HHsearch alignment for GI: 254780520 and conserved domain: PRK06009

>PRK06009 flgD flagellar basal body rod modification protein; Reviewed.
Probab=100.00  E-value=2.2e-38  Score=241.20  Aligned_cols=120  Identities=44%  Similarity=0.690  Sum_probs=112.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             55555667733338899999999983299899988978999999999999999999999999999999764553226146
Q gi|254780520|r   11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI   90 (131)
Q Consensus        11 ~~~~~~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~~~~~~a~sliGk~V   90 (131)
T Consensus        16 ~~~s~s~~~~~~l~~d~Fl~Ll~aQl~nQDP~~P~d~~e~~~QlAqfs~lEq~~~~n~~l~~ll~~~~l~qA~~lIGktV   95 (135)
T PRK06009         16 ASSSTSAANKATVNYDSFLQLLVAQMKNQDPTQPMDSTQYMSQLATFSQVEQSVQTNSKLDTLLASSSLSQAEGLIGRTV   95 (135)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
T ss_conf             66665554313269999999999998348989999879999999999999999999999999999888887887628079


Q ss_pred             ECCCCEEEEEEEEEEECCCCEEEEEECCEEEECCCCEEEE
Q ss_conf             6389718999978886279669999789789623105860
Q gi|254780520|r   91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS  130 (131)
Q Consensus        91 ~~~~~~~~G~v~~V~~~~~g~~~~~v~~~~v~~~~v~~V~  130 (131)
T Consensus        96 t~~Dg~vtG~V~sV~~~~dg~~a~l~dG~~v~~~~gv~is  135 (135)
T PRK06009         96 TSADGSITGVVKSVTIYSDGIIATLEDGKKVLLGPGVTIS  135 (135)
T ss_pred             ECCCCEEEEEEEEEEEECCCEEEEEECCCEEEECCCCEEC
T ss_conf             7079748999999999389449998389889837871619