HHsearch alignment for GI: 254780520 and conserved domain: PRK12633

>PRK12633 flgD flagellar basal body rod modification protein; Provisional.
Probab=99.97  E-value=2.1e-30  Score=195.18  Aligned_cols=82  Identities=33%  Similarity=0.440  Sum_probs=72.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCEEEC
Q ss_conf             66773333889999999998329989998897899999999999999999999999999---999976455322614663
Q gi|254780520|r   16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITN   92 (131)
Q Consensus        16 ~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~---~~~~~~~a~sliGk~V~~   92 (131)
T Consensus        19 ~~~~~~~~~qd~FLkLL~tQLqNQDPl~PmDn~ef~aQLAQfStvE~~~~~n~~l~~l~~~~~~~q~l~a~slIGk~V~~   98 (230)
T PRK12633         19 GSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLM   98 (230)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             78852156799999999999841899998777899999999999999999999999999999999999998743967997


Q ss_pred             CCCEE
Q ss_conf             89718
Q gi|254780520|r   93 ADGSI   97 (131)
Q Consensus        93 ~~~~~   97 (131)
T Consensus        99 ~g~~~  103 (230)
T PRK12633         99 PGDKV  103 (230)
T ss_pred             CCCEE
T ss_conf             26567