HHsearch alignment for GI: 254780520 and conserved domain: PRK12633
>PRK12633 flgD flagellar basal body rod modification protein; Provisional.
Probab=99.97 E-value=2.1e-30 Score=195.18 Aligned_cols=82 Identities=33% Similarity=0.440 Sum_probs=72.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCEEEC
Q ss_conf 66773333889999999998329989998897899999999999999999999999999---999976455322614663
Q gi|254780520|r 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITN 92 (131)
Q Consensus 16 ~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~---~~~~~~~a~sliGk~V~~ 92 (131)
T Consensus 19 ~~~~~~~~~qd~FLkLL~tQLqNQDPl~PmDn~ef~aQLAQfStvE~~~~~n~~l~~l~~~~~~~q~l~a~slIGk~V~~ 98 (230)
T PRK12633 19 GSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLM 98 (230)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 78852156799999999999841899998777899999999999999999999999999999999999998743967997
Q ss_pred CCCEE
Q ss_conf 89718
Q gi|254780520|r 93 ADGSI 97 (131)
Q Consensus 93 ~~~~~ 97 (131)
T Consensus 99 ~g~~~ 103 (230)
T PRK12633 99 PGDKV 103 (230)
T ss_pred CCCEE
T ss_conf 26567