HHsearch alignment for GI: 254780520 and conserved domain: PRK06009
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed.
Probab=100.00 E-value=2.2e-38 Score=241.20 Aligned_cols=120 Identities=44% Similarity=0.690 Sum_probs=112.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 55555667733338899999999983299899988978999999999999999999999999999999764553226146
Q gi|254780520|r 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 (131)
Q Consensus 11 ~~~~~~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~~~~~~a~sliGk~V 90 (131)
T Consensus 16 ~~~s~s~~~~~~l~~d~Fl~Ll~aQl~nQDP~~P~d~~e~~~QlAqfs~lEq~~~~n~~l~~ll~~~~l~qA~~lIGktV 95 (135)
T PRK06009 16 ASSSTSAANKATVNYDSFLQLLVAQMKNQDPTQPMDSTQYMSQLATFSQVEQSVQTNSKLDTLLASSSLSQAEGLIGRTV 95 (135)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
T ss_conf 66665554313269999999999998348989999879999999999999999999999999999888887887628079
Q ss_pred ECCCCEEEEEEEEEEECCCCEEEEEECCEEEECCCCEEEE
Q ss_conf 6389718999978886279669999789789623105860
Q gi|254780520|r 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 (131)
Q Consensus 91 ~~~~~~~~G~v~~V~~~~~g~~~~~v~~~~v~~~~v~~V~ 130 (131)
T Consensus 96 t~~Dg~vtG~V~sV~~~~dg~~a~l~dG~~v~~~~gv~is 135 (135)
T PRK06009 96 TSADGSITGVVKSVTIYSDGIIATLEDGKKVLLGPGVTIS 135 (135)
T ss_pred ECCCCEEEEEEEEEEEECCCEEEEEECCCEEEECCCCEEC
T ss_conf 7079748999999999389449998389889837871619