Query gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 131 No_of_seqs 110 out of 613 Neff 5.5 Searched_HMMs 13730 Date Wed Jun 1 09:41:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780520.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pm3a_ b.41.1.2 (A:) MTH1895 53.4 6.1 0.00045 16.9 5.5 49 83-131 6-69 (78) 2 d1avsa_ a.39.1.5 (A:) Troponin 20.4 23 0.0016 13.6 2.0 17 21-37 65-81 (81) 3 d1biaa2 b.34.1.1 (A:271-317) B 19.9 23 0.0017 13.5 5.6 38 85-124 1-40 (47) 4 d3cr5x1 a.39.1.2 (X:0-89) Calc 18.6 25 0.0018 13.4 3.2 23 16-38 21-43 (90) 5 d1k8ua_ a.39.1.2 (A:) Calcycli 17.0 27 0.002 13.1 2.4 35 17-51 22-56 (89) 6 d1wrka1 a.39.1.5 (A:4-85) Trop 16.3 28 0.002 13.0 1.8 16 20-35 66-81 (82) 7 d2pi2e1 b.40.4.3 (E:3-117) Rep 11.9 38 0.0027 12.3 2.7 19 82-105 15-33 (115) 8 d1f54a_ a.39.1.5 (A:) Calmodul 11.0 32 0.0023 12.7 0.5 17 20-36 60-76 (77) 9 d1j55a_ a.39.1.2 (A:) Calcycli 10.9 41 0.003 12.1 3.7 37 15-51 20-58 (94) 10 d1qlsa_ a.39.1.2 (A:) Calcycli 7.7 45 0.0033 11.8 0.2 30 15-44 20-51 (95) No 1 >d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=53.41 E-value=6.1 Score=16.85 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=31.5 Q ss_pred HHHCCCEEECCCCEEEEEEEEEEECCC-CE-EEEEE-------------CCEEEECCCCEEEEC Q ss_conf 532261466389718999978886279-66-99997-------------897896231058609 Q gi|254780520|r 83 SSYIGKNITNADGSISGVVNAIQVSST-GL-TAITV-------------DNTEIPITTGIRISN 131 (131) Q Consensus 83 ~sliGk~V~~~~~~~~G~v~~V~~~~~-g~-~~~~v-------------~~~~v~~~~v~~V~d 131 (131) --||||.|.......-|+|..|.+... +. ..+.+ ...-||.+.|.+|.| T Consensus 6 ~dliGk~VlD~~A~~IGkV~DvEiD~esg~vtsLiI~k~Gis~~igl~~~e~~Vp~e~V~~IGD 69 (78) T d1pm3a_ 6 EEMVGKEVLDSSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD 69 (78) T ss_dssp TTSSSCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS T ss_pred HHHHCCHHCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCHHHCCCCCEEECCHHHHHHHCC T ss_conf 7572850006641011235457986777806899973764110100048708817999743224 No 2 >d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Probab=20.41 E-value=23 Score=13.59 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=8.9 Q ss_pred CCCCHHHHHHHHHHHHC Q ss_conf 33388999999999832 Q gi|254780520|r 21 KTLGQDAFLKLLITQIK 37 (131) Q Consensus 21 ~~l~~d~FLkLL~aQL~ 37 (131) ..++.++|+++|...|| T Consensus 65 g~I~~~eF~~~m~~k~k 81 (81) T d1avsa_ 65 GTIDFEEFLVMMVRQMK 81 (81) T ss_dssp SSEEHHHHHHHHHHHHC T ss_pred CEEEHHHHHHHHHHHCC T ss_conf 86829999999998539 No 3 >d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=19.88 E-value=23 Score=13.52 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=25.1 Q ss_pred HCCCEEEC--CCCEEEEEEEEEEECCCCEEEEEECCEEEECC Q ss_conf 22614663--89718999978886279669999789789623 Q gi|254780520|r 85 YIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 (131) Q Consensus 85 liGk~V~~--~~~~~~G~v~~V~~~~~g~~~~~v~~~~v~~~ 124 (131) |+||.|.. .+.++.|+...+ .+.|.-.+..++..-.+. T Consensus 1 f~gk~V~v~~g~~~i~G~a~gI--d~~G~Lll~t~~g~~~~~ 40 (47) T d1biaa2 1 FINRPVKLIIGDKEIFGISRGI--DKQGALLLEQDGIIKPWM 40 (47) T ss_dssp TTTSEEEEEETTEEEEEEEEEE--CTTSCEEEEETTEEEEES T ss_pred CCCCEEEEEECCEEEEEEEEEE--CCCCCEEEEECCCEEEEE T ss_conf 9898999997996999999539--999749999799889999 No 4 >d3cr5x1 a.39.1.2 (X:0-89) Calcyclin (S100) {Cow (Bos taurus), s100b [TaxId: 9913]} Probab=18.63 E-value=25 Score=13.36 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=18.6 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 66773333889999999998329 Q gi|254780520|r 16 KSKSKKTLGQDAFLKLLITQIKH 38 (131) Q Consensus 16 ~~~~~~~l~~d~FLkLL~aQL~n 38 (131) +......|.+++|-+||-.+|.+ T Consensus 21 ~~G~~~tLsk~Elk~Ll~~El~~ 43 (90) T d3cr5x1 21 REGDKHKLKKSELKELINNELSH 43 (90) T ss_dssp SSSSTTSBCHHHHHHHHHHHCTT T ss_pred CCCCCCCCCHHHHHHHHHHHHHH T ss_conf 58985728799999999998789 No 5 >d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]} Probab=17.02 E-value=27 Score=13.13 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=23.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH Q ss_conf 67733338899999999983299899988978999 Q gi|254780520|r 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQV 51 (131) Q Consensus 17 ~~~~~~l~~d~FLkLL~aQL~nQDP~~P~d~~e~i 51 (131) ......|.+.+|-.|+..++.+-.+.+|-.-.+++ T Consensus 22 dg~~~~ls~~Elk~Ll~~e~~~~~~~~~~~~~~~~ 56 (89) T d1k8ua_ 22 EGDKHTLSKKELKELIQKELTIGSKLQDAEIARLM 56 (89) T ss_dssp SSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHH T ss_pred CCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 89978436999999999988754238799999999 No 6 >d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Probab=16.34 E-value=28 Score=13.03 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=8.7 Q ss_pred CCCCCHHHHHHHHHHH Q ss_conf 3333889999999998 Q gi|254780520|r 20 KKTLGQDAFLKLLITQ 35 (131) Q Consensus 20 ~~~l~~d~FLkLL~aQ 35 (131) +..++.++|+++|.-+ T Consensus 66 ~G~I~f~eFl~im~~k 81 (82) T d1wrka1 66 SGTVDFDEFLVMMVRS 81 (82) T ss_dssp CSSBCHHHHHHHHHHC T ss_pred CCEEEHHHHHHHHHHH T ss_conf 9747399999999854 No 7 >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} Probab=11.90 E-value=38 Score=12.30 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=10.7 Q ss_pred HHHHCCCEEECCCCEEEEEEEEEE Q ss_conf 553226146638971899997888 Q gi|254780520|r 82 ASSYIGKNITNADGSISGVVNAIQ 105 (131) Q Consensus 82 a~sliGk~V~~~~~~~~G~v~~V~ 105 (131) -..++||.|... |+|.++. T Consensus 15 L~~~~Gk~V~iv-----GkV~~v~ 33 (115) T d2pi2e1 15 LAQFIDKPVCFV-----GRLEKIH 33 (115) T ss_dssp GGGSTTCEEEEE-----EEEEEEC T ss_pred HHHHCCCEEEEE-----EEEEEEC T ss_conf 876289769999-----9998885 No 8 >d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=10.95 E-value=32 Score=12.72 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=8.4 Q ss_pred CCCCCHHHHHHHHHHHH Q ss_conf 33338899999999983 Q gi|254780520|r 20 KKTLGQDAFLKLLITQI 36 (131) Q Consensus 20 ~~~l~~d~FLkLL~aQL 36 (131) ...++.++|+.+|...| T Consensus 60 ~g~I~~~eF~~~m~~~~ 76 (77) T d1f54a_ 60 NHQIEFSEFLALMSRQL 76 (77) T ss_dssp CCEEEHHHHHHHHTTSC T ss_pred CCEEEHHHHHHHHHHHC T ss_conf 98482999999999863 No 9 >d1j55a_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100p [TaxId: 9606]} Probab=10.90 E-value=41 Score=12.10 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=24.6 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC--CCCCCCCCHHHHH Q ss_conf 566773333889999999998329--9899988978999 Q gi|254780520|r 15 SKSKSKKTLGQDAFLKLLITQIKH--QDPTEPMKASEQV 51 (131) Q Consensus 15 ~~~~~~~~l~~d~FLkLL~aQL~n--QDP~~P~d~~e~i 51 (131) .......+|.+.+|-+||-.||.+ +.|-+|..-.+++ T Consensus 20 ~~~g~~~tLsk~Elk~Ll~~El~~~l~~~~d~~~vd~~m 58 (94) T d1j55a_ 20 GSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLL 58 (94) T ss_dssp TSSSCTTEECHHHHHHHHHHHSTTCC------CHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 648983628899999999998799865899889999999 No 10 >d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]} Probab=7.66 E-value=45 Score=11.84 Aligned_cols=30 Identities=17% Similarity=0.455 Sum_probs=20.1 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC--CCCCCC Q ss_conf 566773333889999999998329--989998 Q gi|254780520|r 15 SKSKSKKTLGQDAFLKLLITQIKH--QDPTEP 44 (131) Q Consensus 15 ~~~~~~~~l~~d~FLkLL~aQL~n--QDP~~P 44 (131) .+.....+|.+.+|-+||..||.+ +.|-+| T Consensus 20 ~~~G~~~tLsk~Elk~Ll~~El~~~l~~~~d~ 51 (95) T d1qlsa_ 20 GRDGNNTKISKTEFLIFMNTELAAFTQNQKDP 51 (95) T ss_dssp TTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH T ss_conf 74898672779999999999878986589988 Done!