HHsearch alignment for GI: 254780520 and conserved domain: PRK05842
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed.
Probab=99.97 E-value=3.1e-30 Score=194.22 Aligned_cols=66 Identities=32% Similarity=0.529 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 555556677333388999999999832998999889789999999999999999999999999999
Q gi|254780520|r 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 (131)
Q Consensus 11 ~~~~~~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~ 76 (131)
T Consensus 15 ~~~~~~~~~~~~LdkDaFLkLLvtQLqnQDPlnPMDn~e~iaQLAQfStvEq~~~~n~tl~~~s~~ 80 (269)
T PRK05842 15 ERKKEQPTIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASA 80 (269)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877543556455588899999999973279999866799999999898899888776789999987