HHsearch alignment for GI: 254780520 and conserved domain: pfam03963

>pfam03963 FlgD Flagellar hook capping protein. FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits.
Probab=99.97  E-value=2.2e-30  Score=195.07  Aligned_cols=80  Identities=44%  Similarity=0.620  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCEEECCC
Q ss_conf             77333388999999999832998999889789999999999999999999999999999---997645532261466389
Q gi|254780520|r   18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNAD   94 (131)
Q Consensus        18 ~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~isQlAqfs~leq~~~~~~~l~~~~~~---~~~~~a~sliGk~V~~~~   94 (131)
T Consensus        21 ~~~~~l~~d~FLkLLvaQLqnQDPl~P~D~~ef~sQlAQfS~vEq~~~~n~~l~~l~~~~~~~~~~~a~~lIGk~V~~~~  100 (140)
T pfam03963        21 TSSSELDKDDFLKLLTAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIQNLNTTLESLAASMQSSQALQASSLIGKTVLVPG  100 (140)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             66442589999999999984489999976699999999999999999999999999999999999999986499899628


Q ss_pred             CEE
Q ss_conf             718
Q gi|254780520|r   95 GSI   97 (131)
Q Consensus        95 ~~~   97 (131)
T Consensus       101 ~~~  103 (140)
T pfam03963       101 NTV  103 (140)
T ss_pred             CEE
T ss_conf             614