA 40
            +    +   ++  A    +A   G +   +  
Sbjct: 78  IVGMHDLGVGITLGAHFGMAAALAGTMRGIIAK 110


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.139    0.373 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 555,485
Number of extensions: 17738
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 14
Length of query: 88
Length of database: 4,956,049
Length adjustment: 50
Effective length of query: 38
Effective length of database: 3,265,799
Effective search space: 124100362
Effective search space used: 124100362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.4 bits)