HHsearch alignment for GI: 254780520 and conserved domain: pfam03963
>pfam03963 FlgD Flagellar hook capping protein. FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits.
Probab=99.97 E-value=2.2e-30 Score=195.07 Aligned_cols=80 Identities=44% Similarity=0.620 Sum_probs=72.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCEEECCC
Q ss_conf 77333388999999999832998999889789999999999999999999999999999---997645532261466389
Q gi|254780520|r 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNAD 94 (131)
Q Consensus 18 ~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~---~~~~~a~sliGk~V~~~~ 94 (131)
T Consensus 21 ~~~~~l~~d~FLkLLvaQLqnQDPl~P~D~~ef~sQlAQfS~vEq~~~~n~~l~~l~~~~~~~~~~~a~~lIGk~V~~~~ 100 (140)
T pfam03963 21 TSSSELDKDDFLKLLTAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIQNLNTTLESLAASMQSSQALQASSLIGKTVLVPG 100 (140)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 66442589999999999984489999976699999999999999999999999999999999999999986499899628
Q ss_pred CEE
Q ss_conf 718
Q gi|254780520|r 95 GSI 97 (131)
Q Consensus 95 ~~~ 97 (131)
T Consensus 101 ~~~ 103 (140)
T pfam03963 101 NTV 103 (140)
T ss_pred CEE
T ss_conf 614