HHsearch alignment for GI: 254780520 and conserved domain: PRK12634
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed.
Probab=99.98 E-value=1.4e-31 Score=201.99 Aligned_cols=82 Identities=30% Similarity=0.549 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCE
Q ss_conf 5556677333388999999999832998999889789999999999999999999999999---9999976455322614
Q gi|254780520|r 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89 (131)
Q Consensus 13 ~~~~~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~---~~~~~~~~a~sliGk~ 89 (131)
T Consensus 17 ~~~~~~~~~~Lg~~dFL~LL~tQLqNQDPl~PmD~~ef~aQLAQfS~vE~~~~~n~~l~~l~~~~~s~q~l~a~slIGk~ 96 (221)
T PRK12634 17 SSKVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDSMNSDQVLKGAALVGHN 96 (221)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 78888752101889999999999852899998866889999998999999999999999999999888998888631967
Q ss_pred EECCC
Q ss_conf 66389
Q gi|254780520|r 90 ITNAD 94 (131)
Q Consensus 90 V~~~~ 94 (131)
T Consensus 97 V~v~~ 101 (221)
T PRK12634 97 VLVPS 101 (221)
T ss_pred EEECC
T ss_conf 99738