HHsearch alignment for GI: 254780520 and conserved domain: COG1843

>COG1843 FlgD Flagellar hook capping protein [Cell motility and secretion].

Probab=99.97  E-value=1.9e-31  Score=201.25  Aligned_cols=90  Identities=47%  Similarity=0.664  Sum_probs=78.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCEEEC
Q ss_conf             6677333388999999999832998999889789999999999999999999999999999997---6455322614663
Q gi|254780520|r   16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQASSYIGKNITN   92 (131)
Q Consensus        16 ~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~~~~---~~a~sliGk~V~~   92 (131)
T Consensus        22 ~~~~~~~l~kd~FLkLLiaQLknQDPtnPmd~~q~isQmAQfS~vEq~~nmn~~l~~l~~~~~~~~~l~a~~lIGk~V~v  101 (222)
T COG1843          22 STSSNASLGKDDFLKLLIAQLKNQDPTNPMDNTEFISQLAQFSQVEQMENMNTTLESLSSQMTSSQTLQASNLIGKTVMV  101 (222)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             46665442688899999999742799998760479999998988999999999999999876420456777405857996


Q ss_pred             CCCEEEEEEEEEE
Q ss_conf             8971899997888
Q gi|254780520|r   93 ADGSISGVVNAIQ  105 (131)
Q Consensus        93 ~~~~~~G~v~~V~  105 (131)
T Consensus       102 ~~~~~~~~~~~~~  114 (222)
T COG1843         102 ADGKVTLVDGTVK  114 (222)
T ss_pred             ECCCEEEEEEEEE
T ss_conf             0671365200478