BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 131
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM
Sbjct: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE
Sbjct: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
Query: 121 IPITTGIRISN 131
IPITTGIRISN
Sbjct: 121 IPITTGIRISN 131
>gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 125
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/124 (75%), Positives = 105/124 (84%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+N TQ+E SK +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM
Sbjct: 1 MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG
Sbjct: 61 NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120
Query: 127 IRIS 130
IR+S
Sbjct: 121 IRVS 124
>gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii
NGR234]
gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii
NGR234]
Length = 148
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 84/108 (77%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA
Sbjct: 33 LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S+YIGK IT++DG SGVV ++V+S G+TAIT D EI I TGI +S
Sbjct: 93 STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140
>gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN
42]
gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
Length = 142
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 88/115 (76%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++SK TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S
Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 81 SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135
>gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 85/112 (75%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 83 TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134
>gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli
Brasil 5]
Length = 118
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 84/110 (76%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Q
Sbjct: 2 TLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLTQ 61
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
ASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 62 ASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111
>gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 142
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 85/115 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++SK TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S
Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI I++
Sbjct: 81 SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135
>gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus
str. 2308 A]
gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus
str. 2308 A]
gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
Length = 151
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 41 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151
>gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 1 str. 16M]
gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330]
gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv.
1 str. 9-941]
gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis
biovar Abortus 2308]
gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC
25840]
gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC
23365]
gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC
23445]
gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus
S19]
gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str.
Cudo]
gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis
ATCC 23457]
gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv.
6 str. 870]
gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv.
3 str. Tulya]
gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv.
2 str. 86/8/59]
gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5
str. 513]
gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3
str. 686]
gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella
pinnipedialis M163/99/10]
gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella
pinnipedialis B2/94]
gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti
M644/93/1]
gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti
M13/05/1]
gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv.
4 str. 292]
gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM
4915]
gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella
pinnipedialis M292/94/1]
gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 1 str. Rev.1]
gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae
5K33]
gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 3 str. Ether]
gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti
M490/95/1]
gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94]
gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv.
9 str. C68]
gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
63/9]
gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99]
gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1]
gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94]
gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1]
gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33]
gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99]
gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1]
gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1
str. 16M]
gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis
1330]
gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella
abortus bv. 1 str. 9-941]
gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping
protein [Brucella melitensis biovar Abortus 2308]
gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis
ATCC 25840]
gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365]
gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19]
gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str.
Cudo]
gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457]
gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM
4915]
gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94]
gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1]
gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1]
gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33]
gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99]
gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1]
gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
Ether]
gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis
M28]
gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis
M5-90]
Length = 137
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 87 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137
>gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea
phototrophica DFL-43]
gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea
phototrophica DFL-43]
Length = 133
Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 81/110 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL LL+ Q+K+QDPT+PM ++EQ+AQLA FSQ+EQ++Q N L+ELL+S++L
Sbjct: 23 KATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATFSQVEQTIQTNKHLEELLQSSSL 82
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+QA S IG+ IT+ D ++SG + +QV S GL A+ D T++ + G+ I
Sbjct: 83 SQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLEDGTKVVVGPGVSI 132
>gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti
MAFF303099]
gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium
loti MAFF303099]
Length = 135
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 88/115 (76%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+KS SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+EQSVQ N+ L +++
Sbjct: 17 TKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQVEQSVQSNTKLDQIM 76
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+S+ L+QA + IG++IT+ADG +G+V ++ ++S+GL A+ D T++P+ G+ I
Sbjct: 77 QSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTKVPVGPGVSI 131
>gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 144
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 82/112 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 24 KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASSSL 83
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI +++
Sbjct: 84 TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135
>gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13]
gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13]
gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF
2653]
gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1]
gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13]
gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1]
gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF
2653]
Length = 137
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +T+ADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 87 TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137
>gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2]
gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2]
Length = 137
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +T+ADGSI+GVV ++ + S+G+ A D + I G+RIS
Sbjct: 87 TQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137
>gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum
intermedium LMG 3301]
gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum
intermedium LMG 3301]
Length = 136
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 84/114 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ +
Sbjct: 23 AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+L QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS
Sbjct: 83 TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136
>gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum
anthropi ATCC 49188]
gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188]
Length = 136
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L
Sbjct: 26 KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS
Sbjct: 86 TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136
>gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum
WSM2075]
gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum
WSM2075]
Length = 135
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 80/103 (77%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86
+FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+EQSVQ N+ L+++++S+ L+QA + I
Sbjct: 29 SFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQVEQSVQTNTKLEQIMQSSALSQADAII 88
Query: 87 GKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
G+ IT+ADG +G V ++ ++S GL A+ D T++P+ G+ I
Sbjct: 89 GRTITSADGKTTGTVASVTLASNGLIAVLQDGTQVPVGAGVSI 131
>gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
Length = 134
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 78/108 (72%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL +L S +L QA
Sbjct: 27 LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S+IGK +T+ADGS+SGVV ++ + S+ TA D + I +TTGI +S
Sbjct: 87 QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134
>gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp.
BNC1]
gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1]
Length = 129
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M ++T V T Q + + +T+ +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+
Sbjct: 1 MNVST-VTSTPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQMNS L+++L ++ L+QA IG+ IT+ADGS++G+V +++ S G+ A E
Sbjct: 60 EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119
Query: 121 IPITTGIRIS 130
+ + G+ IS
Sbjct: 120 VVVGPGVVIS 129
>gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT
894]
Length = 112
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 73/97 (75%)
Query: 35 QIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD 94
Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L LL S++L QASSY+GK + +AD
Sbjct: 2 QMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESAD 61
Query: 95 GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
G++ G + +++V S G+ A T D I + GI +++
Sbjct: 62 GTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98
>gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 135
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 91/129 (70%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ T + + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3 VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G V +++++S GL A+ + TE
Sbjct: 63 EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122
Query: 121 IPITTGIRI 129
+ + G+ +
Sbjct: 123 VAVGPGVSV 131
>gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium
medicae WSM419]
gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419]
Length = 138
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 82/117 (70%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N L+
Sbjct: 21 ESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKNLES 80
Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
LL+ +L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+++
Sbjct: 81 LLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGVKV 137
>gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp.
H13-3]
gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp.
H13-3]
Length = 156
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 80/117 (68%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S KS +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L+ +L
Sbjct: 21 SNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML 80
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++ L +AS +GK + +AD ++GVV ++V S G+ AIT ++ + G+ SN
Sbjct: 81 QAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVTFSN 137
>gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium
tumefaciens str. C58]
gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58]
Length = 157
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 80/117 (68%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S K+ +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L+ +L
Sbjct: 21 SSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHLKSML 80
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++ L +AS +GK + +AD ++GVV +QV S G+ A+T ++ + G+ SN
Sbjct: 81 QAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFSN 137
>gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp.
4-46]
gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
Length = 142
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 80/114 (70%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
SK+ +L DAFL+LL+TQ+K+QDPT+PM ++ + +LA FS++EQS +MN+ L LL S
Sbjct: 29 SKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDALLSS 88
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
N L+QA S IG+ T+ DG I+GVV ++++++ G A D ++ + G+ +S
Sbjct: 89 NYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142
>gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium
meliloti 1021]
gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti]
gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium
meliloti 1021]
gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 77/109 (70%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N L+ LL+
Sbjct: 27 SAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKNLESLLQRTA 86
Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+
Sbjct: 87 LSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGV 135
>gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56]
Length = 159
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 85/115 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S
Sbjct: 35 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++
Sbjct: 95 SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149
>gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli
IE4771]
Length = 146
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 83/112 (74%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSSSL 82
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++
Sbjct: 83 TQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134
>gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium
extorquens PA1]
gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium
chloromethanicum CM4]
gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
Length = 138
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 73/105 (69%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA +
Sbjct: 34 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 93
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+++T+ADG ISG V +++V+ G+ A D E+ + +GI IS
Sbjct: 94 IGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
Length = 158
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 73/103 (70%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++ ++QAS YIG
Sbjct: 33 FLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQASDYIG 92
Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
K I +ADG+ +G + + V S G+ A T +I + G+ ++
Sbjct: 93 KEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135
>gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium
radiotolerans JCM 2831]
gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
Length = 139
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 69/91 (75%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L LL S+ L+QA
Sbjct: 32 LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
+G +T+AD +++G V +++V+S GL A
Sbjct: 92 GGLVGHTVTSADKTLTGTVVSVEVASNGLLA 122
>gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
Length = 136
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 74/105 (70%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
+AFL+LL+T+++HQDP +PM ++ V QLA F+ +EQ++Q NS L L +++ L+QASS
Sbjct: 32 NAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQTNSLLASLNENSALSQASSL 91
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ +++ADG SGVV ++ + G+ A+ D ++ + G+ IS
Sbjct: 92 IGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGPGVTIS 136
>gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis]
gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis]
Length = 228
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 73/103 (70%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++ ++QAS YIG
Sbjct: 33 FLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQASDYIG 92
Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
K I +ADG +G + + V + G+ A T +I I G+ I+
Sbjct: 93 KQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135
>gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium
populi BJ001]
gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001]
Length = 138
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA +
Sbjct: 34 DTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLNQADAI 93
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG++IT+ADG +G V +++V+ G+ A D E+ + +GI IS
Sbjct: 94 IGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium
extorquens DM4]
gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein
[Methylobacterium extorquens DM4]
Length = 138
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA +
Sbjct: 34 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 93
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS
Sbjct: 94 IGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein
[Methylobacterium extorquens AM1]
gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein
[Methylobacterium extorquens AM1]
Length = 135
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 72/105 (68%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L QA +
Sbjct: 31 DTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQADAI 90
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS
Sbjct: 91 IGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135
>gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 136
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 77/106 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TL + FLKL++ Q+++QDP P +++ ++Q+A FS +EQ + N+ L +LL ++N++Q
Sbjct: 26 TLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGINTNAKLDQLLVNSNISQ 85
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
AS+ IG ++T+ADGS+SG+V ++++ STG TAI + E+ I G+
Sbjct: 86 ASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRIDQGV 131
>gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis
S4]
gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4]
Length = 151
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 76/106 (71%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++ L +A
Sbjct: 44 NSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRAGDI 103
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+GK +T++DG +GVV+ ++V+ +T T + + TG+ S+
Sbjct: 104 VGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149
>gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 147
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 83/112 (74%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 24 KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLSSSSL 83
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ G + +++V S G+ A T + +I + GI +++
Sbjct: 84 TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILVQAGITVAD 135
>gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 141
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 73/110 (66%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
T+ +FL+LL+ ++K+QDPT P ++ ++QLA FS +EQ VQ NS L LL +++L Q
Sbjct: 32 TVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASSLGQ 91
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
A + IGK IT+ADGSISG V ++ VSS TA + ++ + GI I +
Sbjct: 92 AETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141
>gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata
IAM 12614]
gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata
IAM 12614]
Length = 131
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 85/127 (66%), Gaps = 5/127 (3%)
Query: 7 VNPTQQEFSKSKSKK--TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
V+ T+ S + ++K T+ D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+
Sbjct: 7 VSATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSI 66
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPI 123
Q N+ L+ LL + + Q IG+ +T+A+G+ +GVV ++V S G T + +DN + I +
Sbjct: 67 QTNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDG-TVLALDNGKGILL 124
Query: 124 TTGIRIS 130
G+ IS
Sbjct: 125 GPGVTIS 131
>gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
Length = 134
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
T+ +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + + Q
Sbjct: 27 TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRIS 130
IG+ +T+++G+ +GVV +++ S G T + +DN + + + G+ IS
Sbjct: 87 VDDLIGRTVTDSNGT-TGVVEKVEIYSDG-TILGLDNGKGVLLGPGVSIS 134
>gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
Length = 190
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 4/113 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ+ + +KK D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN L
Sbjct: 19 QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78
Query: 71 QELLKSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTE 120
+++L + ++ A Y+GK I + DG+ I G V ++ + S G+ A T+DN E
Sbjct: 79 EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVA-TLDNGE 130
>gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73]
gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae
73]
Length = 169
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 5/115 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+KK D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN TL ++L + +
Sbjct: 25 AKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMNETLTQMLSNGS 84
Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129
+ A Y+GK I D I G V +I + S G+ A T+DN E + I G+++
Sbjct: 85 INGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138
>gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3]
Length = 169
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+KK D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ+++MN TL ++L + +
Sbjct: 25 AKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAIKMNETLAQMLSNGS 84
Query: 79 LAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129
+ A Y+GK I T+ G+ I G V +I + S G+ A T+DN E + I G+++
Sbjct: 85 INGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138
>gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C]
Length = 170
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L +
Sbjct: 26 AKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSNGL 85
Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129
+ A Y+GK I D I G V +I + S G+ A T+DN E + I G+++
Sbjct: 86 INGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 139
>gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130]
gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130]
Length = 131
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K + D+FLKLL+ ++++QDPT+PM++SE VAQLA FS +EQS+Q N+ L LL N L
Sbjct: 23 KAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGVEQSIQTNTKLDALLAGNVL 82
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
QA + IG+ +T D ++G+V+++ + S + + D + ++
Sbjct: 83 GQAGTMIGRTVTAGD--VTGLVDSVAIESGSASLVLDDGRRVALS 125
>gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC
BAA-1498]
Length = 169
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L +
Sbjct: 25 AKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSNGL 84
Query: 79 LAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRI 129
+ A Y+GK I D I G V +I + S G+ A T+DN E + I G+++
Sbjct: 85 INGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVA-TLDNGEKVVIGPGVKV 138
>gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
17100]
Length = 100
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+L+ Q+++QDPT+P ++ ++QLA FS +EQ V NS L LL ++Q +S IGK +
Sbjct: 1 MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60
Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
T+ADG+ISG + +I++SS+G A D + I + +G+ IS
Sbjct: 61 TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100
>gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
SI85-9A1]
gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
SI85-9A1]
Length = 134
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T Q S + K + DAFLKLL+ ++ +QDP P ++E VAQ A FS +EQ++
Sbjct: 9 TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
Q N L ++ + L QA+S IG+ T+ADG++SG V A++ + + AI +P+
Sbjct: 69 QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128
Query: 125 TGIRI 129
+G +
Sbjct: 129 SGTTV 133
>gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
Length = 131
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TL +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + + Q
Sbjct: 24 TLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMSFGQ 83
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGIRIS 130
IG+ T+A G+ +GVV +++V S G T + +DN + I + G++IS
Sbjct: 84 VDDLIGRTATDAIGT-TGVVTSVEVYSDG-TLLGLDNGKGILLGPGVKIS 131
>gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168]
gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168]
Length = 142
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +DAF KLLITQ++HQDP +PM+ E +AQ+A FS +EQ MN L ++ +L+Q
Sbjct: 31 LDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMANMNENLSTFMRMESLSQG 90
Query: 83 SSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
++ IG+N+ D +SG V + S L A ++ +IP+ T IS
Sbjct: 91 AALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKIPVDTITSIS 142
>gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1]
Length = 160
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
++KK D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N L ++L +
Sbjct: 26 EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85
Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
++ A Y+GK I +ADG I G V +I + + G+ A +N ++ I GI +
Sbjct: 86 SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140
>gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium
caulinodans ORS 571]
gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium
caulinodans ORS 571]
Length = 138
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL+LL+ Q+K+QDPT+PM ++ ++QLA FSQ+EQ N L LL ++ L A + IG
Sbjct: 34 FLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSADAAIG 93
Query: 88 KNITNADGSISGVVNAIQVSSTGLTAITV-DNTEIPITTGIRISN 131
K +T+ADG++SG V ++ + S G T+ D +++ + + + IS
Sbjct: 94 KTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSISG 138
>gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella
silvestris BL2]
gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2]
Length = 135
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 5/104 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL+LLIT++K+QDPT P ++ ++QLA FS +EQ V+ NS L LL + QA + IG
Sbjct: 34 FLQLLITELKNQDPTSPTDPTQYMSQLASFSSVEQQVKTNSALDALLAT----QAGALIG 89
Query: 88 KNITNADGSISGVVNAIQVSSTG-LTAITVDNTEIPITTGIRIS 130
K T+ADG ISGV+ ++ S+ G +TA + + I + +G+ IS
Sbjct: 90 KTATSADGKISGVIASVTTSAGGDVTATLKNGSAITLGSGVTIS 133
>gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
HTCC2506]
gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
HTCC2506]
Length = 136
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 66/105 (62%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
DAFL+LL+ Q+K+QDP P +++E +AQ A F+ +EQS+Q N+ L+ ++ + L QA +
Sbjct: 32 DAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQSIQTNTRLESMMTVSALTQADAL 91
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ +T+ DG+ G V +I+ G+ A I + G+ ++
Sbjct: 92 IGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIMLGDGVSVA 136
>gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
574]
gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
574]
Length = 138
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S K KTL +DAFL++++ Q+K+QDPT PM + + Q+A F+ +EQ +NS ++L
Sbjct: 17 SPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFTTLEQITNLNSNFEKLY 76
Query: 75 KSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVD 117
L SS IG +T N D +ISG V + + +TG+ D
Sbjct: 77 SLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATGVKIWVAD 121
>gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus
donghaensis MPA1U2]
gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus
donghaensis MPA1U2]
Length = 143
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K + LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F+ +EQ +N T+ + +
Sbjct: 18 TKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQFTSLEQLTNLNKTMTQFV 77
Query: 75 K---SNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTA-ITVDNTEIPITTGIR 128
S++LA + IG ++ + GS G+V A+ + L A + +T++PI + I
Sbjct: 78 SNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELLAELEGSDTKVPIASIIH 137
Query: 129 I 129
I
Sbjct: 138 I 138
>gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium
japonicum USDA 110]
gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110]
Length = 140
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL+LL+ ++K+QDPT PM S+ ++Q A S +EQ++Q N+ L LL S +L+QA IG
Sbjct: 33 FLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQADGLIG 92
Query: 88 KNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
K + T+A G+ SG V +I ++S G A + T++ + G+ IS
Sbjct: 93 KTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138
>gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
Length = 152
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +AFL L + +K QDPT+P+ +E + QLA FS +EQS + N+ L +L+ +++ QA
Sbjct: 29 LDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQSTKTNTHLTAMLQQHSINQA 88
Query: 83 SSYIGK--NITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
++ IG + NADG + +GV+ ++Q+ + G A D T++ + GI IS
Sbjct: 89 NNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGTKVALVPGIEIS 140
>gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 131
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 14/130 (10%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADGSISGVVNAIQV--SSTGLTA 113
+EQ MNS++ N +A + IGKN IT+ +G+ V+ + V G
Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVDVVYKQNGEYF 113
Query: 114 ITVDNTEIPI 123
+ V+ +IP+
Sbjct: 114 LEVNGIDIPL 123
>gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 131
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 16/131 (12%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP +PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS+ N +A + IGKN IT+ +G +++G V+ + G
Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVDVV-YKQNGEY 112
Query: 113 AITVDNTEIPI 123
+ V+ ++P+
Sbjct: 113 FLQVNGIDVPV 123
>gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
str. Hildenborough]
gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
str. Hildenborough]
gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1]
Length = 265
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 3 INTEVNPTQQEFS---KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N + + EF K LG+DAFL+LL+TQ+KHQDP PM E VAQLA F+
Sbjct: 5 VNNILGQAENEFQSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTS 64
Query: 60 MEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI 104
+EQ + +N +++ E K + A SYIGK++ + IS + + +
Sbjct: 65 LEQLMGINTGVTSMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGV 112
>gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
Length = 149
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 8/92 (8%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ MN QE K N
Sbjct: 35 KVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMN---QEFAKMN 91
Query: 78 NL---AQASSYIGK--NITNADGSISGVVNAI 104
++ +QA IGK +IT D +GVV A+
Sbjct: 92 SMLVSSQAVGTIGKTVDITLGDTKTTGVVEAV 123
>gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii
KSM-K16]
gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus
clausii KSM-K16]
Length = 144
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
LGQDAFLKLLITQ+++QDP+ P++ E +AQLA FSQ+EQ ++NST++ + KS L
Sbjct: 24 LGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLEQLTKLNSTMEYMYYEQKSQQL 83
Query: 80 AQASSYIGKNIT--NADGSIS-GVVNAIQVSSTGLTAITVDN 118
S IGK++ N + V ++ S +G + +D+
Sbjct: 84 MALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQIDD 125
>gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
200]
gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
200]
Length = 131
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 16/131 (12%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS+ N +A + IGKN IT+ +G +++G V+ + G
Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSQTVTGKVDVV-YKQNGEY 112
Query: 113 AITVDNTEIPI 123
+ V+ ++P+
Sbjct: 113 FLQVNGIDVPV 123
>gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
20745]
gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
20745]
Length = 150
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+ FL LL Q+++QDP PM+ +E +AQLA + +EQ QMN TL L++ + LAQ
Sbjct: 28 LGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSLEQMQQMNETLSTLVEMSVLAQT 87
Query: 83 SSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+S IG+++T D G I GVV+ + + G + V T +P+
Sbjct: 88 ASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNVGGTAVPL 131
>gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
Length = 149
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K+++ L +DAFL++LITQ+++QDP PM+ E +AQ+A F+ +EQ MN+ LQ+ L
Sbjct: 19 KARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQKFLD 78
Query: 76 S--NNLAQASSYIGKNI------TNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIP 122
S N S IGK + N DGS + GVV +++ + G ++ +D+
Sbjct: 79 SHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQN-GSASLVIDDQHTV 137
Query: 123 ITTGIRI 129
T I++
Sbjct: 138 STKDIQV 144
>gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
Length = 146
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ M+S +L N +A
Sbjct: 37 LGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANMLNSNEA 96
Query: 83 SSYIGKNI-TNA-DGSISGVVNAI 104
S +GKN+ NA D ++SGVV ++
Sbjct: 97 VSLLGKNVELNAGDAAVSGVVESV 120
>gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578]
Length = 145
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L
Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92
Query: 80 AQASSYIGKN--ITNADGSISGVVNAIQ 105
+QA S +GK I N D ISGVV ++
Sbjct: 93 SQAFSLLGKTVVIKNGDEEISGVVEEVR 120
>gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228]
Length = 168
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LGQDAF KLLITQ+++QDP PM+ E V+Q+A FS +E++ ++ S L++ L SN +
Sbjct: 36 LGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKTEKLYSLLEDKLSSNQVINN 95
Query: 83 SSYIGKNIT-NADG----SISGVVNAIQVSSTGLTAITVDNTEIPI 123
S IGK IT N D + GVV +I+ + A + E+ I
Sbjct: 96 SHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNGLEVDI 141
>gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum
subsp. pallidum SS14]
gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum]
gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum
subsp. pallidum SS14]
gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 153
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+E++ V Q E +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS +
Sbjct: 19 LEMDVRVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAI 104
EQ M++ +++L +A +GK +T AD ++ G+++A+
Sbjct: 79 EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAV 124
>gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
3_1_syn3]
gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
3_1_syn3]
Length = 282
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 13/104 (12%)
Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+N T EF+ + SK+ + +D+F+ LL+TQ K+QDP PM+ E +AQLA FS +EQ
Sbjct: 8 LNQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSSLEQL 67
Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSISGVVNAI 104
+ +N++++ L + N + A+SYIGKN+ S+SG NAI
Sbjct: 68 MNLNTSMEGLTDATNNQQMINATSYIGKNV-----SVSG--NAI 104
>gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 137
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 8 NP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
NP T QE + + + ++AFLKLL Q+K+QDP PM +E V QLA+FS +EQ +
Sbjct: 10 NPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFSALEQVIN 69
Query: 66 MNSTLQEL----LKSNNLAQASSYIGKNITNADGS 96
+N+TL++L + SN L S+ IGK I DG+
Sbjct: 70 INNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT 104
>gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 284
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+N T EF+ + SK+ L +D+F+ LL+TQ K+QDP PM+ E +AQ+A FS +EQ
Sbjct: 8 LNRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSSLEQL 67
Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSISGVVNAIQVSST 109
+ +N++++ L + N + A+SYIGK +T + +I V + ST
Sbjct: 68 MNLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTIGKVTDETTKEST 116
>gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 131
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 14/130 (10%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ S LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADGSISGVVNAIQV--SSTGLTA 113
+EQ MNS++ N +A + IGKN IT+ +G+ V+ + V G
Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVDVVYKQNGEYF 113
Query: 114 ITVDNTEIPI 123
+ V+ +IP+
Sbjct: 114 LEVNGIDIPL 123
>gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 134
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Query: 5 TEVNPTQQEFSKSKS-----KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
EVN Q S + KK LG+D FLK+LI Q+ HQDP +P+K + +AQ+A FS
Sbjct: 2 AEVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSA 61
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116
+EQ + + ++ L K ++A A +Y+G+ + D +GVV +++ +T
Sbjct: 62 LEQQMNIAKGIEGLSKL-SMASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLA 120
Query: 117 DNTEIPI 123
D IP+
Sbjct: 121 DGNSIPM 127
>gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
Length = 186
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 11/125 (8%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L +
Sbjct: 22 TKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM- 80
Query: 75 KSNNLAQASSYIGKNIT----NADGSI----SGVVNAIQVSSTGLTAITVDNTEIPITTG 126
S +L ASS IGK I+ DGS SG+V++I V G+ V +E+ +
Sbjct: 81 -SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESEVSLDQI 138
Query: 127 IRISN 131
++I N
Sbjct: 139 VKIEN 143
>gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
Length = 138
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+G+D FL+L +TQ+K+Q+P EPM E +AQ A F+ MEQ MN L++ L L Q
Sbjct: 27 MGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQMKNMNQNLEKFLGMQKLTQV 86
Query: 83 SSYIGKNITNADGS----ISGVVNAIQVSSTG 110
SS IGK + D I+G V ++++ +G
Sbjct: 87 SSLIGKEVKALDSDSGEEITGEVEKVKMADSG 118
>gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
108]
gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
108]
Length = 164
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 13/123 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V+ + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118
+N ++ ELLK A S IG+ + +A I G V++I++ + + + V+
Sbjct: 69 QNLNESV-ELLK------AQSMIGRYVVATSPQDASKLIEGRVDSIKIDGSKVY-LKVNG 120
Query: 119 TEI 121
TE+
Sbjct: 121 TEV 123
>gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
Length = 186
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 11/125 (8%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L +
Sbjct: 22 TKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM- 80
Query: 75 KSNNLAQASSYIGKNIT----NADGSI----SGVVNAIQVSSTGLTAITVDNTEIPITTG 126
S +L ASS IGK I+ DGS SG+V++I V G+ V E+ +
Sbjct: 81 -SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRD-GVHYAKVGENEVSLDQI 138
Query: 127 IRISN 131
++I N
Sbjct: 139 VKIEN 143
>gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453]
gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453]
Length = 188
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 12/125 (9%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L +
Sbjct: 23 KNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM-- 80
Query: 76 SNNLAQASSYIGKNIT----NADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
S +L ASS IGK I+ DGS SG+V++I V G+ + +E+ +
Sbjct: 81 SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSIIVRD-GIHYAKIGESEVALDQI 139
Query: 127 IRISN 131
++I N
Sbjct: 140 LKIEN 144
>gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 164
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 13/122 (10%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T V + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 10 TNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQ 69
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI--TNADGS---ISGVVNAIQVSSTGLTAITVDNT 119
+N + ELLK+ N+ IG+ I TN S I G V +++V + + + V+NT
Sbjct: 70 NLNESF-ELLKAQNM------IGRYIVATNPQDSSKQIEGRVESVKVDGSKVY-LKVNNT 121
Query: 120 EI 121
EI
Sbjct: 122 EI 123
>gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
Length = 242
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K K LGQD FLKLL+TQ+++QDP PM+ E +AQ+A FS +EQ Q+NS ++ ++ +N
Sbjct: 24 KHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLEQLTQVNSNIKTMIDNN 83
Query: 78 ---NLAQASSYIGKNITNADGSIS 98
+ A +IGK + SIS
Sbjct: 84 AQDQMVSAVGFIGKEVKAEGYSIS 107
>gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.]
Length = 113
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------LKS 76
+G+D FL LL+TQ+K+QDP PM+ E AQLA FS +EQ MN+TL + K
Sbjct: 1 MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60
Query: 77 NNLAQASSYIGKNITNAD---GSISGVV--NAIQVSSTGLTAITVDN 118
+NL YIGKNI +D G ++GV N I G I DN
Sbjct: 61 DNLL---DYIGKNIKTSDDETGEVTGVTYQNGIGYLMVGENKILPDN 104
>gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia
stuttgartiensis]
Length = 137
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-------LKSNN 78
D+FL L TQ+++QDP +P SE ++QLA F+ +EQ+ Q L +L L+ +
Sbjct: 16 DSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTASLQLDQ 75
Query: 79 LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ AS +IGK IT +D G SGVV +++ G + +D + I+ I++
Sbjct: 76 IGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQV 130
>gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421]
gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis]
gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421]
Length = 163
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+E++ Q E K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ +
Sbjct: 26 LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85
Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI--SGVVNA 103
E QM + Q K NNL ++A + +GK + DGSI SGV+ A
Sbjct: 86 E---QMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA 130
>gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
12680]
Length = 171
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 14/114 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--------- 73
LG+D F KLLIT++K+QDP EPMK E +AQ+A FS +EQ MN+ LQ L
Sbjct: 24 LGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSSLEQMYNMNTNLQSLSTALNSYVS 83
Query: 74 -LKSN-NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
L SN + +A + +G+ I A G+ G V +I V G+ +TV+ ++ +
Sbjct: 84 TLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-VLKDGVPYLTVNGEQVSL 136
>gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 142
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
VN + K + K LG+D FLKLLITQ+ HQDP EP+ +E +AQ+A FS +EQ +
Sbjct: 9 VNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFSTLEQMTNV 68
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNAD 94
++ LL L A SYIGK + D
Sbjct: 69 AKGVESLLSVTKL-NAQSYIGKEVIYYD 95
>gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
Length = 145
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L
Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92
Query: 80 AQASSYIGKN--ITNADGSISGVVNAIQ 105
+QA S +GK I N ISGVV ++
Sbjct: 93 SQAFSLLGKTVVIKNGGQEISGVVEEVR 120
>gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
Length = 185
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSK---KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
ME+N + N + + K+K KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F
Sbjct: 1 MEVN-QTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMF 59
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+ +EQ +N+ ++ L L ASS IGK +
Sbjct: 60 TTLEQMTNLNTNMERLYHLQELNHASSLIGKRV 92
>gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp.
2_A_57_CT2]
gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp.
2_A_57_CT2]
Length = 150
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 59/83 (71%), Gaps = 7/83 (8%)
Query: 16 KSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+S+++KT LG+D FLK+L+TQ+++QDP PM+ + +AQ+A FS +EQ MN T++
Sbjct: 15 QSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQMTNMNKTME 74
Query: 72 ELL---KSNNLAQASSYIGKNIT 91
+L+ + N L ++++GKN+T
Sbjct: 75 KLVAFQEQNQLMTYNNFLGKNVT 97
>gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 279
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
FS+ K LG++ FLKLL+TQ K+QDP PM+ E +AQLA FS +EQ + N ++ L
Sbjct: 16 FSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQMSTNEKMESL 75
Query: 74 LK---SNNLAQASSYIGKNI 90
L + A+S+IGK +
Sbjct: 76 LNLQTQQQMISAASFIGKEV 95
>gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
Length = 247
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
SK +LGQ FL LL+ Q+ HQDP PM+ ++ +QLA FS +EQ ++N +Q L +
Sbjct: 26 SKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQSLNTVMG 85
Query: 76 SNNLAQASSYIGKNI 90
++L A+SYIGK+I
Sbjct: 86 KSDLLSAASYIGKDI 100
>gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus
halodurans C-125]
gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125]
Length = 171
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79
LG+D FL++LI Q+++QDP PM E +AQ+A FS +EQ MNS +Q+ +K S L
Sbjct: 26 LGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAIQQFVKQQTSQTL 85
Query: 80 AQASSYIGKNIT 91
Q S IGK +T
Sbjct: 86 VQHSELIGKRVT 97
>gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S]
gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S]
Length = 147
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI-SGVVNAIQVSS 108
+ + +GK I + DG I G V +I+ +
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEIVKGRVTSIKTGA 124
>gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii
PKo]
gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo]
Length = 147
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI-SGVVNAIQ 105
+ + +GK I + DG I G V +I+
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEIVEGRVTSIK 121
>gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 135
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S++K L +DAFLK+ + Q+++QDP P +E +A+LA F +EQ + L +LL
Sbjct: 18 AASQTKLNLDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQLTNLTDALTKLL 77
Query: 75 KSNNLAQASSYIGKNI---TNADGSISGVVNAIQVS 107
+ AQA++ IGK + T A+ + GVV+A++ S
Sbjct: 78 QFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWS 113
>gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1]
gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40]
Length = 147
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG I
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112
>gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116]
gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116]
Length = 147
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG I
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112
>gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi
B31]
gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi
80a]
gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi]
gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi]
gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31]
gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
Length = 147
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG I
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112
>gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus
pseudofirmus OF4]
gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus
pseudofirmus OF4]
Length = 169
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79
LG+D FLKLLITQ+++QDP+ PM E +AQ+A FS +EQ MN+T+Q+ + S +L
Sbjct: 25 LGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNTIQKFVDVQTSQSL 84
Query: 80 AQASSYIGKNI 90
Q S IGK +
Sbjct: 85 VQFSELIGKEV 95
>gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1]
gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1]
Length = 147
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSLE 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG I
Sbjct: 92 IRKDLDLLGKVIKFQHGDGEI 112
>gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
Length = 159
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME++T +N +Q F + K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+
Sbjct: 29 MEVDT-IN--KQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTS 85
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNA 103
+EQ MN + L + + A + +GK +I + G++SG + A
Sbjct: 86 LEQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITA 131
>gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 140
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81
LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN T+ + +++ +
Sbjct: 24 LGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNKTMTQFVENQDPFTS 83
Query: 82 ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121
++GK ++ DG +G V++++ S I D TEI
Sbjct: 84 YVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDDGTEI 127
>gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
771]
Length = 134
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S + S L ++AFLKL I Q+K+QDP P + + Q+A FS MEQ + +N+++ +L+
Sbjct: 17 STNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQLMNLNTSITQLI 76
Query: 75 KSNNLAQASSYIGKN--ITNADGS-ISGVVNAIQV 106
NL +A+S +G+ +T ADG+ ISG V +Q+
Sbjct: 77 DLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQI 111
>gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 164
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 13/115 (11%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N +
Sbjct: 17 QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESF- 75
Query: 72 ELLKSNNLAQASSYIGKNI--TNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121
ELLK A S IG+ + TN S I G V +++V + + + V+NTEI
Sbjct: 76 ELLK------AQSMIGRYVVATNPQDSSKQIEGRVESVKVDGSKVY-LKVNNTEI 123
>gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii
PBi]
gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi]
Length = 147
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
SK LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S
Sbjct: 32 SKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSLG 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG +
Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112
>gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1]
gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1]
Length = 155
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ + K TL Q+ FLKLL Q + QDP PM+ +E +AQ+A F+ ++QS + + +++
Sbjct: 25 TPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQMKQFS 84
Query: 75 KSNNLAQASSYIGKNITNAD---GSISGVVNAIQVS 107
+ A A+SYIG+ +T AD + +GVV+ ++++
Sbjct: 85 TMQDAATANSYIGRQVTFADENGATATGVVSGVEIT 120
>gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
Length = 170
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 13/110 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N++ E LK
Sbjct: 22 SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSF-EFLK- 79
Query: 77 NNLAQASSYIGKNI--TNA-DGS--ISGVVNAIQVSSTGLTAITVDNTEI 121
A S IG+ + TNA DG+ I G V++I+V + + + V++TE+
Sbjct: 80 -----AQSMIGRYVIATNAQDGARQIEGRVDSIRVDGSKVF-LKVNDTEV 123
>gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
Length = 163
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ + +K TLG+D FLK+L+TQ+++QDP++P++ + +AQ+A FS +EQ + M+ +
Sbjct: 21 QKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLMNMSEEMT 80
Query: 72 ELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAI------QVSSTGLTAITVDN 118
+L + NL ASS IG + T + SG+V AI Q + G + VD+
Sbjct: 81 KLRQ--NLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIKDGVQYAKVGDKTVKVDD 138
>gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus
SAFR-032]
gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus
SAFR-032]
Length = 148
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 12/108 (11%)
Query: 10 TQQEFSKSKSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
TQ + S KKT LG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ MN
Sbjct: 12 TQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQTNMN 71
Query: 68 STLQEL--LKSNNLAQAS------SYIGKNITNA--DGSISGVVNAIQ 105
++ +L L S +A +IGK ++ D ISG V +++
Sbjct: 72 DSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVK 119
>gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
Length = 140
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S + L+++ N L
Sbjct: 26 LGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQTQNNQAL 85
Query: 80 AQASSYIGKNIT--NADGSISGVVNAI 104
+ S +IGKN+ + + SGVV ++
Sbjct: 86 LRYSEWIGKNVYWQEEENTKSGVVKSV 112
>gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
Length = 147
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSLE 91
Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQ 105
+ + +GK I G+ + G V +I+
Sbjct: 92 IRKDLDLLGKVIKFQHGNGEIVEGRVTSIK 121
>gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1]
gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1]
Length = 146
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ MN + + L
Sbjct: 35 LGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENL 85
>gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 180
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 13/126 (10%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N Q S + K L ++AFLKLL+T++K+QDP EP+K E ++Q+A FS +EQ +N
Sbjct: 16 NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75
Query: 68 STLQELLKSNN--------LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAIT 115
S+ +L + N + Q+S+ +G+ + D S +G+++++ V G+
Sbjct: 76 SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSV-VFREGIPYYV 134
Query: 116 VDNTEI 121
+D+ EI
Sbjct: 135 IDDKEI 140
>gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
Length = 148
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LK 75
K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ MN ++ +L L
Sbjct: 22 KKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQTNMNDSITKLNQLM 81
Query: 76 SNNLAQAS------SYIGKNITNA--DGSISGVVNAIQ 105
S +A +IGK ++ D ISG V +++
Sbjct: 82 STFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVK 119
>gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
Length = 223
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDA-----FLKLLITQIKHQDPTEPMKASEQVAQLA 55
M I++ + P K +G D+ F+KL ITQ+++QDP EPM + E +QLA
Sbjct: 1 MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60
Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGV 100
FS ME +++M+ +++LL KS N Q IGKNI A IS V
Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEISMV 108
>gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
Length = 205
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+K LGQD F KLL TQ+ QDP EPM+ + +AQ+A FS++E + + + +
Sbjct: 31 QKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMTSNLTKSFDNFNSTQQF 90
Query: 80 AQASSYIGKNITNADGSISGVVNAIQ 105
A A YIGK ++ + G + G V +++
Sbjct: 91 ASAHGYIGKTVSLSSGEV-GEVTSVE 115
>gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
Length = 161
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 14/123 (11%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K +G+DAFLKLLITQ+++QDP +PM+ E ++Q+A FS +EQ MN + + L
Sbjct: 23 AKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMNENMNKFL 82
Query: 75 KSNNLAQASSY---IGKNI------TNADG-----SISGVVNAIQVSSTGLTAITVDNTE 120
+S +Q S+ IGK I N +G ++S +V A++ T +T E
Sbjct: 83 ESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATILTESGKE 142
Query: 121 IPI 123
+ +
Sbjct: 143 LSV 145
>gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 140
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I E++ T E ++S+ LGQ+ F+KL +T++ QDP EP+ E +AQ+A F+ +EQ
Sbjct: 6 IGNELSSTTSELAQSR----LGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQ 61
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNT 119
+ N L+ N +Q+ +G+ + G+ G V AI SSTG ++V T
Sbjct: 62 TRITNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTG-PVLSVKRT 120
Query: 120 EIPITTGIRIS 130
+ + T +R+S
Sbjct: 121 DGTVLTDVRLS 131
>gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae
91E135]
gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae
91E135]
Length = 144
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 12 QEFSKSKSKK-----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+E S SK ++ LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M
Sbjct: 17 KEISNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNM 76
Query: 67 NSTLQELLKSNNLAQASSYIGK--NITNADGSI 97
+ + + L + + +GK + DG I
Sbjct: 77 SKSFESLSSVLGINKDLDLLGKIVEFEHVDGEI 109
>gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas
palustris BisB18]
gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
Length = 135
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+G + FL+LLI Q+++QDPT P S+ ++Q A S +EQ++Q N L LL ++ L+QA
Sbjct: 25 IGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSVEQAIQTNLKLDALLSTSALSQA 84
Query: 83 SSYIGK--NITNADG-SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ + T DG S +G + A+ + G A + ++ + GI IS
Sbjct: 85 EGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDNGVQVQLGPGITIS 135
>gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2143]
gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2143]
Length = 224
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 67/110 (60%), Gaps = 12/110 (10%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
K+ LGQD FL+L++TQ+++Q+P +P SE VAQLA FS +E ++N+T++ +S
Sbjct: 26 KQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLDKLNNTMEGFVGSFQS 85
Query: 77 NNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDN 118
N QAS+ +G+++ ADG ++G + Q S+ L+ I D+
Sbjct: 86 NQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQ-STDDLSVIVYDS 134
>gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
Length = 264
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT-AITVDNTEIPI 123
+ + S +GK++ A G V + + TG+ A+ DN I +
Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITV 143
>gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr]
gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr]
Length = 147
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + + L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFERLSSSLG 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG +
Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112
>gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus
amyloliquefaciens FZB42]
gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42]
Length = 146
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN+T+ + +++ +
Sbjct: 27 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86
Query: 79 -LAQASSYIGKNITNAD 94
++IGKN+T +D
Sbjct: 87 PFTMYVNWIGKNVTFSD 103
>gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04]
gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04]
Length = 147
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S
Sbjct: 32 NKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSLG 91
Query: 79 LAQASSYIGKNIT--NADGSI 97
+ + +GK I + DG +
Sbjct: 92 IRRDLDLLGKVIKFQHGDGEV 112
>gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
Length = 250
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN- 67
PT+ E S L QDAFL +L+ Q+ HQDP PM+ +E +QLA FS +EQ +N
Sbjct: 24 PTEHETS-------LDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNIND 76
Query: 68 --STLQELLKSNNLAQASSYIGKNI 90
STL E + +++ A S+IGK +
Sbjct: 77 GISTLNETMSQSDILTAVSFIGKEV 101
>gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus
flavithermus WK1]
gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1]
Length = 163
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 31/129 (24%)
Query: 5 TEVNPT-----QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
T ++P+ +Q + K +LG+D FLK+LI Q++HQDP PM+ E ++Q+A FS
Sbjct: 10 TAIDPSLLLSQRQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSS 69
Query: 60 MEQSVQMNSTLQELLKSN------------------------NLAQASSYIGKNITNADG 95
+EQ V M++ L + +++ +LAQ S +IGK +T +
Sbjct: 70 LEQMVNMSNMLSKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTWDEQ 129
Query: 96 SISGVVNAI 104
SGVV A+
Sbjct: 130 --SGVVRAV 136
>gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 150
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K + +D FLKL I Q+K+QDP EPM +E AQ + F+ +EQ + MNS+++E+L S L
Sbjct: 23 KSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSMEEML-SLQL 81
Query: 80 AQASSYIGKNIT 91
A SYIG +T
Sbjct: 82 GNAVSYIGFEVT 93
>gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
Length = 245
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+LGQDAFL+LL+TQ+++QDP PM + VA+LA FS +EQ ++N+ + +L N +Q
Sbjct: 25 SLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEINTGIDKLADLNTQSQ 84
Query: 82 ---ASSYIGKNI 90
A ++IGK I
Sbjct: 85 VMGAVNFIGKTI 96
>gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
Length = 149
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 8/89 (8%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-SNNL 79
++LG+D FLKLL+TQ+++QDPT+PM+ E +AQ+A FS +E QMN+ Q+ + N L
Sbjct: 34 QSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLE---QMNNLSQQFVSVKNTL 90
Query: 80 AQASSY--IGK--NITNADGSISGVVNAI 104
+ ++Y IG+ +I D I G V A+
Sbjct: 91 GRNAAYDLIGRQVDILQGDQKIHGTVEAV 119
>gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae
Cit 7]
Length = 229
Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT +K+ S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ST+ + KS+ QASS +G+++
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103
>gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 171
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 13/116 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N +
Sbjct: 17 KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76
Query: 71 QELLKSNNLAQASSYIGKNI---TNADG--SISGVVNAIQVSSTGLTAITVDNTEI 121
ELLK A S IG+ I + DG I G V++I+V + + + V+ TE+
Sbjct: 77 -ELLK------AQSMIGRYIVATSTQDGLKQIEGRVDSIRVDGSKV-FLKVNGTEV 124
>gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
Length = 223
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 8/108 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDA-----FLKLLITQIKHQDPTEPMKASEQVAQLA 55
M I++ + P + + K +G D+ F+KL ITQ+++QDP +PM + E +QLA
Sbjct: 1 MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60
Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGV 100
FS ME +++M+ +++LL KS N Q IGKNI A IS V
Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEISMV 108
>gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp.
WCH70]
gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70]
Length = 140
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 59/87 (67%), Gaps = 5/87 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S +++ +K+ + L
Sbjct: 26 LGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQMINISSMIEQFIKTQHDHAL 85
Query: 80 AQASSYIGKNIT--NADGSISGVVNAI 104
+ S +IGKN+ + + SG+V ++
Sbjct: 86 LRYSEWIGKNVYWQEDENTKSGIVQSV 112
>gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 222
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 16/108 (14%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---SQME 61
+ PTQ+E LGQD FLKL+ITQ+++QDP PM++ E ++Q+A F S M+
Sbjct: 12 SRAQPTQRE-----PAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFTTASGMD 66
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101
Q + S Q+ +++N QA+S +G+ + ADG ++G+V
Sbjct: 67 QLQKSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIV 114
>gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
6725]
Length = 164
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 13/123 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI--TN-ADGS--ISGVVNAIQVSSTGLTAITVDN 118
+N + E LK A S IG+ + TN AD S I G +++I+V + + + V+
Sbjct: 69 QNLNESF-EFLK------AQSMIGRYVVATNPADTSKTIEGRIDSIRVDGSKV-YLKVNG 120
Query: 119 TEI 121
TE+
Sbjct: 121 TEV 123
>gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium]
Length = 159
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME++T +N +Q F + K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+
Sbjct: 29 MEVDT-IN--KQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTS 85
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNA 103
+EQ MN L + + A + +GK +I + G++SG + A
Sbjct: 86 LEQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITA 131
>gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii
DAH]
gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH]
Length = 144
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + + L
Sbjct: 33 LGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKSFESL 83
>gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens Pf0-1]
gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly
[Pseudomonas fluorescens Pf0-1]
Length = 242
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80
LG+DAFL+LL+TQ+K+Q+P +P S VAQLA FS +E +NST+ L + N +
Sbjct: 44 LGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLNSTVSSLAGNYNSSQA 103
Query: 81 -QASSYIGKNI 90
QASS +G+N+
Sbjct: 104 LQASSLVGRNV 114
>gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. B076]
gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. mori str. 301020]
gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. lachrymans str. M301315]
Length = 228
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ST+ + KS+ QASS +G+++
Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSV 102
>gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp.
B14905]
gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp.
B14905]
Length = 229
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL S Q
Sbjct: 35 LGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLLASQQQTQM 94
Query: 83 SSY---IGKNI 90
+Y +GK +
Sbjct: 95 MNYATFVGKEV 105
>gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 228
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ST+ + KS+ QASS +G+++
Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSV 102
>gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
2002]
gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 164
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 13/123 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI--TN-ADGS--ISGVVNAIQVSSTGLTAITVDN 118
+N + E LK A S IG+ + TN AD S I G +++I+V + + + V+
Sbjct: 69 QNLNESF-EFLK------AQSMIGRYVVATNPADTSKTIEGRIDSIRVDGSKV-YLKVNG 120
Query: 119 TEI 121
TE+
Sbjct: 121 TEV 123
>gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41]
gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41]
Length = 228
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL S Q
Sbjct: 34 LGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLLASQQQTQM 93
Query: 83 SSY---IGKNI 90
+Y +GK +
Sbjct: 94 MNYATFVGKEV 104
>gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly]
gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly]
Length = 146
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ M+ + + L
Sbjct: 35 LGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENL 85
>gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 264
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISNGIQKMGN-R 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
Q+ S +GK ++ D +I+G+ A+ G T + V+ I +
Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDV 152
>gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli
95/1000]
gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli
95/1000]
Length = 233
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + +K +LG+D FLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGL 111
+ + + S +GK++ A G V + + TG+
Sbjct: 87 ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGV 130
>gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Lai str. 56601]
gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Lai str. 56601]
Length = 264
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISNGIQKMGN-R 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
Q+ S +GK ++ D +I+G+ A+ G T + V+ I +
Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDV 152
>gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
Length = 141
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 12 QEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+++S ++ KK LG+DAFL LL+TQ+K+QDP PM + +AQ+A FS +EQ +N+
Sbjct: 15 RDYSGNQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNT 74
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
TL +N + +I + N S + +V+ + + GL +T +N E+P
Sbjct: 75 TL-----TNTQSSIMEHITQMNNNFVKSQTNIVDQLVKINEGLRKLTGENPEVP 123
>gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681]
gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681]
Length = 177
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +EQ + +++ L L
Sbjct: 25 ASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVEQLMNISTQLNALG 84
Query: 75 KSNNLAQASSYIGKNIT 91
+S L AS IGK ++
Sbjct: 85 QS--LGTASGLIGKEVS 99
>gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2]
gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2]
Length = 177
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +EQ + +++ L L
Sbjct: 25 ASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVEQLMNISTQLNALG 84
Query: 75 KSNNLAQASSYIGKNIT 91
+S L AS IGK ++
Sbjct: 85 QS--LGTASGLIGKEVS 99
>gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 197
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 10/123 (8%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+S +LG+D FLK+LI Q+ +Q+P +PM E +AQ+A F+ +EQ M + +L +
Sbjct: 34 RSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMTFMAEQMYDLRQ 93
Query: 76 SNNLAQASSYIGKNIT----NADGSI---SGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
S L AS+ IGK+++ N + GVV+AI + G+ + + EIPI R
Sbjct: 94 S--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIGKEEIPIDLITR 150
Query: 129 ISN 131
+ +
Sbjct: 151 VGD 153
>gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 131
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 16/131 (12%)
Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME+NT + + S++ S LG+D FL+LL+ Q+++QDP +PM E +AQLA FS
Sbjct: 1 MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKN----ITNADG---SISGVVNAIQVSSTGLT 112
+EQ +Q L S N +A + IGKN IT+ +G S+ G V+A+ G
Sbjct: 61 LEQ-------MQNLNVSFNAVRAINLIGKNVYATITDDNGNSTSVVGNVDAV-YKQNGEY 112
Query: 113 AITVDNTEIPI 123
+ V+ ++P+
Sbjct: 113 YLEVNGIDVPL 123
>gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 240
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
KK LG+DAFL+LL+TQ+K+Q+P EP E VAQLA FS +E +N T+ + + N
Sbjct: 40 KKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGITTLNETVSGIAGNYNS 99
Query: 80 A---QASSYIGKNI 90
+ QASS +G+++
Sbjct: 100 SQALQASSLVGRSV 113
>gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio
bacteriovorus HD100]
gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio
bacteriovorus HD100]
Length = 334
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNN 78
+L +DAF KL++TQ+K+QDPT P+K+ E AQLA FS +EQ MN +L E+ K +
Sbjct: 67 SLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKNGQKPSE 126
Query: 79 LAQASSYIGKNITNADGSISGVV 101
QA + IGK + G S VV
Sbjct: 127 NFQALNLIGKAVA---GDSSKVV 146
>gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 169
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TLG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + EL+K+ N+
Sbjct: 29 TLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESF-ELIKAQNMI- 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSST 109
+ N ++ ++ G V++I+V +
Sbjct: 87 GRYVVATNPSDTSKTVEGRVDSIRVDGS 114
>gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110]
gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110]
Length = 133
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+LG + FLK+L+TQ+ +QDP +PM E +AQ+A F+ +EQ+ Q+N+ ++ L+ + Q
Sbjct: 18 SLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQLNNKIETLITNQAALQ 77
Query: 82 ASSYIGK--NITNADGSISGVVNAIQVS 107
+ IGK ++ G+++G V+A+ +S
Sbjct: 78 SVGLIGKTVDVNTPTGAVTGTVSALSLS 105
>gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
magneticus RS-1]
gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
magneticus RS-1]
Length = 232
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
LG DAFL+LL+TQ+++QDP +PM E VA+LA FS +EQ ++NS L L + +
Sbjct: 27 LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86
Query: 80 AQASSYIGKNI 90
A ++IGK I
Sbjct: 87 IGAVNFIGKTI 97
>gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM
2638]
gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM
2638]
Length = 220
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K L +DAFLKL +TQ+K+QDP PM EQ+AQLA FS +E+ ++ + L K+ N
Sbjct: 22 KDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTVERLTNISKAMDGLTKTVNAM 81
Query: 81 ---QASSYIGKNI 90
A+ YIGK +
Sbjct: 82 MGLNATGYIGKTV 94
>gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
Length = 275
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 14/92 (15%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+DAFL+LL+ Q+++QDP P +E V+QLA FSQ+E+ LQ L S + +QA
Sbjct: 33 LGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEE-------LQNLTASTDKSQA 85
Query: 83 SSYIGKNI----TNADGS---ISGVVNAIQVS 107
S +GK++ T+++G ISG V+ I +S
Sbjct: 86 FSLVGKDVILNATDSNGRTTYISGTVDFINMS 117
>gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens Pf-5]
gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
Pf-5]
Length = 242
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + + K++LG+DAFLKLL+TQ+ +Q+P +P S VAQLA FS +E
Sbjct: 25 NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+NS++ + KS+ QASS +G+++
Sbjct: 85 TTLNSSVNAITGNYKSSQALQASSLVGRSV 114
>gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis
BSn5]
gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName:
Full=ORF 8
gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
168]
gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis
BSn5]
Length = 140
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++
Sbjct: 18 STNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQMMNLNTTMTQFVEN 77
Query: 77 NN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121
+ ++GK ++ DG +G V++++ + D TEI
Sbjct: 78 QDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDDGTEI 127
>gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae FF5]
gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. japonica str. M301072PT]
gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 229
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ST+ + KS+ QASS +G+++
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103
>gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus
SJ]
Length = 281
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+F +K LG+D FLKLL Q+ +QDP +PM + A LA FSQ+EQ MN+ +
Sbjct: 44 QKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTKMD 103
Query: 72 ELLKSN---NLAQASSYIGKNI 90
+ K++ N A+S+IGK I
Sbjct: 104 GMQKNDTTENKFMAASFIGKEI 125
>gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
16646]
gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
16646]
Length = 129
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+ LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS +EQ +NS + +
Sbjct: 22 GRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSLEQLQNLNSQISAM----- 76
Query: 79 LAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
A S+IGK + +SG++ + L I D ++
Sbjct: 77 --SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDEEKL 119
>gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
Length = 220
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77
KK L ++AFL+LL+T++++QDPT+PM+ + VAQL+ S EQ M+ +QE++ S
Sbjct: 24 KKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSSTEQITNMSQAIQEMVNSQMS 83
Query: 78 -NLAQASSYIGKNITNADGSI---SGVVNAI 104
N QA+S IGK + D +I SGV +
Sbjct: 84 LNKLQAASLIGKTVVVNDNTIDLQSGVAEGL 114
>gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 194
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+K LG+D FLKLL+TQ+ HQDPT P++ + +AQ+A FS +EQ ++S + +
Sbjct: 51 QKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM----ES 106
Query: 80 AQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
Q+ S +GK ++ D ++G+ AI + G T + V+ + ++
Sbjct: 107 KQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVS 155
>gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. natto BEST195]
Length = 140
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++
Sbjct: 18 STNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTQFVEN 77
Query: 77 NN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEI 121
+ ++GK ++ DG +G V++++ + D TEI
Sbjct: 78 QDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDDGTEI 127
>gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae B728a]
gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae
B728a]
gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 229
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ST+ + KS+ QASS +G+++
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSV 103
>gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus
licheniformis ATCC 14580]
gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus
licheniformis ATCC 14580]
gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2]
gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580]
gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580]
gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2]
Length = 155
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K+ S LG+D FLKLL+ Q+++QDP PM+ E +AQ+A FS +EQ +N+T+ +
Sbjct: 33 KAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNTTMSTFVG 92
Query: 76 -SNNLAQASSYIGKNIT 91
+ + S+IGK +T
Sbjct: 93 LQDPMTMYVSWIGKEVT 109
>gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 271
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +E QMN+ + K N
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLE---QMNNISTGIQKMGN-R 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
Q+ S +GK ++ D +++G+ A+ G T + V+ I +
Sbjct: 106 QSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDV 152
>gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
Length = 245
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 75/135 (55%), Gaps = 28/135 (20%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77
++L ++F+KLL TQ+++QDPT P S+ +AQLA FS ++ Q+N+T Q L+S+
Sbjct: 38 ESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFSSLQGISQLNTTVNGFQSTLQSS 97
Query: 78 NLAQASSYIGK------------NITNADGSI--SGVVNAIQVSSTGLTAIT-------- 115
+ QA++ +GK N T ADG+ SG++ A+ + TG T+++
Sbjct: 98 QIMQAAALVGKAAIVKGDTAHMYNSTAADGTTKASGILGAVDI-PTGATSVSVSITNASG 156
Query: 116 --VDNTEIPITTGIR 128
VD +P++ R
Sbjct: 157 QVVDTQSVPVSGSAR 171
>gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp.
TrichCH4B]
gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp.
TrichCH4B]
Length = 231
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82
+ FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L + +N++Q
Sbjct: 34 ETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLTALSLSNMSQL 93
Query: 83 SSYIGKNI 90
+ ++GK +
Sbjct: 94 TGWVGKEV 101
>gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO]
gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO]
Length = 219
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNL 79
TL +DAFL LLITQ+K+QDP EPM + +AQL FS +EQ M +++QE L+ L
Sbjct: 22 TLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITNMTNSIQEFLTLQEGAL 81
Query: 80 -AQASSYIGKNIT 91
AQ++S IGK T
Sbjct: 82 QAQSASLIGKYAT 94
>gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
Length = 226
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 10/81 (12%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQA 82
D FLKLL TQ++HQDPT PM + + QL S +EQS+Q N L+ L+ +N N +Q+
Sbjct: 31 DTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLETLITANAIQNASQS 90
Query: 83 SSYIGKNITN-------ADGS 96
S +GK +T ADGS
Sbjct: 91 VSLLGKEVTGSGTGTLLADGS 111
>gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida
F1]
gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1]
Length = 234
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNN 78
+LG+DAFL+LL+TQ++HQ+P +P SE VAQLA FS +E +N S++ + S+
Sbjct: 37 SLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGITSLNDSVSSITSAMASSQ 96
Query: 79 LAQASSYIGKNI 90
QASS +G+++
Sbjct: 97 ALQASSLVGRSV 108
>gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae 642]
Length = 229
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N+ NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNSLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ GS S
Sbjct: 73 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111
>gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus
TCF52B]
gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus
TCF52B]
Length = 222
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K + KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++
Sbjct: 19 KQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVE 78
Query: 76 SN---NLAQASSYIGK 88
S+ AQASS +GK
Sbjct: 79 SSASLYRAQASSMVGK 94
>gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 263
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T ++K K LG++ FL LL+TQ+ HQDP PM E VAQLA FS +EQ ++
Sbjct: 16 TNDPYAKRKGAD-LGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGG 74
Query: 70 LQELLKSNNLAQ---ASSYIGKNITNADGSIS 98
+ L ++N Q A +IGK + A S+S
Sbjct: 75 IDNLNDASNQGQMISAVGFIGKEVRAAGNSLS 106
>gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
B-14911]
gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
B-14911]
Length = 211
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 20/126 (15%)
Query: 16 KSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
K +KT LG+D FLK+L+ Q+++QDP+ P++ + +AQ+A FS +EQ MN+++Q
Sbjct: 15 KKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQMTNMNTSIQ 74
Query: 72 ELL---KSNNLAQASSYIGKNIT----------NADGSI---SGVVNAIQVSSTGLTAIT 115
+L+ + ++L S + GK I NA SI +G V++IQ + I
Sbjct: 75 KLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFKNGNAVFIL 134
Query: 116 VDNTEI 121
D TE+
Sbjct: 135 EDGTEL 140
>gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. actinidiae str. M302091]
Length = 229
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E +
Sbjct: 21 NPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLT 77
Query: 68 STLQEL---LKSNNLAQASSYIGKNI 90
ST+ + KS+ QASS +G+++
Sbjct: 78 STVDTIATSYKSSQALQASSLVGRSV 103
>gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
Length = 235
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
LGQDAFL+LL+TQ+++QDP PM E VA+LA FS +EQ ++N+ + L L
Sbjct: 28 LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87
Query: 80 AQASSYIGKNI 90
A ++IGK I
Sbjct: 88 LGAVNFIGKTI 98
>gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
Length = 184
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE------ 72
+K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++
Sbjct: 28 TKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVGAFG 87
Query: 73 -LLKSNNLAQASSYIGKNITNADGSISGVVNAI 104
L +++ L+Q ++ IGK++ A+ SG VN I
Sbjct: 88 ALFQNSLLSQGAALIGKHVEGANIDGSGFVNGI 120
>gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis
MB4]
Length = 131
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 20/133 (15%)
Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M +NT + P+ Q +KSK LG+D FL LL+TQ+K+QDP P+ E +AQLA F
Sbjct: 1 MNVNTNYSVLPPSNQNKVTTKSK--LGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQF 58
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGS-----ISGVVNAIQVSSTG 110
S +EQ +Q L +S N +A + IGKN+ T DG+ + G V+A+ G
Sbjct: 59 SALEQ-------MQNLNESFNSVKAIALIGKNVYATINDGNGNYKEVFGKVDAV-YRENG 110
Query: 111 LTAITVDNTEIPI 123
+ V +IP+
Sbjct: 111 QYFLKVKGLDIPL 123
>gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
Length = 139
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +AF+KLLITQ+++QDP+ PM E ++Q++ + +++ L+ L S L +
Sbjct: 27 LDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLNSS 86
Query: 83 SSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++++GK I T A+G+ +SGVV+ + V + + V + E+P+T ++N
Sbjct: 87 TAFLGKEIKGTTANGTEVSGVVDRVYVKDKA-SFLVVGDKEVPLTNVTDVTN 137
>gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans
AK-01]
gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum
alkenivorans AK-01]
Length = 230
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
NPT + + LGQ+ FL+LLI Q+K+QDP PM+ ++ AQLA FS +EQ +
Sbjct: 17 NPTTE-----STGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSLEQLFGIG 71
Query: 68 STLQELL--KSNNLAQASSY-IGKNITNADGSIS 98
+L+E+L +SNN Y +GK I D S++
Sbjct: 72 DSLEEMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105
>gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
Length = 182
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K K LG+DAFL+LL+TQ+K+QDP +P + + Q+A F+ +EQ + M+ L L
Sbjct: 23 KDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLMNMSDQLS--LL 80
Query: 76 SNNLAQASSYIGKNITNADGSISG-------VVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ NL ASS IGK ++ + +G VN+I L A D T I ++ +
Sbjct: 81 NQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFADETMIKLSDVVT 140
Query: 129 ISN 131
+S+
Sbjct: 141 VSD 143
>gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 229
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ T+ + KS+ QASS +G+++ GS S
Sbjct: 73 MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111
>gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR]
gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR]
Length = 146
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-- 69
QE K LG+D FLKLL+TQ+K+QDP EP + +AQ+A FS +EQ M+
Sbjct: 16 QEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALEQMTNMSDGFT 75
Query: 70 ----LQE-LLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+QE L + + ++QA IGK + + + ++G V A+++ G + V+ E
Sbjct: 76 KLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIVD-GEPRVVVNGKE 134
Query: 121 I 121
I
Sbjct: 135 I 135
>gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040]
gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp.
TM1040]
Length = 231
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L + +N++Q +
Sbjct: 36 FLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLTALSLSNMSQLTG 95
Query: 85 YIGKNI-TNADGSISG 99
++G+ + A G G
Sbjct: 96 WVGREVRAQAAGYFDG 111
>gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15]
gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15]
Length = 218
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
KK+ G +D FLKL +TQ++HQDP P +SE + QLA +Q+EQ+ NS L +++
Sbjct: 17 KKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQAYNTNSNLTKIIDLF 76
Query: 78 NLA---QASSYIGKNIT-NAD 94
N A + SYIGK++T N D
Sbjct: 77 NGATSLSSVSYIGKSVTANGD 97
>gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida
GB-1]
gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1]
Length = 233
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ+K+Q+P +P + E VAQLA FS +E +N ++ + L+S+
Sbjct: 36 LGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLNDSVTYIAAGLQSSQA 95
Query: 80 AQASSYIGKNI 90
QASS +G+N+
Sbjct: 96 LQASSLVGRNV 106
>gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
Length = 263
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N+ T S + +L ++ FL LL+TQ+K+QDP P ++E V+QLA FS +EQ
Sbjct: 6 VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119
MN++L+ L L YI ++T + G ++ G V+++ +S+ G A+ V
Sbjct: 66 MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTMSN-GEAALVVGGK 121
Query: 120 EIPIT 124
I ++
Sbjct: 122 SIELS 126
>gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
Length = 263
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGL 111
+ + S +GK++ A G V + + TG+
Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGV 130
>gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces
maris DSM 8797]
gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces
maris DSM 8797]
Length = 145
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
++F+KLLIT++++QDPTEP+ + +AQ++ +++ +++++ TL+E+ +L QA++
Sbjct: 34 ESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLTQAAAL 93
Query: 86 IGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPIT 124
IGK + +G ++GVV V G + + + E+P++
Sbjct: 94 IGKEVEGQEGQQNPVAGVVERAFVRD-GKSYVGIGAFELPVS 134
>gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola
ATCC 35405]
gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC
33520]
gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema
denticola]
gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola
ATCC 35405]
gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402]
Length = 169
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 9/99 (9%)
Query: 11 QQEFSKSK-SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-- 67
+Q F++++ K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ MN
Sbjct: 45 KQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNKN 104
Query: 68 -STLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNA 103
+ L EL+ ++ A +GK + GS +SG ++A
Sbjct: 105 FAALNELMTGSSAVNA---VGKKVDLDLGSSQVSGYISA 140
>gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus
kaustophilus HTA426]
gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426]
gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
Length = 142
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 64/101 (63%), Gaps = 6/101 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ +++++ L
Sbjct: 27 LGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIANLMQQWMQASSRDAL 86
Query: 80 AQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDN 118
+ S +IGK + DG +S VV ++ + G + +DN
Sbjct: 87 LRYSEWIGKTVHWQDGETMMSAVVQSV-MQKDGQVTLGLDN 126
>gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
Length = 140
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124
L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134
>gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria
monocytogenes EGD-e]
gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
1/2a F6854]
gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria
monocytogenes Finland 1988]
gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL R2-561]
gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165]
gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria
monocytogenes 10403S]
gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria
monocytogenes J0161]
gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900]
gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria
monocytogenes LO28]
gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5578]
gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5923]
gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e]
gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
1/2a F6854]
gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar
6b str. SLCC5334]
gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165]
gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900]
gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5578]
gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5923]
gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
Length = 140
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124
L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134
>gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4]
gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4]
Length = 136
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+++T + PT + S ++ +D FLK+L+ Q+ H DP P K +++++
Sbjct: 1 MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTA 113
+ +EQ +++ S+L + L Q +S +GK +T ADGS ++G V +++ G
Sbjct: 61 NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRLED-GKIR 119
Query: 114 ITVDNTEIPI 123
+ +D E P+
Sbjct: 120 LVIDGREYPL 129
>gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
4b H7858]
gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459]
gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J1-194]
gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
R2-503]
gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
HPB2262]
gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J2-064]
gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J1-175]
gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J2-071]
gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
N1-017]
gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
4b H7858]
gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
R2-503]
gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J2-071]
gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
HPB2262]
gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J1-194]
gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
N1-017]
gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99]
gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208]
gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria
monocytogenes 1816]
gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria
monocytogenes 220]
gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str.
Scott A]
Length = 140
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + + +L +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTE-IPIT 124
L A ++IGK+I +G ISG V ++Q ++ G+ DN +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMT 134
>gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas
palustris BisA53]
gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
Length = 135
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
T+G + FL+LLI Q+K+QDP+ P ++ ++Q A S +EQ++Q N+ L LL ++ L+Q
Sbjct: 24 TVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSVEQAIQTNAKLDTLLSTSALSQ 83
Query: 82 ASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
A IG+ + D S +G + ++ + G A ++ + GI IS
Sbjct: 84 AEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDTGVQVLLGPGITIS 135
>gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 214
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 1 MNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ +T+ + KS+ QASS +G+++
Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSV 88
>gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
Length = 136
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K LG+D FLKLL+ Q+++QDP +PM+ E +AQ+A FS +EQ +NST+ +
Sbjct: 22 KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77
Query: 78 NLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNT 119
QA IGK + N +G+ +G V A+++S + D T
Sbjct: 78 ---QAMGLIGKTVRWQNENGAEQAGNVRAVKISDRQPYIVVGDTT 119
>gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
Length = 141
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
TQQ + + + + +D FL+LL+TQ+++QDP +P SE VAQ+A F+ +EQ +N+T
Sbjct: 13 TQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQNLNNT 72
Query: 70 LQELL--KSNNLAQASSYIGKNITNADGS---ISGVVNAIQ 105
+ +LL +S+ A +++G ++T D + ++G+V+A++
Sbjct: 73 MAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVE 113
>gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp.
SG-1]
gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp.
SG-1]
Length = 211
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ + K LG+D F+K+L+TQ+++QDP PM+ + +AQ+A FS +EQ ++ +++
Sbjct: 15 QQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQITNLSKSME 74
Query: 72 ELLKS---NNLAQASSYIGKNIT 91
+++ NNL + ++GK IT
Sbjct: 75 TFIEAQGQNNLIAYNQFVGKEIT 97
>gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
Length = 151
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS +EQ + ++ + + A
Sbjct: 30 LDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSALEQMTNVAEGQEKAATATEMQAA 89
Query: 83 SSYIGKNITNAD--GSI-SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ +IGK I+ D G+I SGV A+QV GL + + +P ++ + + +
Sbjct: 90 AEWIGKRISYLDDKGNIQSGVAQAMQVKE-GLVYLDLGGLSVPWSSILEVGD 140
>gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp.
Y412MC61]
gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61]
gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
Length = 142
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++
Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIANLMQQWMQ 79
Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDN 118
+++ L + S +IGK + DG +S VV ++ + G + +DN
Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSV-MQKDGQVTLGLDN 126
>gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida
W619]
gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619]
Length = 235
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79
LG+DAFL+LL+TQ++HQ+P +P + E VAQLA FS +E +N S++ + S+
Sbjct: 39 LGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSLNESVSSITNAMASSQA 98
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 99 LQASSLVGRSV 109
>gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 221
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 7/78 (8%)
Query: 20 KKTLGQ----DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
KKT G + FLK+L Q ++QDP EP+ +SE AQLA FS +EQ VQ N L L
Sbjct: 21 KKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNELLDGLAG 80
Query: 74 -LKSNNLAQASSYIGKNI 90
L + NL + +++IGK++
Sbjct: 81 TLSAANLTEMAAWIGKDV 98
>gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
Length = 251
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNN 78
+L + F+ L ITQ++HQDP +PM++ E +QLA FS ME ++QM+ +++LL S N
Sbjct: 28 SLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSDNMEKLLSYQMSQN 87
Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSST 109
Q S IGK I DG+ GV + QV+ T
Sbjct: 88 NLQLLSLIGKTI-ETDGNEIGVTDG-QVART 116
>gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
Length = 230
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79
LG+DAFLKLLITQ++HQDPT PM E ++Q+A FS +EQ M ++ + + +
Sbjct: 34 LGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTKAMESLLSSQQQSQM 93
Query: 80 AQASSYIGKNI 90
+++IGK +
Sbjct: 94 MNYATFIGKEV 104
>gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1]
Length = 145
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L ++AFLKLLI ++ +QDP PM+ E +AQ+A FS +EQ MN TL+ + +++ A
Sbjct: 26 LDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQFSSLEQMQNMNKTLESMAQASKF-DA 84
Query: 83 SSYIGKNIT 91
SYIGK I+
Sbjct: 85 VSYIGKAIS 93
>gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1]
gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1]
Length = 215
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 14/112 (12%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
KTL +DAFLK+LI Q+++QDPT+PM ++ V+Q+A FS +EQ + + + L+K + +
Sbjct: 27 KTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSLEQMTNLKNDIDNLIKLSQQS 86
Query: 81 Q---ASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLTAITVDN 118
Q + YIG+ + T DG+ S G + I T+D+
Sbjct: 87 QQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISFGDDNAVTFTLDD 138
>gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi
DSS-3]
gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3]
Length = 222
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 8/79 (10%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
D F+++L TQ K+Q+P EP+ +SE AQLA FS +EQ + N TL L L + ++A+
Sbjct: 32 DTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQTKTNDTLTALVEKLGATDMAKL 91
Query: 83 SSYIGKNI-----TNADGS 96
S++IGK + N DG+
Sbjct: 92 SNWIGKEVRAVAPANFDGT 110
>gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus
amyloliquefaciens TA208]
gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3]
Length = 143
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+T+ + +++ +
Sbjct: 24 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKYVENQD 83
Query: 79 -LAQASSYIGKNITNAD 94
++IGK++T +D
Sbjct: 84 PFTMYVNWIGKSVTFSD 100
>gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
Length = 131
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 15/112 (13%)
Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME+NT + + S+ SKK LG+D FLKLL+ Q+K+Q+P PM E +AQLA FS
Sbjct: 1 MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADG---SISGVVNAI 104
+EQ +N++ + +A + +GKNI T+ +G ++ G V+A+
Sbjct: 61 LEQMQNLNTSFSAV-------RAINLLGKNIYATVTDNNGESKAVEGKVDAV 105
>gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
4028]
gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
4028]
Length = 226
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 8/79 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ- 81
LG+DAFLKLL+TQ+++QDP P+ E +AQLA FS +EQ ++ ++ L S+ AQ
Sbjct: 24 LGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKGL--SDKTAQQ 81
Query: 82 ----ASSYIGKNIT-NADG 95
A +YIGK +T + DG
Sbjct: 82 DMLSAVNYIGKEVTASGDG 100
>gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
Length = 221
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77
KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++S+
Sbjct: 22 KKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVESSAS 81
Query: 78 -NLAQASSYIGK 88
AQ SS +GK
Sbjct: 82 LYRAQVSSMVGK 93
>gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium
eligens ATCC 27750]
gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium
eligens ATCC 27750]
Length = 185
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 15/110 (13%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++NT ++ T + S S +K TL + FL+L++ ++++QDP EP S+ +AQLA F+Q+E
Sbjct: 22 DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80
Query: 62 QSVQMNS-TLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQ 105
+ +MN+ TLQ + AS +GK + N+DG I G V+ +
Sbjct: 81 ATKEMNTNTLQGM--------ASDLVGKQVIMTTNQNSDGFIGGTVDYWE 122
>gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
Length = 218
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 7 VNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
VN FS S +KK L ++AFLKLLITQ+K QDP EPMK + +AQ++ S +EQ
Sbjct: 5 VNSMSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSLEQV 64
Query: 64 VQMNSTLQELLKSN---NLAQASSYIGK 88
+ M+ ++Q + + QA S IGK
Sbjct: 65 MNMSKSVQSFVDTAAQLYRTQAVSMIGK 92
>gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum
ATCC 824]
gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum
ATCC 824]
gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum
EA 2018]
Length = 239
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TLGQDAFLK+LI ++ HQDPT +++ +AQLA FS +EQ +N T+ +
Sbjct: 35 TLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQMTNLNRTM-------TFSG 87
Query: 82 ASSYIGKNIT 91
ASS +G +T
Sbjct: 88 ASSLMGGTVT 97
>gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae
bacterium KLH11]
gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae
bacterium KLH11]
Length = 221
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FL++L Q ++QDP EP+ +SE +QLA FS +EQ VQ N+ L +L L S NL Q +S
Sbjct: 33 FLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSLTLGSVNLNQLAS 92
Query: 85 YIGKNI 90
++G ++
Sbjct: 93 WVGMDV 98
>gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
Length = 222
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82
D FL LL TQ+K+QDP +PM SE V QL FS +EQ + N L++ LL S + A +
Sbjct: 26 DMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNVEQQIAQNKNLEQMILLLNSQSAASS 85
Query: 83 SSYIGKNI 90
SYIG+++
Sbjct: 86 VSYIGRDV 93
>gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas
entomophila L48]
gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas
entomophila L48]
Length = 234
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ++HQ+P +P E VAQLA FS +E +NS++ + + S+
Sbjct: 38 LGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLNSSVNSIITGMGSSQA 97
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 98 LQASSLVGRSV 108
>gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
Length = 225
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71
+++K LGQ+ FLKLL TQ+++QDP +PM+ E +AQ+A FS + Q+N TL
Sbjct: 21 TQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNGTLSGIG 80
Query: 72 ELLKSNNLAQASSYIGKNI 90
E L S A A+S IG+++
Sbjct: 81 EGLGSFRTATAASLIGRSV 99
>gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus
thermodenitrificans NG80-2]
gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
Length = 142
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + + + +Q+ ++
Sbjct: 20 RKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIANLMQQWMQ 79
Query: 76 S---NNLAQASSYIGKNIT--NADGSISGVVNAI 104
+ + L + S +IGK + D ++S VV ++
Sbjct: 80 ASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSV 113
>gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354]
Length = 215
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82
D FLKLL TQ+++QDP +PM+ SE QL +SQ+EQS+Q + L+++L + ++AQ+
Sbjct: 23 DMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSIQQTAALKDILSALSTQDIAQS 82
Query: 83 SSYIGKNITNADGSISGV 100
++++G+ D S +G+
Sbjct: 83 ANFLGQR-AELDSSTAGL 99
>gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium
vulgare Y25]
gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium
vulgare Y25]
Length = 217
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FLK+L+ Q+++QDP P+ ++E AQLA FS +EQ VQ N L +L+ NL S
Sbjct: 31 FLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGNLGAMSG 90
Query: 85 YIGKNI 90
+IGK++
Sbjct: 91 WIGKDV 96
>gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
Length = 219
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS--- 84
FL LL TQI++QDP +P+ ++E QL +S +EQ++Q N L +++++ QASS
Sbjct: 29 FLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVEQAIQSNQHLAKMVEAMQAGQASSYVN 88
Query: 85 YIGKNITNADGS 96
YIG +IT + G+
Sbjct: 89 YIGSDITASGGT 100
>gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua
Clip11262]
gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262]
gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378]
Length = 140
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124
L A ++IGK+I +G ISG V ++Q ++ G + I ++ +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPMT 134
>gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
Length = 146
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L + AFL LL+ Q+K+QDP PM+ E +AQLA + +EQ Q+N T+ + + L Q
Sbjct: 25 LDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQLNETVAAMAQHAALGQV 84
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ Y+G+ ++ D + +V V +T L V + ++ G RI
Sbjct: 85 AGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAV----LELSGGQRI 127
>gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313]
Length = 323
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +Q L
Sbjct: 23 STQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQ-------MQNLN 75
Query: 75 KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
KS + +A IGK IT G + G+V ++++ + G + V+ ++P+
Sbjct: 76 KSFSATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKMEN-GKILLEVNGLDVPVDNV 134
Query: 127 IRIS 130
+ +S
Sbjct: 135 LSVS 138
>gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023]
Length = 140
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124
L A ++IGK+I +G ISG V ++Q ++ G + I ++ +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPMT 134
>gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17029]
gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17029]
Length = 223
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNI 90
+ L + A A+S IGK++
Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97
>gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
Length = 285
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
E ++QE + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ
Sbjct: 18 ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77
Query: 66 MNSTLQELLKSNNLAQASSYIGKNIT 91
MN ++ + +QA + IGK IT
Sbjct: 78 MNGSMTK-------SQAFNLIGKVIT 96
>gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
Length = 274
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K TLG + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K
Sbjct: 24 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 83
Query: 78 NLAQAS---SYIGKNITNADGSISGVVNAIQVSSTGLT 112
AQ S SY+G+ + +SG +Q S+ LT
Sbjct: 84 QTAQTSQGISYLGQTV-----EVSGTDLPLQDSAASLT 116
>gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC
27405]
gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20]
gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC
27405]
gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20]
Length = 323
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +Q L
Sbjct: 23 STQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQ-------MQNLN 75
Query: 75 KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
KS + +A IGK IT G + G+V ++++ + G + V+ ++P+
Sbjct: 76 KSFSATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKMEN-GKILLEVNGLDVPVDNV 134
Query: 127 IRIS 130
+ +S
Sbjct: 135 LSVS 138
>gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp.
TJI-51]
gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp.
TJI-51]
Length = 233
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + +
Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87
Query: 74 --LKSNNLAQASSYIGKNI 90
L+S+ QASS +G+N+
Sbjct: 88 AGLQSSQALQASSLVGRNV 106
>gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida
KT2440]
gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas
putida KT2440]
Length = 233
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + +
Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87
Query: 74 --LKSNNLAQASSYIGKNI 90
L+S+ QASS +G+N+
Sbjct: 88 AGLQSSQALQASSLVGRNV 106
>gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1]
Length = 233
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N + +
Sbjct: 28 STGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLNDAVTYIA 87
Query: 74 --LKSNNLAQASSYIGKNI 90
L+S+ QASS +G+N+
Sbjct: 88 AGLQSSQALQASSLVGRNV 106
>gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides]
gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
Length = 223
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNI 90
+ L + A A+S IGK++
Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97
>gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32]
gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32]
Length = 221
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-KSNNLA- 80
L +D FL+L +TQ+++QDP P +S+ + QLA +++EQS N+ LQ +L +SNN+A
Sbjct: 24 LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83
Query: 81 -QASSYIGKNI 90
A S+IGK+I
Sbjct: 84 LSAVSFIGKSI 94
>gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides
2.4.1]
gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides
KD131]
gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides
2.4.1]
gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides
KD131]
Length = 223
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNI 90
+ L + A A+S IGK++
Sbjct: 76 GIGDGLGAFRTATAASLIGKSV 97
>gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
Length = 178
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75
++ +LG+DAFL+LL+TQ++HQDP P ++ +AQLA FS +EQ QM + + K
Sbjct: 29 ARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGFENVSKL 88
Query: 76 ------SNNLAQASSYIGKNI 90
S + S+ IGKNI
Sbjct: 89 VSNIDSSVLVGSLSNMIGKNI 109
>gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum
magnetotacticum MS-1]
Length = 277
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K TLG + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K
Sbjct: 28 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 87
Query: 78 NLAQAS---SYIGKNI 90
AQ S SY+G+ +
Sbjct: 88 QTAQTSQGISYLGQTV 103
>gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct]
Length = 238
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L
Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94
Query: 75 KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 95 QSSQALQASSLVGRKV 110
>gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 140
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 69/111 (62%), Gaps = 7/111 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTG-LTAITVDNTEIPIT 124
L A ++IGK+I + +G ISG V ++Q ++ G + + ++ +P+T
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQDSLVPLT 134
>gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
Length = 139
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K LG+D FLKLLI Q+ +QDP +P+K + +AQ+A F+ +EQ+ M ++ L K ++
Sbjct: 27 KNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETLTKL-SM 85
Query: 80 AQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPI 123
A Y+G+ + D S +G V ++ +T D + + +
Sbjct: 86 TSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLAL 132
>gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PAb1]
gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 237
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L
Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94
Query: 75 KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 95 QSSQALQASSLVGRKV 110
>gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067]
gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171]
Length = 140
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSN 77
KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + L E +++
Sbjct: 24 KTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNS 83
Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGL 111
L A ++IGK+I + +G ISG V ++Q ++ G+
Sbjct: 84 ALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGV 120
>gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PAO1]
gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2]
gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa LESB58]
gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa C3719]
gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 2192]
gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 39016]
gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa PAO1]
gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa C3719]
gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 2192]
gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa LESB58]
gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 39016]
Length = 237
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L
Sbjct: 35 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 94
Query: 75 KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 95 QSSQALQASSLVGRKV 110
>gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
Length = 138
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 4/106 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
++L D F+KLL+TQ+K+QDP PM ++ +AQ S ME+ ++++ +E
Sbjct: 22 QSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTELSTGAKESFSLQMRT 81
Query: 81 QASSYIGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPI 123
A+ +G + T DG+ SG+ +A+ +TG+ +TV N+++P+
Sbjct: 82 AAAQIVGSEVAYTLPDGTAGSGIASAVSF-TTGVPVVTVGNSKVPL 126
>gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
Length = 220
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 18 KSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
KS++TL D FL LL TQIK+QDP +P+ ++ QL +S +EQS+ N+ L++L+
Sbjct: 19 KSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSSVEQSILTNTYLEQLMA 78
Query: 76 SNNLAQAS---SYIGKNIT 91
S QAS SY+G +T
Sbjct: 79 SVKSGQASGYVSYLGAEVT 97
>gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PA7]
gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa PA7]
Length = 227
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N +++ +L
Sbjct: 25 KGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSMESILSNY 84
Query: 75 KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 85 QSSQALQASSLVGRKV 100
>gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus
iheyensis HTE831]
gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831]
Length = 172
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 66/110 (60%), Gaps = 13/110 (11%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80
LG+D FLKLL+ Q+++QDPT+PM S+ ++Q+A FS +EQ + M++++ E+L +N+L
Sbjct: 23 LGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI-EMLVNNSLVSP 81
Query: 81 --QASSYIGKNIT-----NADGSISGVVNAIQVSST---GLTAITVDNTE 120
Q S IG+ ++ G +G+ +I V T G ++N E
Sbjct: 82 VLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENGE 131
>gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17]
gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17]
Length = 231
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
+K TL Q AFL LL Q+K+QDP PM ++ VAQ+A FS + +MN+TL +
Sbjct: 30 AKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIATK 89
Query: 74 LKSNNLAQASSYIGKNI----TNADGSISG 99
L + A A +Y+GK + T A G SG
Sbjct: 90 LNATTPADAMNYVGKTVLTEGTTAYGRTSG 119
>gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
Length = 237
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104
++ M ++ + A S +GK + +A G SG V+ +
Sbjct: 75 TLSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121
>gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 134
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 13/95 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D FL+LL+TQ+++QDP PM E +AQ+A FS +EQ +Q L +S + +A
Sbjct: 28 LGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQ-------MQNLNESFSAVKA 80
Query: 83 SSYIGKNIT---NADGS---ISGVVNAIQVSSTGL 111
S +GK +T +++GS ++G V++++ + L
Sbjct: 81 YSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNL 115
>gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 263
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 11 QQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+Q F+ KT L + AFL LL+ Q+ HQDP PM E VAQLA F+ +EQ +
Sbjct: 11 EQTFNNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNI 70
Query: 67 NSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++ + +L K ++ A YIGK +T + IS Q STG T +V + +
Sbjct: 71 STGITDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYF 125
Query: 124 TTGIRISN 131
TT ++SN
Sbjct: 126 TTQEQVSN 133
>gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
Length = 226
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 11/95 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76
KS ++L Q+ FLKLL TQ++ QDP P+ ++ VAQ+A FSQ +MN +L+ +++S
Sbjct: 26 KSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMNQSLKSMVQSL 85
Query: 77 --NNLAQASSYIGKNI--------TNADGSISGVV 101
+ +A A+++IGK ADGS +G V
Sbjct: 86 QQSRVADAANWIGKAALLPSKAASALADGSFAGNV 120
>gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp.
CCS1]
gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1]
Length = 221
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
D FL+LL TQ+++QDP P ++E AQLA FS +EQ V+ N L++L S N+ Q
Sbjct: 31 DMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETNDLLRDLQASFASMNMGQL 90
Query: 83 SSYIG 87
S +IG
Sbjct: 91 SGWIG 95
>gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411]
gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411]
Length = 226
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
K T+ ++ FLKLL+ Q+++QDP PM + + + +FSQ+EQ + M+ ++ + LK
Sbjct: 25 KATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENTMFSQLEQLMNMSKSMNKFMGDLKG 84
Query: 77 NNLAQASSYIGKNITNADGSIS 98
N A+SY+GK I+ + I+
Sbjct: 85 NPKEYAASYLGKYISTGENKIN 106
>gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii
DFL-11]
gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii
DFL-11]
Length = 196
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84
FL +L TQI++QDP +P+ ++E QL +S +EQS+Q N L+E LL SN + +
Sbjct: 8 FLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSSAYVN 67
Query: 85 YIGKNITNADGS 96
YIG +T A G+
Sbjct: 68 YIGTEVTAAGGT 79
>gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
12809]
gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
12809]
Length = 232
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 24/133 (18%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
E N TQ E S+S FL L ITQ+++QDPT+PM S + Q A F+Q+E
Sbjct: 20 EYNNTQGELSQSD---------FLNLFITQLQNQDPTDPMDDSAMMEQTATFTQVELLTS 70
Query: 66 MNSTLQELL-KSNNL------AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
M +L E+ ++NL AS YIGK + DG+ + + S G+ A++ +
Sbjct: 71 MEKSLSEIAGGASNLNTQQLMMSASGYIGK-LVEFDGNNTYL-------SDGVAAVSFEA 122
Query: 119 TEIPITTGIRISN 131
E+P T + I +
Sbjct: 123 EEVPFKTTVTIKD 135
>gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4]
Length = 251
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ SN A
Sbjct: 28 LGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIE---SSNANALV 84
Query: 83 SSYIGKNITNADG---SISGVVNAIQ 105
Y+ T++ G + G V+ +Q
Sbjct: 85 GKYVIIKTTSSTGETTATEGFVDYVQ 110
>gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 167
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 22/136 (16%)
Query: 8 NPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N +Q K+ +K LG+DAFLKL+I Q+++QDP PM ++ VAQ+A F+ +EQ +
Sbjct: 13 NYSQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNI 72
Query: 67 NSTLQELLKSNNLAQASSYIGKNIT--------NADGSI----------SGVVNAIQVSS 108
+ + L +S L S IGK +T N D S SG+V +I V S
Sbjct: 73 SEQIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESIIVRS 130
Query: 109 TGLTAITVDNTEIPIT 124
G+ + V + EI I+
Sbjct: 131 -GVHYVKVGDKEIKIS 145
>gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 225
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L
Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTL- 77
Query: 75 KSNNLAQASS-------YIGKNI 90
+AQASS +GK +
Sbjct: 78 ---AMAQASSNQLGTAALVGKEV 97
>gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
noxia ATCC 43541]
gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
noxia ATCC 43541]
Length = 174
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75
K LG+DAFL+LL+TQ+K+QDP +P SE ++QLA FS +EQ ++ L E+ K
Sbjct: 34 KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93
Query: 76 -----SNNLAQASSYIGKNI 90
S + Q SS IG+ +
Sbjct: 94 DNINSSVLIGQLSSMIGQPV 113
>gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
Length = 226
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 21/121 (17%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K LGQD FL LL+ Q+++QDP P A+E AQLA +SQ+EQ +N + EL + +
Sbjct: 20 KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79
Query: 81 Q---ASSYIGKNIT-----------------NADGSISGVVNAIQVSSTGLTAITVDNTE 120
Q S IG+++ DGS+SG+ I+ +S+G T T+ ++
Sbjct: 80 QNISTLSLIGQDVVVEGAKFTLGEAPVQIGYKVDGSVSGLSIFIK-NSSGKTVATLSASD 138
Query: 121 I 121
+
Sbjct: 139 L 139
>gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis
L1-82]
gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis
L1-82]
gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1]
Length = 251
Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ SN A
Sbjct: 28 LGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIE---SSNANALV 84
Query: 83 SSYIGKNITNADG---SISGVVNAIQ 105
Y+ T++ G + G V+ +Q
Sbjct: 85 GKYVIIKTTSSTGETTATEGFVDYVQ 110
>gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus
1942]
gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus
1942]
Length = 142
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81
LG+D FLK+L+ Q+++QDP P+ E ++Q+A FS +EQ + +N+T+ + + +
Sbjct: 26 LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85
Query: 82 ASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVDNTEI 121
++IGK+++ ++G +G V++++ S + D EI
Sbjct: 86 YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEI 129
>gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601]
gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601]
Length = 145
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 72/117 (61%), Gaps = 7/117 (5%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78
+L +D F+KL +T +++QDP+ P+ ++ ++Q++ + MEQ M+S + +L +S+
Sbjct: 29 SLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAVNKLSDQAQSSA 88
Query: 79 LAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDN-TEIPITTGIRISN 131
+ A +IGK+I N +G +SG+V +IQ ++ G+ DN T +P+T ++N
Sbjct: 89 MQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPLTYITEVNN 145
>gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus
degradans 2-40]
gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40]
Length = 238
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
NPT+ + LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N
Sbjct: 21 NPTEPQ------SNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLN 74
Query: 68 STLQELLKS---NNLAQASSYIGKNIT 91
+ S N QAS+ +G+++T
Sbjct: 75 NNFDSFANSFVANQALQASTLVGRSVT 101
>gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
Length = 202
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
DAFL LL Q+K+QDP P+ +++ V QLA FS +EQ VQ N T+ LL+S Q
Sbjct: 28 DAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFSSLEQQVQTNKYLETMMGLLQSTLGGQQ 87
Query: 83 SSYIGKNITNADGSISGVVNAIQVSS 108
+ IG I ++ +ISG + + + S
Sbjct: 88 TDVIGAQIGASEITISGAFDPLPIVS 113
>gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
Length = 225
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L
Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTL- 77
Query: 75 KSNNLAQASS-------YIGKNI 90
+AQASS +GK +
Sbjct: 78 ---AMAQASSNQLGTAALVGKEV 97
>gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
51333]
gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
51333]
Length = 254
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM ++ ++ AQ
Sbjct: 70 LGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTEASKKSFEAQQRAQG 129
Query: 83 SSYIGK----NITNADG---SISGVVNAIQVSSTG 110
++ +GK + +A G + +G ++A++ + G
Sbjct: 130 TTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADG 164
>gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 254
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM ++ ++ AQ
Sbjct: 70 LGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTEASKKSFEAQQRAQG 129
Query: 83 SSYIGK----NITNADG---SISGVVNAIQVSSTG 110
++ +GK + +A G + +G ++A++ + G
Sbjct: 130 TTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADG 164
>gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 225
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+ + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L L
Sbjct: 19 APAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKLDTLA 78
Query: 74 ---LKSNNLAQASSYIGKNI 90
SN L A + +GK +
Sbjct: 79 VAQASSNQLGTA-ALVGKEV 97
>gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative
[Roseobacter litoralis Och 149]
gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative
[Roseobacter litoralis Och 149]
Length = 226
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FLK+L Q + QDP EP+ +SE AQLA FS +EQ V N L EL L SN++ Q ++
Sbjct: 33 FLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGAQLGSNSIGQMAA 92
Query: 85 YIG 87
+IG
Sbjct: 93 WIG 95
>gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter
denitrificans OCh 114]
gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative
[Roseobacter denitrificans OCh 114]
Length = 226
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FLK+L Q + QDP EP+ +SE AQLA FS +EQ V N L EL L SN++ Q ++
Sbjct: 33 FLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGAQLGSNSIGQMAA 92
Query: 85 YIG 87
+IG
Sbjct: 93 WIG 95
>gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
Length = 239
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
S LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N+
Sbjct: 30 SGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSSVEGLERLNTNFDSFTSSFI 89
Query: 76 SNNLAQASSYIGKNIT 91
SN QASS +G++++
Sbjct: 90 SNQALQASSLVGRSVS 105
>gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
Length = 222
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82
D FL LL Q+++QDP EP ++E QL FS +EQ +Q N L++L+ SNN A
Sbjct: 30 DTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQIQTNDALEQLIASNNSATGAAM 89
Query: 83 SSYIGKNI 90
SSY+G+++
Sbjct: 90 SSYLGQSV 97
>gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium
BAC17H8]
Length = 231
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 13/119 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++E + SK TLGQ FLKL+ TQ+++QDP PM+ +E +AQ+A FS + +M + L
Sbjct: 23 KKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEMGTEL 82
Query: 71 Q---ELLKSNNLAQASSYIGK------NITNAD--GSISGVVNAIQVSSTGLTAITVDN 118
+ E L +A A++ +G N AD G I G++ S++G+T +T N
Sbjct: 83 KAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIEL--PSASGITNLTFSN 139
>gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
Length = 144
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQEL 73
S + K LG++ FL+LL+ Q+K+QDP PM ++ V+Q+A FS +EQ + TL L
Sbjct: 23 STASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMTNVADAIVTLTSL 82
Query: 74 LKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ L Q S+ IGK GS +G VN+I++ L + VD+ + + ++
Sbjct: 83 YSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRIQDNVL-QVQVDDQWVDLGNILQ 141
Query: 129 IS 130
+S
Sbjct: 142 VS 143
>gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter
desulfuricans SSM1]
gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter
desulfuricans SSM1]
Length = 221
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77
KK L +D FL LL+TQ+K+QDP P+ SE +AQ FS +EQ + ++ +L+ +
Sbjct: 23 KKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLEQLINISEKFDKLIDNEES 82
Query: 78 ---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
NL A S+I K I S N + D + P TT I I N
Sbjct: 83 SNLNLFSAVSFIDKTINFYGNDFSADENG--------ALLRFDISGTPATTNIEIYN 131
>gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
43243]
gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
43243]
Length = 199
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NTE + L +DAFL+LL+ ++++QDP EP +E VAQLA F+Q+E+
Sbjct: 12 LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGK----NITNADGS---ISGVVNAIQVSSTGLTAIT 115
+Q + S QA++ +GK N A G+ + GVV+ I V+S G T +
Sbjct: 72 -------MQNMANSMAQNQANALVGKTVIMNTITASGTTSYVGGVVDRI-VNSNGKTYVG 123
Query: 116 VDNTEIPI 123
++ + I
Sbjct: 124 INGSLYDI 131
>gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 145
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ + +++ LGQD F+K+L TQ++HQDP +PM E + Q+ F+Q++Q L
Sbjct: 19 QQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQ-------L 71
Query: 71 QELLKSNNLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
Q L ++ + + +G+++ N DG I G V AI+ G +D ++ +
Sbjct: 72 QSLNETQEQSSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKVDFEDVV 130
Query: 128 RI 129
I
Sbjct: 131 EI 132
>gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
Length = 186
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S +KK+L + F+ LL+ Q+K+QDP+ PM +E +AQ + ME+ M T+ E
Sbjct: 30 STAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEKLTTMTDTIAESFAL 89
Query: 77 NNLAQASSYIGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPI 123
A++ +GK + T ADG++ +GV ++ + + + VD E+ +
Sbjct: 90 QMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYS-VPMVVVDGVEVTL 138
>gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
Length = 222
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 11/87 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
QD FLKLLITQ+K+QDP +P+ +E +QLA S + ++NSTLQ+L+ S + ++
Sbjct: 30 QDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGIDKLNSTLQQLVSSADDGRSIE 89
Query: 83 -------SSYI-GKNIT-NADGSISGV 100
S+Y+ GK+IT +G+I+G+
Sbjct: 90 ALEMIGHSAYVPGKSITLEGEGAIAGI 116
>gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
Length = 297
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 16/109 (14%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D F+ LL+TQ+++QDP P ++ +AQ+A FS +EQ +Q L S + QA
Sbjct: 32 LGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQ-------MQNLNTSYSATQA 84
Query: 83 SSYIGK----NITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPI 123
IGK N+ + D S I+G V ++++ S G + V+ +IP+
Sbjct: 85 FGMIGKTVTANLKDGDSSKTNTITGEVTSVKMQS-GKAYVIVNGNDIPV 132
>gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 135
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 13/93 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG++ +L+LL+TQ+++QDP PM E +AQ+A FS +EQ + +N++ N +A
Sbjct: 28 LGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQMLNLNNSF-------NAVKA 80
Query: 83 SSYIGKNIT---NADGS---ISGVVNAIQVSST 109
S +GK I+ +++GS I+G V+A++ +
Sbjct: 81 YSLLGKTISANIDSNGSSSTITGKVDAVKFDGS 113
>gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
Length = 221
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-KSNNLA- 80
+ +D FLKL +TQ+++QDP P +S+ ++QLA +Q+EQ+ NS LQ++L ++NN
Sbjct: 24 MNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQVEQAYNTNSNLQDMLNQANNTTT 83
Query: 81 -QASSYIGKNI 90
A S+IGK +
Sbjct: 84 LSAVSFIGKEV 94
>gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium HdN1]
gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium HdN1]
Length = 237
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 11/111 (9%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE-- 72
S KS +D F++L++ Q+KHQ+P +P +E VAQLA FS +E +N ++++
Sbjct: 33 SPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSVKDIT 92
Query: 73 -LLKSNNLAQASSYIGKNITNADGSIS--------GVVNAIQVSSTGLTAI 114
+ +S+ QA++ +G+ + S++ GV+NA Q +S + I
Sbjct: 93 SMYRSSQTLQATALVGREVLVDGDSVAFDGKNAALGVINAGQAASNAVMTI 143
>gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum
AIU301]
gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum
AIU301]
Length = 253
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL +L TQ+++QDPT PM +S+ ++L FSQ+EQ + N +L +LL ++ +L QASS
Sbjct: 66 FLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGDLTQASS 125
Query: 85 YIGKNIT 91
+G +T
Sbjct: 126 MLGSKVT 132
>gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus
Nitrospira defluvii]
gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus
Nitrospira defluvii]
Length = 101
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ P + K LG+D FLKLL+TQ++HQDP +PM+ + VAQ A FSQ+EQ
Sbjct: 13 TQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQFSQLEQMS 72
Query: 65 QMNSTLQE 72
++ S +++
Sbjct: 73 KLVSLMEK 80
>gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
Length = 282
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79
LGQDAFL + + Q+ +Q+P +PM +E AQLA FSQ+E+ Q+ +++ +L S +
Sbjct: 28 LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87
Query: 80 AQASSYIGKNIT 91
+ A Y+GK +T
Sbjct: 88 SVALGYLGKEVT 99
>gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
japonicus Ueda107]
gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
japonicus Ueda107]
Length = 231
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
++ LGQ AFL+L+I Q+ +Q+P P +E VAQLA FS +E ++N + + SN
Sbjct: 24 RNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNKSFNSFM-SN 82
Query: 78 NLAQASSYIGKNIT 91
N QASS +G++++
Sbjct: 83 NALQASSLVGRSVS 96
>gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
Length = 231
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQA 82
D F+KLL Q K+QDPTEPM +E +QLA FS +EQ V N L E L N+A
Sbjct: 31 DTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQQVLTNDNLGSALEQLGLGNMAAL 90
Query: 83 SSYIGKNITNA 93
+ ++G + A
Sbjct: 91 TGWVGMEVRAA 101
>gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
Length = 152
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++ + LG+D FLKLLI Q+++QDP P +E + Q+ FS +EQ + T Q +
Sbjct: 20 TRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSILEQITNLGQTTQAAASN 79
Query: 77 NNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSSTGLTAITVD 117
+ AQA IG+ ++ N DG S +G V ++ +S+G +T+D
Sbjct: 80 DYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSSG-PQLTID 129
>gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF]
gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF]
Length = 134
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 9/98 (9%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QE 72
K K+ L +DAFLKLL+TQ+ +QDP PM+ E ++Q+A FS +EQ +N L +E
Sbjct: 19 KKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLKDTKE 78
Query: 73 LLK------SNNLAQASSYIGKNITNADGSISGVVNAI 104
LL +NNL ++ + I + + I+ V+N I
Sbjct: 79 LLADHITQMNNNLVKSQTTIADQLDLMNIQINKVLNHI 116
>gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
Length = 248
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL----K 75
KK + +DAFL L+ITQ+++QDPT P S+ +AQ A FSQ+EQ M + + L+ +
Sbjct: 27 KKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVDRLVAMQQQ 86
Query: 76 SNNLAQASSYIG 87
+ N A++YIG
Sbjct: 87 TMNF-NAAAYIG 97
>gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51]
gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 193
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 59/97 (60%), Gaps = 10/97 (10%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE------ 72
+K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++
Sbjct: 31 TKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVGAFG 90
Query: 73 -LLKSNNLAQASSYIGKNIT--NADGSI-SGVVNAIQ 105
L +++ L+Q ++ IGK + N +G I G+V ++Q
Sbjct: 91 ALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQ 127
>gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
Length = 225
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D F+ LL T++++QDPTEP+ ++ V Q+ +SQ+EQ +MN TL + L + ++
Sbjct: 32 DDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLTEMNEKMDTLTDALDAQGISSG 91
Query: 83 SSYIGKNITNADG 95
Y+GK + ADG
Sbjct: 92 LDYLGKEV-EADG 103
>gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1]
Length = 237
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104
++ M ++ + A S +GK + +A G SG V+ +
Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121
>gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629]
Length = 237
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 5 TEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ + S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAI 104
++ M ++ + A S +GK + +A G SG V+ +
Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYV 121
>gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 241
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 16/90 (17%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ---------SVQM 66
+ + LG+ FLKLLITQ+++QDP +PM E VAQLA FS +EQ S+
Sbjct: 24 RDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEGMESMNE 83
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGS 96
N QE+L A +IGK I ADG
Sbjct: 84 NQARQEMLG------AVGFIGKEIR-ADGD 106
>gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
Length = 220
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75
+ + K G+D FLK+LI Q+++Q+P P+ ++ AQLA FS +EQ MNSTL+ L
Sbjct: 18 TSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQLTNMNSTLESLSAL 77
Query: 76 --SNNLAQASSYIGKNIT 91
+ N A++ IG+ ++
Sbjct: 78 QTTQNGIMAANLIGRQVS 95
>gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas
flueggei ATCC 43531]
gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas
flueggei ATCC 43531]
Length = 168
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + SK LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L+
Sbjct: 22 QAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGLE 81
Query: 72 ELLK-------SNNLAQASSYIGKNI 90
++ K S + Q SS IG+ I
Sbjct: 82 KVSKIVDNIDSSVLIGQLSSMIGQPI 107
>gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM
2782]
gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM
2782]
Length = 286
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+Q + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ MN ++
Sbjct: 23 KQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMNGSM 82
Query: 71 QELLKSNNLAQASSYIGKNIT 91
+ +QA + IGK IT
Sbjct: 83 TK-------SQAFTLIGKVIT 96
>gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
Length = 142
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L
Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78
Query: 75 --KSNNLAQASSYIGK 88
+++ + + S IGK
Sbjct: 79 QSQASPILKGSELIGK 94
>gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium
modesticaldum Ice1]
gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium
modesticaldum Ice1]
Length = 188
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
KS LG+D FLKLL+TQ+++QDP +PM+ E +AQ+A FS +EQ
Sbjct: 22 KSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLEQ 66
>gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
Length = 175
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N T S + +K +D FLKLL+ Q+K+QDP++P ++ +AQ A FS +E ++
Sbjct: 31 ANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQEV 90
Query: 67 NSTLQELLKSNNLAQASSYIGK--NITNADGSI-SGVV 101
++ +L + N QAS+ IG+ + T DG+ SGVV
Sbjct: 91 AASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVV 128
>gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
Length = 270
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L +DAF+ LL+TQ+K+QDP +P+ SE +AQLA F+ +EQ + + Q+ L +
Sbjct: 23 KEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQLANG 82
Query: 78 NLAQASSYIGKNI-TNADGSISGVVNAIQVSS 108
+ + Y+ K+ T + G V+ ++VS
Sbjct: 83 MIGKYVEYLYKDSETGTSEYLVGKVDYVKVSG 114
>gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399]
gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399]
Length = 176
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L
Sbjct: 22 QEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGLS 81
Query: 72 ELLKSNNLAQASSYIGK 88
++ K + +S IG+
Sbjct: 82 DVQKVVDNINSSVLIGQ 98
>gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 180
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L
Sbjct: 26 QEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGLS 85
Query: 72 ELLKSNNLAQASSYIGK 88
++ K + +S IG+
Sbjct: 86 DVQKVVDNINSSVLIGQ 102
>gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
Length = 245
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ K T + FL LL +Q+K+QDP PM ++E QL F+Q+EQ + N +++LL +
Sbjct: 24 RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83
Query: 78 NLAQAS---SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+QA+ Y+GK + A+ ++ + + V + GLTA DN I +
Sbjct: 84 GNSQAAMAVGYLGKYV-EAESTVVALQDGQAVFTYGLTA-AADNVTIAL 130
>gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
Length = 219
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQASSY 85
FL LL Q+K+QDP PM ++E +QL +S +EQ ++ N L L+ +L+ A +Y
Sbjct: 31 FLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSAVNY 90
Query: 86 IGKNIT 91
IGK+IT
Sbjct: 91 IGKSIT 96
>gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
Length = 142
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L
Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78
Query: 75 --KSNNLAQASSYIGK 88
+++ + + S IGK
Sbjct: 79 QSQASPILKGSELIGK 94
>gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
Length = 128
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
L +D FLKLL+TQ+++QDP EPM +E +AQLA FS +EQ +N
Sbjct: 23 LDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSLEQMQNLN 67
>gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
Length = 225
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 15/116 (12%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
K+ LG+DAF++L++ Q+K+Q+P EP + +AQLA FS +E+ ++ ++ ++
Sbjct: 22 GKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVDDVV 81
Query: 74 --LKSNNLAQASSYIGK--------NITNADGSISGVVNAIQV-SSTGLTAITVDN 118
+S+ QAS+ +GK I ++G I+G IQV +STG ++V N
Sbjct: 82 GQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGT---IQVPASTGGLRLSVMN 134
>gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
Length = 145
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K KS + LG D FL+L+IT++ +QDP PM ++ V Q+ ++ + +++ TL +L
Sbjct: 21 KPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASNDKLSRTLDSVLT 80
Query: 76 SNNLAQASSYIGKNITNAD---GSISGVVNAIQV 106
+L AS IG+ +T D ++ G+V+ + +
Sbjct: 81 GQSLTTASGLIGREVTALDLNNENVEGIVDRVSI 114
>gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13]
Length = 217
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S +G+D FL+LLI Q+++QDP PM+ E +AQ+A FS +EQ +N +++ + +
Sbjct: 19 SNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQMANLNKSMEGFIDT 78
Query: 77 NNLAQASS---YIGKNIT 91
N S Y+G +T
Sbjct: 79 QNKMNVLSLQQYLGSELT 96
>gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
Length = 231
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T+ + + + K +LGQD FLKL+ TQ+ HQDPT+PM+ + + Q+A F + + +
Sbjct: 17 TKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVSGIQDLQKS 76
Query: 70 LQELLKSNNLA---QASSYIG--------KNITNADGSISGVVN 102
+ S N + QA+S +G K + A G I+G +N
Sbjct: 77 FGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNIN 120
>gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp.
SK209-2-6]
gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp.
SK209-2-6]
Length = 228
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D F+KLL Q ++QDP EPM +E +QLA FS +EQ V N ST+ E L N+A
Sbjct: 33 DTFIKLLTAQAQYQDPLEPMDNTEYASQLAEFSMVEQQVLTNTNLSTVHEQLGLGNMASL 92
Query: 83 SSYIGKNI 90
+ ++G +
Sbjct: 93 TGWVGMEV 100
>gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
Length = 136
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+ T+G + FL++ +TQ+ QDP EP+ E +AQLA FS +E + + N ++ LL ++
Sbjct: 18 QNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQSV 77
Query: 80 AQASSYIGKNI 90
AQ IGK +
Sbjct: 78 AQTVGLIGKTV 88
>gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
Length = 262
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E +N+T+ + L+S+
Sbjct: 30 LGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGLENLNTTVDSMSDGLRSSQA 89
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 90 LQASSLVGQSV 100
>gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
49176]
gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
49176]
Length = 317
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 14/91 (15%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+D+FLKLL Q+++QDP +P +E V+QLA +S +EQ +N+T+ +QA
Sbjct: 44 LGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIAN-------SQA 96
Query: 83 SSYIGKNIT----NADG---SISGVVNAIQV 106
IG+ + ++DG ++SG V+ + V
Sbjct: 97 YGLIGQEVVMAAKDSDGHETTVSGKVDFVSV 127
>gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
13855]
gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
13855]
gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
Length = 260
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81
LG++ FLKLL TQ+++QDP+ PMK + AQLA FS +EQ ++ ++E KS+ LAQ
Sbjct: 61 LGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGKSDGALAQ 120
Query: 82 ------ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
A+ IG+ + + N +Q + G VD
Sbjct: 121 SINDSMATDLIGRTVKTSG-------NTLQWTGEGEATFGVD 155
>gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
Length = 230
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 18 KSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ KKT G + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ +
Sbjct: 23 EPKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGI 82
Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107
L N+A S ++G +A + N + VS
Sbjct: 83 QAQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVS 119
>gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila str. Corby]
gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 2300/99 Alcoy]
gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila str. Corby]
gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 2300/99 Alcoy]
Length = 225
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNI 90
L+SN QAS+ +G+ +
Sbjct: 82 LQSNQALQASALVGRKV 98
>gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis
2.10]
gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis
2.10]
Length = 230
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 18 KSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ KKT G + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ +
Sbjct: 23 EPKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGI 82
Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107
L N+A S ++G +A + N + VS
Sbjct: 83 QAQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVS 119
>gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella
pneumophila str. Paris]
gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella
pneumophila str. Paris]
Length = 225
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNI 90
L+SN QAS+ +G+ +
Sbjct: 82 LQSNQALQASALVGRKV 98
>gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
turnerae T7901]
gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
turnerae T7901]
Length = 238
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LGQ AFL+L+ITQ+++QDP P + +E +AQLA FS +E ++N+ +N
Sbjct: 30 LGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNNNFDSFTNNFMANQA 89
Query: 80 AQASSYIGKNIT 91
QAS+ +G+++T
Sbjct: 90 LQASTLVGRSVT 101
>gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella
pneumophila str. Lens]
gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella
pneumophila str. Lens]
gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 130b]
Length = 225
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNI 90
L+SN QAS+ +G+ +
Sbjct: 82 LQSNQALQASALVGRKV 98
>gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri
DSM 4166]
Length = 227
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 11 QQEFSKSKSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q +F + + K LG++ FL+LL+ Q+ +Q+P EP + E + QLA FS +E ++NS
Sbjct: 16 QYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVEKLNS 75
Query: 69 TLQELL---KSNNLAQASSYIGKNI 90
++Q +L +S+ QASS +G+ +
Sbjct: 76 SMQTILSGYQSSQALQASSLVGRKV 100
>gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 225
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNI 90
L+SN QAS+ +G+ +
Sbjct: 82 LQSNQALQASALVGRKV 98
>gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
DSM 4359]
gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
DSM 4359]
Length = 223
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--- 75
+ KTL +DAFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++
Sbjct: 22 ASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQT 81
Query: 76 SNNLAQASSYIGKNI 90
S N AQ +S IGK +
Sbjct: 82 SVNPAQLASLIGKYV 96
>gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893]
gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893]
Length = 224
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 32/132 (24%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQE + S+ LG++ F++L+I Q+K+Q+P EP E ++QLA FS +E+ ++ ++
Sbjct: 19 QQEQTAKGSE--LGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLEEMQSLSGSV 76
Query: 71 QEL---LKSNNLAQASSYIGK--------NITNADGSISGVVNAIQVSSTGLTAITVDNT 119
++ +S QAS+ +G+ + ADG ISG N
Sbjct: 77 DDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISG------------------NV 118
Query: 120 EIPITT-GIRIS 130
+P TT G+RIS
Sbjct: 119 SVPATTSGLRIS 130
>gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length = 336
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 70 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 129
Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110
+ ++ Q +S +G+ ++ + +G + +G V+A++ + G
Sbjct: 130 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 179
>gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD
[Gemmatimonas aurantiaca T-27]
gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD
[Gemmatimonas aurantiaca T-27]
Length = 267
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+G+D FLK+L+ Q+K+QDP PM + AQLA FS +EQ ++MN +L
Sbjct: 50 MGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESL 97
>gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
Length = 140
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K LG+D FLKLL Q+++QDP P+ ++ +AQ+A FS +EQ + + E L +
Sbjct: 21 KGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL----ML 76
Query: 81 QASSYIGKNITNA--DGSISGVVNAIQVSSTGL 111
QA IGK +T D +++G V+ + S G+
Sbjct: 77 QAVGLIGKEVTARINDQTLTGTVSKVNWSPEGI 109
>gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
Length = 221
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74
+K K LG++ FL LL+ Q+ +Q+P EP E +AQLA FSQ+E ++N+++ +L
Sbjct: 20 TKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGIEKLNTSMGSMLSS 79
Query: 75 -KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 80 FQSSQALQASSLVGRKV 96
>gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
35239]
gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
35239]
Length = 334
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 68 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 127
Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110
+ ++ Q +S +G+ ++ + +G + +G V+A++ + G
Sbjct: 128 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 177
>gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046]
Length = 231
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
LG+DAFLK+LITQ+++QDPT PM E ++Q+A FS +EQ M ++
Sbjct: 29 LGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNMTKAME 77
>gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
Length = 236
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
F++L I Q+K+QDPT P + + V+Q+A FS +EQ M+ST + E L S+ AS+
Sbjct: 48 FMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQALTAST 107
Query: 85 YIGKNIT------NADGSISGVVNAIQVSSTGLTAITVDNTE 120
+GK++ + DGS + A S + T +T+ +++
Sbjct: 108 LVGKSVYVDQDTISYDGSTDAYIKATIPSDSSATTVTITDSD 149
>gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 174
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75
K LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L+++ K
Sbjct: 34 KDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGLEKVSKIV 93
Query: 76 -----SNNLAQASSYIGKNI 90
S + Q SS IG+ I
Sbjct: 94 DNIDSSVLIGQLSSMIGQPI 113
>gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
Length = 225
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 12/98 (12%)
Query: 16 KSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
KS ++K LG++ F+ L+I Q+ +Q P +P + VAQLA FS +E +NST+ +
Sbjct: 22 KSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLAQFSSVEGIQSLNSTVDTMA 81
Query: 74 --LKSNNLAQASSYIGKN--------ITNADGSISGVV 101
+S QAS+ +G++ I +ADGSI+GVV
Sbjct: 82 SQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVV 119
>gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
Length = 221
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQ 71
SK KS +LGQ FL+L+ Q+KHQDP PM+ S + Q+A FS ++ +NS Q
Sbjct: 20 SKDKSD-SLGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQGIETLNSQVRAFQ 78
Query: 72 ELLKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAITVDN 118
L S+ L + ++ +G+++ + GS G V A +Q + T TV
Sbjct: 79 SALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQFTVTDANGRTVRE 138
Query: 119 TEIPIT 124
+P T
Sbjct: 139 FSVPAT 144
>gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
Length = 374
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 99 QRTDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 158
Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110
+ ++ Q +S +G+ ++ + +G + +G V+A++ + G
Sbjct: 159 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 208
>gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 236
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
KSKS L Q FL LL+ Q++HQDP PM+ + AQLA FS +EQ ++N ++ L
Sbjct: 22 KSKSG-ALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSLEQLNKINEGIEGLNS 80
Query: 76 S---NNLAQASSYIGKNI 90
S ++ A S+IGK+I
Sbjct: 81 SAGRQDMLGAVSFIGKDI 98
>gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
Length = 143
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 16/113 (14%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
KS K L QD FLKLL Q+++Q+P +PM +AQ+A FS +EQ M++ L
Sbjct: 20 KSAK-LRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSSLEQMQNMSANL------- 71
Query: 78 NLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++AQA + IGK + ISG V++++ S+ G +TV ++P+
Sbjct: 72 SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKFSN-GQAILTVGAVDVPL 123
>gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
Length = 335
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 12 QEFSKSKSKK----TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
Q K+++KK LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 63 QRTDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMT 122
Query: 68 STLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTG 110
+ ++ Q +S +G+ ++ + +G + +G V+A++ + G
Sbjct: 123 EASKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEG 172
>gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
Length = 218
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
ME+++ +PT S T + FL++L TQ+++QDP PM++ + QLA FS +
Sbjct: 1 MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGK 88
EQ V+ N L + + L++ + +IG+
Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGR 91
>gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
Length = 224
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---SQMEQSV 64
+P +++ + + Q FL++L Q++HQDP EPM+ +E +QLA F SQ + S
Sbjct: 14 DPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQNST 73
Query: 65 QMNSTLQELLK--SNNLAQASSYIGKNI 90
Q+ L EL+ ++ + QA +YIG+ +
Sbjct: 74 QLLQQLVELMSGGTDQVGQAVAYIGREV 101
>gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 134
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
QD FLKLL+ Q+K+ P P + + Q A F +E+ V++ L+E+ ++ LAQA+
Sbjct: 28 QDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLERLVKVEEALREMSRAAYLAQAAE 87
Query: 85 YIGKNIT--NADGSISGVVNAIQVSSTG 110
+G+ + D ISG V + ++ G
Sbjct: 88 IVGREVVVLAGDRQISGTVERVLLNERG 115
>gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium
'Dutch sediment']
Length = 234
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 10/92 (10%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S + LG+DAFLKLL+ Q+++Q+P P++ ++ +AQ A F+ +EQ Q+N+++ +L
Sbjct: 21 TSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQTAQFTSLEQLQQINASIAQLS 80
Query: 75 KSN---------NLAQASSYIGKNITNADGSI 97
S+ + ASSYIGK +T A+G+I
Sbjct: 81 ASSAATSGSNSLDAVLASSYIGKVVT-ANGTI 111
>gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim
5]
Length = 61
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS
Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61
>gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
Length = 218
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L
Sbjct: 25 KSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASELTG 84
Query: 77 NNLAQASSYIGKNI 90
+ L A+S+IGK++
Sbjct: 85 SRLGDAASWIGKSM 98
>gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 229
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+
Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 93 LQASSLVGRSV 103
>gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato T1]
gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato Max13]
gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato K40]
gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato T1]
Length = 229
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+
Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 93 LQASSLVGRSV 103
>gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine
bacterium MedDCM-OCT-S09-C247]
Length = 230
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T+Q ++ +K TLGQ FLKL+ TQ+++QDP PM + +AQ+A FS + ++N++
Sbjct: 20 TRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEVNNS 79
Query: 70 LQELLKSNN---LAQASSYIGK------NITNAD--GSISGVVN 102
+ +L+ + +A AS+ +G NI AD G + GV++
Sbjct: 80 IGQLVDEFDQARIATASNLLGHSVLVPGNIGRADEEGQLHGVLD 123
>gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium
japonicum UT26S]
gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium
japonicum UT26S]
Length = 218
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L
Sbjct: 24 GKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASELT 83
Query: 76 SNNLAQASSYIGKNI 90
+ L A+S+IGK++
Sbjct: 84 GSRLGDAASWIGKSM 98
>gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
10331]
gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 159
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL LL+T++++Q+P PM S+ V+Q + S++E + S L ++ S + ASS IG
Sbjct: 31 FLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGILSASSLIG 90
Query: 88 KNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+++T DGS ++G V+ + S+ G+ + V +PI I +
Sbjct: 91 QSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAV 133
>gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative
[Rhodospirillum centenum SW]
gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative
[Rhodospirillum centenum SW]
Length = 219
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 23 LGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L QD +FLKLL Q+ +QDP P+ A++ V QLA FS +EQ+VQ N+ L E+ L+S+
Sbjct: 24 LAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAVQSNTRLAEVLGELRSS 83
Query: 78 NLAQASSYIGKNI 90
+ +Y+G+ +
Sbjct: 84 SERLDLAYVGRTV 96
>gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
Length = 220
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 1 MEINTEVNPTQQEFSKSK---SKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLA 55
MEI+ + P Q S + SK + D FLK+L Q+++QDP P +SE QLA
Sbjct: 1 MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60
Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNI-TNADGSISG 99
FS +EQ+V N L L+ N +AQ + ++GK A G G
Sbjct: 61 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKEARATAPGHFDG 108
>gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM
1251]
gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM
1251]
Length = 221
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K K LG+D F+KLL+ +++HQDPTEPM + + ++Q + + +E S N L EL S
Sbjct: 23 KDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEASENTNKALSELAASM 82
Query: 78 NLAQ 81
+ +Q
Sbjct: 83 SASQ 86
>gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
B316]
gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
B316]
Length = 237
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N EV T +E + + +D+FLK+L+ Q+K+QDP EP +E + Q A F+Q+EQ
Sbjct: 13 NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQ- 71
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI 90
L + S L++AS +GK +
Sbjct: 72 ------LSNMANSMALSRASEMVGKTV 92
>gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
HTCC2516]
gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
HTCC2516]
Length = 222
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS----NNLAQAS 83
FLK+L Q+ +QDP PM +S V QLA SQ+EQ+VQ N L+ELL ++A+
Sbjct: 31 FLKMLTAQVTNQDPLAPMDSSTFVTQLAQLSQVEQTVQSNGHLRELLAGVQSFGSMAEV- 89
Query: 84 SYIGKNITNADGSIS 98
IGK +T A IS
Sbjct: 90 QLIGKPVTYASDRIS 104
>gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum
gryphiswaldense MSR-1]
Length = 226
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQA 82
D FL +L Q+K+QDP PM ++E QL FS +EQ + N L+ L+ ++N AQA
Sbjct: 27 DTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIASNKNLENLISVTQTNTKAQA 86
Query: 83 SSYIGKNI 90
+YIG I
Sbjct: 87 IAYIGHTI 94
>gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp.
5_7_47FAA]
gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp.
5_7_47FAA]
Length = 218
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ +L N QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNATTQASS 89
Query: 85 YIGKNI 90
IG+++
Sbjct: 90 MIGRSV 95
>gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter
concisus 13826]
gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826]
Length = 235
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L +DAF+KLL+T+++HQDPT PM + + Q + + +E N ++EL LKSN
Sbjct: 39 LDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAMKELVNQLKSNAN 98
Query: 80 AQASSYIGKNITNADGSIS 98
A A S +GK ++ +++
Sbjct: 99 AYAISALGKMVSTGSNAVT 117
>gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
Length = 132
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K L ++AFL+L + Q+K+QDP P ++ + QL+ FS +EQ +N + + L
Sbjct: 22 KALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSMLEQLASLNEEVTLARRFQELG 81
Query: 81 QASSYIGKNIT--NADGSISGVVNAIQV 106
+A++ +G+ + DG +SG V + V
Sbjct: 82 EAAALLGRQVKVQTGDGDVSGQVEKVAV 109
>gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
ATCC 49957]
gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
ATCC 49957]
Length = 226
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 19 SKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74
+K LG D +FL LL TQ+++QDP +P +SE QLA FSQ+EQ + N+ L+ LL
Sbjct: 22 AKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQVEQQIATNAHLESLLSL 81
Query: 75 -KSNNLAQASSYIGKNI 90
+S +L ++ +G +
Sbjct: 82 QQSASLLSSTGLVGNTV 98
>gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2080]
gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2080]
Length = 239
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 7 VNPTQQ-EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+NPT+ E K+ S + +G + FL+L+I Q+++QDPT+PM ++QLA F+Q+ +
Sbjct: 19 LNPTRAAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQE 78
Query: 66 MN---STLQELLKSNNLAQASSYIGKNIT 91
+N S L E L QAS +G++++
Sbjct: 79 LNESFSGLTETLTGQQALQASQMVGRSVS 107
>gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
Length = 230
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ + + L ++AFL+LL+TQ+++QDP P+ + E AQLA FS +EQ + +N TL
Sbjct: 22 APAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGINETLA--- 78
Query: 75 KSNNLAQASSY--IGKNITN--ADGSISGVVNA 103
AQ+ +Y + + I N A G + V+ A
Sbjct: 79 -----AQSDAYAALAQGIHNSVAAGLVGKVIEA 106
>gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
Length = 142
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 5 TEVNPTQQEF-----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
T + P +F S K+ +D F+KLL+ QI +QDP PM+ E +AQ+A FS
Sbjct: 2 TSIQPKTNDFTLPDQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSS 61
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSY---IGKNIT----NADGSISGVVNAIQVSSTGLT 112
+EQ ++ L +L +++ S Y IGK I ++ + G + +S LT
Sbjct: 62 LEQMQAISKQLDSVLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLT 121
Query: 113 AITVD 117
D
Sbjct: 122 GYMAD 126
>gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp.
SE45]
gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp.
SE45]
Length = 222
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 15 SKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ S +K L D FLK+L TQ+++QDP P+ +E QLA FS +EQ V N L+E
Sbjct: 18 TASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTNDLLKE 77
Query: 73 L---LKSNNLAQASSYIGK 88
L + N + + +IGK
Sbjct: 78 LTGVIGGNQFQELAGWIGK 96
>gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14]
gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14]
Length = 227
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73
+K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE
Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86
Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+ S+ + + ++ +G K + +GS+ G V A S G+ ITVD T+
Sbjct: 87 MASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAA---PSAGI--ITVDITD 136
>gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans
DSM 16841]
gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans
DSM 16841]
Length = 224
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 18 KSKKT--LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
K KKT LG D FL++L ++++QDP EP +E +AQLA FSQ+E + + ST++
Sbjct: 29 KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE 84
>gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 232
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ + +N T E + ++ +L QD FL++L+ Q++ QDPTEP ++ V Q+ ++Q+
Sbjct: 3 IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
EQ +++ + L + S QA+ YIG +
Sbjct: 62 EQLTNISTAMDTLIAGMASLGATQAAGYIGMGV 94
>gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas
maltophilia K279a]
gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas
maltophilia K279a]
Length = 227
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 19/125 (15%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73
+K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE
Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86
Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
+ S+ + + ++ +G K + +G++ G V A S G+ ITVD T+ T
Sbjct: 87 MASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAA---PSAGI--ITVDITD---AT 138
Query: 126 GIRIS 130
G +++
Sbjct: 139 GAKVT 143
>gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
Length = 225
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
FLKLL TQ+ +QDPT PM +++ QLA FSQ+EQ V+ N+ L L + S Y
Sbjct: 36 FLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMSEY 93
>gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas
mendocina ymp]
gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
Length = 221
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74
++ K LG++ FL LL+ Q+ +Q+P EP E +AQLA FS +E ++N +++ +L
Sbjct: 20 TRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGIEKLNKSMESMLSS 79
Query: 75 -KSNNLAQASSYIGKNI 90
+S+ QASS +G+ +
Sbjct: 80 YQSSQALQASSLVGRKV 96
>gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ]
gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ]
Length = 223
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 20 KKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--K 75
K+T G D AFLKL I QI++QDP P ++ ++Q++ +Q+EQS + L LL +
Sbjct: 22 KQTFGMDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQ 81
Query: 76 SNNLAQAS-SYIGKNI 90
SN+LA +S IGK+I
Sbjct: 82 SNSLALSSVGLIGKDI 97
>gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15]
Length = 225
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 12/100 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG++ F++L++ Q+K+Q+P EP + E ++QLA FS +E+ ++ T++++ +S
Sbjct: 30 LGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLEEMQNLSGTVEDVVGQFRSTQA 89
Query: 80 AQASSYIGK--------NITNADGSISGVVNAIQVSSTGL 111
QAS+ +GK I A+G I+G + + S+ GL
Sbjct: 90 LQASAMVGKTVLAPSQIGILGAEGEITGTIQ-VPASTGGL 128
>gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035]
gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035]
Length = 230
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ FL+LL TQ+++QDP P+++S+ QLA FS +EQ V N L +L L + L+Q
Sbjct: 39 ETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARLGAQGLSQV 98
Query: 83 SSYIG 87
S +IG
Sbjct: 99 SGWIG 103
>gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
Length = 221
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73
+K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S +
Sbjct: 21 AKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80
Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
+ S+ + + ++ +G N+ +A GS GVV A
Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC3088]
gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC3088]
Length = 228
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L +DAFL+L Q+K Q+P +PMK VAQLA FS +E M ++L+ L L++++L
Sbjct: 30 LDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGIKGMQASLETLVSNLRTDSL 89
Query: 80 AQASSYIGKNI 90
SS +GK +
Sbjct: 90 LTGSSLVGKKV 100
>gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula
marina DSM 3645]
gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula
marina DSM 3645]
Length = 169
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FLKL+I ++++QDP EPMK SE + Q+ + + Q+++TL +L N+ A++
Sbjct: 2 DQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATTL 61
Query: 86 IGKNI---TNADGSISGVVNAIQVS 107
IG + T+ + GVV Q++
Sbjct: 62 IGGQVQALTDQGDVVFGVVTGAQIT 86
>gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 221
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73
+K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S +
Sbjct: 21 AKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80
Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
+ S+ + + ++ +G N+ +A GS GVV A
Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia
ubonensis Bu]
Length = 250
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+K+QDPT P+ +S+ +QLA + + Q+NS+L L L + Q
Sbjct: 43 QSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLTSLSTQLTAGQQTQ 102
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 103 AAMLIGTNV 111
>gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
Length = 234
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FLKL I Q+K QDPT P ++ VAQ++ FS +E+ ++ L+ + L SN
Sbjct: 43 QNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQALS 102
Query: 82 ASSYIGKNITNADGS---ISGVVNAIQVSST 109
AS+ +GK+I DGS + V A+Q+ +T
Sbjct: 103 ASTLVGKSIL-MDGSKVKVGDNVEAVQLKAT 132
>gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM
684]
gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM
684]
Length = 220
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ S K LG+ FL+LL+ Q+++QDP EP +E +AQLA FS +EQ N+ L ++ +
Sbjct: 19 TASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVISA 78
>gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36]
gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36]
Length = 237
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
S+K LGQ+ F LL ++ QDP +P++ SE VAQ+A F+ + M S ++L +
Sbjct: 32 SRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKFEQLTTIMS 91
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G +
Sbjct: 92 SNQALQASSLVGTKV 106
>gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 221
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + +
Sbjct: 22 KKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSTSM 81
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
S+ + + ++ +G N+ +A GS GVV A
Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTA 118
>gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t.
morphotype B']
Length = 266
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
LG+DAF+ LLITQ+++QDP PM SE +AQ+A F+ +EQ
Sbjct: 30 LGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQ 69
>gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18]
gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18]
Length = 221
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ N+ LQ LL
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78
Query: 78 NLA---QASSYIGKNI 90
+ A A S IGK +
Sbjct: 79 SNAGTLAAVSLIGKQV 94
>gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
Length = 223
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNL 79
LGQ FLKL+ TQ+++QDP EPM+ E + Q+A FS + +++ + ++L +S +
Sbjct: 27 LGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSFEKLAQSMGQSQT 86
Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
QA+S +GK++ DG + G V Q STG + E+ TG RI
Sbjct: 87 LQAASLVGKDVLVPTDFSELGTDGMVRGAVELDQ--STGQLQV-----EVYSPTGERI 137
>gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11]
gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11]
Length = 228
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASS 84
FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N + +Q L N+A S
Sbjct: 35 FLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAMQAQLGLANMAAMSG 94
Query: 85 YIGKNITNADGSISGVVNAIQVS 107
++G + S N I VS
Sbjct: 95 WVGMETRSTAPSHFDGANPITVS 117
>gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans
621H]
gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans
621H]
Length = 246
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL LL TQ++HQDP+ P A+LA F+ ++Q V+ N+ L L+ + N +A A S
Sbjct: 58 FLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMASAVS 117
Query: 85 YIGKNITNADGSI 97
IGK T + S+
Sbjct: 118 LIGKTTTASSSSL 130
>gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
Length = 238
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQASSY 85
FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L L+ +S NL A++Y
Sbjct: 28 FLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGVEQQLLTNDLLTSLVAAQSGNLNNAAAY 87
Query: 86 IGKNITNA 93
IGK +T A
Sbjct: 88 IGKEVTAA 95
>gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 221
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQEL 73
+K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N S +
Sbjct: 21 AKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80
Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
+ S+ + + ++ +G N+ +A GS GVV A
Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
Length = 219
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78
T+ Q +FLKLL Q+++QDP EP+ +E V+Q+A + +MN+ L + L
Sbjct: 28 TMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGIAEMNANLASIKQELTGTR 87
Query: 79 LAQASSYIGKNI 90
L A+S+IGK++
Sbjct: 88 LGDAASWIGKSM 99
>gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola
batsensis HTCC2597]
gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola
batsensis HTCC2597]
Length = 221
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS--- 83
+FLKLL Q+ +QDP EPM +S V+QLA SQ+EQS+Q N+ L+ + S LA A
Sbjct: 30 SFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLSQVEQSIQTNTHLESI--SGQLANAGLTS 87
Query: 84 --SYIGKNIT 91
IG+ ++
Sbjct: 88 DLGLIGREVS 97
>gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
Length = 226
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG + FLKL+ TQ+ HQDP EPM S + Q+A F + + ++ +EL ++SN
Sbjct: 30 LGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTVSGIQDLQNSFKELSGSMQSNQA 89
Query: 80 AQASSYIGKNI--------TNADGSISGVV 101
QAS +G+++ A+GS+ G V
Sbjct: 90 LQASGLVGRSVLVPSEFGALEAEGSLRGAV 119
>gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
LAA1]
gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
LAA1]
gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 159
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 11/114 (9%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-------STLQEL 73
+L ++ F++LL+TQ+++QDP P+ ++ +AQLA FS +E+ Q+ S +Q L
Sbjct: 41 NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100
Query: 74 LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124
+L A S IG ++T D S + G V+++ ++ G I V+ T P+T
Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLT 153
>gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
Length = 221
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
+D FLKLL+ Q+++Q+P +P ++ +QLA F+ +EQ N+ LQ+L+ +++ +A
Sbjct: 27 KDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQQTSSNALLQQLVDASSTQKATS 86
Query: 83 ---SSYIGKNIT 91
+SY+GKN+T
Sbjct: 87 SNGASYLGKNVT 98
>gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella
drancourtii LLAP12]
gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella
drancourtii LLAP12]
Length = 224
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
K LGQ FL+L++ QI++QDP +P E ++QLA FS + +M ++Q++ L+SN
Sbjct: 25 KNLGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGVSKMQESMQQMANSLQSN 84
Query: 78 NLAQASSYIGKNI 90
QAS+ +G+ +
Sbjct: 85 QALQASALVGRKV 97
>gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 226
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF---S 58
+I ++ T E + +K LGQ FL+L+ITQ+++QDP +PM++ E + QLA F S
Sbjct: 10 DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113
+E + + + + S QA++ + +++T I G+ A+QV ++
Sbjct: 70 GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129
Query: 114 ITVDN 118
I V N
Sbjct: 130 IGVYN 134
>gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 221
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 11/97 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K + LGQ FLKL+ Q++HQDP +PM S + QLA FS ++ +N+ L +
Sbjct: 22 KKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKFSNLSTSM 81
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
S+ + + ++ +G N+ +A GS GVV A
Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas
neptunium ATCC 15444]
gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas
neptunium ATCC 15444]
Length = 216
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
++F+KLL Q+++QDP PM +++ V QLA FS +EQ V N S++ ++ N A
Sbjct: 28 NSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGLMA 87
Query: 83 SSYIGKNITNA 93
S ++G+++T A
Sbjct: 88 SQWLGEDVTFA 98
>gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus
525.92]
gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92]
Length = 235
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L +DAF+KLL+T++++QDPT PM + + Q + + +E NST+++L L+SN
Sbjct: 39 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMRQLVAQLQSNAN 98
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSS 108
A A S +GK ++ +++ + ++SS
Sbjct: 99 AYAISALGKMVSTGSNAVNITDDTKEISS 127
>gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
Length = 232
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
K T+ ++FLKLL Q+++QDP PM A++ + QLA S +EQS++ N TL ++ LKS
Sbjct: 36 KATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDTLKS 95
Query: 77 NNLAQASSYIGKNI 90
+ + + +G+ +
Sbjct: 96 SGMRMDMALLGRKV 109
>gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
Length = 225
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 15/105 (14%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LGQ FL L+ Q+++QDP PM+ E +AQ+A FS + ++N+TL ++ + N +
Sbjct: 32 LGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQIGGNRI 91
Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITV 116
A ASS +G+ + +A G + GV + + +S A+TV
Sbjct: 92 ATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAAS----AVTV 132
>gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium
profundum 3TCK]
gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium
profundum 3TCK]
Length = 238
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQ 71
SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN +L
Sbjct: 31 SKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQFGSLN 90
Query: 72 ELLKSNNLAQASSYIGKN--------ITNADGSISGVV 101
+ S+ QASS +G++ + NA+G I+G+V
Sbjct: 91 SAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMV 128
>gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 221
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + +
Sbjct: 22 KKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSTSM 81
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
S+ + + ++ +G N+ +A GS GVV A
Sbjct: 82 SSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
13965]
gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
13965]
Length = 154
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S L DAF +LL Q+++QDP +PM+ + VAQLA +Q+E++ + + L L
Sbjct: 27 SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85
Query: 75 KSNNLAQASSYIGKN--ITNADGSISGVVNAIQV 106
A +G+ IT A G+ +G V +++
Sbjct: 86 ------SALPLLGRTVEITTAQGTRTGTVTGVRM 113
>gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 292
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 46 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100
>gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601]
gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601]
Length = 224
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FLK+L TQ+++QDP P+ +++ QLA FS +EQ V N L +L + L Q S
Sbjct: 39 FLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVLTNDLLGDLAQAMTGGTLQQLGS 98
Query: 85 YIGKNITNADGSI 97
+IG+++ AD ++
Sbjct: 99 WIGRDVL-ADAAV 110
>gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
Length = 220
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQ 81
++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q
Sbjct: 29 KNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMIMMENLGIVQ 88
Query: 82 ASSYIGKN 89
++S IGKN
Sbjct: 89 SASLIGKN 96
>gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
12885]
gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
12885]
Length = 183
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
DAF +LL Q+++QDP +P++ + VAQLA +Q+E++ + +T+ L L +A +
Sbjct: 72 DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130
Query: 86 IGKNITNADGSISGVVNAIQV 106
+T ADG G V +++
Sbjct: 131 ----VTTADGEQQGTVTGVRL 147
>gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas
cervicalis ATCC 49957]
gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas
cervicalis ATCC 49957]
Length = 231
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS----NNLAQ 81
D FLKLL Q++ QDP P ++ VAQLA FSQ+EQ + N+ LQ + ++ +LA+
Sbjct: 36 DRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQTKTNALLQGIAETLSGQASLAE 95
Query: 82 ASSYIGKNI 90
++ +GK +
Sbjct: 96 NAALLGKAV 104
>gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
Length = 219
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FL +L TQI++QDP +P+ ++E QL +S +EQ+++ N L+E+ L SN S
Sbjct: 30 FLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSMGYVS 89
Query: 85 YIGKNITNADGS 96
YIG +T AD S
Sbjct: 90 YIGNEVT-ADAS 100
>gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2]
gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena
XCL-2]
Length = 227
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LGQ FL+LL TQ+++QDP +PM + V L SQ+E + +MN ++ + L++ +
Sbjct: 32 LGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQLEATTKMNQSMLAMTTGLQNMQV 91
Query: 80 AQASSYIGKNI 90
Q++S IGKN+
Sbjct: 92 MQSASLIGKNV 102
>gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519]
gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii]
Length = 128
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
TE N T+Q S+ LG+DAFL+LL TQ+ HQDP P E ++Q+A FS +EQ
Sbjct: 19 TEKNYTRQVNSE------LGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQ 72
Query: 65 QMNSTLQELLKS 76
+N++ L K+
Sbjct: 73 NLNTSFAGLDKT 84
>gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma
proteobacterium HTCC2207]
gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma
proteobacterium HTCC2207]
Length = 228
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++E + + + LGQDAFL L Q+++Q+P +PM V+QLA FS +E M +L
Sbjct: 18 EKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIKGMQGSL 77
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISG 99
+ ++ + + ++ +GK + A G+ +G
Sbjct: 78 DNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG 109
>gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
Length = 223
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 23 LGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG+D FL LL QI++QDP EP+ +++ VAQLA SQ+EQ+VQ N+ L+ L
Sbjct: 26 LGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQAVQTNTQLETL 78
>gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
Length = 224
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81
QD F+KLL+TQ+++QDP PM ++ +Q+A S + ++N+TL+ L+ + + Q
Sbjct: 33 QDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGIDKLNNTLETLINNVQMGQSYQ 92
Query: 82 ASSYIGKNI 90
AS+ IG+NI
Sbjct: 93 ASNMIGRNI 101
>gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 287
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 46 TLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100
>gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB]
gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB]
Length = 229
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
QD+FL +L TQ+K+QDP PM ++ +QLA S +E +N+TL LL S N +QA
Sbjct: 37 QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQA 94
>gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
Length = 223
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+
Sbjct: 16 TSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTK 75
Query: 70 LQELLKSNNLAQ---ASSYIGKNI--------TNADGSISGVVNA 103
+ S N Q ++ +G N+ +A GS GVV A
Sbjct: 76 VGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAA 120
>gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
Length = 223
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 23 LGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG+D FL LL QI++QDP EP+ +++ VAQLA SQ+EQ+VQ N+ L+ L
Sbjct: 26 LGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQAVQTNTQLETL 78
>gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217]
gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217]
Length = 230
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FLK+L TQ+++QDP P+++S+ QLA FS +EQ V N L +L + + L+Q S
Sbjct: 41 FLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARIGAQGLSQVSG 100
Query: 85 YIG-KNITNADGSISGV-----------VNAIQVSSTGLTAITVDNTEIPITTG 126
+IG + ++ + SG A ++ +T I V+ IP T+G
Sbjct: 101 WIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNAQGIIVNRQPIPTTSG 154
>gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
Length = 136
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+ + Q+ FL++L+ Q+ +QDP EP+ SE ++Q A + + Q+ N L LL ++
Sbjct: 17 RAGIDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTLTQTQSSNDKLDSLLTIQSV 76
Query: 80 AQASSYIGKNI-TNADGSIS-GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA IGK + N+ GS + G V I SS G +TV + G+ +S
Sbjct: 77 NQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTVLRDDGGFINGVGLS 129
>gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155]
gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155]
Length = 220
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84
F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q++S
Sbjct: 32 FMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVMMENLGIVQSAS 91
Query: 85 YIGKN 89
IGKN
Sbjct: 92 LIGKN 96
>gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175]
gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175]
Length = 220
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84
F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E + ++ N + Q ++ N + Q++S
Sbjct: 32 FMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVMMENLGIVQSAS 91
Query: 85 YIGKN 89
IGKN
Sbjct: 92 LIGKN 96
>gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
Length = 227
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81
QD F+KLL+TQ+K+QDP PM ++ +Q+A S + ++N+TLQ L S N Q
Sbjct: 36 QDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSGIDKLNATLQALSASMTPNQTLQ 95
Query: 82 ASSYIGKNI 90
A++ IG+ +
Sbjct: 96 AATMIGRGV 104
>gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus
coahuilensis m4-4]
Length = 94
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
LGQDAF+K+L+ ++++QDP PM+ + +AQLA FSQ+E+ M+ +L
Sbjct: 25 LGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQLEELTGMSDSL 72
>gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter
shibae DFL 12]
gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12]
Length = 220
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ FL++L TQ+++QDP EP+ + + QLA FS +EQ Q NS L++L + +L+Q
Sbjct: 29 ETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGVEQQTQTNSLLEDLGSQMGLMSLSQL 88
Query: 83 SSYIGKNITNADGSI 97
+S++G + A+G++
Sbjct: 89 ASWVGMDAL-AEGNV 102
>gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter
coli RM2228]
gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter
coli RM2228]
Length = 287
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
>gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 222
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQA 82
DAFL+LLI ++++QDPT P +E + Q+A FS +EQ +N T + + L + +L A
Sbjct: 26 DAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLNSA 85
Query: 83 SSYIGKNI 90
S+IG+++
Sbjct: 86 VSFIGQSV 93
>gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
Length = 218
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82
D F+ LL TQI++QDP EP+ +SE QL ++ +EQ V L E LK+ + +Q
Sbjct: 27 DLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQQVATTEKLDEQLTQLKTQSASQF 86
Query: 83 SSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTE 120
+YIGK +T D S ++A+ S G +T+ N+E
Sbjct: 87 VNYIGKEVTAQSSTAQLKDDKASWNLDAV---SAGKATVTIKNSE 128
>gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. B100]
gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 221
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
+K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 21 AKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVGNFSDS 80
Query: 74 LKSNNLAQASSYIGKNI--------TNADGSISGVVNA 103
+ S+ + + ++ +G N+ +A GS GVV A
Sbjct: 81 MNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAA 118
>gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20]
gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20]
Length = 286
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 41/58 (70%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ L
Sbjct: 44 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQL 101
>gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas
maltophilia R551-3]
gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia
R551-3]
Length = 227
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQEL 73
+K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ +N T QE
Sbjct: 27 TKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQGITDLNKTVKGFQES 86
Query: 74 LKSNNLAQASSYIG--------KNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+ S+ + + ++ +G K + +G++ G V A + G+ +TVD T+
Sbjct: 87 MASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAA---PAAGI--VTVDITD 136
>gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni
subsp. jejuni DFVF1099]
gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni
subsp. jejuni DFVF1099]
Length = 294
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
>gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter
jejuni subsp. jejuni 81116]
gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni M1]
gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni
subsp. jejuni 327]
Length = 294
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
>gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter
jejuni RM1221]
gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter
jejuni subsp. jejuni 81-176]
gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221]
gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter
jejuni subsp. jejuni S3]
gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni
subsp. jejuni 305]
Length = 294
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 40/55 (72%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 45 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
>gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
Length = 135
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86
+ L++++TQ+ +QDP +P+ E V+QLA F+ +EQS Q+ + + +LL + Q +
Sbjct: 25 SLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKIDDLLSVQSATQTIGLL 84
Query: 87 GK--NITNADGSISGVVNAI 104
G+ +I G+++G+V +
Sbjct: 85 GRKVDIRGDAGTMTGIVKGV 104
>gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
Length = 139
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNN 78
+LG DAFLKLL+ Q+K+QDP+ P ++ +AQ A + ++ ++NS Q +L+ S
Sbjct: 27 SLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVD---KLNSIAQQQTQLVASQL 83
Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITT 125
AQA+ +G+ +T S SG+V++ S + V ++P+++
Sbjct: 84 SAQAAGLVGREVTYTTASGERASGIVSSTTFGSA--PTLRVGAVDVPLSS 131
>gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1]
gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1]
Length = 192
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165
>gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217]
gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 220
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQ 81
++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E + ++ N + Q ++ N + Q
Sbjct: 29 KNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLEYMRKNQSSQMVMMENLGIVQ 88
Query: 82 ASSYIGKNIT 91
++S IGK+ T
Sbjct: 89 SASLIGKSAT 98
>gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 192
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165
>gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf]
gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf]
gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
Length = 265
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101
Query: 78 NLAQASSYIGK 88
L ASS+IGK
Sbjct: 102 -LTGASSFIGK 111
>gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
A1501]
gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
A1501]
Length = 226
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
LG+ F+ LL+TQ+ +Q+P +P SE VAQLA FS +E +N+++ LL +S+
Sbjct: 29 LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88
Query: 80 AQASSYIGKNITNADGS 96
QA+S +G ++ GS
Sbjct: 89 LQATSLVGSSVIVETGS 105
>gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus
H3081.97]
gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293]
gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus
H3081.97]
gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293]
Length = 192
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFVERVSD 165
>gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor
[Magnetospirillum gryphiswaldense MSR-1]
Length = 220
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS- 84
D F++LL Q+++QDP +P A+E QL +S +EQ + N L E+L S +L SS
Sbjct: 27 DMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMSSG 86
Query: 85 --YIGKNITNADGSIS----GVVNAIQVSS 108
Y+G + +IS G V+A V S
Sbjct: 87 VGYMGHTVEAEGDTISVQDDGTVDAAWVYS 116
>gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 222
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN- 78
KK L +D FL L+ITQ+K+QDP PM +E +AQ S +EQ + + +L++ N
Sbjct: 24 KKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSLEQLIN----IAKLMEKQNA 79
Query: 79 ------LAQASSYIGKNITNADGSIS 98
L +S+IGKN++ S S
Sbjct: 80 QSTESQLLSGASFIGKNVSYNGNSFS 105
>gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CFBP2957]
gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CFBP2957]
Length = 218
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+TL + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum
MolK2]
gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum
MolK2]
Length = 218
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
3502]
gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
19397]
gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
Maree]
gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A
str. ATCC 3502]
gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
19397]
gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 265
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101
Query: 78 NLAQASSYIGK 88
L ASS+IGK
Sbjct: 102 -LTGASSFIGK 111
>gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum PSI07]
gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum PSI07]
Length = 218
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21]
gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21]
Length = 221
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78
Query: 75 -KSNNLAQASSYIGKNI 90
S LA A + IGK +
Sbjct: 79 SNSATLA-AVTLIGKQV 94
>gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus
AH187]
gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus
AH187]
gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
Length = 192
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165
>gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum
GMI1000]
gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia
solanacearum GMI1000]
Length = 221
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 33 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92
Query: 85 YIGKNI 90
IG+ +
Sbjct: 93 LIGRTV 98
>gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47]
Length = 153
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +TL +L
Sbjct: 28 SANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTNTLSDLS 87
Query: 75 KSNNLAQASSYIGKNITN-AD--GSISGVVNAIQV 106
S L AS IG+ ++ AD + +GVV+ I V
Sbjct: 88 NSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITV 122
>gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
Length = 225
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S + +LG FL LLITQ+++QDPTEP+ +E V Q+ FSQ+E + L E
Sbjct: 23 STASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLTSIEDKLDE 78
>gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551]
gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum
IPO1609]
gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551]
gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum
IPO1609]
Length = 218
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
Length = 192
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL + +HQDP M ++ Q AQL++ Q++ + +L+ +
Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLKSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165
>gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3]
gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
Length = 221
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM--NSTLQELLKSN-NLAQASS 84
F+ L+I QIK+QDPT P+ +E V QLA FSQ+E QM N + Q ++ N + Q++
Sbjct: 33 FMTLMIAQIKNQDPTNPIDGTEYVTQLAQFSQVESLEQMRANQSSQMVMMENLGIVQSAH 92
Query: 85 YIGKN 89
+GKN
Sbjct: 93 LVGKN 97
>gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
Length = 144
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FLKLL+ Q+ HQDP P +S +A+ A F+ ++ MN + L + A + IG
Sbjct: 36 FLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQTMNTMNQLMTNLYHDMQTSSAVALIG 95
Query: 88 KNITN--ADGS-ISGVVNAIQVSSTGLTAITVDNTEIPIT 124
K +T +DG+ ++GVV A S G + + +T +P++
Sbjct: 96 KTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGSTTVPLS 134
>gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium
197N]
gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N]
Length = 230
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E +N TL + +++Q
Sbjct: 27 QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLNKTLLSISGQIDVSQSMN 86
Query: 82 ASSYIGKNI 90
A++ IGK +
Sbjct: 87 AAALIGKAV 95
>gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
Length = 221
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
KK+ G +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78
Query: 75 -KSNNLAQASSYIGKNI 90
S LA A + IGK +
Sbjct: 79 SNSATLA-AVTLIGKQV 94
>gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
Length = 94
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
LG FLKLL+TQ+++Q+P +P +E +QLA +SQ+EQ + MN TL
Sbjct: 26 LGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTL 73
>gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH
1]
gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula
baltica SH 1]
Length = 164
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +TL +L
Sbjct: 39 SANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTNTLSDLS 98
Query: 75 KSNNLAQASSYIGKNITN-AD--GSISGVVNAIQV 106
S L AS IG+ ++ AD + +GVV+ I V
Sbjct: 99 NSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITV 133
>gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
Length = 219
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84
F+ L+I QI++QDPT P+ +E V+QLA FSQ+E + ++ N ++Q ++ N + Q++
Sbjct: 31 FMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEHMRTNQSMQMVMMENLGIVQSAQ 90
Query: 85 YIGKN 89
+GKN
Sbjct: 91 LVGKN 95
>gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
Length = 156
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 15/117 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
G F L+ Q+++QDP EP S+ +AQ+A FS +EQ+ Q+L ++ +
Sbjct: 28 FGMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQT-------QKLAQTAGIQAG 80
Query: 83 SSYIGKNI----TNADGSIS----GVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++ +GK++ T+A +S GVV A+ S + ++ +P+T R+++
Sbjct: 81 TAMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGWVPLTDVTRVTS 137
>gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301]
gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301]
Length = 225
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S +KS QD F+ LLITQ+K+QDP PM ++ +Q+A S + ++NST++ L
Sbjct: 24 SSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKLNSTVESLM 83
Query: 74 --LKSNNLAQASSYIGKNI 90
++S QA++ IG N+
Sbjct: 84 SSMQSGQSYQAANMIGHNV 102
>gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus
LGP32]
gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32]
Length = 236
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 33 GKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 92
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 93 SNQALQASSLVGRDV 107
>gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia
solanacearum CMR15]
Length = 134
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FLK+L+TQ+ +QDP +PM + +AQ+A F+ + QS QMNS ++ L+ + Q+ IG
Sbjct: 25 FLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQQMNSNIETLVSNQASLQSVGLIG 84
Query: 88 KNI 90
+ +
Sbjct: 85 RTV 87
>gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J]
gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D]
gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J]
gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D]
Length = 215
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+++QDP PM S+ +QLA + + Q+N+T+ + N QASS
Sbjct: 27 QNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMATQNAATQASS 86
Query: 85 YIGKNI 90
IG+ +
Sbjct: 87 LIGRTV 92
>gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus
weihenstephanensis KBAB4]
gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4]
Length = 192
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+
Sbjct: 43 SAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLR 102
Query: 72 ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK + DG ++G V ++++ + +DN + + R
Sbjct: 103 TTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 230
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 13/103 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79
LGQ+ FL L+ TQ+++QDP PM+ ++ +AQ+A FS + MN TL E L +
Sbjct: 35 LGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDMNQTLNGLAETLAEFRI 94
Query: 80 AQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAI 114
A AS+ +G ++ + +G I G+++ S++G+T++
Sbjct: 95 ATASNMLGNSVMIPGNYARPDNNGEIHGMLDL--PSASGVTSL 135
>gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC
BAA-1116]
gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116]
Length = 235
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L
Sbjct: 29 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFESLNS 88
Query: 74 -LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 89 SMTSNQALQASSLVGRDV 106
>gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
Length = 235
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L
Sbjct: 29 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFESLNS 88
Query: 74 -LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 89 SMTSNQALQASSLVGRDV 106
>gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 158
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+D F+KL + Q+KHQDP EPMK + + Q+A F+ +EQ M ++ ++ K
Sbjct: 65 KDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAK 115
>gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis
DSM 21326]
gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis
DSM 21326]
Length = 236
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 33 GKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 92
Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVVNAIQ 105
SN QASS +G++ + DGS++ +VN Q
Sbjct: 93 SNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQ 130
>gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta
ATCC 11568]
gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta
ATCC 11568]
Length = 246
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L LLK+ + L A+
Sbjct: 28 FLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLLTNDLLTGLLKAQQGDGLTGAAQ 87
Query: 85 YIGKNIT 91
YIGK+ T
Sbjct: 88 YIGKDAT 94
>gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CMR15]
Length = 218
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 286
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 39/55 (70%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N T+Q+++++
Sbjct: 42 TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVET 96
>gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus
DSM 2380]
gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus
DSM 2380]
Length = 218
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
LG+D FL LL+TQ+++QDP P +E +QLA +S +EQ +N LQ+L +N
Sbjct: 25 LGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQLFTVNDQLQQLETTN 79
>gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD
[Oxalobacteraceae bacterium IMCC9480]
gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD
[Oxalobacteraceae bacterium IMCC9480]
Length = 224
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQ 81
QD F+KLL+TQ+K+QDP P+ ++ +QLA S + +MN+TL+ ++ +S + Q
Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92
Query: 82 ASSYIGKNI 90
A+ IG +
Sbjct: 93 AAGMIGHGV 101
>gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
Length = 235
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L
Sbjct: 28 GESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQFENLN 87
Query: 74 --LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 88 SSMTSNQALQASSLVGRDV 106
>gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
Length = 223
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+
Sbjct: 16 TSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTK 75
Query: 70 LQEL---LKSNNLAQASSYIGKNI 90
+ + S+ + + ++ +G N+
Sbjct: 76 VGNFSDSMNSDQVLKGAALVGHNV 99
>gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
Length = 237
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 11/94 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ TL +
Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 93
Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101
SN QASS +G++ + N DGS++ +V
Sbjct: 94 SNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMV 127
>gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
Length = 229
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 11/87 (12%)
Query: 15 SKSKSKKTLG--------QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+K ++K+TLG Q++FL LL+ Q+K+QDPT P++ +E +QLA S ++ ++
Sbjct: 14 AKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGIEKL 73
Query: 67 NSTLQEL---LKSNNLAQASSYIGKNI 90
N+TL + + SN QAS+ +G +
Sbjct: 74 NTTLGSISGQIDSNQSLQASALLGHGV 100
>gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile
QCD-63q42]
Length = 202
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78
+D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N
Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118
Query: 79 -LAQASSYIGKNI-----TNADGSISGVVNAIQV 106
L+ A+S IGK + D +I GVV + +
Sbjct: 119 ALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYI 152
>gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile
630]
gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile]
Length = 202
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78
+D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N
Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118
Query: 79 -LAQASSYIGKNI-----TNADGSISGVVNAIQV 106
L+ A+S IGK + D +I GVV + +
Sbjct: 119 ALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYI 152
>gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
horse 4]
gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei
SAVP1]
gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei
NCTC 10229]
gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei
NCTC 10247]
gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei
ATCC 23344]
gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei
PRL-20]
gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
10399]
gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei
2002721280]
gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei
SAVP1]
gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
10229]
gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
10247]
gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei
2002721280]
gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
10399]
gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
horse 4]
gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei
PRL-20]
Length = 277
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 129 AAMLIGSNV 137
>gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia
pseudomallei K96243]
Length = 283
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 72 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 131
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 132 AAMLIGSNV 140
>gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 91]
Length = 283
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 72 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 131
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 132 AAMLIGSNV 140
>gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium
profundum SS9]
gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium
profundum SS9]
Length = 238
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQ 71
SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN +L
Sbjct: 31 SKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQFGSLN 90
Query: 72 ELLKSNNLAQASSYIGKN--------ITNADGSISGVV 101
+ S+ QASS +G++ + A+G I+G+V
Sbjct: 91 SAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMV 128
>gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 668]
gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia
pseudomallei 1710b]
gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 14]
gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 9]
gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei B7210]
gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 7894]
gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei NCTC 13177]
gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 112]
gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei BCC215]
gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
9]
gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
52237]
gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
52237]
gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
9]
gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
Length = 280
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 129 AAMLIGSNV 137
>gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
15579]
gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
15579]
Length = 279
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 107 -LTGASNFIGK 116
>gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative
[Roseobacter sp. CCS2]
gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative
[Roseobacter sp. CCS2]
Length = 220
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 9 PTQQEFS----KSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
PTQQ S S + +G D FL++L Q+K+QDP P+ +++ QLA FS +EQ
Sbjct: 6 PTQQVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATFSGVEQ 65
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+V N L+ L + + L ++ +GK +
Sbjct: 66 AVLTNDLLKSLTTQMNTGGLVDMAALVGKQV 96
>gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
Length = 245
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGSNV 107
>gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium
HTCC2083]
gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium
HTCC2083]
Length = 230
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--- 75
+K+ LGQD FLKL+ Q+++QDP PM + +AQ+A FS + M TL +
Sbjct: 30 AKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGISDMGKTLNTIADQLG 89
Query: 76 ------SNNLAQASSYIGKNITNAD--GSISGVVN 102
S N+ S + NI AD G + GV++
Sbjct: 90 QFRVGSSVNMLGHSVLLPGNIARADDKGEVHGVLD 124
>gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
Length = 273
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 110 -LTGASNFIGK 119
>gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia MC0-3]
gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
Length = 248
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 40 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 99
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 100 AALLIGTNV 108
>gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str.
Langeland]
gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str.
Langeland]
gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str.
230613]
Length = 273
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 110 -LTGASNFIGK 119
>gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis
biprosthecum C19]
gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis
biprosthecum C19]
Length = 218
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 8 NPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
N T Q + +K K+L + FL LL QI++QDP PM ++E QL +S +EQ ++
Sbjct: 8 NATTQT-TATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSVEQQLK 66
Query: 66 MNSTLQELLKS----NNLAQASSYIGKNIT 91
N L+++ K+ + + A +YIGK ++
Sbjct: 67 GNDYLEKISKALDGGDTMNTAVNYIGKTVS 96
>gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str.
Kyoto]
gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str.
Kyoto]
Length = 273
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 110 -LTGASNFIGK 119
>gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
23344]
Length = 255
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 47 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 106
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 107 AAMLIGSNV 115
>gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
6946]
gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
6946]
Length = 229
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 14/93 (15%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL+LL+T+++HQDPT+PM + + + Q A S +E S + L+EL S+ L+
Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEEL--SDQLS----- 84
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
N + S GV+ Q++S G +AIT++N
Sbjct: 85 -----ANTNFSAIGVIG--QMASLGSSAITLEN 110
>gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia
pseudomallei K96243]
Length = 261
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 50 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 109
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 110 AAMLIGSNV 118
>gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus
denitrificans PD1222]
gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222]
Length = 221
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 12 QEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMN 67
Q FS + Q + FLK+L TQIK+QDP PM +++ QLA FS +EQ V +
Sbjct: 18 QSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQLATFSGVEQQVQTNLLL 77
Query: 68 STLQELLKSNNLAQASSYIGKNI 90
+ L + + L Q S++IG+ +
Sbjct: 78 TQLLQNINGGELGQFSNWIGREV 100
>gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
10987]
gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus
ATCC 10987]
Length = 192
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + L +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVERVSD 165
>gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 243
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN--- 67
QQE K+ + L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN
Sbjct: 27 QQE-QKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGITKMNDQF 85
Query: 68 STLQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101
L L SN QASS +G ++ DG++SGVV
Sbjct: 86 GVLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVV 127
>gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603]
gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621]
gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621]
gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603]
Length = 192
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFVERVSD 165
>gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 1106a]
gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei DM98]
gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a]
gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
Length = 280
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 129 AAMLIGSNV 137
>gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
Length = 280
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 129 AAMLIGSNV 137
>gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter
jejuni subsp. jejuni IA3902]
Length = 294
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 39/54 (72%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
L +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 46 LDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
>gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei MSHR346]
gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei MSHR346]
Length = 280
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 69 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 128
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 129 AAMLIGSNV 137
>gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703]
gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703]
Length = 225
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ F+ LL+ Q+++QDPT+PM S+ QLA S + ++N+TL + L +N + Q
Sbjct: 31 QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 91 ASTLIGNGV 99
>gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia
thailandensis TXDOH]
Length = 289
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 78 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 137
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 138 AAMLIGSNV 146
>gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium
botulinum H04402 065]
Length = 270
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 107 -LTGASNFIGK 116
>gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum]
Length = 278
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KS 76
KK LG + ++ ++I Q+++QDP PM + +QLA FSQ++Q V MN ++ + +
Sbjct: 31 KKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMANQGRE 90
Query: 77 NNLAQASSYIGKNI 90
+ Q ++G+ +
Sbjct: 91 TDALQMVGFLGREV 104
>gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia
multivorans ATCC 17616]
gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia
multivorans ATCC 17616]
gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC
17616]
gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia
multivorans ATCC 17616]
Length = 247
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGSNV 107
>gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
Length = 243
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + SIS
Sbjct: 110 AALLIGSTVLAPGSSIS 126
>gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae
Ech1591]
gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591]
Length = 223
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90
Query: 82 ASSYIGKNI 90
A+S IG +
Sbjct: 91 AASLIGHGV 99
>gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2M]
gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2]
gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD1]
gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD1]
gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2]
gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2M]
Length = 247
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGSNV 107
>gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia AU 1054]
gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia HI2424]
gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054]
gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424]
Length = 248
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 40 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 99
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 100 AALLIGTNV 108
>gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella
succinogenes DSM 1740]
gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
Length = 270
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
TL +DAF++L + Q+K QDPT PM+ + + Q A+ +Q+EQ +M TL
Sbjct: 26 TLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTL 74
>gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
Length = 270
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGK 88
L AS++IGK
Sbjct: 107 -LTGASNFIGK 116
>gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani
AFC27]
gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani
AFC27]
Length = 226
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG + FLKL+ Q+ +QDP EPM S ++Q+A F ++ + ++ QE+ L+SN
Sbjct: 30 LGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSGSLQSNQA 89
Query: 80 AQASSYIGKNI--------TNADGSISGVV 101
QAS +G+++ A GSI G V
Sbjct: 90 LQASGLVGRSVLVPSAESSLEAGGSIRGAV 119
>gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160]
gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160]
Length = 237
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L + +Q
Sbjct: 44 QNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLSSLSTQLTAGQQSQ 103
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + ++ SI+
Sbjct: 104 AALLIGSTVLSSGNSIT 120
>gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus
denitrificans ATCC 25259]
gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus
denitrificans ATCC 25259]
Length = 221
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
SKS S T QD FL LL+ Q+K+QDP P+ +E +Q+A S +E MN +L+ L
Sbjct: 22 SKSGSSDT--QDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSLEALA 79
Query: 74 --LKSNNLAQASSYIGKNI 90
+ ++ ++QA++ IG +
Sbjct: 80 SSMGASQMSQAANLIGHAV 98
>gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia
thailandensis Bt4]
gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia
thailandensis E264]
Length = 278
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 67 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 126
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 127 AAMLIGSNV 135
>gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
Length = 237
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L +
Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMT 93
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 94 SNQALQASSLVGRDV 108
>gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
Length = 192
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165
>gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217]
gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 135
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL+L + Q+ +QDP EP+ SE +AQLA FS +E + Q N LL + QA
Sbjct: 23 DDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSLEINRQSNDNSLSLLAIGSSDQALGL 82
Query: 86 IGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+++ T + + G V + + G +TV + + T I++
Sbjct: 83 IGRSVEVNTQSGQAFIGDVTGVNFTQQG-PMLTVKGADDSLLTDIKLG 129
>gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2]
gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2]
gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
Length = 224
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S N
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86
Query: 80 AQASSYIGKNIT 91
AQ +S IGK +
Sbjct: 87 AQLASLIGKYVV 98
>gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM
684]
gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM
684]
Length = 222
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
S LG+ FL L++ Q+K+QDP P A+E AQLA FS +EQ +N L+ +
Sbjct: 22 SSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQLFNVNDNLESM 78
>gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
Length = 224
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S N
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86
Query: 80 AQASSYIGKNIT 91
AQ +S IGK +
Sbjct: 87 AQLASLIGKYVV 98
>gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile
ATCC 43255]
Length = 202
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78
+D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N
Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNEKLDVLLALSNSTLINS 118
Query: 79 -LAQASSYIGKNI 90
L+ A+S IGK +
Sbjct: 119 ALSMATSLIGKEV 131
>gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia J2315]
gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia
cenocepacia J2315]
Length = 234
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 26 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 85
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 86 AALLIGTNV 94
>gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus
communis]
gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus
communis]
Length = 222
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81
QD F+ LL+TQ+K+QDP PM ++ +Q+A + + ++N T+ L+ S L Q
Sbjct: 31 QDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKLNETMSSLIGSVQLGQSYQ 90
Query: 82 ASSYIGKNI 90
A+S IG+N+
Sbjct: 91 ATSMIGRNV 99
>gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter
antarcticus 238]
gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter
antarcticus 238]
Length = 226
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQA 82
+ FLK+L Q+++QDP P +SE QLA FS +EQ+V N L L+ N +AQ
Sbjct: 37 ETFLKMLTVQMENQDPLNPTDSSEYAQQLATFSGVEQAVLTNDLLSALMVQMNTTGMAQM 96
Query: 83 SSYIGK 88
+ ++GK
Sbjct: 97 ADWVGK 102
>gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
Length = 248
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia
ambifaria AMMD]
gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD]
Length = 248
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus
AH1134]
gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185]
gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus
AH1134]
gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185]
gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 192
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165
>gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp.
383]
gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383]
Length = 251
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLTAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 192
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165
>gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia
ambifaria MC40-6]
gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6]
Length = 248
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus
G9842]
gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus
G9842]
gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
Length = 192
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165
>gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp.
TJI49]
Length = 229
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 17 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSTQLAAGQQTQ 76
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 77 AALLIGSNV 85
>gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
Length = 248
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSLTSLSSQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
centenum SW]
gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
centenum SW]
Length = 309
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83
+ FL+LL Q+K+QDP +P + SE QL FSQ+EQ + NS L L QA+
Sbjct: 35 ETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQATVA 94
Query: 84 -SYIGKNI 90
YIGK +
Sbjct: 95 LQYIGKTV 102
>gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp.
R2A62]
gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp.
R2A62]
Length = 220
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FLK++ QI++QDP +P+ +++ QLA FS +EQ V+ N L L L+ + +A+ ++
Sbjct: 31 FLKMMTAQIENQDPLDPIDSADYAVQLATFSSVEQQVKTNDLLSALGGQLQLSGMAEMAA 90
Query: 85 YIGKN 89
++G +
Sbjct: 91 WVGMD 95
>gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 235
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L +
Sbjct: 32 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFENLNSSMT 91
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 92 SNQALQASSLVGRDV 106
>gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
HTCC2633]
gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
HTCC2633]
Length = 242
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQA 82
D FL LL Q+K+QDP +P+++ + V QL FS +EQ + N +L+ LL +S+ +A
Sbjct: 29 DTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLALQQSDAQLKA 88
Query: 83 SSYIGKNIT 91
+IGK T
Sbjct: 89 LDFIGKEAT 97
>gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
bv. albensis VL426]
gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
bv. albensis VL426]
Length = 235
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLSSSMTSNQALQASSLVGRDV 106
>gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae
O395]
gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
8457]
gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
BX 330286]
gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
B33]
gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TMA 21]
gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC9]
gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TM 11079-80]
gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
12129(1)]
gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae
MJ-1236]
gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
CIRS 101]
gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
INDRE 91/1]
gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC27]
gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
CT 5369-93]
gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae
RC385]
gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
757]
gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
8457]
gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
12129(1)]
gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TM 11079-80]
gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC9]
gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TMA 21]
gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
B33]
gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
BX 330286]
gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
MJ-1236]
gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
CIRS 101]
gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC27]
gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
INDRE 91/1]
gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
CT 5369-93]
gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae
RC385]
gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
757]
gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae
LMA3894-4]
Length = 235
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
Length = 161
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K+ + + FL LL+TQ+K+QDP+ PM +E +AQ + MEQ + QE
Sbjct: 30 KQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASMEQLTALTKVNQESFALQMR 89
Query: 80 AQASSYIGKNI--TNADG-SISGVVNAIQ 105
+++ IG+++ TN+ G + +G V++I+
Sbjct: 90 VASAALIGQDVTFTNSHGDTTTGRVDSIR 118
>gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC341]
gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC341]
Length = 235
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
Length = 233
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 15 SKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+++ K L D FLK+L Q+++QDP P+++++ QLA FS +EQ V+ N L+
Sbjct: 29 AEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVEQQVRTNDLLET 88
Query: 73 L---LKSNNLAQASSYIG 87
L + + ++Q S ++G
Sbjct: 89 LGDRMGAMGMSQLSGWVG 106
>gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
15053]
gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
15053]
Length = 171
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV-QMNSTLQEL 73
S SK L + F KLL Q+++QD PM SE +AQ+ V +QM Q++ +M++ E+
Sbjct: 29 SSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQM-VQTQMIQAITEMSAINLEM 87
Query: 74 LKSNNLAQASSYIGKNITNA----DGSISG 99
N ++ ASS +GK +T A DG +G
Sbjct: 88 YAINTISYASSMVGKTVTMAEVDEDGKFTG 117
>gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus
B4264]
gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus
B4264]
gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
Length = 192
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNDVQLVINNKVVSLRFVERVSD 165
>gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
Length = 192
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M + L +
Sbjct: 46 KTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLKTTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S + ++GK + DG+ ++G V ++++ + +DN + + R+S+
Sbjct: 106 YSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFVERVSD 165
>gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC586]
gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC586]
Length = 235
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 230
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T +Q + ++ L S+
Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101
Query: 85 YIGK------NI-TNADGSISGVV 101
+IGK NI T+ DG+ +G V
Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125
>gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
Length = 223
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN V + +F + + + L +DAF++L + Q++ QDPT+PM + + Q A S ME
Sbjct: 6 INNNVTTSGNDFVYNPNSQ-LDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLSTMEM 64
Query: 63 SVQMNSTLQELLKSNNLAQASS 84
+ M +TL L +N L Q SS
Sbjct: 65 NQNMQTTLDNL--ANTLQQTSS 84
>gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus
VM573]
gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus
VM603]
gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
VM223]
gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus
VM603]
gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus
VM573]
gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
VM223]
Length = 235
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus
CMCP6]
gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus
YJ016]
gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio
vulnificus MO6-24/O]
gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio
vulnificus CMCP6]
gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016]
gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio
vulnificus MO6-24/O]
Length = 235
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS + L +
Sbjct: 32 GKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMT 91
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 92 SNQALQASSLVGRDV 106
>gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+GQD FL+LLI Q+++QDP +P+ + + QLA + + +N+ E+LK + Q
Sbjct: 11 VGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEMLKLQQITQG 70
Query: 83 SSYIGKNI 90
+ +GK I
Sbjct: 71 ADLVGKTI 78
>gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 230
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T +Q + ++ L S+
Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101
Query: 85 YIGK------NI-TNADGSISGVV 101
+IGK NI T+ DG+ +G V
Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125
>gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
Length = 220
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 20 KKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76
K +LG D+ FL+L I Q+++QDP P A+ + QL+ S +EQS + L LL +
Sbjct: 19 KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78
Query: 77 -NNLAQAS-SYIGKNI 90
N+L+ S S+IGK +
Sbjct: 79 NNSLSMGSVSFIGKTV 94
>gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia
xenovorans LB400]
gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans
LB400]
Length = 240
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
Length = 236
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L
Sbjct: 30 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNS 89
Query: 74 -LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 90 SMTSNQALQASSLVGRDV 107
>gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654]
gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654]
Length = 227
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E KSKS + + FLK+L Q+++QDP P+++S+ QLA FS +EQ VQ N L+
Sbjct: 23 EDPKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKA 82
Query: 73 L---LKSNNLAQASSYIG 87
L L +++ + ++G
Sbjct: 83 LQTQLGVMSMSDLAGWVG 100
>gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
Length = 240
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
Length = 240
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus
40B]
gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus
40B]
Length = 236
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L
Sbjct: 30 ESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNS 89
Query: 74 -LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 90 SMTSNQALQASSLVGRDV 107
>gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
Length = 243
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 110 AALLIGSTVLAPGSSVS 126
>gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis EO147]
Length = 282
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q
Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 131 AAMLIGSNV 139
>gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile
QCD-66c26]
gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile
CIP 107932]
gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile
QCD-76w55]
gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile
QCD-97b34]
gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile
QCD-37x79]
gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile
CD196]
gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile
R20291]
gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile
QCD-32g58]
gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile
CD196]
gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile
R20291]
Length = 202
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN------ 78
+D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ MN L LL +N
Sbjct: 59 KDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMNDKLDILLALSNSTLINS 118
Query: 79 -LAQASSYIGK 88
L+ A+S IGK
Sbjct: 119 ALSMATSLIGK 129
>gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110]
gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110]
Length = 228
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84
FLKLL+TQ+ +QDP PM+ +E +QLA S + ++N+ L L+ +N + QA+S
Sbjct: 33 FLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIERLNTALSGLVNQTGANQVLQAAS 92
Query: 85 YIGKNITNADGSIS 98
IG N+ + ++S
Sbjct: 93 LIGYNVLSPGNALS 106
>gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
14863]
gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
14863]
Length = 139
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 13/112 (11%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG+ FL+LL+TQ+++QDP P+ E +AQLA FS +EQ + E ++ L+
Sbjct: 30 LGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQ-------MTENVRWARLSYG 82
Query: 83 SSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S +G + T I G+V A+++ S G + + N EI + I ++
Sbjct: 83 LSLVGAAVKYWGTEGQPEI-GIVYAVRIDS-GEPLLNLGNREIRLEQVIEVA 132
>gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565]
gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565]
Length = 246
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 13/94 (13%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75
KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E S QM + L L+
Sbjct: 26 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGN-LNTLMT 84
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVV 101
S+ QAS+ +G+N+ +GSISGVV
Sbjct: 85 SSQALQASALVGQNVLLPSNIGYLEKEGSISGVV 118
>gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083]
gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083]
Length = 224
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 11 QQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q++ ++++ LG D FLK+L Q+++QDP P+ +++ QLA FS +EQ V+ N
Sbjct: 17 QRDTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTND 76
Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90
L L + S + ++G ++
Sbjct: 77 LLSSLAATMASGGVESLGHWVGMDV 101
>gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium
HF0770_45N15]
Length = 262
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSN 77
+ LG+ FL LL+TQ+ +QDPT+PMK + + Q+A +EQ +N+ ++++ K
Sbjct: 29 RELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVEQLQNLNAQTRQVIGLQKQI 88
Query: 78 NLAQASSYIGKNITNADGSIS 98
A ASS +G+++ S+S
Sbjct: 89 ARASASSLLGRDVEVGSTSLS 109
>gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus]
gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633]
gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus 10329]
Length = 235
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L
Sbjct: 30 STGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSS 89
Query: 74 LKSNNLAQASSYIGKNI 90
+ SN QASS +G+++
Sbjct: 90 MTSNQALQASSLVGRDV 106
>gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia
phytofirmans PsJN]
gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN]
Length = 240
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNI 90
A+ IG +
Sbjct: 107 AALLIGSTV 115
>gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis C6786]
Length = 282
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q
Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 131 AAMLIGSNV 139
>gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4]
Length = 273
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSNNLA-- 80
Q+ FL+LL+ ++++QDP EP + VAQLA F+Q+E QSVQ N++A
Sbjct: 46 QEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQ-----------NDMATI 94
Query: 81 QASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVD 117
+A+S +GK + D + + G VN + G + V+
Sbjct: 95 EANSLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVN 133
>gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
Length = 218
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S S S QD F+ LLITQ+K QDP PM ++ +QLA S + ++NST++ ++
Sbjct: 17 SGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGIDKLNSTMESMI 76
Query: 75 ---KSNNLAQASSYIGKNI 90
+S+ QAS+ IG+ +
Sbjct: 77 SNVQSSQTYQASNMIGRYV 95
>gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp.
CNPT3]
gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp.
CNPT3]
Length = 232
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+ +N + P Q +K KK L Q+ F LL Q+ +QDP +P+ SE +AQ+A F+
Sbjct: 10 LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69
Query: 60 MEQSVQMN---STLQELLKSNNLAQASSYIGKNI 90
E +M + L+ +L S+ +ASS +GK +
Sbjct: 70 AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKV 103
>gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
Length = 221
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSN-NLAQASS 84
F+ L+I QI++QDPT P+ ++E V QLA FSQ+E + +++N + Q ++ N + Q++
Sbjct: 33 FMTLMIAQIQNQDPTNPIDSTEYVTQLAQFSQVESLEQMRLNQSTQMVMMENLGIVQSAQ 92
Query: 85 YIGKN 89
IGK+
Sbjct: 93 LIGKD 97
>gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
Length = 217
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
KT ++ F++LL Q+K+QDP+ P +++ VAQ+A FS +EQ +N+T+ +
Sbjct: 39 KTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQMTNLNTTM-------TFS 91
Query: 81 QASSYIGKNI 90
A++ +GK +
Sbjct: 92 SANNLVGKTV 101
>gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586]
gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586]
Length = 223
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90
Query: 82 ASSYIGKNI 90
A+S IG +
Sbjct: 91 AASLIGHGV 99
>gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya
dadantii 3937]
gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya
dadantii 3937]
Length = 223
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90
Query: 82 ASSYIGKNI 90
A+S IG +
Sbjct: 91 AASLIGHGV 99
>gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
Length = 335
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
L +DAFLKLL+ +++HQDPT+PM + + Q A S +E N T+ +L+ +
Sbjct: 45 LDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDA 98
>gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
93-146]
gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
93-146]
Length = 244
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+++QDPT P+K +E QLA S + ++N+TL + + SN Q
Sbjct: 34 QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSIQ 93
Query: 82 ASSYIGKNI 90
A+S IG +
Sbjct: 94 ATSLIGHGV 102
>gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia
phymatum STM815]
gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815]
Length = 237
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LLI Q+K+QDPT PM +S+ +QLA + + Q+NS+L L L +N Q
Sbjct: 44 QNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTGIGQLNSSLTSLASQLTTNQQTQ 103
Query: 82 ASSYI 86
A++ I
Sbjct: 104 AANLI 108
>gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 236
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 33 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 92
Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101
SN QASS +G++ + DGS++ +V
Sbjct: 93 SNQALQASSLVGRDVLVPGASGVKTGDGSMAAMV 126
>gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila]
Length = 244
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75
KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q++ S E S QM +++
Sbjct: 25 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSEGIASLSTQMGKLNDQMIS 84
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVV 101
S L QASS +G+N+ + +GS+SGVV
Sbjct: 85 SQAL-QASSLVGQNVLLQSNMGYLDKEGSLSGVV 117
>gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus
12B01]
gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus
12B01]
Length = 237
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 93
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 94 SNQALQASSLVGRDV 108
>gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas
europaea ATCC 19718]
gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas
europaea ATCC 19718]
Length = 223
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81
QD FLKLL+TQ+++QDP PM +E +Q+A S + ++N+TL++L+ ++ +
Sbjct: 32 QDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNTTLEKLVADSDARRSFE 91
Query: 82 ASSYIGKNI 90
A++ IG+ +
Sbjct: 92 AATMIGRGV 100
>gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
Length = 225
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ F+K+L Q +QDP EP+ ++E AQLA FS +EQ + N+ L+ L L N+A
Sbjct: 33 ETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTKSNTLLEGLQSQLGLANMAAL 92
Query: 83 SSYIG 87
S ++G
Sbjct: 93 SGWVG 97
>gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei
1710b]
Length = 459
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L L + Q
Sbjct: 248 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQLTAGQQTQ 307
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 308 AAMLIGSNV 316
>gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
Length = 228
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81
QD F+KLLI Q+K+QDP PM +E +Q+A S + +MN++L + S Q
Sbjct: 31 QDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNASLSTFISSMQATQALQ 90
Query: 82 ASSYIGKNI 90
ASS IG +
Sbjct: 91 ASSLIGNTV 99
>gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter
upsaliensis RM3195]
gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter
upsaliensis RM3195]
Length = 274
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-----SN 77
L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E N+T+Q+++ SN
Sbjct: 40 LDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEMQQNTNNTMQQMVAQMKKLSN 99
Query: 78 NLAQASSY-----IGKNITNADGSI 97
+ + S IGK T AD I
Sbjct: 100 AMGTSQSIGALGAIGKMATVADNKI 124
>gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602]
gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602]
Length = 234
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQAS 83
+FL LL+ Q+K+QDPT PM S+ +QLA S + ++N+TL + + S + QAS
Sbjct: 38 SFLTLLVAQLKNQDPTNPMDNSQLTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQAS 97
Query: 84 SYIGKNI 90
S IG +
Sbjct: 98 SLIGHGV 104
>gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
Length = 220
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FL LL+TQ+K+QDP PM ++ +Q+A S + Q+NST+Q L + ++ Q
Sbjct: 28 QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87
Query: 82 ASSYIGK 88
A+S IG
Sbjct: 88 ATSMIGH 94
>gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens SBW25]
gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas
fluorescens SBW25]
Length = 241
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E
Sbjct: 40 QSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLE 80
>gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
Length = 235
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L ++ AQ
Sbjct: 42 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101
Query: 82 ASSYIGKNI 90
++ IG +
Sbjct: 102 SALLIGSTV 110
>gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803]
gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803]
Length = 192
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S+ K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M + L
Sbjct: 43 SEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLR 102
Query: 74 --LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK + DG ++G V ++++ + +DN + + R
Sbjct: 103 TTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNEVQLVIDNKVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2]
gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2]
Length = 217
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FL+++ TQ+K+QDP P+ +++ QLA FS +EQ + NS L+ + +AQ +
Sbjct: 31 FLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQFGLMGMAQMAG 90
Query: 85 YIGK 88
++G
Sbjct: 91 WVGH 94
>gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297]
gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297]
Length = 248
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
S LG+ FL+L+I ++ +QDP +P ++ +A+LA FS +E M++ +EL K
Sbjct: 25 SNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFSTVEGIQNMSAGFEELATSYK 84
Query: 76 SNNLAQASSYIGKNITNADGSIS 98
S+ QASS +G +T DG+ S
Sbjct: 85 SSQALQASSLVGGAVT-IDGNTS 106
>gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
Length = 285
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 37/52 (71%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E N+T+Q+++
Sbjct: 41 LDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEMQQNTNNTMQQMV 92
>gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
16]
gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
16]
Length = 236
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 33 GKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFESLNASMT 92
Query: 76 SNNLAQASSYIGKN--------ITNADGSISGVV 101
SN QASS +G++ + DGS++ +V
Sbjct: 93 SNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMV 126
>gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 235
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L +
Sbjct: 32 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMT 91
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 92 SNQALQASSLVGRDV 106
>gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
WH6]
gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
WH6]
Length = 241
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E
Sbjct: 40 QSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLE 80
>gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17029]
Length = 222
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ +
Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93
Query: 85 YIGK 88
+IG+
Sbjct: 94 WIGR 97
>gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
Length = 192
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ +G+D FLKL ++ +HQDP M ++ Q AQL++ Q++ + +L+ +
Sbjct: 46 KTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDSLRTTM 105
Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK + DG ++G V ++++ + ++N + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDVQLIINNKVVSLRFVERVSD 165
>gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2]
Length = 229
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
+++ L Q+ F +L Q+ +QDPT+P+ + VAQ+ F+ + Q+N + +
Sbjct: 27 TEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAASMT 86
Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
SN QASS IG+N+ + G V + + G++ + V+
Sbjct: 87 SNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVN 123
>gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
Length = 222
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-NNL--AQASS 84
FL LL+TQ+++Q+P EP ++ V+QL ++ EQ +NS L L S N+L +S+
Sbjct: 33 FLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNSSN 92
Query: 85 YIGKNIT 91
YIG+ +T
Sbjct: 93 YIGQTVT 99
>gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
Length = 220
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASS 84
F+ L+I QI++QDPT P+ +E V+QLA FSQ+E QM ST ++++ + Q++
Sbjct: 32 FMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVIMENLGIVQSAQ 91
Query: 85 YIGKN 89
+GK+
Sbjct: 92 LVGKD 96
>gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
Length = 183
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIG 87
+L Q+K+QDP P+++++ QLA FSQ+EQ V N ++L E L + L Q + ++G
Sbjct: 1 MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60
Query: 88 KNITNADGSISGVVNAIQV 106
+ A ++S V AI V
Sbjct: 61 REARVA-AAVSYVGTAIDV 78
>gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
Length = 156
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K S ++ +D F+K+LI Q+ +QDPT PM+ E ++Q+A FS +EQ + ++ ++
Sbjct: 18 TKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQMQSIGKGIETMM 77
Query: 75 KSNNLAQASSY---IGKNITNADGSISGVVNAIQVSST 109
+ + A +Y IG ++ +++ V+ST
Sbjct: 78 LNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTST 115
>gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
Length = 356
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG +AF+KL + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++
Sbjct: 105 LGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 155
>gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia
thailandensis MSMB43]
Length = 268
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L L + ++ Q
Sbjct: 57 QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTSLSSQITASQQTQ 116
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 117 AAMLIGSNV 125
>gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides 2.4.1]
gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1]
Length = 222
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ +
Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93
Query: 85 YIGK 88
+IG+
Sbjct: 94 WIGR 97
>gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
Length = 251
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 21 KTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
K LG + FL +L TQ+K+QDP +P+ ++ QL F+ +EQ++ NS L +L++ +
Sbjct: 50 KGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVEQNIGTNSRLDKLVQLQS 109
Query: 79 LAQAS---SYIGKNI 90
AS +Y+G+ +
Sbjct: 110 AGTASTNLAYLGRTV 124
>gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides KD131]
gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N]
gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131]
gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N]
Length = 222
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASS 84
FL++L TQ+++QDP PM++ + QLA FS +EQ V+ N L + S L++ +
Sbjct: 34 FLRMLTTQLQNQDPMNPMESDDFAMQLATFSGVEQQVKTNEILTGMGASIGVMGLSELAG 93
Query: 85 YIGK 88
+IG+
Sbjct: 94 WIGR 97
>gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus
82-40]
Length = 263
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKAS---EQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
L +DAFLKLL+ ++++QDPTEPM ++ EQ +QLA E + ++ L ++S+
Sbjct: 45 LDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKVMKQLTTQMQSSLS 104
Query: 80 AQASSYIGK--NITNA 93
A S +GK N++NA
Sbjct: 105 MTAMSALGKMANLSNA 120
>gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum
JL354]
Length = 102
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 5 TEVNPTQQEFSKSKSKKT---------LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
T VNP S S T LGQ FL+LL Q++ QDP EP+ E +AQ+A
Sbjct: 2 TSVNPFASATSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMA 61
Query: 56 VFSQMEQSVQMNSTLQELLK 75
FS + + + N+TL+++++
Sbjct: 62 QFSSLAGTAETNTTLEKIVE 81
>gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
Length = 151
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K L + AFL LL+ Q+++QDP+ PM +S+ + Q S ME V + T +E
Sbjct: 25 KELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLVALADTQRESFALQMRM 84
Query: 81 QASSYIGKNITNADGSIS---GVVNAIQVSST------GLTAITVD 117
A+ +G+ +T D + + GVV A+ + + G T +T+D
Sbjct: 85 AAAQLVGQQVTWTDAAGATQKGVVTAVSYAGSVPTVKIGDTDVTLD 130
>gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas
arsenicoxydans]
gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas
arsenicoxydans]
Length = 225
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
KS QD FL LL+TQ+K+QDP P+ ++ +QLA S + ++N TL+ ++
Sbjct: 27 KSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTLESMMGSY 86
Query: 75 KSNNLAQASSYIGKNITNADGSIS 98
+SN QA++ IG + +IS
Sbjct: 87 QSNQALQAANMIGHGVLAPGSNIS 110
>gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens
PCA]
gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens
PCA]
gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens
KN400]
Length = 218
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 20 KKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
KK+ G +D FLKL +TQ+++QDP P ++E + QLA +Q+EQ+ NS L LL
Sbjct: 17 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQAYNTNSNLSNLLNLV 76
Query: 78 NLA---QASSYIGKNIT 91
N A A S+IGK IT
Sbjct: 77 NGATSLSAVSFIGKEIT 93
>gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 90
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
LG FLKLL Q+ HQDPT+P+ ++ VAQLA FS + + Q N+ L
Sbjct: 28 LGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQL 75
>gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
Length = 224
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 15/114 (13%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQE 72
+ K LG++ F++L++ Q+K+Q+P +P E ++QLA FS +E+ S ++S + E
Sbjct: 23 ASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEMQKLSGNVDSVIGE 82
Query: 73 LLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118
+S QAS+ +GK + A G ++G V+ +STG +++ N
Sbjct: 83 -FRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVDV--PASTGGVQVSILN 133
>gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the
initiation of hook assembly) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 231
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
F+KLL+ Q+K+QDPT PMK +E + LA + + ++N+TL + + +N QAS+
Sbjct: 35 FMKLLVAQMKNQDPTNPMKNNELTSHLAQINTLAGIEKLNTTLGSIVGQINNNQPVQASA 94
Query: 85 YIGKNI 90
IG+ +
Sbjct: 95 LIGRGV 100
>gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio
salmonicida LFI1238]
gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida
LFI1238]
Length = 236
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
K L Q+ FL LL Q+ QDP++P++ + +AQ+A F+ ++ +MN L +
Sbjct: 33 GKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGKMNKQFDSLNTSMT 92
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 93 SNQALQASSLVGRDV 107
>gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
Length = 235
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 15/94 (15%)
Query: 5 TEVNPTQQEFSKSKSKKTL----GQD----AFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
++VN T + S+ T GQD AF K+L ++ +QDP+ +E V+Q+A
Sbjct: 11 SDVNKTNDSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQ 70
Query: 57 FSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
FS +EQ V +N+T++ L A++ IGK +
Sbjct: 71 FSSLEQMVNLNTTMK-------LTGANNLIGKTV 97
>gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
Length = 226
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGATTDLTNG 112
>gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda
EIB202]
gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda
EIB202]
gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda FL6-60]
Length = 232
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+++QDPT P++ +E QLA S + ++N+TL + + SN Q
Sbjct: 34 QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSIQ 93
Query: 82 ASSYIGKNI 90
ASS IG +
Sbjct: 94 ASSLIGHGV 102
>gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum
rubarum]
Length = 276
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77
++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + +
Sbjct: 30 RQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAHDGAD 89
Query: 78 -NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
N ++G+ +T + G NA +++ +G ++T T + +RI
Sbjct: 90 ANKMMMVGFLGQRVT-----MKG--NAFRLAPSGNVSLTYRQTGASQSGHLRI 135
>gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera
4Rx13]
gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera
4Rx13]
Length = 225
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+KS + + L Q+ FL LL+ Q+K+QDPT PM+ +E QLA + ++ ++N+TL +
Sbjct: 20 AKSNTGQDL-QNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGIEKLNTTLGSIS 78
Query: 74 --LKSNNLAQASSYIGKNI 90
+ SN QA++ IG +
Sbjct: 79 GQINSNQSLQATALIGHGV 97
>gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri
ES114]
gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri
MJ11]
gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114]
gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114]
gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri
MJ11]
Length = 236
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
E N T++ + K L Q+ FL LL Q+ QDP +P++ + +AQ+A F+ ++ +
Sbjct: 23 EANKTEK---TTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90
MN+ L + SN QASS +G+++
Sbjct: 80 MNTQFDSLNSSMTSNQALQASSLVGRDV 107
>gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
Length = 226
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGATTDLTNG 112
>gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
Length = 224
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQASSY 85
FL LL QIK+QDP PM +++ QL ++ +EQ ++ N L+ L L + N+A + +
Sbjct: 32 FLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASSVNM 91
Query: 86 IGK 88
IGK
Sbjct: 92 IGK 94
>gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio
orientalis CIP 102891]
gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio
orientalis CIP 102891]
Length = 237
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ TL +
Sbjct: 34 GKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQFETLNASMT 93
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 94 SNQALQASSLVGRDV 108
>gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens AM1]
gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens AM1]
Length = 226
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGAATDLTNG 112
>gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 31758]
gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 31758]
Length = 228
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + SN
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91
Query: 82 ASSYIGKNI 90
A+S IG+ +
Sbjct: 92 ATSLIGRGV 100
>gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
Length = 231
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA+ S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium
extorquens DM4]
gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens DM4]
Length = 226
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L K+ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGAATDLTNG 112
>gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima
MSB8]
gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima
MSB8]
Length = 224
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNL 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ ++ S +
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86
Query: 80 AQASSYIGKNIT 91
AQ +S IGK +
Sbjct: 87 AQLASLIGKYVV 98
>gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913]
gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913]
Length = 217
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 13/87 (14%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQMNSTLQELLKSNNLA--QAS 83
FL+LL+ QI +Q+P +PM ++ V+QLA FS +E QS++ N T L ++LA +A+
Sbjct: 33 FLELLVAQISNQNPLQPMDGTQYVSQLAEFSNVESLQSIRQN-TADGLDYVSSLAVLEAT 91
Query: 84 SYIGKNIT--------NADGSISGVVN 102
+ +G+ + DGS+SG+VN
Sbjct: 92 NMVGQTVDVQASSIALEQDGSVSGMVN 118
>gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio
metschnikovii CIP 69.14]
gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio
metschnikovii CIP 69.14]
Length = 235
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ +++ ++ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN
Sbjct: 24 QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSAMTSNQALQASSLVGRDV 106
>gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
43160]
gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
43160]
Length = 140
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+G+D FL+LL+ Q+++QDP P +E ++Q A F+Q+E+ ++ + L+ A
Sbjct: 26 MGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASLVALQRSLSA 85
Query: 83 SSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+ +G ++ D +++G V ++++S +A+ VD ++PI
Sbjct: 86 GALVGHTVSYTDEGGVTVTGTVGSVRISGDEPSAV-VDGVDVPI 128
>gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
Length = 230
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + L S+ Q
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 94 ASTLIGHGV 102
>gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
Length = 192
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQEFSKSKS-KKTLG---QDAFLKLLITQIKHQDPTEPMKASE---QVAQLA 55
+N +P QQ S S +KT G +D FLKL + +HQDP M ++ Q AQL+
Sbjct: 27 VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
+ Q++ + +L+ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ +DN + + RIS+
Sbjct: 147 QLVIDNKVVSLRFVERISD 165
>gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter
pullorum MIT 98-5489]
gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter
pullorum MIT 98-5489]
Length = 379
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LG +AF++L + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++
Sbjct: 117 LGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 167
>gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601]
gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601]
Length = 223
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S S S+ + ++F+ LL QI++Q+P EPM ++ ++QLA SQ+EQSV +N L+ +
Sbjct: 19 SSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQSVAVNDNLEGI- 77
Query: 75 KSNNLAQASSYIGKNI 90
S+ L+ S+ G N+
Sbjct: 78 -SSQLSSMSAIAGLNL 92
>gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
Length = 233
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ----- 71
++ K LGQ FLKL+ Q+++QDP PM + VAQ+A FS + +MN T+
Sbjct: 28 AEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGDFVAQMAQFSSVAGISEMNQTMSSIAGQ 87
Query: 72 ----ELLKSNNLAQASSYIGKNITNAD--GSISGVVN 102
++ S N+ S + NI AD G I G ++
Sbjct: 88 MSQFQVASSVNMLGHSVMMPGNIARADNNGEIQGTLD 124
>gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
MED92]
gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
MED92]
Length = 235
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLKSNNL 79
D F++L+I Q+++QDPT P ++ + Q+A SQ+E Q+VQ ST Q +L S
Sbjct: 37 DMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESINNLTQTVQ--STSQSMLASQAA 94
Query: 80 AQASSYIGKNI 90
QASS +G+++
Sbjct: 95 LQASSMVGQSV 105
>gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH]
gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH]
Length = 223
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +DAF+KL + +++ QDPT+PM + + Q A S ME + M +L L SN L+
Sbjct: 25 LDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNL--SNVLSTT 82
Query: 83 SSY-----IGK---------NITNADGSIS 98
S + IGK N+T+ D S++
Sbjct: 83 SQFSTLSAIGKMADTGYRYVNVTDDDNSVN 112
>gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia
proteamaculans 568]
gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568]
Length = 225
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
++FL LL+ Q+K+QDPT PM+ +E +QLA + ++ ++N+TL + + SN QA
Sbjct: 30 NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLNTTLGSISGQINSNQSLQA 89
Query: 83 SSYIGKNI 90
S+ IG +
Sbjct: 90 SALIGHGV 97
>gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
Length = 234
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
L +DAF+KLL+T++++QDPT PM + Q +QLA E + +M L + LK++
Sbjct: 36 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQKLADQLKNSTN 95
Query: 80 AQASSYIGK 88
A S +GK
Sbjct: 96 MYAVSVLGK 104
>gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica
W22703]
Length = 228
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ Q
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
ASS IG+ +
Sbjct: 92 ASSLIGRGV 100
>gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia
fergusonii ATCC 35469]
gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469]
Length = 231
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
ASS IG +
Sbjct: 92 ASSLIGHGV 100
>gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72]
gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp.
BH72]
Length = 224
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QASS 84
FL LL TQ+++QDP PM+ +E +QLA S +E ++NS + +LL+S A QA++
Sbjct: 36 FLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEKLNSMMTQLLQSQASAEGLQAAA 95
Query: 85 YI-------GKNITNAD-GSISG 99
+ GKN+T D G+I G
Sbjct: 96 LVGRGVLVEGKNLTLTDAGAIGG 118
>gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas
eutropha C91]
gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91]
Length = 223
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81
Q+ FLKLL+TQ+++QDP PM +E +Q+A S + ++NSTL++L+ ++ +
Sbjct: 32 QERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNSTLEKLVSDSDARRSFE 91
Query: 82 ASSYIGKNI 90
A++ IG+++
Sbjct: 92 AANMIGRSV 100
>gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253]
gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia
fergusonii ECD227]
Length = 231
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
ASS IG +
Sbjct: 92 ASSLIGHGV 100
>gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14]
gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14]
Length = 241
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L +
Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQ 105
SN QASS +G+++ +++G +SG+ Q
Sbjct: 94 SNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQ 131
>gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter
salexigens DSM 3043]
gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM
3043]
Length = 235
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
F+ LLITQ+++QDPT+PM S+ AQLA + + ++N +L ++ + + QASS
Sbjct: 41 FMTLLITQLQNQDPTKPMDNSDMTAQLAQINTVSGIQELNDSLGDINEQIDAGKTLQASS 100
Query: 85 YIGKNI 90
IG+ +
Sbjct: 101 LIGQGV 106
>gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
Length = 241
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L +
Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQ 105
SN QASS +G+++ +++G +SG+ Q
Sbjct: 94 SNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQ 131
>gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688]
gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688]
Length = 218
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQ 81
QD F+ LLITQ+K QDP PM ++ +QLA S + ++N+T++ ++ +S+ Q
Sbjct: 27 QDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGIDKLNTTMESMISNVQSSQTYQ 86
Query: 82 ASSYIGKNI 90
AS+ IG+ +
Sbjct: 87 ASNMIGRYV 95
>gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
Length = 144
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LGQ F KLL Q++ QDP P+ ++ +AQLA FS + QS + + + L + A
Sbjct: 28 LGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQSEALVTQMGYLRADIQMQAA 87
Query: 83 SSYIGKNIT-NADGS-ISGVVNAIQVSS 108
+ +GK +T +DG ++G V +I S
Sbjct: 88 AGLVGKEVTVVSDGELVTGTVTSIAADS 115
>gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
4582]
gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
4582]
Length = 229
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
++FL LL+ Q+K+QDPT PM+ +E +QLA + + ++N+TL + + SN Q
Sbjct: 33 HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGIEKLNTTLGAISGQINSNQSLQ 92
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 93 ASALIGHGV 101
>gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
Length = 221
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K LG+D F+ LL+ +++HQDPTEPM + + + Q + + +E + N L+ L S +
Sbjct: 25 KTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLESAENTNKALESLAASLSA 84
Query: 80 AQ---ASSYIGK 88
+Q + S IGK
Sbjct: 85 SQNFSSISAIGK 96
>gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLK 75
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN +L +
Sbjct: 34 GKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLNSAMT 93
Query: 76 SNNLAQASSYIGKNI 90
SN QASS +G+++
Sbjct: 94 SNQALQASSLVGQDV 108
>gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii
DSM 12804]
gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii]
Length = 231
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FL LL+TQ+K+QDP PM+ +E +QLA S +E + +TL + +++Q
Sbjct: 29 QDRFLTLLVTQLKNQDPLNPMENAELTSQLAQISTVEGITNLKNTLLAISGQIDVSQSMN 88
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 89 AVSMIGKGV 97
>gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
Length = 149
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N T + +K +L +DAFL++L ++++QDP EP +E V+Q++ FSQ+E
Sbjct: 15 NYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQIE------ 68
Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISG 99
+LQ + S + AS+ +GK + D +G
Sbjct: 69 -SLQTVSDSISEQGASNLVGKRVILEDTDSAG 99
>gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans C54]
Length = 231
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 30 QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLKNTMLAISGQIDVSQSMN 89
Query: 82 ASSYIGKNI 90
A + IGK +
Sbjct: 90 AVAMIGKGV 98
>gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda ATCC 23685]
gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda ATCC 23685]
Length = 232
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+++QDPT P++ +E QLA S + ++N+TL + + SN Q
Sbjct: 34 QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQINSNQSLQ 93
Query: 82 ASSYIGKNI 90
ASS IG +
Sbjct: 94 ASSLIGHGV 102
>gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
Length = 228
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +PM ++ QL F+ +EQ ++ N L +L +S + A A+S
Sbjct: 35 FLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSASQSASSASATS 94
Query: 85 YIGKNITNADGSIS 98
YIGK ++ ADGS S
Sbjct: 95 YIGKTVS-ADGSAS 107
>gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 230
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
FL LL TQ+K+QDP P+ ++ A +A FS + Q+N+T +Q + ++ L S+
Sbjct: 42 FLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSDVSNSRLGNVSN 101
Query: 85 YIGK------NI-TNADGSISGVV 101
+IGK NI T+ DG+ +G V
Sbjct: 102 WIGKAGLVSSNIATSIDGTFAGQV 125
>gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 242
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ----SVQMNSTLQELLK 75
KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E S QM + L L+
Sbjct: 25 KKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGN-LNTLMT 83
Query: 76 SNNLAQASSYIGKNI---TNA-----DGSISGVV 101
S+ QAS+ +G+N+ +N +GSI GVV
Sbjct: 84 SSQALQASALVGQNVLLQSNVGFLENEGSIGGVV 117
>gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC
100599]
gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 310
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 8 NPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NP Q K KK L Q+AF+KL++ Q+KHQDP PM S+ + Q ++ + +E+
Sbjct: 11 NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70
Query: 64 VQMNSTLQELLKSNN 78
+M +TL E +SNN
Sbjct: 71 TKM-TTLME--QSNN 82
>gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum
seropedicae SmR1]
gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum
seropedicae SmR1]
Length = 240
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
Q+ FL LL+ Q+K+QDP PM S+ +Q+A S + Q+NSTL L+ + N +QA
Sbjct: 36 QNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALS 95
Query: 83 -SSYIGKNI 90
++ IG ++
Sbjct: 96 SANMIGHSV 104
>gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
Length = 279
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQE 72
K+KS+ +D FLK+++TQ+++QDPT+PM+ +E Q+AQ+A M + S +
Sbjct: 28 KNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGISS 87
Query: 73 LLKSNNLAQASSYIGKNI 90
+ S QA+ +GK +
Sbjct: 88 QIGSGQSLQATQLVGKGV 105
>gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
Length = 270
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+ KS S+ G FL LLITQ+K+QDPT PM+ +E +QLA S +E +N
Sbjct: 14 PSSYHTKKSGSEDIKGN--FLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGIETLNK 71
Query: 69 TLQELLKSNNLAQ---ASSYIGKNI 90
T+ ++ + +Q ASS +G +
Sbjct: 72 TVNNIVGQIDQSQALRASSLVGHGV 96
>gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila
LSv54]
gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea
psychrophila LSv54]
Length = 248
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74
S T+G+ FL LL+ Q+++QDP P + +E AQLA FS +EQ + +N + ++
Sbjct: 26 SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85
Query: 75 --KSNNLAQASSYIGKNI 90
S+N+A ++ IGK +
Sbjct: 86 TSNSDNIALLNT-IGKEV 102
>gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 242
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKS 76
KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + ++ +L L+ S
Sbjct: 26 KKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMTS 85
Query: 77 NNLAQASSYIGKNI--------TNADGSISGVV 101
+ QAS+ +G+N+ DGS+ GVV
Sbjct: 86 SQALQASALVGQNVLLQSNVGYLEKDGSLPGVV 118
>gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii
ATCC 43553]
gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii
ATCC 43553]
Length = 232
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FLKLL TQ+++QDP PM+ +E +QLA + +E + ST+Q + +++Q
Sbjct: 30 QDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVEGISNLKSTIQAISGQIDVSQSMN 89
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 90 AVSMIGKGV 98
>gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 233
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
++FL LL+ Q+K+QDPT P++ +E +QLA + + ++N+TL + + SN QA
Sbjct: 36 NSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTVSGIEKLNTTLGSISGQINSNQSLQA 95
Query: 83 SSYIGKNI 90
SS IG +
Sbjct: 96 SSLIGHGV 103
>gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
Length = 227
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ LL + +
Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMVLLDNMQVLS 98
Query: 82 ASSYIGKNI-TNAD 94
+ +G+ + NAD
Sbjct: 99 TAGLVGQTVYVNAD 112
>gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio
alginolyticus 40B]
gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio
alginolyticus 40B]
Length = 227
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ LL + +
Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKTMQQSMVLLDNMQVLS 98
Query: 82 ASSYIGKNI-TNAD 94
+ +G+ + NAD
Sbjct: 99 TAGLVGQTVYVNAD 112
>gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th
initiation of hook assembly) [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th
initiation of hook assembly) [Photorhabdus asymbiotica]
Length = 232
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 14/85 (16%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
F++LLI Q+K+QDPT PM+ +E A LA + +E ++N+T+ + + +N Q S+
Sbjct: 37 FMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGIEKLNTTVGSIVGQINNNQSLQVSA 96
Query: 85 YIGKNI----------TN-ADGSIS 98
IG+ + TN DGSIS
Sbjct: 97 LIGRGVMIPGDTILVGTNEKDGSIS 121
>gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
Length = 226
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG + FLKL+ Q+ +QDP +PM S ++Q+A F ++ + ++ +E+ L+SN
Sbjct: 30 LGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSGSLQSNQA 89
Query: 80 AQASSYIGKNI--------TNADGSISGVV 101
QAS +G+++ A GSI G V
Sbjct: 90 LQASGLVGRSVLVPSAEGSLEAGGSIRGAV 119
>gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila]
Length = 241
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 11/93 (11%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKS 76
KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + ++ +L L+ S
Sbjct: 25 KKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMTS 84
Query: 77 NNLAQASSYIGKNI--------TNADGSISGVV 101
+ QAS+ +G+N+ DGS+ GVV
Sbjct: 85 SQALQASALVGQNVLLQSNVGYLEKDGSLQGVV 117
>gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
16294]
gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
16294]
Length = 220
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K LG+D F+KLL+ Q+++QDPTEPM + + Q + + +E + + L++L S
Sbjct: 24 KGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLGN 83
Query: 80 AQASSYI 86
AQ S I
Sbjct: 84 AQQFSTI 90
>gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp.
Group II '5-way CG']
Length = 276
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN-- 77
++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + +
Sbjct: 30 RQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAHDGAD 89
Query: 78 -NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
N ++G+ +T + G NA ++ +G ++T
Sbjct: 90 ANKMMMVGFLGQRVT-----MKG--NAFRLDPSGNVSLT 121
>gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36]
gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36]
Length = 218
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 8 NPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
NP Q S+ + LG ++ FL++++ QIK+QDP +P+ +E V+QLA FS +E +
Sbjct: 11 NPAQT--SEVTANSALGLKNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMVEGVEGL 68
Query: 67 N---STLQELLKSNNLAQASSYIGKNI 90
S+ E+L + + Q+++ IG +
Sbjct: 69 RAGQSSQAEMLYTQQVLQSTALIGTTV 95
>gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas
macleodii ATCC 27126]
gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas
macleodii str. 'Deep ecotype']
Length = 228
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
+++ L Q+ F +L Q+ +QDPT P+ + VAQ+ F+ + Q+N + +
Sbjct: 26 TEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAASMT 85
Query: 76 SNNLAQASSYIGKNI---------TNADGSISGVV 101
SN QASS IG+N+ N ISGV+
Sbjct: 86 SNQALQASSLIGQNVLVQGNVGYMANEGDGISGVI 120
>gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium
wasabiae WPP163]
gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163]
Length = 224
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91
Query: 82 ASSYIGKNI 90
A++ IG+++
Sbjct: 92 ATTLIGRSV 100
>gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium
sp. Marseille]
gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp.
Marseille]
Length = 225
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
KS QD FLKLL+TQ+++QDP P+ ++ +QLA S + ++N TL+ L+
Sbjct: 27 KSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTLESLMGNY 86
Query: 75 KSNNLAQASSYIGKNI 90
+S L QAS+ I +
Sbjct: 87 QSAQLLQASNMIDHGV 102
>gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia
tasmaniensis Et1/99]
gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
tasmaniensis Et1/99]
Length = 223
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LL+TQ+K+QDPT PM S+ QLA + + ++N+TL + + S Q
Sbjct: 31 QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 91 ASTLIGHGV 99
>gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium
tetani E88]
gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium
tetani E88]
Length = 174
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L ++AFL++L ++ HQDP +E V Q+A F+ +EQ +N+T++ A A
Sbjct: 32 LDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLNNTMR-------FAGA 84
Query: 83 SSYIGKN--ITNAD-------GSISGV 100
+S IGK + N D G I+GV
Sbjct: 85 TSLIGKYAMVNNTDTYGNLYHGVITGV 111
>gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha
JMP134]
gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134]
Length = 226
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S S S L Q FLK+L+TQ+ +QDP PM ++ +QLA S + MNSTL +LL
Sbjct: 25 SGSASAADL-QSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTLTQLL 83
Query: 75 KSNNLAQA---SSYIGKNI 90
+ ++A ++ IG+ +
Sbjct: 84 NQTSASRAMDSAALIGRTV 102
>gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
Length = 236
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S LGQ FLKL+ITQ+ +QDPT P++ + +Q+A FS + ++ S+ + L
Sbjct: 32 STGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGIEELTSSFETLS 91
Query: 75 KS---NNLAQASSYIGKNI 90
K+ +A++ +G+++
Sbjct: 92 KTLLQGQTVEAATLVGQSV 110
>gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W]
gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W]
Length = 190
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71
S K+ + +D FLKL + KHQDP M ++ + Q A S MEQ M LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQVNNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
Length = 233
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
K+ LGQ FLKL+ Q+++QDP PM + +AQ+A FS + +M+ T+ + +
Sbjct: 31 KEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGISKMSETMSGIADQMGQ 90
Query: 77 NNLAQASSYIGK------NITNAD--GSISGVV 101
+A + +Y+G N+ AD G I G +
Sbjct: 91 FRVASSVNYLGHSVMIPGNLARADDNGEIHGAI 123
>gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii
SS-2004]
gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
bovienii SS-2004]
Length = 231
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
+D FL LL+ Q+K+QDPT PM+ +E QLA S ++ ++N TL + ++ N Q
Sbjct: 34 KDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGVEKLNKTLGAVVGQMEGNQAMQ 93
Query: 82 ASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAIT-VDNTEIPI 123
+ IG+ + I SG N I S G DN +I I
Sbjct: 94 TTMLIGRTVMIPGDKILVGSGEENGISTSPFGFELTRPADNIKITI 139
>gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium
atrosepticum SCRI1043]
gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum
SCRI1043]
Length = 224
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91
Query: 82 ASSYIGKNI 90
AS+ IG ++
Sbjct: 92 ASTLIGHSV 100
>gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter
acinonychis str. Sheeba]
gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str.
Sheeba]
Length = 292
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli
UMN026]
gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1412]
gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1302]
gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299]
gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026]
gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1412]
gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1302]
gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605]
gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli AA86]
gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE
PC73]
gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas
albilineans]
Length = 226
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L Q FLKL+ Q++HQDP +PM S+ V+Q+A S ++ +N T+ L + ++ +
Sbjct: 32 LKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQV 91
Query: 80 AQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118
+ ++ IG + +DG+ G+V A +S G+ +TV +
Sbjct: 92 LRGANLIGHKVLVPSASLPLGSDGAAGGMVAA---TSAGVVNLTVSD 135
>gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC869]
gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. FRIK966]
gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC869]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli
SMS-3-5]
gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli
IAI39]
gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39]
gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae
Sd197]
gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae
1617]
gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197]
gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae
1617]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli
CFT073]
gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli
83972]
gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1]
gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1]
gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073]
gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli
83972]
gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1]
gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1]
gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972]
gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82]
gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli
O83:H1 str. NRG 857C]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC
3083-94]
gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94]
gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella
dysenteriae CDC 74-1112]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. Sakai]
gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli
UTI89]
gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli
536]
gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli
APEC O1]
gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS]
gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4113]
gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4401]
gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4501]
gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4486]
gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4196]
gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4076]
gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC508]
gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli
ATCC 8739]
gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11]
gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. EC4024]
gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4206]
gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4045]
gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4042]
gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4115]
gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli
O127:H6 str. E2348/69]
gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
TW14588]
gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli
S88]
gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. TW14359]
gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1]
gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1]
gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1]
gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1]
gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W]
gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str.
Sakai]
gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89]
gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536]
gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1]
gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS]
gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4196]
gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4113]
gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4076]
gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4401]
gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4486]
gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4501]
gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC508]
gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11]
gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4206]
gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4045]
gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4042]
gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4115]
gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
TW14588]
gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88]
gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str.
TW14359]
gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15]
gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042]
gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034]
gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1]
gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1]
gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1]
gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1]
gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W]
gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli
UM146]
gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W]
gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1]
gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3]
gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3]
gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii
ATCC 9905]
gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. EC1212]
gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli WV_060327]
gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli EC4100B]
gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. G5101]
gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli
O157:H- str. 493-89]
gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli
O157:H- str. H 2687]
gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli
O55:H7 str. USDA 5905]
gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. LSU-61]
gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68]
gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11]
gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252]
gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263]
gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2]
gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1]
gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. 1125]
gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. 1044]
gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli
ED1a]
gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli
NC101]
gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a]
gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli
NC101]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22]
gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171]
gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
12009]
gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22]
gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171]
gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
12009]
gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354]
gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B
str. REL606]
gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1]
gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia
coli BL21(DE3)]
gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B
str. REL606]
gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli
BL21(DE3)]
gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1]
gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489]
gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863]
gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509]
gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli
E24377A]
gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
MG1655]
gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
W3110]
gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5
str. 8401]
gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
DH10B]
gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli
SE11]
gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli
IAI1]
gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli
55989]
gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952]
gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9]
gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp.
4_1_40B]
gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
11368]
gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088]
gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7]
gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1]
gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1]
gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1]
gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1]
gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1]
gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7]
gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718]
gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591]
gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9]
gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD
gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
MG1655]
gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr.
W3110]
gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str.
8401]
gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
DH10B]
gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11]
gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989]
gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1]
gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952]
gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
11368]
gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1]
gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088]
gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1]
gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1]
gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1]
gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1]
gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7]
gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1]
gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7]
gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC
H10407]
gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli
DH1]
gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431]
gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14]
gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G]
gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357]
gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520]
gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482]
gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3]
gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167]
gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718]
gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591]
gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9]
gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli UMNK88]
gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272]
gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora
CFBP1430]
gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
49946]
gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
49946]
gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora
CFBP1430]
Length = 223
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 91 ASTLIGHGV 99
>gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 EDL933]
gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia
coli O157:H7 str. EDL933]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae
155-74]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a
str. 2457T]
gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str.
2457T]
gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str.
2457T]
gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri
4343-70]
gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671]
gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71]
gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218]
gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
11128]
gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
11128]
gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei
Ss046]
gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei
Ss046]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli
H736]
gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736]
gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp.
638]
gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638]
Length = 236
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + L + Q
Sbjct: 36 QGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQLNDSQSLQ 95
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 96 ASNLIGHGV 104
>gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas
atlantica T6c]
gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c]
Length = 228
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 14/113 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
+S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + +
Sbjct: 25 ESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFATSM 84
Query: 75 KSNNLAQASSYIGKNI--------TNADG-SISGVVNAIQVSSTGLTAITVDN 118
SN QASS IG+ + ++G +SGVV I S+T T IT++N
Sbjct: 85 TSNQALQASSLIGQQVLLQGDVAHMASEGQGVSGVV--INDSTTLNTKITIEN 135
>gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri
2747-71]
Length = 231
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
BAA-2158]
Length = 223
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 91 ASTLIGHGV 99
>gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017]
Length = 229
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae
Ep1/96]
gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
pyrifoliae Ep1/96]
Length = 224
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASTLIGHGV 100
>gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37]
gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37]
Length = 188
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
+L Q+++QDP P+ ++E QLA FS +EQ VQ N L+ + L N+L + +IG
Sbjct: 1 MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60
Query: 88 -KNITNADGSISGV 100
+ + A GV
Sbjct: 61 MEGLVRAPAMFDGV 74
>gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium
violaceum ATCC 12472]
gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium
violaceum ATCC 12472]
Length = 224
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
Q+ FL LL Q+ QDP PM S+ +Q+A SQ+ +N T+Q+L+ S N +Q
Sbjct: 29 QNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSLNLTMQQLVASQNASQSMM 88
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 89 ATGMIGNNV 97
>gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira
multiformis ATCC 25196]
gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC
25196]
Length = 222
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 9 PTQQEFSKSKSKKTLG------QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
PT F+ ++ T QD FLKLL+TQ+K+QDP P+ ++ QLA S +
Sbjct: 9 PTSNPFAAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQISTVNG 68
Query: 63 SVQMNSTLQELLKSNNLA---QASSYIGKNI 90
++N+T++ + S QA+ IG+ +
Sbjct: 69 VERLNATIRTIADSFTAGQSLQAAGMIGREV 99
>gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
Length = 233
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQE 72
K+ S + +G D FL L++ Q+++QDP++PM + + QLA F + ++N S L
Sbjct: 21 KAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNAGFSGLSN 80
Query: 73 LLKSNNLAQASSYIGKNI 90
L QA++ +G+++
Sbjct: 81 ALSGGQALQAAALVGRSV 98
>gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301]
Length = 642
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 99
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+D FL+LL+ QIK+QDP P + + QLA F Q+EQS+ M
Sbjct: 30 KDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72
>gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
12163]
Length = 226
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 34 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 94 ASTLIGHGV 102
>gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1]
gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1]
Length = 231
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGYGV 100
>gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 228
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + +
Sbjct: 25 DSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFATSM 84
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
SN QASS IG+ + + G V + G++ + +++T + T I I N
Sbjct: 85 TSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTTT-LNTKITIEN 135
>gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis YPIII]
gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis PB1/+]
gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 32953]
gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII]
gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+]
Length = 228
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91
Query: 82 ASSYIGKNI 90
A+S IG+ +
Sbjct: 92 ATSLIGRGV 100
>gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 225
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 16/91 (17%)
Query: 25 QDAFLKLLITQIKHQDPTEPMK---ASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA- 80
Q+ FLKLL+TQ+K+QDP P+ + Q++Q++ + +E ++N+TL+ LL + N
Sbjct: 34 QNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIE---KLNTTLETLLNTFNDGQ 90
Query: 81 --QASSYIGKNITNA-------DGSISGVVN 102
QA+ +GK++ A G SG VN
Sbjct: 91 SMQAAGLLGKSVLVAGSQLALTGGRASGGVN 121
>gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617]
Length = 224
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASTLIGHGV 100
>gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM
5692]
gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM
5692]
Length = 227
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNL 79
+LG+ FL LL+TQ+++QDP P +E AQLA FS +EQ ++ +++ L +K+
Sbjct: 28 SLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSLEQLTNISESMEGLDAMKTAYE 87
Query: 80 AQAS-SYIGKNI 90
A+ S +G+N+
Sbjct: 88 QNAALSMLGRNV 99
>gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 321
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+
Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100
Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110
+ + ++ ++ NADG +G++ + + G
Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132
>gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
Length = 230
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK--SNNLAQAS 83
D FL LL TQ+K+QDP P+ +++ Q+ + +EQ + N L+ L+ SN ++ A
Sbjct: 25 DTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGVEQQLLTNDLLKSLVSNTSNGVSTAV 84
Query: 84 SYIGKNITNA 93
S IGK + A
Sbjct: 85 SLIGKEVRAA 94
>gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
Length = 226
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
++ S S +L + FLKL+I Q+K QDPT+P +++ + S + ++QM STL+ +
Sbjct: 18 YTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMISTLESI 77
Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108
+ +++ A+ IG +I N + SG + + V S
Sbjct: 78 STAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVES 115
>gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
Alaska E43]
gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
Alaska E43]
Length = 321
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+
Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100
Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110
+ + ++ ++ NADG +G++ + + G
Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132
>gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans A8]
gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans A8]
Length = 232
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FLKLL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 30 QDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGITNLKNTMLAISGQIDVSQSMN 89
Query: 82 ASSYIGKNI 90
A + IGK +
Sbjct: 90 AVAMIGKGV 98
>gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
Eklund 17B]
gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
Eklund 17B]
Length = 321
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N T+
Sbjct: 41 SKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLNDTMSTFAHQ 100
Query: 77 NNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTG 110
+ + ++ ++ NADG +G++ + + G
Sbjct: 101 QLVGKGATM---DLINADGEYYTGIIRGVSKDNYG 132
>gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB]
gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB]
Length = 224
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDA---FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA +
Sbjct: 7 VNDKLDPTVLSSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+ ++N+TL + + ++ Q+S+ IG +
Sbjct: 67 LSGIEKLNTTLGSISGQINTSQSLQSSTLIGHGV 100
>gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277]
gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277]
Length = 234
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
L +DAF+KLL+T++++QDPT PM + Q +QLA E + +M L + LK++
Sbjct: 36 LDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQKLADQLKNSTN 95
Query: 80 AQASSYIGKNITNADGSISGVV 101
A +GK D SG+V
Sbjct: 96 MYAVGVLGKMAKIGD---SGIV 114
>gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
ATCC 35316]
gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
ATCC 35316]
Length = 236
Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + S+ Q
Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDSSQSLQ 95
Query: 82 ASSYIGKNI 90
A++ IG +
Sbjct: 96 AANLIGHGV 104
>gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica
OS145]
gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica
OS145]
Length = 227
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E + ++ L Q+ F KLL Q+ QDPT+P+ + ++Q+ FS E Q++S +
Sbjct: 22 EAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFTQ 81
Query: 73 L---LKSNNLAQASSYIGKNI 90
+ SN QAS+ +G+++
Sbjct: 82 FTQNMSSNQALQASTMVGRDV 102
>gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
Length = 235
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 10 TQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
T++ S S +T D +FL LL TQ+ HQ+P +P+ ++ QL F+Q+EQ ++
Sbjct: 21 TEEPVKPSASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKG 80
Query: 67 NSTLQELL---KSNNLAQASSYIGKNITNADGS 96
N+ L+ L+ KS QA +G+ DGS
Sbjct: 81 NTLLERLVEAQKSTQSTQALMLVGRTAV-VDGS 112
>gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 232
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90
++N+TL + + ++ QA++ IG +
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101
>gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
Length = 230
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + + Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGIEKLNTTLGSISGQIDNGQSLQ 92
Query: 82 ASSYIGKNI 90
A++ IG +
Sbjct: 93 ATALIGHGV 101
>gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 236
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q
Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95
Query: 82 ASSYIGKNI 90
A+S IG +
Sbjct: 96 AASLIGHGV 104
>gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 224
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91
Query: 82 ASSYIGKNI 90
A++ IG ++
Sbjct: 92 ATTLIGHSV 100
>gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas
haloplanktis TAC125]
gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly
[Pseudoalteromonas haloplanktis TAC125]
Length = 225
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+Q SK KS L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS
Sbjct: 20 KQAASKDKSD-ALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTSFTMAEGISNLNSNF 78
Query: 71 QEL---LKSNNLAQASSYIGK 88
+ L + SN+ QAS+ +GK
Sbjct: 79 EALAASMTSNSALQASTLVGK 99
>gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
Length = 227
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+
Sbjct: 39 ENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQ 86
>gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter
pylori SouthAfrica7]
Length = 382
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001]
gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001]
Length = 223
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L K+ + + AS
Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKAASASSASG 91
Query: 85 YIGKNITNADGS 96
IG+ IT ADG+
Sbjct: 92 LIGRTIT-ADGA 102
>gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas
sp. SM9913]
gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas
sp. SM9913]
Length = 225
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
K + L Q+ F LL Q+ +QDP++P + +AQ+ F+ E +NS + L
Sbjct: 24 KKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESLAA 83
Query: 74 -LKSNNLAQASSYIGK 88
+ SN+ QAS+ +GK
Sbjct: 84 SMTSNSALQASTLVGK 99
>gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 224
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91
Query: 82 ASSYIGKNI 90
A++ IG ++
Sbjct: 92 ATTLIGHSV 100
>gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71
S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M LQ
Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ + L ++GK I N ++G V ++++ + VDN + + R
Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp.
T7-7]
gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp.
T7-7]
Length = 228
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---Q 81
QD FL LL+TQ+++QDP PM ++ +Q+A S + Q+N+TL L +++ Q
Sbjct: 31 QDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNGINQLNTTLLALSGQMDVSQSMQ 90
Query: 82 ASSYIGKNI 90
A+ IGK +
Sbjct: 91 AAGLIGKEV 99
>gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 226
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ M+S +Q
Sbjct: 38 QNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSMENMSSLMQ 84
>gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 227
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 35 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 94
Query: 82 ASSYIGKNI 90
A++ IG ++
Sbjct: 95 ATTLIGHSV 103
>gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ + L ++GK I N ++G V ++++ + VDN + + R
Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 232
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90
++N+TL + + ++ QA++ IG +
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101
>gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus
thuringiensis str. Al Hakam]
gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB102]
gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al
Hakam]
gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB102]
gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Ames]
gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Sterne]
gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0442]
gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0193]
gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0465]
gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0389]
gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0174]
gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis
Tsiankovskii-I]
gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB108]
gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus
AH820]
gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0248]
gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis
str. A1055]
gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Western North America USA6153]
gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Kruger B]
gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Australia 94]
gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI]
gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. Ames]
gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. Sterne]
gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0193]
gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0442]
gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0389]
gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0465]
gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0174]
gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis
Tsiankovskii-I]
gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB108]
gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus
AH820]
gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0248]
gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis
str. CI]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD
gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD
gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 232
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90
++N+TL + + ++ QA++ IG +
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101
>gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str.
A2012]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
14579]
gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550]
gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus
thuringiensis BMB171]
gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC
14579]
gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550]
gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus
thuringiensis BMB171]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ + L ++GK I N ++G V ++++ + VDN + + R
Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis
Angola]
gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
Length = 225
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88
Query: 82 ASSYIGKNI 90
A+S IG+ +
Sbjct: 89 ATSLIGRGV 97
>gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis
KIM 10]
gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis
biovar Microtus str. 91001]
gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis
Antiqua]
gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis
Nepal516]
gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis
Pestoides F]
gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis
CA88-4125]
gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis
FV-1]
gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis
CO92]
gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis
Pestoides A]
gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis
Nepal516]
gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis
Z176003]
gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10]
gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Microtus str. 91001]
gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis
Nepal516]
gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis
Antiqua]
gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92]
gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis
Pestoides F]
gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis
CA88-4125]
gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis
Nepal516]
gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis
Pestoides A]
gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis
D106004]
gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis
D182038]
gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis
Z176003]
gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 225
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88
Query: 82 ASSYIGKNI 90
A+S IG+ +
Sbjct: 89 ATSLIGRGV 97
>gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
8052]
gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
8052]
Length = 339
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
K+ T+ +++FLK+L Q+ + DPT+ +S V+Q+A F+ MEQ +N+T+ +
Sbjct: 30 KTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASMEQMQNLNTTMSD 84
>gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676]
gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQ 71
S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ M LQ
Sbjct: 43 SNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ + L ++GK I N ++G V ++++ + VDN + + R
Sbjct: 103 STMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDVQLIVDNQVVSLRFVER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 232
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI 90
++N+TL + + ++ QA++ IG +
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGV 101
>gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus
E33L]
gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L]
gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 190
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0488]
gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. CDC 684]
gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Vollum]
gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0488]
gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. CDC 684]
Length = 198
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQ 71
S K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ
Sbjct: 43 STQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQ 102
Query: 72 ELLKSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ S L ++GK ++N ++G V ++++ + VDN + + R
Sbjct: 103 STMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIER 162
Query: 129 ISN 131
+S+
Sbjct: 163 VSD 165
>gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3]
Length = 224
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+
Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73
Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++
Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGSDV-KVVVDGKQYDLSAVKA 132
Query: 129 ISN 131
IS+
Sbjct: 133 ISD 135
>gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
Length = 232
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 92
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 93 ASTLIGHGV 101
>gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
Length = 224
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+
Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73
Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++
Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGSDV-KVVVDGKQYDLSAVKA 132
Query: 129 ISN 131
IS+
Sbjct: 133 ISD 135
>gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 308
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
LGQ+AFL +L+ ++ + DPT+ ++ V Q+A F+ +EQ +N+T++
Sbjct: 25 LGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQLNNLNTTMKNF 75
>gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
Length = 237
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ QI +QDP PM ++ +Q+A + + +N T++ L S + Q
Sbjct: 32 QDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTGIENLNQTVKNLGNQFTSMQVLQ 91
Query: 82 ASSYIGKNITNADGSIS 98
++ +G+ + AD ++S
Sbjct: 92 GTALVGREVMVADTTLS 108
>gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
Length = 236
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q
Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102
Query: 82 ASSYIGKNI 90
S+ IG+++
Sbjct: 103 LSTLIGRHV 111
>gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a]
Length = 224
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Q+
Sbjct: 21 FKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQAQ-------QDN 73
Query: 74 LKSNNLAQASSYIGKNIT-NA---DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
LK + A+ +GK +T NA DG+ +SGV + +S + + + VD + ++
Sbjct: 74 LKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVSISGSDV-KVVVDGKQYDLSAVKA 132
Query: 129 ISN 131
IS+
Sbjct: 133 ISD 135
>gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
Length = 232
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 92
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 93 ASTLIGHGV 101
>gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 236
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q
Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102
Query: 82 ASSYIGKNI 90
S+ IG+++
Sbjct: 103 LSTLIGRHV 111
>gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD
gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp.
(strain APS)
gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
Length = 236
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LLI QIK+QDPT+P+K S+ +QLA + ++N+T+ + + N Q
Sbjct: 43 QKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASGMQKLNNTVDQFSNQISKNQNIQ 102
Query: 82 ASSYIGKNI 90
S+ IG+++
Sbjct: 103 LSTLIGRHV 111
>gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
1131]
gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
1131]
Length = 285
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+D FLK+++TQ+++QDPT+PM+ ++ Q+AQ+A M + S + + + S Q
Sbjct: 35 RDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLESMNKLSDSVSGISQQIGSGQSLQ 94
Query: 82 ASSYIGKNI 90
A+ +GK +
Sbjct: 95 ATQLVGKGV 103
>gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter
pylori Sat464]
Length = 309
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus
mobilis Nb-231]
gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus
mobilis Nb-231]
Length = 221
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLK+++ Q+++Q+P +PM E + Q+A F+ Q+ S+ Q ++SN Q
Sbjct: 28 QDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFTSASGIEQLQSSFQAFQTNMQSNLALQ 87
Query: 82 ASSYIGKNI 90
A+S +G+ +
Sbjct: 88 AASLVGRQV 96
>gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri
ATCC BAA-895]
gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895]
Length = 232
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 93 ASTLIGHGV 101
>gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
Length = 227
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
TQ E S + + FLK+L Q+++QDP P++ ++ QLA FS +EQ V+ N
Sbjct: 21 TQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTDFAVQLATFSTVEQQVRTNDL 80
Query: 70 LQEL 73
L L
Sbjct: 81 LGAL 84
>gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 190
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELL 74
K+ + +D FLKL + +HQDP M ++ Q AQL++ Q++ + LQ +
Sbjct: 46 KTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQSTM 105
Query: 75 KSNNLAQASSYIGK---NITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S L ++GK ++N ++G V ++++ + VDN + + R+S+
Sbjct: 106 YSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVDNQVVSLRFIERVSD 165
>gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus]
gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633]
gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus 10329]
Length = 227
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q
Sbjct: 39 QNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQ 85
>gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter
pylori Cuz20]
Length = 319
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
14796]
gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
14796]
Length = 139
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
+AFL LLI Q+K+QDP + M +E + +L+ + +Q M++++Q + + N A++
Sbjct: 32 NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91
Query: 86 IGKNI--TNADGS 96
IGK I T AD S
Sbjct: 92 IGKKIQYTAADNS 104
>gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
Length = 375
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ N Q+
Sbjct: 28 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEESKKTMKEVA---NAMQS 84
Query: 83 SSYIGKNITNADGSI--------SGVVNAIQVSS 108
S +++ + G + G+ N+++ S+
Sbjct: 85 SKETNQSLKDFQGKLKDTLEHLDKGMDNSLKASA 118
>gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii
LLAP12]
gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii
LLAP12]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+GQ ++K+ + ++ +QDP +P+ E +AQ+A FS ++Q+ N L +L++ + +
Sbjct: 10 VGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLIQLHYGNRG 69
Query: 83 SSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITV 116
S +G + IT +G G+V AI+ + + + +
Sbjct: 70 LSLLGHSVKITGEEG--YGLVEAIRFTEEQMPEVRI 103
>gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter
sakazakii ATCC BAA-894]
gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894]
Length = 226
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL ++ S +LA
Sbjct: 34 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLA 93
Query: 81 QASSYIGKNI 90
AS+ IG +
Sbjct: 94 -ASALIGHGV 102
>gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter
pylori Shi470]
gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter
pylori Shi470]
Length = 324
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii
Sb227]
gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227]
gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella
flexneri CDC 796-83]
gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74]
Length = 231
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E Q+AQ++ S +E+ M ++ + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNI 90
AS+ IG +
Sbjct: 92 ASNLIGHGV 100
>gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter
turicensis z3032]
gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis
z3032]
Length = 202
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL ++ S +LA
Sbjct: 10 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQIDNSQSLA 69
Query: 81 QASSYIGKNI 90
AS+ IG +
Sbjct: 70 -ASALIGHGV 78
>gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia
vietnamiensis G4]
gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4]
Length = 248
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+NS+L L L + Q
Sbjct: 39 QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLSSLSTQLAAGQQTQ 98
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 99 AALLIGTNV 107
>gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
Length = 220
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84
F+ LLIT++++Q+P EP ++ V QL ++ EQ +N+ L L S N +S+
Sbjct: 31 FMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNSSN 90
Query: 85 YIGKNIT 91
YIG+ +T
Sbjct: 91 YIGQTVT 97
>gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia
billingiae Eb661]
gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
billingiae Eb661]
Length = 223
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LL+TQ+++QDPT PM S+ QLA + + ++N+TL + + S Q
Sbjct: 31 QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90
Query: 82 ASSYIGKNI 90
A++ IG +
Sbjct: 91 ATTLIGHGV 99
>gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
Length = 223
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N TL+ + S + Q
Sbjct: 36 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTSLQVLQ 95
Query: 82 ASSYIGKNI 90
+S +G N+
Sbjct: 96 GASMVGHNV 104
>gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis
ATCC 43879]
gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis
ATCC 43879]
Length = 507
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ ++
Sbjct: 28 LDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVEMQEENKKTMKEVAQA 81
>gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
Length = 248
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79
L Q+ FL LL Q+ +QDP +P+ + +AQ+A F+ ++ +MN +L + S+
Sbjct: 41 LKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGSLNAAMTSSQA 100
Query: 80 AQASSYIGKNI--------TNADGSISGVV 101
QASS +G+++ + +G I+G+V
Sbjct: 101 LQASSLVGQDVLVPGNEGFKSVEGGIAGMV 130
>gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp.
MED121]
gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp.
MED121]
Length = 230
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+K SK D F+ L I Q+K QDPT+P ++ V+Q+A S +E+ +++ L+ +
Sbjct: 30 AKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEELSTISTQLESMT 89
Query: 74 --LKSNNLAQASSYIGKNI 90
L S+ AS+ +G+ I
Sbjct: 90 SALTSSQAISASTLVGQKI 108
>gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter
pylori HPKX_438_AG0C1]
Length = 311
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
Length = 183
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+L Q+K+QDP P+++++ QLA FS +EQ+V N L+ L ++ +S++GK +
Sbjct: 1 MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60
>gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae
12198]
gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter
mustelae 12198]
Length = 279
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+
Sbjct: 29 LDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEV 79
>gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter
pylori Gambia94/24]
Length = 301
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter
pylori B38]
gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38]
Length = 306
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
Length = 222
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
++FL LL QI +QDP P+ +++ V+QLA +Q+EQS+ N++L+++
Sbjct: 30 NSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQI 77
>gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7]
gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7]
Length = 256
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+Q ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 44 PSQSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 102
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127
>gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27]
gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27]
Length = 316
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter
pylori 26695]
gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori
26695]
Length = 301
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter
pylori PeCan4]
gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter
pylori PeCan4]
Length = 306
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 236
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q
Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95
Query: 82 ASSYIGKNI 90
A++ IG +
Sbjct: 96 AANLIGHGV 104
>gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella
parapertussis 12822]
gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella
parapertussis]
Length = 234
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 88 AVSMIGKGV 96
>gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter
pylori India7]
Length = 306
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
Length = 341
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis
HS1]
gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis
HS5]
gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis
HS5]
gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis
HS1]
Length = 446
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
L +DAF+KL + Q+K+QDPT PM+ + ++Q A SQ+E + ++E+
Sbjct: 40 LNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVEMQEENKKAMKEV 90
>gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella
bronchiseptica RB50]
gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella
bronchiseptica RB50]
Length = 234
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 88 AVSMIGKGV 96
>gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae
BGR1]
gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1]
Length = 258
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+NS+L L + + Q
Sbjct: 38 QQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSLSSLSSQITAGQQTQ 97
Query: 82 ASSYIGKNI 90
A+ IG N+
Sbjct: 98 AALLIGSNV 106
>gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella
pertussis Tohama I]
gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis
Tohama I]
gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella
pertussis CS]
Length = 234
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ + +++Q
Sbjct: 28 QDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMD 87
Query: 82 ASSYIGKNI 90
A S IGK +
Sbjct: 88 AVSMIGKGV 96
>gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris
BisB18]
gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris
BisB18]
Length = 218
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84
FL LL+T++++Q+P +P ++ V+Q+ ++ EQ +N+ L L S N +++
Sbjct: 29 FLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNSTN 88
Query: 85 YIGKNIT 91
YIG+ +T
Sbjct: 89 YIGQTVT 95
>gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
Length = 220
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP PM +E +Q+A + + Q+N T+ + + + Q
Sbjct: 30 QDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTGIQQLNQTMASMSSQFSAMQVLQ 89
Query: 82 ASSYIGKNI 90
+S IG+ +
Sbjct: 90 GTSMIGRTV 98
>gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter
pylori F16]
Length = 311
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 908]
gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 2018]
gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 2017]
Length = 325
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
Length = 226
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M S +Q
Sbjct: 38 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMASMMQ 84
>gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d]
Length = 316
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter
pylori Lithuania75]
Length = 316
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter
pylori F57]
Length = 321
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
Length = 324
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVANAMKSN 85
>gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
Eklund]
gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
Eklund]
Length = 274
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A
Sbjct: 64 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM-------SFNSA 116
Query: 83 SSYIGKNI 90
S +GK +
Sbjct: 117 GSMVGKTV 124
>gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter
pylori HPAG1]
gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1]
Length = 327
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A]
Length = 316
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83]
Length = 319
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
Length = 239
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 3 INTEVNPT---QQEFS-------KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA 52
+ T VNPT + F+ K+KS+ QD FLKLLITQ++ QDP P+ + +
Sbjct: 1 MTTAVNPTSSTEDPFAGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTS 60
Query: 53 QLAVFSQMEQSVQMNSTLQEL 73
Q+A S ++ ++NS++ L
Sbjct: 61 QMAQISSVQGIEKLNSSVSAL 81
>gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555]
gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016]
gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555]
gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 265
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
Query: 20 KKTLGQDA----FLKLLITQIKHQDPTEPMK--ASEQVAQLAVFSQMEQSVQMNSTLQEL 73
KK G D FLK+L ++++QDPT+ ++E ++QLA FS ++Q + +N+T
Sbjct: 62 KKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSALQQMMNLNNT---- 117
Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
N + A+S + K +T +D G N I G+ D+ E+ + TGI
Sbjct: 118 ---NKVTTANSLVNKYVTLSDRDSEG--NYITGKVVGVVK-DGDDVELKLITGI 165
>gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp.
ANA-3]
gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3]
Length = 259
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 47 PTSSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 105
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
L ++ S+ QAS +G+ + + I S GL + + +IP+
Sbjct: 106 QIVNLNSVMTSSQALQASGLVGRKVL-----LPTDTGYISAESPGLNGVISTSEKIPVIN 160
Query: 126 GIRISN 131
+RI +
Sbjct: 161 -VRIED 165
>gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter
pylori P12]
gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12]
Length = 339
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio
harveyi 1DA3]
gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio
harveyi 1DA3]
Length = 228
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86
>gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales
bacterium TW-7]
gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales
bacterium TW-7]
Length = 226
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS + L + SN+
Sbjct: 32 LTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESLAASMTSNSA 91
Query: 80 AQASSYIGK 88
QAS+ +GK
Sbjct: 92 LQASTLVGK 100
>gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 232
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92
Query: 82 ASSYIGKNI 90
A++ IG +
Sbjct: 93 ATTLIGHGV 101
>gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi
ATCC BAA-1116]
gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116]
Length = 228
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86
>gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi
HY01]
gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi
HY01]
Length = 228
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86
>gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
Length = 230
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82
>gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
1873]
gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
1873]
Length = 272
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A
Sbjct: 62 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM-------SFNSA 114
Query: 83 SSYIGKNI 90
S+ +GK +
Sbjct: 115 SNMVGKTV 122
>gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD
[Pseudoalteromonas haloplanktis ANT/505]
gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD
[Pseudoalteromonas haloplanktis ANT/505]
Length = 226
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ + L Q+ F LL Q+ +QDP+ P + +AQ+ F+ + +N+
Sbjct: 20 QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79
Query: 71 QEL---LKSNNLAQASSYIGK 88
+ L + SN+ QAS+ +GK
Sbjct: 80 ESLASSMTSNSALQASTLVGK 100
>gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 232
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQM 60
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E Q+AQ++ S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
E+ M + + ++ QA++ IG +
Sbjct: 72 EKLNTMLGAISGQIDNSQSLQATTLIGHGV 101
>gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44]
gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44]
Length = 220
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP PM +E +Q+A + + Q+N T+ + + + Q
Sbjct: 30 QDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTGIQQLNQTMASMSSQFTAMQVLQ 89
Query: 82 ASSYIGKNI 90
+S IG+ +
Sbjct: 90 GTSMIGRTV 98
>gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter
pylori SJM180]
gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter
pylori SJM180]
Length = 346
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter
pylori F30]
Length = 329
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51]
Length = 334
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 223
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M + Q LL + +
Sbjct: 35 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMTTMTQNSMVLLDNLQVLS 94
Query: 82 ASSYIGKNI 90
++ +GK +
Sbjct: 95 TANLVGKTV 103
>gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
Length = 230
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82
>gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
30120]
gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
30120]
Length = 288
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+D FLK+++TQ+++QDPT+PM ++ Q+AQ+A M + + + + + S Q
Sbjct: 35 RDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLESMNKLSDSVTGISQQIGSGQSLQ 94
Query: 82 ASSYIGKNI 90
A+ +GK +
Sbjct: 95 ATQLVGKGV 103
>gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter
pylori F32]
Length = 329
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum
S14]
gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum
S14]
Length = 225
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q
Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83
>gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 225
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q
Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83
>gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1]
gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1]
Length = 293
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
+++G + FL+L++ Q+++QDPT+P + + Q+A F+ Q+ S +E ++S+
Sbjct: 95 QSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFREFFEHMRSD 154
Query: 78 NLAQASSYIGKNI 90
+AS +G+ +
Sbjct: 155 QSLRASQLVGREV 167
>gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
Length = 230
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82
>gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
Length = 226
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q
Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQ 83
>gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus
taiwanensis LMG 19424]
gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus
taiwanensis LMG 19424]
Length = 221
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S S S L Q+ FL +L+TQ+ +QDP PM ++ +QLA S + MN+TL +LL
Sbjct: 20 SGSASASEL-QNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLL 78
Query: 75 KSNNLAQA---SSYIGKNI 90
+ ++A ++ IG+ +
Sbjct: 79 GQVSASRAMDSAALIGRTV 97
>gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio
brasiliensis LMG 20546]
gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio
brasiliensis LMG 20546]
Length = 226
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M++ +Q
Sbjct: 38 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSTMMQ 84
>gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter
pylori J99]
gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
Length = 228
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 80
>gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica
KT99]
gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica
KT99]
Length = 268
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
S + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L ++
Sbjct: 65 SSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDEIINLNAVMT 124
Query: 76 SNNLAQASSYIGKNI 90
S+ QAS +G+ +
Sbjct: 125 SSQALQASGLVGQKV 139
>gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
Length = 237
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQA 82
++F+ LL+ Q+++QDPT PM ++ +QLA FS Q+NST+ L+ S A
Sbjct: 29 NSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASGVQQLNSTVMAVGSLVTSMQQMNA 88
Query: 83 SSYIGKNI 90
+ ++G+ +
Sbjct: 89 ADWVGRQV 96
>gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum
magnetotacticum MS-1]
Length = 223
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L K++ + AS
Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAASSASG 91
Query: 85 YIGKNITNADGS 96
IG+ + ADG+
Sbjct: 92 LIGRTVV-ADGA 102
>gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter
pylori 52]
Length = 354
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ +KSN
Sbjct: 28 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSN 85
>gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
Length = 230
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
Q+ FL LL TQ+K QDP PM+ +E +Q+A SQ+ ++ ++ LL+S Q
Sbjct: 34 QNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLENLSKSINSLLQSQYGTQSLL 93
Query: 82 ASSYIGK 88
A+S +GK
Sbjct: 94 AASLVGK 100
>gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella
oneidensis MR-1]
gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis
MR-1]
Length = 253
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 41 PSNSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 99
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
L ++ S+ QAS +G+ + + I S GL + + +IP+
Sbjct: 100 QIVNLNSVMTSSQALQASGLVGRKVL-----LPTDTGYISAESPGLNGVISTSEKIPVIN 154
Query: 126 GIRISN 131
IRI +
Sbjct: 155 -IRIED 159
>gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
Length = 230
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSI 82
>gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 97
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTL 70
++N+TL
Sbjct: 72 EKLNTTL 78
>gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b]
gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b]
Length = 224
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80
Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL ++ S NL
Sbjct: 32 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQNL- 90
Query: 81 QASSYIGKNITNADGS 96
Q+++ IG + DGS
Sbjct: 91 QSTTLIGHGVM-VDGS 105
>gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 225
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q
Sbjct: 37 QNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 83
>gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
Length = 273
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Q T+
Sbjct: 17 KEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEQNKKTMV 76
Query: 72 EL 73
E+
Sbjct: 77 EV 78
>gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
Length = 117
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + +L + FL+L+ Q+ +QDP EP + +AQLA FS +E +TL E+
Sbjct: 27 RESAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRATLDEI 84
>gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD
gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 226
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL----QELLKSNNLA 80
Q FL LL+ Q+K+QDPT+P+K SE +QLA + ++NST+ ++ +S N+
Sbjct: 32 QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNI- 90
Query: 81 QASSYIGKNI 90
Q SS IG ++
Sbjct: 91 QVSSLIGHHV 100
>gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
Length = 224
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDA---FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA +
Sbjct: 7 VNEKLDPTVLSSSSTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66
Query: 60 MEQSVQMNSTLQEL 73
+ ++N+TL +
Sbjct: 67 LSGIEKLNTTLGSI 80
>gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC
33641]
gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC
33641]
Length = 230
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL +
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAI 82
>gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum
BKT015925]
gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum
BKT015925]
Length = 275
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+ + A
Sbjct: 65 MDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQMANLNSTM-------SFNSA 117
Query: 83 SSYIGKNI 90
S +GK +
Sbjct: 118 GSMVGKTL 125
>gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
Length = 156
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+++ + Q+++++ S L + FLKL++ Q+K QDPT+P + + Q S ++
Sbjct: 5 EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107
++ M+++++ L + ++L+ A++ I K + + +G++ + VS
Sbjct: 65 TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKSYAVS 113
>gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus
nematophila ATCC 19061]
gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
nematophila ATCC 19061]
Length = 233
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+D FL LL+ Q+K+QDPT PM+ +E Q+A S ++ ++N TL ++ + QA
Sbjct: 34 KDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGVEKLNKTLGSIVGQMDHNQA 91
>gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio
mimicus VM603]
gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio
mimicus VM603]
Length = 227
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q
Sbjct: 42 QNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSMENMSGLMQ 88
>gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella
putrefaciens CN-32]
gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200]
Length = 253
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 100 EIVNLNSVMTSSQALQASGLVGRKV 124
>gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
17241]
gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
17241]
Length = 249
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL L++ Q+++QD P+ ++ V QLA F+ M Q +QEL + A S
Sbjct: 53 DDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQ-------MQELAANMKNNYALSL 105
Query: 86 IGKNITNADGSISGVV 101
+G N+T A ++SG +
Sbjct: 106 VGTNVTAAKFAVSGAL 121
>gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha
H16]
gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha
H16]
Length = 221
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S S S L Q+ FL +L+TQ+ +QDP PM ++ +QLA S + MN+TL +LL
Sbjct: 20 SGSASASEL-QNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLL 78
>gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter
hepaticus ATCC 51449]
gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC
51449]
Length = 273
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 6 EVNPTQQEFSKSKSK----KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
EV + + +K K K L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQEL 73
Q T+ E+
Sbjct: 67 MQEQNKKTMVEV 78
>gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
Length = 222
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
Q+ FL +L+TQ+ +QDP P+ S+ +QLA S + MN+T+ +LL+ ++A
Sbjct: 30 QNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGLQTMNTTMTQLLQQTAASRAMD 89
Query: 83 -SSYIGKNI 90
++ IGK +
Sbjct: 90 SANLIGKTV 98
>gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
51599]
gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
51599]
Length = 256
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
NP + +S + T +D FLKLL+ Q+++QDP PM+ +E +QLA S + +
Sbjct: 46 ANPNVNKNDESTADGT--EDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRGIESL 103
Query: 67 NSTLQELLKS--NNLAQAS-SYIGKNI 90
N ++ S N A AS + IGK +
Sbjct: 104 NKSMANFTASAAQNTALASVNMIGKKV 130
>gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
Length = 222
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ FL L++ QI++QDP P+ +E V QLA FSQ+E
Sbjct: 31 KNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVE 67
>gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis
glossinidius str. 'morsitans']
gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis
glossinidius str. 'morsitans']
Length = 138
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
Q+ FL LL+ Q+++QDPT P+ +E Q+AQ+++ S +E +N+ L + S NL Q
Sbjct: 32 QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIE---NLNTMLGS-ISSQNL-Q 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
A++ +G + DGS A+ S G ++ D
Sbjct: 87 ATTLVGHGVM-VDGS-----GAVYYSRNGEFSLNAD 116
>gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis]
Length = 182
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N
Sbjct: 14 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 71
Query: 69 TLQELLKSNNLAQA 82
T+ ++ + +QA
Sbjct: 72 TVNTIVGQIDQSQA 85
>gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
Length = 220
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
S S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N T++ +
Sbjct: 21 SNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNKTMESMA 80
Query: 74 --LKSNNLAQASSYIGKNI 90
+ + Q + IG+ +
Sbjct: 81 GQFTAMQVLQGTQMIGRTV 99
>gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
Length = 274
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST+
Sbjct: 59 KKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNSTM 111
>gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis
ATCC 29906]
gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis
ATCC 29906]
Length = 268
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N
Sbjct: 20 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 77
Query: 69 TLQELLKSNNLAQA 82
T+ ++ + +QA
Sbjct: 78 TVNTIVGQIDQSQA 91
>gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas
ingrahamii 37]
gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas
ingrahamii 37]
Length = 230
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
F+ L++ QI++QDP P +E V+QLA FSQ+E + M S +Q
Sbjct: 39 FITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAENMVSLMQR 83
>gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
Length = 162
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
FL LL+ ++++QDPT PM ++ V Q+ +Q++Q + +N TL
Sbjct: 54 FLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQTL 96
>gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii
DSM 4541]
gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii
DSM 4541]
Length = 285
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+D FL +++TQ+++QDPT+PM ++ Q+AQ+A M + S + + + S Q
Sbjct: 35 RDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLESMNKLSDSVSGISQQIGSGQSLQ 94
Query: 82 ASSYIGKNI 90
A+ +GK +
Sbjct: 95 ATQLVGKGV 103
>gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
Length = 222
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLK 75
F+ L++ QI++QDP P +E VAQLA FSQ+E Q Q NST+ + L+
Sbjct: 35 FITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVESTENLVQLTQNNSTMLDNLQ 88
>gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
Length = 229
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQASS 84
FL +L TQ+K+Q+P P +E QL +SQ+EQ + N L+ L+ S N A +
Sbjct: 34 FLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGNQYLENLVLSTNNQTAETALA 93
Query: 85 YIGKNI 90
++GK +
Sbjct: 94 FVGKEV 99
>gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter
pylori HPKX_438_CA4C1]
Length = 95
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+
Sbjct: 9 LDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEV 59
>gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 232
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
F+KLL+ Q+++QDPT PM ++ +QLA F+ ++N++ +Q L+ A+S
Sbjct: 29 FMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNTAAGVEKLNASVGNVQALMAQLGSMSAAS 88
Query: 85 YIGKNI 90
++G+ +
Sbjct: 89 WVGRGV 94
>gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio
mimicus VM573]
gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio
mimicus MB-451]
gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio
mimicus VM573]
gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio
mimicus MB-451]
Length = 227
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q
Sbjct: 42 QNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIENMSGLMQ 88
>gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
Length = 94
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++T NPT + S T+ D F+ LL+ ++++QDPT P ++ + QL + ++Q
Sbjct: 19 MDTSTNPT-----TATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQ 73
Query: 63 SVQMNSTLQELLKS 76
+ +N+ + EL S
Sbjct: 74 LIGINTGIGELTSS 87
>gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter
litoralis KT71]
gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter
litoralis KT71]
Length = 232
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
FL L++ ++++QDPT P S+ + QLA F + ++N++ L L QA+S
Sbjct: 33 FLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNASFGGLSSALTGGQALQAAS 92
Query: 85 YIGKNI-TNAD-GSISGVVNA 103
+G+++ T+++ G ++G NA
Sbjct: 93 LVGRSVMTDSNLGQLTGAANA 113
>gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
BAA-613]
gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
BAA-613]
Length = 233
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
F KK + D FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+
Sbjct: 86 FGDGDDKK-VSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEM 137
Query: 74 LKSNNLAQASSYIGKNITNADGSISG 99
+ + +S +GKN++ A ++SG
Sbjct: 138 AYNAKSSYVASLVGKNVSAAKFTVSG 163
>gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica
OS223]
gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223]
Length = 256
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127
>gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320]
gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320]
Length = 264
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P+ K S G FL LLITQ+++QDPT PM+ +E +QLA S +E +N
Sbjct: 20 PSSYHTKKGGSDDIKGN--FLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGIETLNK 77
Query: 69 TLQELLKSNNLAQA 82
T+ ++ + +QA
Sbjct: 78 TVNTIVGQIDQSQA 91
>gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica
OS185]
gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica
OS195]
gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185]
gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195]
gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678]
Length = 256
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 103 QIVNLNSVMTSSQALQASGLVGRKV 127
>gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T]
gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T]
Length = 224
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84
FL LL TQ+K+QDP PM+ +E +QLA S ++ ++N Q + + + QA++
Sbjct: 36 FLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTVDGIERLNKMFQSFVDGQSAYDSMQAAA 95
Query: 85 YIGKNI 90
+G+ +
Sbjct: 96 LVGRGV 101
>gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
Length = 101
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
+K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ + L + S
Sbjct: 33 QKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMTS 92
Query: 77 NNLAQASS 84
N QASS
Sbjct: 93 NQALQASS 100
>gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 221
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME------QSVQMNSTLQELLK 75
F+ L++ QI++QDP P +E VAQLA FSQ+E Q +Q N+T+ + L+
Sbjct: 35 FITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVESTENLVQLMQNNTTMLDNLQ 88
>gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 216
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71
S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N ++Q
Sbjct: 18 SNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNLSMQTMA 77
Query: 72 ELLKSNNLAQASSYIGKNI 90
E + Q + IG+N+
Sbjct: 78 EQFTTMQTLQGTMMIGRNV 96
>gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica
OS155]
gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155]
Length = 256
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P ++KS++ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 44 PKDSIVPEAKSQQ-LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLND 102
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127
>gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis
PB1/+]
Length = 218
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A
Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83
>gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175]
gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175]
Length = 256
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L ++ S+
Sbjct: 57 LTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNSVMTSSQA 116
Query: 80 AQASSYIGKNI 90
QAS +G+ +
Sbjct: 117 LQASGLVGRKV 127
>gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98]
Length = 174
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELL 74
K+ +G+D FLKL +T +++QDP M + + Q++ S MEQ M + L++ +
Sbjct: 35 KTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMTKAVNALKDTV 94
Query: 75 KSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ L ++GK I + DG+ ISG V+A+++++ N EI + G +I
Sbjct: 95 NTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAA---------NNEIQLVVGDKI 143
>gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis YPIII]
gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis
YPIII]
Length = 218
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A
Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83
>gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
Length = 228
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M +Q
Sbjct: 40 ENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMAMLMQ 86
>gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
Length = 100
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
F + + +GQ FL+L+ Q+ QDP P+ +E VAQ+A FS + + N+ L ++
Sbjct: 13 FHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSLAGISETNTVLAQI 72
>gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 31758]
gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 31758]
Length = 218
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A
Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83
>gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis
KIM 10]
gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis
biovar Microtus str. 91001]
gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis
Antiqua]
gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis
Nepal516]
gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis
Pestoides F]
gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis
CA88-4125]
gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis
Angola]
gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1]
gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis
CO92]
gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis Pestoides A]
gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis biovar Orientalis str. India 195]
gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis Nepal516]
gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis
Z176003]
gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10]
gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Microtus str. 91001]
gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516]
gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis
Antiqua]
gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis
CO92]
gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F]
gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis
CA88-4125]
gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis Nepal516]
gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis biovar Orientalis str. India 195]
gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia
pestis Pestoides A]
gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis
D106004]
gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis
D182038]
gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis
Z176003]
gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia
pestis biovar Medievalis str. Harbin 35]
Length = 218
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
F+ LL+ QIK+QDP P +E V+Q+A SQ VQ + +LLKSN + A
Sbjct: 33 FMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQ----VQATENMAKLLKSNTVQMA 83
>gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703]
Length = 219
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
F+ LL+ QI++QDP PM +E V Q+A SQ VQ + ++LKSN
Sbjct: 34 FMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQ----VQSTENMAKMLKSN 79
>gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp.
W3-18-1]
gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
Length = 253
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QA+ +G+ +
Sbjct: 100 EIVNLNSVMTSSQALQATGLVGRKV 124
>gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina
loihiensis L2TR]
gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR]
Length = 227
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
++ + L Q+ F +LL Q+ QDP++P++ + +AQ+ F+ E ++ +
Sbjct: 23 YADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQF 82
Query: 74 ---LKSNNLAQASSYIGKNI 90
+ SN QAS+ +G+ +
Sbjct: 83 ASDMTSNQALQASTMVGRKV 102
>gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
Length = 192
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + S L D F KLL Q+++QD + PM SE + Q+ + M+ ++ +++
Sbjct: 17 LTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMNNFSTAMEDF 76
Query: 74 LKSNNLAQASSYIGKN--ITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ N + +S +GK I AD + I+G V + + S G+ I +++ + TG
Sbjct: 77 SQINTINYGTSMMGKEVMIAAADKTGQIKKINGTVTRVDIFS-GIPTIYINDDD---KTG 132
Query: 127 IRISN 131
I+N
Sbjct: 133 YSIAN 137
>gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31]
gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31]
Length = 232
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M + N + + S++ + FLKLL TQ+K+QDP P S+ +Q+ + +
Sbjct: 1 MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60
Query: 61 EQSVQMNSTLQELLK---SNNLAQASSYIGKNIT 91
EQ + N L L+ +++ + +GK +T
Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVT 94
>gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 279
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 9/69 (13%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQA 82
D FLK+++ QIK+QDPT P+ + Q+ +QM ++ ++N ++QE+ ++ N +Q
Sbjct: 84 DNFLKMILVQIKNQDPTHPIDNNHLTTQM---TQMHTALGIEKLNKSIQEIKQTMNNSQY 140
Query: 83 ---SSYIGK 88
S++IGK
Sbjct: 141 INLSNWIGK 149
>gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata
DSM 2581]
gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata
DSM 2581]
Length = 230
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
F+ LL+TQ+++QDP PM + +QLA + + ++N +L E+ + + QAS
Sbjct: 33 FMTLLVTQLQNQDPLNPMDNHQTTSQLAQINTVSGIEKLNDSLSEINGQIDAGQSLQASG 92
Query: 85 YIGKNI 90
IGK +
Sbjct: 93 LIGKGV 98
>gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM
5305]
gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM
5305]
Length = 160
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
I T +PT Q T L +AFLKL+I Q+++QDPTEP E + Q++
Sbjct: 4 IETVYSPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMR 63
Query: 59 QMEQSVQMNSTLQELLKS 76
++ S+++ + L S
Sbjct: 64 SLQSSIELEDMIASLANS 81
>gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1]
Length = 225
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNSTLQELLKSN 77
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+ +L SN
Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT--NAVLMSN 78
>gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia
coli NC101]
gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia
coli NC101]
Length = 237
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli
BSR3]
gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli
BSR3]
Length = 259
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASE---QVAQLAVFS 58
T VN T + + S T D FL LL+TQ+++QDPT P+ +S+ Q+AQ+ S
Sbjct: 12 TTVNNTPTDTMNANSSNTSAADLQQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVS 71
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+ Q ++L + + QA+ +G N+
Sbjct: 72 GIAQLNSSLTSLSSQITAGQQTQAAMLVGSNV 103
>gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v]
Length = 237
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509]
Length = 237
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella
amazonensis SB2B]
gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B]
Length = 242
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKS 76
K+ L Q+ F LL Q+ QDP +P++ + +AQ+A FS ++ +N L ++ S
Sbjct: 40 KQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDHIVNLNTVMTS 99
Query: 77 NNLAQASSYIGKN--ITNADGSIS 98
+ QAS +G+ I +A G +S
Sbjct: 100 SQALQASGLVGQKVLIPSASGHVS 123
>gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1]
Length = 237
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026]
gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412]
gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli FVEC1302]
gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli
UMN026]
gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412]
gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli FVEC1302]
Length = 237
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605]
gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605]
Length = 237
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia
coli O26:H11 str. 11368]
gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia
coli O111:H- str. 11128]
gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia
coli O26:H11 str. 11368]
gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia
coli O111:H- str. 11128]
gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14]
gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180]
Length = 237
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
Length = 237
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431]
Length = 244
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia
coli H736]
gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736]
gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736]
Length = 237
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280]
gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280]
Length = 237
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W]
gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W]
gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W]
gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11]
Length = 237
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
Length = 220
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T++ + + + Q
Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMADQFSALQVLQ 91
Query: 82 ASSYIGK-------NITNADGSISGVVN 102
+S IG+ N+ ADG G+ +
Sbjct: 92 GASMIGRSVVTEGNNLPVADGVGKGMFD 119
>gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357]
Length = 237
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
33638]
gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
33638]
Length = 219
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
F+ LL+ QI++QDP PM +E V+Q+A SQ VQ + ++LKSN
Sbjct: 34 FMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQ----VQSTENMAKMLKSN 79
>gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354]
Length = 234
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 34 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80
>gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1]
Length = 246
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 46 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 92
>gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9]
gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9]
gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9]
Length = 237
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
Length = 71
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+LGQ FL+LL Q++ QDP P+ E ++Q+A FS + + N++L+ +
Sbjct: 3 SLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERI 54
>gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 234
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQASS 84
F+ LL+ Q+K+QDPT PM ++ +QLA F+ ++NS+ +Q ++ AS+
Sbjct: 28 FMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMAAGVEKLNSSVAGVQAMMIQLGSMSASA 87
Query: 85 YIGKNI 90
++G+++
Sbjct: 88 WVGRSV 93
>gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
Length = 233
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N L ++ K+ + A+
Sbjct: 33 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQLKTNDRLDTMVAASKAATASSAAG 92
Query: 85 YIGKNITNADGSISGVVNA 103
+GK +T ADG+ + +
Sbjct: 93 LVGKTVT-ADGATAALAGG 110
>gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
Length = 236
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T+Q + + + Q
Sbjct: 48 QDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTMQRMAAQFDALQVMQ 107
Query: 82 ASSYIGKNI 90
++ +G+++
Sbjct: 108 GAALVGRSV 116
>gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas
stutzeri DSM 4166]
Length = 221
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S T ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++ M S L NN
Sbjct: 27 SDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTS-----LAQNN 81
Query: 79 L 79
L
Sbjct: 82 L 82
>gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
Length = 218
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL------AQ 81
F+ LL+ QI++QDP P +E V+Q+A SQ VQ + +LLKSN + A
Sbjct: 33 FMTLLVAQIQNQDPLNPTDGTEFVSQMAQLSQ----VQSTENMAKLLKSNTVQMEKMQAM 88
Query: 82 ASS-YIGKNITNADGSI 97
A++ +G+N+ G+I
Sbjct: 89 ATANLVGQNVMVESGTI 105
>gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4]
gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4]
Length = 256
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 44 PGNSVVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 102
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 103 EIVNLNSVMTSSQALQASGLVGRKV 127
>gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter
cancerogenus ATCC 35316]
gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter
cancerogenus ATCC 35316]
Length = 234
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---------LKSNN 78
F+KLL+ QI++QDP P +E V QLA +Q++ M +Q + L + N
Sbjct: 35 FMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSMENMTVGMQNIGVLMDNLQTLSTGN 94
Query: 79 LAQASSYIGKNITNADGSIS 98
L + + DGS S
Sbjct: 95 LVGQKVMVQTDTLQTDGSTS 114
>gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
Length = 226
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-NNLAQ 81
L Q FL LL TQ+++QDPT P + + Q+ ++ +++ V N L+ ++ + LA
Sbjct: 30 LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89
Query: 82 ASS--YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S+ IG+ + GS S V T +T+D + GI I +
Sbjct: 90 LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134
>gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila]
Length = 231
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE----LLKSNNLAQAS 83
FL++++ QI++QDPT P+ ++ V QLA FS +E V+ LQ+ ++ + + Q++
Sbjct: 45 FLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVE-GVESLKVLQQKSINMMDTQQVLQST 103
Query: 84 SYIGKNI 90
+ I K +
Sbjct: 104 ALIDKEV 110
>gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium
violaceum ATCC 12472]
gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium
violaceum ATCC 12472]
Length = 225
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
G D F+ LL+ QI++Q P +P S+ V+QLA SQM+ + M LQ
Sbjct: 35 GNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQSTQDMLKQLQ 82
>gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella
frigidimarina NCIMB 400]
gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400]
Length = 261
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P + +SK + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N
Sbjct: 49 PEESAIPESK-DQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLND 107
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 108 EILNLNTVMSSSQALQASGLVGRKV 132
>gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103]
gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103]
gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis
AJ13355]
Length = 223
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL
Sbjct: 31 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTL 76
>gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105]
gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105]
Length = 223
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ F+ LL+ Q+K+QDP PM ++ +Q+A + + +N+T++ + + +N Q
Sbjct: 31 QERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQLNTVTGINTLNATMEGVAASINANQTVQ 90
Query: 82 ASSYIGKNI 90
A+S +G+ +
Sbjct: 91 ATSMLGRAV 99
>gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 191
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
+L+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ QASS IG
Sbjct: 1 MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60
Query: 88 KNI 90
+ +
Sbjct: 61 RGV 63
>gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium
SS3/4]
Length = 189
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 3 INTEVNPTQQEF--SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ NP Q + S SK T+ ++F+KLL Q+ +QD T PM SE ++Q+ + +
Sbjct: 7 VSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMAMV 66
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93
+ M +L A S IG+ +T A
Sbjct: 67 QSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVA 99
>gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS
2060]
gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS
2060]
Length = 228
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
FL LL TQ+++Q+P +P+ ++ QL F+ +EQ ++ N L LL
Sbjct: 35 FLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQLKTNDRLDSLL 81
>gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD
[Acidithiobacillus caldus ATCC 51756]
gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD
[Acidithiobacillus caldus ATCC 51756]
Length = 231
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASS 84
F LL+TQ+ +QDP P+ + AQLA FS + S+L L+ N QA+S
Sbjct: 41 FYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAAS 100
Query: 85 YIGKNIT 91
IGK++T
Sbjct: 101 LIGKSVT 107
>gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
Length = 213
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
INT PT+ SK+ + D FLKLL+ Q+++QDP PM ++ +Q+A + +
Sbjct: 10 INT---PTE---SKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNIT 91
++N T+ L Q +S IG+++T
Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVT 95
>gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12]
gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12]
Length = 232
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS------QMEQSVQMNSTLQELLKSNNL 79
+ F LL+TQ+ +QDP PM ++ AQLA FS M+QS+ +TL L
Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSM---ATLTAQLAQTQG 94
Query: 80 AQASSYIGKNITNADGSIS 98
QA++ +G+ + + SIS
Sbjct: 95 LQAANLVGQTVVFDNNSIS 113
>gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica
PV-4]
gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4]
Length = 260
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 11 QQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
Q+E S ++K + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 48 QEESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITKLNEE 107
Query: 69 --TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 108 IVNLNTVMTSSQALQASGLVGQKV 131
>gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus
(Silurana) tropicalis]
Length = 222
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81
QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N ++Q E + Q
Sbjct: 32 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNLSMQNMSEQFAAMQTLQ 91
Query: 82 ASSYIGKNI 90
+ IG+++
Sbjct: 92 GTMMIGRSV 100
>gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
Length = 241
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
F +LL+ Q+K+QDP PM+A++ V Q A SQ+E
Sbjct: 33 FTRLLVAQVKNQDPLAPMEANQFVTQFAQMSQVE 66
>gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea
DSS12]
gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea
DSS12]
Length = 235
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
P ++ ++ S+ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N
Sbjct: 23 PEEKSIPEANSQG-LSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLND 81
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L ++ S+ QAS +G+ +
Sbjct: 82 EIINLNTVMTSSQALQASGLVGQKV 106
>gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
34H]
gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
34H]
Length = 256
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
S+ L Q F LL ++ +QDPT+P+ ++ ++Q+ FS + +N + +
Sbjct: 52 SEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAGSMT 111
Query: 76 SNNLAQASSYIGKNI 90
S+ QASS +G+++
Sbjct: 112 SSQALQASSLVGRSV 126
>gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
Length = 242
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FLKLL TQ+K+QDP P ++ Q+ + +EQ + N L L+ N L + S
Sbjct: 31 FLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALVGMNTGTGLTEGVS 90
Query: 85 YIGKNIT 91
IGK +T
Sbjct: 91 MIGKQVT 97
>gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
Length = 216
Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ--- 71
S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N ++Q
Sbjct: 18 SNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNLSMQTMA 77
Query: 72 ELLKSNNLAQASSYIGKNI 90
E + Q + IG+++
Sbjct: 78 EQFSTMQTLQGTMMIGRSV 96
>gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella
nitroferrum 2002]
gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella
nitroferrum 2002]
Length = 226
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
D F+ LL+ QIK+Q+P +P S+ V QL +QM+ S+ M S L++
Sbjct: 33 DMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQMQTSLGMLSQLKD 79
>gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter
vinelandii DJ]
gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ]
Length = 222
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASS 84
F+ LLI Q+++QDP +PM+ +E +QLA + + ++N+TL+ + + QA++
Sbjct: 32 FMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNGIEELNATLEGITGQIDETQALQAAA 91
Query: 85 YIGKNI 90
+G +
Sbjct: 92 LVGHGV 97
>gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella
longbeachae D-4968]
gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella
longbeachae NSW150]
gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella
longbeachae D-4968]
gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella
longbeachae NSW150]
Length = 224
Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
KK + FL ++ QI++QD + E ++QLA F+ + + M +LQ++ L+S
Sbjct: 24 KKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTSLQS 83
Query: 77 NNLAQASSYIGKNI 90
N QAS+ +G+ +
Sbjct: 84 NQALQASALVGRKV 97
>gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
Length = 217
Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
G + FLKLL+TQ+K+QDP PM ++ +Q+A
Sbjct: 28 GSERFLKLLVTQMKNQDPMNPMDNAQVTSQIA 59
>gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638]
gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638]
Length = 237
Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++Q+PT+P A+E + QL+ +Q+ E SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANT 83
>gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp.
3As]
Length = 232
Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS------QMEQSVQMNSTLQELLKSNNL 79
+ F LL+TQ+ +QDP PM ++ AQLA FS M+QS+ +TL L
Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSM---ATLTAQLAQTQG 94
Query: 80 AQASSYIGKNITNADGSIS 98
QA++ +G+ + + S+S
Sbjct: 95 LQAANLVGQTVVFDNNSLS 113
>gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
Length = 220
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
F LLI QI++QDP PM AS+ V Q A SQ+E
Sbjct: 36 FTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQVE 69
>gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
Length = 205
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ +
Sbjct: 63 SDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNAK 115
Query: 79 LAQASSYIGKNITNADGSISG 99
+S +GK +T A +++G
Sbjct: 116 STYVTSLVGKTVTAAKFTVAG 136
>gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
Length = 59
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q
Sbjct: 1 LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQ 41
>gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 90
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKAS---EQVAQLAVFSQME 61
+T+G + F+ LL+ Q+++QDPT PM + +Q QLA+ M+
Sbjct: 27 QTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRSMQ 70
>gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
Length = 220
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q
Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91
Query: 82 ASSYIGKNITN-------ADGS------ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
S IG+++ + ADG+ ++G ++V + VD+ ++ G R
Sbjct: 92 GISLIGRSVLSEGDRMSFADGTGKGMFDLAGAATNVKVDIVTAGGVVVDSIDMGAQEGGR 151
Query: 129 IS 130
S
Sbjct: 152 HS 153
>gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
Length = 234
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
F+ L++ Q+++QDP P ++ V QLA F+Q++ + M S L
Sbjct: 37 FITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTDNMVSIL 79
>gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi
ATCC 51908]
gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908]
Length = 270
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L ++ S+
Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDEIVNLNTVMTSSQA 130
Query: 80 AQASSYIGKNI 90
QAS +G+ +
Sbjct: 131 LQASGLVGQKV 141
>gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella
denitrificans OS217]
gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 263
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++K ++L Q F LL Q+ QDP +P+ + + Q+A FS ++ ++N
Sbjct: 51 PTESAIPEAK-DQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNE 109
Query: 69 ---TLQELLKSNNLAQASSYIGKNI 90
L + S+ QAS +G+ +
Sbjct: 110 EILNLTSVTSSSQALQASGLVGRKV 134
>gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri
ATCC BAA-895]
gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895]
Length = 227
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
F++LL+ QI++QDP P +E V+QLA +Q++
Sbjct: 35 FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQ 68
>gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
Length = 295
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
D FL L + +I++QDPT+P + + QL+ +Q+ E SVQ N+
Sbjct: 70 DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANT 116
>gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 164
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
F+ L++ Q+++QDP P ++ V QLA F+Q++ + M S L
Sbjct: 37 FITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTDNMVSIL 79
>gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
Length = 270
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM----EQSVQMNS 68
G + FL L + +I++QDPT+P ++ + QL+ +Q+ E SVQ N+
Sbjct: 63 GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANT 111
>gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis EO147]
gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis C6786]
Length = 223
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D F KLL QI++Q+P EPM +S+ V QL + M+Q+ M + +L + NLA SS
Sbjct: 35 DLFAKLLDAQIRNQNPLEPMDSSQFVTQLMM---MQQTQAMETV--AVLTNQNLATTSSM 89
Query: 86 I 86
+
Sbjct: 90 L 90
>gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10]
gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10]
Length = 221
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
FL LL Q+K+QDP P+ +++ V QL FS +EQ +
Sbjct: 29 FLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSVEQQI 65
>gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 113
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
F+ L++T++ HQDP +PM+ +E Q++ F+ + +N + L S +L ++ G
Sbjct: 33 FMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFTGLSSSMHLRSGAT--G 90
Query: 88 KNITNADGS 96
+ A G+
Sbjct: 91 RQFVGAPGA 99
>gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis
HAW-EB3]
gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
Length = 282
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
L Q+ F LL Q+ QDP +P+ + ++Q+A FS ++ +N L ++ S+
Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDEIVNLNSVMTSSQA 130
Query: 80 AQASSYIGKN---------ITNADGSISGVVN 102
QAS +G+ I+ D SI+G+++
Sbjct: 131 LQASGLVGQKVLIPSDTGYISAEDPSINGIIS 162
>gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora
CFBP1430]
gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC
49946]
gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC
49946]
gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora
CFBP1430]
gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
BAA-2158]
Length = 226
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 6 VNNTRGPGQVDMGSSAADLS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTASG 62
Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90
++N ++ +L A+S++G+ +
Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93
>gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
Length = 216
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q
Sbjct: 28 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTMAEEFSTMQQIQ 87
Query: 82 ASSYIGKNI 90
S IG+++
Sbjct: 88 GISLIGRSV 96
>gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42]
gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42]
Length = 216
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q E + Q
Sbjct: 28 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTMAEEFSTMQQIQ 87
Query: 82 ASSYIGKNI 90
S IG+++
Sbjct: 88 GISLIGRSV 96
>gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp.
Ejp617]
Length = 226
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 6 VNNTRGPGQVDMGSSAADIS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAG 62
Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90
++N ++ +L A+S++G+ +
Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93
>gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
pyrifoliae Ep1/96]
gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
pyrifoliae Ep1/96]
gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
12163]
Length = 226
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N P Q + S + + +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 6 VNNTRGPGQVDMGSSAADIS---GSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAG 62
Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNI 90
++N ++ +L A+S++G+ +
Sbjct: 63 VEKLNDSVAIVGGMLVQMQEMGATSWVGREV 93
>gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella
halifaxensis HAW-EB4]
gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
Length = 267
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79
L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N L L S+
Sbjct: 68 LSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEIGNLNALTSSSQA 127
Query: 80 AQASSYIGK---------NITNADGSISGVVN 102
QAS +G+ +I+ D S+ G+++
Sbjct: 128 LQASGLVGQKVLIPSDTAHISAEDPSMKGIIS 159
>gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis
glossinidius str. 'morsitans']
gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis
glossinidius str. 'morsitans']
Length = 269
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQA 82
D FL++++ QIK+QDPT PM ++ +Q+A QM ++ ++N+T+ + N QA
Sbjct: 72 DNFLQMMLAQIKNQDPTNPMDNNQLASQMA---QMHVALGVEKLNNTVLGMGNMVNSVQA 128
Query: 83 ---SSYIGKNI 90
S+++G+ +
Sbjct: 129 VNLSNWVGRTV 139
>gi|305663892|ref|YP_003860180.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
gi|304378461|gb|ADM28300.1| AAA ATPase central domain protein [Ignisphaera aggregans DSM 17230]
Length = 480
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 41 PTEP-MKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISG 99
P +P ++ ++A++ F ++ +S M L ++ ++ NL I I A+G +
Sbjct: 145 PYDPSLRVLREIAEMVQFKKLSKS-DMRMVLNKICRAENLRCDEEAIDYIIERAEGDLRA 203
Query: 100 VVNAIQVSSTGLTAITVDNTEI 121
+N +Q G +T+D +I
Sbjct: 204 AINDLQAVGEGFGEVTLDRAKI 225
>gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68]
Length = 234
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-SVQMNS 68
DAFL L + +I++QDPT+ + +Q++ +A + ME+ SVQ N+
Sbjct: 37 DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80
>gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana
ATCC 700345]
gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
Length = 270
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
L Q+ F LL Q+ QDP +P++ + + Q+A FS ++ ++N L L S+
Sbjct: 71 LTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQA 130
Query: 80 AQASSYIGK---------NITNADGSISGVVN 102
QAS +G+ +I+ D S+ G+++
Sbjct: 131 LQASGLVGQKVLIPSDTAHISAEDPSMKGIIS 162
>gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas
mendocina ymp]
gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
Length = 225
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S L KSN
Sbjct: 36 FLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMAS----LSKSN 81
>gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
Length = 225
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S L KSN
Sbjct: 36 FLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMAS----LSKSN 81
>gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella
piezotolerans WP3]
gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
Length = 267
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N L L S+
Sbjct: 68 LSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEIVNLNALTTSSQA 127
Query: 80 AQASSYIGKNI 90
QAS +G+ +
Sbjct: 128 LQASGLVGQKV 138
>gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia
thailandensis Bt4]
gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
Length = 241
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
D F KLL QI++Q+P EPM AS+ V Q+ + Q E
Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79
>gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia
thailandensis TXDOH]
Length = 241
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
D F KLL QI++Q+P EPM AS+ V Q+ + Q E
Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79
>gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia
thailandensis E264]
Length = 231
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
D F KLL QI++Q+P EPM AS+ V Q+ + Q E
Sbjct: 34 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 69
>gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + + ++AFL +L ++ + DP +++ V Q+A F+ MEQ +N+T+
Sbjct: 22 KPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASMEQMTNLNTTMSSYAH-- 79
Query: 78 NLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITVD 117
+S +GK +T +++G +G+V ++ S++ T I+V+
Sbjct: 80 -----NSMVGKGVTLKSVDSEGKPYTGIVKSV-TSTSAKTTISVE 118
>gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 262
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
++L + Q+K+QDPT PM+ E + Q A +Q+E +M ++++
Sbjct: 1 MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDM 45
>gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 668]
gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia
pseudomallei 305]
gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei DM98]
gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei NCTC 13177]
gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e]
gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia
pseudomallei 305]
gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e]
Length = 241
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
D F KLL QI++Q+P EPM AS+ V Q+ + Q E
Sbjct: 44 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 79
>gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei]
Length = 231
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
D F KLL QI++Q+P EPM AS+ V Q+ + Q E
Sbjct: 34 DLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTE 69
>gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
15264]
gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
15264]
Length = 222
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELLKSNNLAQA 82
+ FL LL +Q+K+QDP P+ +++ QL S +EQ + N L + L A
Sbjct: 27 ETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGVEQQLMTNDLLTSLLAAQQGGGLGGA 86
Query: 83 SSYIGKNIT 91
++YIGK+ T
Sbjct: 87 ANYIGKDAT 95
>gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
Length = 224
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 26 DAFLKLLITQIKHQDPTEPM---KASEQVAQLAVFSQMEQSVQMNSTLQEL 73
D FLKLL+ Q+++QDP PM + + Q+AQ+ S +E ++N ++Q +
Sbjct: 34 DRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVSGIE---KVNESIQAM 81
>gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus
CB15]
gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus
NA1000]
gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15]
gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter
crescentus CB15]
gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus
NA1000]
Length = 227
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQ 81
++ FL+LL TQ+K+QDP P ++ Q+ + +EQ + N L L+ N L++
Sbjct: 28 KETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALVGMNTGTGLSE 87
Query: 82 ASSYIGKNI 90
+ IGK +
Sbjct: 88 GVAMIGKQV 96
>gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 184
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQASSY 85
+KLL+ Q+ +QDP PM ++ +Q+A + + ++N+T++ E S + Q +S
Sbjct: 1 MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60
Query: 86 IGKNITNADGSIS 98
+G + G++S
Sbjct: 61 VGHGVLVESGTLS 73
>gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 43
Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
Query: 27 AFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQ 62
+FL LL+ Q+K+QDPT P++ +E Q+AQ++ S +E+
Sbjct: 2 SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEK 40
>gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus
Koribacter versatilis Ellin345]
gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus
Koribacter versatilis Ellin345]
Length = 92
Score = 37.4 bits (85), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
F +LL+ Q+K QDPT PM S+ V+QL + ++
Sbjct: 30 FAQLLVAQLKSQDPTSPMDPSQLVSQLVGLNTLD 63
>gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
Length = 187
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 36 IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90
+++QDPT PM ++ +QLA F+ Q+NSTL L+ S A+ ++G+N+
Sbjct: 1 MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNV 58
>gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009]
gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD
[Rhodopseudomonas palustris CGA009]
gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
Length = 237
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS---SYIGKNITNA 93
K+Q+PT+P+ ++ QL F+ +EQ ++ N +L L++ AQA+ S +G N
Sbjct: 50 KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGAN---- 105
Query: 94 DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+V+ +V T AI +T+ P++ + I
Sbjct: 106 -----AIVDGSKVQMTKGNAIWSLSTDKPVSAQVSI 136
>gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 219
Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE------QVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ Q+ FLK+L+ I+ QDP SE ++ +L V + E ++Q T L+S
Sbjct: 30 MSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQ---TFVSTLQS 86
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
+L AS++IGK + +G+ + V N +S L++
Sbjct: 87 QSLFFASNFIGK-LVEYEGNQTYVQNGTGYASFSLSS 122
>gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
Length = 222
Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S
Sbjct: 33 FLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANS 81
>gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 213
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
FL L++ Q+K+QD P+ ++ V QLA S M+Q QM + +S +G
Sbjct: 78 FLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQMAYNAKSTY-------VTSLVG 130
Query: 88 KNITNADGSISG 99
K ++ A ++SG
Sbjct: 131 KYVSAAKFTVSG 142
>gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis]
Length = 97
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 44 PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI--S 98
PM+ ++ VAQ+A F+ +E QM + Q K NNL ++A + +GK + DGSI S
Sbjct: 3 PMEDTQFVAQMAQFTSLE---QMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVS 59
Query: 99 GVVNA 103
GV+ A
Sbjct: 60 GVITA 64
>gi|53713059|ref|YP_099051.1| hypothetical protein BF1770 [Bacteroides fragilis YCH46]
gi|52215924|dbj|BAD48517.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 386
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 7 VNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+N + +F KS + K G DAF K + DP P+ + F++++
Sbjct: 268 LNKIETDFKKSLNLAYKIFGNDAFRK----RYSETDPRNPINKAYFEVITVTFAELDDQA 323
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVN 102
N T++ + +NL QA +G+ ++ G+ V N
Sbjct: 324 HDNLTVKAPILKHNLIQAMGTLGRYLSQGTGTTDSVFN 361
>gi|256420019|ref|YP_003120672.1| TonB-dependent receptor plug [Chitinophaga pinensis DSM 2588]
gi|256034927|gb|ACU58471.1| TonB-dependent receptor plug [Chitinophaga pinensis DSM 2588]
Length = 1109
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 11 QQEFSK--SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q + SK S ++TL QD +LKLL K+ T+P+K ++Q + +FS+ V N
Sbjct: 351 QTDISKAISNRQRTLTQDEYLKLLYETYKN---TDPIKWTDQAIKSDLFSKFSYRVNGND 407
Query: 69 TL 70
T+
Sbjct: 408 TI 409
>gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3]
gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3]
Length = 195
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASE---QVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+ +D FLKL + + QDP M ++ Q AQL++ Q++ + LQ + S L
Sbjct: 52 MNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQVQNMTKAVDKLQATMYSTAL 111
Query: 80 AQASSYIGKNI 90
++GK +
Sbjct: 112 DGGMKFLGKYV 122
>gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas
palustris CGA009]
gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas
palustris CGA009]
Length = 265
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S
Sbjct: 76 FLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANS 124
>gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas
tunicata D2]
gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas
tunicata D2]
Length = 240
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
L Q F L+ Q+ QDP P +AQ+ S E M + + + SN
Sbjct: 34 LSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEGVSNMATKFDQFAVSMTSNQA 93
Query: 80 AQASSYIGKNI 90
QASS +G+N+
Sbjct: 94 LQASSLVGRNV 104
>gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli]
gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042]
Length = 234
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-SVQMNS 68
D FL L + +I++QDPT+ + +Q++ +A + ME+ SVQ N+
Sbjct: 37 DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANT 80
>gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
Length = 224
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
K +LG+D FLKLL+ ++K+QDPT PM + + ++Q + + +E + N L+ L S
Sbjct: 27 KSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83
>gi|228994536|ref|ZP_04154377.1| Polysaccharide deacetylase [Bacillus pseudomycoides DSM 12442]
gi|228765215|gb|EEM13928.1| Polysaccharide deacetylase [Bacillus pseudomycoides DSM 12442]
Length = 242
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQ-DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+F S +K + Q+ ++L Q K + T P K + QV ++A + + Q +
Sbjct: 3 QFFTSPAKGVMNQENSVQLASEQTKGEMKKTAPDKYNGQVRKVAYLTFDDGPSQFQKEIL 62
Query: 72 ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++LKSNN+ IG NI S+ +VN + G+ ++T DN ++ I
Sbjct: 63 DILKSNNIKGTFFMIGGNIPAHKESVKRLVN--EGHYPGVHSMTHDNKKLYI 112
>gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris
BisA53]
gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris
BisA53]
Length = 221
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ-------SVQMNSTLQELLKSNNLA 80
FL LL+ ++++Q+P +P ++ +QL ++ EQ ++++ LL N
Sbjct: 32 FLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLN--- 88
Query: 81 QASSYIGKNIT 91
+S+YIG+ +T
Sbjct: 89 -SSNYIGQTVT 98
>gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 218
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME--QSVQ-MNSTLQELLKSNNL 79
+ Q+ FLK+L+ +K QDP S+ + QME S+Q + TL +N++
Sbjct: 30 MSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESLDSIQKLVDTLSTF--TNSI 87
Query: 80 AQASSYIGKNI 90
ASS IGK +
Sbjct: 88 VNASSMIGKKV 98
>gi|71280743|ref|YP_270181.1| RND family efflux transporter MFP subunit [Colwellia
psychrerythraea 34H]
gi|71146483|gb|AAZ26956.1| efflux transporter, RND family, MFP subunit subfamily [Colwellia
psychrerythraea 34H]
Length = 421
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKL---LITQIKHQDPTEPMKASEQVAQL 54
+E++ V Q++F++ K+ KK + Q AF ++ L QIK+++ + + E + Q
Sbjct: 149 IELDFSVLRLQKDFNRHKALIEKKIISQQAFERVEDELAFQIKYRETVKESQEKEAILQS 208
Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93
+Q+EQS+Q TLQ +NLA + S + K I A
Sbjct: 209 QQLAQLEQSIQ---TLQ-----SNLAISRSSLDKLIIRA 239
>gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
Length = 435
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMK------ASEQVAQLAVFSQMEQSVQMNST 69
+ S++ G A LK+++T + P P+K A++ + A + E SVQ+ +
Sbjct: 311 RPSSEEGDGDQAGLKIVLTD--NPKPPAPLKVSPTLRAAQASTKPAKKAAGEWSVQVGAF 368
Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
+ L L+ S K ++NA+G++ G A + G+TA
Sbjct: 369 KSKALAREQLSLVRSRFAKVVSNAEGAVEGAEGAFRAQFQGMTA 412
>gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
Length = 176
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL ++ KLL Q+ +QD + PM S+ + Q+ SQM VQ + L E KS
Sbjct: 30 KNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQM---SQMAM-VQSLTALTESTKSATS 85
Query: 80 AQASSY----IGKNITNADGSISGVVNAIQVSSTGLTAITVD-NTEIP 122
SY IGK +T S + +Q S T ++V+ N E P
Sbjct: 86 MSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVNFNGESP 133
>gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2]
gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2]
Length = 245
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS 96
+P +P+ ++ AQL F+Q+EQ ++ N S+L L K+ QA S++G+ I+ DGS
Sbjct: 56 NPLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTIS-VDGS 114
>gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD
[Gluconacetobacter diazotrophicus PAl 5]
gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 258
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ---ASSYIGKNIT 91
DP+ PM + +LA F+ +EQ VQ N+ L L+ N +Q +S +GK T
Sbjct: 67 DPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTAT 121
>gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
Length = 233
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 40 DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGS 96
+P EP+ ++ QL F+ +EQ ++ N TL LLK + A QA ++IG
Sbjct: 50 NPLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIGA-------- 101
Query: 97 ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ VV+ + G TA +T+ P+T + +
Sbjct: 102 -TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133
>gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
Length = 215
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 9/69 (13%)
Query: 28 FLKLLITQIKHQDP------TEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
FLK+L+ ++ QDP T+ ++ + ++ ++ V + +++V++ L+E ++N+L
Sbjct: 31 FLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVEL---LKETNEANSLLY 87
Query: 82 ASSYIGKNI 90
AS IGK +
Sbjct: 88 ASGLIGKKV 96
>gi|271499620|ref|YP_003332645.1| mechanosensitive ion channel protein MscS [Dickeya dadantii Ech586]
gi|270343175|gb|ACZ75940.1| MscS Mechanosensitive ion channel [Dickeya dadantii Ech586]
Length = 1137
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 10/79 (12%)
Query: 32 LITQIKHQDPT-EPMKASEQVA----QLAVFSQMEQ---SVQMNSTLQELLKSNNLAQAS 83
L TQ+ DP+ EP++ S+QV Q+ V QMEQ S+++N+TLQ+LL+ A+
Sbjct: 199 LRTQLSGLDPSQEPLRPSQQVLLQAEQVLVSLQMEQQRKSLEVNTTLQDLLQKQRDYTAA 258
Query: 84 SYIGKNITNADGSISGVVN 102
IG+ + + ++ GV+N
Sbjct: 259 Q-IGQ-LEHMVQTLQGVIN 275
>gi|229000969|ref|ZP_04160424.1| Polysaccharide deacetylase [Bacillus mycoides Rock3-17]
gi|228758786|gb|EEM07875.1| Polysaccharide deacetylase [Bacillus mycoides Rock3-17]
Length = 265
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQ-DPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+F S +K + Q+ ++L Q K + T P K + +V ++A + + Q +
Sbjct: 26 QFFTSPAKGVMNQENTVQLASEQTKGEIKKTAPDKYNGRVRKVAYLTFDDGPSQFQKEIL 85
Query: 72 ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
++LKSNN+ IG NI S+ +VN + G+ ++T DN ++
Sbjct: 86 DILKSNNIKGTFFMIGGNIPAHKESVKRLVN--EGHYPGVHSMTHDNKKL 133
Searching..................................................done
Results from round 2
>gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 131
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM
Sbjct: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE
Sbjct: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
Query: 121 IPITTGIRISN 131
IPITTGIRISN
Sbjct: 121 IPITTGIRISN 131
>gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis]
gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis]
Length = 228
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 75/109 (68%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
L + FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++ ++Q
Sbjct: 27 NLNYNDFLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQ 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
AS YIGK I +ADG +G + + V + G+ A T +I I G+ I+
Sbjct: 87 ASDYIGKQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135
>gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 125
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 94/125 (75%), Positives = 106/125 (84%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+N TQ+E SK +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM
Sbjct: 1 MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG
Sbjct: 61 NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120
Query: 127 IRISN 131
IR+S+
Sbjct: 121 IRVSS 125
>gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus
str. 2308 A]
gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus
str. 2308 A]
gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
Length = 151
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/111 (50%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 41 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151
>gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
Length = 190
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ+ + +KK D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN L
Sbjct: 19 QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78
Query: 71 QELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+++L + ++ A Y+GK I D I G V ++ + S G+ A + ++ I G+
Sbjct: 79 EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVATLDNGEKVLIGPGV 138
Query: 128 RI 129
+
Sbjct: 139 TV 140
>gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea
phototrophica DFL-43]
gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea
phototrophica DFL-43]
Length = 133
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M+I+ ++ + S + + K TL D FL LL+ Q+K+QDPT+PM ++EQ+AQLA F
Sbjct: 1 MDISPLAAASRSQGSAADTAANKATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATF 60
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
SQ+EQ++Q N L+ELL+S++L+QA S IG+ IT+ D ++SG + +QV S GL A+ D
Sbjct: 61 SQVEQTIQTNKHLEELLQSSSLSQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLED 120
Query: 118 NTEIPITTGIRI 129
T++ + G+ I
Sbjct: 121 GTKVVVGPGVSI 132
>gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C]
Length = 170
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L +
Sbjct: 24 AGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSN 83
Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ A Y+GK I D I G V +I + S G+ A + ++ I G+++
Sbjct: 84 GLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 139
>gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73]
gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae
73]
Length = 169
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 3/116 (2%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +KK D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN TL ++L +
Sbjct: 23 AGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMNETLTQMLSN 82
Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
++ A Y+GK I D I G V +I + S G+ A + ++ I G+++
Sbjct: 83 GSINGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138
>gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC
BAA-1498]
Length = 169
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL ++L +
Sbjct: 23 AGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLSQMLSN 82
Query: 77 NNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ A Y+GK I D I G V +I + S G+ A + ++ I G+++
Sbjct: 83 GLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138
>gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp.
BNC1]
gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1]
Length = 129
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M ++T V T Q + + +T+ +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+
Sbjct: 1 MNVST-VTSTPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQMNS L+++L ++ L+QA IG+ IT+ADGS++G+V +++ S G+ A E
Sbjct: 60 EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119
Query: 121 IPITTGIRIS 130
+ + G+ IS
Sbjct: 120 VVVGPGVVIS 129
>gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
Length = 136
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 46/123 (37%), Positives = 79/123 (64%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N T+ + + +AFL+LL+T+++HQDP +PM ++ V QLA F+ +EQ++Q N
Sbjct: 14 NSTRAASVANAAADAGNYNAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQTN 73
Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
S L L +++ L+QASS IG+ +++ADG SGVV ++ + G+ A+ D ++ + G+
Sbjct: 74 SLLASLNENSALSQASSLIGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGPGV 133
Query: 128 RIS 130
IS
Sbjct: 134 TIS 136
>gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti
MAFF303099]
gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium
loti MAFF303099]
Length = 135
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/129 (42%), Positives = 93/129 (72%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ T + +KS SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3 VDMTTTIPVGANSTTKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G+V ++ ++S+GL A+ D T+
Sbjct: 63 EQSVQSNTKLDQIMQSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTK 122
Query: 121 IPITTGIRI 129
+P+ G+ I
Sbjct: 123 VPVGPGVSI 131
>gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp.
H13-3]
gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp.
H13-3]
Length = 156
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 51/121 (42%), Positives = 80/121 (66%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S KS +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L
Sbjct: 17 AGASSNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHL 76
Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ +L++ L +AS +GK + +AD ++GVV ++V S G+ AIT ++ + G+ S
Sbjct: 77 KSMLQAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVTFS 136
Query: 131 N 131
N
Sbjct: 137 N 137
>gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3]
Length = 169
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+KK D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ+++MN TL ++L +
Sbjct: 24 GAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAIKMNETLAQMLSNG 83
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
++ A Y+GK I D I G V +I + S G+ A + ++ I G+++
Sbjct: 84 SINGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVKV 138
>gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 1 str. 16M]
gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330]
gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv.
1 str. 9-941]
gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis
biovar Abortus 2308]
gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC
25840]
gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC
23365]
gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC
23445]
gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus
S19]
gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str.
Cudo]
gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis
ATCC 23457]
gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv.
6 str. 870]
gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv.
3 str. Tulya]
gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv.
2 str. 86/8/59]
gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5
str. 513]
gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3
str. 686]
gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella
pinnipedialis M163/99/10]
gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella
pinnipedialis B2/94]
gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti
M644/93/1]
gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti
M13/05/1]
gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv.
4 str. 292]
gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM
4915]
gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella
pinnipedialis M292/94/1]
gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 1 str. Rev.1]
gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae
5K33]
gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis
bv. 3 str. Ether]
gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti
M490/95/1]
gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94]
gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv.
9 str. C68]
gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
63/9]
gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99]
gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1]
gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94]
gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1]
gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33]
gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99]
gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1]
gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1
str. 16M]
gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis
1330]
gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella
abortus bv. 1 str. 9-941]
gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping
protein [Brucella melitensis biovar Abortus 2308]
gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis
ATCC 25840]
gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365]
gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19]
gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str.
Cudo]
gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457]
gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM
4915]
gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94]
gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1]
gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1]
gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33]
gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99]
gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1]
gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
Ether]
gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis
M28]
gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis
M5-90]
Length = 137
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/111 (50%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 87 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137
>gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium
medicae WSM419]
gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419]
Length = 138
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 83/120 (69%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
+ E + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ+EQ+++ N
Sbjct: 18 SGTESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQVEQTIKTNKN 77
Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
L+ LL+ +L++A + IG+ +T+ADG +GVV +++ S G+ A+ E+ I G+++
Sbjct: 78 LESLLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGKELVIGPGVKV 137
>gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2]
gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2]
Length = 137
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/127 (44%), Positives = 87/127 (68%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
T T + + +K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQS
Sbjct: 11 TTNSASTAGNSTSAANKASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQS 70
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
VQMNS L+ L+ + +L QA +IG+ +T+ADGSI+GVV ++ + S+G+ A D + I
Sbjct: 71 VQMNSKLETLIANTSLTQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTI 130
Query: 124 TTGIRIS 130
G+RIS
Sbjct: 131 GEGVRIS 137
>gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13]
gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13]
gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF
2653]
gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1]
gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13]
gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1]
gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF
2653]
Length = 137
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/111 (49%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +T+ADGSISGVV ++ + S+G+ A D + I G+RIS
Sbjct: 87 TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137
>gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum
intermedium LMG 3301]
gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum
intermedium LMG 3301]
Length = 136
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/114 (47%), Positives = 84/114 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ +
Sbjct: 23 AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+L QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS
Sbjct: 83 TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136
>gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum
anthropi ATCC 49188]
gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188]
Length = 136
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/111 (48%), Positives = 82/111 (73%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L
Sbjct: 26 KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS
Sbjct: 86 TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136
>gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 135
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 91/129 (70%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ T + + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3 VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G V +++++S GL A+ + TE
Sbjct: 63 EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122
Query: 121 IPITTGIRI 129
+ + G+ +
Sbjct: 123 VAVGPGVSV 131
>gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN
42]
gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
Length = 142
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/115 (52%), Positives = 88/115 (76%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++SK TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S
Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 81 SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135
>gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512]
Length = 141
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/112 (52%), Positives = 85/112 (75%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 83 TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134
>gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum
WSM2075]
gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum
WSM2075]
Length = 135
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 90/129 (69%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ T + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3 VDMTTTIPVGSNSTTTSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
EQSVQ N+ L+++++S+ L+QA + IG+ IT+ADG +G V ++ ++S GL A+ D T+
Sbjct: 63 EQSVQTNTKLEQIMQSSALSQADAIIGRTITSADGKTTGTVASVTLASNGLIAVLQDGTQ 122
Query: 121 IPITTGIRI 129
+P+ G+ I
Sbjct: 123 VPVGAGVSI 131
>gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli
Brasil 5]
Length = 118
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 84/111 (75%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L
Sbjct: 1 ATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLT 60
Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++
Sbjct: 61 QASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111
>gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium
meliloti 1021]
gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti]
gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium
meliloti 1021]
gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 2 EINTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+ PT + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ
Sbjct: 8 NTSNSYTPTVSATDSAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
+EQ+++ N L+ LL+ L++A + IG+ +T+ADG +GVV +++ S G+ A+
Sbjct: 68 VEQTIKTNKNLESLLQRTALSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127
Query: 120 EIPITTGI 127
E+ I G+
Sbjct: 128 ELVIGPGV 135
>gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium
tumefaciens str. C58]
gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58]
Length = 157
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 80/121 (66%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S K+ +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ L
Sbjct: 17 AGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNTHL 76
Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ +L++ L +AS +GK + +AD ++GVV +QV S G+ A+T ++ + G+ S
Sbjct: 77 KSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVVFS 136
Query: 131 N 131
N
Sbjct: 137 N 137
>gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1]
Length = 160
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
++KK D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N L ++L +
Sbjct: 26 EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85
Query: 78 NLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
++ A Y+GK I +ADG I G V +I + + G+ A +N ++ I GI +
Sbjct: 86 SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140
>gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4]
gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4]
Length = 136
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+++T + PT + S ++ +D FLK+L+ Q+ H DP P K +++++
Sbjct: 1 MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTA 113
+ +EQ +++ S+L + L Q +S +GK +T ADGS ++G V +++ G
Sbjct: 61 NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRL-EDGKIR 119
Query: 114 ITVDNTEIPITTGIRI 129
+ +D E P+ +
Sbjct: 120 LVIDGREYPLAAVKEV 135
>gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium
radiotolerans JCM 2831]
gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
Length = 139
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 75/107 (70%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L LL S+ L+QA
Sbjct: 32 LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+G +T+AD +++G V +++V+S GL A + ++ G+ +
Sbjct: 92 GGLVGHTVTSADKTLTGTVVSVEVASNGLLAHLDNGKDVRYEPGMTV 138
>gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp.
4-46]
gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
Length = 142
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 81/116 (69%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ SK+ +L DAFL+LL+TQ+K+QDPT+PM ++ + +LA FS++EQS +MN+ L LL
Sbjct: 27 TTSKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDALL 86
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
SN L+QA S IG+ T+ DG I+GVV ++++++ G A D ++ + G+ +S
Sbjct: 87 SSNYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142
>gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168]
gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168]
Length = 142
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
L +DAF KLLITQ++HQDP +PM+ E +AQ+A FS +EQ MN L ++ +L+
Sbjct: 29 NNLDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMANMNENLSTFMRMESLS 88
Query: 81 QASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
Q ++ IG+N+ D +SG V + S L A ++ +IP+ T IS
Sbjct: 89 QGAALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKIPVDTITSIS 142
>gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 142
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/115 (49%), Positives = 85/115 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++SK TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S
Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI I++
Sbjct: 81 SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135
>gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 136
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 80/123 (65%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + + TL + FLKL++ Q+++QDP P +++ ++Q+A FS +EQ +
Sbjct: 9 NTSGTSNADANDKTKNSTLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGI 68
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
N+ L +LL ++N++QAS+ IG ++T+ADGS+SG+V ++++ STG TAI + E+ I
Sbjct: 69 NTNAKLDQLLVNSNISQASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRID 128
Query: 125 TGI 127
G+
Sbjct: 129 QGV 131
>gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
574]
gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
574]
Length = 138
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 1 MEINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
M +N+ N S K KTL +DAFL++++ Q+K+QDPT PM + + Q+A F+
Sbjct: 1 MAVNSVNNDLFYDNNKSPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFT 60
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116
+EQ +NS ++L L SS IG +T N D +ISG V + + +TG+
Sbjct: 61 TLEQITNLNSNFEKLYSLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATGVKIWVA 120
Query: 117 DNTEIPITTGIRIS 130
D ++ +
Sbjct: 121 D-KPYDLSQITSVE 133
>gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 131
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 16/137 (11%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS++ N +A + IGK IT+ +G ++ G V+ + G
Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVD-VVYKQNGEY 112
Query: 113 AITVDNTEIPITTGIRI 129
+ V+ +IP+ +
Sbjct: 113 FLEVNGIDIPLDAVTAV 129
>gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 131
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP +PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS+ N +A + IGK IT+ +G +++G V+ + G
Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVD-VVYKQNGEY 112
Query: 113 AITVDNTEIPITTGIRIS 130
+ V+ ++P+ +S
Sbjct: 113 FLQVNGIDVPVDAVTAVS 130
>gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
20745]
gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
20745]
Length = 150
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 3 INTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ + NP S + LG+ FL LL Q+++QDP PM+ +E +AQLA + +
Sbjct: 6 VTNQTNPGTDAASSTTFSPADRLGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSL 65
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116
EQ QMN TL L++ + LAQ +S IG+++T D G I GVV+ + + G + V
Sbjct: 66 EQMQQMNETLSTLVEMSVLAQTASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNV 124
Query: 117 DNTEIPITTGIRIS 130
T +P+ + I
Sbjct: 125 GGTAVPLAHVVSIG 138
>gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC
27405]
gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20]
gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC
27405]
gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20]
Length = 323
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
+ S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N +
Sbjct: 18 STTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77
Query: 70 LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121
+ +A IGK IT G + G+V ++++ G + V+ ++
Sbjct: 78 F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129
Query: 122 PITTGIRIS 130
P+ + +S
Sbjct: 130 PVDNVLSVS 138
>gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313]
Length = 323
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N +
Sbjct: 19 TTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKSF 78
Query: 71 QELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ +A IGK IT G + G+V ++++ G + V+ ++P
Sbjct: 79 -------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDVP 130
Query: 123 ITTGIRIS 130
+ + +S
Sbjct: 131 VDNVLSVS 138
>gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
Length = 158
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 49/108 (45%), Positives = 75/108 (69%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L + FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++ ++QA
Sbjct: 28 LNYNDFLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQA 87
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S YIGK I +ADG+ +G + + V S G+ A T +I + G+ ++
Sbjct: 88 SDYIGKEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135
>gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
6725]
Length = 164
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118
+N + + +A S IG+ + + +I G +++I+V + + V+
Sbjct: 69 QNLNESFE-------FLKAQSMIGRYVVATNPADTSKTIEGRIDSIRVDGS-KVYLKVNG 120
Query: 119 TEIPITTGIRI 129
TE+ +
Sbjct: 121 TEVLFDNVKEV 131
>gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
Length = 131
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME+NT + + S+ SKK LG+D FLKLL+ Q+K+Q+P PM E +AQLA FS
Sbjct: 1 MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADGS---ISGVVNAIQVSSTGLT 112
+EQ +N++ + +A + +GK +T+ +G + G V+A+
Sbjct: 61 LEQMQNLNTSF-------SAVRAINLLGKNIYATVTDNNGESKAVEGKVDAV-YKQNEEY 112
Query: 113 AITVDNTEIPITTGIRIS 130
+ V+ ++P+ +S
Sbjct: 113 FLEVNGIDVPLDAVTAVS 130
>gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii
NGR234]
gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii
NGR234]
Length = 148
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/108 (58%), Positives = 84/108 (77%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA
Sbjct: 33 LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S+YIGK IT++DG SGVV ++V+S G+TAIT D EI I TGI +S
Sbjct: 93 STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140
>gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
Length = 263
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N+ T S + +L ++ FL LL+TQ+K+QDP P ++E V+QLA FS +EQ
Sbjct: 6 VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119
MN++L+ L L YI ++T + G ++ G V+++ + S G A+ V
Sbjct: 66 MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTM-SNGEAALVVGGK 121
Query: 120 EIPITTGIRISN 131
I ++ + +
Sbjct: 122 SIELSDVCAVYD 133
>gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 131
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 16/137 (11%)
Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T S LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS++ N +A + IGK IT+ +G ++ G V+ + G
Sbjct: 61 LEQMQNMNSSI-------NAIRAINLIGKNIYATITDNNGNSRTVIGKVD-VVYKQNGEY 112
Query: 113 AITVDNTEIPITTGIRI 129
+ V+ +IP+ +
Sbjct: 113 FLEVNGIDIPLDAVTAV 129
>gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
200]
gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
200]
Length = 131
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 16/138 (11%)
Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS
Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGK----NITNADG---SISGVVNAIQVSSTGLT 112
+EQ MNS+ N +A + IGK IT+ +G +++G V+ + G
Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSQTVTGKVD-VVYKQNGEY 112
Query: 113 AITVDNTEIPITTGIRIS 130
+ V+ ++P+ +S
Sbjct: 113 FLQVNGIDVPVDAVTAVS 130
>gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium
extorquens PA1]
gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium
chloromethanicum CM4]
gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
Length = 138
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 74/109 (67%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+ D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q
Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
A + IG+++T+ADG ISG V +++V+ G+ A D E+ + +GI IS
Sbjct: 90 ADAIIGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis
MB4]
Length = 131
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 20/140 (14%)
Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M +NT + P+ Q +KSK LG+D FL LL+TQ+K+QDP P+ E +AQLA F
Sbjct: 1 MNVNTNYSVLPPSNQNKVTTKSK--LGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQF 58
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADG-----SISGVVNAIQVSSTG 110
S +EQ +N + + +A + IGKN+ T DG + G V+A+ G
Sbjct: 59 SALEQMQNLNESFNSV-------KAIALIGKNVYATINDGNGNYKEVFGKVDAV-YRENG 110
Query: 111 LTAITVDNTEIPITTGIRIS 130
+ V +IP+ ++
Sbjct: 111 QYFLKVKGLDIPLDAVRAVT 130
>gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 144
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 83/114 (72%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S+
Sbjct: 22 QQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASS 81
Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI +++
Sbjct: 82 SLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135
>gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata
IAM 12614]
gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata
IAM 12614]
Length = 131
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 7 VNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
V+ T+ S + ++K L D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+
Sbjct: 7 VSATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSI 66
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
Q N+ L+ LL + + Q IG+ +T+A+G+ +GVV ++V S G + I +
Sbjct: 67 QTNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDGTVLALDNGKGILLG 125
Query: 125 TGIRIS 130
G+ IS
Sbjct: 126 PGVTIS 131
>gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
HTCC2506]
gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
HTCC2506]
Length = 136
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 69/128 (53%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ Q + DAFL+LL+ Q+K+QDP P +++E +AQ A F+ +EQ
Sbjct: 9 VTQAQGAAAQNGITKGGAPEMDYDAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQ 68
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
S+Q N+ L+ ++ + L QA + IG+ +T+ DG+ G V +I+ G+ A I
Sbjct: 69 SIQTNTRLESMMTVSALTQADALIGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIM 128
Query: 123 ITTGIRIS 130
+ G+ ++
Sbjct: 129 LGDGVSVA 136
>gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
SI85-9A1]
gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
SI85-9A1]
Length = 134
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 72/126 (57%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T Q S + K + DAFLKLL+ ++ +QDP P ++E VAQ A FS +EQ++
Sbjct: 9 TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
Q N L ++ + L QA+S IG+ T+ADG++SG V A++ + + AI +P+
Sbjct: 69 QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128
Query: 125 TGIRIS 130
+G +
Sbjct: 129 SGTTVG 134
>gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
2002]
gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 164
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 13/131 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118
+N + + +A S IG+ + + +I G +++I+V + + V+
Sbjct: 69 QNLNESFE-------FLKAQSMIGRYVVATNPADTSKTIEGRIDSIRVDGS-KVYLKVNG 120
Query: 119 TEIPITTGIRI 129
TE+ +
Sbjct: 121 TEVLSDNVKEV 131
>gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130]
gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130]
Length = 131
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
++ K + D+FLKLL+ ++++QDPT+PM++SE VAQLA FS +EQS+Q N+ L LL
Sbjct: 19 QAAQKAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGVEQSIQTNTKLDALLA 78
Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
N L QA + IG+ +T D ++G+V+++ + S + + D + ++ +S
Sbjct: 79 GNVLGQAGTMIGRTVTAGD--VTGLVDSVAIESGSASLVLDDGRRVALSAVSGVS 131
>gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421]
gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis]
gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421]
Length = 163
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+E++ Q E K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ +
Sbjct: 26 LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVVNAIQVSSTGLTAITVDN 118
EQ ++ + ++L + ++A + +GK + DGSI SGV+ A + + + VD
Sbjct: 86 EQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA--ATRGEIPQVQVDG 143
Query: 119 TEIPITTGIRI 129
+T +
Sbjct: 144 KWYDWSTVKTV 154
>gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium
extorquens DM4]
gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein
[Methylobacterium extorquens DM4]
Length = 138
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+ D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q
Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS
Sbjct: 90 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578]
Length = 145
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L
Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92
Query: 80 AQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+QA S +GK + N D ISGVV ++ + V+ + +
Sbjct: 93 SQAFSLLGKTVVIKNGDEEISGVVEEVR--GREFPQLLVNGRYFDMNQIESV 142
>gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein
[Methylobacterium extorquens AM1]
gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein
[Methylobacterium extorquens AM1]
Length = 135
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/109 (44%), Positives = 73/109 (66%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+ D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q
Sbjct: 27 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS
Sbjct: 87 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135
>gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium
populi BJ001]
gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001]
Length = 138
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
+ D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L
Sbjct: 29 SKMNADTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLN 88
Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA + IG++IT+ADG +G V +++V+ G+ A D E+ + +GI IS
Sbjct: 89 QADAIIGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138
>gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum
subsp. pallidum SS14]
gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum]
gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum
subsp. pallidum SS14]
gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 153
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+E++ V Q E +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS +
Sbjct: 19 LEMDVRVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDN 118
EQ M++ +++L +A +GK +T AD ++ G+++A+ + + V +
Sbjct: 79 EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAVTRAD--KPQVRVGS 136
Query: 119 TEIPITTGIRISN 131
I++
Sbjct: 137 HWYEWEHVKVIAD 149
>gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56]
Length = 159
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/115 (49%), Positives = 85/115 (73%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S
Sbjct: 35 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
++L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++
Sbjct: 95 SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149
>gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 135
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
+ + S++K L +DAFLK+ + Q+++QDP P +E +A+LA F +EQ +
Sbjct: 13 STSANAASQTKLNLDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQLTNLTDA 72
Query: 70 LQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L +LL+ AQA++ IGK + T A+ + GVV+A++ S ++ V+ E
Sbjct: 73 LTKLLQFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWSGD-QISLVVNGQEYSPDKV 131
Query: 127 IRI 129
I +
Sbjct: 132 IEV 134
>gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
Length = 185
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 1 MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
ME+N + + +S KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F+
Sbjct: 1 MEVNQTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMFT 60
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITV 116
+EQ +N+ ++ L L ASS IGK + + + G V + + I V
Sbjct: 61 TLEQMTNLNTNMERLYHLQELNHASSLIGKRVNLIAEEEQVIGEVERVTLGEN-SVNIWV 119
Query: 117 DNTEIPITTGIRIS 130
+ I +
Sbjct: 120 AGHPYSLDQVISVE 133
>gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
108]
gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
108]
Length = 164
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 13/131 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V+ + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118
+N +++ L +A S IG+ + +A I G V++I++ + + V+
Sbjct: 69 QNLNESVE-------LLKAQSMIGRYVVATSPQDASKLIEGRVDSIKIDGS-KVYLKVNG 120
Query: 119 TEIPITTGIRI 129
TE+ +
Sbjct: 121 TEVLSDNVKEV 131
>gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 197
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
++ + +S +LG+D FLK+LI Q+ +Q+P +PM E +AQ+A F+ +EQ M
Sbjct: 27 KSETKTMRSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMTFMAE 86
Query: 69 TLQELLKSNNLAQASSYIGKNITNADG-------SISGVVNAIQVSSTGLTAITVDNTEI 121
+ +L +S L AS+ IGK+++ + GVV+AI + G+ + + EI
Sbjct: 87 QMYDLRQS--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIGKEEI 143
Query: 122 PITTGIRISN 131
PI R+ +
Sbjct: 144 PIDLITRVGD 153
>gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
Length = 138
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+ +++ +G+D FL+L +TQ+K+Q+P EPM E +AQ A F+ MEQ MN
Sbjct: 13 NVEGTGKQTEDSNKMGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQMKNMNQ 72
Query: 69 TLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
L++ L L Q SS IGK + D I+G V ++++ +G + ++ E +
Sbjct: 73 NLEKFLGMQKLTQVSSLIGKEVKALDSDSGEEITGEVEKVKMADSG-PKLIINGNEYEMG 131
Query: 125 TGIRI 129
+ I
Sbjct: 132 SVNEI 136
>gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
Length = 186
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 11/126 (8%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L +
Sbjct: 21 STKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLTAM 80
Query: 74 LKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITT 125
S +L ASS IGK I+ DGS SG+V++I + G+ V E+ +
Sbjct: 81 --SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSI-IVRDGVHYAKVGENEVSLDQ 137
Query: 126 GIRISN 131
++I N
Sbjct: 138 IVKIEN 143
>gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 141
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 73/113 (64%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
T+ +FL+LL+ ++K+QDPT P ++ ++QLA FS +EQ VQ NS L LL +++
Sbjct: 29 PPATVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASS 88
Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
L QA + IGK IT+ADGSISG V ++ VSS TA + ++ + GI I +
Sbjct: 89 LGQAETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141
>gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
Length = 145
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L
Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92
Query: 80 AQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+QA S +GK + +G ISGVV ++ T + V+ + +
Sbjct: 93 SQAFSLLGKTVVIKNGGQEISGVVEEVR--GTEFPQLLVNGRYFDMNQIESV 142
>gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453]
gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453]
Length = 188
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 12/129 (9%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L
Sbjct: 19 NVSNKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLT 78
Query: 72 ELLKSNNLAQASSYIGKNITN----ADGS-----ISGVVNAIQVSSTGLTAITVDNTEIP 122
+ S +L ASS IGK I+ DGS SG+V++I V G+ + +E+
Sbjct: 79 AM--SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSIIVR-DGIHYAKIGESEVA 135
Query: 123 ITTGIRISN 131
+ ++I N
Sbjct: 136 LDQILKIEN 144
>gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
Length = 186
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 11/128 (8%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ L
Sbjct: 19 NVSTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINTQLT 78
Query: 72 ELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTEIPI 123
+ S +L ASS IGK I+ DGS SG+V++I V G+ V +E+ +
Sbjct: 79 AM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESEVSL 135
Query: 124 TTGIRISN 131
++I N
Sbjct: 136 DQIVKIEN 143
>gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
Length = 132
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M++N+ + + S+ K L ++AFL+L + Q+K+QDP P ++ + QL+ FS
Sbjct: 1 MQVNSVTSEYYRPPDNSREPLKALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSM 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVD 117
+EQ +N + + L +A++ +G+ + DG +SG V + V G + V+
Sbjct: 61 LEQLASLNEEVTLARRFQELGEAAALLGRQVKVQTGDGDVSGQVEKVAVVE-GEVRLFVN 119
Query: 118 NTEIPITTGIRI 129
T + +
Sbjct: 120 GTGYGLDKVTEV 131
>gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41]
gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41]
Length = 228
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ +K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++
Sbjct: 23 KKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVE 82
Query: 72 ELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLTAIT 115
LL S Q +Y +GK + + SGV+ +++ +
Sbjct: 83 SLLASQQQTQMMNYATFVGKEVKWHEISDKTDEKGEPIVNEGSGVIESLKFVDGSVVFKL 142
Query: 116 VDNTEIPITTGIRI 129
D EI I
Sbjct: 143 ADGKEITPGNISGI 156
>gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
Length = 161
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 14/137 (10%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ +++ +K +G+DAFLKLLITQ+++QDP +PM+ E ++Q+A FS +EQ MN
Sbjct: 16 DYVREQRAKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMN 75
Query: 68 STLQELLKSNNLAQ---ASSYIGK------NITNADG-----SISGVVNAIQVSSTGLTA 113
+ + L+S +Q S IGK + N +G ++S +V A++ T
Sbjct: 76 ENMNKFLESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATI 135
Query: 114 ITVDNTEIPITTGIRIS 130
+T E+ + +I+
Sbjct: 136 LTESGKELSVDDIQKIA 152
>gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 164
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T V + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ
Sbjct: 9 STNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDN 118
+N + + L +A + IG+ I ++ I G V +++V + + V+N
Sbjct: 69 QNLNESFE-------LLKAQNMIGRYIVATNPQDSSKQIEGRVESVKVDGS-KVYLKVNN 120
Query: 119 TEIPITTGIRI 129
TEI I
Sbjct: 121 TEISSENVKEI 131
>gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. natto BEST195]
Length = 140
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ
Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63
Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117
+ +N+T+ + +++ + ++GK ++ DG +G V++++ + D
Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123
Query: 118 NTEIPITTGIRIS 130
TEI + +
Sbjct: 124 GTEISPANVMSVG 136
>gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. subtilis str. SMY]
gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis
BSn5]
gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName:
Full=ORF 8
gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
168]
gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis
BSn5]
Length = 140
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ
Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQ 63
Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117
+ +N+T+ + +++ + ++GK ++ DG +G V++++ + D
Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123
Query: 118 NTEIPITTGIRIS 130
TEI + +
Sbjct: 124 GTEISPANVMSVG 136
>gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus halodurans
C-125]
gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125]
Length = 171
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + LG+D FL++LI Q+++QDP PM E +AQ+A FS +EQ MNS +
Sbjct: 14 ENRPKEQSNSGILGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAI 73
Query: 71 QELLK---SNNLAQASSYIGKNITN-----------ADGSISGVVNAIQVSSTGLTAITV 116
Q+ +K S L Q S IGK +T + + V ++++ + G +I +
Sbjct: 74 QQFVKQQTSQTLVQHSELIGKRVTWKRIIDIDEYRQKEELVENTVTSVRLETNGNVSIQL 133
Query: 117 D-NTEIPITTGIRIS 130
D I +++S
Sbjct: 134 DSGRWISADQLVQVS 148
>gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
Length = 242
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
++ K K LGQD FLKLL+TQ+++QDP PM+ E +AQ+A FS +EQ Q+NS ++
Sbjct: 19 ASNQPKHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLEQLTQVNSNIKT 78
Query: 73 LLKSN---NLAQASSYIGKNITNADGSIS---GVVNAI 104
++ +N + A +IGK + SIS G ++ +
Sbjct: 79 MIDNNAQDQMVSAVGFIGKEVKAEGYSISRDNGKISKV 116
>gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
Length = 192
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112
MEQ M + L + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ +DN + + RIS+
Sbjct: 147 QLVIDNKVVSLRFVERISD 165
>gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
Length = 159
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+ +
Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTSL 86
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDN 118
EQ MN + L + + A + +GK + + G++SG + A + V+
Sbjct: 87 EQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITAATRGEN--PQVQVNG 144
Query: 119 TEIPITTGIRI 129
+ +
Sbjct: 145 KWYAWSDVQTV 155
>gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR]
gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR]
Length = 146
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ + QE K LG+D FLKLL+TQ+K+QDP EP + +AQ+A FS +E
Sbjct: 6 NVSDAGSTQSQEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALE 65
Query: 62 QSVQMNSTLQELLKSN-------NLAQASSYIGKNIT----NADGSISGVVNAIQVSSTG 110
Q M+ +L++ ++QA IGK + + + ++G V A+++ G
Sbjct: 66 QMTNMSDGFTKLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIV-DG 124
Query: 111 LTAITVDNTEIPITTGIRI 129
+ V+ EI + +
Sbjct: 125 EPRVVVNGKEIGLGYISMV 143
>gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 131
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 14/137 (10%)
Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
ME+NT + + S++ S LG+D FL+LL+ Q+++QDP +PM E +AQLA FS
Sbjct: 1 MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQ--VSSTGLTA 113
+EQ +N + N +A + IGKN+ T+ +G+ + VV + G
Sbjct: 61 LEQMQNLNVSF-------NAVRAINLIGKNVYATITDDNGNSTSVVGNVDAVYKQNGEYY 113
Query: 114 ITVDNTEIPITTGIRIS 130
+ V+ ++P+ +S
Sbjct: 114 LEVNGIDVPLDAVTAVS 130
>gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
Length = 140
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S + L++
Sbjct: 19 RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQ 78
Query: 76 SNN---LAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ N L + S +IGKN+ + + SGVV ++ + + + I + I++
Sbjct: 79 TQNNQALLRYSEWIGKNVYWQEEENTKSGVVKSVLQKDNQIFLELDNGSTINASLVIKVE 138
Query: 131 N 131
+
Sbjct: 139 S 139
>gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 164
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + +
Sbjct: 17 QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE 76
Query: 72 ELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L +A S IG+ + ++ I G V +++V + + V+NTEI
Sbjct: 77 -------LLKAQSMIGRYVVATNPQDSSKQIEGRVESVKVDGS-KVYLKVNNTEISSENV 128
Query: 127 IRI 129
I
Sbjct: 129 KEI 131
>gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus
weihenstephanensis KBAB4]
gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4]
Length = 192
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQEF----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSESAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M + L + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ +DN + + R+S+
Sbjct: 147 QLVIDNKIVSLRFVERVSD 165
>gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus
licheniformis ATCC 14580]
gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus
licheniformis ATCC 14580]
gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2]
gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580]
gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580]
gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2]
Length = 155
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ K+ S LG+D FLKLL+ Q+++QDP PM+ E +AQ+A FS +EQ +N+T+
Sbjct: 28 AKKAEKAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNTTM 87
Query: 71 QELLKSNN-LAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ + + S+IGK +T + +V +++ S + D TE+
Sbjct: 88 STFVGLQDPMTMYVSWIGKEVTYEGEDSEEKTALVKSVKSSDGQYLLVLDDGTEVNPWNV 147
Query: 127 IRIS 130
+S
Sbjct: 148 TAVS 151
>gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp.
WCH70]
gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70]
Length = 140
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S +++ +K
Sbjct: 19 RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQMINISSMIEQFIK 78
Query: 76 SN---NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ L + S +IGKN+ + + SG+V ++ + + T I + +++
Sbjct: 79 TQHDHALLRYSEWIGKNVYWQEDENTKSGIVQSVSQKDQQIFLELDNGTTIKASLVVKVE 138
Query: 131 N 131
+
Sbjct: 139 S 139
>gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 263
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T ++K K LG++ FL LL+TQ+ HQDP PM E VAQLA FS +EQ ++
Sbjct: 16 TNDPYAKRKG-ADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGG 74
Query: 70 LQELLKSNNLAQ---ASSYIGKNITNADGSIS---GVVNAIQVS 107
+ L ++N Q A +IGK + A S+S G +++ +
Sbjct: 75 IDNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFA 118
>gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 140
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I++E ++ + + S +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ
Sbjct: 4 ISSEYKLPEKTSTVTTSNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63
Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITVD 117
+ MN T+ + +++ + ++GK ++ DG +G V++++ S I D
Sbjct: 64 MMNMNKTMTQFVENQDPFTSYVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDD 123
Query: 118 NTEI 121
TEI
Sbjct: 124 GTEI 127
>gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
Length = 297
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
++ T + ++ LG+D F+ LL+TQ+++QDP P ++ +AQ+A FS +EQ +
Sbjct: 16 IDDTSATKASERNTGELGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQMQNL 75
Query: 67 NSTLQELLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDN 118
N+ S + QA IGK +T + +I+G V ++++ S G + V+
Sbjct: 76 NT-------SYSATQAFGMIGKTVTANLKDGDSSKTNTITGEVTSVKMQS-GKAYVIVNG 127
Query: 119 TEIPITTGIRISN 131
+IP+ + +
Sbjct: 128 NDIPVENVQEVKD 140
>gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 194
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ +K LG+D FLKLL+TQ+ HQDPT P++ + +AQ+A FS +EQ ++S + +
Sbjct: 49 EKQKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM---- 104
Query: 78 NLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
Q+ S +GK ++ D ++G+ AI + G T + V+ + ++ IS+
Sbjct: 105 ESKQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVSKINLISD 162
>gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
Length = 149
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ K+++ L +DAFL++LITQ+++QDP PM+ E +AQ+A F+ +EQ MN+ LQ
Sbjct: 15 QKQQKARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQ 74
Query: 72 ELLKS--NNLAQASSYIGKNI------TNADGS-----ISGVVNAIQVSSTGLTAITVDN 118
+ L S N S IGK + N DGS + GVV +++ + + + D
Sbjct: 75 KFLDSHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQNGSASLVIDDQ 134
Query: 119 TEIPITTGIRISN 131
+ I +
Sbjct: 135 HTVSTKDIQVIKS 147
>gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 134
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 2 EINTEVNPTQQEFSKSKS-KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
E+N +++ KK LG+D FLK+LI Q+ HQDP +P+K + +AQ+A FS +
Sbjct: 3 EVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSAL 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117
EQ + + ++ L K + +A A +Y+G+ + D +GVV +++ +T D
Sbjct: 63 EQQMNIAKGIEGLSKLS-MASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLAD 121
Query: 118 NTEIPITTGIRIS 130
IP+ +
Sbjct: 122 GNSIPMEKVQYVG 134
>gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium
japonicum USDA 110]
gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110]
Length = 140
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 3/111 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ + FL+LL+ ++K+QDPT PM S+ ++Q A S +EQ++Q N+ L LL S +L+QA
Sbjct: 28 VDYNTFLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQA 87
Query: 83 SSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IGK ++ D + SG V +I ++S G A + T++ + G+ IS
Sbjct: 88 DGLIGKTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138
>gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
Length = 134
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
T+ +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + + Q
Sbjct: 27 TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ +T+++G+ +GVV +++ S G + + + G+ IS
Sbjct: 87 VDDLIGRTVTDSNGT-TGVVEKVEIYSDGTILGLDNGKGVLLGPGVSIS 134
>gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas
palustris BisA53]
gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
Length = 135
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
N ++ S S S T+G + FL+LLI Q+K+QDP+ P ++ ++Q A S +EQ++
Sbjct: 7 GAANSSKSSSSSSSSSATVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSVEQAI 66
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEI 121
Q N+ L LL ++ L+QA IG+ + D S +G + ++ + G A ++
Sbjct: 67 QTNAKLDTLLSTSALSQAEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDTGVQV 126
Query: 122 PITTGIRIS 130
+ GI IS
Sbjct: 127 LLGPGITIS 135
>gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 171
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 13/124 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N +
Sbjct: 17 KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76
Query: 71 QELLKSNNLAQASSYIGKNI---TNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITT 125
+ L +A S IG+ I + DG I G V++I+V + + V+ TE+
Sbjct: 77 E-------LLKAQSMIGRYIVATSTQDGLKQIEGRVDSIRVDGS-KVFLKVNGTEVLSDN 128
Query: 126 GIRI 129
+
Sbjct: 129 IKEV 132
>gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
Length = 152
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + + + L +AFL L + +K QDPT+P+ +E + QLA FS +EQS
Sbjct: 10 NGASSNEPVFKPQGSEQAYLDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQS 69
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT--NADG--SISGVVNAIQVSSTGLTAITVDNT 119
+ N+ L +L+ +++ QA++ IG + NADG + +GV+ ++Q+ + G A D T
Sbjct: 70 TKTNTHLTAMLQQHSINQANNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGT 129
Query: 120 EIPITTGIRIS 130
++ + GI IS
Sbjct: 130 KVALVPGIEIS 140
>gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 134
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ +E + S QD FLKLL+ Q+K+ P P + + Q A F +E+
Sbjct: 6 VGSEYALPGKTTPPRPSSGLFDQDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLER 65
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTE 120
V++ L+E+ ++ LAQA+ +G+ + D ISG V + ++ G + +
Sbjct: 66 LVKVEEALREMSRAAYLAQAAEIVGREVVVLAGDRQISGTVERVLLNERG-ARVVLGAES 124
Query: 121 IPITTGIRI 129
I + +
Sbjct: 125 YDINRVVEV 133
>gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium
caulinodans ORS 571]
gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium
caulinodans ORS 571]
Length = 138
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ + FL+LL+ Q+K+QDPT+PM ++ ++QLA FSQ+EQ N L LL ++ L A
Sbjct: 29 VDYNQFLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSA 88
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITV-DNTEIPITTGIRIS 130
+ IGK +T+ADG++SG V ++ + S G T+ D +++ + + + IS
Sbjct: 89 DAAIGKTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSIS 137
>gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
Length = 140
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
K LG+D FLKLL Q+++QDP P+ ++ +AQ+A FS +EQ + + E L
Sbjct: 19 PNKGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL---- 74
Query: 79 LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ QA IGK +T D +++G V+ + S G+ +TV ++ + ++
Sbjct: 75 MLQAVGLIGKEVTARINDQTLTGTVSKVNWSPEGII-LTVGEQQVSLKDVQEVA 127
>gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli
IE4771]
Length = 146
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/114 (50%), Positives = 84/114 (73%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S+
Sbjct: 21 QKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSS 80
Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++
Sbjct: 81 SLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134
>gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
Length = 192
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M +
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LKSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp.
B14905]
gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp.
B14905]
Length = 229
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M ++ LL
Sbjct: 27 TKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTKAVESLL 86
Query: 75 KSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLTAITVDN 118
S Q +Y +GK + + SGV+ +++ + D
Sbjct: 87 ASQQQTQMMNYATFVGKEVKWHEITDKTDEKGDPVVNEGSGVIESLKFVDGSVVFKLADG 146
Query: 119 TEIPITTGIRI 129
EI I
Sbjct: 147 KEITPGNISGI 157
>gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
Length = 131
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
TL +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + + Q
Sbjct: 24 TLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMSFGQ 83
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ T+A G+ +GVV +++V S G + I + G++IS
Sbjct: 84 VDDLIGRTATDAIGT-TGVVTSVEVYSDGTLLGLDNGKGILLGPGVKIS 131
>gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
Length = 264
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT-AITVDNTEIPITT 125
+ + S +GK++ A G V + + TG+ A+ DN I +
Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITVRP 145
>gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
Length = 192
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M +
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Query: 73 L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + S + ++GK + DG+ ++G V ++++ + +DN + +
Sbjct: 101 LKTTMYSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 271
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISTGIQKM----GNR 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
Q+ S +GK ++ D +++G+ A+ G T + V+ I + IS+
Sbjct: 106 QSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160
>gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
Length = 170
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 13/118 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N++ +
Sbjct: 22 SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSFE----- 76
Query: 77 NNLAQASSYIGKNITNADG-----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+A S IG+ + + I G V++I+V + + V++TE+ +
Sbjct: 77 --FLKAQSMIGRYVIATNAQDGARQIEGRVDSIRVDGS-KVFLKVNDTEVLSDNVKEV 131
>gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
Length = 184
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
+K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++
Sbjct: 23 AVSDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENL 82
Query: 73 ------LLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116
L +++ L+Q ++ IGK++ A+ G ++G+V ++Q + + V
Sbjct: 83 VGAFGALFQNSLLSQGAALIGKHVEGANIDGSGFVNGIVESVQWLNGNPQLVLV 136
>gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S]
gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S]
Length = 147
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V +I+ + + + V+ + +
Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVKGRVTSIK--TGAMPQVMVNGNYYVYKNILSVG 144
>gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
17100]
Length = 100
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+L+ Q+++QDPT+P ++ ++QLA FS +EQ V NS L LL ++Q +S IGK +
Sbjct: 1 MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60
Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
T+ADG+ISG + +I++SS+G A D + I + +G+ IS
Sbjct: 61 TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100
>gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
Length = 147
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G+ + G V +I+ + + I V+ + +
Sbjct: 91 EIRKDLDLLGKVIKFQHGNGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144
>gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae
91E135]
gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae
91E135]
Length = 144
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
+ + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ +
Sbjct: 20 SNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79
Query: 70 LQELLKSNNLAQASSYIGKNITNA--DGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ L + + +GK + DG I G V I+ + + I +D
Sbjct: 80 FESLSSVLGINKDLDLLGKIVEFEHVDGEIIKGKVTNIK--TGIVPQIMIDGKYYVYNNI 137
Query: 127 IRIS 130
+ +
Sbjct: 138 LSVG 141
>gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus
1942]
gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus
1942]
Length = 142
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81
LG+D FLK+L+ Q+++QDP P+ E ++Q+A FS +EQ + +N+T+ + + +
Sbjct: 26 LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85
Query: 82 ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
++IGK+++ ++G +G V++++ S + D EI +
Sbjct: 86 YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEISPWNVTSVG 138
>gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii
PKo]
gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo]
Length = 147
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V +I+ + + I V+ + +
Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144
>gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus
kaustophilus HTA426]
gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426]
gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
Length = 142
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++
Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIANLMQQWMQ 79
Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+++ L + S +IGK + DG +S VV ++ +T + T I +++
Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAADAVVKVE 139
>gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603]
gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621]
gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621]
gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603]
Length = 192
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S ++ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M + L + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ +DN + + R+S+
Sbjct: 147 QLVIDNKIVSLRFVERVSD 165
>gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
Length = 136
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K LG+D FLKLL+ Q+++QDP +PM+ E +AQ+A FS +EQ +NST+ +
Sbjct: 22 KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77
Query: 78 NLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
QA IGK + + +G V A+++S I V +T + ++ +
Sbjct: 78 ---QAMGLIGKTVRWQNENGAEQAGNVRAVKISDR-QPYIVVGDTTVELSKIQVVE 129
>gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
Length = 230
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ +K LG+DAFLKLLITQ++HQDPT PM E ++Q+A FS +EQ M ++
Sbjct: 23 KKPTKQTGNSELGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTKAME 82
Query: 72 ---ELLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTGLTAIT 115
+ + + +++IGK + + GV+ +++ +
Sbjct: 83 SLLSSQQQSQMMNYATFIGKEVKWHEITEEKDEKENPVVNEGIGVIESLKFVDGSVVFKL 142
Query: 116 VDNTEIPITTGIRI 129
D EI I
Sbjct: 143 ADGKEISPGNISGI 156
>gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
str. Hildenborough]
gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
str. Hildenborough]
gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1]
Length = 265
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---S 68
Q K LG+DAFL+LL+TQ+KHQDP PM E VAQLA F+ +EQ + +N +
Sbjct: 17 QSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTSLEQLMGINTGVT 76
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ E K + A SYIGK++ + IS + + +
Sbjct: 77 SMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGVS 113
>gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803]
gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803]
Length = 192
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P Q S+ K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVGQTNGVSASEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112
MEQ M + L + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNEV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ +DN + + R+S+
Sbjct: 147 QLVIDNKVVSLRFVERVSD 165
>gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO]
gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO]
Length = 219
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + + S+ TL +DAFL LLITQ+K+QDP EPM + +AQL FS +EQ
Sbjct: 6 DYSYSTYTSSERTPSNTLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITN 65
Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
M +++QE L AQ++S IGK T I+ GV +I + V
Sbjct: 66 MTNSIQEFLTLQEGALQAQSASLIGKYATVQANQITVSDGVSESIVFELDEAAPVIV 122
>gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
Length = 148
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ
Sbjct: 8 NRTVAQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67
Query: 64 VQMNSTLQELLKSNNLAQA--------SSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113
MN ++ +L + + A +IGK ++ D ISG V +++ +
Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127
Query: 114 ITVDNTEIPITTGIRIS 130
D T+I +
Sbjct: 128 YLEDGTKISPWDVTAVG 144
>gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
Length = 141
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
TQQ + + + + +D FL+LL+TQ+++QDP +P SE VAQ+A F+ +EQ +N+T
Sbjct: 13 TQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQNLNNT 72
Query: 70 LQELLKSNNLA--QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124
+ +LL + A +++G ++T D + ++G+V+A++ G + +D +
Sbjct: 73 MAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVE-YDNGKPRLVIDGNRYGLE 131
Query: 125 TGIRIS 130
+ +++
Sbjct: 132 SVQKVT 137
>gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
10987]
gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus
ATCC 10987]
Length = 192
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M +
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 134
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ +N + LG+D FL+LL+TQ+++QDP PM E +AQ+A FS +EQ
Sbjct: 9 NSYMNTYTDGTKVTNPNSELGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT------NADGSISGVVNAIQVSSTGLTAITVD 117
+N + + +A S +GK +T + +++G V++++ + L + ++
Sbjct: 69 QNLNESF-------SAVKAYSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNL-YLEIN 120
Query: 118 NTEIPITTGIRISN 131
+++ + + +S+
Sbjct: 121 GSDVSLDSVTSVSD 134
>gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp.
Y412MC61]
gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61]
gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
Length = 142
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + +Q+ ++
Sbjct: 20 RKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIANLMQQWMQ 79
Query: 76 SNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+++ L + S +IGK + DG +S VV ++ +T + T I +++
Sbjct: 80 ASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAADAVVKVE 139
>gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 192
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
+ K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100
Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
LQ + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1]
gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40]
Length = 147
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ
Sbjct: 17 NKVKKKTDFNVENISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120
M+ + ++L S + + +GK I G + G V I+ + + + V+
Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134
Query: 121 IPITTGIRIS 130
+ +
Sbjct: 135 YVYKNILSVG 144
>gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 142
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 1 MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
M +N + VN + K + K LG+D FLKLLITQ+ HQDP EP+ +E +AQ+A FS
Sbjct: 1 MAVNQVSSVNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFS 60
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAI 114
+EQ + ++ LL S A SYIGK + D + V + +
Sbjct: 61 TLEQMTNVAKGVESLL-SVTKLNAQSYIGKEVIYYDDNTGLYQQSSVRSAIFEDGEVYLE 119
Query: 115 TVDNTEIPITTGIRIS 130
+ I + ++
Sbjct: 120 LENGKYILLDEIKAVT 135
>gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
16646]
gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
16646]
Length = 129
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + + LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS +EQ +NS +
Sbjct: 14 SGDDNPAVGRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSLEQLQNLNSQI 73
Query: 71 QELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPITTGI 127
+ A S+IGK + +SG++ + L I D + +P+
Sbjct: 74 SAM-------SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDEEKLVPLQDVY 126
Query: 128 RI 129
I
Sbjct: 127 EI 128
>gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1]
gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1]
Length = 192
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
+ K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100
Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
LQ + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi
B31]
gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi
80a]
gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi]
gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi]
gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31]
gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
Length = 147
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ
Sbjct: 17 NKVKKKTDFNVDNISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120
M+ + ++L S + + +GK I G + G V I+ + + + V+
Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134
Query: 121 IPITTGIRIS 130
+ +
Sbjct: 135 YVYKNILSVG 144
>gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
Length = 264
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM----GNR 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+
Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160
>gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus
H3081.97]
gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293]
gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus
H3081.97]
gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293]
Length = 192
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
+ K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100
Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
LQ + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51]
gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 193
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
+K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++
Sbjct: 26 AVSDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENL 85
Query: 73 ------LLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG--LTAITVDNT-- 119
L +++ L+Q ++ IGK + + + G+V ++Q L + D
Sbjct: 86 VGAFGALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQWLDGNPQLVVLLDDGKYS 145
Query: 120 EIPITTGIRISN 131
I + I +S+
Sbjct: 146 AIEMNEIISVSD 157
>gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1]
Length = 145
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M +N + S + + L ++AFLKLLI ++ +QDP PM+ E +AQ+A F
Sbjct: 1 MPVNGVAGAVNTDPSAATGAVRQNELDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQF 60
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT 91
S +EQ MN TL+ + +++ A SYIGK I+
Sbjct: 61 SSLEQMQNMNKTLESMAQASKFD-AVSYIGKAIS 93
>gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus
AH187]
gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus
AH187]
gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
Length = 192
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M +
Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100
Query: 73 L---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + S L ++GK + DG ++G V ++++ + +DN + +
Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160
Query: 127 IRISN 131
R+S+
Sbjct: 161 ERVSD 165
>gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
Length = 374
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 101 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 160
Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ ++ Q +S +G+ + +G V+A++ + G + + ++
Sbjct: 161 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 220
Query: 123 ITTGIRISN 131
+ + I++
Sbjct: 221 MEDILGIAD 229
>gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus
B4264]
gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus
B4264]
gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
Length = 192
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112
MEQ M LQ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLVINNKVVSLRFVERVSD 165
>gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium]
Length = 159
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+ +
Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTSL 86
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDN 118
EQ MN L + + A + +GK + + G++SG + A + V+
Sbjct: 87 EQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITAATRGEN--PQVQVNG 144
Query: 119 TEIPITTGIRI 129
+ +
Sbjct: 145 KWYAWSDVQTV 155
>gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
Length = 192
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M LQ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLVINNKVVSLRFVERVSD 165
>gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Lai str. 56601]
gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
serovar Lai str. 56601]
Length = 264
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++
Sbjct: 50 KSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM----GNR 105
Query: 81 QASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+
Sbjct: 106 QSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160
>gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
Length = 151
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ S L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS +EQ
Sbjct: 13 NSSGYASPTSVINPNSQLDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSALEQMTN 72
Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+ ++ + + A+ +IGK I+ D G+I V GL + + +P
Sbjct: 73 VAEGQEKAATATEMQAAAEWIGKRISYLDDKGNIQSGVAQAMQVKEGLVYLDLGGLSVPW 132
Query: 124 TTGIRISN 131
++ + + +
Sbjct: 133 SSILEVGD 140
>gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli
95/1000]
gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli
95/1000]
Length = 233
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + +K +LG+D FLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAIT 115
+ + + S +GK++ A G V + + TG+
Sbjct: 87 ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134
>gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus
SAFR-032]
gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus
SAFR-032]
Length = 148
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ
Sbjct: 8 NRTVTQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67
Query: 64 VQMNSTLQELLKSNNLAQA--------SSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113
MN ++ +L + + A +IGK ++ D ISG V +++ +
Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127
Query: 114 ITVDNTEIPITTGIRIS 130
D +I +
Sbjct: 128 YLEDGMKISPWDVTAVG 144
>gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1]
gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1]
Length = 147
Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V I+ + + + V+ + +
Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144
>gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
Length = 149
Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
++LG+D FLKLL+TQ+++QDPT+PM+ E +AQ+A FS +EQ ++ + +
Sbjct: 33 NQSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLEQMNNLSQQFVSVKNTLGR 92
Query: 80 AQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
A IG+ + D I G V A+ S + V+ T + +SN
Sbjct: 93 NAAYDLIGRQVDILQGDQKIHGTVEAV--SGKDYPQLLVNGTYYDYDSVETVSN 144
>gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 241
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + LG+ FLKLLITQ+++QDP +PM E VAQLA FS +EQ ++ +
Sbjct: 19 NNDIPRDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEGM 78
Query: 71 QELLKSNN---LAQASSYIGKNITNADGSIS 98
+ + ++ + A +IGK I IS
Sbjct: 79 ESMNENQARQEMLGAVGFIGKEIRADGDGIS 109
>gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 226
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+I ++ T E + +K LGQ FL+L+ITQ+++QDP +PM++ E + QLA F +
Sbjct: 10 DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113
+ + + S QA++ + +++T I G+ A+QV ++
Sbjct: 70 GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129
Query: 114 ITVDNT 119
I V N
Sbjct: 130 IGVYNQ 135
>gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus
AH1134]
gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185]
gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus
AH1134]
gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185]
gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 192
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M LQ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLVINNKVVSLRFVERVSD 165
>gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
Length = 134
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/108 (49%), Positives = 78/108 (72%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL +L S +L QA
Sbjct: 27 LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
S+IGK +T+ADGS+SGVV ++ + S+ TA D + I +TTGI +S
Sbjct: 87 QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134
>gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 167
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 22/142 (15%)
Query: 8 NPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N +Q K+ +K LG+DAFLKL+I Q+++QDP PM ++ VAQ+A F+ +EQ +
Sbjct: 13 NYSQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNI 72
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSIS------------------GVVNAIQVSS 108
+ + L +S L S IGK +T + + G+V +I V S
Sbjct: 73 SEQIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESIIVRS 130
Query: 109 TGLTAITVDNTEIPITTGIRIS 130
G+ + V + EI I+ ++
Sbjct: 131 -GVHYVKVGDKEIKISDIEQVG 151
>gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 192
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M LQ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLVINNKVVSLRFVERVSD 165
>gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116]
gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116]
Length = 147
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S
Sbjct: 31 ANKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V I+ + + I V+ + +
Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVKGRVTNIK--TGAIPQIMVNGNYYVYKNILSVG 144
>gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 222
Score = 98.5 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ ++ + ++ + LGQD FLKL+ITQ+++QDP PM++ E ++Q+A F+ Q+
Sbjct: 10 DYSRAQPTQREPAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFTTASGMDQLQ 69
Query: 68 STLQEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVN 102
+ E +++N QA+S +G+ + ADG ++G+V
Sbjct: 70 KSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIVQ 115
>gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
Length = 192
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M + L + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLIINNKVVSLRFVERVSD 165
>gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
Length = 149
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ MN ++
Sbjct: 35 KVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMNQEFAKMNSML 94
Query: 78 NLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+QA IGK + T D +GVV A+ + + V+N + +
Sbjct: 95 VSSQAVGTIGKTVDITLGDTKTTGVVEAVTYGAN--PQVRVNNMYYDMKQISAV 146
>gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
4028]
gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
4028]
Length = 226
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ LG+DAFLKLL+TQ+++QDP P+ E +AQLA FS +EQ ++ ++ L
Sbjct: 15 ADTAAKNDVLGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKGL 74
Query: 74 L---KSNNLAQASSYIGKNITNADGSISG---VVNAIQVSSTGLTAITVDN 118
++ A +YIGK +T + I+ V + + G A N
Sbjct: 75 SDKTAQQDMLSAVNYIGKEVTASGDGITKSGNYVTPVYFTLGGAAAQVYAN 125
>gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1]
gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1]
Length = 146
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+ LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ MN + + L
Sbjct: 31 KESNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENLSSILG 90
Query: 79 LAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + + +GK + + I G V +++ I +D + + +
Sbjct: 91 VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYSNVLSVG 143
>gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus
thermodenitrificans NG80-2]
gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
Length = 142
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + + + +Q+ ++
Sbjct: 20 RKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIANLMQQWMQ 79
Query: 76 SN---NLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
++ L + S +IGK + D ++S VV ++ + + T I ++
Sbjct: 80 ASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSVMQKDGKIVLELNNGTTIAADVVTKVE 139
>gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
Length = 163
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
Q+ + +K TLG+D FLK+L+TQ+++QDP++P++ + +AQ+A FS +EQ +
Sbjct: 14 NYSTSNVQKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLM 73
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVD 117
M+ + +L NL ASS IG + T + SG+V AI + G+ V
Sbjct: 74 NMSEEMTKLR--QNLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIK-DGVQYAKVG 130
Query: 118 NTEIPITTGIRIS 130
+ + + I+
Sbjct: 131 DKTVKVDDLTSIT 143
>gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
Length = 335
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + +K LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 65 TDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 124
Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ ++ Q +S +G+ + +G V+A++ + G + + ++
Sbjct: 125 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 184
Query: 123 ITTGIRISN 131
+ + I++
Sbjct: 185 MEDILGIAD 193
>gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus
G9842]
gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus
G9842]
gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
Length = 192
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ K+ +G+D FLKL ++ +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLT 112
MEQ M LQ + S L ++GK + DG ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ ++N + + R+S+
Sbjct: 147 QLVINNKVVSLRFVERVSD 165
>gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 284
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 3 INTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
I +N T EF+ + SK+ L +D+F+ LL+TQ K+QDP PM+ E +AQ+A FS
Sbjct: 4 ITQSLNRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSS 63
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116
+EQ + +N++++ L + + A+SYIGK +T + +I G V + +T
Sbjct: 64 LEQLMNLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTI-GKVTDETTKESTITRFRY 122
Query: 117 DNTEIPITTGIRISN 131
+ + I + +
Sbjct: 123 APADNTVGGTITVRD 137
>gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 279
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ V+ FS+ K LG++ FLKLL+TQ K+QDP PM+ E +AQLA FS +EQ +
Sbjct: 7 SGVSSATGIFSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQM 66
Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
N ++ LL + A+S+IGK + +S
Sbjct: 67 STNEKMESLLNLQTQQQMISAASFIGKEVAARGYGVS 103
>gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
Length = 139
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K LG+D FLKLLI Q+ +QDP +P+K + +AQ+A F+ +EQ+ M ++ L K + +
Sbjct: 27 KNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETLTKLS-M 85
Query: 80 AQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
A Y+G+ + D S +G V ++ +T D + + + +++
Sbjct: 86 TSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLALDKVEQVA 139
>gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
12680]
Length = 171
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M ++ + S +K LG+D F KLLIT++K+QDP EPMK E +AQ+A FS
Sbjct: 1 MPVSGVTSSESSTAITSAAKSQILGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSS 60
Query: 60 MEQSVQMNSTLQELLKSNNL-----------AQASSYIGKNI--TNADGSISGVVNAIQV 106
+EQ MN+ LQ L + N +A + +G+ I A G+ G V +I V
Sbjct: 61 LEQMYNMNTNLQSLSTALNSYVSTLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-V 119
Query: 107 SSTGLTAITVDNTEIPITTGIRI 129
G+ +TV+ ++ + +
Sbjct: 120 LKDGVPYLTVNGEQVSLAQVTSV 142
>gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
Length = 218
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
ME+++ +PT S T + FL++L TQ+++QDP PM++ + QLA FS +
Sbjct: 1 MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60
Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKN 89
EQ V+ N L + S L++ + +IG+
Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGRE 92
>gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1]
gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1]
Length = 211
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ + + Q+ + K LG+D F+K+L+TQ+++QDP PM+ + +AQ+A FS +EQ
Sbjct: 7 SNLLLSSLQQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQI 66
Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITN------ADGSIS-----GVVNAIQVSST 109
++ +++ ++ NNL + ++GK IT ++G G+V++++
Sbjct: 67 TNLSKSMETFIEAQGQNNLIAYNQFVGKEITWHKLEESSEGRTEIKEGKGIVSSVRFQDN 126
Query: 110 GLTAITVDNTEIPITTGIRI 129
+ I + T + ++
Sbjct: 127 EVQFIMENGTILAPGNVSQV 146
>gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
Length = 152
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
++ VN + S +++ LG+D FLKLLI Q+++QDP P +E + Q+ FS
Sbjct: 3 VDPTNPVNNAPATYDNSTRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSI 62
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSST 109
+EQ + T Q ++ AQA IG+ ++ N DG S +G V ++ +S+
Sbjct: 63 LEQITNLGQTTQAAASNDYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSS 122
Query: 110 GLTAITVDNTE 120
G +T+D
Sbjct: 123 G-PQLTIDGRT 132
>gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2143]
gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2143]
Length = 224
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+E++ ++ + K+ LGQD FL+L++TQ+++Q+P +P SE VAQLA FS +E
Sbjct: 11 SELSAREKYAPANTEKQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLD 70
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSST 109
++N+T++ +SN QAS+ +G+++ ADG ++G + Q +
Sbjct: 71 KLNNTMEGFVGSFQSNQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQSTDD 126
>gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus
pseudofirmus OF4]
gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus
pseudofirmus OF4]
Length = 169
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + + LG+D FLKLLITQ+++QDP+ PM E +AQ+A FS +EQ MN+T+
Sbjct: 13 QPKPTSNTGQNMLGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNTI 72
Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISG-----------VVNAIQVSSTGLTAITV 116
Q+ + S +L Q S IGK + V +++V G I +
Sbjct: 73 QKFVDVQTSQSLVQFSELIGKEVKWVQEVDVDEYRTELQYNDNKVQSVKVDFDGTIRILL 132
Query: 117 DN 118
DN
Sbjct: 133 DN 134
>gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis
S4]
gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4]
Length = 151
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 77/109 (70%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+ ++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++ L +A
Sbjct: 41 MDYNSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRA 100
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+GK +T++DG +GVV+ ++V+ +T T + + TG+ S+
Sbjct: 101 GDIVGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149
>gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
Length = 220
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ +N + + K L +DAFLKL +TQ+K+QDP PM EQ+AQLA FS +
Sbjct: 2 IDTTAYLNSVNKNATPKTPSKDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTV 61
Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98
E+ ++ + L K+ N A+ YIGK + +S
Sbjct: 62 ERLTNISKAMDGLTKTVNAMMGLNATGYIGKTVMAKGFGVS 102
>gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04]
gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04]
Length = 147
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V I+ + + + V+ + +
Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144
>gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT
894]
Length = 112
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 51/98 (52%), Positives = 73/98 (74%)
Query: 34 TQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93
Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L LL S++L QASSY+GK + +A
Sbjct: 1 AQMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESA 60
Query: 94 DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
DG++ G + +++V S G+ A T D I + GI +++
Sbjct: 61 DGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98
>gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii
DAH]
gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH]
Length = 144
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
+ + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ +
Sbjct: 20 SNSKVQRGVKGSNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79
Query: 70 LQELLKSNNLAQASSYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ L + + +GK + + DG I G V I+ + + I +D
Sbjct: 80 FESLSSALGANKDLDLLGKIVEFEHTDGEIIKGKVTNIK--TGVVPQIMIDGKYYVYNNI 137
Query: 127 IRIS 130
+ +
Sbjct: 138 LSVG 141
>gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr]
gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr]
Length = 147
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+K LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + + L S
Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFERLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V I+ + + + V+ + +
Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144
>gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
35239]
gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
35239]
Length = 334
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 70 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 129
Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ ++ Q +S +G+ + +G V+A++ + G + + ++
Sbjct: 130 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 189
Query: 123 ITTGIRISN 131
+ + I++
Sbjct: 190 MEDILGIAD 198
>gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
14863]
gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
14863]
Length = 139
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + LG+ FL+LL+TQ+++QDP P+ E +AQLA FS +EQ
Sbjct: 19 QTAESRRPTDQLGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQMT------- 71
Query: 72 ELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
E ++ L+ S +G + T I G+V A+++ S G + + N EI + I
Sbjct: 72 ENVRWARLSYGLSLVGAAVKYWGTEGQPEI-GIVYAVRIDS-GEPLLNLGNREIRLEQVI 129
Query: 128 RIS 130
++
Sbjct: 130 EVA 132
>gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length = 336
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM
Sbjct: 72 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 131
Query: 70 LQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ ++ Q +S +G+ + +G V+A++ + G + + ++
Sbjct: 132 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 191
Query: 123 ITTGIRISN 131
+ + I++
Sbjct: 192 MEDILGIAD 200
>gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii
PBi]
gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi]
Length = 147
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
SK LG+D FLKLLITQ+++QDPT PMK E ++Q+A FS +EQ M+ + ++L S
Sbjct: 31 SSKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMAQFSALEQMTNMSKSFEKLSSSL 90
Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK I G + G V I+ + + + V+ + +
Sbjct: 91 GIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGTIPQVMVNGNYYVYKNILSVG 144
>gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii
KSM-K16]
gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus
clausii KSM-K16]
Length = 144
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+++ + + + + + LGQDAFLKLLITQ+++QDP+ P++ E +AQLA FSQ+E
Sbjct: 3 QVDPSLWLSSSQNQQRQPNNALGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLE 62
Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAIT 115
Q ++NST++ + KS L S IGK++ + V ++ S +G +
Sbjct: 63 QLTKLNSTMEYMYYEQKSQQLMALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQ 122
Query: 116 VDNTE 120
+D+ +
Sbjct: 123 IDDDK 127
>gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
8271]
Length = 144
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS--- 68
+ S + K LG++ FL+LL+ Q+K+QDP PM ++ V+Q+A FS +EQ +
Sbjct: 18 SDTVTSTASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMTNVADAIV 77
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDNTEIPI 123
TL L + L Q S+ IGK GS +G VN+I++ + + VD+ + +
Sbjct: 78 TLTSLYSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRIQDN-VLQVQVDDQWVDL 136
Query: 124 TTGIRIS 130
+++S
Sbjct: 137 GNILQVS 143
>gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 169
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
TLG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + + L
Sbjct: 27 NNTLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE-------L 79
Query: 80 AQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+A + IG+ + ++ ++ G V++I+V + + V+ E+ +I
Sbjct: 80 IKAQNMIGRYVVATNPSDTSKTVEGRVDSIRVDGS-KIYLKVNGVEVTTENIKQI 133
>gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 150
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 12/122 (9%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
K + +D FLKL I Q+K+QDP EPM +E AQ + F+ +EQ + MNS+++E+L S L
Sbjct: 23 KSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSMEEML-SLQL 81
Query: 80 AQASSYIGKNITNA-----------DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
A SYIG +T + +G+V +I + + D +E I+ I
Sbjct: 82 GNAVSYIGFEVTYSHAYQDDQGNQLTEEKTGIVQSISHENGSVVLKMTDGSEADISRIIS 141
Query: 129 IS 130
++
Sbjct: 142 VA 143
>gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus
amyloliquefaciens FZB42]
gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42]
Length = 146
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN+T+ + +++ +
Sbjct: 27 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86
Query: 79 -LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
++IGKN+T +D + VN+++ S+ + + E+ +S
Sbjct: 87 PFTMYVNWIGKNVTFSDSDGKDQTSPVNSVKHSNGNYVLVLENGKEVSPWNVTAVS 142
>gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas
palustris BisB18]
gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
Length = 135
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
+G + FL+LLI Q+++QDPT P S+ ++Q A S +EQ++Q N L LL ++ L+QA
Sbjct: 25 IGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSVEQAIQTNLKLDALLSTSALSQA 84
Query: 83 SSYIGKNI--TNADG-SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IG+ T DG S +G + A+ + G A + ++ + GI IS
Sbjct: 85 EGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDNGVQVQLGPGITIS 135
>gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
Length = 221
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---T 69
+ +LGQ FL+L+ Q+KHQDP PM+ S + Q+A FS ++ +NS
Sbjct: 17 ATTSKDKSDSLGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQGIETLNSQVRA 76
Query: 70 LQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
Q L S+ L + ++ +G+++ + GS G V A S T + +
Sbjct: 77 FQSALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQFTVTDANGRTV 136
>gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676]
gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676]
Length = 190
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGLSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
MEQ M LQ + + L ++GK + N ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ VDN + + R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165
>gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228]
Length = 168
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ E + LGQDAF KLLITQ+++QDP PM+ E V+Q+A FS +E++ ++ S L
Sbjct: 24 ETERKSLEGNDGLGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKTEKLYSLL 83
Query: 71 QELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
++ L SN + S IGK IT + GVV +I+ + A + E+ I
Sbjct: 84 EDKLSSNQVINNSHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNGLEVDINY 143
Query: 126 GIRI 129
+I
Sbjct: 144 ITQI 147
>gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
49176]
gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
49176]
Length = 317
Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + LG+D+FLKLL Q+++QDP +P +E V+QLA +S +EQ +N+T+
Sbjct: 33 QNVKTADDLNKLGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIA 92
Query: 72 ELLKSNNLAQASSYIGKNI----TNADG---SISGVVNAIQVSSTGLTAITVDNTEIPIT 124
+QA IG+ + ++DG ++SG V+ + V + +++D P +
Sbjct: 93 N-------SQAYGLIGQEVVMAAKDSDGHETTVSGKVDFVSVKGN-KSYLSIDGNLYPAS 144
Query: 125 TGIRISN 131
+ N
Sbjct: 145 DLQSVIN 151
>gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
Length = 237
Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117
++ M ++ + A S +GK + D G SG V+ + G ++++
Sbjct: 75 TLSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133
Query: 118 NTEIPITTGIRIS 130
++ +S
Sbjct: 134 EKMYDYSSLYSVS 146
>gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia
stuttgartiensis]
Length = 137
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------- 73
+ D+FL L TQ+++QDP +P SE ++QLA F+ +EQ+ Q L +L
Sbjct: 11 SEITTDSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTAS 70
Query: 74 LKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
L+ + + AS +IGK IT +D G SGVV +++ G + +D + I+ I++
Sbjct: 71 LQLDQIGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQV 130
Query: 130 SN 131
+
Sbjct: 131 ES 132
>gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 147
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 87/122 (71%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + ++ K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+
Sbjct: 14 TTSTTNSAQQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTK 73
Query: 70 LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
L LL S++L QASSY+GK + +ADG++ G + +++V S G+ A T + +I + GI +
Sbjct: 74 LDTLLSSSSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILVQAGITV 133
Query: 130 SN 131
++
Sbjct: 134 AD 135
>gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 190
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
MEQ M LQ + + L ++GK + N ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ VDN + + R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165
>gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 180
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 13/135 (9%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N Q S + K L ++AFLKLL+T++K+QDP EP+K E ++Q+A FS +EQ +N
Sbjct: 16 NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75
Query: 68 STLQELLKSNN--------LAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAIT 115
S+ +L + N + Q+S+ +G+ + D S +G+++++ G+
Sbjct: 76 SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSVVFRE-GIPYYV 134
Query: 116 VDNTEIPITTGIRIS 130
+D+ EI + R+
Sbjct: 135 IDDKEITMNNISRLG 149
>gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
771]
Length = 134
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S + S L ++AFLKL I Q+K+QDP P + + Q+A FS MEQ + +N+++ +L+
Sbjct: 17 STNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQLMNLNTSITQLI 76
Query: 75 KSNNLAQASSYIGKN--ITNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
NL +A+S +G+ +T ADG+ ISG V +Q+ I +D I+ +I
Sbjct: 77 DLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQIRQN-ANKIVIDGESYDISQIAQIG 134
>gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 225
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L
Sbjct: 15 QAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74
Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L S+N ++ +GK + + +++ G V +P G
Sbjct: 75 DTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---TLPADAGE 124
Query: 128 RIS 130
++
Sbjct: 125 AVA 127
>gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly]
gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly]
Length = 146
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ M+ + + L +
Sbjct: 33 SNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENLSSILGVN 92
Query: 81 QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ + +GK + + I G V +++ I +D + +
Sbjct: 93 KDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYNNVLSVG 143
>gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
Length = 146
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ + LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ M+S +L
Sbjct: 32 TASQQLGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANML 91
Query: 78 NLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
N +A S +GKN+ D ++SGVV ++ + I V+ + +
Sbjct: 92 NSNEAVSLLGKNVELNAGDAAVSGVVESV--TRGAAPQIKVNGMLYSMDQINAV 143
>gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 190
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
MEQ M LQ + + L ++GK + N ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ VDN + + R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165
>gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus
donghaensis MPA1U2]
gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus
donghaensis MPA1U2]
Length = 143
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M I+T + +K + LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F
Sbjct: 1 MNISTATSGIATASASATKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQF 60
Query: 58 SQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLT 112
+ +EQ +N T+ + + S++LA + IG ++ GS G+V A+ + L
Sbjct: 61 TSLEQLTNLNKTMTQFVSNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELL 120
Query: 113 A-ITVDNTEIPITTGIRIS 130
A + +T++PI + I I
Sbjct: 121 AELEGSDTKVPIASIIHIE 139
>gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 135
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ +N + LG++ +L+LL+TQ+++QDP PM E +AQ+A FS +EQ
Sbjct: 9 NSYINTYTDGTKVTNPNSELGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT------NADGSISGVVNAIQVSSTGLTAITVD 117
+ +N++ N +A S +GK I+ + +I+G V+A++ + + V
Sbjct: 69 LNLNNSF-------NAVKAYSLLGKTISANIDSNGSSSTITGKVDAVKFDGSN-YYLEVQ 120
Query: 118 NTEIPITTGIRISN 131
+ + + + +S+
Sbjct: 121 GSNVSLDSVTSVSD 134
>gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 225
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L
Sbjct: 15 QPGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74
Query: 71 QELL---KSNNLAQASSYIGKNI 90
L S+N ++ +GK +
Sbjct: 75 DTLAVAQASSNQLGTAALVGKEV 97
>gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 190
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str.
A2012]
Length = 190
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAXQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1]
Length = 237
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117
++ M ++ + A S +GK + D G SG V+ + G ++++
Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133
Query: 118 NTEIPITTGIRIS 130
++ +S
Sbjct: 134 EKMYDYSSLYSVS 146
>gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
14579]
gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550]
gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus
thuringiensis BMB171]
gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC
14579]
gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550]
gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus
thuringiensis BMB171]
Length = 190
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3 INTEVNPTQQ----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S
Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86
Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
MEQ M LQ + + L ++GK + N ++G V ++++
Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146
Query: 113 AITVDNTEIPITTGIRISN 131
+ VDN + + R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165
>gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W]
gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W]
Length = 190
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + KHQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 NNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
Length = 230
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + L ++AFL+LL+TQ+++QDP P+ + E AQLA FS +EQ + +N TL
Sbjct: 18 STPSAPAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGINETL 77
Query: 71 QELLKSNNLAQ-------ASSYIGKNITNADGSIS 98
+ A+ +GK I ++
Sbjct: 78 AAQSDAYAALAQGIHNSVAAGLVGKVIEAEGDRLT 112
>gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus
amyloliquefaciens TA208]
gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3]
Length = 143
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+ + + S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N+
Sbjct: 14 SSTKSTAAVNSSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNT 73
Query: 69 TLQELLKSNN-LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
T+ + +++ + ++IGK++T +D + VN+++ S+ + + E+
Sbjct: 74 TMTKYVENQDPFTMYVNWIGKSVTFSDSDGKDQTSPVNSVKHSNGNYMLVLENGKEVSPW 133
Query: 125 TGIRIS 130
+S
Sbjct: 134 NVTAVS 139
>gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0488]
gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. CDC 684]
gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Vollum]
gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0488]
gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. CDC 684]
Length = 198
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
Length = 263
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L
Sbjct: 27 QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86
Query: 71 QELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAIT 115
+ + S +GK++ A G V + + TG+
Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134
>gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Ames]
gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Sterne]
gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0442]
gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0193]
gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0465]
gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0389]
gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0174]
gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis
Tsiankovskii-I]
gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB108]
gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus
AH820]
gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0248]
gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis
str. A1055]
gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Western North America USA6153]
gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Kruger B]
gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis
str. Australia 94]
gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI]
gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. Ames]
gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. Sterne]
gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0193]
gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0442]
gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0389]
gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0465]
gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0174]
gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis
Tsiankovskii-I]
gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB108]
gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus
AH820]
gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis
str. A0248]
gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis
str. CI]
Length = 190
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629]
Length = 237
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 5 TEVNPTQQ--EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T PTQ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E
Sbjct: 15 TNTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEA 74
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVD 117
++ M ++ + A S +GK + D G SG V+ + G ++++
Sbjct: 75 TLSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVT-YKDGKIQLSIN 133
Query: 118 NTEIPITTGIRIS 130
++ +S
Sbjct: 134 EKMYDYSSLYSVS 146
>gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17025]
Length = 225
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ +++K LGQ+ FLKLL TQ+++QDP +PM+ E +AQ+A FS + Q+N TL
Sbjct: 18 KTATQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNGTLS 77
Query: 72 EL---LKSNNLAQASSYIGKNI 90
+ L S A A+S IG+++
Sbjct: 78 GIGEGLGSFRTATAASLIGRSV 99
>gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
Length = 225
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ + L
Sbjct: 15 QAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQLGALGDKL 74
Query: 71 QELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L S+N ++ +GK + + +++ G V +P G
Sbjct: 75 DTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---TLPAEAGE 124
Query: 128 RIS 130
++
Sbjct: 125 AVA 127
>gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus
E33L]
gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L]
gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 190
Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
Length = 175
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
N T S + +K +D FLKLL+ Q+K+QDP++P ++ +AQ A FS +E +
Sbjct: 30 NANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQE 89
Query: 66 MNSTLQELLKSNNLAQASSYIGKNI--TNADGSI-SGVVNAIQVS------STGLTAITV 116
+ ++ +L + N QAS+ IG+ + T DG+ SGVV + + + G + V
Sbjct: 90 VAASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVVKSASFTQGSAGGTNGEPVLNV 149
Query: 117 DNTEIPITTGIRIS 130
D T + ++ I
Sbjct: 150 DGTSVVLSRVSGIG 163
>gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus
flavithermus WK1]
gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1]
Length = 163
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+Q + K +LG+D FLK+LI Q++HQDP PM+ E ++Q+A FS +EQ V M++ L
Sbjct: 21 RQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSSLEQMVNMSNML 80
Query: 71 QELLKSN------------------------NLAQASSYIGKNITNADGSISGVVNAIQV 106
+ +++ +LAQ S +IGK +T + SGVV A+
Sbjct: 81 SKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTWDEQ--SGVVRAVVQ 138
Query: 107 SSTGLTAITVDNTEIPITTGIRIS 130
T + + + ++S
Sbjct: 139 KGTDIWLELEQGETVLASRVTKVS 162
>gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
Length = 285
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 15/112 (13%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
E ++QE + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ
Sbjct: 18 ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77
Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSST 109
MN ++ + +QA + IGK IT S+ G V ++++
Sbjct: 78 MNGSMTK-------SQAFNLIGKVITATTTDDKTLEVNSVQGTVTSVKMKEG 122
>gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
3_1_syn3]
gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
3_1_syn3]
Length = 282
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 64/101 (63%), Gaps = 6/101 (5%)
Query: 3 INTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
I +N T EF+ + SK+ + +D+F+ LL+TQ K+QDP PM+ E +AQLA FS
Sbjct: 4 ITQALNQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSS 63
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+EQ + +N++++ L + + A+SYIGKN++ + +I
Sbjct: 64 LEQLMNLNTSMEGLTDATNNQQMINATSYIGKNVSVSGNAI 104
>gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella
silvestris BL2]
gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2]
Length = 135
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Query: 2 EINTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N+ N T + + + T+ + FL+LLIT++K+QDPT P ++ ++QLA FS
Sbjct: 5 NVNSVANATGTSANASTSAATSATVDYNQFLQLLITELKNQDPTSPTDPTQYMSQLASFS 64
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVD 117
+EQ V+ NS L LL QA + IGK T+ADG ISGV+ ++ S+ G +TA +
Sbjct: 65 SVEQQVKTNSALDALL----ATQAGALIGKTATSADGKISGVIASVTTSAGGDVTATLKN 120
Query: 118 NTEIPITTGIRIS 130
+ I + +G+ IS
Sbjct: 121 GSAITLGSGVTIS 133
>gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 263
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
L + AFL LL+ Q+ HQDP PM E VAQLA F+ +EQ +++ +
Sbjct: 15 NNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNISTGI 74
Query: 71 QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+L S ++ A YIGK +T + IS Q STG T +V + + TT
Sbjct: 75 TDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYFTTQE 129
Query: 128 RISN 131
++SN
Sbjct: 130 QVSN 133
>gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas
maltophilia R551-3]
gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia
R551-3]
Length = 227
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ + + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++
Sbjct: 12 DVYSALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71
Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKN--------ITNADGSISGVVNA 103
+N T QE + S+ + + ++ +G + +G++ G V A
Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAA 124
>gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
Length = 128
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
INT+ T + K + L +D FLKLL+TQ+++QDP EPM +E +AQLA FS +EQ
Sbjct: 4 INTDYYYTANQEQKLGTTN-LDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSLEQ 62
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNT- 119
+N + L A S IGK + G + I + I +
Sbjct: 63 MQNLNIQMASL-------SAISTIGKTAKAVVEQNEVEGTIKGIAFDRGSVNLIISNEDS 115
Query: 120 --EIPITTGIRI 129
++PI I
Sbjct: 116 EVKVPIENVAEI 127
>gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 190
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T + K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSANTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus
thuringiensis str. Al Hakam]
gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB102]
gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al
Hakam]
gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus
03BB102]
gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
Length = 190
Score = 93.5 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ
Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91
Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
M LQ + S L ++GK ++N ++G V ++++ + VD
Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151
Query: 118 NTEIPITTGIRISN 131
N + + R+S+
Sbjct: 152 NQVVSLRFIERVSD 165
>gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma
proteobacterium HTCC2207]
gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma
proteobacterium HTCC2207]
Length = 228
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++E + + + LGQDAFL L Q+++Q+P +PM V+QLA FS +E M +L
Sbjct: 18 EKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIKGMQGSL 77
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISG 99
+ ++ + + ++ +GK + A G+ +G
Sbjct: 78 DNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG 109
>gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
Length = 143
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 1 MEINT-EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M +N+ + Q + L QD FLKLL Q+++Q+P +PM +AQ+A FS
Sbjct: 1 MYVNSINTMSSAQASTVINKSAKLRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSS 60
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112
+EQ M++ L ++AQA + IGK + ISG V++++ S G
Sbjct: 61 LEQMQNMSANL-------SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKF-SNGQA 112
Query: 113 AITVDNTEIPITTGIRISN 131
+TV ++P+ + +
Sbjct: 113 ILTVGAVDVPLENVTEVRD 131
>gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
Length = 223
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Query: 1 MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M I++ + P + +L + F+KL ITQ+++QDP +PM + E +QLA
Sbjct: 1 MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60
Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
FS ME +++M+ +++LL KS N Q IGKNI A IS
Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106
>gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
Length = 223
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M I++ + P +K +L + F+KL ITQ+++QDP EPM + E +QLA
Sbjct: 1 MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60
Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
FS ME +++M+ +++LL KS N Q IGKNI A IS
Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106
>gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
Length = 247
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ SK +LGQ FL LL+ Q+ HQDP PM+ ++ +QLA FS +EQ ++N +Q
Sbjct: 20 ASNTPTSKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQS 79
Query: 73 L---LKSNNLAQASSYIGKNITNADGSIS 98
L + ++L A+SYIGK+I IS
Sbjct: 80 LNTVMGKSDLLSAASYIGKDIKAEGYKIS 108
>gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter
desulfuricans SSM1]
gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter
desulfuricans SSM1]
Length = 221
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + + + KK L +D FL LL+TQ+K+QDP P+ SE +AQ FS +EQ
Sbjct: 7 NINTVTSISNINNREPKKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLEQL 66
Query: 64 VQMNSTLQELL-----KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
+ ++ +L+ + NL A S+I K I S + + D
Sbjct: 67 INISEKFDKLIDNEESSNLNLFSAVSFIDKTINFYGNDFS--------ADENGALLRFDI 118
Query: 119 TEIPITTGIRISN 131
+ P TT I I N
Sbjct: 119 SGTPATTNIEIYN 131
>gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782]
gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782]
Length = 286
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+Q + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ MN
Sbjct: 20 TKNKQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMN 79
Query: 68 STLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSST 109
++ + +QA + IGK IT S+ G V ++++
Sbjct: 80 GSMTK-------SQAFTLIGKVITATTTDDKTLEVNSVQGTVTSVKMKDG 122
>gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas
maltophilia K279a]
gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas
maltophilia K279a]
Length = 227
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ T + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++
Sbjct: 12 DVYTALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71
Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKN--------ITNADGSISGVVNA 103
+N T QE + S+ + + ++ +G + +G++ G V A
Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAA 124
>gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13]
Length = 217
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I++++ + S +G+D FL+LLI Q+++QDP PM+ E +AQ+A FS +EQ
Sbjct: 5 ISSDLYIQNRPVETSNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQ 64
Query: 63 SVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI----------SGVVNAIQVSST 109
+N +++ + + N S +G +T + +G V +I +
Sbjct: 65 MANLNKSMEGFIDTQNKMNVLSLQQYLGSELTWQHTYMVEDEPFVEMKNGTVASISMQDG 124
Query: 110 GLTAITVDNTEIPITTGIRI 129
I D +EI + ++
Sbjct: 125 KARLIMDDGSEITVEQITKV 144
>gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2]
gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2]
Length = 177
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E
Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107
Q + +++ L L +L AS IGK + T A SG+V++I +
Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEPGKKDSITGETGAGTVKSGIVDSIVIR 129
Query: 108 STGLTAITVDNTEIPITTGIRIS 130
G+ + E+ + +S
Sbjct: 130 -DGVQYAKMGAAEVALKDVTSVS 151
>gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
Length = 182
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ K K LG+DAFL+LL+TQ+K+QDP +P + + Q+A F+ +EQ +
Sbjct: 12 NYSTSNVKAAGKDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLM 71
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGV-------VNAIQVSSTGLTAITVD 117
M+ L L + NL ASS IGK ++ + +G VN+I L A D
Sbjct: 72 NMSDQLSLL--NQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFAD 129
Query: 118 NTEIPITTGIRISN 131
T I ++ + +S+
Sbjct: 130 ETMIKLSDVVTVSD 143
>gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110]
gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110]
Length = 133
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
++ + + +LG + FLK+L+TQ+ +QDP +PM E +AQ+A F+ +EQ+ Q+
Sbjct: 3 IDAISGSTATNLQASSLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQL 62
Query: 67 NSTLQELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAIT 115
N+ ++ L+ + Q+ IGK + G+++G V+A+ +S
Sbjct: 63 NNKIETLITNQAALQSVGLIGKTVDVNTPTGAVTGTVSALSLSGDAPLLTV 113
>gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
Length = 220
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 6/120 (5%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ +++ T + KK L ++AFL+LL+T++++QDPT+PM+ + VAQL+ S
Sbjct: 5 VSMDSIYQSTYDAKKDREIKKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSST 64
Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAI 114
EQ M+ +QE++ S N QA+S IGK + D +I SGV + + +
Sbjct: 65 EQITNMSQAIQEMVNSQMSLNKLQAASLIGKTVVVNDNTIDLQSGVAEGLNYGLDNGSQV 124
>gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium
HTCC2083]
gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium
HTCC2083]
Length = 230
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+++ + + +K+ LGQD FLKL+ Q+++QDP PM + +AQ+A FS +
Sbjct: 16 SKLGISTTDAKPEDAKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVN 102
M TL + L + + + +G ++ G + GV++
Sbjct: 76 DMGKTLNTIADQLGQFRVGSSVNMLGHSVLLPGNIARADDKGEVHGVLD 124
>gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
Length = 146
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
L + AFL LL+ Q+K+QDP PM+ E +AQLA + +EQ Q+N T+ + + L Q
Sbjct: 24 QLDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQLNETVAAMAQHAALGQ 83
Query: 82 ASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ Y+G+ ++ D + ++G V + I + + I
Sbjct: 84 VAGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAVLELSGGQRIDVRDVVSI 135
>gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
Length = 225
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
LGQ FL L+ Q+++QDP PM+ E +AQ+A FS + ++N+TL ++ +
Sbjct: 27 TGNGDLGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQI 86
Query: 75 KSNNLAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITV 116
N +A ASS +G+ + SG V+ + +A+TV
Sbjct: 87 GGNRIATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAASAVTV 132
>gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium
BAC17H8]
Length = 231
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++E + SK TLGQ FLKL+ TQ+++QDP PM+ +E +AQ+A FS + +M + L
Sbjct: 23 KKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEMGTEL 82
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118
+ + L +A A++ +G ++ + +G I G++ S++G+T +T N
Sbjct: 83 KAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIE--LPSASGITNLTFSN 139
>gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum]
Length = 278
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
KK LG + ++ ++I Q+++QDP PM + +QLA FSQ++Q V MN ++ +
Sbjct: 27 PPPQKKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMAN 86
Query: 76 S---NNLAQASSYIGKNI 90
+ Q ++G+ +
Sbjct: 87 QGRETDALQMVGFLGREV 104
>gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681]
gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681]
Length = 177
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 17/143 (11%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E
Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107
Q + +++ L L +L AS IGK + T A SG+V++I +
Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEAGKKDSITGETGAGAVKSGIVDSIVIR 129
Query: 108 STGLTAITVDNTEIPITTGIRIS 130
G+ + E+ + +S
Sbjct: 130 -DGVQYAKMGAAEVALKDVTSVS 151
>gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
Length = 223
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS- 76
LGQ FLKL+ TQ+++QDP EPM+ E + Q+A FS + +++ + ++L +S
Sbjct: 22 GPADRLGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSFEKLAQSM 81
Query: 77 --NNLAQASSYIGKNI--------TNADGSISGVVN 102
+ QA+S +GK++ DG + G V
Sbjct: 82 GQSQTLQAASLVGKDVLVPTDFSELGTDGMVRGAVE 117
>gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1]
gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1]
Length = 155
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + K TL Q+ FLKLL Q + QDP PM+ +E +AQ+A F+ ++QS + + +
Sbjct: 21 SGTNTPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQM 80
Query: 71 QELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
++ + A A+SYIG+ +T AD + +GVV+ ++++ G + V + ++
Sbjct: 81 KQFSTMQDAATANSYIGRQVTFADENGATATGVVSGVEIT-DGAPRLVVGDLTYALSAV 138
>gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1]
gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131]
gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1]
gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131]
Length = 223
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116
+ L + A A+S IGK++ + +G V + A+ V
Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127
>gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029]
gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029]
Length = 223
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116
+ L + A A+S IGK++ + +G V + A+ V
Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127
>gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium HdN1]
gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium HdN1]
Length = 237
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST- 69
+ S KS +D F++L++ Q+KHQ+P +P +E VAQLA FS +E +N +
Sbjct: 29 DNKASPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSV 88
Query: 70 --LQELLKSNNLAQASSYIGKNITNADGSIS--------GVVNAIQVSSTGLTAITVDNT 119
+ + +S+ QA++ +G+ + S++ GV+NA Q +S + T+ ++
Sbjct: 89 KDITSMYRSSQTLQATALVGREVLVDGDSVAFDGKNAALGVINAGQAASNAVM--TIKDS 146
Query: 120 EIPITTGIRISN 131
+ + + I +
Sbjct: 147 KGAVVNSMTIGD 158
>gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 254
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM
Sbjct: 56 KTDKAAQTKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTE 115
Query: 69 TLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVDNTEI 121
++ ++ AQ ++ +GK + +++ G ++A++ + G + ++
Sbjct: 116 ASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIGKEKV 175
Query: 122 PITTGIRISN 131
++ + I++
Sbjct: 176 EMSDILGIAD 185
>gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
Length = 262
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E +N+T+ + L+S+
Sbjct: 28 NELGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGLENLNTTVDSMSDGLRSS 87
Query: 78 NLAQASSYIGKNITNADGSI 97
QASS +G+++ +
Sbjct: 88 QALQASSLVGQSVIVPNQEY 107
>gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14]
gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14]
Length = 227
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++
Sbjct: 12 DVYAALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71
Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110
+N T QE + S+ + + ++ +G + +GS+ G V A
Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAAPSAGIIT 131
Query: 111 LTAITVDNTEIPITTGI 127
+ + T++ +
Sbjct: 132 VDITDANGTKVTSLSVE 148
>gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046]
Length = 231
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N + + + LG+DAFLK+LITQ+++QDPT PM E ++Q+A FS +EQ M
Sbjct: 13 ANNPNFKVTDKQDNGALGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNM 72
Query: 67 NSTLQE---LLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTG 110
++ + + L ++++GK + + G + ++ +
Sbjct: 73 TKAMENLLQSQQQSQLMSYTTFVGKEVKWHEITDKVDADNKPIYNEGIGTIQELKFVNGE 132
Query: 111 LTAITVDNTEIPITTGIRI 129
+ D EI I
Sbjct: 133 AVFVLADGKEIKPGNISSI 151
>gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
Length = 225
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ ++ + + K LG++ F+ L+I Q+ +Q P +P + VAQLA FS +E
Sbjct: 11 SDALSQYALQQKSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLAQFSSVEGI 70
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
+NST+ + +S QAS+ +G+++ +ADGSI+GVV
Sbjct: 71 QSLNSTVDTMASQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVVE 120
>gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1]
gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1]
Length = 215
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 14/134 (10%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ + ++ S KTL +DAFLK+LI Q+++QDPT+PM ++ V+Q+A FS +
Sbjct: 7 IDPSLLLSNQNTATSTRTGSKTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSL 66
Query: 61 EQSVQMNSTLQELLKSNNLAQ---ASSYIGKNI------TNADGSI-----SGVVNAIQV 106
EQ + + + L+K + +Q + YIG+ + T DG+ +G + I
Sbjct: 67 EQMTNLKNDIDNLIKLSQQSQQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISF 126
Query: 107 SSTGLTAITVDNTE 120
T+D+
Sbjct: 127 GDDNAVTFTLDDGT 140
>gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides]
gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
Length = 223
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Q+NSTL
Sbjct: 16 QTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTVSGIEQLNSTLT 75
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAITV 116
+ L + A A+S IGK++ + +G V + A+ V
Sbjct: 76 GIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEALVV 127
>gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
Length = 250
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
+ ++ + +L QDAFL +L+ Q+ HQDP PM+ +E +QLA FS +EQ +N ST
Sbjct: 21 SNTPTEHETSLDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNINDGIST 80
Query: 70 LQELLKSNNLAQASSYIGKNITNADGSIS 98
L E + +++ A S+IGK + +S
Sbjct: 81 LNETMSQSDILTAVSFIGKEVKAEGYKVS 109
>gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct]
Length = 238
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++
Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87
Query: 71 QELL---KSNNLAQASSYIGKNITNA 93
+ +L +S+ QASS +G+ + A
Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113
>gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
51333]
gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
51333]
Length = 254
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ +QM
Sbjct: 56 KTDKAAETKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMIQMTE 115
Query: 69 TLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVDNTEI 121
++ ++ AQ ++ +GK + +++ G ++A++ + G + ++
Sbjct: 116 ASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIGKEKV 175
Query: 122 PITTGIRISN 131
++ + I++
Sbjct: 176 EMSDILGIAD 185
>gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas
mendocina ymp]
gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
Length = 221
Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
++ K LG++ FL LL+ Q+ +Q+P EP E +AQLA FS +E ++N +++ +L
Sbjct: 19 NTRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGIEKLNKSMESMLS 78
Query: 75 --KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+S+ QASS +G+ + D S S +A+ S+G + V ++ + T
Sbjct: 79 SYQSSQALQASSLVGRKVIVPTERAVVDTSESFKASAVLPVSSGNVYVNVYDSAGSVVTR 138
Query: 127 IRIS 130
I +
Sbjct: 139 INLG 142
>gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus
SJ]
Length = 281
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q+F +K LG+D FLKLL Q+ +QDP +PM + A LA FSQ+EQ MN+ +
Sbjct: 43 DQKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTKM 102
Query: 71 QELLKSN---NLAQASSYIGKNITNADGSI 97
+ K++ N A+S+IGK I + S+
Sbjct: 103 DGMQKNDTTENKFMAASFIGKEIMSKGTSV 132
>gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 236
Score = 90.8 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
I + S KSK L Q FL LL+ Q++HQDP PM+ + AQLA FS +
Sbjct: 6 NITGSSSAIDPYASTPKSKSGALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSL 65
Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQ 105
EQ ++N ++ L S ++ A S+IGK+I ++S +I
Sbjct: 66 EQLNKINEGIEGLNSSAGRQDMLGAVSFIGKDIRAFGNTVSKEGTSIT 113
>gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
Length = 222
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + Q + S LG+ FL L++ Q+K+QDP P A+E AQLA FS +EQ
Sbjct: 9 NAASSNAQLSSALSSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQL 68
Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQV 106
+N L+ + ++ A + IG ++ A A+Q
Sbjct: 69 FNVNDNLESMGNTSAEVQRLSALALIGTDVVTASSEFEFSGGAVQF 114
>gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 229
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ T+ + KS+ QASS +G+++ GS S
Sbjct: 73 MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111
>gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
Length = 270
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L +DAF+ LL+TQ+K+QDP +P+ SE +AQLA F+ +EQ + + Q+ L +
Sbjct: 23 KEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQLANG 82
Query: 78 NLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ + Y+ K+ T + G V+ ++VS + + + E+ + ++ +
Sbjct: 83 MIGKYVEYLYKDSETGTSEYLVGKVDYVKVSGD-TPVLGIGDVEVNLEDVYQVYD 136
>gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
Length = 218
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M +N+ ++ + +KK L ++AFLKLLITQ+K QDP EPMK + +AQ++ S +
Sbjct: 3 MNVNS-MSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSL 61
Query: 61 EQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
EQ + M+ ++Q + + QA S IGK I+ G+ V
Sbjct: 62 EQVMNMSKSVQSFVDTAAQLYRTQAVSMIGKTAVVKTNVIN--------VENGVPESKVF 113
Query: 118 NTEIPITTGIRISN 131
N + P I+I +
Sbjct: 114 NLDSPANIVIKIFD 127
>gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PA7]
gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa PA7]
Length = 227
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++
Sbjct: 18 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 77
Query: 71 QELL---KSNNLAQASSYIGKNITNA 93
+ +L +S+ QASS +G+ + A
Sbjct: 78 ESILSNYQSSQALQASSLVGRKVIVA 103
>gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
Length = 231
Score = 90.4 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ + T+ + + + K +LGQD FLKL+ TQ+ HQDPT+PM+ + + Q+A F +
Sbjct: 9 DYSYLTATTKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVS 68
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTG 110
+ + + + S+ QA+S +G+ ++ A G I+G +N + +
Sbjct: 69 GIQDLQKSFGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNINLTASAPSV 128
Query: 111 LTAITV 116
A+T
Sbjct: 129 KVAVTD 134
>gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 137
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 2 EINTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
++ T N T QE + + + ++AFLKLL Q+K+QDP PM +E V QLA+FS
Sbjct: 3 DVTTIFNNPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFS 62
Query: 59 QMEQSVQMNSTLQELLKSNNLAQA----SSYIGKNITNADGS 96
+EQ + +N+TL++L S + A S+ IGK I DG+
Sbjct: 63 ALEQVININNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT 104
>gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum
rubarum]
Length = 276
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + +
Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85
Query: 76 SN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
N ++G+ +T NA +++ +G ++T T + +RI +
Sbjct: 86 DGADANKMMMVGFLGQRVTMKG-------NAFRLAPSGNVSLTYRQTGASQSGHLRIFD 137
>gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PAO1]
gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2]
gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa LESB58]
gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa C3719]
gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 2192]
gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 39016]
gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa PAO1]
gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa C3719]
gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 2192]
gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa LESB58]
gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa 39016]
Length = 237
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++
Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87
Query: 71 QELL---KSNNLAQASSYIGKNITNA 93
+ +L +S+ QASS +G+ + A
Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113
>gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine
bacterium MedDCM-OCT-S09-C247]
Length = 230
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T+Q ++ +K TLGQ FLKL+ TQ+++QDP PM + +AQ+A FS + ++N++
Sbjct: 20 TRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEVNNS 79
Query: 70 LQEL---LKSNNLAQASSYIGKNITNADG 95
+ +L +A AS+ +G ++
Sbjct: 80 IGQLVDEFDQARIATASNLLGHSVLVPGN 108
>gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
Length = 145
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T K KS + LG D FL+L+IT++ +QDP PM ++ V Q+ ++ +
Sbjct: 9 STSGAGATTNSDKPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASN 68
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGL------TAI 114
+++ TL +L +L AS IG+ +T D ++ G+V+ + + +
Sbjct: 69 DKLSRTLDSVLTGQSLTTASGLIGREVTALDLNNENVEGIVDRVSIEVDEDDATKRTYKV 128
Query: 115 TVDNTEIPITTGIRI 129
+ + EI + I
Sbjct: 129 HIGDKEIDLKNIREI 143
>gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus
denitrificans ATCC 25259]
gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus
denitrificans ATCC 25259]
Length = 221
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ SKS + QD FL LL+ Q+K+QDP P+ +E +Q+A S +E MN +L
Sbjct: 16 AEAAKTSKSGSSDTQDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSL 75
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97
+ L + ++ ++QA++ IG + ++
Sbjct: 76 EALASSMGASQMSQAANLIGHAVLVPGNAV 105
>gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus
degradans 2-40]
gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40]
Length = 238
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N+
Sbjct: 18 AKKNPTEPQSNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLNNNF 77
Query: 71 QELLKS---NNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVDNT 119
S N QAS+ +G+++T A G +S V+ S L I+ +
Sbjct: 78 DSFANSFVANQALQASTLVGRSVTVPSDRTELKAGGVVSASVDVPSSSGDILVNISTEGG 137
Query: 120 EI 121
+
Sbjct: 138 SL 139
>gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium
profundum 3TCK]
gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium
profundum 3TCK]
Length = 238
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q+ SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN
Sbjct: 27 QETQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
L + S+ QASS +G++ + NA+G I+G+V Q + I
Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMVKLPQALDNMMVRI 141
>gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
Length = 226
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++I E+ T+ K + LG + FLKL+ TQ+ HQDP EPM S + Q+A F +
Sbjct: 9 LDIYKELGLTRPPDKKPQ-NTELGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTV 67
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
+ ++ +EL ++SN QAS +G+++ A+GS+ G V
Sbjct: 68 SGIQDLQNSFKELSGSMQSNQALQASGLVGRSVLVPSEFGALEAEGSLRGAVK 120
>gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas
aeruginosa PAb1]
gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 237
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N ++
Sbjct: 28 TETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLNKSM 87
Query: 71 QELL---KSNNLAQASSYIGKNITNA 93
+ +L +S+ QASS +G+ + A
Sbjct: 88 ESILSNYQSSQALQASSLVGRKVIVA 113
>gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893]
gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893]
Length = 224
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 12/121 (9%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ + ++ + + ++ LG++ F++L+I Q+K+Q+P EP E ++QLA FS +E
Sbjct: 8 DASDVLSKFRLQQEQTAKGSELGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLE 67
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTG 110
+ ++ ++ ++ +S QAS+ +G+ + ADG ISG V ++ +++G
Sbjct: 68 EMQSLSGSVDDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISGNV-SVPATTSG 126
Query: 111 L 111
L
Sbjct: 127 L 127
>gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
Length = 223
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+
Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74
Query: 69 TLQELLKSNNLAQ---ASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLT 112
+ S N Q ++ +G N+ +A GS GVV A + T
Sbjct: 75 KVGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAATSAGFVNFEITDAN 134
Query: 113 AITVDNTEIPITTGIRIS 130
V +P + +S
Sbjct: 135 GTFVKQLSVPASAAGEVS 152
>gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
Length = 237
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN+ VN + S + QD FLKLL+ QI +QDP PM ++ +Q+A + +
Sbjct: 10 INSLVNKGTTTTTSSSTDSAEMQDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTG 69
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+N T++ L S + Q ++ +G+ + AD ++S
Sbjct: 70 IENLNQTVKNLGNQFTSMQVLQGTALVGREVMVADTTLS 108
>gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas
arsenicoxydans]
gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas
arsenicoxydans]
Length = 225
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
++ + KS QD FL LL+TQ+K+QDP P+ ++ +QLA S + ++
Sbjct: 16 LDQMNGTSAAKKSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKL 75
Query: 67 NSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
N TL+ ++ +SN QA++ IG + +IS
Sbjct: 76 NGTLESMMGSYQSNQALQAANMIGHGVLAPGSNIS 110
>gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
Length = 136
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+ T+G + FL++ +TQ+ QDP EP+ E +AQLA FS +E + + N ++ LL +
Sbjct: 17 KQNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQS 76
Query: 79 LAQASSYIGKNITNAD--GSISGVVNAIQVSSTG--LTAITVDNTEIPITTGIRIS 130
+AQ IGK + D G G V+ I ++ +T + D T I + RIS
Sbjct: 77 VAQTVGLIGKTVQVNDDQGFAVGKVSTITFNNGKPEITLVQEDGTPIVGISPSRIS 132
>gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
japonicus Ueda107]
gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
japonicus Ueda107]
Length = 231
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ ++ LGQ AFL+L+I Q+ +Q+P P +E VAQLA FS +E ++N +
Sbjct: 17 TKRQETKRNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNKSF 76
Query: 71 QELLKSNNLAQASSYIGKNITNADGSIS 98
+ SNN QASS +G++++ +
Sbjct: 77 NSFM-SNNALQASSLVGRSVSVESDKST 103
>gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.]
Length = 113
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
+G+D FL LL+TQ+K+QDP PM+ E AQLA FS +EQ MN+TL + S
Sbjct: 1 MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
YIGKNI +D +G V + G+ + V +I + I+
Sbjct: 61 DNLLDYIGKNIKTSDDE-TGEVTGVT-YQNGIGYLMVGENKILPDNVVEIT 109
>gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
Length = 144
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83
FLKLL+ Q+ HQDP P +S +A+ A F+ ++ MN + L + A
Sbjct: 32 DPQTFLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQTMNTMNQLMTNLYHDMQTSSAV 91
Query: 84 SYIGKNI--TNADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ IGK + T +DG+ ++GVV A S G + + +T +P++ ++
Sbjct: 92 ALIGKTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGSTTVPLSAITEVT 140
>gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp.
Group II '5-way CG']
Length = 276
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + +
Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85
Query: 76 SN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
N ++G+ +T NA ++ +G ++T + +RI +
Sbjct: 86 DGADANKMMMVGFLGQRVTMKG-------NAFRLDPSGNVSLTYRQAGASQSGHLRIFD 137
>gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
Length = 245
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+LGQDAFL+LL+TQ+++QDP PM + VA+LA FS +EQ ++N+ + +L N
Sbjct: 22 GAASLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEINTGIDKLADLNT 81
Query: 79 LAQ---ASSYIGKNITNADGSIS---GVVNAIQVS 107
+Q A ++IGK I ++S G + +
Sbjct: 82 QSQVMGAVNFIGKTIEANGEAVSLTKGKATPVTFT 116
>gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium
profundum SS9]
gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium
profundum SS9]
Length = 238
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN
Sbjct: 27 QDTQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
L + S+ QASS +G++ + A+G I+G+V Q + I
Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMVKLPQALDNMMVRI 141
>gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
13965]
gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
13965]
Length = 154
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
S L DAF +LL Q+++QDP +PM+ + VAQLA +Q+E++ + + L L
Sbjct: 27 SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85
Query: 75 KSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
A +G+ + T A G+ +G V +++ + +D + + +
Sbjct: 86 ------SALPLLGRTVEITTAQGTRTGTVTGVRMDPA-APGLMIDGRPVAWADVLDL 135
>gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
Length = 142
Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ ++ K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ
Sbjct: 6 MSDLYLSNRETQVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQ 65
Query: 63 SVQMNSTLQELLKSNNLA---QASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITV 116
M+++L L + + + S IGK D GV++ V + ++
Sbjct: 66 MTNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVISTASVKNNEVSFRIN 125
Query: 117 DN--TEIPITTGIRISN 131
D T + + + +S+
Sbjct: 126 DENHTVLSLNDILEVSS 142
>gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
Length = 224
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
++ Q + + K LG++ F++L++ Q+K+Q+P +P E ++QLA FS +E+ ++
Sbjct: 13 LSQYQLKQQSASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEMQKL 72
Query: 67 NSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAIT 115
+ + ++ +S QAS+ +GK + A G ++G V+ + S+ G+
Sbjct: 73 SGNVDSVIGEFRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVD-VPASTGGVQVSI 131
Query: 116 VDNT 119
++ +
Sbjct: 132 LNGS 135
>gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 222
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ KK L +D FL L+ITQ+K+QDP PM +E +AQ S +EQ + + +++
Sbjct: 17 NVKPREPKKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSLEQLINIAKLMEK 76
Query: 73 LLKS---NNLAQASSYIGKNITNADGSIS 98
+ L +S+IGKN++ S S
Sbjct: 77 QNAQSTESQLLSGASFIGKNVSYNGNSFS 105
>gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola
ATCC 35405]
gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC
33520]
gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema
denticola]
gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola
ATCC 35405]
gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402]
Length = 169
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ MN
Sbjct: 44 NKQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNK 103
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + + A + +GK + GS +SG ++A + + V+ +
Sbjct: 104 NFAALNELMTGSSAVNAVGKKVDLDLGSSQVSGYISA--ATRGINPEVMVNGNWYNWSAV 161
Query: 127 IRI 129
+
Sbjct: 162 KTV 164
>gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 140
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I E++ T E ++S+ LGQ+ F+KL +T++ QDP EP+ E +AQ+A F+ +EQ
Sbjct: 6 IGNELSSTTSELAQSR----LGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQ 61
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNT 119
+ N L+ N +Q+ +G+ + G+ G V AI SSTG ++V T
Sbjct: 62 TRITNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTG-PVLSVKRT 120
Query: 120 EIPITTGIRIS 130
+ + T +R+S
Sbjct: 121 DGTVLTDVRLS 131
>gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas
flueggei ATCC 43531]
gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas
flueggei ATCC 43531]
Length = 168
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 21/141 (14%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + SK LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L
Sbjct: 21 NQAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGL 80
Query: 71 QELLK-------SNNLAQASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLT 112
+++ K S + Q SS IG+ I DG+++ G V + ++ +
Sbjct: 81 EKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGVSITDGAPS 140
Query: 113 AITVDNT---EIPITTGIRIS 130
I N ++ I+ +R+
Sbjct: 141 IIADVNGQSHKVQISEVVRVG 161
>gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
Length = 139
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
L +AF+KLLITQ+++QDP+ PM E ++Q++ + +++ L+ L S L
Sbjct: 25 NALDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLN 84
Query: 81 QASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+++++GK I T +SGVV+ + V + + V + E+P+T ++N
Sbjct: 85 SSTAFLGKEIKGTTANGTEVSGVVDRVYVKDK-ASFLVVGDKEVPLTNVTDVTN 137
>gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida
F1]
gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1]
Length = 234
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ + +LG+DAFL+LL+TQ++HQ+P +P SE VAQLA FS +E +N
Sbjct: 23 TKKTTDTASKTGNDSLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGITSLN 82
Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96
++ + + S+ QASS +G+++ +
Sbjct: 83 DSVSSITSAMASSQALQASSLVGRSVVVQNDK 114
>gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio
bacteriovorus HD100]
gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio
bacteriovorus HD100]
Length = 334
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
++ +L +DAF KL++TQ+K+QDPT P+K+ E AQLA FS +EQ MN +L E+
Sbjct: 61 RAVGNPSLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKN 120
Query: 76 SNNLA---QASSYIGKNITNADGSI 97
+ QA + IGK + +
Sbjct: 121 GQKPSENFQALNLIGKAVAGDSSKV 145
>gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus
TCF52B]
gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus
TCF52B]
Length = 222
Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ K + KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ
Sbjct: 9 NIYNLSTNSKKQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITN 68
Query: 66 MNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
M+ ++Q+ ++S+ QASS +GK + S G T+ V E P
Sbjct: 69 MSESVQKFVESSASLYRAQASSMVGKYAVVKSN--------VLELSNGTTSTQVFKLESP 120
Query: 123 ITTGIRISN 131
++I +
Sbjct: 121 SHVILKIYD 129
>gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium
197N]
gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N]
Length = 230
Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T T + + S + QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E
Sbjct: 7 TSNAKTPEVGNASANAAKSIQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 66
Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
+N TL + + A++ IGK + +S
Sbjct: 67 NLNKTLLSISGQIDVSQSMNAAALIGKAVLVPGDKVS 103
>gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp.
2_A_57_CT2]
gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp.
2_A_57_CT2]
Length = 150
Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
++ + Q ++ LG+D FLK+L+TQ+++QDP PM+ + +AQ+A FS +EQ
Sbjct: 7 SSLMLSNYQSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQM 66
Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITN-------------ADGSISGVVNAIQVS 107
MN T+++L+ N L ++++GKN+T +G V +IQ
Sbjct: 67 TNMNKTMEKLVAFQEQNQLMTYNNFLGKNVTWHKLTESSEPNEEPIIEEGTGRVVSIQYK 126
Query: 108 STGLTAITVDNTEI 121
+ I D T++
Sbjct: 127 NNTAVFILDDGTKL 140
>gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
Length = 233
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 1 MEINTEVNPTQQ-----------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE 49
M++N+ Q E ++ K LGQ FLKL+ Q+++QDP PM +
Sbjct: 1 MDVNSNSQSAQNALLSKLGISTTEERNAEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGD 60
Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
VAQ+A FS + +MN T+ + + +A + + +G ++ N +
Sbjct: 61 FVAQMAQFSSVAGISEMNQTMSSIAGQMSQFQVASSVNMLGHSVMMPG-------NIARA 113
Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131
+ G T+D + T I +
Sbjct: 114 DNNGEIQGTLDLASASLDTQIEFLD 138
>gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani
AFC27]
gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani
AFC27]
Length = 226
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
K LG + FLKL+ Q+ +QDP EPM S ++Q+A F ++ + ++ QE+
Sbjct: 23 KKAQNTELGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSG 82
Query: 74 -LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
L+SN QAS +G+++ A GSI G V
Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAESSLEAGGSIRGAVE 120
>gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
Length = 142
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ M+++L L
Sbjct: 19 KQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQMTNMSTSLNTFLT 78
Query: 76 SNNLA---QASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDN--TEIPITTGI 127
+ + + S IGK D GV+ V + ++ D T + + +
Sbjct: 79 QSQASPILKGSELIGKTAAWLDEEGNKKQGVILTASVKNNEVSFGINDENHTVLSLNDIL 138
Query: 128 RISN 131
+S+
Sbjct: 139 EVSS 142
>gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus
40B]
gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus
40B]
Length = 236
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +
Sbjct: 20 SLQESNKKAEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90
MN+ + L + SN QASS +G+++
Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDV 107
>gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii
LLAP12]
gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii
LLAP12]
Length = 123
Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 52/95 (54%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
+GQ ++K+ + ++ +QDP +P+ E +AQ+A FS ++Q+ N L +L++ + +
Sbjct: 9 DVGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLIQLHYGNR 68
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116
S +G ++ G+V AI+ + + + +
Sbjct: 69 GLSLLGHSVKITGEEGYGLVEAIRFTEEQMPEVRI 103
>gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
Length = 205
Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + +K LGQD F KLL TQ+ QDP EPM+ + +AQ+A FS++E +
Sbjct: 15 NVTTTNSASSGQDRIEQKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMT 74
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
+ + + A A YIGK ++ + G + G V +++ G T + +D +
Sbjct: 75 SNLTKSFDNFNSTQQFASAHGYIGKTVSLSSGEV-GEVTSVE-RQNGQTLVFLDGSNTDG 132
Query: 124 TTGIRI 129
I
Sbjct: 133 RDIGTI 138
>gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile
QCD-63q42]
Length = 202
Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+
Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98
Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112
MN L LL ++ L+ A+S IGK + + D +I GVV + + +
Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158
Query: 113 A-ITVDNTEIPIT 124
+ VD ++ +
Sbjct: 159 LELEVDGSDKTVG 171
>gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
Length = 236
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +
Sbjct: 20 SLQESNKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90
MN+ + L + SN QASS +G+++
Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDV 107
>gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 145
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ + +++ LGQD F+K+L TQ++HQDP +PM E + Q+ F+Q++Q +N T
Sbjct: 19 QQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQLQSLNETQ 78
Query: 71 QELLKSNNLAQASSYIGKNIT--NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
++ + + +G+++ N DG I G V AI+ G +D ++ +
Sbjct: 79 EQ-------SSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKVDFEDVV 130
Query: 128 RI 129
I
Sbjct: 131 EI 132
>gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
Length = 178
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 26/147 (17%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ ++ +LG+DAFL+LL+TQ++HQDP P ++ +AQLA FS +EQ QM
Sbjct: 23 ASQTKTARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGF 82
Query: 71 QELLK-------SNNLAQASSYIGKNI---------------TNADGSISGVVNAIQVSS 108
+ + K S + S+ IGKNI + +G V ++VS+
Sbjct: 83 ENVSKLVSNIDSSVLVGSLSNMIGKNIQWTHVTKTKDAEGNPKTKSETFAGNVRGVKVSN 142
Query: 109 TGLTAITVDNT----EIPITTGIRISN 131
+ D E+ ++ I++
Sbjct: 143 GKPMVVAQDAKGKLHEVEVSEIDAIAD 169
>gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297]
gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297]
Length = 248
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 2 EINTEVNPTQ--QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N+ + + + S LG+ FL+L+I ++ +QDP +P ++ +A+LA FS
Sbjct: 6 NVNSALGQYDIGNKKKEETSNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFST 65
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+E M++ +EL KS+ QASS +G +T + S
Sbjct: 66 VEGIQNMSAGFEELATSYKSSQALQASSLVGGAVTIDGNTSS 107
>gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
Length = 221
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q +K K LG++ FL LL+ Q+ +Q+P EP E +AQLA FSQ+E ++N+++
Sbjct: 15 QIKQDTKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGIEKLNTSMG 74
Query: 72 ELL---KSNNLAQASSYIGKNITNADGS 96
+L +S+ QASS +G+ +
Sbjct: 75 SMLSSFQSSQALQASSLVGRKVIVPSEK 102
>gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
Length = 251
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + +L + F+ L ITQ++HQDP +PM++ E +QLA FS ME ++QM+ +
Sbjct: 17 QSNHPEPVGSSSLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSDNM 76
Query: 71 QELLK---SNNLAQASSYIGKNITNADGSISGVVNA 103
++LL S N Q S IGK I DG+ GV +
Sbjct: 77 EKLLSYQMSQNNLQLLSLIGKTI-ETDGNEIGVTDG 111
>gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15]
gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15]
Length = 218
Score = 87.7 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N T + K + +D FLKL +TQ++HQDP P +SE + QLA +Q+EQ
Sbjct: 2 VNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQ 61
Query: 63 SVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSI 97
+ NS L +L + SYIGK++T I
Sbjct: 62 AYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQI 99
>gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
B-14911]
gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
B-14911]
Length = 211
Score = 87.7 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
++ + + ++ + LG+D FLK+L+ Q+++QDP+ P++ + +AQ+A FS +EQ
Sbjct: 7 SSLMLSSYKKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQM 66
Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNIT----------NADGSI---SGVVNAIQVS 107
MN+++Q+L++ +L S + GK I NA SI +G V++IQ
Sbjct: 67 TNMNTSIQKLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFK 126
Query: 108 STGLTAITVDNTEIPITTGIRI 129
+ I D TE+ +
Sbjct: 127 NGNAVFILEDGTELGPANISEV 148
>gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
Length = 233
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN- 67
T K+ S + +G D FL L++ Q+++QDP++PM + + QLA F + ++N
Sbjct: 14 STPLGNEKAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNA 73
Query: 68 --STLQELLKSNNLAQASSYIGKNITNADG 95
S L L QA++ +G+++
Sbjct: 74 GFSGLSNALSGGQALQAAALVGRSVVTDSN 103
>gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
Length = 233
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+++ + + + K+ LGQ FLKL+ Q+++QDP PM + +AQ+A FS +
Sbjct: 16 SKLGISTTQDKNAVPKEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
+M+ T+ + + +A + +Y+G ++ + +G I G +
Sbjct: 76 KMSETMSGIADQMGQFRVASSVNYLGHSVMIPGNLARADDNGEIHGAIE 124
>gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 240
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+T + + KK LG+DAFL+LL+TQ+K+Q+P EP E VAQLA FS +E
Sbjct: 24 STTTDALGAATGAATGKKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGI 83
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96
+N T+ + S+ QASS +G+++
Sbjct: 84 TTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDK 119
>gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 180
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L
Sbjct: 25 NQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGL 84
Query: 71 -------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAIQVSSTGLT 112
+ S + Q S IG+ + DG ++ G + + ++ +
Sbjct: 85 SDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGVSITDGEPS 144
Query: 113 AITVDNTE---IPITTGIRISN 131
I N + + I+ +RI +
Sbjct: 145 VIADVNGKTHQVKISELVRIGD 166
>gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
Length = 221
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++Q+ ++S+
Sbjct: 22 KKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESVQKFVESSAS 81
Query: 80 A---QASSYIGKN 89
Q SS +GK
Sbjct: 82 LYRAQVSSMVGKY 94
>gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
Length = 226
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
K LG + FLKL+ Q+ +QDP +PM S ++Q+A F ++ + ++ +E+
Sbjct: 23 KKAQNTELGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSG 82
Query: 74 -LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
L+SN QAS +G+++ A GSI G V
Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAEGSLEAGGSIRGAVE 120
>gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
Length = 225
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 13/123 (10%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ K+ LG+DAF++L++ Q+K+Q+P EP + +AQLA FS +E+ ++ ++
Sbjct: 19 NQEGKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVD 78
Query: 72 EL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
++ +S+ QAS+ +GK + ++G I+G + +STG ++V N
Sbjct: 79 DVVGQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGTIQ--VPASTGGLRLSVMNQS 136
Query: 121 IPI 123
+
Sbjct: 137 GEL 139
>gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t. morphotype
B']
Length = 266
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + LG+DAF+ LLITQ+++QDP PM SE +AQ+A F+ +EQ + +
Sbjct: 18 QNKPETREPDQDLGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQMMNVALAT 77
Query: 71 QELLKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ + + Y KN+ T SG V ++ + + E+ + I++
Sbjct: 78 NKQTALSMVGNFVEYSYKNLETGKTEYSSGKVEYVKTQGD-DALLGIGENEVKLADIIQV 136
Query: 130 SN 131
N
Sbjct: 137 LN 138
>gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
B316]
gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
B316]
Length = 237
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N EV T +E + + +D+FLK+L+ Q+K+QDP EP +E + Q A F+Q+EQ
Sbjct: 13 NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQL 72
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAIT 115
M +++ L++AS +GK + + GVV+ + ++ +
Sbjct: 73 SNMANSM-------ALSRASEMVGKTVRVTQYNPDNGKTTEVVGVVDFVTYNAN-KAYLN 124
Query: 116 VDNTEIPITTGIRISN 131
++ T + + +
Sbjct: 125 IEGTNYNVEDVTEVFD 140
>gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 235
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 24 KNKPTETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
+ L + SN QASS +G+++ + ++ GL A+
Sbjct: 84 ENLNSSMTSNQALQASSLVGRDVLVPGSA------GVKKDDAGLAAMV 125
>gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
Length = 248
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
K + L Q+ FL LL Q+ +QDP +P+ + +AQ+A F+ ++ +MN L
Sbjct: 34 KVTGQTDLKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGSLNA 93
Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNA 103
+ S+ QASS +G+++ V
Sbjct: 94 AMTSSQALQASSLVGQDVLVPGNEGFKSVEG 124
>gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
Length = 248
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
KK + +DAFL L+ITQ+++QDPT P S+ +AQ A FSQ+EQ M + + L+
Sbjct: 26 PKKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVDRLVAMQQ 85
Query: 79 LA---QASSYIGKNITNADGSI 97
A++YIG ++
Sbjct: 86 QTMNFNAAAYIGLEARALGNTV 107
>gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio
metschnikovii CIP 69.14]
gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio
metschnikovii CIP 69.14]
Length = 235
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ +++ ++ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN
Sbjct: 24 QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSAMTSNQALQASSLVGRDV 106
>gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila
LSv54]
gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea
psychrophila LSv54]
Length = 248
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S T+G+ FL LL+ Q+++QDP P + +E AQLA FS +EQ + +N + ++ S
Sbjct: 26 SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85
Query: 77 NNLAQASSY---IGKNITNADGSISGVVNAIQV 106
+ + + IGK + I + ++
Sbjct: 86 TSNSDNIALLNTIGKEVLYYGDEIDFQGDPVEF 118
>gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
Length = 186
Score = 86.9 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S +KK+L + F+ LL+ Q+K+QDP+ PM +E +AQ + ME+ M T+
Sbjct: 24 TGANGASTAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEKLTTMTDTI 83
Query: 71 QELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
E A++ +GK + T ADG++ V + + VD E+ +
Sbjct: 84 AESFALQMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYSVPMVVVDGVEVTLDAVQT 143
Query: 129 I 129
+
Sbjct: 144 V 144
>gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus]
gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633]
gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus 10329]
Length = 235
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 NKKAEGSTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
13855]
gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
13855]
gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
Length = 260
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--- 72
+ LG++ FLKLL TQ+++QDP+ PMK + AQLA FS +EQ ++ ++E
Sbjct: 54 SQATSANLGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGK 113
Query: 73 ----LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
L +S N + A+ IG+ + + ++ Q + G VD +
Sbjct: 114 SDGALAQSINDSMATDLIGRTVKTSGNTL-------QWTGEGEATFGVDLERPASEATVT 166
Query: 129 ISN 131
I +
Sbjct: 167 IRD 169
>gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus
iheyensis HTE831]
gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831]
Length = 172
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + LG+D FLKLL+ Q+++QDPT+PM S+ ++Q+A FS +EQ + M++++
Sbjct: 11 NNQQKARVPSQELGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI 70
Query: 71 QELLKSNNLA---QASSYIGKNIT-----NADGSISG----VVNAIQVSSTGLTAITVDN 118
+ L+ ++ ++ Q S IG+ ++ G +G +V + + +
Sbjct: 71 EMLVNNSLVSPVLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENG 130
Query: 119 TEIPITTGIRIS 130
I T I++
Sbjct: 131 ERIYADTVIQVG 142
>gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis
DSM 21326]
gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis
DSM 21326]
Length = 236
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 25 KNKPTETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
+ L + SN QASS +G++ + DGS++ +VN Q + +
Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQAVDNLMVRV 139
>gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
Eklund]
gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
Eklund]
Length = 274
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N + T++ K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ
Sbjct: 44 VNHYNSATRRGTKIVKKGNEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 103
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLTA 113
+NST+ + A S +GK + + G V ++ +
Sbjct: 104 MANLNSTM-------SFNSAGSMVGKTVAMSSYDDYGRQYGGTVTNVRKDGDDIIL 152
>gi|119714999|ref|YP_921964.1| flagellar hook capping protein [Nocardioides sp. JS614]
gi|119535660|gb|ABL80277.1| flagellar hook capping protein [Nocardioides sp. JS614]
Length = 163
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + + + ++ FL L++ Q+++ DP P + E +AQ A F+ +E+ +
Sbjct: 12 STGMYQPSTATSASDDKEMFLNLMVAQLRYHDPMNPADSGEFLAQNAQFTALEKMQDVAD 71
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITT 125
LL + AS +G+ +T D +SG+V ++ + G + VD + +
Sbjct: 72 QTAALLATQISFGASGLVGRYVTYLDQDGAAVSGLVGSVTYDANG-PMLVVDGQNVTLGQ 130
Query: 126 GIRI 129
+
Sbjct: 131 VQAV 134
>gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411]
gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411]
Length = 226
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+I + N + + K T+ ++ FLKLL+ Q+++QDP PM + + +
Sbjct: 1 MDIASIANQANIAESMNSDKVANPKATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENT 60
Query: 56 VFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSST 109
+FSQ+EQ + M+ ++ + + K N A+SY+GK I+ + I S ++ + + +
Sbjct: 61 MFSQLEQLMNMSKSMNKFMGDLKGNPKEYAASYLGKYISTGENKINVSSNYIDRVNFTLS 120
Query: 110 GLTAITVDNTEIPITTGIRISN 131
+T+ I + G I++
Sbjct: 121 KDAKVTI---HISNSKGEDIAD 139
>gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399]
gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399]
Length = 176
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ + L
Sbjct: 21 NQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQMTNVAKGL 80
Query: 71 -------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAIQVSSTGLT 112
+ S + Q S IG+ + DG ++ G + + ++ +
Sbjct: 81 SDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGVSITDGEPS 140
Query: 113 AITVDNTE---IPITTGIRISN 131
I N + + I+ +RI +
Sbjct: 141 VIADVNGKTHQVKISELVRIGD 162
>gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri
ES114]
gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri
MJ11]
gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114]
gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114]
gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri
MJ11]
Length = 236
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + + K L Q+ FL LL Q+ QDP +P++ + +AQ+A F+ ++ +
Sbjct: 20 SLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90
MN+ L + SN QASS +G+++
Sbjct: 80 MNTQFDSLNSSMTSNQALQASSLVGRDV 107
>gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas
entomophila L48]
gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas
entomophila L48]
Length = 234
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
LG+DAFL+LL+TQ++HQ+P +P E VAQLA FS +E +NS++ + + S+
Sbjct: 36 NALGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLNSSVNSIITGMGSS 95
Query: 78 NLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
QASS +G+++ + S +G V Q + G I + +
Sbjct: 96 QALQASSLVGRSVIVQNEKAMVDTTKSFTGQVVVPQNITDGKVTIKDKDGNV 147
>gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 235
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QSKPEETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
Length = 235
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
LGQDAFL+LL+TQ+++QDP PM E VA+LA FS +EQ ++N+ + L L
Sbjct: 28 LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87
Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107
A ++IGK I ++S G +A+ +
Sbjct: 88 LGAVNFIGKTIEATGNAVSLADGKASAVTFT 118
>gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile
630]
gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile]
Length = 202
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+
Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98
Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112
MN L LL ++ L+ A+S IGK + + D +I GVV + + +
Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158
Query: 113 A-ITVDNTEIPIT 124
+ VD ++ +
Sbjct: 159 LELEVDGSDKTVG 171
>gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
DSM 4359]
gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
DSM 4359]
Length = 223
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + Q + + KTL +DAFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ
Sbjct: 7 NIYYSTLQGVRTNYTASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQI 66
Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
+ S +++ +++ N AQ +S IGK + + ++ G ++I + + +
Sbjct: 67 TNLTSAVKDFVEAQTSVNPAQLASLIGKYVVVKNNEVNLKDGEADSIIFNLDEDANVVI 125
>gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
bv. albensis VL426]
gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
bv. albensis VL426]
Length = 235
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLSSSMTSNQALQASSLVGRDV 106
>gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
Length = 144
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
LGQ F KLL Q++ QDP P+ ++ +AQLA FS + QS + + + L + A
Sbjct: 28 LGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQSEALVTQMGYLRADIQMQAA 87
Query: 83 SSYIGKNIT-NADGS-ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ +GK +T +DG ++G V +I S + + +T ++ + ++
Sbjct: 88 AGLVGKEVTVVSDGELVTGTVTSIAADSD-AVYVKIGDTYYTYSSVVEVA 136
>gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae
O395]
gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
8457]
gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
BX 330286]
gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
B33]
gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TMA 21]
gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC9]
gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TM 11079-80]
gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
12129(1)]
gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae
MJ-1236]
gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
CIRS 101]
gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
INDRE 91/1]
gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC27]
gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
CT 5369-93]
gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae
RC385]
gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
757]
gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
8457]
gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
12129(1)]
gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TM 11079-80]
gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC9]
gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
TMA 21]
gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
B33]
gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
BX 330286]
gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
MJ-1236]
gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
CIRS 101]
gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
RC27]
gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
INDRE 91/1]
gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
CT 5369-93]
gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae
RC385]
gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
757]
gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae
LMA3894-4]
Length = 235
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
Length = 222
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M+ + ++ + + S S K + D FL LL TQ+K+QDP +PM SE V QL FS +
Sbjct: 1 MDSVSPISTSGTKSSTSADKLSKDFDMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNV 60
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
EQ + N L+++ L S + A + SYIG+++ D +
Sbjct: 61 EQQIAQNKNLEQMILLLNSQSAASSVSYIGRDVQFTDSTT 100
>gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 221
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
K + LGQ FLKL+ Q++HQDP +PM S + QLA FS ++ +N+ L
Sbjct: 18 SKTPKKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKFSNL 77
Query: 74 ---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ S+ + + ++ +G N+ +A GS GVV A + + +
Sbjct: 78 STSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGAFV 136
>gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
Length = 235
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 24 NKKTGESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ENLNSSMTSNQALQASSLVGRDV 106
>gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces
maris DSM 8797]
gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces
maris DSM 8797]
Length = 145
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
L ++F+KLLIT++++QDPTEP+ + +AQ++ +++ +++++ TL+E+ +L
Sbjct: 29 NGLTAESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLT 88
Query: 81 QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
QA++ IGK + +G ++GVV V G + + + E+P++ +
Sbjct: 89 QAAALIGKEVEGQEGQQNPVAGVVERAFVR-DGKSYVGIGAFELPVSAITSV 139
>gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae 642]
Length = 229
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N+ NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNSLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ GS S
Sbjct: 73 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111
>gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 174
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + K LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ ++ L
Sbjct: 27 NQAKAGKKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQMTNVSKGL 86
Query: 71 QELLK-------SNNLAQASSYIGKNI------TNADGSIS-----GVVNAIQVSSTGLT 112
+++ K S + Q SS IG+ I DG+++ G V + ++ +
Sbjct: 87 EKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGVSITDGAPS 146
Query: 113 AITVDNT---EIPITTGIRIS 130
I N ++ I+ +R+
Sbjct: 147 IIADVNGQSHKVQISEVVRVG 167
>gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
Length = 274
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T++ K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +NST
Sbjct: 51 TKRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLNST 110
Query: 70 LQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTA 113
+ + A + +GK + + G V ++ +
Sbjct: 111 M-------SFNSAGNMVGKTVALSSYDDYGRQYGGTVTNVRKDGDDIIL 152
>gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC586]
gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC586]
Length = 235
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus
VM573]
gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus
VM603]
gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
VM223]
gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus
VM603]
gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus
VM573]
gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
VM223]
Length = 235
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei
1710b]
Length = 459
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 236 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 295
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 296 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 323
>gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17]
gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17]
Length = 231
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+K TL Q AFL LL Q+K+QDP PM ++ VAQ+A FS + +MN+TL +
Sbjct: 29 PAKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIAT 88
Query: 76 SNNLAQ---ASSYIGKNITNADGSISGVVNA 103
N A +Y+GK + + G +
Sbjct: 89 KLNATTPADAMNYVGKTVLTEGTTAYGRTSG 119
>gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
Length = 161
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
K+ + + FL LL+TQ+K+QDP+ PM +E +AQ + MEQ +
Sbjct: 21 TTPAVTRTPKQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASMEQLTALTKVN 80
Query: 71 QELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
QE +++ IG+++T + + +G V++I+ + + + + +P+ +
Sbjct: 81 QESFALQMRVASAALIGQDVTFTNSHGDTTTGRVDSIRYDGE-VPTVIIGDEHVPLNSIA 139
Query: 128 RIS 130
I+
Sbjct: 140 GIT 142
>gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri
DSM 4166]
Length = 227
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ ++ Q + LG++ FL+LL+ Q+ +Q+P EP + E + QLA FS +E
Sbjct: 12 SILDQYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVE 71
Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNI 90
++NS++Q +L +S+ QASS +G+ +
Sbjct: 72 KLNSSMQTILSGYQSSQALQASSLVGRKV 100
>gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio
salmonicida LFI1238]
gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida
LFI1238]
Length = 236
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + + K L Q+ FL LL Q+ QDP++P++ + +AQ+A F+ ++ +
Sbjct: 20 SLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGK 79
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNI 90
MN L + SN QASS +G+++
Sbjct: 80 MNKQFDSLNTSMTSNQALQASSLVGRDV 107
>gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens Pf0-1]
gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly
[Pseudomonas fluorescens Pf0-1]
Length = 242
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + LG+DAFL+LL+TQ+K+Q+P +P S VAQLA FS +E +NST+
Sbjct: 32 ASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLNSTV 91
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
L S+ QASS +G+N+ + + ++ T ++ + IT
Sbjct: 92 SSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTITD 149
>gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
Length = 135
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ L + L++++TQ+ +QDP +P+ E V+QLA F+ +EQS Q+ + + +L
Sbjct: 12 NGRQADPSGLDLQSLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKIDDL 71
Query: 74 LKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
L + Q +G+ + G+++G+V + G +T+++ +S
Sbjct: 72 LSVQSATQTIGLLGRKVDIRGDAGTMTGIVKGVSFK-DGEPKLTIESENGQFLADATVS 129
>gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
Length = 138
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + ++L D F+KLL+TQ+K+QDP PM ++ +AQ S ME+ ++++
Sbjct: 12 QTGNAARQPVQSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTELSTGA 71
Query: 71 QELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+E A+ +G + T DG+ + + +TG+ +TV N+++P+ +
Sbjct: 72 KESFSLQMRTAAAQIVGSEVAYTLPDGTAGSGIASAVSFTTGVPVVTVGNSKVPLDSISG 131
Query: 129 IS 130
IS
Sbjct: 132 IS 133
>gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC341]
gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
RC341]
Length = 235
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi
DSS-3]
gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3]
Length = 222
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ Q + K + D F+++L TQ K+Q+P EP+ +SE AQLA FS +EQ
Sbjct: 11 GATSQAPQTTTPEKRSLSSDFDTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQT 70
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITN 92
+ N TL L L + ++A+ S++IGK +
Sbjct: 71 KTNDTLTALVEKLGATDMAKLSNWIGKEVRA 101
>gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus
CMCP6]
gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus
YJ016]
gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio
vulnificus MO6-24/O]
gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio
vulnificus CMCP6]
gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016]
gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio
vulnificus MO6-24/O]
Length = 235
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 24 SKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15]
Length = 225
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
+ LG++ F++L++ Q+K+Q+P EP + E ++QLA FS +E+ ++ T++++
Sbjct: 25 QGTSELGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLEEMQNLSGTVEDVVGQF 84
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119
+S QAS+ +GK + A+G I+G + +STG ++++
Sbjct: 85 RSTQALQASAMVGKTVLAPSQIGILGAEGEITGTIQ--VPASTGGLRLSIEGQ 135
>gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
Length = 237
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
+ L + SN QASS +G++ + N DGS++ +V Q + +
Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMVKLPQAVDNLMVRV 140
>gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
16]
gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
16]
Length = 236
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 25 KNKPNETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
+ L + SN QASS +G++ + DGS++ +V Q + I
Sbjct: 85 ESLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVKLPQAVDNLMVRI 139
>gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 221
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q K S + FLK+L Q ++QDP EP+ +SE AQLA FS +EQ VQ N L
Sbjct: 16 QSATQKKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNELL 75
Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94
L L + NL + +++IGK++ +
Sbjct: 76 DGLAGTLSAANLTEMAAWIGKDVRVSS 102
>gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
Length = 226
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ KS ++L Q+ FLKLL TQ++ QDP P+ ++ VAQ+A FSQ +MN +L
Sbjct: 19 SSTTTTKKSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMNQSL 78
Query: 71 QELLKSNNLAQ---ASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNT 119
+ +++S ++ A+++IGK ADGS +G V +S ++ +
Sbjct: 79 KSMVQSLQQSRVADAANWIGKAALLPSKAASALADGSFAGNVTLPDAASRVDISLVDGSG 138
Query: 120 EI 121
+
Sbjct: 139 TV 140
>gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
magneticus RS-1]
gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
magneticus RS-1]
Length = 232
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLKSNNL 79
LG DAFL+LL+TQ+++QDP +PM E VA+LA FS +EQ ++NS L L + +
Sbjct: 27 LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86
Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107
A ++IGK I +++ G ++ +
Sbjct: 87 IGAVNFIGKTIEANGTAVNVEDGAATSVTFT 117
>gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
noxia ATCC 43541]
gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
noxia ATCC 43541]
Length = 174
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL------- 70
K LG+DAFL+LL+TQ+K+QDP +P SE ++QLA FS +EQ ++ L
Sbjct: 34 KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93
Query: 71 QELLKSNNLAQASSYIGKNI------TNADG-----SISGVVNAIQVSSTGLTAITVDNT 119
+ S + Q SS IG+ + DG S G V + ++ + I
Sbjct: 94 DNINSSVLIGQLSSMIGQPVQWITETKGEDGQLSKQSFEGKVIGVSITDGTPSIIADVGG 153
Query: 120 E---IPITTGIRIS 130
+ + I+ +RI
Sbjct: 154 KTHQVQISKVVRIG 167
>gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
Length = 223
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+
Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74
Query: 69 TLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVD 117
+ + S+ + + ++ +G N+ + S GVV A + +
Sbjct: 75 KVGNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDTTNSAKGVVAATAAGTVNFEITDAN 134
Query: 118 NTEI 121
T +
Sbjct: 135 GTFV 138
>gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC
BAA-1116]
gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116]
Length = 235
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3]
gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3]
Length = 195
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ + +D FLKL + + QDP M ++ + Q A S MEQ M + +
Sbjct: 42 STGTQNTPGIMNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQVQNMTKAVDK 101
Query: 73 L---LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
L + S L ++GK + + + G V ++++ + V N +
Sbjct: 102 LQATMYSTALDGGMKFLGKYVKGVNDKGEKVFGQVETVRLAENNDVQLIVGNQVVSTRFV 161
Query: 127 IRISN 131
R+S+
Sbjct: 162 ERVSD 166
>gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
Length = 235
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 84 ESLNSSMTSNQALQASSLVGRDV 106
>gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens Pf-5]
gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
Pf-5]
Length = 242
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + + K++LG+DAFLKLL+TQ+ +Q+P +P S VAQLA FS +E
Sbjct: 25 NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+NS++ + KS+ QASS +G+++ G+ V + ++ + +V++
Sbjct: 85 TTLNSSVNAITGNYKSSQALQASSLVGRSVIVQTGTTQ-VDTSKSMTGSVTVPSSVNSVT 143
Query: 121 IPITT 125
+ +T
Sbjct: 144 VTVTD 148
>gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile
ATCC 43255]
Length = 202
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+
Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98
Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLT 112
MN L LL ++ L+ A+S IGK + + + +I GVV + + +
Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKENENIVGVVKSTYIKDGEVH 158
Query: 113 A-ITVDNTE 120
+ VD ++
Sbjct: 159 LELEVDGSD 167
>gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
Length = 233
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + K + + FLK+L Q+++QDP P+++++ QLA FS +EQ V+
Sbjct: 22 SASANTTAEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVEQQVR 81
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKN------ITNADGSISGVVNAIQVSSTGLTAITV 116
N L+ L + + ++Q S ++G + ++ V + ++
Sbjct: 82 TNDLLETLGDRMGAMGMSQLSGWVGMEARAIAPVQLDGAPVTLTVPPVPLADAAQIVARD 141
Query: 117 DNTEIPITTGIRIS 130
I + + I
Sbjct: 142 STGTIVQRSDVSIE 155
>gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas
cervicalis ATCC 49957]
gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas
cervicalis ATCC 49957]
Length = 231
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + + ++ + D FLKLL Q++ QDP P ++ VAQLA FSQ+EQ
Sbjct: 15 TNLAASGAPTAQLPGAGSPDFDRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQT 74
Query: 65 QMNSTLQ----ELLKSNNLAQASSYIGKNITNADGSIS 98
+ N+ LQ L +LA+ ++ +GK + ++S
Sbjct: 75 KTNALLQGIAETLSGQASLAENAALLGKAVRTQSETVS 112
>gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 321
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N
Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113
T+ + + ++ ++ NADG +G++ + + G
Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135
>gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
turnerae T7901]
gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
turnerae T7901]
Length = 238
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + LGQ AFL+L+ITQ+++QDP P + +E +AQLA FS +E ++N+
Sbjct: 18 ANKTKEEPKSNELGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNNNF 77
Query: 71 QELLKS---NNLAQASSYIGKNIT 91
+ N QAS+ +G+++T
Sbjct: 78 DSFTNNFMANQALQASTLVGRSVT 101
>gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. campestris str. B100]
gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 221
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 TTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114
+ S+ + + ++ +G N+ +A GS GVV A + T
Sbjct: 75 GNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134
Query: 115 TVDNTEIPITTGIRIS 130
V +P + +S
Sbjct: 135 FVKQLSVPASAAGEVS 150
>gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
Eklund 17B]
gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
Eklund 17B]
Length = 321
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N
Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113
T+ + + ++ ++ NADG +G++ + + G
Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135
>gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
Alaska E43]
gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
Alaska E43]
Length = 321
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N
Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92
Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS-ISGVVNAIQVSSTGLTA 113
T+ + + ++ ++ NADG +G++ + + G
Sbjct: 93 TMSTFAHQQLVGKGATM---DLINADGEYYTGIIRGVSKDNYGTYV 135
>gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
Length = 221
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ N + + K + +D FLKL +TQ+++QDP P +S+ ++QLA +Q+EQ+
Sbjct: 6 SASNDSTAAAAAMKKATGMNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQVEQAY 65
Query: 65 QMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS 98
NS LQ++L N A S+IGK + +S
Sbjct: 66 NTNSNLQDMLNQANNTTTLSAVSFIGKEVVAPGAQVS 102
>gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 214
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 1 MNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ +T+ + KS+ QASS +G+++ S +
Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSVIIDSSSTA 96
>gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida
W619]
gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619]
Length = 235
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + LG+DAFL+LL+TQ++HQ+P +P + E VAQLA FS +E +N ++
Sbjct: 27 ATDTASKTGTDALGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSLNESV 86
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGS 96
+ + S+ QASS +G+++ +
Sbjct: 87 SSITNAMASSQALQASSLVGRSVVVQNDK 115
>gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 221
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114
+ S+ + + ++ +G N+ +A GS GVV A + T
Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134
Query: 115 TVDNTEIPITTGIRIS 130
V +P + +S
Sbjct: 135 FVKQISVPASAAGEVS 150
>gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
Length = 156
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + + +K S ++ +D F+K+LI Q+ +QDPT PM+ E ++Q+A FS +EQ
Sbjct: 7 NDASSYQLPDKTKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQM 66
Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSST-----GLTAIT 115
+ ++ ++ + L S+ IG ++ +++ V+ST + ++
Sbjct: 67 QSIGKGIETMMLNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTSTVKETANVLSVK 126
Query: 116 VDNTEIP--ITTGIRIS 130
D +I ++ G +S
Sbjct: 127 RDGVDILAELSNGKSVS 143
>gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
Length = 226
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
K LGQD FL LL+ Q+++QDP P A+E AQLA +SQ+EQ +N + EL + +
Sbjct: 20 KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79
Query: 81 Q---ASSYIGKNITNADGSIS 98
Q S IG+++ +
Sbjct: 80 QNISTLSLIGQDVVVEGAKFT 100
>gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
12885]
gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
12885]
Length = 183
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
DAF +LL Q+++QDP +P++ + VAQLA +Q+E++ + +T+ L L +A +
Sbjct: 72 DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130
Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+T ADG G V +++ + +D + +
Sbjct: 131 ----VTTADGEQQGTVTGVRLDPA-APGLIIDGRPVAWADVL 167
>gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
Length = 142
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + S K+ +D F+KLL+ QI +QDP PM+ E +AQ+A FS +EQ ++
Sbjct: 12 TLPDQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSSLEQMQAISKQ 71
Query: 70 LQELL---KSNNLAQASSYIGKNITNADGSI------SGVVNAIQVSS-TGLTAITVDNT 119
L +L +++++ SS IGK I + SG V +I + TG A D T
Sbjct: 72 LDSVLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLTGYMADLEDGT 131
Query: 120 EIPITTGIRI 129
+ + I
Sbjct: 132 SVSVYDITSI 141
>gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 221
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119
+ S+ + + ++ +G N+ +A GS GVV A + +
Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTATSAGTVNFEITDANGA 134
Query: 120 EI 121
+
Sbjct: 135 FV 136
>gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 236
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 25 KNKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
+ L + SN QASS +G++ + DGS++ +V Q + +
Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLVPGASGVKTGDGSMAAMVKLPQSVDNLMVRV 139
>gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 221
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 STSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114
+ S+ + + ++ +G N+ +A GS GVV A + T
Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134
Query: 115 TVDNTEIPITTGIRIS 130
V +P + +S
Sbjct: 135 FVKQISVPASAAGEVS 150
>gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus
LGP32]
gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32]
Length = 236
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ ++ K+ L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 25 AKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 84
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 85 ESLNSSMTSNQALQASSLVGRDV 107
>gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
Length = 275
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 18/135 (13%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + T + LG+DAFL+LL+ Q+++QDP P +E V+QLA FSQ+E+
Sbjct: 17 NTAITTTNK---TKLGSSELGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEEL 73
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGS---ISGVVNAIQVSSTGLTAITV 116
+ S + +QA S +GK++ T+++G ISG V+ I +S + ++V
Sbjct: 74 QNLT-------ASTDKSQAFSLVGKDVILNATDSNGRTTYISGTVDFINMSKS-KVQLSV 125
Query: 117 DNTEIPITTGIRISN 131
+ ++ + +
Sbjct: 126 NGELYDMSQLYTVVD 140
>gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
Length = 239
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 3 INTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N+ TQQE + S LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS
Sbjct: 11 LNSLSIQTQQEEEAAAAEASGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSS 70
Query: 60 MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAI 104
+E ++N+ SN QASS +G++++ V ++
Sbjct: 71 VEGLERLNTNFDSFTSSFISNQALQASSLVGRSVSVPSSKAELVEGSV 118
>gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
Length = 221
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNA-----IQVSSTGLTAI 114
+ S+ + + ++ +G N+ +A GS GVV A + T
Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134
Query: 115 TVDNTEIPITTGIRIS 130
V +P + +S
Sbjct: 135 FVKQISVPASAAGEVS 150
>gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217]
gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 135
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
++ + + + D FL+L + Q+ +QDP EP+ SE +AQLA FS +E + Q N
Sbjct: 9 NSYATTNPQTNIKLDDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSLEINRQSNDNSL 68
Query: 72 ELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
LL + QA IG+++ T + + G V + + G +TV + + T I+
Sbjct: 69 SLLAIGSSDQALGLIGRSVEVNTQSGQAFIGDVTGVNFTQQG-PMLTVKGADDSLLTDIK 127
Query: 129 IS 130
+
Sbjct: 128 LG 129
>gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
1873]
gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
1873]
Length = 272
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N T + K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ
Sbjct: 42 VNHYNKATNRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 101
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNA-----DGSISGVVNAIQVSSTGLTA 113
+NST+ + AS+ +GK + + G V ++ +
Sbjct: 102 MANLNSTM-------SFNSASNMVGKTVALSSYDEYGKQYGGTVTNVRKDGDDIMV 150
>gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio
orientalis CIP 102891]
gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio
orientalis CIP 102891]
Length = 237
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAI 114
+ L + SN QASS +G++ + DG+++ +V Q + +
Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKKDDGNMAAMVKLPQAVDNVMVRV 140
>gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas
eutropha C91]
gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91]
Length = 223
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ + ++ Q+ FLKLL+TQ+++QDP PM +E +Q+A S +
Sbjct: 10 VSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69
Query: 63 SVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI 97
++NSTL++L+ ++ +A++ IG+++ +
Sbjct: 70 IDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADM 107
>gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
93-146]
gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
93-146]
Length = 244
Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ ++ VN + + + K L Q++FL LL+ Q+++QDPT P+K +E QLA S +
Sbjct: 11 VDTSSPVNANSKTGLVADNGKDL-QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTV 69
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QA+S IG + +I
Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTI 109
>gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
Length = 220
Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTL-GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
T + S+ S L G+D FLK+LI Q+++Q+P P+ ++ AQLA FS +EQ
Sbjct: 5 TNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQL 64
Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITN 92
MNSTL+ L + N A++ IG+ ++
Sbjct: 65 TNMNSTLESLSALQTTQNGIMAANLIGRQVSA 96
>gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans
AK-01]
gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum
alkenivorans AK-01]
Length = 230
Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ + LGQ+ FL+LLI Q+K+QDP PM+ ++ AQLA FS +EQ + +L+
Sbjct: 16 SNPTTESTGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSLEQLFGIGDSLE 75
Query: 72 ELLKSNNLAQASS---YIGKNITNADGSIS 98
E+L + +GK I D S++
Sbjct: 76 EMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105
>gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus
12B01]
gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus
12B01]
Length = 237
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 26 AKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 85
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 86 ESLNSSMTSNQALQASSLVGRDV 108
>gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 221
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ +
Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74
Query: 71 QEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNT 119
+ S+ + + ++ +G N+ +A GS GVV A + +
Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134
Query: 120 EI 121
+
Sbjct: 135 FV 136
>gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus
(Silurana) tropicalis]
Length = 222
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N
Sbjct: 16 TTTATKGNSTTDPKAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNL 75
Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
++Q + + Q + IG+++ + A+ G + NT
Sbjct: 76 SMQNMSEQFAAMQTLQGTMMIGRSVLAEGDKL-----AVDDKGNGKGYFVLGNT 124
>gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 230
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+ LGQ+ FL L+ TQ+++QDP PM+ ++ +AQ+A FS + MN TL L
Sbjct: 28 APANNDQLGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDMNQTLNGLAE 87
Query: 74 -LKSNNLAQASSYIGKNIT--------NADGSISGVVN 102
L +A AS+ +G ++ + +G I G+++
Sbjct: 88 TLAEFRIATASNMLGNSVMIPGNYARPDNNGEIHGMLD 125
>gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
Length = 245
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75
+ K T + FL LL +Q+K+QDP PM ++E QL F+Q+EQ + N +++LL
Sbjct: 24 RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83
Query: 76 -SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++ A A Y+GK + A+ ++ + + V + GLTA DN I +
Sbjct: 84 GNSQAAMAVGYLGKYV-EAESTVVALQDGQAVFTYGLTA-AADNVTIAL 130
>gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035]
gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035]
Length = 230
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
+ FL+LL TQ+++QDP P+++S+ QLA FS +EQ V N L +L L + L+
Sbjct: 37 DFETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGARLGAQGLS 96
Query: 81 QASSYIGKNITNAD------------GSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
Q S +IG ++ +A ++ ++ I V+ IP +G
Sbjct: 97 QVSGWIGMEALATGPVAFSGQPISLIATVESQADAAEIVASDARGIIVNRQTIPARSG 154
>gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
Bay]
gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
Bay]
Length = 232
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+++ + +N T E + ++ +L QD FL++L+ Q++ QDPTEP ++ V Q+ ++Q+
Sbjct: 3 IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
EQ +++ + L + S QA+ YIG + +++ +I
Sbjct: 62 EQLTNISTAMDTLIAGMASLGATQAAGYIGMGVEAGGYTVAKKGESIS 109
>gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
Length = 139
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ T + S + +LG DAFLKLL+ Q+K+QDP+ P ++ +AQ A + +++
Sbjct: 10 STQATTPNQSSGQSALGSLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVDKLN 69
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ +L+ S AQA+ +G+ + T + SG+V++ S + V ++
Sbjct: 70 SIAQQQTQLVASQLSAQAAGLVGREVTYTTASGERASGIVSSTTFGS--APTLRVGAVDV 127
Query: 122 PITTGIRIS 130
P+++ S
Sbjct: 128 PLSSITGTS 136
>gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the
initiation of hook assembly) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 231
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N +N T K K + L + F+KLL+ Q+K+QDPT PMK +E + LA +
Sbjct: 7 VNESLNNTIVGEPVLAGKKKGSEELNSN-FMKLLVAQMKNQDPTNPMKNNELTSHLAQIN 65
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+ ++N+TL + + +N QAS+ IG+ + +I
Sbjct: 66 TLAGIEKLNTTLGSIVGQINNNQPVQASALIGRGVMIPGNTI 107
>gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae
Cit 7]
Length = 229
Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT +K+ S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ S S
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111
>gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
Length = 140
Score = 83.8 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ N S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ
Sbjct: 8 SGANQNANNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDN 118
M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN
Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127
Query: 119 TE-IPITTGIRI 129
+P+T I
Sbjct: 128 DSLVPMTYVTEI 139
>gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp.
CNPT3]
gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp.
CNPT3]
Length = 232
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+ +N + P Q +K K+ L Q+ F LL Q+ +QDP +P+ SE +AQ+A F+
Sbjct: 10 LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69
Query: 60 MEQSVQMNS---TLQELLKSNNLAQASSYIGKNITNADGS 96
E +M + L+ +L S+ +ASS +GK + +
Sbjct: 70 AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKVLIPSDT 109
>gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
Length = 224
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T ++ + + + + QD F+KLL+TQ+++QDP PM ++ +Q+A S +
Sbjct: 13 TLLDAVNGKKNTTTTSVDAAQDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGID 72
Query: 65 QMNSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98
++N+TL+ L+ + + QAS+ IG+NI ++
Sbjct: 73 KLNNTLETLINNVQMGQSYQASNMIGRNILTPGNTVE 109
>gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
Length = 213
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I+ SK+ + D FLKLL+ Q+++QDP PM ++ +Q+A + +
Sbjct: 4 IDPYAAINTPTESKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63
Query: 63 SVQMNST---LQELLKSNNLAQASSYIGKNITNAD 94
++N T L Q +S IG+++T
Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVTVEG 98
>gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4]
Length = 251
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ ++ SKS + LG D FL+LL ++++QDP EP +E VAQLA FSQME
Sbjct: 8 VDGKIPKDTSTTSKSDTSNDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEA 67
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAIT 115
++ M ST++ + A++ +GK + T + G V+ +Q G I
Sbjct: 68 TLGMQSTIES-------SNANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKIC 119
Query: 116 VDNTEIPITTGIRISN 131
V+ ++ ++++
Sbjct: 120 VNGVLYSLSDVYQVAD 135
>gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium
eligens ATCC 27750]
gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium
eligens ATCC 27750]
Length = 185
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++NT ++ T + S S +K TL + FL+L++ ++++QDP EP S+ +AQLA F+Q+E
Sbjct: 22 DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITV 116
+ +MN+ + AS +GK + N+DG I G V+ + S G + +
Sbjct: 81 ATKEMNT-------NTLQGMASDLVGKQVIMTTNQNSDGFIGGTVDYWE-SINGTVYLGI 132
Query: 117 DNTEIPITTGIRISN 131
I+ + +
Sbjct: 133 GGKLYDISDLDTVMD 147
>gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2080]
gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium
HTCC2080]
Length = 239
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 6 EVNPT-QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+NPT E K+ S + +G + FL+L+I Q+++QDPT+PM ++QLA F+Q+
Sbjct: 18 SLNPTRAAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQ 77
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95
++N + L L QAS +G++++ +
Sbjct: 78 ELNESFSGLTETLTGQQALQASQMVGRSVSTSSN 111
>gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp.
TrichCH4B]
gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp.
TrichCH4B]
Length = 231
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V
Sbjct: 13 TATGGAAAGKQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQV 72
Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITN 92
N TL +L + +N++Q + ++GK +
Sbjct: 73 LTNETLTSMLTALSLSNMSQLTGWVGKEVRA 103
>gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae B728a]
gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae
B728a]
gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 229
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ S S
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111
>gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
43243]
gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
43243]
Length = 199
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NTE + L +DAFL+LL+ ++++QDP EP +E VAQLA F+Q+E+
Sbjct: 12 LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI------QVSSTGLTAITV 116
M +++ + QA++ +GK + + SG + + V+S G T + +
Sbjct: 72 MQNMANSMAQ-------NQANALVGKTVIMNTITASGTTSYVGGVVDRIVNSNGKTYVGI 124
Query: 117 DNTEIPITTGIRISN 131
+ + I I N
Sbjct: 125 NGSLYDINDLNSILN 139
>gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
Length = 237
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS
Sbjct: 26 AKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 85
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L + SN QASS +G+++
Sbjct: 86 ESLNSSMTSNQALQASSLVGRDV 108
>gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
15053]
gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
15053]
Length = 171
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T S SK L + F KLL Q+++QD PM SE +AQ+ ++
Sbjct: 19 TSSAGNSAGTSSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQMVQTQMIQAIT 78
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNA----DGSISGVVNAIQVSS---TGLTAITVD 117
+M++ E+ N ++ ASS +GK +T A DG +G VS ++ +D
Sbjct: 79 EMSAINLEMYAINTISYASSMVGKTVTMAEVDEDGKFTGETTTGTVSGILMGNNPSLYID 138
Query: 118 NTEIPITTGIRIS 130
E ++ + +
Sbjct: 139 GKEYSLSQIMTVG 151
>gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
43160]
gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
43160]
Length = 140
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
S +G+D FL+LL+ Q+++QDP P +E ++Q A F+Q+E+ ++ + L
Sbjct: 17 TSTVTRTDQMGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASL 76
Query: 74 LKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ A + +G ++ D +++G V ++++S + VD ++PI +S
Sbjct: 77 VALQRSLSAGALVGHTVSYTDEGGVTVTGTVGSVRISGD-EPSAVVDGVDVPIGRLTEVS 135
>gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
Length = 141
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ K LG+DAFL LL+TQ+K+QDP PM + +AQ+A FS +EQ +N+TL
Sbjct: 20 NQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNTTLT-- 77
Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
N + +I + N S + +V+ + + GL +T +N E+P
Sbjct: 78 ---NTQSSIMEHITQMNNNFVKSQTNIVDQLVKINEGLRKLTGENPEVP 123
>gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM
16841]
gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM
16841]
Length = 224
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K K LG D FL++L ++++QDP EP +E +AQLA FSQ+E + + ST++
Sbjct: 29 KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE---- 84
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+ A+ +GK + T I+G + + + G T ++V++ +
Sbjct: 85 ---ASSANDLVGKYVIMKVTSSTTGETSYIAGTCDYV-LHKNGETFLSVNDGLYNLKDLD 140
Query: 128 RISN 131
+++
Sbjct: 141 TVAD 144
>gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola
batsensis HTCC2597]
gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola
batsensis HTCC2597]
Length = 221
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
++I T + + + L +FLKLL Q+ +QDP EPM +S V+QLA S
Sbjct: 2 VDITGTAAATSGQTLSTVASNKLSADYQSFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLS 61
Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
Q+EQS+Q N+ L+ + L + L IG+ ++
Sbjct: 62 QVEQSIQTNTHLESISGQLANAGLTSDLGLIGREVSVPG 100
>gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA]
gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA]
gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens
KN400]
Length = 218
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ N T + K + +D FLKL +TQ+++QDP P ++E + QLA +Q+EQ
Sbjct: 2 VYGVTNDTAAAAAAMKKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQ 61
Query: 63 SVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
+ S L L+ A S+IGK IT + I
Sbjct: 62 AYNTNSNLSNLLNLVNGATSLSAVSFIGKEITASGDLIK 100
>gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC1989]
Length = 136
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + + + Q+ FL++L+ Q+ +QDP EP+ SE ++Q A + + Q+ N L
Sbjct: 8 NSQSNTALQRAGIDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTLTQTQSSNDKL 67
Query: 71 QELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
LL ++ QA IGK + ++ G V I SS G +TV + G+
Sbjct: 68 DSLLTIQSVNQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTVLRDDGGFINGVG 127
Query: 129 IS 130
+S
Sbjct: 128 LS 129
>gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 229
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+
Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92
Query: 80 AQASSYIGKNITNADGSIS 98
QASS +G+++ S +
Sbjct: 93 LQASSLVGRSVIIDSSSTT 111
>gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 228
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ S +
Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110
>gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040]
gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp.
TM1040]
Length = 231
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L
Sbjct: 24 SATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLT 83
Query: 76 S---NNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
+ +N++Q + ++G+ + +++ ++
Sbjct: 84 ALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN 120
>gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans A8]
gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans A8]
Length = 232
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + Q + S + + L QD FLKLL+TQ+++QDP PM+ +E +QLA S +E
Sbjct: 11 TGLGLAQTGANGSSTAQGL-QDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGIT 69
Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ +T+ + + A + IGK + I V+A + +T +D
Sbjct: 70 NLKNTMLAISGQIDVSQSMNAVAMIGKGVLIPGSKIKSGVDAANPEARVVTPYGLDLQGD 129
Query: 122 PITTGIRISN 131
IRIS+
Sbjct: 130 AQKVQIRISD 139
>gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
Length = 220
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+ S S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N
Sbjct: 15 NNKSATSNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNK 74
Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSI 97
T++ + + + Q + IG+ + ++
Sbjct: 75 TMESMAGQFTAMQVLQGTQMIGRTVLTEGNTL 106
>gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
Length = 232
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K T+ ++FLKLL Q+++QDP PM A++ + QLA S +EQS++ N TL ++ L
Sbjct: 34 PKKATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDTL 93
Query: 75 KSNNLAQASSYIGKNITNADGSIS 98
KS+ + + +G+ + A +S
Sbjct: 94 KSSGMRMDMALLGRKVEVASDQMS 117
>gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato T1]
gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato Max13]
gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato K40]
gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
tomato T1]
Length = 229
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNL 79
LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+
Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92
Query: 80 AQASSYIGKNITNADGSIS 98
QASS +G+++ S +
Sbjct: 93 LQASSLVGRSVIIDSSSTT 111
>gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf]
gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf]
gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
Length = 265
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MEINTEVNPTQQEFSKS--KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+E +TE T+ K + L ++AF K+L ++ +QDPT +E V+QLA FS
Sbjct: 29 IEKSTEATATETARGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFS 88
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
+EQ +NS ++ L ASS+IGK + +G+V + +
Sbjct: 89 SLEQMANLNSMMK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 137
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A + IGKN+ DG+ +SGVV + + G+
Sbjct: 152 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGTEKLSGVVKGVVRNGLGVSI 211
Query: 112 -TAITVDNTE----IPITTGIRI 129
+T D E +P +
Sbjct: 212 RVTVTKDGKEQDIYVPFEYVTNV 234
>gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 225
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98
L+SN QAS+ +G+ + ++S
Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106
>gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. B076]
gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. mori str. 301020]
gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. lachrymans str. M301315]
Length = 228
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 15 LNTLQNPTP---TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ S +
Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110
>gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217]
gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217]
Length = 230
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+ K+ + + FLK+L TQ+++QDP P+++S+ QLA FS +EQ V
Sbjct: 20 ATTSDNSLEKATGGFSTDFETFLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLT 79
Query: 67 NSTLQEL---LKSNNLAQASSYIGKN------ITNADGSIS--GVVN----AIQVSSTGL 111
N L +L + + L+Q S +IG +T + +S V+ A ++ +T
Sbjct: 80 NDLLTDLGARIGAQGLSQVSGWIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNA 139
Query: 112 TAITVDNTEIPITTG 126
I V+ IP T+G
Sbjct: 140 QGIIVNRQPIPTTSG 154
>gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44]
gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44]
Length = 220
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ T + + QD FLKLL+ Q+ +QDP PM +E +Q+A + +
Sbjct: 8 VDGTTTNTTSNTKNAVTNPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
Q+N T+ + + + Q +S IG+ + ++
Sbjct: 68 IQQLNQTMASMSSQFTAMQVLQGTSMIGRTVLTEGNTL 105
>gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
12809]
gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
12809]
Length = 232
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 4 NTEVNPTQQEFSK---SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
T V+ Q + S + ++ L Q FL L ITQ+++QDPT+PM S + Q A F+Q+
Sbjct: 6 TTTVDTKQYDTSDIEYNNTQGELSQSDFLNLFITQLQNQDPTDPMDDSAMMEQTATFTQV 65
Query: 61 EQSVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
E M +L E+ + AS YIGK + + S G+ A
Sbjct: 66 ELLTSMEKSLSEIAGGASNLNTQQLMMSASGYIGKLVEFDGNN--------TYLSDGVAA 117
Query: 114 ITVDNTEIPITTGIRISN 131
++ + E+P T + I +
Sbjct: 118 VSFEAEEVPFKTTVTIKD 135
>gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
Length = 156
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83
G F L+ Q+++QDP EP S+ +AQ+A FS +EQ+ + L ++ + +
Sbjct: 29 GMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQTQK-------LAQTAGIQAGT 81
Query: 84 SYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ +GK++ T + GVV A+ S + ++ +P+T R+++
Sbjct: 82 AMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGWVPLTDVTRVTS 137
>gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella
drancourtii LLAP12]
gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella
drancourtii LLAP12]
Length = 224
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N N T + + +K LGQ FL+L++ QI++QDP +P E ++QLA FS +
Sbjct: 9 NGASNATTNQVAPLGAKN-LGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGV 67
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+M ++Q++ L+SN QAS+ +G+ + + + +++ G +D
Sbjct: 68 SKMQESMQQMANSLQSNQALQASALVGRKVLVSS-------DHLKLDKEGDVKTAID 117
>gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp.
T7-7]
gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp.
T7-7]
Length = 228
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ + ++++ + +G QD FL LL+TQ+++QDP PM ++ +Q+A S +
Sbjct: 9 GSTDSSAMSYAQAGTNSLMGDTQDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNG 68
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N+TL L + + QA+ IGK + IS
Sbjct: 69 INQLNTTLLALSGQMDVSQSMQAAGLIGKEVLVPGSKIS 107
>gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp. CCS1]
gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1]
Length = 221
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
T + + + + T D FL+LL TQ+++QDP P ++E AQLA FS +EQ V+ N
Sbjct: 13 TATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQVETN 72
Query: 68 STLQEL---LKSNNLAQASSYIGKNIT-NADGSISGVVNAIQVSST 109
L++L S N+ Q S +IG + + +G +Q++
Sbjct: 73 DLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPN 118
>gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium
sp. Marseille]
gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp.
Marseille]
Length = 225
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ ++ + KS QD FLKLL+TQ+++QDP P+ ++ +QLA S +
Sbjct: 14 SLLDQMNGAAASKKSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGID 73
Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
++N TL+ L+ +S L QAS+ I + ++
Sbjct: 74 KLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQLA 110
>gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira
multiformis ATCC 25196]
gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC
25196]
Length = 222
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6 EVNPTQQEF------SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
PT F S +K + QD FLKLL+TQ+K+QDP P+ ++ QLA S
Sbjct: 6 NTQPTSNPFAAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQIST 65
Query: 60 MEQSVQMNSTLQELLKS---NNLAQASSYIGKNI 90
+ ++N+T++ + S QA+ IG+ +
Sbjct: 66 VNGVERLNATIRTIADSFTAGQSLQAAGMIGREV 99
>gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum
BKT015925]
gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum
BKT015925]
Length = 275
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N T + K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ
Sbjct: 45 VNHYNKATNRGTKIVKKGHEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQ 104
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTA 113
+NST+ + A S +GK + + G V ++ +
Sbjct: 105 MANLNSTM-------SFNSAGSMVGKTLALSSYDDYGRQYGGTVTNVRKDGDDIIL 153
>gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella
pneumophila str. Paris]
gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella
pneumophila str. Paris]
Length = 225
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98
L+SN QAS+ +G+ + ++S
Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106
>gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7]
gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7]
Length = 256
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
Q + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 45 SQSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEI 104
Query: 69 -TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDN 118
L ++ S+ QAS +G+ N++ ++SGVV+ + D
Sbjct: 105 VNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDK 164
Query: 119 TEIPITTGIRISN 131
++ T I S+
Sbjct: 165 GQVVSTFNIDGSD 177
>gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2]
gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2]
Length = 217
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K+ + FL+++ TQ+K+QDP P+ +++ QLA FS +EQ + NS L+ +
Sbjct: 21 KTAIASDFETFLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQF 80
Query: 75 KSNNLAQASSYIGKNITNA 93
+AQ + ++G A
Sbjct: 81 GLMGMAQMAGWVGHEARAA 99
>gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
4b H7858]
gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459]
gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J1-194]
gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
R2-503]
gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
HPB2262]
gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J2-064]
gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J1-175]
gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J2-071]
gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
N1-017]
gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
4b H7858]
gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
R2-503]
gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J2-071]
gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
HPB2262]
gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
J1-194]
gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
N1-017]
gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99]
gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208]
gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria
monocytogenes 1816]
gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria
monocytogenes 220]
gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str.
Scott A]
Length = 140
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + +
Sbjct: 14 TNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAV 73
Query: 71 QEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDNTE-IPI 123
+L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN +P+
Sbjct: 74 DKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPM 133
Query: 124 TTGIRI 129
T I
Sbjct: 134 TYVTEI 139
>gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium
vulgare Y25]
gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium
vulgare Y25]
Length = 217
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLA 80
+ FLK+L+ Q+++QDP P+ ++E AQLA FS +EQ VQ N L +L+ NL
Sbjct: 27 DFETFLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGNLG 86
Query: 81 QASSYIGKNITNA 93
S +IGK++ A
Sbjct: 87 AMSGWIGKDVRVA 99
>gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella
amazonensis SB2B]
gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B]
Length = 242
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
+E K+ L Q+ F LL Q+ QDP +P++ + +AQ+A FS ++ +N
Sbjct: 31 TKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDHI 90
Query: 69 -TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDN 118
L ++ S+ QAS +G+ +++ + ++ GV++ + T + I D
Sbjct: 91 VNLNTVMTSSQALQASGLVGQKVLIPSASGHVSAEEPNLKGVISTSKPIETIMVRIEDDK 150
Query: 119 TEIPITTGIRISN 131
++ T + S+
Sbjct: 151 GQLVKTFSVDGSD 163
>gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis
L1-82]
gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis
L1-82]
gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1]
Length = 251
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ +
Sbjct: 26 NDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIES-------S 78
Query: 81 QASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
A++ +GK + T + G V+ +Q G I V+ ++ ++++
Sbjct: 79 NANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYSLSDVYQVAD 135
>gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria
monocytogenes EGD-e]
gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
1/2a F6854]
gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria
monocytogenes Finland 1988]
gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL R2-561]
gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165]
gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria
monocytogenes 10403S]
gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria
monocytogenes J0161]
gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900]
gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria
monocytogenes LO28]
gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5578]
gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5923]
gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e]
gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
1/2a F6854]
gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar
6b str. SLCC5334]
gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165]
gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900]
gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5578]
gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria
monocytogenes 08-5923]
gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
Length = 140
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ
Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVDN 118
M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ DN
Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127
Query: 119 TE-IPITTGIRI 129
+P+T I
Sbjct: 128 DSLVPMTYVTEI 139
>gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella
pneumophila str. Lens]
gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella
pneumophila str. Lens]
gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 130b]
Length = 225
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98
L+SN QAS+ +G+ + ++S
Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106
>gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus
Nitrospira defluvii]
gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus
Nitrospira defluvii]
Length = 101
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 1 MEIN---TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M+I+ T+ P + K LG+D FLKLL+TQ++HQDP +PM+ + VAQ A F
Sbjct: 6 MDISKVITQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQF 65
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQ 81
SQ+EQ ++ S +++ + AQ
Sbjct: 66 SQLEQMSKLVSLMEKSVTLQENAQ 89
>gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila str. Corby]
gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 2300/99 Alcoy]
gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella
pneumophila str. Corby]
gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella
pneumophila 2300/99 Alcoy]
Length = 225
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS + +M +LQ+L
Sbjct: 22 SDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS 81
Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98
L+SN QAS+ +G+ + ++S
Sbjct: 82 LQSNQALQASALVGRKVLVNSNTLS 106
>gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter
xylosoxidans C54]
Length = 231
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + S S QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E + +T+
Sbjct: 16 AQTGANSASTAQGLQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGITNLKNTM 75
Query: 71 QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+ + A + IGK + ++ V+ + +T +D + +
Sbjct: 76 LAISGQIDVSQSMNAVAMIGKGVLVPGSNVKVGVSTENPAERVVTPYGIDLQKDAAKVQV 135
Query: 128 RISN 131
RI++
Sbjct: 136 RIAD 139
>gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 243
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ + Q+ K+ + L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++
Sbjct: 17 QLKGMHDKKVQQEQKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVD 76
Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNI--------TNADGSISGVV 101
+MN L L SN QASS +G ++ DG++SGVV
Sbjct: 77 GITKMNDQFGVLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVV 127
>gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD
[Oxalobacteraceae bacterium IMCC9480]
gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD
[Oxalobacteraceae bacterium IMCC9480]
Length = 224
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQ 81
QD F+KLL+TQ+K+QDP P+ ++ +QLA S + +MN+TL+ ++ S Q
Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + ++
Sbjct: 93 AAGMIGHGVLAPGKQMA 109
>gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T]
gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T]
Length = 224
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+I V +SK+ + ++ FL LL TQ+K+QDP PM+ +E +QLA S +
Sbjct: 9 DIAASVLAKINTREESKASASGDMNSRFLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTV 68
Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS----GVVNAIQVSSTGLTA 113
+ ++N Q + + QA++ +G+ + ++ G V ++ + +
Sbjct: 69 DGIERLNKMFQSFVDGQSAYDSMQAAALVGRGVLVEGKKLTLTEAGAVGGFELDAAADSV 128
Query: 114 IT 115
+
Sbjct: 129 VL 130
>gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
Length = 220
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ T S + QD FLKLL+ Q+ +QDP PM +E +Q+A + +
Sbjct: 8 VDGTTTNTTSNTKNSVTDPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
Q+N T+ + + + Q +S IG+ + ++
Sbjct: 68 IQQLNQTMASMSSQFSAMQVLQGTSMIGRTVLTEGNTL 105
>gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. actinidiae str. M302091]
Length = 229
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+ + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + ST+ +
Sbjct: 25 TATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTVDTIA 84
Query: 74 --LKSNNLAQASSYIGKNITNADGSIS 98
KS+ QASS +G+++ S +
Sbjct: 85 TSYKSSQALQASSLVGRSVIIDSSSTT 111
>gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
3502]
gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
19397]
gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
Maree]
gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A
str. ATCC 3502]
gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
19397]
gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 265
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 48 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 101
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L ASS+IGK + +G+V + +
Sbjct: 102 -LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 137
Score = 36.8 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A S IGKN+ DG+ +SGVV + + G+
Sbjct: 152 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGTEKLSGVVKGVVRNGLGVSI 211
Query: 112 -TAITVDNTE----IPITTGIRI 129
+T D E IP +
Sbjct: 212 RVTVTKDGKEQDIYIPFEYVTNV 234
>gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila]
Length = 244
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+N T Q + KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q++ S E
Sbjct: 7 NVNGISRTTSQTAGTTTPKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSE 66
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110
+++ + +L + S+ QASS +G+N+ + +GS+SGVV +
Sbjct: 67 GIASLSTQMGKLNDQMISSQALQASSLVGQNVLLQSNMGYLDKEGSLSGVVAVGTTNKYS 126
Query: 111 LTAITVDNTE 120
IT++N +
Sbjct: 127 NIKITIENEK 136
>gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas
europaea ATCC 19718]
gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas
europaea ATCC 19718]
Length = 223
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ + + + QD FLKLL+TQ+++QDP PM +E +Q+A S +
Sbjct: 10 VSELLASNSGSIKSYRKDEEDPQDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69
Query: 63 SVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI 97
++N+TL++L+ ++ +A++ IG+ + +
Sbjct: 70 IDKLNTTLEKLVADSDARRSFEAATMIGRGVLVPGTDM 107
>gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
Length = 270
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + KS + FL LLITQ+K+QDPT PM+ +E +QLA S +E
Sbjct: 7 NTIIGDAPSSYHTKKSGSEDIKGNFLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGI 66
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+N T+ + + + +ASS +G + + I
Sbjct: 67 ETLNKTVNNIVGQIDQSQALRASSLVGHGVMVSGNKI 103
>gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. syringae FF5]
gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. japonica str. M301072PT]
gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 229
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+NT NPT + + S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E
Sbjct: 16 LNTLQNPTP---TATNSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+ ST+ + KS+ QASS +G+++ S S
Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111
>gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM
1251]
gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM
1251]
Length = 221
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N + + +K K LG+D F+KLL+ +++HQDPTEPM + + ++Q + + +E
Sbjct: 8 LNAATHAESAAANAAKDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEA 67
Query: 63 SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98
S N L EL S + +Q S IGK +I+
Sbjct: 68 SENTNKALSELAASMSASQQFSTVSAIGKTADLGSNAIT 106
>gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
10331]
gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 159
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
+L + FL LL+T++++Q+P PM S+ V+Q + S++E + S L ++ S +
Sbjct: 24 ASLTANEFLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGIL 83
Query: 81 QASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
ASS IG+++T DGS ++G V+ + S+ G+ + V +PI I +
Sbjct: 84 SASSLIGQSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAVG 134
>gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
Length = 220
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+ + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T++ +
Sbjct: 22 ADPATDPNAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMA 81
Query: 74 --LKSNNLAQASSYIGKNITNADGSI 97
+ + Q +S IG+++ ++
Sbjct: 82 DQFSALQVLQGASMIGRSVVTEGNNL 107
>gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36]
gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36]
Length = 218
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ + NP Q + S L ++ FL++++ QIK+QDP +P+ +E V+QLA FS +
Sbjct: 4 INNSNRTNPAQTSEVTANSALGL-KNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMV 62
Query: 61 EQSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
E + S+ E+L + + Q+++ IG + +G+ +G+ +
Sbjct: 63 EGVEGLRAGQSSQAEMLYTQQVLQSTALIGTTVLVPS---TGIAAKQGEKPSGVIRLDGA 119
Query: 118 NTEIPIT 124
E+ +T
Sbjct: 120 ADEVTLT 126
>gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter
antarcticus 307]
Length = 220
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 1 MEINTEVNPTQQEFSKSKSKKT-----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
MEI+ + P Q S +++ + + FLK+L Q+++QDP P +SE QLA
Sbjct: 1 MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60
Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89
FS +EQ+V N L L+ N +AQ + ++GK
Sbjct: 61 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 97
>gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
Length = 220
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 2 EINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
E+ + + + S SKS++TL D FL LL TQIK+QDP +P+ ++ QL +S
Sbjct: 3 EVGSTTSASATTSSSSKSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSS 62
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYI---GKNITNADGSI---SGVVN-AIQVSSTGLT 112
+EQS+ N+ L++L+ S QAS Y+ G +T + + SG + A +VS
Sbjct: 63 VEQSILTNTYLEQLMASVKSGQASGYVSYLGAEVTASGDTAMLESGSASWAYKVSEDATG 122
Query: 113 AITVDNTE 120
+ + N++
Sbjct: 123 FVKIRNSD 130
>gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301]
gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301]
Length = 225
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
++ S +KS QD F+ LLITQ+K+QDP PM ++ +Q+A S + ++
Sbjct: 16 LDSVNGTSSSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKL 75
Query: 67 NSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98
NST++ L+ S QA++ IG N+ S++
Sbjct: 76 NSTVESLMSSMQSGQSYQAANMIGHNVLVPGTSVT 110
>gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4]
Length = 273
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83
Q+ FL+LL+ ++++QDP EP + VAQLA F+Q+E + + + + +A+
Sbjct: 45 NQEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQNDMATI-------EAN 97
Query: 84 SYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
S +GK + D + + G VN + G + V+ + + +
Sbjct: 98 SLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVNEKNYKVDDIESVVD 147
>gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium
botulinum H04402 065]
Length = 270
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A + IGKN+ DG +SGVV + + G+
Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 216
Query: 112 -TAITVDNTE----IPITTGIRI 129
IT D E +P +
Sbjct: 217 KVTITKDGKEQDVYVPFEYVTNV 239
>gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
1131]
gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
1131]
Length = 285
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
NT P + K ++ +D FLK+++TQ+++QDPT+PM+ ++ +QLA + +E
Sbjct: 13 NTTAGPQPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLES 72
Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97
+++ ++ + + S QA+ +GK + I
Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI 110
>gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
Length = 270
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A + IGKN+ DG +SGVV + + G+
Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 216
Query: 112 -TAITVDNTE----IPITTGIRI 129
IT D E +P +
Sbjct: 217 KVTITKDGKEQDVYVPFEYVTNV 239
>gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides 2.4.1]
gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1]
Length = 222
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
M + ++S+ + + + + FL++L TQ+++QDP PM++ + QL
Sbjct: 1 MNVTGTETSAGSSTTRSRGEASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60
Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89
A FS +EQ V+ N L + S L++ + +IG+
Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98
>gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium
modesticaldum Ice1]
gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium
modesticaldum Ice1]
Length = 188
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ KS LG+D FLKLL+TQ+++QDP +PM+ E +AQ+A FS +EQ + ++
Sbjct: 18 TTTKKSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLEQMKNIADGFEKF 77
Query: 74 LKSNNLAQ 81
S A
Sbjct: 78 QSSQQKAM 85
>gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia
proteamaculans 568]
gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568]
Length = 225
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N +K+ + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + ++ ++N
Sbjct: 13 NSVIGANAKNNTSQDLN-NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLN 71
Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+TL + + SN QAS+ IG + +I
Sbjct: 72 TTLGSISGQINSNQSLQASALIGHGVMVPGSNI 104
>gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
51599]
gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
51599]
Length = 256
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
++ NP + +S + T +D FLKLL+ Q+++QDP PM+ +E +QLA S +
Sbjct: 42 MDGVANPNVNKNDESTADGT--EDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRG 99
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
+N ++ S N + + IGK +
Sbjct: 100 IESLNKSMANFTASAAQNTALASVNMIGKKVLAPGERFE 138
>gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides KD131]
gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N]
gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131]
gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N]
Length = 222
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
M + ++S+ + + + FL++L TQ+++QDP PM++ + QL
Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60
Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89
A FS +EQ V+ N L + S L++ + +IG+
Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98
>gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium
tetani E88]
gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium
tetani E88]
Length = 174
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N T + + + L ++AFL++L ++ HQDP +E V Q+A F+ +EQ +N
Sbjct: 17 NYTDRGTKIVRPGEELDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLN 76
Query: 68 STLQELLKSNNLAQASSYIGKN--ITNAD---GSISGVVNAIQVSSTGL 111
+T++ A A+S IGK + N D GV+ + +
Sbjct: 77 NTMR-------FAGATSLIGKYAMVNNTDTYGNLYHGVITGVSRDKGSI 118
>gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
Length = 151
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ T K L + AFL LL+ Q+++QDP+ PM +S+ + Q S ME V
Sbjct: 9 GATSRTTDASGTKVPTKELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLV 68
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEI 121
+ T +E A+ +G+ +T D + GVV A+ + + + + + +T++
Sbjct: 69 ALADTQRESFALQMRMAAAQLVGQQVTWTDAAGATQKGVVTAVSYAGS-VPTVKIGDTDV 127
Query: 122 PITTGIRI 129
+ +
Sbjct: 128 TLDAVSSV 135
>gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1]
gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1]
Length = 293
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E +++G + FL+L++ Q+++QDPT+P + + Q+A F+ Q+ S +E
Sbjct: 87 EDKDEGDPQSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFRE 146
Query: 73 L---LKSNNLAQASSYIGKNITNAD 94
++S+ +AS +G+ +
Sbjct: 147 FFEHMRSDQSLRASQLVGREVVTES 171
>gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC3088]
gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma
proteobacterium IMCC3088]
Length = 228
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q+ + + L +DAFL+L Q+K Q+P +PMK VAQLA FS +E M ++L
Sbjct: 18 QRNAVYNNGEDDLDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGIKGMQASL 77
Query: 71 QEL---LKSNNLAQASSYIGKNI 90
+ L L++++L SS +GK +
Sbjct: 78 ETLVSNLRTDSLLTGSSLVGKKV 100
>gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera
4Rx13]
gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera
4Rx13]
Length = 225
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N ++ T + + Q+ FL LL+ Q+K+QDPT PM+ +E QLA + ++
Sbjct: 8 NESLDNTVTGVNAKSNTGQDLQNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGI 67
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QA++ IG + +I
Sbjct: 68 EKLNTTLGSISGQINSNQSLQATALIGHGVMVPGSNI 104
>gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas
atlantica T6c]
gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c]
Length = 228
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N +
Sbjct: 23 ADESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82
Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ SN QASS IG+ + + G V + G++ + ++++ + T I I N
Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDST-TLNTKITIEN 135
>gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
A1501]
gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
A1501]
Length = 226
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
LG+ F+ LL+TQ+ +Q+P +P SE VAQLA FS +E +N+++ LL +S+
Sbjct: 29 LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88
Query: 80 AQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
QA+S +G ++ G S+SG V + SS + + ++ + I + +
Sbjct: 89 LQATSLVGSSVIVETGSALVDTSESLSGTV--VMPSSGSNVNVKIYDSTGSLVKTISLGD 146
>gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
Length = 229
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT ++ Q++FL LL+ Q+K+QDPT P++ +E +QLA S ++
Sbjct: 11 NTSAKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGI 70
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QAS+ +G + SI
Sbjct: 71 EKLNTTLGSISGQIDSNQSLQASALLGHGVMVPGNSI 107
>gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 225
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
++ S + S Q+ FLKLL+TQ+K+QDP P+ + +Q++ S + ++N+
Sbjct: 18 NSKSGASDAMSTSEEVQNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIEKLNT 77
Query: 69 TLQELLKS---NNLAQASSYIGKNITNA-------DGSISGVVN 102
TL+ LL + QA+ +GK++ A G SG VN
Sbjct: 78 TLETLLNTFNDGQSMQAAGLLGKSVLVAGSQLALTGGRASGGVN 121
>gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
30120]
gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
30120]
Length = 288
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
N+ P + K ++ +D FLK+++TQ+++QDPT+PM ++ QLA + +E
Sbjct: 13 NSVAGPAAAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72
Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97
+++ ++ + + S QA+ +GK + I
Sbjct: 73 MNKLSDSVTGISQQIGSGQSLQATQLVGKGVLIPRNEI 110
>gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
Length = 202
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
MEI+ + + K+ ++L DAFL LL Q+K+QDP P+ +++ V QLA FS
Sbjct: 1 MEISPTSAQSAASAANQKATQSLATDLDAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFS 60
Query: 59 QMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
+EQ VQ N L+ ++ +S Q + IG I ++ +ISG + + + S
Sbjct: 61 SLEQQVQTNKYLETMMGLLQSTLGGQQTDVIGAQIGASEITISGAFDPLPIVSG 114
>gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4]
gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4]
Length = 256
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS--- 68
+ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 46 NSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEIV 105
Query: 69 TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVDNT 119
L ++ S+ QAS +G+ N++ ++SGVV+ + D
Sbjct: 106 NLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDKG 165
Query: 120 EIPITTGIRISN 131
++ T I S+
Sbjct: 166 QVVSTFNIDGSD 177
>gi|308050373|ref|YP_003913939.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
gi|307632563|gb|ADN76865.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
Length = 228
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
+ +S + + L Q+ F LL Q+ QDP +P+ + ++Q++ F+ ++ +N
Sbjct: 17 ESAVPESNANQALTQEDFFSLLSQQLSMQDPMKPVDNDQMISQMSSFATVDGINNLNDEI 76
Query: 69 -TLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSSTGLTAITVDN 118
TL ++ SN QAS +G+ + +A ++GVV+A + + +
Sbjct: 77 QTLNSVMTSNQALQASGLVGQKVLIPSNVGHLGDAGTPVTGVVSAPTGTQNLMVRVEDST 136
Query: 119 TEI 121
++
Sbjct: 137 GQV 139
>gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2]
gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2]
gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
Length = 224
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ N
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86
Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
AQ +S IGK + + +++ G ++I + + V
Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVV 126
>gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
17029]
Length = 222
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
M + ++S+ + + + FL++L TQ+++QDP PM++ + QL
Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60
Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKN 89
A FS +EQ V+ N L + S L++ + +IG+
Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGRE 98
>gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD
[Gemmatimonas aurantiaca T-27]
gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD
[Gemmatimonas aurantiaca T-27]
Length = 267
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+ +G+D FLK+L+ Q+K+QDP PM + AQLA FS +EQ ++MN +L +
Sbjct: 44 PTNPNGMGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESLDAQKSA 103
Query: 77 NN 78
Sbjct: 104 TA 105
>gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str.
Langeland]
gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str.
Langeland]
gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str.
230613]
Length = 273
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A S IGKN+ DG +SGVV + + G+
Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219
Query: 112 -TAITVDNTE----IPITTGIRI 129
IT D E +P +
Sbjct: 220 RVTITKDGKEQDIYVPFEYVTNV 242
>gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str.
Kyoto]
gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str.
Kyoto]
Length = 273
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A + IGKN+ DG +SGVV + + G+
Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVNLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219
Query: 112 -TAITVDNT 119
IT D
Sbjct: 220 KVTITKDGK 228
>gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica
W22703]
Length = 228
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ Q
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127
ASS IG+ + GS GVV ++ +TA D+ + + T
Sbjct: 92 ASSLIGRGVMVPGTNVLAGSKDGVVTTTPFGVELERAADKVTATITDSNGVAVRTIE 148
>gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium
japonicum UT26S]
gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium
japonicum UT26S]
Length = 218
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L
Sbjct: 23 TGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASEL 82
Query: 75 KSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ L A+S+IGK++ +A G G V+ +S + N +
Sbjct: 83 TGSRLGDAASWIGKSMLVQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137
>gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata
DSM 2581]
gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata
DSM 2581]
Length = 230
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 3 INTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
I+T V T + + + ++ F+ LL+TQ+++QDP PM + +QLA +
Sbjct: 5 IDTGVTSTLNGGGSAGLNAGQSSALRENFMTLLVTQLQNQDPLNPMDNHQTTSQLAQINT 64
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTA 113
+ ++N +L E+ + + QAS IGK + + G + + G+
Sbjct: 65 VSGIEKLNDSLSEINGQIDAGQSLQASGLIGKGVLVPGNRVLLSQGEDGEVTTTPFGVEL 124
Query: 114 IT-VDNTEIPITTG 126
DN + IT G
Sbjct: 125 QRPADNVTVTITNG 138
>gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
Length = 273
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 56 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 109
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 110 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 145
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A S IGKN+ DG +SGVV + + G+
Sbjct: 160 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKLSGVVKGVVRNGLGVSI 219
Query: 112 -TAITVDNTE----IPITTGIRI 129
IT D + +P +
Sbjct: 220 RVTITKDGKDQDIYVPFEYVTNV 242
>gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila]
Length = 241
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+
Sbjct: 24 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 83
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
S+ QAS+ +G+N+ DGS+ GVV + IT+++
Sbjct: 84 SSQALQASALVGQNVLLQSNVGYLEKDGSLQGVVAVGTENKYSNVKITIEDES 136
>gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE
PC73]
gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas
albilineans]
Length = 226
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNN 78
L Q FLKL+ Q++HQDP +PM S+ V+Q+A S ++ +N T+ L + ++
Sbjct: 31 ALKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQ 90
Query: 79 LAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDN 118
+ + ++ IG + +DG+ G+V A +S G+ +TV +
Sbjct: 91 VLRGANLIGHKVLVPSASLPLGSDGAAGGMVAA---TSAGVVNLTVSD 135
>gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima MSB8]
gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima MSB8]
Length = 224
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86
Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
AQ +S IGK + + +++ G ++I + + V
Sbjct: 87 AQLASLIGKYVVVRNNTVNLVGGQSDSIIFNVDEDAHVVV 126
>gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
Length = 228
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + S + QD F+KLLI Q+K+QDP PM +E +Q+A S + +MN++L
Sbjct: 20 ANNNTSAISETQDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNASLSTF 79
Query: 74 ---LKSNNLAQASSYIGKNITNADGSI 97
+++ QASS IG + S
Sbjct: 80 ISSMQATQALQASSLIGNTVLVEGNST 106
>gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1]
Length = 233
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N
Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81
Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90
+ + L+S+ QASS +G+N+
Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106
>gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
Length = 224
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79
L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ N
Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86
Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
AQ +S IGK + + +++ G ++I + + V
Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVV 126
>gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 140
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ
Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ +
Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127
Query: 118 NTEIPITTGIRI 129
++ +P+T I
Sbjct: 128 DSLVPLTYVTEI 139
>gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
Length = 218
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + S S S QD F+ LLITQ+K QDP PM ++ +QLA S +
Sbjct: 6 NDLLTTMNTRKSGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65
Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
++NST++ ++ +S+ QAS+ IG+ + S++
Sbjct: 66 DKLNSTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103
>gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
15579]
gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
15579]
Length = 279
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS ++
Sbjct: 53 KKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSMMK------ 106
Query: 78 NLAQASSYIGKNIT-----NADGSISGVVNAIQVSST 109
L AS++IGK + +G+V + +
Sbjct: 107 -LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGD 142
Score = 37.2 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGL-- 111
F+ + + + +N+L A S IGKN+ DG I+GVV + + G+
Sbjct: 157 EFAMEDVLNITDDINENSKYNNDLLNAVSLIGKNVLMDDGKEKITGVVKGVVRNGLGVSI 216
Query: 112 -TAITVDNTE----IPITTGIRI 129
IT D E +P +
Sbjct: 217 KVTITKDGKEQDIYVPFEYVTNV 239
>gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp.
TJI-51]
gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp.
TJI-51]
Length = 233
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N
Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81
Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90
+ + L+S+ QASS +G+N+
Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106
>gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 228
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N +
Sbjct: 23 ADDSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82
Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ SN QASS IG+ + + G V + G++ + +++T + T I I N
Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTT-TLNTKITIEN 135
>gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
Length = 223
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N TL+ + S + Q
Sbjct: 36 QDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTSLQVLQ 95
Query: 82 ASSYIGKNITNADGSIS 98
+S +G N+ +++
Sbjct: 96 GASMVGHNVLVESNTLT 112
>gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067]
gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171]
Length = 140
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ
Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ +
Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127
Query: 118 NTEIPITTGIRI 129
++ +P+T I
Sbjct: 128 DSLVPLTYVTEI 139
>gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA]
gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA]
Length = 218
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+K + Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ +L N
Sbjct: 24 TKGSDLQNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNA 83
Query: 79 LAQASSYIGKNITNADGSIS 98
QASS IG+++ +++
Sbjct: 84 TTQASSMIGRSVQVPTNNLT 103
>gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida
KT2440]
gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas
putida KT2440]
Length = 233
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N
Sbjct: 22 TSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLND 81
Query: 69 TLQEL---LKSNNLAQASSYIGKNI 90
+ + L+S+ QASS +G+N+
Sbjct: 82 AVTYIAAGLQSSQALQASSLVGRNV 106
>gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis
HAW-EB3]
gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
Length = 282
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
++ + + L Q+ F LL Q+ QDP +P+ + ++Q+A FS ++ +N
Sbjct: 59 EESSIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDEI 118
Query: 69 -TLQELLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDN 118
L ++ S+ QAS +G+ + + D SI+G+++ + T + D
Sbjct: 119 VNLNSVMTSSQALQASGLVGQKVLIPSDTGYISAEDPSINGIISTPEAIDTITVRVEDDK 178
Query: 119 TEIPITTGI 127
++ + I
Sbjct: 179 GQLVKSFTI 187
>gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
Length = 231
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T N + + L D F+KLL Q K+QDPTEPM +E +QLA FS +EQ
Sbjct: 8 TNYNTATANSASAGGGTNLTSDFDTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQ 67
Query: 63 SVQMNSTLQELLKSNNLAQAS---SYIGKNITNADGSISGVVNAIQVSST 109
V N L L+ L + ++G + A + + VS
Sbjct: 68 QVLTNDNLGSALEQLGLGNMAALTGWVGMEVRAATAASFDGTTPVNVSPN 117
>gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii
DSM 4541]
gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii
DSM 4541]
Length = 285
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
N+ P + K ++ +D FL +++TQ+++QDPT+PM ++ QLA + +E
Sbjct: 13 NSVAGPAAVASNVPKKSQSDDMRDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72
Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
+++ ++ + + S QA+ +GK + I ++ +++ S G +
Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI--ILASLKKESNGENSTV 126
>gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis
ATCC 29906]
gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis
ATCC 29906]
Length = 268
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E
Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+N T+ + + + +A+S + + A IS
Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110
>gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 242
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+
Sbjct: 25 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 84
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
S+ QAS+ +G+N+ DGS+ GVV + IT+++
Sbjct: 85 SSQALQASALVGQNVLLQSNVGYLEKDGSLPGVVAVGTENKYSNVKITIEDES 137
>gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis
glossinidius str. 'morsitans']
gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis
glossinidius str. 'morsitans']
Length = 138
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ FL LL+ Q+++QDPT P+ +E QLA S + +N+ L + S+ QA++
Sbjct: 32 QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI--SSQNLQATT 89
Query: 85 YIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+G + DGS A+ S G ++ D
Sbjct: 90 LVGHGVMV-DGS-----GAVYYSRNGEFSLNAD 116
>gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
34H]
gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
34H]
Length = 256
Score = 80.4 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
S+ L Q F LL ++ +QDPT+P+ ++ ++Q+ FS + +N +
Sbjct: 49 SDGSEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAG 108
Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ S+ QASS +G+++ D ++ G+ V ++ N +I +
Sbjct: 109 SMTSSQALQASSLVGRSVLVED-NVFGMAEGEAVKGKLVSDKPASNVKIYVENV 161
>gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
4582]
gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
4582]
Length = 229
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + +
Sbjct: 13 NTVAGVNANRSVGGNTSQDL-HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QAS+ IG + I
Sbjct: 72 EKLNTTLGAISGQINSNQSLQASALIGHGVMVPGKDI 108
>gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda
EIB202]
gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda
EIB202]
gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda FL6-60]
Length = 232
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ ++ VN + + + + + L Q++FL LL+ Q+++QDPT P++ +E QLA S +
Sbjct: 11 VDTSSPVNASSKSGLVADNGQDL-QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QASS IG + +I
Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQASSLIGHGVMIPGKTI 109
>gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium
HF0770_45N15]
Length = 262
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 5 TEVNPTQQEFSKSKS--KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T TQQ + + + LG+ FL LL+TQ+ +QDPT+PMK + + Q+A +EQ
Sbjct: 11 TTAKSTQQNMTARGTADNRELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVEQ 70
Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI---SGVVNAIQVS 107
+N+ ++++ A ASS +G+++ S+ SGV +
Sbjct: 71 LQNLNAQTRQVIGLQKQIARASASSLLGRDVEVGSTSLSVQSGVTQPVSFK 121
>gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii
SS-2004]
gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
bovienii SS-2004]
Length = 231
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ V + K +D FL LL+ Q+K+QDPT PM+ +E QLA S ++
Sbjct: 13 NSTVGELATLNKQQPQKSGDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGV 72
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAIT-V 116
++N TL + ++ N Q + IG+ + I SG N I S G
Sbjct: 73 EKLNKTLGAVVGQMEGNQAMQTTMLIGRTVMIPGDKILVGSGEENGISTSPFGFELTRPA 132
Query: 117 DNTEIPITTGIRI 129
DN +I I +
Sbjct: 133 DNIKITIRDKEGV 145
>gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli
RM2228]
gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli
RM2228]
Length = 287
Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
Query: 77 NNLA----------QASSYIGKNITNADGSIS 98
L A IGK T +D I
Sbjct: 100 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKIK 131
>gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110]
gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110]
Length = 228
Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ +N S + FLKLL+TQ+ +QDP PM+ +E +QLA S +
Sbjct: 10 SGLNAATAASSAGNVSGADSEQRFLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIE 69
Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
++N+ L L+ N + QA+S IG N+ + ++S
Sbjct: 70 RLNTALSGLVNQTGANQVLQAASLIGYNVLSPGNALS 106
>gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter
upsaliensis RM3195]
gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter
upsaliensis RM3195]
Length = 274
Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKT-LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
NT N S + L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E
Sbjct: 20 NTTQNSGDNLTSNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALEM 79
Query: 63 SVQMNSTLQEL----------LKSNNLAQASSYIGKNITNADGSIS 98
N+T+Q++ + ++ A IGK T AD I
Sbjct: 80 QQNTNNTMQQMVAQMKKLSNAMGTSQSIGALGAIGKMATVADNKIK 125
>gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277]
gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277]
Length = 234
Score = 80.0 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q
Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQ 84
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSISGVVN 102
+L LK++ A +GK D SG+V
Sbjct: 85 KLADQLKNSTNMYAVGVLGKMAKIGD---SGIVK 115
>gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp.
SE45]
gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp.
SE45]
Length = 222
Score = 80.0 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+ S +K+ + + FLK+L TQ+++QDP P+ +E QLA FS +EQ V N
Sbjct: 14 SSSNTASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTND 73
Query: 69 TLQEL---LKSNNLAQASSYIGKN 89
L+EL + N + + +IGK
Sbjct: 74 LLKELTGVIGGNQFQELAGWIGKQ 97
>gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
Length = 245
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 28/156 (17%)
Query: 1 MEINTEVNPTQQEFSKSKSK--KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+ +++ S + ++L ++F+KLL TQ+++QDPT P S+ +AQLA FS
Sbjct: 16 LAVSSATGSGANSTSGTSGNGAESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFS 75
Query: 59 QMEQSVQMNST---LQELLKSNNLAQASSYIGK------------NITNADGSIS----- 98
++ Q+N+T Q L+S+ + QA++ +GK N T ADG+
Sbjct: 76 SLQGISQLNTTVNGFQSTLQSSQIMQAAALVGKAAIVKGDTAHMYNSTAADGTTKASGIL 135
Query: 99 GVVN------AIQVSSTGLTAITVDNTEIPITTGIR 128
G V+ ++ VS T + VD +P++ R
Sbjct: 136 GAVDIPTGATSVSVSITNASGQVVDTQSVPVSGSAR 171
>gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas
macleodii ATCC 27126]
gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas
macleodii str. 'Deep ecotype']
Length = 228
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
+++ L Q+ F +L Q+ +QDPT P+ + VAQ+ F+ + Q+N +
Sbjct: 23 ADGTEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAA 82
Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ SN QASS IG+N+ + G V + G++ + V+ +
Sbjct: 83 SMTSNQALQASSLIGQNVL-----VQGNVGYMANEGDGISGVIVNEKTV 126
>gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565]
gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565]
Length = 246
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELLK 75
KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ + L+
Sbjct: 25 PKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLMT 84
Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
S+ QAS+ +G+N+ +GSISGVV + ITV++ +
Sbjct: 85 SSQALQASALVGQNVLLPSNIGYLEKEGSISGVVAVGVENKYSNVKITVEDEK 137
>gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21]
gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21]
Length = 221
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78
Query: 75 KSNNLAQASSYIGKNITNADGSIS 98
++ A + IGK + +
Sbjct: 79 SNSATLAAVTLIGKQVEAPGSQLE 102
>gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida
GB-1]
gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1]
Length = 233
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
++ + + LG+DAFL+LL+TQ+K+Q+P +P + E VAQLA FS +E +N +
Sbjct: 23 SKNNSNTGAAGSALGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLNDS 82
Query: 70 LQEL---LKSNNLAQASSYIGKNI 90
+ + L+S+ QASS +G+N+
Sbjct: 83 VTYIAAGLQSSQALQASSLVGRNV 106
>gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica
OS223]
gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223]
Length = 256
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L
Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109
Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
++ S+ QAS +G+ + + +G ++A + G+ + EI +
Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159
>gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
Length = 218
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ L L
Sbjct: 23 TGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKNLASEL 82
Query: 75 KSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ L A+S+IGK++ +A G G V+ +S + N +
Sbjct: 83 TGSRLGDAASWIGKSMLIQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137
>gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
ATCC 49957]
gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
ATCC 49957]
Length = 226
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ T + + +K LG D +FL LL TQ+++QDP +P +SE QLA FSQ+
Sbjct: 6 LTTAASSANSTTQSATAKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQV 65
Query: 61 EQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
EQ + N+ L+ LL +S +L ++ +G + + I
Sbjct: 66 EQQIATNAHLESLLSLQQSASLLSSTGLVGNTVEVSSSQI 105
>gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium
wasabiae WPP163]
gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163]
Length = 224
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + +
Sbjct: 12 TRTQNTSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + +N QA++ IG+++ I
Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGRSVMVPGKEI 107
>gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda ATCC 23685]
gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
tarda ATCC 23685]
Length = 232
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ + VN + + + + + L Q+ FL LL+ Q+++QDPT P++ +E QLA S +
Sbjct: 11 VNTGSSVNASSKNGLVADNSQDL-QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QASS IG + +I
Sbjct: 70 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKTI 109
>gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32]
gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32]
Length = 221
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
L +D FL+L +TQ+++QDP P +S+ + QLA +++EQS N+ LQ +L +N
Sbjct: 24 LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83
Query: 80 AQASSYIGKNITNADGSIS 98
A S+IGK+I IS
Sbjct: 84 LSAVSFIGKSILAPGSQIS 102
>gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th
initiation of hook assembly) [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th
initiation of hook assembly) [Photorhabdus asymbiotica]
Length = 232
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V Q +K F++LLI Q+K+QDPT PM+ +E A LA + +E
Sbjct: 13 NTTVRELAQNSKTNKKNSEELNSNFMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGI 72
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+T+ + + +N Q S+ IG+ + +I
Sbjct: 73 EKLNTTVGSIVGQINNNQSLQVSALIGRGVMIPGDTI 109
>gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320]
gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320]
Length = 264
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E
Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+N T+ + + + +A+S + + A IS
Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110
>gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 234
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M +++ N + + + + + F+ LL+ Q+K+QDPT PM ++ +QLA F+
Sbjct: 1 MAVSSINNNSGAGGTGTGNSAADLSNQFMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMA 60
Query: 61 EQSVQMNST---LQELLKSNNLAQASSYIGKNI 90
++NS+ +Q ++ AS+++G+++
Sbjct: 61 AGVEKLNSSVAGVQAMMIQLGSMSASAWVGRSV 93
>gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601]
gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601]
Length = 224
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+E +K+ + + + FLK+L TQ+++QDP P+ +++ QLA FS +EQ V N L
Sbjct: 23 EEQTKNAAVLSSDFETFLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVLTNDLLG 82
Query: 72 ELLKSN---NLAQASSYIGKNI 90
+L ++ L Q S+IG+++
Sbjct: 83 DLAQAMTGGTLQQLGSWIGRDV 104
>gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023]
Length = 140
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ M + +
Sbjct: 14 TNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAV 73
Query: 71 QEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD-NTEIPI 123
+L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D ++ +P+
Sbjct: 74 DKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQDSLVPM 133
Query: 124 TTGIRI 129
T I
Sbjct: 134 TYVTEI 139
>gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii
DSM 12804]
gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii]
Length = 231
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 3 INTEVNPT----QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+N + T Q + S ++L QD FL LL+TQ+K+QDP PM+ +E +QLA S
Sbjct: 4 VNNSTDSTGLALAQSGVGANSAQSL-QDRFLTLLVTQLKNQDPLNPMENAELTSQLAQIS 62
Query: 59 QMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
+E + +TL + + A S IGK + IS
Sbjct: 63 TVEGITNLKNTLLAISGQIDVSQSMNAVSMIGKGVLIPGEKIS 105
>gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
Length = 217
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 4 NTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
N V T+ KT ++ F++LL Q+K+QDP+ P +++ VAQ+A FS +EQ
Sbjct: 21 NGVVTGTKTANGTKIVDGKTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQ 80
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117
+N+T+ + A++ +GK + I+G V + +
Sbjct: 81 MTNLNTTMT-------FSSANNLVGKTVVTKYTDEKGNYITGTVAGTTQKDGNVYLLLDS 133
Query: 118 -NTEIPITTGIRIS 130
+ + ++ + +
Sbjct: 134 ADGKFTMSDILSVE 147
>gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
Length = 234
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q
Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQ 84
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97
+L LK++ A S +GK D I
Sbjct: 85 KLADQLKNSTNMYAVSVLGKMAKIGDSGI 113
>gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua
Clip11262]
gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262]
gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378]
Length = 140
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ
Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117
M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D
Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127
Query: 118 NTEIPITTGIRI 129
++ +P+T I
Sbjct: 128 DSLVPMTYVTEI 139
>gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp.
SK209-2-6]
gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp.
SK209-2-6]
Length = 228
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 2 EINTEVNPTQ-----QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
E+++ PT S + T D F+KLL Q ++QDP EPM +E +QLA
Sbjct: 4 EVSSVFTPTSTGANSSPASTGGTNLTSDFDTFIKLLTAQAQYQDPLEPMDNTEYASQLAE 63
Query: 57 FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
FS +EQ V N+ L + L N+A + ++G + + N + V+
Sbjct: 64 FSMVEQQVLTNTNLSTVHEQLGLGNMASLTGWVGMEVRAPAPAQFDGTNPVNVAPN 119
>gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 31758]
gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 31758]
Length = 228
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + SN
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91
Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103
A+S IG+ + GS G V+
Sbjct: 92 ATSLIGRGVMVPGTNIFTGSTDGTVST 118
>gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas
sp. SM9913]
gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas
sp. SM9913]
Length = 225
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++ K + L Q+ F LL Q+ +QDP++P + +AQ+ F+ E +NS
Sbjct: 19 DKQVPKKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSNF 78
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSS 108
+ L + SN+ QAS+ +GK ++ SG V V+
Sbjct: 79 ESLAASMTSNSALQASTLVGKQALLESDTLELNESGEVKGAIVAE 123
>gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253]
gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia
fergusonii ECD227]
Length = 231
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ + T S + Q +FL LL+ Q+K+QDPT PM+ +E +QLA S +
Sbjct: 9 DASNNGVSTTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QASS IG + +I
Sbjct: 69 GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107
>gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246]
Length = 120
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
S + + +GQD FL+LLI Q+++QDP +P+ + + QLA + + +N+ E+
Sbjct: 2 ASGTSALAGVGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEM 61
Query: 74 LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
LK + Q + +GK I + + +G V ++Q S G + V + ++ + +
Sbjct: 62 LKLQQITQGADLVGKTIEYTLTGEPAKTGKVTSVQ-SQDGKFVLQVGSDQVLLDQINSV 119
>gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
Length = 238
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQAS 83
+ FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L L+ +S NL A+
Sbjct: 26 ETFLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGVEQQLLTNDLLTSLVAAQSGNLNNAA 85
Query: 84 SYIGKNITNA 93
+YIGK +T A
Sbjct: 86 AYIGKEVTAA 95
>gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella
bronchiseptica RB50]
gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella bronchiseptica
RB50]
Length = 234
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ +
Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77
Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+++Q A S IGK + +S + + G T +D
Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123
>gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
Length = 230
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + L S+ Q
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93
Query: 82 ASSYIGKNITNADGSI-SGVVNAI 104
AS+ IG + SI SG + +
Sbjct: 94 ASTLIGHGVMIPGTSILSGTKDGV 117
>gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72]
gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp.
BH72]
Length = 224
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQ 81
++ FL LL TQ+++QDP PM+ +E +QLA S +E ++NS + +LL+S Q
Sbjct: 33 KNQFLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEKLNSMMTQLLQSQASAEGLQ 92
Query: 82 ASSYIGKNITNADGSIS 98
A++ +G+ + +++
Sbjct: 93 AAALVGRGVLVEGKNLT 109
>gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. doylei 269.97]
gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 287
Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 41 SNPNATLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100
Query: 77 NN----------LAQASSYIGKNITNADGSIS 98
A IGK T + +
Sbjct: 101 MQKLSDSFSASMSTSALGAIGKMATVNENKVK 132
>gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica
OS155]
gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155]
Length = 256
Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L
Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109
Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++ S+ QAS +G+ + + +I GV++ + + ++
Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISAESPTIKGVISTPSKIPELSVRVEDEKGQVVA 169
Query: 124 TTGIRISN 131
T + S+
Sbjct: 170 TFKVDGSD 177
>gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 216
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + +
Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N ++Q + + Q + IG+N+ ++
Sbjct: 66 IQQLNLSMQTMAEQFTTMQTLQGTMMIGRNVLTEGSKMT 104
>gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18]
gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18]
Length = 221
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ N+ LQ LL
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78
Query: 78 N---LAQASSYIGKNITNADGSIS 98
+ A S IGK + +
Sbjct: 79 SNAGTLAAVSLIGKQVEAPGSQVE 102
>gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
M1]
gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
jejuni 327]
Length = 294
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
Query: 77 NN----------LAQASSYIGKNITNADGSIS 98
A IGK T +D I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131
>gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter jejuni
RM1221]
gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221]
gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter
jejuni subsp. jejuni S3]
gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
jejuni 305]
Length = 294
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
Query: 77 NN----------LAQASSYIGKNITNADGSIS 98
A IGK T +D I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131
>gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi
ATCC 51908]
gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908]
Length = 270
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L
Sbjct: 64 PEPNNQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDEIVNLNT 123
Query: 73 LLKSNNLAQASSYIGKNITNADGS 96
++ S+ QAS +G+ + +
Sbjct: 124 VMTSSQALQASGLVGQKVLIPSDT 147
>gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
Length = 227
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+N T + S + QD F+KLL+TQ+K+QDP PM ++ +Q+A S + ++
Sbjct: 18 LNGTSSTSTASATSAAASQDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSGIDKL 77
Query: 67 NSTLQELLKS---NNLAQASSYIGKNITNADG 95
N+TLQ L S N QA++ IG+ +
Sbjct: 78 NATLQALSASMTPNQTLQAATMIGRGVLVTGN 109
>gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
Length = 216
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + +
Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N ++Q + + Q + IG+++ ++
Sbjct: 66 IQQLNLSMQTMAEQFSTMQTLQGTMMIGRSVLTEGSKMT 104
>gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC
43553]
gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC
43553]
Length = 232
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+ Q + S + + L QD FLKLL TQ+++QDP PM+ +E +QLA + +E +
Sbjct: 13 LAQAQSNANNSVTSQGL-QDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVEGISNL 71
Query: 67 NSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
ST+Q + + A S IGK + I V+ + T +D
Sbjct: 72 KSTIQAISGQIDVSQSMNAVSMIGKGVLIPGNKIKLGVDGDNAAERVATPYGLDLQSDAQ 131
Query: 124 TTGIRISN 131
IRI++
Sbjct: 132 KVQIRIAD 139
>gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
Length = 279
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+K+KS+ +D FLK+++TQ+++QDPT+PM+ +E +QLA + +E +++ + +
Sbjct: 27 NKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATLESMNKLSDKVSGIS 86
Query: 74 --LKSNNLAQASSYIGKNITNADGSI 97
+ S QA+ +GK + I
Sbjct: 87 SQIGSGQSLQATQLVGKGVLIPRNEI 112
>gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 224
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
V T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + +
Sbjct: 12 NSVQSTSSTTAIEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + +N QA++ IG ++ I
Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGHSVMIPGKDI 107
>gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile
QCD-66c26]
gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile
CIP 107932]
gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile
QCD-76w55]
gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile
QCD-97b34]
gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile
QCD-37x79]
gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile
CD196]
gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile
R20291]
gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile
QCD-32g58]
gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile
CD196]
gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile
R20291]
Length = 202
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+
Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98
Query: 65 QMNSTLQELLK-------SNNLAQASSYIGK-----NITNADGSISGVVNAIQVSSTGLT 112
MN L LL ++ L+ A+S IGK D +I GVV + + +
Sbjct: 99 AMNDKLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVH 158
Query: 113 A-ITVDNTEIPIT 124
+ VD ++ +
Sbjct: 159 LELEVDGSDKTVG 171
>gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
Length = 235
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
++ T + K + + ++AF K+L ++ +QDP+ +E V+Q+A FS +EQ
Sbjct: 18 DSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQFSSLEQM 77
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSI-SGVVNAIQVSSTGLTAITVDN 118
V +N+T++ L A++ IGK + + +G SG+V+++ S + +
Sbjct: 78 VNLNTTMK-------LTGANNLIGKTVNLNKLDPNGKFYSGLVSSVVKSGDTVQLNVLVG 130
Query: 119 TE 120
T+
Sbjct: 131 TK 132
>gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2]
gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena
XCL-2]
Length = 227
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 4 NTEVNPTQQEFSKSKSK---KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
NT+ Q+ + KS + LGQ FL+LL TQ+++QDP +PM + V L SQ+
Sbjct: 10 NTDYMKALQQSTNGKSNAPDQQLGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQL 69
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
E + +MN ++ + L++ + Q++S IGKN+ ++S
Sbjct: 70 EATTKMNQSMLAMTTGLQNMQVMQSASLIGKNVQAIGDTMS 110
>gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2]
Length = 229
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
+++ L Q+ F +L Q+ +QDPT+P+ + VAQ+ F+ + Q+N + +
Sbjct: 26 GTEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAASM 85
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
SN QASS IG+N+ + G V + + G++ + V+ +
Sbjct: 86 TSNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVNEQSV 127
>gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20]
gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20]
Length = 286
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 39 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 98
Query: 77 NNLA----------QASSYIGKNITNADGSIS 98
L A IGK T +D I
Sbjct: 99 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKIK 130
>gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis YPIII]
gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis PB1/+]
gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 32953]
gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII]
gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+]
Length = 228
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91
Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103
A+S IG+ + GS G V+
Sbjct: 92 ATSLIGRGVMVPGTNIFTGSTDGTVST 118
>gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3]
Length = 224
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61
+ + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++
Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116
Q + ++ A+ +GK +T + DG+ +SGV + +S + + V
Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGS-DVKVVV 120
Query: 117 DNTEIPITTGIRISN 131
D + ++ IS+
Sbjct: 121 DGKQYDLSAVKAISD 135
>gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
Length = 224
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61
+ + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++
Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116
Q + ++ A+ +GK +T + DG+ +SGV + +S + + V
Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVNISGS-DVKVVV 120
Query: 117 DNTEIPITTGIRISN 131
D + ++ IS+
Sbjct: 121 DGKQYDLSAVKAISD 135
>gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
Length = 282
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79
LGQDAFL + + Q+ +Q+P +PM +E AQLA FSQ+E+ Q+ +++ +L S +
Sbjct: 28 LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87
Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+ A Y+GK +T +SG V + G +D
Sbjct: 88 SVALGYLGKEVT-----VSGNVMPVIDGEAGEMGFYLD 120
>gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella
frigidimarina NCIMB 400]
gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400]
Length = 261
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N
Sbjct: 50 EESAIPESKDQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLNDEI 109
Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGS 96
L ++ S+ QAS +G+ + +
Sbjct: 110 LNLNTVMSSSQALQASGLVGRKVLIPSDT 138
>gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a]
Length = 224
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME- 61
+ + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++
Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNIT----NADGS-ISGVVNAIQVSSTGLTAITV 116
Q + ++ A+ +GK +T + DG+ +SGV + +S + + V
Sbjct: 70 QQDNLKYSMSN--------YAAGLVGKTLTMNAQSDDGTLLSGVCTGVSISGS-DVKVVV 120
Query: 117 DNTEIPITTGIRISN 131
D + ++ IS+
Sbjct: 121 DGKQYDLSAVKAISD 135
>gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
Length = 234
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
Q+ FLKL I Q+K QDPT P ++ VAQ++ FS +E+ ++ L+ + L SN
Sbjct: 42 DQNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQAL 101
Query: 81 QASSYIGKNITNADGSIS--GVVNAIQVSST 109
AS+ +GK+I + V A+Q+ +T
Sbjct: 102 SASTLVGKSILMDGSKVKVGDNVEAVQLKAT 132
>gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 294
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
Query: 77 NN----------LAQASSYIGKNITNADGSIS 98
A IGK T +D I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131
>gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica
OS185]
gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica
OS195]
gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185]
gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195]
gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678]
Length = 256
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L
Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109
Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
++ S+ QAS +G+ + + +G ++A + G+ + EI +
Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159
>gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 232
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QA++ IG + +I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum
gryphiswaldense MSR-1]
Length = 226
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
E + S ++ D FL +L Q+K+QDP PM ++E QL FS +EQ +
Sbjct: 7 ESTGASNNAANSGTRLAENFDTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIA 66
Query: 66 MNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
N L+ L+ ++N AQA +YIG I A ++
Sbjct: 67 SNKNLENLISVTQTNTKAQAIAYIGHTIEVAASAV 101
>gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter jejuni
subsp. jejuni IA3902]
Length = 294
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S L +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 40 SNPNAALDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99
Query: 77 NN----------LAQASSYIGKNITNADGSIS 98
A IGK T +D I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKIK 131
>gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter
litoralis KT71]
gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter
litoralis KT71]
Length = 232
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + S + + FL L++ ++++QDPT P S+ + QLA F + ++N+
Sbjct: 14 STPLGNEAANSIDEMDAEDFLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNA 73
Query: 69 T---LQELLKSNNLAQASSYIGKNITNAD--GSISGVVNA 103
+ L L QA+S +G+++ G ++G NA
Sbjct: 74 SFGGLSSALTGGQALQAASLVGRSVMTDSNLGQLTGAANA 113
>gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica
OS145]
gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica
OS145]
Length = 227
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E + ++ L Q+ F KLL Q+ QDPT+P+ + ++Q+ FS E Q++S +
Sbjct: 22 EAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFTQ 81
Query: 73 L---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ SN QAS+ +G+++ + G+ +G + A++ S G T +T+ +
Sbjct: 82 FTQNMSSNQALQASTMVGRDVLVPSNKTFVESGGTATGAI-ALEQSGYG-TKVTIKDKVG 139
Query: 122 PITTGIRISN 131
+ I + +
Sbjct: 140 QVVDVIDLGD 149
>gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia
fergusonii ATCC 35469]
gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469]
Length = 231
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V+ T + L Q +FL LL+ Q+K+QDPT PM+ +E +QLA S +
Sbjct: 12 NNGVSNTSNNSLTGGNAADL-QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGI 70
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QASS IG + +I
Sbjct: 71 EKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107
>gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J]
gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D]
gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J]
gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D]
Length = 215
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T T + S + T Q+ F++LL+ Q+++QDP PM S+ +QLA + +
Sbjct: 7 TSTPSTNTSNNLSITSGTDLQNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQ 66
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
Q+N+T+ + N QASS IG+ + +++
Sbjct: 67 QLNTTMSSMATQNAATQASSLIGRTVQVPSSTLT 100
>gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas
haloplanktis TAC125]
gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly
[Pseudoalteromonas haloplanktis TAC125]
Length = 225
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+++ + L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS
Sbjct: 19 EKQAASKDKSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTSFTMAEGISNLNSNF 78
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97
+ L + SN+ QAS+ +GK ++
Sbjct: 79 EALAASMTSNSALQASTLVGKQALLESDTL 108
>gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative
[Roseobacter litoralis Och 149]
gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative
[Roseobacter litoralis Och 149]
Length = 226
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 7 VNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ PT Q + S + + FLK+L Q + QDP EP+ +SE AQLA FS +EQ
Sbjct: 9 IQPTTQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQ 68
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKN 89
V N L EL L SN++ Q +++IG
Sbjct: 69 VLSNDLLTELGAQLGSNSIGQMAAWIGME 97
>gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella pertussis
Tohama I]
gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis
Tohama I]
gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella pertussis
CS]
Length = 234
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ +
Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77
Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+++Q A S IGK + +S + + G T +D
Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGID 123
>gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis KIM
10]
gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis
biovar Microtus str. 91001]
gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis
Antiqua]
gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis
Nepal516]
gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis
Pestoides F]
gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis
CA88-4125]
gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis
FV-1]
gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis
CO92]
gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
A]
gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003]
gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10]
gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Microtus str. 91001]
gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis Antiqua]
gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92]
gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
F]
gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis
CA88-4125]
gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
A]
gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis D106004]
gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis D182038]
gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003]
gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 225
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88
Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103
A+S IG+ + GS G V+
Sbjct: 89 ATSLIGRGVMVPGTNIFTGSTDGTVST 115
>gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
Length = 219
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN--NLAQA 82
+ FL LL Q+K+QDP PM ++E +QL +S +EQ ++ N L L+ + +L+ A
Sbjct: 28 YETFLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSA 87
Query: 83 SSYIGKNITNADGSIS 98
+YIGK+IT + +
Sbjct: 88 VNYIGKSITADTNTTT 103
>gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis
Angola]
gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
Length = 225
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+
Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88
Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103
A+S IG+ + GS G V+
Sbjct: 89 ATSLIGRGVMVPGTNIFTGSTDGTVST 115
>gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 232
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QA++ IG + +I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter
salexigens DSM 3043]
gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM
3043]
Length = 235
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ N + + + + F+ LLITQ+++QDPT+PM S+ AQLA + +
Sbjct: 14 INSTPNANASNETRTTGAESSEDLNNRFMTLLITQLQNQDPTKPMDNSDMTAQLAQINTV 73
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N +L ++ + + QASS IG+ + ++
Sbjct: 74 SGIQELNDSLGDINEQIDAGKTLQASSLIGQGVMVPGSTV 113
>gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea
DSS12]
gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea
DSS12]
Length = 235
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N L
Sbjct: 29 PEANSQGLSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLNDEIINLNT 88
Query: 73 LLKSNNLAQASSYIGKNITNADGS 96
++ S+ QAS +G+ + +
Sbjct: 89 VMTSSQALQASGLVGQKVLIPSDT 112
>gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD
gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD
gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 232
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QA++ IG + +I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium
'Dutch sediment']
Length = 234
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 16/112 (14%)
Query: 1 MEINTEVNPTQQE------FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQL 54
MEI T Q + S + LG+DAFLKLL+ Q+++Q+P P++ ++ +AQ
Sbjct: 1 MEITNGSTTTVQSPQGAGAATSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQT 60
Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQ---------ASSYIGKNITNADGSI 97
A F+ +EQ Q+N+++ +L S+ ASSYIGK +T A+G+I
Sbjct: 61 AQFTSLEQLQQINASIAQLSASSAATSGSNSLDAVLASSYIGKVVT-ANGTI 111
>gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
Length = 285
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 5 TEVNPTQQEFSKSKSKKT-------LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
T+ + T Q S + L +DAFLKLL+ +++HQDPT+PM + + + Q +
Sbjct: 16 TKTDNTTQNNGGSLTPNNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQL 75
Query: 58 SQMEQSVQMNSTLQEL----------LKSNNLAQASSYIGKNITNADGSIS 98
+ +E N+T+Q++ + ++ A IGK T AD I
Sbjct: 76 AALEMQQNTNNTMQQMVAQMEKLSNAMGTSQSIGALGAIGKMATIADNKIK 126
>gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 242
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL---QELL 74
KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ + L+
Sbjct: 23 APKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLM 82
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
S+ QAS+ +G+N+ +GSI GVV + ITV++ +
Sbjct: 83 TSSQALQASALVGQNVLLQSNVGFLENEGSIGGVVAVGVENKYTSVKITVEDEK 136
>gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519]
gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii]
Length = 128
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N ++ + LG+DAFL+LL TQ+ HQDP P E ++Q+A FS +EQ +
Sbjct: 15 TNTGTEKNYTRQVNSELGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQNL 74
Query: 67 NSTLQELLKSNNLAQ 81
N++ L K+ Q
Sbjct: 75 NTSFAGLDKTMQDTQ 89
>gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas
neptunium ATCC 15444]
gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas
neptunium ATCC 15444]
Length = 216
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLAQ 81
++F+KLL Q+++QDP PM +++ V QLA FS +EQ V N+ L ++ N
Sbjct: 27 YNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGLM 86
Query: 82 ASSYIGKNITNAD 94
AS ++G+++T A
Sbjct: 87 ASQWLGEDVTFAS 99
>gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
centenum SW]
gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
centenum SW]
Length = 309
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83
+ FL+LL Q+K+QDP +P + SE QL FSQ+EQ + NS L L QA+
Sbjct: 33 NYETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQAT 92
Query: 84 ---SYIGKNI-------------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
YIGK + T I G V + + + V+ + + G
Sbjct: 93 VALQYIGKTVELEPSGIPLLPGGTTVSYDIDGEVRSATLVISDKDGNIVNTQSVQVRPG 151
>gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella
denitrificans OS217]
gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 263
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++K ++L Q F LL Q+ QDP +P+ + + Q+A FS ++ ++N
Sbjct: 51 PTESAIPEAK-DQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNE 109
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
L + S+ QAS +G+ + +G +++ S G+ + ++I +
Sbjct: 110 EILNLTSVTSSSQALQASGLVGRKVLIPSD--TGYLSSESPSINGVISTPEKISDITVR 166
>gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
Length = 220
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E
Sbjct: 8 NNPVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67
Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89
M ++++ + Q++S IGKN
Sbjct: 68 EGMRKNQSNQMIMMENLGIVQSASLIGKN 96
>gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36]
gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36]
Length = 237
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E + S+K LGQ+ F LL ++ QDP +P++ SE VAQ+A F+ + M S ++
Sbjct: 26 EQAAESSRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKFEQ 85
Query: 73 L---LKSNNLAQASSYIGKNI--------TNADGSISGVVN 102
L + SN QASS +G + +A S+SG +
Sbjct: 86 LTTIMSSNQALQASSLVGTKVLAPASTAFLSAGESVSGRIE 126
>gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella
parapertussis 12822]
gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella parapertussis]
Length = 234
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S S QD FL LL+TQ+++QDP PM+ +E +QLA S +E + +T+ +
Sbjct: 18 AGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAIS 77
Query: 75 KSNNLAQ---ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+++Q A S IGK + +S + + G T +D
Sbjct: 78 GQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123
>gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
HTCC2516]
gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
HTCC2516]
Length = 222
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
S + FLK+L Q+ +QDP PM +S V QLA SQ+EQ+VQ N L+ELL
Sbjct: 20 SNAAMDSNYQNFLKMLTAQVTNQDPLAPMDSSTFVTQLAQLSQVEQTVQSNGHLRELLAG 79
Query: 77 NNLAQASS---YIGKNITNADGSIS 98
+ + IGK +T A IS
Sbjct: 80 VQSFGSMAEVQLIGKPVTYASDRIS 104
>gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42]
gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42]
Length = 216
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q +
Sbjct: 17 SANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTM 76
Query: 74 ---LKSNNLAQASSYIGKNITNADGSIS 98
+ Q S IG+++ +S
Sbjct: 77 AEEFSTMQQIQGISLIGRSVLTEGDRLS 104
>gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 232
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QA++ IG + +I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus
525.92]
gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92]
Length = 235
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + L +DAF+KLL+T++++QDPT PM + + Q + + +E NST+++L
Sbjct: 30 TTGANPNSQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMRQL 89
Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108
L+SN A A S +GK ++ +++ + ++SS
Sbjct: 90 VAQLQSNANAYAISALGKMVSTGSNAVNITDDTKEISS 127
>gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
Length = 224
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+P +++ + + Q FL++L Q++HQDP EPM+ +E +QLA F + Q
Sbjct: 13 YDPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQNS 72
Query: 67 NSTLQELLK-----SNNLAQASSYIGKNITNADGSIS 98
LQ+L++ ++ + QA +YIG+ + +++
Sbjct: 73 TQLLQQLVELMSGGTDQVGQAVAYIGREVLVEGNTLT 109
>gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella
oneidensis MR-1]
gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis
MR-1]
Length = 253
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
+ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 42 SNSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQI 101
Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L ++ S+ QAS +G+ + + I S GL + + +IP+ I
Sbjct: 102 VNLNSVMTSSQALQASGLVGRKVLLPTDT-----GYISAESPGLNGVISTSEKIPVIN-I 155
Query: 128 RISN 131
RI +
Sbjct: 156 RIED 159
>gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
Length = 222
Score = 78.0 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + + ++S+S D FL LL Q+++QDP EP ++E QL FS +EQ +
Sbjct: 9 NQSSGSTSNSAQSQSALASDFDTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQI 68
Query: 65 QMNSTLQELLKSNNLAQA---SSYIGKNI 90
Q N L++L+ SNN A SSY+G+++
Sbjct: 69 QTNDALEQLIASNNSATGAAMSSYLGQSV 97
>gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter
concisus 13826]
gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826]
Length = 235
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+ + L +DAF+KLL+T+++HQDPT PM + + Q + + +E N ++EL
Sbjct: 31 TGTNPNSQLDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAMKELV 90
Query: 74 --LKSNNLAQASSYIGKNITNADGSIS 98
LKSN A A S +GK ++ +++
Sbjct: 91 NQLKSNANAYAISALGKMVSTGSNAVT 117
>gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692]
gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692]
Length = 227
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
Q +LG+ FL LL+TQ+++QDP P +E AQLA FS +EQ +
Sbjct: 13 AQSVQSPERTGSQDDSLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSLEQLTNI 72
Query: 67 NSTLQ---ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
+ +++ + + A S +G+N+ + + +Q+
Sbjct: 73 SESMEGLDAMKTAYEQNAALSMLGRNVQLEGNTFTFQNEPVQL 115
>gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus
mobilis Nb-231]
gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus
mobilis Nb-231]
Length = 221
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
+ + + QD FLK+++ Q+++Q+P +PM E + Q+A F+ Q+ S+ Q
Sbjct: 18 APKPATNEVSQDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFTSASGIEQLQSSFQAFQ 77
Query: 74 --LKSNNLAQASSYIGKNI 90
++SN QA+S +G+ +
Sbjct: 78 TNMQSNLALQAASLVGRQV 96
>gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
Length = 216
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q +
Sbjct: 17 SANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGIQTLNLTMQTM 76
Query: 74 ---LKSNNLAQASSYIGKNITNADGSIS 98
+ Q S IG+++ +S
Sbjct: 77 AEEFSTMQQIQGISLIGRSVLTEGDRLS 104
>gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
Length = 221
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L
Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78
Query: 75 KSNNLAQASSYIGKNITNADGSIS 98
++ A + IGK + +
Sbjct: 79 SNSATLAAVTLIGKQVEAQGNQLE 102
>gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
Length = 237
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ N ++ + + S ++F+ LL+ Q+++QDPT PM ++ +QLA FS
Sbjct: 6 VMNSNNAAPKDGASNGSNPEDLTNSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASG 65
Query: 63 SVQMNST---LQELLKSNNLAQASSYIGKNI 90
Q+NST + L+ S A+ ++G+ +
Sbjct: 66 VQQLNSTVMAVGSLVTSMQQMNAADWVGRQV 96
>gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
Length = 219
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++ + + + + + FL LL TQI++QDP +P+ ++E QL +S +E
Sbjct: 3 QVTGATSAASSGTTSASQSLSSNYELFLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVE 62
Query: 62 QSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98
Q++Q N L +++++ QASS YIG +IT + G+ +
Sbjct: 63 QAIQSNQHLAKMVEAMQAGQASSYVNYIGSDITASGGTAT 102
>gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
Length = 232
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
T VN S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 TTGVNAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QAS+ IG + +I
Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108
>gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis
biprosthecum C19]
gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis
biprosthecum C19]
Length = 218
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ T TQ +K + FL LL QI++QDP PM ++E QL +S +
Sbjct: 2 VDAVTSNATTQTTATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSV 61
Query: 61 EQSVQMNSTLQELLKS----NNLAQASSYIGKNITNADGSIS 98
EQ ++ N L+++ K+ + + A +YIGK ++ + +
Sbjct: 62 EQQLKGNDYLEKISKALDGGDTMNTAVNYIGKTVSAGTATAT 103
>gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601]
gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601]
Length = 223
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
V S S S+ + ++F+ LL QI++Q+P EPM ++ ++QLA SQ+EQS
Sbjct: 8 TGNVTGAGTTASSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQS 67
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNA 93
V +N L+ + L S + + IG+++
Sbjct: 68 VAVNDNLEGISSQLSSMSAIAGLNLIGRSVVAP 100
>gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 232
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + + Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGNNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QA++ IG + +I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
Length = 220
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ S K LG+ FL+LL+ Q+++QDP EP +E +AQLA FS +EQ N+ L ++
Sbjct: 18 ATASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVIS 77
Query: 76 SNNLAQ---ASSYIGKNITNADGSI 97
+ Q +GK + +
Sbjct: 78 ATADMQQLAGIDMLGKTVVAQSDNF 102
>gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
Length = 226
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ S + + D FLKLL TQ++HQDPT PM + + QL S +EQS+Q N L+
Sbjct: 18 KSSTASAALAGNFDTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLET 77
Query: 73 LLKSN---NLAQASSYIGKNITNAD 94
L+ +N N +Q+ S +GK +T +
Sbjct: 78 LITANAIQNASQSVSLLGKEVTGSG 102
>gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii
DFL-11]
gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii
DFL-11]
Length = 196
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
+ FL +L TQI++QDP +P+ ++E QL +S +EQS+Q N L+E+ L SN +
Sbjct: 4 NYELFLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSS 63
Query: 81 QASSYIGKNITNADGS 96
+YIG +T A G+
Sbjct: 64 AYVNYIGTEVTAAGGT 79
>gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
Length = 236
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+++ + + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T+
Sbjct: 34 TGAKAQAVTDPSAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTM 93
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q + + + Q ++ +G+++ ++S
Sbjct: 94 QRMAAQFDALQVMQGAALVGRSVMTEGSALS 124
>gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas
tunicata D2]
gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas
tunicata D2]
Length = 240
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+++ + ++ ++ L Q F L+ Q+ QDP P +AQ+ S E
Sbjct: 14 VDSLRSTKDEKIQTAEEANELSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEG 73
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
M + + + SN QASS +G+N+
Sbjct: 74 VSNMATKFDQFAVSMTSNQALQASSLVGRNV 104
>gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
Length = 222
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ + + + T ++ FL L++ QI++QDP P+ +E V QLA FSQ+E +
Sbjct: 14 TSADPQVTNNPNSSTALKNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVESLEHLR 73
Query: 68 STLQE---LLKSNNLAQASSYIGKNITNADGSI---SGVVNAIQVSSTGLTAITVDNTE 120
Q L+++ + ++ IG+ + S+ + VN G+ ++T++ T+
Sbjct: 74 LGQQNQAILMENLQVLGTTNLIGREVLVDADSVELGTDTVNGKIFLENGVESLTLEVTD 132
>gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium
atrosepticum SCRI1043]
gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum
SCRI1043]
Length = 224
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 4 NTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ + TQ S + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + +
Sbjct: 8 TSSASSTQGLSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTV 67
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + +N QAS+ IG ++ I
Sbjct: 68 SGIEKLNTTLGSISGQINNNQSMQASTLIGHSVMIPGKDI 107
>gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
Length = 223
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ
Sbjct: 8 LNNFTSSNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67
Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
+VQ N+ L+ L + + +G+++T +
Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105
>gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155]
gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155]
Length = 220
Score = 77.7 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E
Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67
Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89
M ++++ + Q++S IGKN
Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKN 96
>gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 232
Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+ L + + ++ QA++ IG + +I
Sbjct: 72 EKLNTMLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108
>gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175]
gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175]
Length = 256
Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L
Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109
Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
++ S+ QAS +G+ + + ++ GV++ + + ++
Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISTESPTMKGVISTPSKIPELSVRVEDEKGQVVA 169
Query: 124 TTGIRISN 131
T + S+
Sbjct: 170 TFKVDGSD 177
>gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 227
Score = 77.7 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 35 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 94
Query: 82 ASSYIGKNITNADGSI 97
A++ IG ++ I
Sbjct: 95 ATTLIGHSVMIPGKDI 110
>gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
Length = 230
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--KSNNLAQAS 83
D FL LL TQ+K+QDP P+ +++ Q+ + +EQ + N L+ L+ SN ++ A
Sbjct: 25 DTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGVEQQLLTNDLLKSLVSNTSNGVSTAV 84
Query: 84 SYIGKNITNA 93
S IGK + A
Sbjct: 85 SLIGKEVRAA 94
>gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14]
gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14]
Length = 241
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L +
Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
SN QASS +G+++ +++G +SG+ Q + + + E+
Sbjct: 93 TSNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQSVDNAMLRVENEQGEL 147
>gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175]
gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183]
gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175]
Length = 220
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E
Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67
Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89
M ++++ + Q++S IGKN
Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKN 96
>gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586]
gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586]
Length = 223
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90
Query: 82 ASSYIGKNITNADGSI 97
A+S IG + ++
Sbjct: 91 AASLIGHGVLVPGSTV 106
>gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens
QYMF]
gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens
QYMF]
Length = 134
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ K K+ L +DAFLKLL+TQ+ +QDP PM+ E ++Q+A FS +EQ +N L+
Sbjct: 15 EPNEKKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLK 74
Query: 72 E 72
+
Sbjct: 75 D 75
>gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688]
gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688]
Length = 218
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + S S S + QD F+ LLITQ+K QDP PM ++ +QLA S +
Sbjct: 6 NDLLTTMNTRKSSSGSSASDVQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65
Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
++N+T++ ++ +S+ QAS+ IG+ + S++
Sbjct: 66 DKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103
>gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T T + K + + ++AFL +L ++ + DP +++ V Q+A F+ MEQ
Sbjct: 9 TGARATDRGTQIVKPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASMEQMT 68
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108
+N+T+ ++ + + + K++ + +G+V ++ +S
Sbjct: 69 NLNTTMSSYAHNSMVGKGVTL--KSVDSEGKPYTGIVKSVTSTS 110
>gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor
[Magnetospirillum gryphiswaldense MSR-1]
Length = 220
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80
D F++LL Q+++QDP +P A+E QL +S +EQ + N L E+L S +++
Sbjct: 25 DYDMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMS 84
Query: 81 QASSYIGKNITNADGSIS----GVVNAIQVSSTGLTAITV 116
Y+G + +IS G V+A V S A V
Sbjct: 85 SGVGYMGHTVEAEGDTISVQDDGTVDAAWVYSLDSAATDV 124
>gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
Length = 205
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
S K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ +
Sbjct: 62 ASDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNA 114
Query: 78 NLAQASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+S +GK +T A ++ GVVN + + G I V+ + + I
Sbjct: 115 KSTYVTSLVGKTVTAAKFTVAGDLKKTEGVVNKVSLL-DGKFVIYVEGESYGMDEIMEI 172
>gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 224
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + + +N Q
Sbjct: 32 QNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQINNNQSMQ 91
Query: 82 ASSYIGKNITNADGSI 97
A++ IG ++ I
Sbjct: 92 ATTLIGHSVMIPGKDI 107
>gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae
bacterium KLH11]
gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae
bacterium KLH11]
Length = 221
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
++ T + FL++L Q ++QDP EP+ +SE +QLA FS +EQ VQ N+ L +L
Sbjct: 21 TQRAALTSDFETFLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSL 80
Query: 74 -LKSNNLAQASSYIGKNITN 92
L S NL Q +S++G ++
Sbjct: 81 TLGSVNLNQLASWVGMDVRT 100
>gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105]
gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105]
Length = 223
Score = 77.3 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ T + ++ Q+ F+ LL+ Q+K+QDP PM ++ +Q+A + +
Sbjct: 9 LGNNSGTTAAKKKTDENSPEAIQERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQLNTVTG 68
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
+N+T++ + S N QA+S +G+ + +
Sbjct: 69 INTLNATMEGVAASINANQTVQATSMLGRAVLTEGNDLK 107
>gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017]
Length = 229
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
Length = 241
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L +
Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92
Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
SN QASS +G+++ +++G +SG+ Q + + + E+
Sbjct: 93 TSNQALQASSLVGQDVLIPNSTAMRSSEGEMSGMTRLTQSVDNAMLRVENEQGEL 147
>gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
Length = 149
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N T + +K +L +DAFL++L ++++QDP EP +E V+Q++ FSQ+E +
Sbjct: 14 ANYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQIESLQTV 73
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
+ ++ E AS+ +GK + D +G I
Sbjct: 74 SDSISE-------QGASNLVGKRVILEDTDSAGNKKYIT 105
>gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
Length = 335
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
L +DAFLKLL+ +++HQDPT+PM + + Q A S +E N T+ +L+ +
Sbjct: 41 PGAELDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDAMT 100
Query: 79 LAQ----------ASSYIGKNITNAD 94
Q A + +GK T D
Sbjct: 101 KLQNSIAASTGMSALAAVGKLATVKD 126
>gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica
KT99]
gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica
KT99]
Length = 268
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
S + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L
Sbjct: 62 PEASSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDEIINLNA 121
Query: 73 LLKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAITVDNTEIPI 123
++ S+ QAS +G+ + + + GVV+ + T + I D ++
Sbjct: 122 VMTSSQALQASGLVGQKVLIPSDTGYLSEEGSVLKGVVSTPEAIETIVVRIEDDKGQLIT 181
Query: 124 TTGI 127
T I
Sbjct: 182 TFNI 185
>gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica
PV-4]
gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4]
Length = 260
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 49 EESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITKLNEEI 108
Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGS 96
L ++ S+ QAS +G+ + +
Sbjct: 109 VNLNTVMTSSQALQASGLVGQKVLIPSDT 137
>gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 225
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ S + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M
Sbjct: 20 TSAVADNPNSANDANGLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMA 79
Query: 68 STLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
+Q LL + + + +G+ + +
Sbjct: 80 KLMQNSMVLLDNMQVLSTAGLVGQTVYVEGNEVE 113
>gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter
denitrificans OCh 114]
gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative
[Roseobacter denitrificans OCh 114]
Length = 226
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 9 PTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
PT+Q + S + + FLK+L Q + QDP EP+ +SE AQLA FS +EQ V
Sbjct: 11 PTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVL 70
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKN 89
N L EL L SN++ Q +++IG
Sbjct: 71 SNDLLTELGAQLGSNSIGQMAAWIGME 97
>gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp.
R2A62]
gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp.
R2A62]
Length = 220
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 1 MEINTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
M+I+ +P Q K + + + FLK++ QI++QDP +P+ +++ QLA F
Sbjct: 1 MDISQLQSPGQLSSPAGEQIKPQISSDFETFLKMMTAQIENQDPLDPIDSADYAVQLATF 60
Query: 58 SQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89
S +EQ V+ N L L L+ + +A+ ++++G +
Sbjct: 61 SSVEQQVKTNDLLSALGGQLQLSGMAEMAAWVGMD 95
>gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L +
Sbjct: 33 TGKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLNSAM 92
Query: 75 KSNNLAQASSYIGKNITNADGS 96
SN QASS +G+++ + +
Sbjct: 93 TSNQALQASSLVGQDVLIPNST 114
>gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp.
ANA-3]
gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3]
Length = 259
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 47 PTSSAVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLND 105
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
L ++ S+ QAS +G+ + + I S GL + + +IP+
Sbjct: 106 QIVNLNSVMTSSQALQASGLVGRKVLLPTDT-----GYISAESPGLNGVISTSEKIPVIN 160
Query: 126 GIRISN 131
+RI +
Sbjct: 161 -VRIED 165
>gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
Length = 232
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N V S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NAGVKAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + ++ QAS+ IG + +I
Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108
>gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
Length = 223
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ
Sbjct: 8 LNNFTSTNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67
Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
+VQ N+ L+ L + + +G+++T +
Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105
>gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus
taiwanensis LMG 19424]
gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus taiwanensis
LMG 19424]
Length = 221
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S +
Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66
Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
MN+TL +LL + ++A ++ IG+ + ++
Sbjct: 67 MQTMNATLSQLLGQVSASRAMDSAALIGRTVMVPGKQVA 105
>gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601]
gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601]
Length = 145
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + +L +D F+KL +T +++QDP+ P+ ++ ++Q++ + MEQ M+S +
Sbjct: 18 DSNALTNAATNSLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAV 77
Query: 71 QEL---LKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTA-ITVDNTEIPI 123
+L +S+ + A +IGK+I +SG+V +IQ ++ G+ + ++T +P+
Sbjct: 78 NKLSDQAQSSAMQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPL 137
Query: 124 TTGIRISN 131
T ++N
Sbjct: 138 TYITEVNN 145
>gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
11128]
gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
11128]
gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180]
Length = 231
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli
H736]
gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736]
gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736]
Length = 231
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301]
Length = 642
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 232
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
M ++T + + + + F+KLL+ Q+++QDPT PM ++ +QLA F+
Sbjct: 1 MTVSTVNDTSGNTSTYGTGSSAADLSEQFMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNT 60
Query: 60 MEQSVQMNST---LQELLKSNNLAQASSYIGKNI 90
++N++ +Q L+ A+S++G+ +
Sbjct: 61 AAGVEKLNASVGNVQALMAQLGSMSAASWVGRGV 94
>gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae
Sd197]
gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae
1617]
gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197]
gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae
1617]
Length = 231
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVIIPGTTV 107
>gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya
dadantii 3937]
gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya
dadantii 3937]
Length = 223
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90
Query: 82 ASSYIGKNITNADGSI 97
A+S IG + +
Sbjct: 91 AASLIGHGVLVPGTKV 106
>gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
Length = 236
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ S LGQ FLKL+ITQ+ +QDPT P++ + +Q+A FS +
Sbjct: 21 NSTTGTAAGTASTGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGI 80
Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNI--------TNADGSISGVVN 102
++ S+ + L K +A++ +G+++ +A +SG V+
Sbjct: 81 EELTSSFETLSKTLLQGQTVEAATLVGQSVLVPASKADVSAGQKVSGAVD 130
>gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
Length = 231
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + + ++
Sbjct: 92 ASNLIGHGVMSPGTTV 107
>gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
BAA-613]
gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
BAA-613]
Length = 233
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + D FL L++ Q+K+QD P+ ++ V QLA S M+Q ++E+ +
Sbjct: 89 GDDKKVSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQ-------MEEMAYNA 141
Query: 78 NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ +S +GKN++ A ++S GVV I + G I VD + + I
Sbjct: 142 KSSYVASLVGKNVSAAKFTVSGELKKADGVVEKISLL-DGKFVIYVDGEAFSMDEIMEIK 200
Query: 131 N 131
+
Sbjct: 201 D 201
>gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 233
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ ++ N T S + ++FL LL+ Q+K+QDPT P++ +E +QLA + +
Sbjct: 11 VDNSSATNKTNGTNSLTSQNSQDLSNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTV 70
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + SN QASS IG + +I
Sbjct: 71 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKNI 110
>gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B
str. REL606]
gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1]
gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia
coli BL21(DE3)]
gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B
str. REL606]
gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli
BL21(DE3)]
gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1]
gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489]
gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + +I
Sbjct: 92 ASNLIGHGVMIPGTTI 107
>gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 EDL933]
gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia
coli O157:H7 str. EDL933]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis
2.10]
gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis
2.10]
Length = 230
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ +
Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83
Query: 74 --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
L N+A S ++G +A + N + VS
Sbjct: 84 AQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVSPN 121
>gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
Length = 239
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 3 INTEVNPT----------QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA 52
+ T VNPT +K+KS+ QD FLKLLITQ++ QDP P+ + +
Sbjct: 1 MTTAVNPTSSTEDPFAGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTS 60
Query: 53 QLAVFSQMEQSVQMNST---LQELLKSNNLAQASSYIGKNITNADGS 96
Q+A S ++ ++NS+ L E ++ A+ IG ++ +GS
Sbjct: 61 QMAQISSVQGIEKLNSSVSALTEAYAASQAFAAAGMIGH-VSLIEGS 106
>gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
LAA1]
gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
LAA1]
gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 159
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 11/117 (9%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-------LQEL 73
+L ++ F++LL+TQ+++QDP P+ ++ +AQLA FS +E+ Q+ T +Q L
Sbjct: 41 NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100
Query: 74 LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
+L A S IG ++T D S + G V+++ ++ G I V+ T P+T +
Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLTQVV 156
>gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a
str. 2457T]
gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str.
2457T]
gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str.
2457T]
gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri
4343-70]
gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671]
gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71]
gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218]
gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella
putrefaciens CN-32]
gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200]
Length = 253
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
L ++ S+ QAS +G+ + + +G V++ S G+ + T
Sbjct: 100 EIVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYVSSENPSMKGVISTT 147
>gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
Length = 230
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ +
Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83
Query: 74 --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
L N+A S ++G +A + N + VS
Sbjct: 84 AQLGLANMAAMSGWVGMETRSAAPAYFDGTNPVTVSPN 121
>gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana
ATCC 700345]
gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
Length = 270
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
+ + L Q+ F LL Q+ QDP +P++ + + Q+A FS ++ ++N L
Sbjct: 64 PEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNA 123
Query: 73 LLKSNNLAQASSYIGKNI---------TNADGSISGVVNA--------IQVSSTGLTAIT 115
L S+ QAS +G+ + + D S+ G+++ +++ IT
Sbjct: 124 LTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGIISTPEPIESVIVRIEDEKGQLIT 183
Query: 116 VDNTEIPITTGIRIS 130
N + I +S
Sbjct: 184 TYNVDGSAGGNIDVS 198
>gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
HTCC2633]
gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
HTCC2633]
Length = 242
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82
D FL LL Q+K+QDP +P+++ + V QL FS +EQ + N +L+ LL +A
Sbjct: 29 DTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLALQQSDAQLKA 88
Query: 83 SSYIGKNIT 91
+IGK T
Sbjct: 89 LDFIGKEAT 97
>gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863]
gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509]
gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
MG1655]
gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
W3110]
gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5
str. 8401]
gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
DH10B]
gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli
SE11]
gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli
IAI1]
gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli
55989]
gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952]
gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9]
gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp.
4_1_40B]
gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
11368]
gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088]
gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7]
gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1]
gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1]
gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1]
gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1]
gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1]
gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7]
gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718]
gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591]
gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9]
gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD
gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
MG1655]
gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr.
W3110]
gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str.
8401]
gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
DH10B]
gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11]
gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989]
gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1]
gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952]
gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
11368]
gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1]
gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088]
gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1]
gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1]
gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1]
gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1]
gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7]
gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1]
gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7]
gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC
H10407]
gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli
DH1]
gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431]
gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14]
gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G]
gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357]
gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520]
gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482]
gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3]
gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167]
gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718]
gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591]
gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9]
gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli UMNK88]
gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272]
gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
Length = 221
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 1 MEINTEVNPTQQEFSK-----SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M +N+ N + + + + ++ F+ L+I QI++QDPT P+ ++E V QLA
Sbjct: 1 MNVNSTTNSSGNDNTSDVMNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDSTEYVTQLA 60
Query: 56 VFSQMEQSVQM---NSTLQELLKSNNLAQASSYIGK-------NITNADGSISGVV 101
FSQ+E QM ST ++++ + Q++ IGK +T ++ G V
Sbjct: 61 QFSQVESLEQMRLNQSTQMVMMENLGIVQSAQLIGKDAMVPASEVTLDTETVHGKV 116
>gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri
2747-71]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. Sakai]
gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli
UTI89]
gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli
536]
gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli
APEC O1]
gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS]
gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4113]
gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4401]
gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4501]
gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4486]
gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4196]
gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4076]
gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC508]
gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli
ATCC 8739]
gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11]
gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. EC4024]
gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4206]
gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4045]
gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4042]
gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4115]
gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli
O127:H6 str. E2348/69]
gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
TW14588]
gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli
S88]
gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. TW14359]
gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1]
gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1]
gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1]
gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1]
gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W]
gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str.
Sakai]
gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89]
gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536]
gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1]
gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS]
gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4196]
gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4113]
gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4076]
gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4401]
gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4486]
gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4501]
gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC508]
gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11]
gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4206]
gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4045]
gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4042]
gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC4115]
gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli]
gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str.
E2348/69]
gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
TW14588]
gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88]
gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str.
TW14359]
gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15]
gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042]
gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034]
gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1]
gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1]
gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1]
gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1]
gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W]
gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli
UM146]
gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W]
gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1]
gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3]
gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3]
gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii
ATCC 9905]
gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. EC1212]
gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli WV_060327]
gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli EC4100B]
gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. G5101]
gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli
O157:H- str. 493-89]
gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli
O157:H- str. H 2687]
gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli
O55:H7 str. USDA 5905]
gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. LSU-61]
gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68]
gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11]
gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252]
gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263]
gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2]
gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1]
gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. 1125]
gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia
coli O157:H7 str. 1044]
gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605]
gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli AA86]
gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC869]
gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli
O157:H7 str. FRIK966]
gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
EC869]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei
Ss046]
gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei
Ss046]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC
3083-94]
gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94]
gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella
dysenteriae CDC 74-1112]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
Length = 222
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
K+K QD FLKLLITQ+K+QDP +P+ +E +QLA S + ++NSTLQ+L+
Sbjct: 21 KTKKDAENPQDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGIDKLNSTLQQLVS 80
Query: 76 SNN---LAQASSYIGKNITNADGSIS----GVVNAIQVSST 109
S + +A IG + SI+ G + I+++ +
Sbjct: 81 SADDGRSIEALEMIGHSAYVPGKSITLEGEGAIAGIELAQS 121
>gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta
ATCC 11568]
gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta
ATCC 11568]
Length = 246
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQA 82
FL LL TQ+K+QDP P+ ++E AQL + +EQ + N L LLK+ L A
Sbjct: 26 QTFLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLLTNDLLTGLLKAQQGDGLTGA 85
Query: 83 SSYIGKNITN 92
+ YIGK+ T
Sbjct: 86 AQYIGKDATA 95
>gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli
UMN026]
gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1412]
gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1302]
gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299]
gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026]
gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1412]
gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli
FVEC1302]
gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae
155-74]
Length = 231
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMLPGTTV 107
>gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella
halifaxensis HAW-EB4]
gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
Length = 267
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
Q+ + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N
Sbjct: 56 QESSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEI 115
Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSIS 98
L L S+ QAS +G+ + +
Sbjct: 116 GNLNALTSSSQALQASGLVGQKVLIPSDTAH 146
>gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli
SMS-3-5]
gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli
IAI39]
gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39]
gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354]
gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli
CFT073]
gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli
83972]
gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1]
gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1]
gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073]
gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli
83972]
gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1]
gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1]
gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972]
gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
Length = 222
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
++FL LL QI +QDP P+ +++ V+QLA +Q+EQS+ N++L+++ + A S
Sbjct: 29 YNSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQISTMLSTVGAMS 88
Query: 85 ---YIGKNITNADGSI 97
IG+++ +
Sbjct: 89 DLQLIGRDVLVPSSQV 104
>gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551]
gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum
IPO1609]
gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551]
gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum
IPO1609]
Length = 218
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82]
gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli
O83:H1 str. NRG 857C]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli
ED1a]
gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli
NC101]
gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a]
gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli
NC101]
Length = 231
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
Length = 221
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N N + + K LG+D F+ LL+ +++HQDPTEPM + + + Q + + +E
Sbjct: 8 LNAATNVDTVASTAAVDKTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLES 67
Query: 63 SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98
+ N L+ L S + +Q + S IGK +I+
Sbjct: 68 AENTNKALESLAASLSASQNFSSISAIGKTADLGSNAIA 106
>gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 236
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + ++ Q
Sbjct: 36 QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQIDNSQSLQ 95
Query: 82 ASSYIGKNITNADGSI 97
A+S IG + +I
Sbjct: 96 AASLIGHGVMIPGTTI 111
>gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB]
gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB]
Length = 224
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 3 INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N +++PT S + + Q+ FL +L+TQ+K+QDPT PM S+ QLA +
Sbjct: 7 VNDKLDPTVLSSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+ ++N+TL + + ++ Q+S+ IG + G I
Sbjct: 67 LSGIEKLNTTLGSISGQINTSQSLQSSTLIGHGVMVNGGQI 107
>gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1]
Length = 231
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
414]
Length = 286
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N T+Q+++++
Sbjct: 39 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVETME 98
Query: 79 LAQ----------ASSYIGKNITNADGSIS 98
A IGK T + +
Sbjct: 99 KLSNSFSTSMSTAAVGAIGKMATVNENKVK 128
>gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae
Ech1591]
gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591]
Length = 223
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q
Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90
Query: 82 ASSYIGKNITNADGSI 97
A+S IG + ++
Sbjct: 91 AASLIGHGVLVPGSTV 106
>gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD
[Pseudoalteromonas haloplanktis ANT/505]
gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD
[Pseudoalteromonas haloplanktis ANT/505]
Length = 226
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
QQ + L Q+ F LL Q+ +QDP+ P + +AQ+ F+ + +N+
Sbjct: 20 QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97
+ L + SN+ QAS+ +GK ++
Sbjct: 80 ESLASSMTSNSALQASTLVGKQALLESNTL 109
>gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CFBP2957]
gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CFBP2957]
Length = 218
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+TL + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
Length = 225
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
Q ++ S T + F+K+L Q +QDP EP+ ++E AQLA FS +EQ +
Sbjct: 14 HTSQQPAATQKTSGLTSDFETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTKS 73
Query: 67 NSTLQELLKSNNLAQASSYIG 87
N+ L+ L LA ++ G
Sbjct: 74 NTLLEGLQSQLGLANMAALSG 94
>gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha
H16]
gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha
H16]
Length = 221
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S +
Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66
Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
MN+TL +LL + ++A ++ IG + +S
Sbjct: 67 MQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVS 105
>gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
Length = 219
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ T+ Q +FLKLL Q+++QDP EP+ +E V+Q+A + +MN+ L
Sbjct: 17 NPNATVGTGSATMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGIAEMNANL 76
Query: 71 QEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAITVDNT 119
+ L L A+S+IGK+ + +A G +G V + ++ G T VD +
Sbjct: 77 ASIKQELTGTRLGDAASWIGKSMLVQSNVAVPDASGYYAGQV-SFADATNGATVDLVDGS 135
>gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora
CFBP1430]
gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC
49946]
gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC
49946]
gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora
CFBP1430]
gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
BAA-2158]
Length = 226
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 4 SPVNNTRGPGQVDMGSSAADLSGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTASGV 63
Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94
++N + + +L A+S++G+ + A
Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97
>gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22]
gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171]
gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
12009]
gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22]
gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171]
gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
12009]
gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010]
Length = 231
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIHGTTV 107
>gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp.
W3-18-1]
gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
Length = 253
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
PT+ ++KS++ L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N
Sbjct: 41 PTESIVPEAKSQQ-LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNK 99
Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
L ++ S+ QA+ +G+ + + +G V++ S G+ + T
Sbjct: 100 EIVNLNSVMTSSQALQATGLVGRKVLLP--TDTGYVSSENPSMKGVISTT 147
>gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
Length = 225
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
FLKLL TQ+ +QDPT PM +++ QLA FSQ+EQ V+ N+ L L + ++
Sbjct: 32 DYQMFLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMS 91
Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
+ ++++G + N + +S + + G +S
Sbjct: 92 EYANWVGMEARSESPGYFDGTNPVTISPNPVKGADATTVVVSDAAGNEVS 141
>gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
17241]
gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
17241]
Length = 249
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL L++ Q+++QD P+ ++ V QLA F+ M Q ++ + ++ A S
Sbjct: 53 DDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQMQELAANMKN-------NYALSL 105
Query: 86 IGKNITNADGSISGV-------VNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+G N+T A ++SG ++ + + ITV+ ++ + I+N
Sbjct: 106 VGTNVTAAKFAVSGALIKETGPISKVSLVDN-SYQITVNGQTFSLSEIMEINN 157
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 53 QLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTG 110
Q S++ + S+ K++ A S IGKN+T + +I+G+V I
Sbjct: 145 QTFSLSEIMEINNSESSGSTNNKNDQTAYLVSLIGKNVTVKHDGDTITGIVEEISTEDG- 203
Query: 111 LTAITVDNTEIPITTGIRISN 131
+ +D + + +
Sbjct: 204 -YKLMIDGEWYSLDEVTGVGS 223
>gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM
2380]
gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM
2380]
Length = 218
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ + LG+D FL LL+TQ+++QDP P +E +QLA +S +EQ
Sbjct: 6 DVNQTASSSMTGSLTGSSNLGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQL 65
Query: 64 VQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98
+N LQ+L +N A +G+++ S
Sbjct: 66 FTVNDQLQQLETTNGNVVQMTALGLMGQDVVVQSDSFK 103
>gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
ATCC 35316]
gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
ATCC 35316]
Length = 236
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + +
Sbjct: 29 GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88
Query: 75 KSNNLAQASSYIGKNITNADGSI 97
S+ QA++ IG + +I
Sbjct: 89 DSSQSLQAANLIGHGVMIPGTTI 111
>gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 292
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++
Sbjct: 43 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETME 102
Query: 79 LAQ----------ASSYIGKNITNADGSIS 98
A IGK T + +
Sbjct: 103 KLSNSFSTSMSTAAVGAIGKMATVNENKVK 132
>gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus]
gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633]
gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus Peru-466]
gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AN-5034]
gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ4037]
gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus K5030]
gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus 10329]
Length = 227
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N K+ + Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+
Sbjct: 22 NSGIAPNPTDKNSASSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMS 81
Query: 68 STLQE---LLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVD 117
+Q LL + + + +G+ + DG+ +G + + S +T + D
Sbjct: 82 KVMQNSMVLLDNMQVLSTAGLVGQTVYVNSKEFELGDGAQNGKIE-LSHGSNQVTLVVKD 140
>gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli
E24377A]
gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A]
Length = 231
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMILGTTV 107
>gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter
antarcticus 238]
gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter
antarcticus 238]
Length = 226
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 1 MEINTEVNPTQQEF-----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
ME+ + P Q S++ + + FLK+L Q+++QDP P +SE QLA
Sbjct: 7 MELTQALTPVSQPAFSPQAEPSETVISSNFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 66
Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89
FS +EQ+V N L L+ N +AQ + ++GK
Sbjct: 67 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 103
>gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis
glossinidius str. 'morsitans']
gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis
glossinidius str. 'morsitans']
Length = 269
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS---Q 59
I+ T ++S+ + L D FL++++ QIK+QDPT PM ++ +Q+A
Sbjct: 50 ISDSRAATSAMDAQSQGTQEL-MDNFLQMMLAQIKNQDPTNPMDNNQLASQMAQMHVALG 108
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+E+ + ++ S S+++G+ +
Sbjct: 109 VEKLNNTVLGMGNMVNSVQAVNLSNWVGRTV 139
>gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus
communis]
gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus
communis]
Length = 222
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+N S S + +T QD F+ LL+TQ+K+QDP PM ++ +Q+A + + ++
Sbjct: 15 LNSVNTRNSASTTDET--QDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKL 72
Query: 67 NSTLQELLKSNNLA---QASSYIGKNITNADGSIS 98
N T+ L+ S L QA+S IG+N+ +++
Sbjct: 73 NETMSSLIGSVQLGQSYQATSMIGRNVLVEGKTLT 107
>gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum PSI07]
gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum PSI07]
Length = 218
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
Length = 226
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ + ++ S S +L + FLKL+I Q+K QDPT+P +++ + S + ++QM
Sbjct: 12 DASGNTYTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMI 71
Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108
STL+ + + +++ A+ IG +I N + SG + + V S
Sbjct: 72 STLESISTAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVES 115
>gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum
GMI1000]
gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia
solanacearum GMI1000]
Length = 221
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 33 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92
Query: 85 YIGKNI 90
IG+ +
Sbjct: 93 LIGRTV 98
>gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 222
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80
DAFL+LLI ++++QDPT P +E + Q+A FS +EQ +N T + S +L
Sbjct: 24 DSDAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLN 83
Query: 81 QASSYIGKNITNADGSISGVVNAIQVSS 108
A S+IG+++ IS +A V S
Sbjct: 84 SAVSFIGQSVLAQGDDISKTDDATTVVS 111
>gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum
MolK2]
gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum
MolK2]
Length = 218
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter
vinelandii DJ]
gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ]
Length = 222
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
++ F+ LLI Q+++QDP +PM+ +E +QLA + + ++N+TL+ + + Q
Sbjct: 29 RENFMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNGIEELNATLEGITGQIDETQALQ 88
Query: 82 ASSYIGKNITNADGSI 97
A++ +G + + +
Sbjct: 89 AAALVGHGVLVSGSQV 104
>gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus
denitrificans PD1222]
gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222]
Length = 221
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 1 MEINTE------VNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQ 53
M++NT Q FS + Q + FLK+L TQIK+QDP PM +++ Q
Sbjct: 1 MDMNTSSVTGNVYEGGSQSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQ 60
Query: 54 LAVFSQMEQSV---QMNSTLQELLKSNNLAQASSYIGKNITNAD 94
LA FS +EQ V + + L + + L Q S++IG+ +
Sbjct: 61 LATFSGVEQQVQTNLLLTQLLQNINGGELGQFSNWIGREVRTTS 104
>gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
Length = 219
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
+ FL +L TQI++QDP +P+ ++E QL +S +EQ+++ N L+E+ L SN
Sbjct: 26 DYELFLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSM 85
Query: 81 QASSYIGKNITNADGSIS 98
SYIG +T + +
Sbjct: 86 GYVSYIGNEVTADASTTT 103
>gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp.
638]
gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638]
Length = 236
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + L + Q
Sbjct: 36 QGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQLNDSQSLQ 95
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + +I
Sbjct: 96 ASNLIGHGVMIPGTTI 111
>gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083]
gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083]
Length = 224
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 11 QQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q++ ++++ LG D FLK+L Q+++QDP P+ +++ QLA FS +EQ V+ N
Sbjct: 17 QRDTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTND 76
Query: 69 TLQELLKSNNLAQASS---YIGKNITNAD 94
L L + S ++G ++ +
Sbjct: 77 LLSSLAATMASGGVESLGHWVGMDVRAGN 105
>gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
Length = 236
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
++ F++L I Q+K+QDPT P + + V+Q+A FS +EQ M+ST+ + L S+
Sbjct: 44 DKNVFMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQAL 103
Query: 81 QASSYIGKNI------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
AS+ +GK++ + DGS + A S + T +T+ +++
Sbjct: 104 TASTLVGKSVYVDQDTISYDGSTDAYIKATIPSDSSATTVTITDSD 149
>gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
pyrifoliae Ep1/96]
gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
pyrifoliae Ep1/96]
gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
12163]
Length = 226
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQD-AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 4 SPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAGV 63
Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94
++N + + +L A+S++G+ + A
Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97
>gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii
Sb227]
gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227]
gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella
flexneri CDC 796-83]
gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74]
Length = 231
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+ L + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification
[Ralstonia solanacearum CMR15]
Length = 218
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89
Query: 85 YIGKNI 90
IG+ +
Sbjct: 90 LIGRTV 95
>gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
Length = 230
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT PM+ +E +QLA S +
Sbjct: 12 NTGVQSTSSSTSLTGSSAADLQSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + + QA++ IG + ++
Sbjct: 72 EKLNTTLGSISGQIDNGQSLQATALIGHGVMIPGTTV 108
>gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum S14]
gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum S14]
Length = 225
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + M +Q LL + +
Sbjct: 37 KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTENMAKLMQNSMVLLDNMQVLS 96
Query: 82 ASSYIGKNITNADGSIS 98
+ +G+ + +
Sbjct: 97 TAGLVGQTVYVEGSEVE 113
>gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 225
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ ++ N + + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++
Sbjct: 15 VASQSNAGIAANPQDMNSATSLQNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQS 74
Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLT 112
+ M+ +Q LL + + + +G+ + +DG +G V + SS +T
Sbjct: 75 TENMSMLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEVELSDGIQNGRVE-LAHSSNQVT 133
Query: 113 AITVDN----TEIPITTG 126
+ D T++P+
Sbjct: 134 LVVEDEFGQKTKVPLGAH 151
>gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
Length = 192
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + + S L D F KLL Q+++QD + PM SE + Q+ + M+
Sbjct: 8 NNYSSLINSLTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMN 67
Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAI 104
++ +++ + N + +S +GK + A +G + I
Sbjct: 68 NFSTAMEDFSQINTINYGTSMMGKEVMIAAADKTGQIKKI 107
>gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
Length = 219
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+++ T + + ++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E
Sbjct: 5 DVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVE 64
Query: 62 QSVQM--NSTLQE-LLKSNNLAQASSYIGKNITNADGSIS 98
M N ++Q ++++ + Q++ +GKN +
Sbjct: 65 SLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFT 104
>gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp.
Ejp617]
Length = 226
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQD-AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ VN T+ +F+ LLI Q+++QDPT PM ++ +QLA F+
Sbjct: 4 SPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTAAGV 63
Query: 64 VQMNST---LQELLKSNNLAQASSYIGKNITNAD 94
++N + + +L A+S++G+ + A
Sbjct: 64 EKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAG 97
>gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp.
SKA34]
Length = 226
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
N + + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E +
Sbjct: 18 STNMSVAGNPNNANDANSLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTEN 77
Query: 66 MNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
M +Q LL + + + +G+ + I
Sbjct: 78 MAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEIE 113
>gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis]
Length = 182
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E
Sbjct: 7 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 66
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+N T+ + + + +A+S + + A I + S+ G A + +T+
Sbjct: 67 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNDI-----YVDKSNNGENAGSDADTD 121
Query: 121 IP 122
I
Sbjct: 122 ID 123
>gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 236
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + +
Sbjct: 29 GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88
Query: 75 KSNNLAQASSYIGKNITNADGSI 97
++ QA++ IG + +I
Sbjct: 89 DNSQSLQAANLIGHGVMIPGTTI 111
>gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3]
gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
Length = 221
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N++V + + + ++ F+ L+I QIK+QDPT P+ +E V QLA FSQ+E
Sbjct: 9 NSDVASSADVMNSPGNDAAAIKNEFMTLMIAQIKNQDPTNPIDGTEYVTQLAQFSQVESL 68
Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKN 89
QM + ++++ + Q++ +GKN
Sbjct: 69 EQMRANQSSQMVMMENLGIVQSAHLVGKN 97
>gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia
solanacearum CMR15]
Length = 134
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
+L FLK+L+TQ+ +QDP +PM + +AQ+A F+ + QS QMNS ++ L+ +
Sbjct: 18 NSLNMQDFLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQQMNSNIETLVSNQASL 77
Query: 81 QASSYIGKNI 90
Q+ IG+ +
Sbjct: 78 QSVGLIGRTV 87
>gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
Length = 223
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN V + +F + + + L +DAF++L + Q++ QDPT+PM + + Q A S ME
Sbjct: 6 INNNVTTSGNDFVYNPNSQ-LDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLSTMEM 64
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGK 88
+ M +TL L L+ + + S IGK
Sbjct: 65 NQNMQTTLDNLANTLQQTSSLNSISAIGK 93
>gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1]
gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1]
Length = 231
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGYGVMIPGTTV 107
>gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas
ingrahamii 37]
gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas
ingrahamii 37]
Length = 230
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T++ + + + + ++ F+ L++ QI++QDP P +E V+QLA FSQ+E +
Sbjct: 16 TQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAE 75
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
M S +Q ++ + + +S +G+ + ++ + + S G A + +
Sbjct: 76 NMVSLMQRNSVMMDNLQVLATASLVGQEV---------MIRSDKFSVDGEPAQNLSGQVV 126
Query: 122 PITTGIRI 129
+ ++
Sbjct: 127 LTSPSSQV 134
>gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales
bacterium TW-7]
gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales
bacterium TW-7]
Length = 226
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS
Sbjct: 20 TTPTTTEEQSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNF 79
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97
+ L + SN+ QAS+ +GK S+
Sbjct: 80 ESLAASMTSNSALQASTLVGKQALLESDSL 109
>gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus nematophila
ATCC 19061]
gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
nematophila ATCC 19061]
Length = 233
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ V +D FL LL+ Q+K+QDPT PM+ +E Q+A S ++
Sbjct: 13 NSTVGELASAAKIKPQSSDDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGV 72
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N TL + + N Q + I + + I
Sbjct: 73 EKLNKTLGSIVGQMDHNQAMQTTLLINRGVMVPGDRI 109
>gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha
JMP134]
gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134]
Length = 226
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
Q FLK+L+TQ+ +QDP PM ++ +QLA S + MNSTL +LL + ++A
Sbjct: 34 QSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTLTQLLNQTSASRAMD 93
Query: 83 -SSYIGKNITNADGSIS 98
++ IG+ + S
Sbjct: 94 SAALIGRTVMVPGSQFS 110
>gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative
[Rhodospirillum centenum SW]
gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative
[Rhodospirillum centenum SW]
Length = 219
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 11 QQEFSKSKSKKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q+ + + L QD FLKLL Q+ +QDP P+ A++ V QLA FS +EQ+VQ N+
Sbjct: 12 SQQTTADVASVRLAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAVQSNT 71
Query: 69 TLQELLKSNNLAQ---ASSYIGKNI 90
L E+L + +Y+G+ +
Sbjct: 72 RLAEVLGELRSSSERLDLAYVGRTV 96
>gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25]
gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
Ex25]
Length = 227
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N K + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+
Sbjct: 22 NNGIAPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMS 81
Query: 68 STLQE---LLKSNNLAQASSYIGKNI 90
T+Q+ LL + + + +G+ +
Sbjct: 82 RTMQQSMILLDNMQVLSTAGLVGQTV 107
>gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH
1]
gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula
baltica SH 1]
Length = 164
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +
Sbjct: 33 SAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTN 92
Query: 69 TLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSST 109
TL +L S L AS IG+ ++ + + +GVV+ I V +
Sbjct: 93 TLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 136
>gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
VM603]
gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
VM603]
Length = 227
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
+ + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q
Sbjct: 31 NPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSMENMSGLMQNS 90
Query: 73 --LLKSNNLAQASSYIGKNITNADGSI 97
LL + + + +G+ + +
Sbjct: 91 MVLLDNMQVLSTAGLVGQTVYVSSNEF 117
>gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB]
gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB]
Length = 229
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81
QD+FL +L TQ+K+QDP PM ++ +QLA S +E +N+TL LL S + Q
Sbjct: 37 QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQALQ 96
Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
A+ IG + SG+ + +S G+T + N+ +
Sbjct: 97 AAGAIGSQVLVEG---SGLALSSGISQGGVTLGSAANSVV 133
>gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
Length = 217
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N+ + + +K G + FLKLL+TQ+K+QDP PM ++ +Q+A + +
Sbjct: 8 NSSSSVYDALNGSTTTKTDDGSERFLKLLVTQMKNQDPMNPMDNAQVTSQIAQINTVTGI 67
Query: 64 VQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSIS 98
+N T++ + S+ + Q + +G + A +
Sbjct: 68 STLNQTVKSLSSQMLSSQVLQGAGLVGHTVLMAGSKLH 105
>gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
VM573]
gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
VM573]
gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
MB-451]
Length = 227
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
+ + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ M+ +Q
Sbjct: 31 NPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIENMSGLMQNS 90
Query: 73 --LLKSNNLAQASSYIGKNITNADGSI 97
LL + + + +G+ + +
Sbjct: 91 MVLLDNMQVLSTAGLVGQTVYVSSNEF 117
>gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
Length = 218
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN S +++ D F+ LL TQI++QDP EP+ +SE QL ++ +EQ
Sbjct: 4 INALTPNAGSSGSSAQNSINANFDLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQ 63
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNA-------DGSISGVVNAIQVSSTGLT 112
V L E L + +Q +YIGK +T D S ++A+ S G
Sbjct: 64 QVATTEKLDEQLTQLKTQSASQFVNYIGKEVTAQSSTAQLKDDKASWNLDAV---SAGKA 120
Query: 113 AITVDNTE 120
+T+ N+E
Sbjct: 121 TVTIKNSE 128
>gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47]
Length = 153
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Q+ +
Sbjct: 22 SAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGATDQLTN 81
Query: 69 TLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSST 109
TL +L S L AS IG+ ++ + + +GVV+ I V +
Sbjct: 82 TLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 125
>gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
Length = 220
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E QM + ++++ + Q
Sbjct: 29 KNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVIMENLGIVQ 88
Query: 82 ASSYIGKNITNADGSIS 98
++ +GK+ +
Sbjct: 89 SAQLVGKDAMVPASEFT 105
>gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
Length = 231
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT PM+ +E +QLA+ S + ++N+TL + + ++ Q
Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + ++
Sbjct: 92 ASNLIGHGVMIPGTTV 107
>gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
Length = 183
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
+L Q+K+QDP P+++++ QLA FS +EQ+V N L+ L ++ +S++GK +
Sbjct: 1 MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60
Query: 91 TNA 93
Sbjct: 61 RAP 63
>gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617]
Length = 224
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 92 ASTLIGHGVMLNGTQI 107
>gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11]
gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11]
Length = 228
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L +
Sbjct: 21 TPKKATGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAM 80
Query: 74 ---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
L N+A S ++G + S N I VS
Sbjct: 81 QAQLGLANMAAMSGWVGMETRSTAPSHFDGANPITVSPN 119
>gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio
alginolyticus 12G01]
Length = 227
Score = 73.8 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+
Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74
Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90
+ + M+ T+Q+ LL + + + +G+ +
Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107
>gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
Length = 220
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q + + Q
Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91
Query: 82 ASSYIGKNITNADGSIS 98
S IG+++ + +S
Sbjct: 92 GISLIGRSVLSEGDRMS 108
>gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 223
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + + S +L Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ +
Sbjct: 16 GSASSSLNVNTNPNSAGSL-QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTE 74
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
M + Q LL + + ++ +GK +
Sbjct: 75 NMTTMTQNSMVLLDNLQVLSTANLVGKTVYVPSDEFE 111
>gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
12163]
Length = 226
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 34 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 94 ASTLIGHGVMLNGTQI 109
>gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative
[Roseobacter sp. CCS2]
gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative
[Roseobacter sp. CCS2]
Length = 220
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+V T S + ++ + FL++L Q+K+QDP P+ +++ QLA FS +EQ+V
Sbjct: 9 QVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATFSGVEQAVL 68
Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITNA 93
N L+ L N L ++ +GK + +
Sbjct: 69 TNDLLKSLTTQMNTGGLVDMAALVGKQVKST 99
>gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
Length = 224
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
+ S D FLKLL+ Q+++QDP PM ++ +Q+A + + ++N ++Q +
Sbjct: 22 SGSTASTTEASADRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVSGIEKVNESIQAM 81
Query: 74 ---LKSNNLAQASSYIGKNITNAD 94
Q + +G+ + A
Sbjct: 82 GGQFTQMQALQGAQLVGQGVMVAG 105
>gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter
turicensis z3032]
gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis
z3032]
Length = 202
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
+ S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL +
Sbjct: 2 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 61
Query: 74 LKSNNLAQASSYIGKNITNADGSI 97
+ ++ AS+ IG + +I
Sbjct: 62 IDNSQSLAASALIGHGVMIPGSTI 85
>gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98]
Length = 174
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
T + + K+ +G+D FLKL +T +++QDP M + + Q++ S MEQ M
Sbjct: 27 TTTKADEQKTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMTKA 86
Query: 69 --TLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
L++ + + L ++GK I + ISG V+A+++++ + V + + +
Sbjct: 87 VNALKDTVNTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAANNEIQLVVGDKIVLM 146
Query: 124 TTGIRISN 131
+S+
Sbjct: 147 KYVTNVSD 154
>gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio
alginolyticus 40B]
gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio
alginolyticus 40B]
Length = 227
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+
Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74
Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90
+ + M+ T+Q+ LL + + + +G+ +
Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107
>gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina
loihiensis L2TR]
gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR]
Length = 227
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
++ + L Q+ F +LL Q+ QDP++P++ + +AQ+ F+ E ++ +
Sbjct: 23 YADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQF 82
Query: 74 ---LKSNNLAQASSYIGKNI 90
+ SN QAS+ +G+ +
Sbjct: 83 ASDMTSNQALQASTMVGRKV 102
>gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 226
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T N + T Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++
Sbjct: 18 TTTNTGISSNGLDANDSTSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSME 77
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
M+S +Q LL + + + +G+ + +
Sbjct: 78 NMSSLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEFE 114
>gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella
piezotolerans WP3]
gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
Length = 267
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
+ + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N
Sbjct: 56 AENSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEEI 115
Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNA 103
L L S+ QAS +G+ + +G V+A
Sbjct: 116 VNLNALTTSSQALQASGLVGQKVLIPSD--TGYVSA 149
>gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
Length = 225
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
D F+ LL T++++QDPTEP+ ++ V Q+ +SQ+EQ +MN + L L + ++
Sbjct: 32 DDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLTEMNEKMDTLTDALDAQGISSG 91
Query: 83 SSYIGKNITNADGSI 97
Y+GK + +I
Sbjct: 92 LDYLGKEVEADGYTI 106
>gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae
Ep1/96]
gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
pyrifoliae Ep1/96]
Length = 224
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 92 ASTLIGHGVMLNGTQI 107
>gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter
sakazakii ATCC BAA-894]
gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894]
Length = 226
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
+ S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL +
Sbjct: 26 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 85
Query: 74 LKSNNLAQASSYIGKNITNADGSI 97
+ ++ AS+ IG + +I
Sbjct: 86 IDNSQSLAASALIGHGVMIPGSTI 109
>gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC 100599]
gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 310
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N + P K + L Q+AF+KL++ Q+KHQDP PM S+ + Q ++ + +E+
Sbjct: 11 NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70
Query: 64 VQMNSTLQELLKSN-NLAQASSYIGKNITNA------------DGSISGVVNAIQVSSTG 110
+M + +++ S L + +G+ + + GV++A+ + G
Sbjct: 71 TKMTTLMEQSNNSMVTLDKYEKLVGRTASYSLTTKDEMTGETKTEKKEGVLDAVYMDQ-G 129
Query: 111 LTAITVDNTEIPI 123
+ PI
Sbjct: 130 KIYFRIAGESTPI 142
>gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
Length = 375
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAMEKKKHEPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSNNLAQ 81
+ T++E+ + ++
Sbjct: 67 MQEESKKTMKEVANAMQSSK 86
>gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305]
gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305]
Length = 160
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 3 INTEVNPTQQEFS----KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
I T +PT Q L +AFLKL+I Q+++QDPTEP E + Q++
Sbjct: 4 IETVYSPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMR 63
Query: 59 QMEQSVQMNSTLQELLKSNN-------LAQASSYIGKNITNA-------------DGSIS 98
++ S+++ + L S + A+ IG ++T +
Sbjct: 64 SLQSSIELEDMIASLANSQTSSASANFASSAAGLIGHSVTGTIPESTDEEGETIPAEEVE 123
Query: 99 GVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
G+V + G +T+ + E+P+ ++
Sbjct: 124 GIVER-AILRDGKAYVTIGDKELPVENIASVT 154
>gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp.
MED121]
gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp.
MED121]
Length = 230
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
N +V +K SK D F+ L I Q+K QDPT+P ++ V+Q+A S +E+
Sbjct: 19 NAKVKAGVDVEAKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEEL 78
Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+++ L+ + L S+ AS+ +G+ I + S + G I + E
Sbjct: 79 STISTQLESMTSALTSSQAISASTLVGQKIMANTNTAS-------LDEGGTVPIKMTIPE 131
Query: 121 IPITTGIRISN 131
+ ++T + I N
Sbjct: 132 VSLSTTLEIRN 142
>gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium SS3/4]
Length = 189
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 1 MEINTEVNPTQQE--FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
+ +++ NP Q + S SK T+ ++F+KLL Q+ +QD T PM SE ++Q+ +
Sbjct: 5 ITVSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMA 64
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSST 109
++ M +L A S IG+ +T A+G G V ++ +
Sbjct: 65 MVQSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVAVTDPDTGAANGVKYGKVISVDFTQG 124
Query: 110 G-LTAITVDNTEIPITTGIRIS 130
+ + D+T +++ + +
Sbjct: 125 DPVVRLEGDDTSYKMSSVLGVG 146
>gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 230
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ +
Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90
Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ ++ L S++IGK T+ DG+ +G V +S ++ ++
Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145
>gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602]
gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602]
Length = 234
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQAS 83
+FL LL+ Q+K+QDPT PM S+ +QLA S + ++N+TL + + S + QAS
Sbjct: 38 SFLTLLVAQLKNQDPTNPMDNSQLTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQAS 97
Query: 84 SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
S IG + +SG + + G + T E+ +
Sbjct: 98 SLIGHGVM-----VSGSAILVGSDTDGTVSTTPFGFELETASDTT 137
>gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217]
gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217]
Length = 220
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + ++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E M
Sbjct: 14 TANVLQSPGNDAASLKNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLEYMRKN 73
Query: 70 LQE---LLKSNNLAQASSYIGKNIT 91
++++ + Q++S IGK+ T
Sbjct: 74 QSSQMVMMENLGIVQSASLIGKSAT 98
>gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
33638]
gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
33638]
Length = 219
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 4 NTEVNPTQQEFSKSK---SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
N+E+N S + + F+ LL+ QI++QDP PM +E V+Q+A SQ+
Sbjct: 7 NSELNSKSGAVSPRQDVLPNGDELNNQFMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQV 66
Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
+ + M L+ ++ ++ +G+ + +
Sbjct: 67 QSTENMAKMLKSNTVQMERMQSIATANLVGQQVMVESDDVE 107
>gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter
shibae DFL 12]
gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12]
Length = 220
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ T T Q +++ + + FL++L TQ+++QDP EP+ + + QLA FS +
Sbjct: 4 VTTTRTATPQPSGSAQTATAIASDFETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGV 63
Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95
EQ Q NS L++L + +L+Q +S++G +
Sbjct: 64 EQQTQTNSLLEDLGSQMGLMSLSQLASWVGMDALAEGN 101
>gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
Length = 226
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
+ + N T + + ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++
Sbjct: 15 VGSGANTTSVTGNPQDANSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQ 74
Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
+ M S +Q LL + + + +G+ + +
Sbjct: 75 STENMASMMQNSMVLLDNMQVLSTAGLVGQTVFVSGNEFE 114
>gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 191
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
+L+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ QASS IG
Sbjct: 1 MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60
Query: 88 KNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127
+ + GS GVV ++ +TA D+ + + T
Sbjct: 61 RGVMVPGTNVLAGSKDGVVTTTPFGVELERAADKVTATITDSNGVAVRTIE 111
>gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii
AK1]
Length = 221
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
++N + + ++ + ++ F+ L++ QI++QDP P +E VAQLA FSQ+E
Sbjct: 9 QVNNIESASTLPPQENPNSAGALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVE 68
Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
+ + +Q +L + + ++ + K +T +S
Sbjct: 69 STENLVQLMQNNTTMLDNLQVLSTAALVDKTVTVKSDQLS 108
>gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
Length = 220
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
QD FL LL+TQ+K+QDP PM ++ +Q+A S + Q+NST+Q L + ++ Q
Sbjct: 28 QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87
Query: 82 ASSYIGKNITNADGSI 97
A+S IG I
Sbjct: 88 ATSMIGHAALVPGAQI 103
>gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 308
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+ + T + + S LGQ+AFL +L+ ++ + DPT+ ++ V Q+A F+ +EQ
Sbjct: 5 VTNALGYTDRGTAIISSNTELGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQ 64
Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+N+T++ + Q + K+ + G++ + S T A +D +
Sbjct: 65 LNNLNTTMKNFSYQQMVGQVAILNDKD--TDGNNKFGLITQVFKSGTSTYATVLDAST 120
>gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
Length = 228
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + +
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99
Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126
+ +G+ + + SG V ++ S +T + D T++P+
Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154
>gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 184
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSY 85
+KLL+ Q+ +QDP PM ++ +Q+A + + ++N+T++ + S + Q +S
Sbjct: 1 MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60
Query: 86 IGKNITNADGSIS---GVVNAIQVSSTGLTAITVD 117
+G + G++S GV ++ +T+D
Sbjct: 61 VGHGVLVESGTLSIDGGVAKGAVNLNSKADKVTID 95
>gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
BAA-2158]
Length = 223
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 91 ASTLIGHGVMVNGTQI 106
>gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum
seropedicae SmR1]
gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum
seropedicae SmR1]
Length = 240
Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA-- 82
Q+ FL LL+ Q+K+QDP PM S+ +Q+A S + Q+NSTL L+ + N +QA
Sbjct: 36 QNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALS 95
Query: 83 -SSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
++ IG ++ S+ + +S
Sbjct: 96 SANMIGHSVLAPGNSVQLTSETTKDASGNDVT 127
>gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora
CFBP1430]
gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
49946]
gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
49946]
gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora
CFBP1430]
Length = 223
Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q
Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 91 ASTLIGHGVMVNGTQI 106
>gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 230
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ +
Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90
Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ ++ L S++IGK T+ DG+ +G V +S ++ ++
Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145
>gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC
BAA-1116]
gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116]
Length = 228
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + +
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99
Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126
+ +G+ + + SG V ++ S +T + D T++P+
Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154
>gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri
ATCC BAA-895]
gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895]
Length = 232
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+TL + + ++ Q
Sbjct: 33 QSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQ 92
Query: 82 ASSYIGKNITNADGSI---SGVVNAIQVSST 109
AS+ IG + +I +G +++T
Sbjct: 93 ASTLIGHGVMIPGTTILAGTGTEEGATITTT 123
>gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum
ATCC 824]
gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum
ATCC 824]
gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum EA
2018]
Length = 239
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
+ TLGQDAFLK+LI ++ HQDPT +++ +AQLA FS +EQ +N T+
Sbjct: 32 AGNTLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQMTNLNRTMT------- 84
Query: 79 LAQASSYIGKNITNADGSISGV 100
+ ASS +G +T GV
Sbjct: 85 FSGASSLMGGTVTLKQYDPDGV 106
>gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
Length = 222
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
++ + Q + Q+ FL +L+TQ+ +QDP P+ S+ +QLA S +
Sbjct: 9 SSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGL 68
Query: 64 VQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
MN+T+ +LL+ ++A ++ IGK + ++S
Sbjct: 69 QTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPGSAVS 106
>gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales
bacterium SWAT-3]
Length = 222
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM- 60
++N + + + + + ++ F+ L++ QI++QDP P +E VAQLA FSQ+
Sbjct: 9 QVNNIESASTMTPQDNPNSASALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVE 68
Query: 61 --EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
E VQ+ +L + + ++ I K +T +S
Sbjct: 69 STENLVQLTQNNSTMLDNLQVLSTAALIDKTVTVKSERLS 108
>gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila]
Length = 231
Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ---MNSTLQELLKSNNLAQ 81
++ FL++++ QI++QDPT P+ ++ V QLA FS +E + ++ + + Q
Sbjct: 42 RNEFLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVEGVESLKVLQQKSINMMDTQQVLQ 101
Query: 82 ASSYIGKNITNADGSIS 98
+++ I K + +++
Sbjct: 102 STALIDKEVMVPSKTLT 118
>gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi
1DA3]
gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi
1DA3]
Length = 228
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQ 81
Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q LL + +
Sbjct: 40 QNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQNSMVLLDNMQVLS 99
Query: 82 ASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDN----TEIPITTG 126
+ +G+ + + SG V ++ S +T + D T++P+
Sbjct: 100 TAGLVGQTVYVSSNEFELGEGVQSGKVE-LEHGSNQVTLVVKDEFGQSTKVPLGAH 154
>gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
Length = 274
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83
+ FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K AQ S
Sbjct: 32 NTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQQTAQTSQG 91
Query: 84 -SYIGKNITNAD 94
SY+G+ + +
Sbjct: 92 ISYLGQTVEVSG 103
>gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio brasiliensis
LMG 20546]
Length = 226
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82
+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M++ +Q LL + +
Sbjct: 39 NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSTMMQNSMVLLDNMQVLST 98
Query: 83 SSYIGKNITNADGSIS 98
+ +G+ + +
Sbjct: 99 AGLVGQTVYVSSNEFE 114
>gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b]
gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b]
Length = 224
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 3 INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N ++PT S + + Q+ FL +L+TQ+++QDPT PM S+ QLA +
Sbjct: 7 VNENLDPTVLSSSSSSSTGNSAEDLQNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINT 66
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+ ++N+TL + + ++ Q+++ IG + I
Sbjct: 67 LSGIEKLNTTLGSISGQISTSQNLQSTTLIGHGVMVDGSQI 107
>gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum
magnetotacticum MS-1]
Length = 277
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS-- 83
+ FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+K AQ S
Sbjct: 36 NTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQQTAQTSQG 95
Query: 84 -SYIGKNITNAD 94
SY+G+ + A
Sbjct: 96 ISYLGQTVEVAG 107
>gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
MED92]
gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
MED92]
Length = 235
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
N T+ S S S+ D F++L+I Q+++QDPT P ++ + Q+A SQ+E
Sbjct: 16 NTQNQTKSTQSSSTSQSQEDSDMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESIN 75
Query: 65 QMNSTL----QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
+ T+ Q +L S QASS +G+++ A + V + + G + +E
Sbjct: 76 NLTQTVQSTSQSMLASQAALQASSMVGQSVYIAGDTAE-VGTVVNPYAKGSFNLDSSASE 134
Query: 121 IPI 123
+ I
Sbjct: 135 VRI 137
>gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH]
gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH]
Length = 223
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
L +DAF+KL + +++ QDPT+PM + + Q A S ME + M +L L L
Sbjct: 21 PDSQLDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNLSNVLS 80
Query: 76 SNNLAQASSYIGK---------NITNADGSI 97
+ + S IGK N+T+ D S+
Sbjct: 81 TTSQFSTLSAIGKMADTGYRYVNVTDDDNSV 111
>gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31]
gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31]
Length = 232
Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M + N + + S++ + FLKLL TQ+K+QDP P S+ +Q+ + +
Sbjct: 1 MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60
Query: 61 EQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93
EQ + N L L+ + +++ + +GK +T
Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVTAE 96
>gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654]
gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654]
Length = 227
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
E KSKS + + FLK+L Q+++QDP P+++S+ QLA FS +EQ VQ N L+
Sbjct: 23 EDPKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKA 82
Query: 73 LLKSNNLAQASSYIG 87
L + S G
Sbjct: 83 LQTQLGVMSMSDLAG 97
>gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 230
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
L FL LL TQ+K+QDP P+ ++ A +A FS + Q+N+T+ +
Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSD 90
Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
+ ++ L S++IGK T+ DG+ +G V +S ++ ++
Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKV 145
>gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis KIM
10]
gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis
biovar Microtus str. 91001]
gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis
Antiqua]
gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis
Nepal516]
gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis
Pestoides F]
gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125]
gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis
Angola]
gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1]
gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis
CO92]
gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
Pestoides A]
gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
biovar Orientalis str. India 195]
gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
Nepal516]
gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis
Z176003]
gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10]
gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Microtus str. 91001]
gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516]
gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis
Antiqua]
gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis CO92]
gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F]
gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125]
gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
Nepal516]
gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
Pestoides A]
gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis
D106004]
gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis
D182038]
gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27]
gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis
Z176003]
gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 218
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A
Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60
Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
SQ++ + M L+ + ++ +G+ + I+
Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106
>gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ]
gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ]
Length = 223
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
+ DAFLKL I QI++QDP P ++ ++Q++ +Q+EQS + L LL + +
Sbjct: 27 MDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQSNSLA 86
Query: 80 AQASSYIGKNITNADGSI 97
+ IGK+I S+
Sbjct: 87 LSSVGLIGKDIVALGDSL 104
>gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
Length = 183
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
+L Q+K+QDP P+++++ QLA FSQ+EQ V N L L L + L Q + ++G
Sbjct: 1 MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60
Query: 88 KNITNA 93
+ A
Sbjct: 61 REARVA 66
>gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
Length = 218
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82
+ F+ LL+ QI++QDP P +E V+Q+A SQ++ + M L+ QA
Sbjct: 31 NQFMTLLVAQIQNQDPLNPTDGTEFVSQMAQLSQVQSTENMAKLLKSNTVQMEKMQAMAT 90
Query: 83 SSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVD-NTEIPITTGIR 128
++ +G+N+ G+I SG + Q +S + +T E PI G +
Sbjct: 91 ANLVGQNVMVESGTIELDNKKQSGRLTLQQAASDVVVYLTDTAGREHPINLGEQ 144
>gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum
JL354]
Length = 215
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82
D FLKLL TQ+++QDP +PM+ SE QL +SQ+EQS+Q + L+++L + ++AQ+
Sbjct: 23 DMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSIQQTAALKDILSALSTQDIAQS 82
Query: 83 SSYIGK 88
++++G+
Sbjct: 83 ANFLGQ 88
>gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703]
gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703]
Length = 225
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ F+ LL+ Q+++QDPT+PM S+ QLA S + ++N+TL + L +N + Q
Sbjct: 31 QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90
Query: 82 ASSYIGKNITNADGSIS 98
AS+ IG + SI+
Sbjct: 91 ASTLIGNGVLIEGNSIT 107
>gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis YPIII]
gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII]
Length = 218
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A
Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60
Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
SQ++ + M L+ + ++ +G+ + I+
Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106
>gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia
pseudotuberculosis IP 32953]
gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+]
Length = 218
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A
Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60
Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
SQ++ + M L+ + ++ +G+ + I+
Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106
>gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 158
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
+D F+KL + Q+KHQDP EPMK + + Q+A F+ +EQ M ++ ++ K+
Sbjct: 64 DKDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAKN 116
>gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia
xenovorans LB400]
gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans
LB400]
Length = 240
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
Length = 226
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
L Q FL LL TQ+++QDPT P + + Q+ ++ +++ V N L+ ++ + +
Sbjct: 30 LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89
Query: 83 ---SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ IG+ + GS S V T +T+D + GI I +
Sbjct: 90 LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134
>gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001]
gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001]
Length = 223
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L ++ + + AS
Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKAASASSASG 91
Query: 85 YIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
IG+ IT ADG + + + ++ + I + + T +
Sbjct: 92 LIGRTITADGASTDLADGKATWTLTPERAAAKAVVTIKSSDGTVVATKTTTL 143
>gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
ATCC 12472]
gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
ATCC 12472]
Length = 224
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
N + S + Q+ FL LL Q+ QDP PM S+ +Q+A SQ+ +
Sbjct: 11 ANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSL 70
Query: 67 NSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98
N T+Q+L+ S N +Q A+ IG N+ A +++
Sbjct: 71 NLTMQQLVASQNASQSMMATGMIGNNVLVAGNTLA 105
>gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis
ATCC 43879]
gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis
ATCC 43879]
Length = 507
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ ++ L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGSTAAREKKKESAQIANGLDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSNNLAQ 81
+ T++E+ ++ +Q
Sbjct: 67 MQEENKKTMKEVAQAMKASQ 86
>gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia
thailandensis Bt4]
gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia
thailandensis E264]
Length = 278
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 55 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 114
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 115 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 142
>gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
Length = 221
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 11 QQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
Q + ++ LG+ D FLKLL+ Q+++Q+P +P ++ +QLA F+ +EQ N+
Sbjct: 12 QAAQTTRTTQNDLGKKDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQQTSSNAL 71
Query: 70 LQELLKSNNLAQA-----SSYIGKNITNADGSISGVVNAIQVS 107
LQ+L+ +++ +A +SY+GKN+T I+ A S
Sbjct: 72 LQQLVDASSTQKATSSNGASYLGKNVTVQQDQINYTGTASNFS 114
>gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
98-5491]
gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter
canadensis MIT 98-5491]
Length = 356
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
LG +AF+KL + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++ +
Sbjct: 102 NNGLGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQMTTTMQS 161
Query: 80 AQ 81
Q
Sbjct: 162 MQ 163
>gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus
coahuilensis m4-4]
Length = 94
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ I++ + + + + + LGQDAF+K+L+ ++++QDP PM+ + +AQLA FSQ+
Sbjct: 3 ISIDSNLLLSTYQNEQRQVDNKLGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQL 62
Query: 61 EQSVQMNSTLQELLKSNNLAQASSY 85
E+ M+ +L + Q S+
Sbjct: 63 EELTGMSDSLDSMNAIQQQNQLLSF 87
>gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
16294]
gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
16294]
Length = 220
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
K LG+D F+KLL+ Q+++QDPTEPM + + Q + + +E + + L++L S
Sbjct: 23 PKGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLG 82
Query: 79 LAQ---ASSYIGKNITNADGSIS 98
AQ S IGK +I+
Sbjct: 83 NAQQFSTISAIGKTADLGSDAIA 105
>gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia tasmaniensis
Et1/99]
gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
tasmaniensis Et1/99]
Length = 223
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LL+TQ+K+QDPT PM S+ QLA + + ++N+TL + + S Q
Sbjct: 31 QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90
Query: 82 ASSYIGKNITNADGSI 97
AS+ IG + I
Sbjct: 91 ASTLIGHGVMVNGSQI 106
>gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
Length = 225
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
+ + + + S + +LG FL LLITQ+++QDPTEP+ +E V Q+ FSQ+E
Sbjct: 11 SLLTASSETADTSTASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLT 70
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
+ L E L +++ A SY+GK + + S+S
Sbjct: 71 SIEDKLDELTSSLSASSTTSAISYLGKEVEASGYSLS 107
>gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
Length = 240
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLTSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia
thailandensis MSMB43]
Length = 268
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T N + S L Q FLKLL+TQ+++QDPT P+ +S+ +QLA + +
Sbjct: 38 TNANSNVASSLSTTSAADL-QTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 96
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
Q+N+ L L + ++ QA+ IG N+ ++
Sbjct: 97 QLNTALTSLSSQITASQQTQAAMLIGSNVLAPGNTV 132
>gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula
marina DSM 3645]
gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula
marina DSM 3645]
Length = 169
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
D FLKL+I ++++QDP EPMK SE + Q+ + + Q+++TL +L N+ A++
Sbjct: 1 MDQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATT 60
Query: 85 YIGKNI---TNADGSISGVVNAIQVSST 109
IG + T+ + GVV Q++
Sbjct: 61 LIGGQVQALTDQGDVVFGVVTGAQITPN 88
>gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
Length = 235
Score = 70.0 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ + +++ +FL LL TQ+ HQ+P +P+ ++ QL F+Q+EQ ++ N+ L+
Sbjct: 26 KPSASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKGNTLLE 85
Query: 72 ELL---KSNNLAQASSYIGKNITNADGSIS 98
L+ KS QA +G+ S
Sbjct: 86 RLVEAQKSTQSTQALMLVGRTAVVDGSEAS 115
>gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
Length = 226
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGATTDLTNG 112
>gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
Length = 230
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ--- 81
Q+ FL LL TQ+K QDP PM+ +E +Q+A SQ+ ++ ++ LL+S Q
Sbjct: 34 QNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLENLSKSINSLLQSQYGTQSLL 93
Query: 82 ASSYIGKNITNADGSIS 98
A+S +GK+ +++
Sbjct: 94 AASLVGKSAMIDGNTLT 110
>gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium
extorquens DM4]
gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens DM4]
Length = 226
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGAATDLTNG 112
>gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
Length = 224
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQA 82
+ FL LL QIK+QDP PM +++ QL ++ +EQ ++ N L+ L L + N+A +
Sbjct: 29 YETFLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASS 88
Query: 83 SSYIGKN 89
+ IGK
Sbjct: 89 VNMIGKT 95
>gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia
billingiae Eb661]
gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
billingiae Eb661]
Length = 223
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FL LL+TQ+++QDPT PM S+ QLA + + ++N+TL + + S Q
Sbjct: 31 QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90
Query: 82 ASSYIGKNITNADGSI 97
A++ IG + +
Sbjct: 91 ATTLIGHGVMVDGTQV 106
>gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 213
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q QM +
Sbjct: 68 ADDKMVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQM-------AYNA 120
Query: 78 NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+S +GK ++ A ++S G+V+ + + I VD + + I
Sbjct: 121 KSTYVTSLVGKYVSAAKFTVSGELKKSEGLVDKVSLLDE-KFVIYVDGEAYDMDEIMEI 178
>gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
Length = 228
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82
+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M +Q LL + +
Sbjct: 41 NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMAMLMQNSMVLLDNMQVLST 100
Query: 83 SSYIGKNITNADGSIS 98
+ +G+ + +
Sbjct: 101 AGLVGQTVYVSANEFE 116
>gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio
furnissii CIP 102972]
Length = 234
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + + + + + S +L + F+ L++ Q+++QDP P ++ V QLA F+Q++ +
Sbjct: 15 TVQSASTKTTTNANSTSSL-YNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTD 73
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTA 113
M S L ++ + + + +G++++ + +G+ +G + S+T
Sbjct: 74 NMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEGTYNGSIELTSSSNTVTLE 133
Query: 114 ITVDNTEIP 122
+ + +
Sbjct: 134 LVDEAGNVT 142
>gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
Length = 240
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123
>gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp.
B510]
Length = 251
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
T P + + K LG + FL +L TQ+K+QDP +P+ ++ QL F+ +EQ
Sbjct: 34 TSKTPQTDAQKTASATKGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVEQ 93
Query: 63 SVQMNSTLQELLKSNNLAQAS---SYIGKNITNADGSI 97
++ NS L +L++ + AS +Y+G+ + +
Sbjct: 94 NIGTNSRLDKLVQLQSAGTASTNLAYLGRTVAFQGDTF 131
>gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia
phytofirmans PsJN]
gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN]
Length = 240
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 47 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S++
Sbjct: 107 AALLIGSTVLAPGSSVA 123
>gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
Length = 230
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + +
Sbjct: 15 NSSSGTNTNATSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD-----GSISGVVNA 103
+N+TL + + S+ QASS IG + GS GVV
Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNVLAGSKDGVVTT 120
>gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp.
TJI49]
Length = 229
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 3 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 62
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ +++
Sbjct: 63 TSLSTQLAAGQQTQAALLIGSNVLAPGNTVA 93
>gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
Length = 235
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L ++ AQ
Sbjct: 42 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101
Query: 82 ASSYIGKNITNADGSIS 98
++ IG + S++
Sbjct: 102 SALLIGSTVLAPGNSVT 118
>gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus
subsp. fetus 82-40]
gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus
82-40]
Length = 263
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ + L +DAFLKLL+ ++++QDPTEPM +++ + Q + + +E N +++
Sbjct: 35 SGTGTNPYSQLDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKVMKQ 94
Query: 73 L---LKSNNLAQASSYIGK 88
L ++S+ A S +GK
Sbjct: 95 LTTQMQSSLSMTAMSALGK 113
>gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
Length = 227
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
TQ E S + + FLK+L Q+++QDP P++ ++ QLA FS +EQ V+ N
Sbjct: 20 STQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTDFAVQLATFSTVEQQVRTND 79
Query: 69 TLQEL 73
L L
Sbjct: 80 LLGAL 84
>gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia J2315]
gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia cenocepacia
J2315]
Length = 234
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + +
Sbjct: 6 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 65
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N++L L L + QA+ IG N+ S++
Sbjct: 66 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 102
>gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum
CM4]
Length = 226
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGATTDLTNG 112
>gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia
thailandensis TXDOH]
Length = 289
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 66 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 125
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 126 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 153
>gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae
12198]
gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter
mustelae 12198]
Length = 279
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ +
Sbjct: 23 PKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASA 82
Query: 77 NNLAQASS 84
+ S+
Sbjct: 83 MQSTKESN 90
>gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
Length = 243
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + SIS
Sbjct: 110 AALLIGSTVLAPGSSIS 126
>gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
8052]
gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
8052]
Length = 339
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 3 INTEVNPTQQEFSK--SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+N + T +K K+ T+ +++FLK+L Q+ + DPT+ +S V+Q+A F+ M
Sbjct: 13 VNVVSSGTTDRGTKILRKTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASM 72
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTA-I 114
EQ +N+T+ + +G+ + + I G V + S G +
Sbjct: 73 EQMQNLNTTMSDSSYQQ-------MVGRTVITNEKDNNGSYIQGYVTQVLKESGGTYLNM 125
Query: 115 TVDNTEIPIT 124
V+ E I
Sbjct: 126 LVNGKEAKIA 135
>gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens AM1]
gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms :
FlgD flaV, fla FIV, fla FVI) [Methylobacterium
extorquens AM1]
Length = 226
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L +L ++ + + AS
Sbjct: 35 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLDTILTNSKAASASSASG 94
Query: 85 YIGKNITNADGSISGVVNA 103
IG+ IT ADG+ + + N
Sbjct: 95 LIGRTIT-ADGAATDLTNG 112
>gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
Length = 243
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + + +Q
Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109
Query: 82 ASSYIGKNITNADGSIS 98
A+ IG + S+S
Sbjct: 110 AALLIGSTVLAPGSSVS 126
>gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis
HS1]
gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis
HS5]
gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis
HS5]
gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis
HS1]
Length = 446
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + ++Q A SQ+E
Sbjct: 19 EVTGAKAAMEKKKHEPKVANGLNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVE 78
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVN 102
+ ++E+ + + ++ K++ ++ G + +
Sbjct: 79 MQEENKKAMKEVADAMQSTKETN---KSLKDSQGKLQDTLE 116
>gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703]
Length = 219
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA--- 82
+ F+ LL+ QI++QDP PM +E V Q+A SQ++ + M L+ QA
Sbjct: 32 NQFMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQVQSTENMAKMLKSNTVQMERVQAMAT 91
Query: 83 SSYIGKNITNADGSIS 98
+ +G+ + +
Sbjct: 92 VNLVGQQVMVESDEVE 107
>gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
WH6]
gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
WH6]
Length = 241
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E
Sbjct: 24 TDNSSLGDASKAATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83
Query: 65 QMNS---TLQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTA 113
+N + S+ QASS +G++I + S++G V +
Sbjct: 84 TLNDSVNNISSNFSSSQALQASSLVGRSIIPQTDKALVDTSKSMTGSVAVTAATGNVAVK 143
Query: 114 ITVDNTEI 121
IT + +
Sbjct: 144 ITDKDGNV 151
>gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
Length = 230
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
+ S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + +
Sbjct: 15 NSTSGTNSTAASGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+N+TL + + S+ QASS IG + ++
Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109
>gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas
mendocina ymp]
gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
Length = 225
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQELLKSNNLAQA 82
+ FL L++ QI++QDPT+P+ ++E + Q A SQ+ E ++ + LL + A
Sbjct: 34 NNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKSNLVLLDNLQTLTA 93
Query: 83 SSYIGKNITNADGSISGVVNAIQ 105
+ +G+ + A + + ++
Sbjct: 94 AGLVGQEVKVATEKLELGADKVK 116
>gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia
pseudotuberculosis IP 31758]
gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia
pseudotuberculosis IP 31758]
Length = 218
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQA 82
+ F+ LL+ QIK+QDP P +E V+Q+A SQ++ + M L+ +
Sbjct: 31 NQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTVQMAKMQTMAT 90
Query: 83 SSYIGKNITNADGSIS 98
++ +G+ + ++
Sbjct: 91 ANLVGQQVMVESNEMT 106
>gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum
JL354]
Length = 102
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + ++ ++ LGQ FL+LL Q++ QDP EP+ E +AQ+A FS + +
Sbjct: 11 TSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMAQFSSLAGTA 70
Query: 65 QMNSTLQELLKSNNLAQASS 84
+ N+TL+++++ + A++
Sbjct: 71 ETNTTLEKIVEKLDALIAAT 90
>gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
Length = 230
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + + L Q++FL LL+ Q+K+QDPT PM+ +E QLA + +
Sbjct: 15 TNATGANSTTGSGSTSQDL-QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIE 73
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
++N+TL + + S+ QASS IG + ++
Sbjct: 74 KLNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTTV 109
>gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 113
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
+ L + F+ L++T++ HQDP +PM+ +E Q++ F+ + +N + L S +L
Sbjct: 25 DQGLEMEDFMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFTGLSSSMHL 84
Query: 80 AQASSYIGKNITNADG 95
++ G+ A G
Sbjct: 85 RSGAT--GRQFVGAPG 98
>gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37]
gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37]
Length = 188
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
+L Q+++QDP P+ ++E QLA FS +EQ VQ N L+ + L N+L + +IG
Sbjct: 1 MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60
Query: 88 KN 89
Sbjct: 61 ME 62
>gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia
ambifaria MC40-6]
gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6]
Length = 248
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ ++
Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115
>gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia
phymatum STM815]
gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815]
Length = 237
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL+LLI Q+K+QDPT PM +S+ +QLA + + Q+NS+L L L +N Q
Sbjct: 44 QNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTGIGQLNSSLTSLASQLTTNQQTQ 103
Query: 82 ASSYIGKNITNADGSIS 98
A++ I + S S
Sbjct: 104 AANLINSTVLAPGDSFS 120
>gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
15264]
gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
15264]
Length = 222
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ T+ + ++ +L + FL LL +Q+K+QDP P+ +++ QL S +
Sbjct: 2 VDAVTTTTEAASRTTAARTSLTSNFETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGV 61
Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92
EQ + N L + L A++YIGK+ T
Sbjct: 62 EQQLMTNDLLTSLLAAQQGGGLGGAANYIGKDATA 96
>gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia
ambifaria AMMD]
gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD]
Length = 248
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TSNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ ++
Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115
>gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
Length = 220
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
KS + FL+L I Q+++QDP P A+ + QL+ S +EQS + L LL +
Sbjct: 19 KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78
Query: 78 N---LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
N + S+IGK + + I T ++ + + T + IS+
Sbjct: 79 NNSLSMGSVSFIGKTVKANG-------DDIVFDGTSSPSLQYNLSSASAATTLTISD 128
>gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
Length = 245
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TNNVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ ++
Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGNGVA 115
>gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia AU 1054]
gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia HI2424]
gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054]
gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424]
Length = 248
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + +
Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N++L L L + QA+ IG N+ S++
Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 116
>gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter
pullorum MIT 98-5489]
gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter
pullorum MIT 98-5489]
Length = 379
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT T + + LG +AF++L + Q+K+QDPT PM+ E + Q A +Q+E
Sbjct: 98 NTFPGDTPIIKDEEEDNNGLGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQ 157
Query: 64 VQMNSTLQELLKSNNLAQ 81
QM + ++++ + Q
Sbjct: 158 TQMKNAMEQMTTTMQSMQ 175
>gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2M]
gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2]
gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD1]
gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD1]
gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2]
gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans
CGD2M]
Length = 247
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ +++
Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGDTVA 115
>gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160]
gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160]
Length = 237
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N + + S S + + Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++
Sbjct: 22 MNGTSSSSSSTSSTSGTSASDLQNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQG 81
Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+N++L L L + +QA+ IG + ++ SI+
Sbjct: 82 ISNLNTSLSSLSTQLTAGQQSQAALLIGSTVLSSGNSIT 120
>gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
Length = 248
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ ++
Sbjct: 85 TSLSSQLAAGQQTQAALLIGTNVLAPGNGVA 115
>gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
Length = 248
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ ++
Sbjct: 85 TSLSTQLAAGQQTQAALLIGTNVLAPGNGVA 115
>gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas
mendocina NK-01]
Length = 225
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQELLKSNNLAQA 82
+ FL L++ QI++QDPT+P+ ++E + Q A SQ+ E ++ + LL + A
Sbjct: 34 NNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKSNLVLLDNLQTLTA 93
Query: 83 SSYIGKNITNADGSISGVVNAIQ 105
+ +G+ + A + + ++
Sbjct: 94 AGLVGQEVKVATEQLELGTDKVK 116
>gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas
fluorescens SBW25]
gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas
fluorescens SBW25]
Length = 241
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E
Sbjct: 24 TDNSSVGDAAKSATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83
Query: 65 QMNS 68
+N
Sbjct: 84 TLND 87
>gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
Length = 228
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q
Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 91
Query: 82 ASSYIGKNITNAD-----GSISGVVNAIQV------SSTGLTAITVDNTEIPITTGI 127
ASS IG + GS GVV ++ +TA D+ + + T
Sbjct: 92 ASSLIGHGVMIPGTNVLAGSKDGVVTTTPFGVELERAADKVTATISDSNGVAVRTIE 148
>gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia
multivorans ATCC 17616]
gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia
multivorans ATCC 17616]
gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC
17616]
gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia
multivorans ATCC 17616]
Length = 247
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ +++
Sbjct: 85 TSLSTQLAAGQQTQAALLIGSNVLAPGNTVA 115
>gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060]
gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060]
Length = 228
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 7 VNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
N T S S T+ + FL LL TQ+++Q+P +P+ ++ QL F+ +EQ +
Sbjct: 12 ANRTGGSASPSSDAATIAGNFNQFLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQL 71
Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNA 103
+ N L LL K++ A A+ +G+ +T ADG+ + +
Sbjct: 72 KTNDRLDSLLTASKASAAATAAGLVGQTVT-ADGTTAALAKG 112
>gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia
cenocepacia MC0-3]
gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
Length = 248
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + +
Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79
Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
Q+N++L L L + QA+ IG N+ S++
Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSVA 116
>gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis C6786]
Length = 282
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q
Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130
Query: 82 ASSYIGKNITNADGSI 97
A+ IG N+ ++
Sbjct: 131 AAMLIGSNVLAPGNTV 146
>gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis EO147]
Length = 282
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q
Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130
Query: 82 ASSYIGKNITNADGSI 97
A+ IG N+ ++
Sbjct: 131 AAMLIGSNVLAPGNTV 146
>gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter
pylori India7]
Length = 306
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 1106a]
gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei DM98]
gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a]
gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
Length = 280
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144
>gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
Length = 280
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144
>gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
6946]
gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
6946]
Length = 229
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
D FL+LL+T+++HQDPT+PM + + + Q A S +E S + L+EL L +N A
Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEELSDQLSANTNFSA 91
Query: 83 SSYIGKNITNADGSIS 98
IG+ + +I+
Sbjct: 92 IGVIGQMASLGSSAIT 107
>gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter
acinonychis str. Sheeba]
gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str.
Sheeba]
Length = 292
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum
AIU301]
gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum
AIU301]
Length = 253
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LA 80
+ FL +L TQ+++QDPT PM +S+ ++L FSQ+EQ + N +L +LL+ L
Sbjct: 62 NYNDFLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGDLT 121
Query: 81 QASSYIGKNITNAD 94
QASS +G +T
Sbjct: 122 QASSMLGSKVTATS 135
>gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27]
gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27]
Length = 316
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter
pylori Lithuania75]
Length = 316
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
Length = 224
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQD---AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
+N +++PT S + QD FL +L+TQ+K+QDPT PM S+ QLA +
Sbjct: 7 VNEKLDPTVLSSSSTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINT 66
Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
+ ++N+TL + + ++ Q+S+ IG + G I
Sbjct: 67 LSGIEKLNTTLGSISGQISTSQSLQSSTLIGHGVMVNGGQI 107
>gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
Length = 230
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 93
Query: 82 ASSYIGKNITNAD-----GSISGVVNA 103
ASS IG + GS G V
Sbjct: 94 ASSLIGHGVMIPGTAIFTGSKDGTVTT 120
>gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp.
383]
gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383]
Length = 251
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++L
Sbjct: 25 TNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTSL 84
Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98
L L + QA+ IG N+ +++
Sbjct: 85 TSLSTQLTAGQQTQAALLIGTNVLAPGNAVA 115
>gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641]
gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641]
Length = 230
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q
Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAISGQIDSSQSLQ 93
Query: 82 ASSYIGKNITNADGSI 97
ASS IG + SI
Sbjct: 94 ASSLIGHGVMIPGTSI 109
>gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter
hepaticus ATCC 51449]
gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC
51449]
Length = 273
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSNNLAQ 81
Q T+ E+ ++ Q
Sbjct: 67 MQEQNKKTMVEVAEAMKSTQ 86
>gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter
pylori B38]
gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38]
Length = 306
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter
pylori 26695]
gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori
26695]
Length = 301
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
Length = 233
Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T T+ + + + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ +
Sbjct: 10 TGSAGTKTNTASDSATIAGNFNQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQL 69
Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
+ N L ++ K+ + A+ +GK +T + +
Sbjct: 70 KTNDRLDTMVAASKAATASSAAGLVGKTVTADGATAA 106
>gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 236
Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA +
Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
++N+T+ + N Q S+ IG+++ + I
Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118
>gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD
gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp.
(strain APS)
gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
Length = 236
Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA +
Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
++N+T+ + N Q S+ IG+++ + I
Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118
>gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter
pylori HPKX_438_AG0C1]
Length = 311
Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGSKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum
magnetotacticum MS-1]
Length = 223
Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASS 84
FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L ++ + AS
Sbjct: 32 FLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAASSASG 91
Query: 85 YIGKNITNADGSIS 98
IG+ + ADG+ +
Sbjct: 92 LIGRTVV-ADGATT 104
>gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei MSHR346]
gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei MSHR346]
Length = 280
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTL 144
>gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
Length = 341
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter
pylori Cuz20]
Length = 319
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
Length = 236
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA +
Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80
Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
++N+T+ + N Q S+ IG+++ + I
Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118
>gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
horse 4]
gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei
SAVP1]
gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei
NCTC 10229]
gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei
NCTC 10247]
gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei
ATCC 23344]
gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei
PRL-20]
gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
10399]
gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei
2002721280]
gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei
SAVP1]
gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
10229]
gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
10247]
gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei
2002721280]
gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
10399]
gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
horse 4]
gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei
PRL-20]
Length = 277
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144
>gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter
pylori Gambia94/24]
Length = 301
Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter
pylori F16]
Length = 311
Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A]
Length = 316
Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
23344]
Length = 255
Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 35 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 94
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 95 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 122
>gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83]
Length = 319
Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter
pylori SouthAfrica7]
Length = 382
Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPQIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913]
gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913]
Length = 217
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 1 MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M++N+ V + S FL+LL+ QI +Q+P +PM ++ V+QLA
Sbjct: 1 MQVNSAVPSAADATKNTTNIAGNSSADEMSTMFLELLVAQISNQNPLQPMDGTQYVSQLA 60
Query: 56 VFSQMEQSVQMNSTLQ---ELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAI 104
FS +E + + + S + +A++ +G+ + DGS+SG+VN
Sbjct: 61 EFSNVESLQSIRQNTADGLDYVSSLAVLEATNMVGQTVDVQASSIALEQDGSVSGMVNLG 120
Query: 105 QVSSTGLTAITVDNTEI 121
+ + + + + E+
Sbjct: 121 EAADSVTVQLYNQDGEL 137
>gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter
pylori P12]
gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12]
Length = 339
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter
pylori Sat464]
Length = 309
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 668]
gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia
pseudomallei 1710b]
gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 14]
gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 9]
gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei B7210]
gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 7894]
gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei NCTC 13177]
gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 112]
gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei BCC215]
gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
9]
gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
52237]
gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
52237]
gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
9]
gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
Length = 280
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 57 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 116
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 117 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 144
>gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter
pylori PeCan4]
gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter
pylori PeCan4]
Length = 306
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
14796]
gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
14796]
Length = 139
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
+AFL LLI Q+K+QDP + M +E + +L+ + +Q M++++Q + + N A++
Sbjct: 32 NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91
Query: 86 IGKNI--TNADGSI-SGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
IGK I T AD S S V + + + + + + + I +++ + +S
Sbjct: 92 IGKKIQYTAADNSTQSATVTQVTIKNGNPSLVLDNGSTINLSSVVSVS 139
>gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 279
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+E + S + ++L D FLK+++ QIK+QDPT P+ + Q+ ++N ++Q
Sbjct: 71 KEINNSNNLQSLT-DNFLKMILVQIKNQDPTHPIDNNHLTTQMTQMHTALGIEKLNKSIQ 129
Query: 72 ELLKSNNLAQA---SSYIGKNITNADGSI 97
E+ ++ N +Q S++IGK + I
Sbjct: 130 EIKQTMNNSQYINLSNWIGKTVMIEGNPI 158
>gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter
pylori Shi470]
gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter
pylori Shi470]
Length = 324
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter
pylori HPAG1]
gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1]
Length = 327
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter
pylori SJM180]
gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter
pylori SJM180]
Length = 346
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 91]
Length = 283
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 60 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 119
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 120 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 147
>gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia
pseudomallei K96243]
Length = 283
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 60 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 119
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 120 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 147
>gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 908]
gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 2018]
gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter
pylori 2017]
Length = 325
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia
ubonensis Bu]
Length = 250
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
N + S + + Q FLKLL+TQ+K+QDPT P+ +S+ +QLA + + Q
Sbjct: 24 NTNKVSTTGTLSTTSASDLQSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQ 83
Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
+NS+L L L + QA+ IG N+ ++
Sbjct: 84 LNSSLTSLSTQLTAGQQTQAAMLIGTNVLAPGNGVA 119
>gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d]
Length = 316
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter
pylori F32]
Length = 329
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia
pseudomallei K96243]
Length = 261
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N+ L
Sbjct: 38 ASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTALTS 97
Query: 73 L---LKSNNLAQASSYIGKNITNADGSI 97
L L + QA+ IG N+ ++
Sbjct: 98 LSSQLTAGQQTQAAMLIGSNVLAPGNTV 125
>gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
2831]
Length = 228
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASS 84
FL LL TQ+K+Q+P +PM ++ QL F+ +EQ ++ N L +L +S + A A+S
Sbjct: 35 FLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSASQSASSASATS 94
Query: 85 YIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
YIGK ++ + GS S +N + +S + + + T +S
Sbjct: 95 YIGKTVSADGSASQLSGGSASWTLNPARAASKAVITVLDSKNNVVATQTTALS 147
>gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter
pylori F57]
Length = 321
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter
pylori J99]
gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter
cinaedi CCUG 18818]
Length = 273
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSNNLAQ 81
Q T+ E+ ++ Q
Sbjct: 67 MQEQNKKTMVEVAEAMKSTQ 86
>gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia
vietnamiensis G4]
gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4]
Length = 248
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN--- 67
+ S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N
Sbjct: 25 TNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSSL 84
Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSIS 98
S+L L + QA+ IG N+ +S
Sbjct: 85 SSLSTQLAAGQQTQAALLIGTNVLAPGNDVS 115
>gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter
pylori 52]
Length = 354
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
Length = 324
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVANAM 82
>gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
Length = 176
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 50/107 (46%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ S + K TL ++ KLL Q+ +QD + PM S+ + Q++ + ++ + +
Sbjct: 21 TKATSVTTDKNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQMSQMAMVQSLTALTEST 80
Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+ + + A+ IGK +T S + +Q S T ++V+
Sbjct: 81 KSATSMSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVN 127
>gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas stutzeri
DSM 4166]
Length = 221
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q + + + S T ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++ M S
Sbjct: 19 QVKRAVNVSDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTSLA 78
Query: 71 QE---LLKSNNLAQASSYIGKNITNA 93
Q L+ + A+ +G+ + A
Sbjct: 79 QNNLVLMDNLQTLTAAGLVGQQVRVA 104
>gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter
pylori F30]
Length = 329
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAVQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51]
Length = 334
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E
Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66
Query: 62 QSVQMNSTLQELLKSN 77
+ T+QE+ +
Sbjct: 67 MQEENKKTMQEVASAM 82
>gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD
gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 226
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQ 81
Q FL LL+ Q+K+QDPT+P+K SE +QLA + ++NST + + Q
Sbjct: 32 QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNIQ 91
Query: 82 ASSYIGKNITNADGSI 97
SS IG ++ I
Sbjct: 92 VSSLIGHHVMIPSSQI 107
>gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
Length = 156
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
E+++ + Q+++++ S L + FLKL++ Q+K QDPT+P + + Q S ++
Sbjct: 5 EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64
Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS 108
++ M+++++ L + ++L+ A++ I K + + +G++ + VS
Sbjct: 65 TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKSYAVSG 114
>gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
Length = 101
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+
Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83
Query: 71 QEL---LKSNNLAQASSY 85
+ L + SN QASS
Sbjct: 84 ESLNSSMTSNQALQASSL 101
>gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii
NCTC 11218]
Length = 164
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + + + + + S +L + F+ L++ Q+++QDP P ++ V QLA F+Q++ +
Sbjct: 15 TVQSASTKTTTNANSTSSL-YNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQVQSTD 73
Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTA 113
M S L ++ + + + +G++++ + +G+ +G + S+T
Sbjct: 74 NMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEGTYNGSIELTSSSNTVTLE 133
Query: 114 ITVDNTEIP 122
+ + +
Sbjct: 134 LVDEAGNVT 142
>gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter
cancerogenus ATCC 35316]
gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter
cancerogenus ATCC 35316]
Length = 234
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ T + + + + F+KLL+ QI++QDP P +E V QLA +Q++
Sbjct: 11 SDTATTTDSGIAPNDNSAAGMTNLFMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSM 70
Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSI 97
M +Q L+ + + +G+ + ++
Sbjct: 71 ENMTVGMQNIGVLMDNLQTLSTGNLVGQKVMVQTDTL 107
>gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis]
Length = 97
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 44 PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVV 101
PM+ ++ VAQ+A F+ +EQ ++ + ++L + ++A + +GK + DGSI SGV+
Sbjct: 3 PMEDTQFVAQMAQFTSLEQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVI 62
Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRI 129
A + + + VD +T +
Sbjct: 63 TA--ATRGEIPQVQVDGKWYDWSTVKTV 88
>gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12]
gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12]
Length = 232
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA
Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97
Query: 83 SSYIGKNITNADGSIS 98
++ +G+ + + SIS
Sbjct: 98 ANLVGQTVVFDNNSIS 113
>gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium
violaceum ATCC 12472]
gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
ATCC 12472]
Length = 225
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ K+ G D F+ LL+ QI++Q P +P S+ V+QLA SQM+ + M LQ
Sbjct: 26 AAGKNGAQPGNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQSTQDMLKQLQSQG 85
Query: 75 KSNNLAQASSY---IGKNI 90
Q + +GK +
Sbjct: 86 AMLRELQGVALGAQVGKPV 104
>gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
Length = 100
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
M IN N F + + +GQ FL+L+ Q+ QDP P+ +E VAQ+A FS +
Sbjct: 1 MSINGISNN-NPVFHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSL 59
Query: 61 EQSVQMNSTLQELLKSNNL 79
+ N+ L ++ +
Sbjct: 60 AGISETNTVLAQISEQLAA 78
>gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103]
gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103]
gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis AJ13355]
Length = 223
Score = 65.0 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL + + ++ Q
Sbjct: 31 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 90
Query: 82 ASSYIGKNITNADGSI 97
+S+ IG + I
Sbjct: 91 SSTLIGHGVMVNGSQI 106
>gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp.
3As]
Length = 232
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA
Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97
Query: 83 SSYIGKNITNADGSIS 98
++ +G+ + + S+S
Sbjct: 98 ANLVGQTVVFDNNSLS 113
>gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae
BGR1]
gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1]
Length = 258
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
V+ + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+
Sbjct: 20 VDTMSNNSGVASTSASDLQQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL 79
Query: 67 N---STLQELLKSNNLAQASSYIGKNITNADGSIS 98
N S+L + + QA+ IG N+ ++S
Sbjct: 80 NSSLSSLSSQITAGQQTQAALLIGSNVLAPGSTLS 114
>gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
Length = 229
Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
++S SK FL +L TQ+K+Q+P P +E QL +SQ+EQ + N L
Sbjct: 17 TSTSAESLSKLDENYKLFLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGNQYL 76
Query: 71 QELL---KSNNLAQASSYIGKNITNADGS 96
+ L+ + A +++GK + +
Sbjct: 77 ENLVLSTNNQTAETALAFVGKEVVYTSDN 105
>gi|257866384|ref|ZP_05646037.1| predicted protein [Enterococcus casseliflavus EC30]
gi|257873100|ref|ZP_05652753.1| predicted protein [Enterococcus casseliflavus EC10]
gi|257800342|gb|EEV29370.1| predicted protein [Enterococcus casseliflavus EC30]
gi|257807264|gb|EEV36086.1| predicted protein [Enterococcus casseliflavus EC10]
Length = 143
Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSVQM 66
+++K + D FLK+L + + + ++ ++QL F+ +E ++
Sbjct: 15 TSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLNEL 74
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPIT 124
+ TL + QA S I K +T DG ++SG + ++ + G I V+ E ++
Sbjct: 75 SETLTTSVILQQQQQAFSLINKQVTLMDGIETLSGTIEKVRF-ANGYATIVVNGKEYSMS 133
Query: 125 TGIRIS 130
I
Sbjct: 134 AIQEIG 139
>gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10]
gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10]
Length = 221
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
++ + + T + S++ + FL LL Q+K+QDP P+ +++ V QL FS +
Sbjct: 2 VDAVSGLGATSPSLANSQTGLADNFEMFLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSV 61
Query: 61 EQSV 64
EQ +
Sbjct: 62 EQQI 65
>gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella
succinogenes DSM 1740]
gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
Length = 270
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
+ TL +DAF++L + Q+K QDPT PM+ + + Q A+ +Q+EQ +M TL
Sbjct: 20 AQNNNGTLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTLSS 76
>gi|257871295|ref|ZP_05650948.1| predicted protein [Enterococcus gallinarum EG2]
gi|257875997|ref|ZP_05655650.1| predicted protein [Enterococcus casseliflavus EC20]
gi|325567525|ref|ZP_08144192.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC
12755]
gi|257805459|gb|EEV34281.1| predicted protein [Enterococcus gallinarum EG2]
gi|257810163|gb|EEV38983.1| predicted protein [Enterococcus casseliflavus EC20]
gi|325158958|gb|EGC71104.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC
12755]
Length = 143
Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSVQM 66
+++K + D FLK+L + + + ++ ++QL F+ +E ++
Sbjct: 15 TSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLNEL 74
Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPIT 124
+ TL + QA S I K +T DG ++SG + ++ + G I V+ E ++
Sbjct: 75 SETLTTSVILQQQQQAFSLINKQVTLMDGTETLSGTIEKVRFA-NGYATIVVNGKEYSMS 133
Query: 125 TGIRIS 130
I
Sbjct: 134 AIQEIG 139
>gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD
[Acidithiobacillus caldus ATCC 51756]
gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD
[Acidithiobacillus caldus ATCC 51756]
Length = 231
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQAS 83
F LL+TQ+ +QDP P+ + AQLA FS + S+L L+ N QA+
Sbjct: 40 TFYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAA 99
Query: 84 SYIGKNITNADG 95
S IGK++T +
Sbjct: 100 SLIGKSVTTSGN 111
>gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri
ATCC BAA-895]
gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895]
Length = 227
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84
F++LL+ QI++QDP P +E V+QLA +Q++ M+ + L+ + +
Sbjct: 35 FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQSMETMSQLMANSSVLMDNLQTLTTGN 94
Query: 85 YIGKNI------TNADGSISGVVNAIQVSSTGLTAITVDN 118
+G+++ N+DG + ++G+T + V +
Sbjct: 95 LVGQHVMVQTDAINSDGETTINGRLTLDHASGVTTVIVKD 134
>gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
Length = 117
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
+ +L + FL+L+ Q+ +QDP EP + +AQLA FS +E +TL E+
Sbjct: 29 SAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRATLDEISAKL 88
Query: 78 NLA 80
+
Sbjct: 89 DAL 91
>gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
Length = 187
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 36 IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92
+++QDPT PM ++ +QLA F+ Q+NSTL L+ S A+ ++G+N+
Sbjct: 1 MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNVWI 60
Query: 93 ADGSI 97
S+
Sbjct: 61 EGESV 65
>gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
Length = 71
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
+LGQ FL+LL Q++ QDP P+ E ++Q+A FS + + N++L+ + +L
Sbjct: 2 DSLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERIADQLDLL 61
>gi|262273530|ref|ZP_06051344.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
gi|262222508|gb|EEY73819.1| flagellar basal-body rod modification protein FlgD [Grimontia
hollisae CIP 101886]
Length = 223
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
+ FL +++ Q+++Q+P P ++ + QL + S +E + L L + + + QA
Sbjct: 33 NDFLTMMVAQVQNQNPLNPTDGTQYLTQLGMMSAVESLESVKVGLNNLNIGMTNVEMLQA 92
Query: 83 SSYIGKNI 90
++ +GK +
Sbjct: 93 TNLVGKKV 100
>gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans
621H]
gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans
621H]
Length = 246
Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQA 82
+ FL LL TQ++HQDP+ P A+LA F+ ++Q V+ N+ L L+ + N +A A
Sbjct: 56 NQFLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMASA 115
Query: 83 SSYIGKNITNADGSI 97
S IGK T + S+
Sbjct: 116 VSLIGKTTTASSSSL 130
>gi|163789643|ref|ZP_02184081.1| flagellar hook assembly protein [Carnobacterium sp. AT7]
gi|159875175|gb|EDP69241.1| flagellar hook assembly protein [Carnobacterium sp. AT7]
Length = 143
Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA--------SEQVAQLAVFS 58
+ + S K L + FL+++ IK P+ P ++ ++ +AQLA F+
Sbjct: 9 MGSIKNVSSTEKKNNELATEDFLQIMAASIKT--PSLPGESGGSGGGGETDYLAQLAQFN 66
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAIT 115
++Q ++ TL + Q S +GK + A G ++G V+ ++ G I
Sbjct: 67 TLDQLTTVSETLNMSVLMTQQQQGLSLLGKEVKVAGAESGFVNGTVDKVKFDK-GYATIQ 125
Query: 116 VDNTEIPITTGIRISN 131
V + + + + +
Sbjct: 126 VGGKDYALNDILEVGD 141
>gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 262
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
++L + Q+K+QDPT PM+ E + Q A +Q+E +M ++++ + Q
Sbjct: 1 MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDMTTTMKSMQ 53
>gi|54307269|ref|YP_128289.1| flagellar basal-body rod modification protein FlgD [Photobacterium
profundum SS9]
gi|46911689|emb|CAG18487.1| Hypothetical flagellar basal-body rod modification protein FlgD
[Photobacterium profundum SS9]
Length = 224
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ Q + + + FL +++ QI++Q+P EP ++ + QL + S +E +
Sbjct: 16 STEQNSQQVAGNGMNPSSNQFLTMMVAQIQNQNPLEPADGTQFLTQLGMMSAVESLEGVK 75
Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAIT 115
+ + + + + + QA++ +GK + I G V Q + T +
Sbjct: 76 TGMMNMNIGITNLEMLQATNLVGKKVLMEANQGVDVSEGQIIDGRVQFDQPADTAKVMVY 135
Query: 116 VDNTEI 121
+ ++
Sbjct: 136 DEEGKV 141
>gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555]
gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016]
gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555]
gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 265
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEP--MKASEQVAQLAVFSQ 59
+ +++ + K + + + FLK+L ++++QDPT+ ++E ++QLA FS
Sbjct: 48 DKSSDTTENGTKIVKKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSA 107
Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
++Q + +N+T N + A+S + K +T +D G + + + D
Sbjct: 108 LQQMMNLNNT-------NKVTTANSLVNKYVTLSDRDSEG-----NYITGKVVGVVKDGD 155
Query: 120 EIPITTGIRI 129
++ + I
Sbjct: 156 DVELKLITGI 165
>gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
Length = 241
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 1 MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
M+I VN + + + F +LL+ Q+K+QDP PM+A++ V Q A
Sbjct: 1 MDIQNNVNNVTGVGGSVATPTAGNGEGDVSAMFTRLLVAQVKNQDPLAPMEANQFVTQFA 60
Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86
SQ+E TL L + Q S +
Sbjct: 61 QMSQVEAM----RTLANLSAATARTQESMLV 87
>gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter
pylori HPKX_438_CA4C1]
Length = 95
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
+ L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+
Sbjct: 2 ATTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVAS 61
Query: 76 SN 77
+
Sbjct: 62 AM 63
>gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
Length = 222
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82
+ FL LL+TQ+++Q+P EP ++ V+QL ++ EQ +NS L L S N +
Sbjct: 31 NDFLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNS 90
Query: 83 SSYIGKNITNADGSIS 98
S+YIG+ +T S +
Sbjct: 91 SNYIGQTVTAKADSGT 106
>gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella
longbeachae D-4968]
gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella
longbeachae NSW150]
gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella
longbeachae D-4968]
gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella
longbeachae NSW150]
Length = 224
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
S KK + FL ++ QI++QD + E ++QLA F+ + + M +LQ++
Sbjct: 21 SPLKKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTS 80
Query: 74 LKSNNLAQASSYIGKNI 90
L+SN QAS+ +G+ +
Sbjct: 81 LQSNQALQASALVGRKV 97
>gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
Length = 220
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
+ F LLI QI++QDP PM AS+ V Q A SQ+E + + L L +
Sbjct: 34 NLFTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQVEAMQTL-ANLTALTAGMQESTLVVT 92
Query: 86 IGKNI 90
+G +
Sbjct: 93 LGAQV 97
>gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli
BSR3]
gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli
BSR3]
Length = 259
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
+N T S + S L Q FL LL+TQ+++QDPT P+ +S+ +QLA + +
Sbjct: 14 VNNTPTDTMNANSSNTSAADL-QQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSG 72
Query: 63 SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
Q ++L + + QA+ +G N+ ++S
Sbjct: 73 IAQLNSSLTSLSSQITAGQQTQAAMLVGSNVLAPGNTLS 111
>gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
Length = 224
Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
++ K +LG+D FLKLL+ ++K+QDPT PM + + ++Q + + +E + N L+ L S
Sbjct: 24 NEDKSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83
Query: 77 -NNLAQASSY--IGKNITNADGSI 97
+ Q S IGK +I
Sbjct: 84 LTSSMQYSGISAIGKMADTGSNAI 107
>gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 97
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S +
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71
Query: 64 VQMNSTLQEL---LKSNNLAQASSYI 86
++N+TL + + ++ QA++ I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLI 97
>gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 90
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
LG FLKLL Q+ HQDPT+P+ ++ VAQLA FS + + Q N+ L +
Sbjct: 26 NKLGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQLSTISDQIGKL 85
Query: 81 QASS 84
++
Sbjct: 86 GGTT 89
>gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
Length = 218
Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
FL LL+T++++Q+P +P ++ V+Q+ ++ EQ +N+ L L S N ++
Sbjct: 28 DFLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNST 87
Query: 84 SYIGKNITNADGSIS 98
+YIG+ +T S +
Sbjct: 88 NYIGQTVTAKADSAT 102
>gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 99
Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
+ T + + + +D FL+LL+ QIK+QDP P + + QLA F Q+EQS+ M
Sbjct: 13 SGTSAASTSTGGTSAVTKDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72
Query: 68 STLQEL 73
+ +
Sbjct: 73 QDVTAI 78
>gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas
palustris CGA009]
gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas
palustris CGA009]
Length = 265
Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + +
Sbjct: 75 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 134
Query: 84 SYIGKNITNADGSIS 98
+YIG + + +
Sbjct: 135 NYIGHTVEAKTDTAT 149
>gi|328958278|ref|YP_004375664.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4]
gi|328674602|gb|AEB30648.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4]
Length = 142
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA--------SEQVAQLAVFSQME 61
+ S K+ L + FL+++ IK P+ P + ++ +AQLA F+ ++
Sbjct: 11 SVNNTSTRKTGTELSTEDFLQIMAASIKM--PSMPGEGGSGGGGGETDYLAQLAQFNTLD 68
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDN 118
Q ++ TL + QA S + K + A G +SG V+ ++ G I VD
Sbjct: 69 QLTTVSETLNLNVLMTQQQQALSLLNKEVKVAGADSGFVSGTVDKVKFDQ-GYATIQVDG 127
Query: 119 TEIPITTGIRISN 131
+ + + + +
Sbjct: 128 KDYTLNDILEVGD 140
>gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1]
gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1]
Length = 246
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 46 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 105
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 106 GNLVGDDI 113
>gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
Length = 270
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLA 80
G + FL L + +I++QDPT+P ++ + QL+ +Q+ +M+ +T L+ + +
Sbjct: 63 GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVM 122
Query: 81 QASSYIGKNIT-------NADGSISGVVN 102
+ +G +I +D +I G V
Sbjct: 123 ALGNLVGDDIMVQTTTLQVSDSAIEGRVT 151
>gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1]
gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1]
Length = 225
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 84
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 85 GNLVGDDI 92
>gi|152990376|ref|YP_001356098.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2]
gi|151422237|dbj|BAF69741.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2]
Length = 220
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ K+ + + ++ FLK+L+ + QDP E ++ + ++E +++
Sbjct: 18 NVYDKNVDQSKMDKEGFLKVLLANFQFQDPFEAQDIAKFIDNTVKLRELEVLNNFETSVN 77
Query: 72 ELLK-SNNLAQASSYIGKNITNADGSI 97
L + L A++ IGK +
Sbjct: 78 TLANGTQQLLSAANLIGKKVVYTGNET 104
>gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
Length = 94
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
LG FLKLL+TQ+++Q+P +P +E +QLA +SQ+EQ + MN TL + + +
Sbjct: 25 KLGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTLTTMSDTMS 81
>gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431]
Length = 244
Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|27464951|gb|AAN63048.1| flagellar component FlgD [Vibrio vulnificus]
Length = 181
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 42 TEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI 90
+P+ + +AQ+A F+ ++ +MNS + L + SN QASS +G+++
Sbjct: 1 FKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDV 52
>gi|300854214|ref|YP_003779198.1| putative flagellar hook protein FlgD [Clostridium ljungdahlii DSM
13528]
gi|300434329|gb|ADK14096.1| predicted flagellar hook protein FlgD [Clostridium ljungdahlii DSM
13528]
Length = 239
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQ--DPTEPMKASEQVAQLAVFS 58
++ N+ + T K + ++ FLK+L ++ +Q ++ +++ ++QLA FS
Sbjct: 20 IDTNSSSDTTSNGTKIVKKNNDIDKNMFLKILSAELANQDPTSSDSQSSTQYISQLAQFS 79
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTA 113
+EQ +NS S + A+S + K +T +D ++SG V + +
Sbjct: 80 SLEQMANLNS-------STKMGTANSLMNKYVTFSDTDEQGNNVSGQVVGVIKDGDDIEL 132
Query: 114 ITVDNTE 120
+ E
Sbjct: 133 NVLMGQE 139
>gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
T + T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+
Sbjct: 16 TAESNTVAASDTTSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75
Query: 65 QMN---STLQELLKSNNLAQASSYIGKNI 90
+M+ +T L+ + + + +G +I
Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDI 104
>gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|323341380|ref|ZP_08081624.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644]
gi|323091257|gb|EFZ33885.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644]
Length = 157
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA-----SEQVAQLAVFSQME 61
+Q + + T+ D FLK++ T + + + + ++ ++Q+A FS ME
Sbjct: 26 AANSQTLKNIGNNNSTIKIDDFLKIISTAMSNPSLSGDSSSSGSSGTDYISQMAQFSTME 85
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDN 118
++N T+ + + QA S IGK + D +G V + G I+V+
Sbjct: 86 TLNELNKTVTTAMMISQQQQAFSLIGKTVDMVDEKNQPFTGKVERVSFK-NGFAQISVNG 144
Query: 119 TEIPITT 125
+++
Sbjct: 145 KYYDMSS 151
>gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605]
gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia coli
NC101]
gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1]
gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia coli
NC101]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia coli
O26:H11 str. 11368]
gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia coli
O111:H- str. 11128]
gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia coli
O26:H11 str. 11368]
gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia coli
O111:H- str. 11128]
gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14]
gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180]
Length = 237
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354]
Length = 234
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 34 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 93
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 94 GNLVGDDI 101
>gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026]
gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412]
gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli FVEC1302]
gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli UMN026]
gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412]
gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia
coli FVEC1302]
Length = 237
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280]
gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280]
Length = 237
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia coli
H736]
gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736]
gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736]
Length = 237
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
Length = 220
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82
+ F+ LLIT++++Q+P EP ++ V QL ++ EQ +N+ L L S N +
Sbjct: 29 NEFMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNS 88
Query: 83 SSYIGKNITNADGSIS 98
S+YIG+ +T + +
Sbjct: 89 SNYIGQTVTAKADTGT 104
>gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1]
Length = 237
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|225871933|ref|YP_002753387.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196]
gi|225793508|gb|ACO33598.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196]
Length = 210
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
S + + + FL LL+ ++K+QDPT ++ + QL + ++Q + +N L
Sbjct: 52 NSTATSGITSNDFLTLLVAEMKNQDPTSNTDPNQYIDQLVQVNSLQQLISINQEL 106
>gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357]
Length = 237
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W]
gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1]
gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W]
gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W]
gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11]
Length = 237
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9]
gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9]
gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9]
Length = 237
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
Length = 222
Score = 54.2 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + +
Sbjct: 32 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 91
Query: 84 SYIGKNITNADGSIS 98
+YIG + + +
Sbjct: 92 NYIGHTVEAKTDTAT 106
>gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella nitroferrum
2002]
gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella nitroferrum
2002]
Length = 226
Score = 53.8 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
+ +T + + + ++ G D F+ LL+ QIK+Q+P +P S+ V QL +QM
Sbjct: 8 LNDSTASSQGATPVASNGQSQSSGSDMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQM 67
Query: 61 EQSVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI 97
+ S+ M S L++ Q +G ++ ++
Sbjct: 68 QTSLGMLSQLKDNAVLLRELQGLGLGNQVGNSVLVQSNTV 107
>gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638]
gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638]
Length = 237
Score = 53.4 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++Q+PT+P A+E + QL+ +Q+ +M+ +T L+ + +
Sbjct: 37 DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 97 GNLVGDDI 104
>gi|319790417|ref|YP_004152050.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1]
gi|317114919|gb|ADU97409.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1]
Length = 218
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
+ ++ FLK+L+ ++ QDP + S+ + +ME +++ ++ L S
Sbjct: 25 NSKMSKEDFLKILLANLQWQDPLQAEDISQFIDDSVKLREMEALNDFENSVDKMVSTLNS 84
Query: 77 NNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTAITV 116
+L AS +IGK I G V+ S + V
Sbjct: 85 LSLFYASGFIGKLILYKGNQTYVENGKGYVSFTLPSDAASVTVEV 129
>gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim
5]
Length = 61
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS
Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61
>gi|328545576|ref|YP_004305685.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
gi|326415317|gb|ADZ72380.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
Length = 222
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQAS 83
FL L++TQ+++Q+P +P + ++ ++ + +++ L + S +
Sbjct: 31 DFLSLMLTQLQNQNPLDPTDTDTYLDRMVSYASYDTQTEISEQLSSIASSVSQMISGSGL 90
Query: 84 SYIGKNITNADGSIS 98
Y+G+ + + +
Sbjct: 91 GYLGQTVEAYGNTTT 105
>gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
Length = 242
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ + ++ + FLKLL TQ+K+QDP P ++ Q+ + +EQ
Sbjct: 7 SQNTTSVLDRINNGRTSMASNTETFLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66
Query: 64 VQMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITVD 117
+ N L L+ N L + S IGK +T S + G + G T++TV+
Sbjct: 67 LVTNDLLAALVGMNTGTGLTEGVSMIGKQVTATTDSSTLKGGKAAFSWTQAGGSTSLTVE 126
>gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 218
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA---QLAVFSQM 60
++ + + + + Q+ FLK+L+ +K QDP S+ + +L +
Sbjct: 11 DSATSNKPKVVDANYDNSKMSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESL 70
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
+ ++ TL +N++ ASS IGK +
Sbjct: 71 DSIQKLVDTLSTF--TNSIVNASSMIGKKVKYEGNQT 105
>gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 90
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 6 EVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
N T ++ +++ T+G + F+ LL+ Q+++QDPT PM ++ V Q + M
Sbjct: 9 SANSTPSLYATQPTRQPVQTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRS 68
Query: 63 SVQM 66
+
Sbjct: 69 MQDI 72
>gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus CB15]
gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus
NA1000]
gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15]
gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter
crescentus CB15]
gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus
NA1000]
Length = 227
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
+ S++ ++ FL+LL TQ+K+QDP P ++ Q+ + +EQ + N L L+
Sbjct: 18 NNSRTSLATNKETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQLVTNDLLAALV 77
Query: 75 KSNN---LAQASSYIGKNITNADGSIS 98
N L++ + IGK + + +
Sbjct: 78 GMNTGTGLSEGVAMIGKQVAAISDTST 104
>gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 219
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
Q + + Q+ FLK+L+ I+ QDP SE + ++E S +Q
Sbjct: 19 QVVDANYDNSKMSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQ 78
Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97
L+S +L AS++IGK +
Sbjct: 79 TFVSTLQSQSLFFASNFIGKLVEYEGNQT 107
>gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis EO147]
gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia
oklahomensis C6786]
Length = 223
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
N T + + D F KLL QI++Q+P EPM +S+ V QL + Q + +
Sbjct: 20 NKTPAPNANPEGSPA---DLFAKLLDAQIRNQNPLEPMDSSQFVTQLMMMQQTQAMETV- 75
Query: 68 STLQELLKSNNLAQASSYI 86
+L + NLA SS +
Sbjct: 76 ----AVLTNQNLATTSSML 90
>gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
Length = 94
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + + S T+ D F+ LL+ ++++QDPT P ++ + QL + ++Q + +N+
Sbjct: 21 TSTNPTTATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQLIGINTG 80
Query: 70 LQELLKSNNL 79
+ EL S ++
Sbjct: 81 IGELTSSLDI 90
>gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
Length = 215
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMNSTLQELLKS 76
+ + FLK+L+ ++ QDP + ++ + +ME + L+E ++
Sbjct: 23 NSKMENEDFLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVELLKETNEA 82
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
N+L AS IGK + G ++ + ++ DN +I T
Sbjct: 83 NSLLYASGLIGKKVVY-----EGNQTFVENGRSSVSFRLDDNADIVTVTV 127
>gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
29220]
Length = 295
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
D FL L + +I++QDPT+P + + QL+ +Q+ +M+ +T L+ + +
Sbjct: 70 DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 129
Query: 83 SSYIGKNI 90
+ +G +I
Sbjct: 130 GNMVGDDI 137
>gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
Length = 162
Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
T + + FL LL+ ++++QDPT PM ++ V Q+ +Q++Q + +N T
Sbjct: 36 TTSSTTSDGLTGSTAGTTFLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQT 95
Query: 70 LQELLKSNNLAQASS 84
L + + AS+
Sbjct: 96 LGGSSSTATASVASA 110
>gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei 668]
gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia
pseudomallei 305]
gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei DM98]
gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia
pseudomallei NCTC 13177]
gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e]
gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia
pseudomallei 305]
gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e]
Length = 241
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67
Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E +
Sbjct: 29 QHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88
Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L++S + S +G + S+ T I +DN E +T +
Sbjct: 89 QNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVTVVL 142
Query: 128 R 128
Sbjct: 143 T 143
>gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei]
Length = 231
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67
Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E +
Sbjct: 19 QHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 78
Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
L++S + S +G + S+ T I +DN E +T +
Sbjct: 79 QNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVTVVL 132
Query: 128 R 128
Sbjct: 133 T 133
>gi|225849152|ref|YP_002729316.1| flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644122|gb|ACN99172.1| putative flagellar hook capping protein FlgD [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 219
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQ---VAQLAVFSQM 60
+T + + + FLK+L+T ++ QDP S+ +L +
Sbjct: 11 DTVNTGKPKVVDANYDNSKISNSDFLKILLTDLQWQDPLNAKDISDFLDNTVKLRQMESL 70
Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
+ ++ L + +N++ ASS IGK +
Sbjct: 71 DSFQKLADALSKF--TNSILTASSLIGKKVKYEGNQT 105
>gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009]
gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD
[Rhodopseudomonas palustris CGA009]
gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
Length = 237
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93
K+Q+PT+P+ ++ QL F+ +EQ ++ N +L L++ QA S +G N
Sbjct: 50 KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVD 109
Query: 94 DGSI 97
+
Sbjct: 110 GSKV 113
>gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 43
Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
+FL LL+ Q+K+QDPT P++ +E QLA S + ++N+
Sbjct: 2 SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNT 43
>gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio
parahaemolyticus AQ3810]
Length = 59
Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYI 86
L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q LL + + + +
Sbjct: 1 LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNSMVLLDNMQVLSTAGLV 59
>gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia
thailandensis TXDOH]
Length = 241
Score = 51.1 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67
Q+ S S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E +
Sbjct: 29 QRVPSPSPNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88
Query: 68 STLQELLKSNNLAQASSYIGKNI 90
L++S + S +G +
Sbjct: 89 QNSAALMQSMFVVSLGSQVGAQV 111
>gi|146341768|ref|YP_001206816.1| putative basal-body rod modification protein flgD [Bradyrhizobium
sp. ORS278]
gi|146194574|emb|CAL78599.1| putative basal-body rod modification protein flgD [Bradyrhizobium
sp. ORS278]
Length = 218
Score = 50.3 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + +
Sbjct: 28 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 87
Query: 84 SYIGKNITNADGS 96
+YIG + +
Sbjct: 88 NYIGHTVEAKSDT 100
>gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia
thailandensis Bt4]
gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
Length = 241
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67
Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E +
Sbjct: 29 QRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 88
Query: 68 STLQELLKSNNLAQASSYIGKNI 90
L++S + S +G +
Sbjct: 89 QNSAALMESMLVVSLGSQVGTQV 111
>gi|148254599|ref|YP_001239184.1| putative basal-body rod modification protein flgD [Bradyrhizobium
sp. BTAi1]
gi|146406772|gb|ABQ35278.1| putative basal-body rod modification protein flgD [Bradyrhizobium
sp. BTAi1]
Length = 221
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + +
Sbjct: 31 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 90
Query: 84 SYIGKNITNADGS 96
+YIG + +
Sbjct: 91 NYIGHTVEAKTDT 103
>gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus
Koribacter versatilis Ellin345]
gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus
Koribacter versatilis Ellin345]
Length = 92
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ--DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
M I + S +G F +LL+ Q+K QDPT PM S+ V+QL +
Sbjct: 1 MNITGPAVGQATNAATSGPVSGMGDLDTTFAQLLVAQLKSQDPTSPMDPSQLVSQLVGLN 60
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSY 85
++ + L L + A+ Y
Sbjct: 61 TLDAVTSIYQLLAGLATIPTSSAANHY 87
>gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia
thailandensis E264]
gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia
thailandensis E264]
Length = 231
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMN 67
Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Q E +
Sbjct: 19 QRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVANLT 78
Query: 68 STLQELLKSNNLAQASSYIGKNI 90
L++S + S +G +
Sbjct: 79 QNSAALMESMLVVSLGSQVGTQV 101
>gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2]
gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2]
Length = 245
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
P +P+ ++ AQL F+Q+EQ ++ N L L+ QA S++G+ I+ +
Sbjct: 57 PLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTISVDGSTA 116
Query: 98 S 98
+
Sbjct: 117 A 117
>gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
Length = 221
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV---QMNSTLQELLKSNNLAQAS 83
FL LL+ ++++Q+P +P ++ +QL ++ EQ S+L S +S
Sbjct: 31 DFLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLNSS 90
Query: 84 SYIGKNITNADGSIS 98
+YIG+ +T S +
Sbjct: 91 NYIGQTVTAKADSAT 105
>gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68]
Length = 234
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
DAFL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + +
Sbjct: 37 DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96
Query: 86 IGKNI 90
+G +I
Sbjct: 97 VGDDI 101
>gi|316935454|ref|YP_004110436.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
gi|315603168|gb|ADU45703.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
Length = 239
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIG 87
K+Q+P +P+ ++ QL F+ +EQ ++ N +L L++ QA ++IG
Sbjct: 50 KNQNPMDPLDTNQFTQQLVQFAGIEQQLKSNESLSSLVELQTTAQATQALNFIG 103
>gi|15606897|ref|NP_214278.1| flagellar hook assembly protein [Aquifex aeolicus VF5]
gi|2984144|gb|AAC07679.1| flagellar hook assembly protein [Aquifex aeolicus VF5]
Length = 209
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
+S + + FLK+ + +++QDP S+ + + +Q++ +M L+ L +
Sbjct: 21 QSVDNMSANDFLKIYLETLRYQDPFNQTDISKSLDDMVKINQIKYFTEMKQFLESLKAWM 80
Query: 75 KSNNLAQASSYIGKN 89
++ IGK
Sbjct: 81 NQMTFLNTATLIGKE 95
>gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli]
gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042]
Length = 234
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
D FL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + +
Sbjct: 37 DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96
Query: 86 IGKNI 90
+G +I
Sbjct: 97 VGDDI 101
>gi|91978425|ref|YP_571084.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5]
gi|91684881|gb|ABE41183.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5]
Length = 242
Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
P +P+ ++ QL F+ +EQ ++ N +L LLK QA ++IG N
Sbjct: 53 PLDPLDTNQFTQQLVQFAGVEQQLKTNDSLSSLLKLQTTAQTTQAMNFIGANA------- 105
Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
VV+ + G TA +T+ P++ + I N
Sbjct: 106 --VVDGSKSHFDGKTAGWSLSTDKPVSAQVSIQN 137
>gi|260774937|ref|ZP_05883838.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609192|gb|EEX35350.1| flagellar basal-body rod modification protein FlgD [Vibrio
coralliilyticus ATCC BAA-450]
Length = 173
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSIS 98
+AQ+A F+ ++ +MN+ + L + SN QASS +G++ + DGS++
Sbjct: 1 MIAQMASFATVDGIGKMNNQFETLNASMTSNQALQASSLVGRDVLVPGAAGVKADDGSMA 60
Query: 99 GVVNAIQVSSTGLTAI 114
+V Q + +
Sbjct: 61 AMVKLPQSVDNLMVRV 76
>gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
Length = 233
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
P EP+ ++ QL F+ +EQ ++ N TL LLK QA ++IG
Sbjct: 51 PLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIG---------A 101
Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
+ VV+ + G TA +T+ P+T + +
Sbjct: 102 TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133
>gi|148253401|ref|YP_001237986.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
gi|146405574|gb|ABQ34080.1| putative flagellar basal-body rod modification protein FlgD
[Bradyrhizobium sp. BTAi1]
Length = 230
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA +++GK +
Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLGSLISMQQTTQATQALAFVGKTAVVNGSTT 114
>gi|333004884|gb|EGK24404.1| basal-body rod modification protein flgD [Shigella flexneri VA-6]
Length = 180
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 45 MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
M+ +E +QLA S + ++N+TL + + ++ QAS+ IG + ++
Sbjct: 1 MENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTV 56
>gi|163781857|ref|ZP_02176857.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159883077|gb|EDP76581.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 210
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-- 78
+ + F+K+ + +K QDP + S+ + + +Q++ M + + N
Sbjct: 25 DNMSANEFMKIYLETLKFQDPFKQQDLSKSLEDVVKLNQVKFYTDMKGFMDNFVAWMNQV 84
Query: 79 -LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
Q + IGK A ++ TV E I +G R+
Sbjct: 85 TFMQTINLIGKEFVFASDTLD----------------TVKGGEYYILSGERV 120
>gi|331666545|ref|ZP_08367419.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
gi|331065769|gb|EGI37653.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
Length = 195
Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNI 90
K+QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + + +G +I
Sbjct: 6 KNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDI 62
>gi|218461407|ref|ZP_03501498.1| flagellar basal body rod modification protein [Rhizobium etli Kim
5]
Length = 58
Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
+ADG++ G V +++V S G+ A T D +I + GI +++
Sbjct: 4 SADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 43
>gi|289548123|ref|YP_003473111.1| flagellar hook capping protein [Thermocrinis albus DSM 14484]
gi|289181740|gb|ADC88984.1| flagellar hook capping protein [Thermocrinis albus DSM 14484]
Length = 203
Score = 42.2 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM---EQSVQMNSTLQEL 73
++ L FLK+ + ++ QDP + S+ + + +Q+ L++L
Sbjct: 15 TQGVDNLSPQDFLKIYLETLRFQDPFQQQDLSKMLDDMVKLNQVKFFNDVRNTLENLKDL 74
Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
LA S + + + V++ + G T + + +I ++ +N
Sbjct: 75 TLQMTLAAGLSVLNREV---------YVSSEDIIPNGATYYLMSDRDIK-GAVVQFTN 122
>gi|75674799|ref|YP_317220.1| flagellar hook capping protein [Nitrobacter winogradskyi Nb-255]
gi|74419669|gb|ABA03868.1| Flagellar hook capping protein [Nitrobacter winogradskyi Nb-255]
Length = 230
Score = 41.5 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA ++GKN I
Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLSNLVSLQQTTQATQALDFVGKN-----AVI 109
Query: 98 SG 99
G
Sbjct: 110 DG 111
>gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD
[Gluconacetobacter diazotrophicus PAl 5]
gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 258
Score = 41.5 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93
++QDP+ PM + +LA F+ +EQ VQ N+ L L+ N L +S +GK T
Sbjct: 64 QNQDPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTATAD 123
Query: 94 DGSI 97
++
Sbjct: 124 STTL 127
>gi|77164896|ref|YP_343421.1| PAS sensor signal transduction histidine kinase [Nitrosococcus
oceani ATCC 19707]
gi|254434009|ref|ZP_05047517.1| PAS fold family [Nitrosococcus oceani AFC27]
gi|76883210|gb|ABA57891.1| PAS/PAC sensor hybrid histidine kinase [Nitrosococcus oceani ATCC
19707]
gi|207090342|gb|EDZ67613.1| PAS fold family [Nitrosococcus oceani AFC27]
Length = 938
Score = 40.7 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQV---------AQLAVFSQME-QSVQMNSTLQELL 74
+D FL L ++++ P PM+ + V AQ +E Q Q+ + +L+
Sbjct: 575 KDEFLATLTHELRN--PLAPMRNALYVIKSNSANAEAQTHAHELIERQISQIVRLIDDLM 632
Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
+ + + I K+I + +I+ V +Q+
Sbjct: 633 DVSRITRGKIRISKDIVDIQKAITDAVETVQL 664
>gi|209884349|ref|YP_002288206.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5]
gi|209872545|gb|ACI92341.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5]
Length = 239
Score = 40.7 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDA----FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
T Q + +KS + G FL LL TQ+++Q+P +P+ ++ QL F+Q+
Sbjct: 12 TSAGAAAQNNTSTKSSSSTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAQV 71
Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96
EQ ++ N L L+ QA ++G+ I+ +
Sbjct: 72 EQQLKANDQLSALVALQKTAQSTQALGFVGQTISVDGST 110
>gi|85713553|ref|ZP_01044543.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A]
gi|85699457|gb|EAQ37324.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A]
Length = 230
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
T + + + + TL + FL LL TQ+++Q+P +P+ ++ QL F+ +E
Sbjct: 16 TTALPASSPGSAATSDNNTLAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVE 75
Query: 62 QSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98
Q ++ N L L+ AQA+ ++GKN + +
Sbjct: 76 QQLRTNDQLSNLVSMQQTAQATQALDFVGKNAVVDGSTAT 115
>gi|115523065|ref|YP_779976.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
gi|115517012|gb|ABJ04996.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
Length = 243
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 4 NTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
N + S K+ FL LL TQ+++Q+P +P+ ++ QL F+ +EQ
Sbjct: 16 NPNYSANSSSSSSGKTSGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQ 75
Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98
++ NS L+ L+K QA +++G +
Sbjct: 76 QLKSNSQLEALVKLQTGAQATQALNFVGATAIVDGATTK 114
>gi|163749771|ref|ZP_02157017.1| putative transporter [Shewanella benthica KT99]
gi|161330584|gb|EDQ01542.1| putative transporter [Shewanella benthica KT99]
Length = 576
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ + QL+ FS +E + N L L L Q S IGK + +
Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVLKQESVLIGKTLKGSGFRA-------- 317
Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
+ + AI D EI G +
Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341
>gi|157376094|ref|YP_001474694.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3]
gi|157318468|gb|ABV37566.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3]
Length = 575
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ + QL+ FS +E + N L L + Q S IGK + A
Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVVKQESVLIGKTLKGAGFRA-------- 317
Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
+ + AI D E+ G +
Sbjct: 318 LFDAAVVAIRRDGEEVSGKLGEVV 341
>gi|260591545|ref|ZP_05857003.1| putative membrane protein [Prevotella veroralis F0319]
gi|260536576|gb|EEX19193.1| putative membrane protein [Prevotella veroralis F0319]
Length = 149
Score = 38.8 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
L+ A + IG+ D +G +++ A ++D EI + +RI
Sbjct: 84 QRLSNADALIGREGKVTDTIETGGYGRVKIDGDSWKAKSIDGQEISVGNDVRI 136
>gi|90422504|ref|YP_530874.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
gi|90104518|gb|ABD86555.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
Length = 237
Score = 38.4 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 9 PTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
P+ + K+ FL LL TQ+++Q+P +P+ ++ QL F+ +EQ ++ N
Sbjct: 20 PSDTSTTTGKTTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQQLKSN 79
Query: 68 STLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
S L+ L+K QA +++G DG + + + + + I
Sbjct: 80 SQLESLVKLQTGAQATQALNFVGATAVV-DGKTTELTKGVAAWGINVPKSSTVTVNITNA 138
Query: 125 TGIRI 129
TG +
Sbjct: 139 TGQTV 143
>gi|157376121|ref|YP_001474721.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3]
gi|157318495|gb|ABV37593.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3]
Length = 575
Score = 37.6 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 51 VAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSS 108
V QL+ FS +E + N L L + Q S IGK + A G V AI+
Sbjct: 271 VMQLSQFSGLEMFAEKNGLLDSNLTEVVVRQESILIGKTLKGAGFRALFDGAVVAIRRDG 330
Query: 109 TGLTAITVDNTEIPITTG 126
++ E+ + G
Sbjct: 331 EDISGKL---GEVVLKAG 345
>gi|206895859|ref|YP_002246689.1| basal-body rod modification protein FlgD [Coprothermobacter
proteolyticus DSM 5265]
gi|206738476|gb|ACI17554.1| basal-body rod modification protein FlgD [Coprothermobacter
proteolyticus DSM 5265]
Length = 97
Score = 37.2 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
+ +Q + L +D FLKLL+ ++K QDP PM + Q+ + + +++ +++
Sbjct: 6 TSSSQGATGSEQKVPGLNRDDFLKLLLAELKAQDPLSPMDTNTMTTQITLLNVLQELIEI 65
Query: 67 NSTLQELL--KSNNLAQASSYIGKNITNADGS 96
+ LQ L+ KS ++S+ G DGS
Sbjct: 66 KTMLQNLVSAKSQEGTESSTTDGAEEVAGDGS 97
>gi|92116311|ref|YP_576040.1| flagellar hook capping protein [Nitrobacter hamburgensis X14]
gi|91799205|gb|ABE61580.1| flagellar hook capping protein [Nitrobacter hamburgensis X14]
Length = 230
Score = 36.8 bits (84), Expect = 0.96, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS-------NNLAQASSYIGKNITNA 93
P +P+ ++ QL F+ +EQ ++ N L S QA ++GKN
Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQL----TSLVSLQQTAQATQALDFVGKNAVVD 110
Query: 94 DGSIS 98
+ +
Sbjct: 111 GSTAT 115
>gi|205373383|ref|ZP_03226187.1| hypothetical protein Bcoam_08725 [Bacillus coahuilensis m4-4]
Length = 114
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITN---ADGSISGVVN 102
+ + F+ + ++ + + EL N+L +AS+ IGK++T + +S +V+
Sbjct: 27 KFTGETVEFTLEDGTILLPENISELKSPQVGNSLVEASNLIGKSVTWLGENEEQLSSIVS 86
Query: 103 AIQVSSTGLTAITVDNTEIPITTGIRIS 130
++ + T D+ +I + + I
Sbjct: 87 SVSQKDGEIYIHTKDSQKIKASDLVTIE 114
>gi|42567541|ref|NP_195692.2| binding [Arabidopsis thaliana]
gi|53749172|gb|AAU90071.1| At4g39820 [Arabidopsis thaliana]
gi|332661723|gb|AEE87123.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 408
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85
L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++
Sbjct: 236 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 295
Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131
+G+N V+A++ + I V+N + + +S+
Sbjct: 296 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 346
>gi|27754425|gb|AAO22661.1| unknown protein [Arabidopsis thaliana]
Length = 412
Score = 36.1 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85
L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++
Sbjct: 240 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 299
Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131
+G+N V+A++ + I V+N + + +S+
Sbjct: 300 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 350
>gi|122011122|sp|Q3LX99|TXLR3_EISFO RecName: Full=Lysenin-related protein 3; Short=LRP-3; AltName:
Full=eflr3; Short=efL3
gi|75270469|gb|ABA18726.1| lysenin-related protein 3 [Eisenia fetida]
Length = 300
Score = 35.7 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+ +EQ + M ++ L A+ +G+ + D G V S + +++
Sbjct: 34 TSVEQKITMTKGMKNLNSETKTLTATHTVGRTLKVGDPFEIGSVEVSYSFSHQESQVSMT 93
Query: 118 NTEIPITTGIR 128
TE+ + I
Sbjct: 94 QTEVYSSQVIE 104
>gi|226939294|ref|YP_002794365.1| 16S rRNA-processing protein RimM [Laribacter hongkongensis HLHK9]
gi|226714218|gb|ACO73356.1| RimM [Laribacter hongkongensis HLHK9]
Length = 168
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
+ IG ++N G+ GVV+++ + + D + + ++
Sbjct: 102 ADLIGMAVSNPAGTAFGVVDSLMQTGANDVLVVRDGKQQTLIPFVK 147
>gi|3080451|emb|CAA18768.1| hypothetical protein [Arabidopsis thaliana]
gi|7270966|emb|CAB80645.1| hypothetical protein [Arabidopsis thaliana]
Length = 427
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 32 LITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLA---QASSY 85
L+ ++ ++DP +P+ S+ + F +E + ++++L KSN L Q ++
Sbjct: 255 LMKELINRDPLDPVLISKLGSVQMQFGDVEGAKTTFDRVEKMLNEGKSNGLLNEIQFNNL 314
Query: 86 IGKNITNADGSISGVVNAIQ-----VSSTGLTAITVDNTEIPITTGIRISN 131
+G+N V+A++ + I V+N + + +S+
Sbjct: 315 VGRNKALVYVVAKDYVSAVREYDKCIERDNSDIIAVNNKALCLMYLRDLSD 365
>gi|312374950|gb|EFR22408.1| hypothetical protein AND_15276 [Anopheles darlingi]
Length = 906
Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYI 86
+ + Q+ Q+ Q Q+N + +L + N L+Q S++
Sbjct: 657 QMINQMGQMGQLGQMNQLNQ-MNQLNQMNQLSQMQSHV 693
>gi|170039141|ref|XP_001847404.1| cytochrome P450 [Culex quinquefasciatus]
gi|167862754|gb|EDS26137.1| cytochrome P450 [Culex quinquefasciatus]
Length = 504
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKH-QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
+ + + K + ++ F+ LLI Q+K+ +DP + E AQ VF + S ++ +
Sbjct: 263 HDTVRQREKNNVQRNDFMNLLI-QLKNSEDPDARITMDEMAAQSFVF-FLAGSETSSTAM 320
Query: 71 QELLKSNNLAQ 81
+ + Q
Sbjct: 321 VNCMYELAMNQ 331
>gi|261885052|ref|ZP_06009091.1| flagellar basal body rod modification protein [Campylobacter
fetus subsp. venerealis str. Azul-94]
Length = 197
Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 45 MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGK 88
M +++ + Q + + +E N +++L ++S+ A S +GK
Sbjct: 1 MDSAKMLEQTSQLATLEMQENTNKVMKQLTTQMQSSLSMTAMSALGK 47
>gi|255027495|ref|ZP_05299481.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J2-003]
Length = 77
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAIT 115
Q+ L E +++ L A ++IGK+ ++ ISG V ++Q ++ G+
Sbjct: 2 QVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKL 61
Query: 116 VDNTE-IPITTGIRI 129
DN +P+T I
Sbjct: 62 KDNDSLVPMTYVTEI 76
>gi|255025862|ref|ZP_05297848.1| flagellar basal body rod modification protein [Listeria
monocytogenes FSL J2-003]
Length = 45
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDP 41
+ + S KTLG+D F+KL +T +++QDP
Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDP 44
>gi|239621213|ref|ZP_04664244.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515674|gb|EEQ55541.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 948
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89
++ +Q+A S + N+ + A S +GK
Sbjct: 415 DSTSMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
IT+ ++G + S + + DN +P+TT
Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507
>gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
Marseille]
gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
Marseille]
Length = 455
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ +QLA +M + L L+ K + + G++N++
Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVI----RMEGIINSMT 389
Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
+ + + I TG +
Sbjct: 390 PQERAKPELIKASRKRRIATGAGV 413
>gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog)
[Herminiimonas arsenicoxydans]
Length = 455
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ +QLA +M + L L+ K + + G++N++
Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 389
Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
+ + + I TG +
Sbjct: 390 PQERAKPDLIKASRKRRIATGAGV 413
>gi|119509074|ref|ZP_01628225.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
gi|119466240|gb|EAW47126.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
Length = 454
Score = 34.1 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
++ FL LL Q++ P+ + + Q+ S
Sbjct: 280 KNEFLNLLSHQLR-----SPLSNMKMMIQMLQLS 308
>gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas
arsenicoxydans]
Length = 396
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
++ +QLA +M + L L+ K + + G++N++
Sbjct: 275 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 330
Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
+ + + I TG +
Sbjct: 331 PQERAKPDLIKASRKRRIATGAGV 354
>gi|167530871|ref|XP_001748157.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773277|gb|EDQ86918.1| predicted protein [Monosiga brevicollis MX1]
Length = 1193
Score = 34.1 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
T + K+ +D FL + ++ QD P + +++ Q A F + + ++
Sbjct: 464 STGDATRWKQGKRDAEKDRFLGAMFFKLISQDVRCPTDSDKRIDQFADF--VTEMLKTAK 521
Query: 69 TLQELLKSNNLAQASSY 85
++ K+++ ASS+
Sbjct: 522 RNIDIAKAHSDRMASSF 538
>gi|317482507|ref|ZP_07941523.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA]
gi|316916059|gb|EFV37465.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA]
Length = 948
Score = 34.1 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89
++ +Q+A S + N+ + A S +GK
Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
IT+ ++G + S + + DN +P+TT
Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507
>gi|23465931|ref|NP_696534.1| hypothetical protein BL1369 [Bifidobacterium longum NCC2705]
gi|227547608|ref|ZP_03977657.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|312132536|ref|YP_003999875.1| salx-type abc antimicrobial peptide transport system atpase
component [Bifidobacterium longum subsp. longum BBMN68]
gi|322689455|ref|YP_004209189.1| hypothetical protein BLIF_1271 [Bifidobacterium longum subsp.
infantis 157F]
gi|23326641|gb|AAN25170.1| large protein with N-terminal similarity to ATP binding protein of
ABC transporter [Bifidobacterium longum NCC2705]
gi|227211863|gb|EEI79759.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|291516707|emb|CBK70323.1| ABC-type antimicrobial peptide transport system, ATPase component
[Bifidobacterium longum subsp. longum F8]
gi|311773470|gb|ADQ02958.1| SalX-type ABC antimicrobial peptide transport system ATPase
component [Bifidobacterium longum subsp. longum BBMN68]
gi|320460791|dbj|BAJ71411.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 948
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89
++ +Q+A S + N+ + A S +GK
Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
IT+ ++G + S + + DN +P+TT
Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507
>gi|315125523|ref|YP_004067526.1| two-component system [Pseudoalteromonas sp. SM9913]
gi|315014036|gb|ADT67374.1| probable two-component system [Pseudoalteromonas sp. SM9913]
Length = 392
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ------MNSTLQELLKSNNLAQA 82
K ++ Q+K+Q+ + S+ QL + Q+ +N + +L ++ A
Sbjct: 286 FKDIVAQLKNQNAMQTNAISQLTEQLEQLQSLMQTQNDLPASQLNEQITQLSHTSQQLVA 345
Query: 83 SS 84
++
Sbjct: 346 TT 347
>gi|322691423|ref|YP_004220993.1| hypothetical protein BLLJ_1234 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456279|dbj|BAJ66901.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 948
Score = 34.1 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%)
Query: 46 KASEQVAQLA----------------VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN 89
++ +Q+A S + N+ + A S +GK
Sbjct: 415 DSASMASQMASTSSSGMSGTSSITSQQMSMLTGKTDENAAPDSFNEIMPGADDSKLVGKV 474
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
IT+ ++G + S + + DN +P+TT
Sbjct: 475 ITDNYQVVNG---SWPKSKDEVVLVLDDNNSVPLTT 507
>gi|313837733|gb|EFS75447.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
gi|314927385|gb|EFS91216.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
gi|314972671|gb|EFT16768.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
gi|328907469|gb|EGG27235.1| putative lipoprotein [Propionibacterium sp. P08]
Length = 256
Score = 33.8 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
+ +PT + ++K+ K L QD F K + ++ + + S+ AQ+ +++
Sbjct: 45 SVTASPTPTKHKQTKAPKHLSQDDFTKAISSKKINNQTFTILDNSQIAAQMNQVTKVIGQ 104
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
+++ + ++A + DG I+ +V+AI + T +T++
Sbjct: 105 AKISPVECGKILKQSIA----------SVTDGEINNIVSAIGSDQSAPTTVTLN 148
>gi|296283783|ref|ZP_06861781.1| cation antiporter (Na+/Ca2+) [Citromicrobium bathyomarinum JL354]
Length = 344
Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
+M + L L +A IG + A SISG+V +I +++G + V N
Sbjct: 28 SKMAAIADVLADRTGLGEA--LIGAVLLGAGTSISGIVTSITTAASGAPELAVSN 80
>gi|195953026|ref|YP_002121316.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1]
gi|195932638|gb|ACG57338.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1]
Length = 240
Score = 33.8 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPM--KASEQVA---QLAVFSQMEQSVQMNSTL 70
+S L A++++ T++K+QDP + + QL + Q L
Sbjct: 35 TQQSLMNLSASAYMEIYTTELKYQDPASSSGNDVTSMINATVQLQQIGYYSIAQQQTQAL 94
Query: 71 QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
+ LL + + IGK S SG+ VS ++ N + I G
Sbjct: 95 EALLSQMTTLNSINMIGKEFVF---STSGIDTTKNVSYYLDAPTSMSNVSVEIMNG 147
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.147 0.398
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,080,411,072
Number of Sequences: 14124377
Number of extensions: 71654611
Number of successful extensions: 235564
Number of sequences better than 10.0: 1309
Number of HSP's better than 10.0 without gapping: 2247
Number of HSP's successfully gapped in prelim test: 206
Number of HSP's that attempted gapping in prelim test: 230815
Number of HSP's gapped (non-prelim): 3162
length of query: 131
length of database: 4,842,793,630
effective HSP length: 96
effective length of query: 35
effective length of database: 3,486,853,438
effective search space: 122039870330
effective search space used: 122039870330
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 76 (33.8 bits)