BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] (131 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis] gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis] Length = 228 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 75/109 (68%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 L + FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++ ++Q Sbjct: 27 NLNYNDFLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 AS YIGK I +ADG +G + + V + G+ A T +I I G+ I+ Sbjct: 87 ASDYIGKQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135 >gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus Liberibacter asiaticus str. psy62] Length = 131 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM Sbjct: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE Sbjct: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 Query: 121 IPITTGIRISN 131 IPITTGIRISN Sbjct: 121 IPITTGIRISN 131 >gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583] gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583] Length = 190 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ+ + +KK D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN L Sbjct: 19 QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78 Query: 71 QELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +++L + ++ A Y+GK I D I G V ++ + S G+ A + ++ I G+ Sbjct: 79 EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVATLDNGEKVLIGPGV 138 Query: 128 RI 129 + Sbjct: 139 TV 140 >gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4] gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4] Length = 136 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 8/136 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+++T + PT + S ++ +D FLK+L+ Q+ H DP P K +++++ Sbjct: 1 MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTA 113 + +EQ +++ S+L + L Q +S +GK +T +++G V +++ G Sbjct: 61 NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRL-EDGKIR 119 Query: 114 ITVDNTEIPITTGIRI 129 + +D E P+ + Sbjct: 120 LVIDGREYPLAAVKEV 135 >gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC BAA-1498] Length = 169 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL Sbjct: 18 GQPEMAGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLS 77 Query: 72 ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 ++L + + A Y+GK I D I G V +I + S G+ A + ++ I G++ Sbjct: 78 QMLSNGLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVK 137 Query: 129 I 129 + Sbjct: 138 V 138 >gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C] Length = 170 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + +KK D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL Sbjct: 19 GKPEMAGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLS 78 Query: 72 ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 ++L + + A Y+GK I D I G V +I + S G+ A + ++ I G++ Sbjct: 79 QMLSNGLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVK 138 Query: 129 I 129 + Sbjct: 139 V 139 >gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73] gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae 73] Length = 169 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + +KK D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN Sbjct: 14 QNIDGQPEMAGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMN 73 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124 TL ++L + ++ A Y+GK I D I G V +I + S G+ A + ++ I Sbjct: 74 ETLTQMLSNGSINGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVATLDNGEKVVIG 133 Query: 125 TGIRI 129 G+++ Sbjct: 134 PGVKV 138 >gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea phototrophica DFL-43] Length = 133 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 91/132 (68%), Gaps = 3/132 (2%) Query: 1 MEINTEVNPTQQEFS---KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ ++ + S + +K TL D FL LL+ Q+K+QDPT+PM ++EQ+AQLA F Sbjct: 1 MDISPLAAASRSQGSAADTAANKATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 SQ+EQ++Q N L+ELL+S++L+QA S IG+ IT+ D ++SG + +QV S GL A+ D Sbjct: 61 SQVEQTIQTNKHLEELLQSSSLSQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLED 120 Query: 118 NTEIPITTGIRI 129 T++ + G+ I Sbjct: 121 GTKVVVGPGVSI 132 >gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus str. 2308 A] gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026] Length = 151 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 41 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151 >gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3] Length = 169 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + ++ +KK D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ++ Sbjct: 11 SYSQDSGEQTEMVGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAI 70 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121 +MN TL ++L + ++ A Y+GK I D I G V +I + S G+ A + ++ Sbjct: 71 KMNETLAQMLSNGSINGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVATLDNGEKV 130 Query: 122 PITTGIRI 129 I G+++ Sbjct: 131 VIGPGVKV 138 >gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168] gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168] Length = 142 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 ++ + L +DAF KLLITQ++HQDP +PM+ E +AQ+A FS +EQ Sbjct: 14 TSQSNEKVTMERNDGNNLDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMAN 73 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEI 121 MN L ++ +L+Q ++ IG+N+ D +SG V + S L A ++ +I Sbjct: 74 MNENLSTFMRMESLSQGAALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKI 133 Query: 122 PITTGIRIS 130 P+ T IS Sbjct: 134 PVDTITSIS 142 >gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp. BNC1] gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1] Length = 129 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 55/130 (42%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++T + T Q + + +T+ +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+ Sbjct: 1 MNVSTVTS-TPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQMNS L+++L ++ L+QA IG+ IT+ADGS++G+V +++ S G+ A E Sbjct: 60 EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119 Query: 121 IPITTGIRIS 130 + + G+ IS Sbjct: 120 VVVGPGVVIS 129 >gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp. H13-3] Length = 156 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 80/123 (65%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 S KS +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ Sbjct: 15 ANAGASSNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNT 74 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 L+ +L++ L +AS +GK + +AD ++GVV ++V S G+ AIT ++ + G+ Sbjct: 75 HLKSMLQAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVT 134 Query: 129 ISN 131 SN Sbjct: 135 FSN 137 >gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium medicae WSM419] gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419] Length = 138 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 85/130 (65%), Gaps = 2/130 (1%) Query: 2 EINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + P + E + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ Sbjct: 8 NTSNSYTPIVSGTESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +EQ+++ N L+ LL+ +L++A + IG+ +T+ADG +GVV +++ S G+ A+ Sbjct: 68 VEQTIKTNKNLESLLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127 Query: 120 EIPITTGIRI 129 E+ I G+++ Sbjct: 128 ELVIGPGVKV 137 >gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242] Length = 136 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 79/125 (63%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N T+ + + +AFL+LL+T+++HQDP +PM ++ V QLA F+ +EQ++Q Sbjct: 12 TSNSTRAASVANAAADAGNYNAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQ 71 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 NS L L +++ L+QASS IG+ +++ADG SGVV ++ + G+ A+ D ++ + Sbjct: 72 TNSLLASLNENSALSQASSLIGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGP 131 Query: 126 GIRIS 130 G+ IS Sbjct: 132 GVTIS 136 >gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41] gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ +K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M Sbjct: 20 SNYKKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTK 79 Query: 69 TLQELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLT 112 ++ LL S Q +Y +GK + + SGV+ +++ + Sbjct: 80 AVESLLASQQQTQMMNYATFVGKEVKWHEISDKTDEKGEPIVNEGSGVIESLKFVDGSVV 139 Query: 113 AITVDNTEIPITTGIRI 129 D EI I Sbjct: 140 FKLADGKEITPGNISGI 156 >gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti MAFF303099] gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium loti MAFF303099] Length = 135 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 55/129 (42%), Positives = 93/129 (72%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + +KS SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPVGANSTTKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G+V ++ ++S+GL A+ D T+ Sbjct: 63 EQSVQSNTKLDQIMQSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTK 122 Query: 121 IPITTGIRI 129 +P+ G+ I Sbjct: 123 VPVGPGVSI 131 >gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae 91E135] gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae 91E135] Length = 144 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + Sbjct: 20 SNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79 Query: 70 LQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + L + + +GK + I G V I+ + + I +D Sbjct: 80 FESLSSVLGINKDLDLLGKIVEFEHVDGEIIKGKVTNIK--TGIVPQIMIDGKYYVYNNI 137 Query: 127 IRIS 130 + + Sbjct: 138 LSVG 141 >gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 125 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 94/125 (75%), Positives = 106/125 (84%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 +N TQ+E SK +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM Sbjct: 1 MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60 Query: 67 NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG Sbjct: 61 NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120 Query: 127 IRISN 131 IR+S+ Sbjct: 121 IRVSS 125 >gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium radiotolerans JCM 2831] gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 139 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 48/108 (44%), Positives = 75/108 (69%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L LL S+ L+QA Sbjct: 32 LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +G +T+AD +++G V +++V+S GL A + ++ G+ + Sbjct: 92 GGLVGHTVTSADKTLTGTVVSVEVASNGLLAHLDNGKDVRYEPGMTVY 139 >gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans Z-2901] Length = 135 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 6/130 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++++++ + S++K L +DAFLK+ + Q+++QDP P +E +A+LA F +EQ Sbjct: 8 VSSQMSTSANAASQTKLN--LDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQ 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNT 119 + L +LL+ AQA++ IGK + T A+ + GVV+A++ S ++ V+ Sbjct: 66 LTNLTDALTKLLQFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWSGD-QISLVVNGQ 124 Query: 120 EIPITTGIRI 129 E I + Sbjct: 125 EYSPDKVIEV 134 >gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 263 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ T S + +L ++ FL LL+TQ+K+QDP P ++E V+QLA FS +EQ Sbjct: 6 VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119 MN++L+ L L YI ++T + G ++ G V+++ + S G A+ V Sbjct: 66 MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTM-SNGEAALVVGGK 121 Query: 120 EIPITTGIRISN 131 I ++ + + Sbjct: 122 SIELSDVCAVYD 133 >gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator MP104C] Length = 134 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + +E + S QD FLKLL+ Q+K+ P P + + Q A F +E+ Sbjct: 6 VGSEYALPGKTTPPRPSSGLFDQDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLER 65 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTE 120 V++ L+E+ ++ LAQA+ +G+ + D ISG V + ++ G + + Sbjct: 66 LVKVEEALREMSRAAYLAQAAEIVGREVVVLAGDRQISGTVERVLLNERGA-RVVLGAES 124 Query: 121 IPITTGIRI 129 I + + Sbjct: 125 YDINRVVEV 133 >gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis MB4] Length = 131 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 1 MEINTEVNP-TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M +NT + +K +K LG+D FL LL+TQ+K+QDP P+ E +AQLA FS Sbjct: 1 MNVNTNYSVLPPSNQNKVTTKSKLGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQFSA 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGS-----ISGVVNAIQVSSTGLT 112 +EQ +N + + + IGKN+ T DG+ + G V+A+ G Sbjct: 61 LEQMQNLNESFNSVKA-------IALIGKNVYATINDGNGNYKEVFGKVDAV-YRENGQY 112 Query: 113 AITVDNTEIPITTGIRISN 131 + V +IP+ ++ Sbjct: 113 FLKVKGLDIPLDAVRAVTE 131 >gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM 20745] Length = 150 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 3 INTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + NP S + LG+ FL LL Q+++QDP PM+ +E +AQLA + + Sbjct: 6 VTNQTNPGTDAASSTTFSPADRLGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSL 65 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116 EQ QMN TL L++ + LAQ +S IG+++T D G I GVV+ + + G + V Sbjct: 66 EQMQQMNETLSTLVEMSVLAQTASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNV 124 Query: 117 DNTEIPITTGIRIS 130 T +P+ + I Sbjct: 125 GGTAVPLAHVVSIG 138 >gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI] Length = 132 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Query: 1 MEINTEVNPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M++N+ + + S+ K L ++AFL+L + Q+K+QDP P ++ + QL+ FS Sbjct: 1 MQVNSVTSEYYRPPDNSREPLKALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSM 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVD 117 +EQ +N + + L +A++ +G+ + DG +SG V + V G + V+ Sbjct: 61 LEQLASLNEEVTLARRFQELGEAAALLGRQVKVQTGDGDVSGQVEKVAVVE-GEVRLFVN 119 Query: 118 NTEIPITTGIRI 129 T + + Sbjct: 120 GTGYGLDKVTEV 131 >gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium meliloti 1021] gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti] gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium meliloti 1021] gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83] gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C] Length = 138 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 82/128 (64%), Gaps = 2/128 (1%) Query: 2 EINTEVNPT--QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + PT + + S TL ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ Sbjct: 8 NTSNSYTPTVSATDSAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +EQ+++ N L+ LL+ L++A + IG+ +T+ADG +GVV +++ S G+ A+ Sbjct: 68 VEQTIKTNKNLESLLQRTALSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127 Query: 120 EIPITTGI 127 E+ I G+ Sbjct: 128 ELVIGPGV 135 >gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM 574] Length = 138 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 1 MEINTEVNPT--QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M +N+ N S K KTL +DAFL++++ Q+K+QDPT PM + + Q+A F+ Sbjct: 1 MAVNSVNNDLFYDNNKSPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFT 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116 +EQ +NS ++L L SS IG +T N D +ISG V + + +TG I V Sbjct: 61 TLEQITNLNSNFEKLYSLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATG-VKIWV 119 Query: 117 DNTEIPITTGIRI 129 + ++ + Sbjct: 120 ADKPYDLSQITSV 132 >gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi HTCC2506] Length = 136 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 69/128 (53%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + Q + DAFL+LL+ Q+K+QDP P +++E +AQ A F+ +EQ Sbjct: 9 VTQAQGAAAQNGITKGGAPEMDYDAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQ 68 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 S+Q N+ L+ ++ + L QA + IG+ +T+ DG+ G V +I+ G+ A I Sbjct: 69 SIQTNTRLESMMTVSALTQADALIGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIM 128 Query: 123 ITTGIRIS 130 + G+ ++ Sbjct: 129 LGDGVSVA 136 >gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10] Length = 161 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 14/130 (10%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 +K +G+DAFLKLLITQ+++QDP +PM+ E ++Q+A FS +EQ MN + + L Sbjct: 23 AKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMNENMNKFL 82 Query: 75 KSNNLAQ---ASSYIGKNITNAD-----------GSISGVVNAIQVSSTGLTAITVDNTE 120 +S +Q S IGK I + ++S +V A++ T +T E Sbjct: 83 ESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATILTESGKE 142 Query: 121 IPITTGIRIS 130 + + +I+ Sbjct: 143 LSVDDIQKIA 152 >gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1] Length = 185 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%) Query: 1 MEINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ME+N N + +S KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F+ Sbjct: 1 MEVNQTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMFT 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITV 116 +EQ +N+ ++ L L ASS IGK + + + G V + + I V Sbjct: 61 TLEQMTNLNTNMERLYHLQELNHASSLIGKRVNLIAEEEQVIGEVERVTLGEN-SVNIWV 119 Query: 117 DNTEIPITTGIRI 129 + I + Sbjct: 120 AGHPYSLDQVISV 132 >gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 197 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + ++ + +S +LG+D FLK+LI Q+ +Q+P +PM E +AQ+A F+ +EQ Sbjct: 23 SVNQKSETKTMRSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMT 82 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVD 117 M + +L +S L AS+ IGK+++ + GVV+AI + G+ + + Sbjct: 83 FMAEQMYDLRQS--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIG 139 Query: 118 NTEIPITTGIRISN 131 EIPI R+ + Sbjct: 140 KEEIPIDLITRVGD 153 >gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum intermedium LMG 3301] Length = 136 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 54/114 (47%), Positives = 84/114 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + Sbjct: 23 AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +L QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 83 TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 135 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 91/129 (70%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG +G V +++++S GL A+ + TE Sbjct: 63 EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122 Query: 121 IPITTGIRI 129 + + G+ + Sbjct: 123 VAVGPGVSV 131 >gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1] Length = 160 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 3/115 (2%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 ++KK D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N L ++L + Sbjct: 26 EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ A Y+GK I D I G V +I + + G+ A +N ++ I GI + Sbjct: 86 SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140 >gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum anthropi ATCC 49188] gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188] Length = 136 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 54/111 (48%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L Sbjct: 26 KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S G+ A D + I G++IS Sbjct: 86 TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136 >gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20] gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC 27405] gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20] Length = 323 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 16/130 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N + Sbjct: 18 STTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77 Query: 70 LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121 + +A IGK IT G + G+V ++++ G + V+ ++ Sbjct: 78 F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129 Query: 122 PITTGIRISN 131 P+ + +S Sbjct: 130 PVDNVLSVSE 139 >gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360] gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313] Length = 323 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 16/130 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S ++ LG+D FL LLITQ+++QDP P+ E ++Q+A FS +EQ +N + Sbjct: 18 NTTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77 Query: 70 LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121 + +A IGK IT G + G+V ++++ G + V+ ++ Sbjct: 78 F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129 Query: 122 PITTGIRISN 131 P+ + +S Sbjct: 130 PVDNVLSVSE 139 >gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061] Length = 148 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 10/138 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ Sbjct: 8 NRTVAQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67 Query: 64 VQMNSTLQELLKSNNL--------AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113 MN ++ +L + + +IGK ++ D ISG V +++ + Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127 Query: 114 ITVDNTEIPITTGIRISN 131 D T+I + Sbjct: 128 YLEDGTKISPWDVTAVGE 145 >gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9] Length = 131 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 8/135 (5%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S+ SKK LG+D FLKLL+ Q+K+Q+P PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITV 116 +EQ +N++ + N L + I +T+ +G + G V+A+ + V Sbjct: 61 LEQMQNLNTSFSAVRAINLLGKN---IYATVTDNNGESKAVEGKVDAV-YKQNEEYFLEV 116 Query: 117 DNTEIPITTGIRISN 131 + ++P+ +S Sbjct: 117 NGIDVPLDAVTAVSE 131 >gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 5/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + +++ +G+D FL+L +TQ+K+Q+P EPM E +AQ A F+ MEQ Sbjct: 8 SASNANVEGTGKQTEDSNKMGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQM 67 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNT 119 MN L++ L L Q SS IGK + +++ I+G V ++++ +G + ++ Sbjct: 68 KNMNQNLEKFLGMQKLTQVSSLIGKEVKALDSDSGEEITGEVEKVKMADSG-PKLIINGN 126 Query: 120 EIPITTGIRI 129 E + + I Sbjct: 127 EYEMGSVNEI 136 >gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2] gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2] Length = 137 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 56/127 (44%), Positives = 87/127 (68%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 T T + + +K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQS Sbjct: 11 TTNSASTAGNSTSAANKASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQS 70 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 VQMNS L+ L+ + +L QA +IG+ +T+ADGSI+GVV ++ + S+G+ A D + I Sbjct: 71 VQMNSKLETLIANTSLTQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTI 130 Query: 124 TTGIRIS 130 G+RIS Sbjct: 131 GEGVRIS 137 >gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum WSM2075] Length = 135 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 54/129 (41%), Positives = 90/129 (69%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ T + + S SK + +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+ Sbjct: 3 VDMTTTIPVGSNSTTTSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQSVQ N+ L+++++S+ L+QA + IG+ IT+ADG +G V ++ ++S GL A+ D T+ Sbjct: 63 EQSVQTNTKLEQIMQSSALSQADAIIGRTITSADGKTTGTVASVTLASNGLIAVLQDGTQ 122 Query: 121 IPITTGIRI 129 +P+ G+ I Sbjct: 123 VPVGAGVSI 131 >gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. 16M] gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330] gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis biovar Abortus 2308] gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC 25840] gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC 23365] gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC 23445] gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus S19] gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis ATCC 23457] gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv. 6 str. 870] gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv. 3 str. Tulya] gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5 str. 513] gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3 str. 686] gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella pinnipedialis M163/99/10] gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella pinnipedialis B2/94] gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti M644/93/1] gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti M13/05/1] gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv. 4 str. 292] gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella pinnipedialis M292/94/1] gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis bv. 1 str. Rev.1] gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae 5K33] gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis bv. 3 str. Ether] gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti M490/95/1] gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94] gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv. 9 str. C68] gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99] gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94] gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99] gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1 str. 16M] gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis 1330] gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella abortus bv. 1 str. 9-941] gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping protein [Brucella melitensis biovar Abortus 2308] gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis ATCC 25840] gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365] gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19] gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str. Cudo] gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457] gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM 4915] gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038] gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M] gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40] gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292] gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str. 86/8/59] gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870] gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68] gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya] gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94] gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1] gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1] gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94] gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33] gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10] gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99] gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513] gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686] gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1] gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str. Ether] gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. Rev.1] gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str. 63/9] gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1] gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196] gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis M28] gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis M5-90] Length = 137 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 56/111 (50%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +TNADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp. B14905] Length = 229 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ +K LG+DAFL+LLITQ++HQDPT PM E ++Q+A FS +EQ M Sbjct: 21 SNYRKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTK 80 Query: 69 TLQELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLT 112 ++ LL S Q +Y +GK + + SGV+ +++ + Sbjct: 81 AVESLLASQQQTQMMNYATFVGKEVKWHEITDKTDEKGDPVVNEGSGVIESLKFVDGSVV 140 Query: 113 AITVDNTEIPITTGIRI 129 D EI I Sbjct: 141 FKLADGKEITPGNISGI 157 >gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus CCSD1] Length = 131 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 8/133 (6%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116 +EQ MNS++ + N + + I IT+ +G ++ G V+ + G + V Sbjct: 61 LEQMQNMNSSINAIRAINLIGKN---IYATITDNNGNSRTVIGKVDVV-YKQNGEYFLEV 116 Query: 117 DNTEIPITTGIRI 129 + +IP+ + Sbjct: 117 NGIDIPLDAVTAV 129 >gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13] gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13] gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1] gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF 2653] Length = 137 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 55/111 (49%), Positives = 82/111 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K ++ D+FLKLL+TQ+++QDPT+PM ++ V+QLA FS +EQSVQMNS L+ L+ + +L Sbjct: 27 KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA +IG+ +T+ADGSISGVV ++ + S+G+ A D + I G+RIS Sbjct: 87 TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137 >gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578] Length = 145 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA S +GK + D ISGVV ++ + V+ + + Sbjct: 93 SQAFSLLGKTVVIKNGDEEISGVVEEVRGRE--FPQLLVNGRYFDMNQIESV 142 >gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum subsp. pallidum SS14] gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum] gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum subsp. pallidum SS14] gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 153 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M++ V Q E +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS + Sbjct: 21 MDV--RVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDN 118 EQ M++ +++L +A +GK +T AD ++ G+++A+ + + V + Sbjct: 79 EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAVTRAD--KPQVRVGS 136 Query: 119 TEIPITTGIRISN 131 I++ Sbjct: 137 HWYEWEHVKVIAD 149 >gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium tumefaciens str. C58] gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58] Length = 157 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 80/123 (65%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 S K+ +L D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+ Sbjct: 15 ANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNT 74 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 L+ +L++ L +AS +GK + +AD ++GVV +QV S G+ A+T ++ + G+ Sbjct: 75 HLKSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVV 134 Query: 129 ISN 131 SN Sbjct: 135 FSN 137 >gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1] Length = 140 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + ++S + L++ Sbjct: 19 RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQ 78 Query: 76 SNN---LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + N L + S +IGKN+ + + SGVV ++ + + + I + I++ Sbjct: 79 TQNNQALLRYSEWIGKNVYWQEEENTKSGVVKSVLQKDNQIFLELDNGSTINASLVIKV 137 >gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM 6725] Length = 164 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118 +N + + L S IG+ + + +I G +++I+V + V+ Sbjct: 69 QNLNESFEFLKAQ-------SMIGRYVVATNPADTSKTIEGRIDSIRV-DGSKVYLKVNG 120 Query: 119 TEIPITTGIRIS 130 TE+ + Sbjct: 121 TEVLFDNVKEVY 132 >gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 131 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 16/139 (11%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP +PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112 +EQ MNS+ N +A + IGKNI +++G V+ + G Sbjct: 61 LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVDVV-YKQNGEY 112 Query: 113 AITVDNTEIPITTGIRISN 131 + V+ ++P+ +S Sbjct: 113 FLQVNGIDVPVDAVTAVSE 131 >gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName: Full=ORF 8 gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis str. 168] gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis BSn5] Length = 140 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117 + +N+T+ + +++ + ++GK ++ DG +G V++++ + D Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123 Query: 118 NTEIPITTGIRIS 130 TEI + + Sbjct: 124 GTEISPANVMSVG 136 >gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1] Length = 230 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 16/137 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ +K LG+DAFLKLLITQ++HQDPT PM E ++Q+A FS +EQ M Sbjct: 20 SNYKKPTKQTGNSELGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTK 79 Query: 69 TLQ---ELLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTGLT 112 ++ + + + +++IGK + + GV+ +++ + Sbjct: 80 AMESLLSSQQQSQMMNYATFIGKEVKWHEITEEKDEKENPVVNEGIGVIESLKFVDGSVV 139 Query: 113 AITVDNTEIPITTGIRI 129 D EI I Sbjct: 140 FKLADGKEISPGNISGI 156 >gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 140 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + + S +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTSTVTTSNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117 + MN T+ + +++ + ++GK ++ DG +G V++++ S I D Sbjct: 64 MMNMNKTMTQFVENQDPFTSYVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDD 123 Query: 118 NTEIPITTGIRIS 130 TEI + ++ Sbjct: 124 GTEINPWNVMSVA 136 >gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii DAH] gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH] Length = 144 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + + LG+D FLKLLITQ+K+QDPT+PMK E +AQ+A FS +EQ M+ + Sbjct: 20 SNSKVQRGVKGSNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79 Query: 70 LQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + L + + +GK + I G V I+ + + I +D Sbjct: 80 FESLSSALGANKDLDLLGKIVEFEHTDGEIIKGKVTNIK--TGVVPQIMIDGKYYVYNNI 137 Query: 127 IRIS 130 + + Sbjct: 138 LSVG 141 >gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis subsp. natto BEST195] Length = 140 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++E ++ + S + +LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ Sbjct: 4 ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63 Query: 63 SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117 + +N+T+ + +++ + ++GK ++ DG +G V++++ + D Sbjct: 64 MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123 Query: 118 NTEIPITTGIRIS 130 TEI + + Sbjct: 124 GTEISPANVMSVG 136 >gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130] gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130] Length = 131 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 80/130 (61%), Gaps = 2/130 (1%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + + T +++ K + D+FLKLL+ ++++QDPT+PM++SE VAQLA FS + Sbjct: 4 IDAISATSTTSTGTAQAAQKAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGV 63 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 EQS+Q N+ L LL N L QA + IG+ +T G ++G+V+++ + S + + D Sbjct: 64 EQSIQTNTKLDALLAGNVLGQAGTMIGRTVTA--GDVTGLVDSVAIESGSASLVLDDGRR 121 Query: 121 IPITTGIRIS 130 + ++ +S Sbjct: 122 VALSAVSGVS 131 >gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580] Length = 159 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+ + Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTSL 86 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDN 118 EQ MN + L + + A + +GK + G++SG + A + V+ Sbjct: 87 EQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITAATRGEN--PQVQVNG 144 Query: 119 TEIPITTGIRIS 130 + + Sbjct: 145 KWYAWSDVQTVY 156 >gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus 1942] Length = 142 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 5/113 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81 LG+D FLK+L+ Q+++QDP P+ E ++Q+A FS +EQ + +N+T+ + + + Sbjct: 26 LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85 Query: 82 ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++IGK+++ ++G +G V++++ S + D EI + Sbjct: 86 YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEISPWNVTSVG 138 >gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 134 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 2 EINTEVNPTQQEFSKSKS-KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 E+N +++ KK LG+D FLK+LI Q+ HQDP +P+K + +AQ+A FS + Sbjct: 3 EVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSAL 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117 EQ + + ++ L ++A A +Y+G+ + D +GVV +++ +T D Sbjct: 63 EQQMNIAKGIEGL-SKLSMASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLAD 121 Query: 118 NTEIPITTGIRIS 130 IP+ + Sbjct: 122 GNSIPMEKVQYVG 134 >gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus licheniformis ATCC 14580] gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2] gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580] gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580] gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2] Length = 155 Score = 99.7 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ K+ S LG+D FLKLL+ Q+++QDP PM+ E +AQ+A FS +EQ +N+ Sbjct: 26 SEAKKAEKAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNT 85 Query: 69 TLQELLKSNN-LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 T+ + + + S+IGK +T + +V +++ S + D TE+ Sbjct: 86 TMSTFVGLQDPMTMYVSWIGKEVTYEGEDSEEKTALVKSVKSSDGQYLLVLDDGTEVNPW 145 Query: 125 TGIRIS 130 +S Sbjct: 146 NVTAVS 151 >gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192] Length = 145 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K+ LG+D FLKLL+ Q+ HQDPT+P++ E +AQ+A FS +EQ M+ +L Sbjct: 33 KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92 Query: 80 AQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +QA S +GK + +G ISGVV ++ + + V+ + + Sbjct: 93 SQAFSLLGKTVVIKNGGQEISGVVEEVRGTE--FPQLLVNGRYFDMNQIESV 142 >gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1] gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1] Length = 146 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ MN + + L Sbjct: 31 KESNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENLSSILG 90 Query: 79 LAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + + +GK + I G V +++ I +D + + + Sbjct: 91 VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYSNVLSVG 143 >gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus SAFR-032] Length = 148 Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 10/138 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V T K TLG+D FLK+L+TQ+++QDPT P+ E V QLA FS +EQ Sbjct: 8 NRTVTQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67 Query: 64 VQMNSTLQELLKSNNL--------AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113 MN ++ +L + + +IGK ++ D ISG V +++ + Sbjct: 68 TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127 Query: 114 ITVDNTEIPITTGIRISN 131 D +I + Sbjct: 128 YLEDGMKISPWDVTAVGE 145 >gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp. WCH70] gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70] Length = 140 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + + + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ Sbjct: 7 SSLLLDNYKPPERKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQM 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDN 118 + ++S +++ +K+ L + S +IGKN+ + + SG+V ++ + + Sbjct: 67 INISSMIEQFIKTQHDHALLRYSEWIGKNVYWQEDENTKSGIVQSVSQKDQQIFLELDNG 126 Query: 119 TEIPITTGIRI 129 T I + +++ Sbjct: 127 TTIKASLVVKV 137 >gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514] gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561] gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513] gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 131 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 8/133 (6%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T S LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116 +EQ MNS++ + N + + I IT+ +G ++ G V+ + G + V Sbjct: 61 LEQMQNMNSSINAIRAINLIGKN---IYATITDNNGNSRTVIGKVDVV-YKQNGEYFLEV 116 Query: 117 DNTEIPITTGIRI 129 + +IP+ + Sbjct: 117 NGIDIPLDAVTAV 129 >gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421] gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis] gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421] Length = 163 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 4/132 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +E++ Q E K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ + Sbjct: 26 LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVVNAIQVSSTGLTAITVDN 118 EQ ++ + ++L + ++A + +GK + DGSI SGV+ A + + + VD Sbjct: 86 EQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA--ATRGEIPQVQVDG 143 Query: 119 TEIPITTGIRIS 130 +T + Sbjct: 144 KWYDWSTVKTVY 155 >gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis 2002] Length = 164 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ + Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118 +N + + L S IG+ + + +I G +++I+V + V+ Sbjct: 69 QNLNESFEFLKAQ-------SMIGRYVVATNPADTSKTIEGRIDSIRV-DGSKVYLKVNG 120 Query: 119 TEIPITTGIRIS 130 TE+ + Sbjct: 121 TEVLSDNVKEVY 132 >gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1] gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1] Length = 147 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G+ + G V +I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGNGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652] gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512] Length = 141 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 59/112 (52%), Positives = 85/112 (75%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Sbjct: 23 KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 83 TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S] gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S] Length = 147 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 5/119 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L Sbjct: 28 NNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLS 87 Query: 75 KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S + + +GK I G + G V +I+ + + + V+ + + Sbjct: 88 SSLEIRKDLDLLGKVIKFQHGDGEIVKGRVTSIK--TGAMPQVMVNGNYYVYKNILSVG 144 >gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp. 4-46] gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 142 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/117 (42%), Positives = 81/117 (69%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + SK+ +L DAFL+LL+TQ+K+QDPT+PM ++ + +LA FS++EQS +MN+ L L Sbjct: 26 PTTSKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDAL 85 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 L SN L+QA S IG+ T+ DG I+GVV ++++++ G A D ++ + G+ +S Sbjct: 86 LSSNYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142 >gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 194 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +K LG+D FLKLL+TQ+ HQDPT P++ + +AQ+A FS +EQ ++S + + Sbjct: 48 REKQKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM--- 104 Query: 77 NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D ++G+ AI + G T + V+ + ++ IS+ Sbjct: 105 -ESKQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVSKINLISD 162 >gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii PKo] gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo] Length = 147 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V +I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli Brasil 5] Length = 118 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 58/111 (52%), Positives = 84/111 (75%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S++L Sbjct: 1 ATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLT 60 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 61 QASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111 >gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN 42] gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42] Length = 142 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 60/115 (52%), Positives = 88/115 (76%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ GV+++++V S G+ A T D +I + GI +++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135 >gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC 51888] Length = 136 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 80/123 (65%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + TL + FLKL++ Q+++QDP P +++ ++Q+A FS +EQ + Sbjct: 9 NTSGTSNADANDKTKNSTLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGI 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 N+ L +LL ++N++QAS+ IG ++T+ADGS+SG+V ++++ STG TAI + E+ I Sbjct: 69 NTNAKLDQLLVNSNISQASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRID 128 Query: 125 TGI 127 G+ Sbjct: 129 QGV 131 >gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 242 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 6/118 (5%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 I ++ K K LGQD FLKLL+TQ+++QDP PM+ E +AQ+A FS +E Sbjct: 8 NILGRAEADMAASNQPKHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLE 67 Query: 62 QSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTA 113 Q Q+NS ++ ++ +N + A +IGK + SIS G ++ + A Sbjct: 68 QLTQVNSNIKTMIDNNAQDQMVSAVGFIGKEVKAEGYSISRDNGKISKVFYGLGEPVA 125 >gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata IAM 12614] Length = 131 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 1/125 (0%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ + T+ D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+Q Sbjct: 8 SATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSIQ 67 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 N+ L+ LL + + Q IG+ +T+A+G+ +GVV ++V S G + I + Sbjct: 68 TNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDGTVLALDNGKGILLGP 126 Query: 126 GIRIS 130 G+ IS Sbjct: 127 GVTIS 131 >gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 271 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 46 RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISTGIQKM--- 102 Query: 77 NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +++G+ A+ G T + V+ I + IS+ Sbjct: 103 -GNRQSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a] gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23] gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1] gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40] Length = 147 Score = 97.8 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ Sbjct: 17 NKVKKKTDFNVENISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120 M+ + ++L S + + +GK I G + G V I+ + + + V+ Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134 Query: 121 IPITTGIRIS 130 + + Sbjct: 135 YVYKNILSVG 144 >gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW 200] Length = 131 Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%) Query: 1 MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M+INT N T ++ + SK LG+D FLKLL+TQ+K+QDP PM E +AQLA FS Sbjct: 1 MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +EQ MNS+ + N + + + +++G V+ + G + V+ Sbjct: 61 LEQMQNMNSSFNAVRAINLIGKNIYATITDNNGNSQTVTGKVDVV-YKQNGEYFLQVNGI 119 Query: 120 EIPITTGIRISN 131 ++P+ +S Sbjct: 120 DVPVDAVTAVSE 131 >gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus kaustophilus HTA426] gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3] gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426] gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3] Length = 142 Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + Sbjct: 13 ANAVQPERKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIAN 72 Query: 69 TLQELLKSNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPI 123 +Q+ +++++ L + S +IGK + DG +S VV ++ +T + T I Sbjct: 73 LMQQWMQASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAA 132 Query: 124 TTGIRI 129 +++ Sbjct: 133 DAVVKV 138 >gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly] gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly] Length = 146 Score = 97.4 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 LG+D FLKLL+TQ+K+QDPTEPMK E ++Q+A FS +EQ M+ + + L Sbjct: 31 KGSNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENLSSILG 90 Query: 79 LAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + + +GK + I G V +++ I +D + + Sbjct: 91 VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYNNVLSVG 143 >gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus halodurans C-125] gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125] Length = 171 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + LG+D FL++LI Q+++QDP PM E +AQ+A FS +EQ MNS + Sbjct: 14 ENRPKEQSNSGILGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAI 73 Query: 71 QELL---KSNNLAQASSYIGKNITN-----------ADGSISGVVNAIQVSSTGLTAITV 116 Q+ + S L Q S IGK +T + + V ++++ + G +I + Sbjct: 74 QQFVKQQTSQTLVQHSELIGKRVTWKRIIDIDEYRQKEELVENTVTSVRLETNGNVSIQL 133 Query: 117 D-NTEIPITTGIRIS 130 D I +++S Sbjct: 134 DSGRWISADQLVQVS 148 >gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84] Length = 158 Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 75/108 (69%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L + FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++ ++QA Sbjct: 28 LNYNDFLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQA 87 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S YIGK I +ADG+ +G + + V S G+ A T +I + G+ ++ Sbjct: 88 SDYIGKEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135 >gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans SI85-9A1] Length = 134 Score = 97.4 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 72/126 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T Q S + K + DAFLKLL+ ++ +QDP P ++E VAQ A FS +EQ++ Sbjct: 9 TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 Q N L ++ + L QA+S IG+ T+ADG++SG V A++ + + AI +P+ Sbjct: 69 QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128 Query: 125 TGIRIS 130 +G + Sbjct: 129 SGTTVG 134 >gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi B31] gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi 80a] gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805] gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi] gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi] gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31] gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7] gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a] gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b] gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a] gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a] gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a] gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26] gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805] Length = 147 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N T +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ Sbjct: 17 NKVKKKTDFNVDNISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120 M+ + ++L S + + +GK I G + G V I+ + + + V+ Sbjct: 77 ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134 Query: 121 IPITTGIRIS 130 + + Sbjct: 135 YVYKNILSVG 144 >gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17025] gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 218 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME+++ +PT S T + FL++L TQ+++QDP PM++ + QLA FS + Sbjct: 1 MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60 Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93 EQ V+ N L + S L++ + +IG+ Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGREARVE 96 >gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp. Y412MC61] gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61] gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52] Length = 142 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 5/126 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + + LG+D FLK+L+ Q+++QDP PM+ + +AQ+A FS +EQ + + + Sbjct: 13 ANAVQPERKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIAN 72 Query: 69 TLQELLKSNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPI 123 +Q+ +++++ L + S +IGK + DG +S VV ++ +T + T I Sbjct: 73 LMQQWMQASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAA 132 Query: 124 TTGIRI 129 +++ Sbjct: 133 DAVVKV 138 >gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 263 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + LG++ FL LL+TQ+ HQDP PM E VAQLA FS +EQ ++ + Sbjct: 16 TNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGGI 75 Query: 71 QELLKSNNLAQASS---YIGKNITNADGSIS---GVVNAIQVSSTGLTA 113 L ++N Q S +IGK + A S+S G +++ + Sbjct: 76 DNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALNAPIV 124 >gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1] Length = 222 Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%) Query: 1 MEINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M I+ + ++ + ++ + LGQD FLKL+ITQ+++QDP PM++ E ++Q+A F+ Sbjct: 1 MNISGAGSGDYSRAQPTQREPAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFT 60 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVS 107 Q+ + E +++N QA+S +G+ + DG ++G+V Sbjct: 61 TASGMDQLQKSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIVQLPSAV 120 Query: 108 STGLTAI 114 + I Sbjct: 121 ANANIHI 127 >gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1] Length = 211 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 14/141 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + + Q+ + K LG+D F+K+L+TQ+++QDP PM+ + +AQ+A FS +EQ Sbjct: 7 SNLLLSSLQQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQI 66 Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS-----------GVVNAIQVSST 109 ++ +++ ++ NNL + ++GK IT S G+V++++ Sbjct: 67 TNLSKSMETFIEAQGQNNLIAYNQFVGKEITWHKLEESSEGRTEIKEGKGIVSSVRFQDN 126 Query: 110 GLTAITVDNTEIPITTGIRIS 130 + I + T + +++ Sbjct: 127 EVQFIMENGTILAPGNVSQVN 147 >gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1] gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1] Length = 147 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + + V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144 >gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR] gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR] Length = 146 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + QE K LG+D FLKLL+TQ+K+QDP EP + +AQ+A FS +E Sbjct: 6 NVSDAGSTQSQEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALE 65 Query: 62 QSVQMNSTLQELLKSNN-------LAQASSYIGKNITN----ADGSISGVVNAIQVSSTG 110 Q M+ +L++ ++QA IGK + + ++G V A+++ G Sbjct: 66 QMTNMSDGFTKLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIV-DG 124 Query: 111 LTAITVDNTEIPITTGIRI 129 + V+ EI + + Sbjct: 125 EPRVVVNGKEIGLGYISMV 143 >gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116] gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116] Length = 147 Score = 97.0 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +K LG+D FLKLLITQ+++QDPT PMK E +AQ+A FS +EQ M+ + ++L S Sbjct: 31 ANKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSL 90 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + + +GK I G + G V I+ + + I V+ + + Sbjct: 91 EIRKDLDLLGKVIKFQHGDGEIVKGRVTNIK--TGAIPQIMVNGNYYVYKNILSVG 144 >gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC 49176] Length = 317 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + LG+D+FLKLL Q+++QDP +P +E V+QLA +S +EQ +N+T+ Sbjct: 33 QNVKTADDLNKLGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIA 92 Query: 72 ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + Q K+ + ++SG V+ + V + +++D P + + N Sbjct: 93 NSQAYGLIGQEVVMAAKDSDGHETTVSGKVDFVSVKGN-KSYLSIDGNLYPASDLQSVIN 151 >gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 142 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 7/136 (5%) Query: 1 MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M +N + VN + K + K LG+D FLKLLITQ+ HQDP EP+ +E +AQ+A FS Sbjct: 1 MAVNQVSSVNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFS 60 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAI 114 +EQ + ++ LL L SYIGK + D + V + + Sbjct: 61 TLEQMTNVAKGVESLLSVTKLNAQ-SYIGKEVIYYDDNTGLYQQSSVRSAIFEDGEVYLE 119 Query: 115 TVDNTEIPITTGIRIS 130 + I + ++ Sbjct: 120 LENGKYILLDEIKAVT 135 >gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10] Length = 186 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 11/131 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ Sbjct: 16 AKGNISTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75 Query: 69 TLQELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTE 120 L + S +L ASS IGK I+ DGS SG+V++I + G+ V E Sbjct: 76 QLTAM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSI-IVRDGVHYAKVGENE 132 Query: 121 IPITTGIRISN 131 + + ++I N Sbjct: 133 VSLDQIVKIEN 143 >gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 264 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 46 RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM--- 102 Query: 77 NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+ Sbjct: 103 -GNRQSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus thermodenitrificans NG80-2] gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16] gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans NG80-2] gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16] Length = 142 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + + LG+D FLK+L+ Q+++QDP PM+ E +AQ+A FS +EQ + + + Sbjct: 13 ANAVQPERKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIAN 72 Query: 69 TLQELLKSN---NLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +Q+ ++++ L + S +IGK + D ++S VV ++ + + T I Sbjct: 73 LMQQWMQASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSVMQKDGKIVLELNNGTTIAA 132 Query: 124 TTGIRI 129 ++ Sbjct: 133 DVVTKV 138 >gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1] Length = 145 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 15/144 (10%) Query: 1 MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M +N + S + + L ++AFLKLLI ++ +QDP PM+ E +AQ+A F Sbjct: 1 MPVNGVAGAVNTDPSAATGAVRQNELDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----------ISGVVNAIQV 106 S +EQ MN TL+ + +++ A SYIGK I+ + + +V A+ Sbjct: 61 SSLEQMQNMNKTLESMAQASKFD-AVSYIGKAISFNKITKDEKGKEVETPTAALVRAVFF 119 Query: 107 SSTGLTAITVDNTEIPITTGIRIS 130 + ++ + + ++ Sbjct: 120 DPQKGPILDTAEGQVELAKVLGVA 143 >gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 6/131 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 TQQ + + + + +D FL+LL+TQ+++QDP +P SE VAQ+A F+ +EQ Sbjct: 8 GTTAATQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQ 67 Query: 65 QMNSTLQELLKSNNLA--QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNT 119 +N+T+ +LL + A +++G ++T D + ++G+V+A++ G + +D Sbjct: 68 NLNNTMAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVEY-DNGKPRLVIDGN 126 Query: 120 EIPITTGIRIS 130 + + +++ Sbjct: 127 RYGLESVQKVT 137 >gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1] Length = 374 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 101 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 160 Query: 70 LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ I + + +G V+A++ + G + + ++ Sbjct: 161 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 220 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 221 MEDILGIAD 229 >gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04] gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04] Length = 147 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%) Query: 2 EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 ++ N ++ + +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A Sbjct: 9 NVSNLTNSSKIKKESEFKVDNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 FS +EQ M+ + ++L S + + +GK I + G V I+ + + Sbjct: 69 QFSALEQMTNMSKSFEKLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIP 126 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ + + Sbjct: 127 QVMVNGNYYVYKNILSVG 144 >gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae 3841] Length = 142 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++SK TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 21 AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI I++ Sbjct: 81 SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135 >gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans serovar Lai str. 56601] Length = 264 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 8/119 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + K+LG+D FLKLLITQ+ QDPT P+K + +AQ+A FS +EQ +++ +Q++ Sbjct: 46 RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM--- 102 Query: 77 NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 Q+ S +GK ++ D +I+G+ A+ G T + V+ I + IS+ Sbjct: 103 -GNRQSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160 >gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii PBi] gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi] Length = 147 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 11/138 (7%) Query: 2 EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 ++ N ++ + SK LG+D FLKLLITQ+++QDPT PMK E ++Q+A Sbjct: 9 NVSNLTNSSKIKKESDFKIDNVSSKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 FS +EQ M+ + ++L S + + +GK I + G V I+ + + Sbjct: 69 QFSALEQMTNMSKSFEKLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGTIP 126 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ + + Sbjct: 127 QVMVNGNYYVYKNILSVG 144 >gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr] gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr] Length = 147 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 2 EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 ++ N ++ + +K LG+D FLKLLITQ+++QDPT PMK E ++Q+A Sbjct: 9 NVSNLTNSSKIKKESDFKVDNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 FS +EQ M+ + + L S + + +GK I + G V I+ + + Sbjct: 69 QFSALEQMTNMSKSFERLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIP 126 Query: 113 AITVDNTEIPITTGIRIS 130 + V+ + + Sbjct: 127 QVMVNGNYYVYKNILSVG 144 >gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 152 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + + L +AFL L + +K QDPT+P+ +E + QLA FS +EQS Sbjct: 10 NGASSNEPVFKPQGSEQAYLDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQS 69 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNT 119 + N+ L +L+ +++ QA++ IG + + + +GV+ ++Q+ + G A D T Sbjct: 70 TKTNTHLTAMLQQHSINQANNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGT 129 Query: 120 EIPITTGIRIS 130 ++ + GI IS Sbjct: 130 KVALVPGIEIS 140 >gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +I ++ T E + +K LGQ FL+L+ITQ+++QDP +PM++ E + QLA F + Sbjct: 10 DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113 + + + + S QA++ + +++T I G+ A+QV ++ Sbjct: 70 GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129 Query: 114 ITVDNTEIPI 123 I V N + Sbjct: 130 IGVYNQAGQL 139 >gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM 16646] Length = 129 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + + + + LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS + Sbjct: 4 VNFTAASQTYSGDDNPAVGRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSL 63 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITVDN 118 EQ +NS + + A S+IGK + +SG++ + L I D Sbjct: 64 EQLQNLNSQISAM-------SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDE 116 Query: 119 TE-IPITTGIRI 129 + +P+ I Sbjct: 117 EKLVPLQDVYEI 128 >gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium] Length = 159 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME++T Q K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+ + Sbjct: 29 MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTSL 86 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDN 118 EQ MN L + + A + +GK + G++SG + A + V+ Sbjct: 87 EQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITAATRGEN--PQVQVNG 144 Query: 119 TEIPITTGIRIS 130 + + Sbjct: 145 KWYAWSDVQTVY 156 >gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM 14863] Length = 139 Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + Q + LG+ FL+LL+TQ+++QDP P+ E +AQLA FS +EQ Sbjct: 12 GTASGAGQTAESRRPTDQLGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQMT 71 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEI 121 E ++ L+ S +G + G+V A+++ +G + + N EI Sbjct: 72 -------ENVRWARLSYGLSLVGAAVKYWGTEGQPEIGIVYAVRI-DSGEPLLNLGNREI 123 Query: 122 PITTGIRIS 130 + I ++ Sbjct: 124 RLEQVIEVA 132 >gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16] Length = 335 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 65 TDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 124 Query: 70 LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ I + + +G V+A++ + G + + ++ Sbjct: 125 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 184 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 185 MEDILGIAD 193 >gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522] Length = 149 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ K+++ L +DAFL++LITQ+++QDP PM+ E +AQ+A F+ +EQ MN+ LQ Sbjct: 15 QKQQKARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQ 74 Query: 72 ELLKS--NNLAQASSYIGKNITNADGS-----------ISGVVNAIQVSSTGLTAITVDN 118 + L S N S IGK + + GVV +++ + + + D Sbjct: 75 KFLDSHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQNGSASLVIDDQ 134 Query: 119 TEIPITTGIRI 129 + I Sbjct: 135 HTVSTKDIQVI 145 >gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453] gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453] Length = 188 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 12/132 (9%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ Sbjct: 16 AKGNVSNKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75 Query: 69 TLQELLKSNNLAQASSYIGKNITN----ADGS-----ISGVVNAIQVSSTGLTAITVDNT 119 L + S +L ASS IGK I+ DGS SG+V++I + G+ + + Sbjct: 76 QLTAM--SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSI-IVRDGIHYAKIGES 132 Query: 120 EIPITTGIRISN 131 E+ + ++I N Sbjct: 133 EVALDQILKIEN 144 >gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium extorquens PA1] gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium chloromethanicum CM4] gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 138 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 49/109 (44%), Positives = 74/109 (67%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG ISG V +++V+ G+ A D E+ + +GI IS Sbjct: 90 ADAIIGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ Sbjct: 8 SALGALPQAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQL 67 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 + L L S+N ++ +GK + + +++ G V Sbjct: 68 GALGDKLDTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---T 117 Query: 121 IPITTGIRIS 130 +P G ++ Sbjct: 118 LPADAGEAVA 127 >gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 141 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 73/113 (64%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 T+ +FL+LL+ ++K+QDPT P ++ ++QLA FS +EQ VQ NS L LL +++ Sbjct: 29 PPATVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASS 88 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 L QA + IGK IT+ADGSISG V ++ VSS TA + ++ + GI I + Sbjct: 89 LGQAETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141 >gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5] gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5] Length = 186 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 11/131 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +K+ + + LG+D FL +LITQ++HQDP +PM+ E +AQ+A F+ +EQ + +N+ Sbjct: 16 AKGNVSTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75 Query: 69 TLQELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTE 120 L + S +L ASS IGK I+ DGS SG+V++I V G+ V +E Sbjct: 76 QLTAM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESE 132 Query: 121 IPITTGIRISN 131 + + ++I N Sbjct: 133 VSLDQIVKIEN 143 >gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51] gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 193 Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 14/130 (10%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ L+ Sbjct: 28 SDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVG 87 Query: 75 ------KSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGL--TAITVDNTE--I 121 +++ L+Q ++ IGK + + G+V ++Q + D I Sbjct: 88 AFGALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQWLDGNPQLVVLLDDGKYSAI 147 Query: 122 PITTGIRISN 131 + I +S+ Sbjct: 148 EMNEIISVSD 157 >gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO] gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO] Length = 219 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 6/116 (5%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + + S+ TL +DAFL LLITQ+K+QDP EPM + +AQL FS +EQ M Sbjct: 7 YSYSTYTSSERTPSNTLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITNM 66 Query: 67 NSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 +++QE L AQ++S IGK T I+ GV +I + V Sbjct: 67 TNSIQEFLTLQEGALQAQSASLIGKYATVQANQITVSDGVSESIVFELDEAAPVIV 122 >gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073] gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073] Length = 140 Score = 94.3 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 K LG+D FLKLL Q+++QDP P+ ++ +AQ+A FS +EQ + + E L Sbjct: 19 PNKGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL---- 74 Query: 79 LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + QA IGK +T D +++G V+ + S G+ +TV ++ + ++ Sbjct: 75 MLQAVGLIGKEVTARINDQTLTGTVSKVNWSPEGII-LTVGEQQVSLKDVQEVA 127 >gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Query: 3 INTEVNP-TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + + Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +E Sbjct: 6 VTSALGALPQPGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVE 65 Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNIT 91 Q + L L S+N ++ +GK + Sbjct: 66 QLGALGDKLDTLAVAQASSNQLGTAALVGKEVL 98 >gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260] Length = 139 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + K LG+D FLKLLI Q+ +QDP +P+K + +AQ+A F+ +EQ+ M ++ L Sbjct: 23 ERTIKNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETL-T 81 Query: 76 SNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ++ A Y+G+ + + S +G V ++ +T D + + + +++ Sbjct: 82 KLSMTSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLALDKVEQVA 139 >gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis 108] Length = 164 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 13/132 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V+ + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLTAITVDN 118 +N +++ L +A S IG+ + A I G V++I++ + V+ Sbjct: 69 QNLNESVE-------LLKAQSMIGRYVVATSPQDASKLIEGRVDSIKI-DGSKVYLKVNG 120 Query: 119 TEIPITTGIRIS 130 TE+ + Sbjct: 121 TEVLSDNVKEVY 132 >gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1] Length = 264 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT-AITVDNTEIPITT 125 + + S +GK++ A G V + + TG+ A+ DN I + Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITVRP 145 >gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56] Length = 159 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 57/115 (49%), Positives = 85/115 (73%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S Sbjct: 35 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 95 SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149 >gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K] gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K] Length = 225 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + Q + + + LG+DAFLKLL TQ++HQDP PM + VAQLA FS +EQ Sbjct: 8 SALGALPQAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQL 67 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 + L L S+N ++ +GK + + +++ G V Sbjct: 68 GALGDKLDTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---T 117 Query: 121 IPITTGIRIS 130 +P G ++ Sbjct: 118 LPAEAGEAVA 127 >gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisA53] gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 135 Score = 93.6 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 3/133 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ N ++ S S S T+G + FL+LLI Q+K+QDP+ P ++ ++Q A S + Sbjct: 3 VDGVGAANSSKSSSSSSSSSATVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117 EQ++Q N+ L LL ++ L+QA IG+ + D S +G + ++ + G A Sbjct: 63 EQAIQTNAKLDTLLSTSALSQAEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDT 122 Query: 118 NTEIPITTGIRIS 130 ++ + GI IS Sbjct: 123 GVQVLLGPGITIS 135 >gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC 35239] Length = 334 Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 70 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 129 Query: 70 LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ I + + +G V+A++ + G + + ++ Sbjct: 130 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 189 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 190 MEDILGIAD 198 >gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 167 Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 21/140 (15%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 S LG+DAFLKL+I Q+++QDP PM ++ VAQ+A F+ +EQ ++ Sbjct: 15 SQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNISE 74 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSIS------------------GVVNAIQVSSTG 110 + L +S L S IGK +T + + G+V +I + +G Sbjct: 75 QIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESI-IVRSG 131 Query: 111 LTAITVDNTEIPITTGIRIS 130 + + V + EI I+ ++ Sbjct: 132 VHYVKVGDKEIKISDIEQVG 151 >gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243] Length = 336 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + +K + LG+D F+KLL+ +K+QDPT+PM ++ + Q + + MEQ +QM Sbjct: 72 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 131 Query: 70 LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 + ++ Q +S +G+ I + + +G V+A++ + G + + ++ Sbjct: 132 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 191 Query: 123 ITTGIRISN 131 + + I++ Sbjct: 192 MEDILGIAD 200 >gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +I + + SK KS LGQ FL+L+ Q+KHQDP PM+ S + Q+A FS ++ Sbjct: 7 DIYSSLGLGPATTSKDKSDS-LGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQ 65 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110 +NS Q L S+ L + ++ +G+++ GS G V A S Sbjct: 66 GIETLNSQVRAFQSALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQ 125 Query: 111 LTAITVDNTEI 121 T + + Sbjct: 126 FTVTDANGRTV 136 >gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans ASO3-1] Length = 241 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + + LG+ FLKLLITQ+++QDP +PM E VAQLA FS +EQ ++ Sbjct: 18 ANNDIPRDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEG 77 Query: 70 LQELLKSNN---LAQASSYIGKNITNADGSIS 98 ++ + ++ + A +IGK I IS Sbjct: 78 MESMNENQARQEMLGAVGFIGKEIRADGDGIS 109 >gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus 6A] Length = 164 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 3/127 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T V + Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ Sbjct: 9 STNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +N + + L N + + + N ++ I G V +++V + V+NTEI Sbjct: 69 QNLNESFELLKAQNMIGRY--IVATNPQDSSKQIEGRVESVKV-DGSKVYLKVNNTEISS 125 Query: 124 TTGIRIS 130 I Sbjct: 126 ENVKEIY 132 >gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159] Length = 146 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 L + AFL LL+ Q+K+QDP PM+ E +AQLA + +EQ Q Sbjct: 8 VTTNPLSSGGGVGPGGQLDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQ 67 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITN----ADGSISGVVNAIQVSSTGLTAITVDNTEI 121 +N T+ + + L Q + Y+G+ ++ + ++G V + I Sbjct: 68 LNETVAAMAQHAALGQVAGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAVLELSGGQRI 127 Query: 122 PITTGIRI 129 + + I Sbjct: 128 DVRDVVSI 135 >gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium extorquens DM4] gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein [Methylobacterium extorquens DM4] Length = 138 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 73/109 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 30 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 90 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis OB47] Length = 171 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +Q + S K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + Sbjct: 17 KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76 Query: 71 QELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 + L +A S IG+ I I G V++I+V + V+ TE+ Sbjct: 77 E-------LLKAQSMIGRYIVATSTQDGLKQIEGRVDSIRV-DGSKVFLKVNGTEVLSDN 128 Query: 126 GIRIS 130 + Sbjct: 129 IKEVY 133 >gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2] Length = 184 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 72/130 (55%), Gaps = 15/130 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 +K+ LG+D FLKLL+ ++ +QDP PM + + Q+A FS +EQ M+ +++ L+ Sbjct: 25 SDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVG 84 Query: 75 ------KSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGL--TAITVDNTE-- 120 +++ L+Q ++ IGK++ A+ G ++G+V ++Q + + D ++ Sbjct: 85 AFGALFQNSLLSQGAALIGKHVEGANIDGSGFVNGIVESVQWLNGNPQLVLVLEDGSKAA 144 Query: 121 IPITTGIRIS 130 + ++ ++ Sbjct: 145 VDMSDITYVA 154 >gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1] Length = 136 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K LG+D FLKLL+ Q+++QDP +PM+ E +AQ+A FS +EQ +NST+ + Sbjct: 22 KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77 Query: 78 NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QA IGK + + + +G V A+++ S I V +T + ++ + Sbjct: 78 ---QAMGLIGKTVRWQNENGAEQAGNVRAVKI-SDRQPYIVVGDTTVELSKIQVVEE 130 >gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein [Methylobacterium extorquens AM1] Length = 135 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 73/109 (66%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 + D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Q Sbjct: 27 KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + IG+++T+ADG SG V +++V+ G+ A D E+ + +GI IS Sbjct: 87 ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135 >gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273] gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272] gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273] Length = 192 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + RIS+ Sbjct: 147 QLVIDNKVVSLRFVERISD 165 >gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 144 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 55/112 (49%), Positives = 82/112 (73%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L LL S++L Sbjct: 24 KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASSSL 83 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QASSY+GK + +ADG++ G + +++V S G+ A T D I + GI +++ Sbjct: 84 TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135 >gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia R551-3] gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYSALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110 +N T QE + S+ + + ++ +G + +G++ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAAPAAGIVT 131 Query: 111 LTAITVDNTEIP 122 + + ++ Sbjct: 132 VDITDANGAKVT 143 >gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL] Length = 170 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 13/119 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N++ + L Sbjct: 22 SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSFEFLKAQ 81 Query: 77 NNLAQASSYIGKNITNADG-----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S IG+ + + I G V++I+V + V++TE+ + Sbjct: 82 -------SMIGRYVIATNAQDGARQIEGRVDSIRV-DGSKVFLKVNDTEVLSDNVKEVY 132 >gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli 95/1000] gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli 95/1000] Length = 233 Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + +K +LG+D FLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAIT 115 + + + S +GK++ A G V + + TG+ Sbjct: 87 ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134 >gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252] Length = 230 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + + L ++AFL+LL+TQ+++QDP P+ + E AQLA FS +EQ + +N Sbjct: 15 ALQSTPSAPAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGIN 74 Query: 68 STLQELLKSNNLAQA-------SSYIGKNITNADGSIS 98 TL + + +GK I ++ Sbjct: 75 ETLAAQSDAYAALAQGIHNSVAAGLVGKVIEAEGDRLT 112 >gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 164 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q + S +K LG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + + Sbjct: 17 QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE 76 Query: 72 ELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L +A S IG+ + + I G V +++V + V+NTEI Sbjct: 77 -------LLKAQSMIGRYVVATNPQDSSKQIEGRVESVKV-DGSKVYLKVNNTEISSENV 128 Query: 127 IRIS 130 I Sbjct: 129 KEIY 132 >gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM 4028] Length = 226 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + LG+DAFLKLL+TQ+++QDP P+ E +AQLA FS +EQ ++ ++ Sbjct: 14 GADTAAKNDVLGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKG 73 Query: 73 LL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITVDNTEIPITTG 126 L ++ A +YIGK +T + I+ V + + G A N Sbjct: 74 LSDKTAQQDMLSAVNYIGKEVTASGDGITKSGNYVTPVYFTLGGAAAQVYANVYDENNNI 133 Query: 127 IR 128 +R Sbjct: 134 VR 135 >gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912] Length = 151 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS + Sbjct: 9 MNAANSSGYASPTSVINP-NSQLDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSAL 67 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDN 118 EQ + ++ + + A+ +IGK I+ D G+I V GL + + Sbjct: 68 EQMTNVAEGQEKAATATEMQAAAEWIGKRISYLDDKGNIQSGVAQAMQVKEGLVYLDLGG 127 Query: 119 TEIPITTGIRISN 131 +P ++ + + + Sbjct: 128 LSVPWSSILEVGD 140 >gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii KSM-K16] gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus clausii KSM-K16] Length = 144 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 7/134 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + + + + + LGQDAFLKLLITQ+++QDP+ P++ E +AQLA FSQ+EQ Sbjct: 4 VDPSLWLSSSQNQQRQPNNALGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLEQ 63 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITV 116 ++NST++ + KS L S IGK++ + V ++ S +G + + Sbjct: 64 LTKLNSTMEYMYYEQKSQQLMALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQI 123 Query: 117 -DNTEIPITTGIRI 129 D+ I + I I Sbjct: 124 DDDKWIEASKLISI 137 >gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2] Length = 297 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 16/137 (11%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I ++ T + ++ LG+D F+ LL+TQ+++QDP P ++ +AQ+A FS +EQ Sbjct: 12 IQQIIDDTSATKASERNTGELGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQ 71 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114 +N+ S + QA IGK +T +I+G V ++++ +G + Sbjct: 72 MQNLNT-------SYSATQAFGMIGKTVTANLKDGDSSKTNTITGEVTSVKM-QSGKAYV 123 Query: 115 TVDNTEIPITTGIRISN 131 V+ +IP+ + + Sbjct: 124 IVNGNDIPVENVQEVKD 140 >gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium populi BJ001] gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 138 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 48/110 (43%), Positives = 74/110 (67%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 + D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N L LL S+ L Sbjct: 29 SKMNADTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLN 88 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 QA + IG++IT+ADG +G V +++V+ G+ A D E+ + +GI IS Sbjct: 89 QADAIIGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138 >gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427] Length = 270 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + K + L +DAF+ LL+TQ+K+QDP +P+ SE +AQLA F+ +EQ + + Q+ Sbjct: 19 TEEVKEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQ 78 Query: 74 LKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 L + + + Y+ K+ T + G V+ ++VS + + + E+ + ++ + Sbjct: 79 LANGMIGKYVEYLYKDSETGTSEYLVGKVDYVKVSGDTPV-LGIGDVEVNLEDVYQVYD 136 >gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025] Length = 225 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + + +++K LGQ+ FLKLL TQ+++QDP +PM+ E +AQ+A FS + Sbjct: 7 VDGSYAAGLAMKTATQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 66 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 Q+N TL + L S A A+S IG+++ Sbjct: 67 SGIEQLNGTLSGIGEGLGSFRTATAASLIGRSVLVPG 103 >gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271] gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271] Length = 192 Score = 92.0 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L+ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LKSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus donghaensis MPA1U2] Length = 143 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 9/138 (6%) Query: 1 MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M I+T + +K + LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F Sbjct: 1 MNISTATSGIATASASATKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS--GVVNAIQVSSTGLT 112 + +EQ +N T+ + + + + + IG ++ + S G+V A+ + L Sbjct: 61 TSLEQLTNLNKTMTQFVSNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELL 120 Query: 113 AITVD-NTEIPITTGIRI 129 A +T++PI + I I Sbjct: 121 AELEGSDTKVPIASIIHI 138 >gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241] Length = 192 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M Sbjct: 36 QTNGVSAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMT 95 Query: 68 ---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121 +L+ + S + ++GK + DG+ ++G V ++++ + +DN + Sbjct: 96 KAVDSLKTTMYSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVV 155 Query: 122 PITTGIRISN 131 + R+S+ Sbjct: 156 SLRFVERVSD 165 >gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00] Length = 279 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + V+ FS+ K LG++ FLKLL+TQ K+QDP PM+ E +AQLA FS +EQ + Sbjct: 7 SGVSSATGIFSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQM 66 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 N ++ LL + A+S+IGK + +S + I + V Sbjct: 67 STNEKMESLLNLQTQQQMISAASFIGKEVAARGYGVSVKGDTISNIQYAINEEMVKG 123 >gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803] gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803] Length = 192 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P Q S+ K+ + +D FLKL + +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVGQTNGVSASEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTG 110 S MEQ M + L + S L ++GK + ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 145 EVQLVIDNKVVSLRFVERVSD 165 >gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b] Length = 233 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 11/137 (8%) Query: 4 NTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + +++ K L + FLK+L Q+++QDP P+++++ QLA FS +E Sbjct: 18 SSIPSASANTTAEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVE 77 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKN------ITNADGSISGVVNAIQVSSTGLT 112 Q V+ N L+ L + + ++Q S ++G + ++ V + ++ Sbjct: 78 QQVRTNDLLETLGDRMGAMGMSQLSGWVGMEARAIAPVQLDGAPVTLTVPPVPLADAAQI 137 Query: 113 AITVDNTEIPITTGIRI 129 I + + I Sbjct: 138 VARDSTGTIVQRSDVSI 154 >gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus pseudofirmus OF4] Length = 169 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 15/136 (11%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 Q + + + + LG+D FLKLLITQ+++QDP+ PM E +AQ+A FS +EQ MN+T Sbjct: 12 NQPKPTSNTGQNMLGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNT 71 Query: 70 LQELL---KSNNLAQASSYIGKNITNADG-----------SISGVVNAIQVSSTGLTAI- 114 +Q+ + S +L Q S IGK + V +++V G I Sbjct: 72 IQKFVDVQTSQSLVQFSELIGKEVKWVQEVDVDEYRTELQYNDNKVQSVKVDFDGTIRIL 131 Query: 115 TVDNTEIPITTGIRIS 130 +N I ++S Sbjct: 132 LDNNRWIHHEQLTQVS 147 >gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum] Length = 278 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 KK LG + ++ ++I Q+++QDP PM + +QLA FSQ++Q V MN ++ + Sbjct: 27 PPPQKKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMAN 86 Query: 76 S---NNLAQASSYIGKNITNADG 95 + Q ++G+ + Sbjct: 87 QGRETDALQMVGFLGREVFLKGN 109 >gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 131 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%) Query: 1 MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 ME+NT + + S++ S LG+D FL+LL+ Q+++QDP +PM E +AQLA FS Sbjct: 1 MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQ--VSSTGLTA 113 +EQ +N + N +A + IGKN+ T+ +G+ + VV + G Sbjct: 61 LEQMQNLNVSF-------NAVRAINLIGKNVYATITDDNGNSTSVVGNVDAVYKQNGEYY 113 Query: 114 ITVDNTEIPITTGIRISN 131 + V+ ++P+ +S Sbjct: 114 LEVNGIDVPLDAVTAVSE 131 >gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii NGR234] gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii NGR234] Length = 148 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 63/108 (58%), Positives = 84/108 (77%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 L +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA Sbjct: 33 LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+YIGK IT++DG SGVV ++V+S G+TAIT D EI I TGI +S Sbjct: 93 STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140 >gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 42/112 (37%), Positives = 75/112 (66%), Gaps = 1/112 (0%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + TL +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + + Sbjct: 21 DQLTLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMS 80 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 Q IG+ T+A G+ +GVV +++V S G + I + G++IS Sbjct: 81 FGQVDDLIGRTATDAIGT-TGVVTSVEVYSDGTLLGLDNGKGILLGPGVKIS 131 >gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus flavithermus WK1] gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1] Length = 163 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 26/150 (17%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + +Q + K +LG+D FLK+LI Q++HQDP PM+ E ++Q+A FS +EQ V Sbjct: 15 SLLLSQRQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSSLEQMV 74 Query: 65 QMNSTLQELLKSN------------------------NLAQASSYIGKNITNADGSISGV 100 M++ L + +++ +LAQ S +IGK +T SGV Sbjct: 75 NMSNMLSKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTW--DEQSGV 132 Query: 101 VNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 V A+ T + + + ++S Sbjct: 133 VRAVVQKGTDIWLELEQGETVLASRVTKVS 162 >gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293] Length = 149 Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 ++LG+D FLKLL+TQ+++QDPT+PM+ E +AQ+A FS +EQ ++ + + Sbjct: 33 NQSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLEQMNNLSQQFVSVKNTLGR 92 Query: 80 AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 A IG+ + D I G V A+ + V+ T + +SN Sbjct: 93 NAAYDLIGRQVDILQGDQKIHGTVEAVSGKD--YPQLLVNGTYYDYDSVETVSN 144 >gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9] Length = 163 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 10/133 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 Q+ + +K TLG+D FLK+L+TQ+++QDP++P++ + +AQ+A FS +EQ + Sbjct: 14 NYSTSNVQKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLM 73 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNA-------DGSISGVVNAIQVSSTGLTAITVD 117 M+ + +L NL ASS IG + + SG+V AI + G+ V Sbjct: 74 NMSEEMTKLR--QNLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIK-DGVQYAKVG 130 Query: 118 NTEIPITTGIRIS 130 + + + I+ Sbjct: 131 DKTVKVDDLTSIT 143 >gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11] Length = 134 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 75/109 (68%), Gaps = 1/109 (0%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81 T+ +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + + Q Sbjct: 27 TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IG+ +T+++G+ +GVV +++ S G + + + G+ IS Sbjct: 87 VDDLIGRTVTDSNGT-TGVVEKVEIYSDGTILGLDNGKGVLLGPGVSIS 134 >gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris str. Hildenborough] gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4] gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1] Length = 265 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 I + Q K LG+DAFL+LL+TQ+KHQDP PM E VAQLA F+ +E Sbjct: 7 NILGQAENEFQSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTSLE 66 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 Q + +N+ + + K + A SYIGK++ + IS + + + Sbjct: 67 QLMGINTGVTSMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGVSK 114 >gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 220 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ +N + + K L +DAFLKL +TQ+K+QDP PM EQ+AQLA FS + Sbjct: 2 IDTTAYLNSVNKNATPKTPSKDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTV 61 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 E+ ++ + L + + A+ YIGK + +S Sbjct: 62 ERLTNISKAMDGLTKTVNAMMGLNATGYIGKTVMAKGFGVS 102 >gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium HTCC2083] gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium HTCC2083] Length = 230 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +++ + + +K+ LGQD FLKL+ Q+++QDP PM + +AQ+A FS + Sbjct: 16 SKLGISTTDAKPEDAKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M TL + L + + + +G ++ + G +D Sbjct: 76 DMGKTLNTIADQLGQFRVGSSVNMLGHSVLLPGNI-------ARADDKGEVHGVLDLERT 128 Query: 122 PITTGIRISN 131 + T + + Sbjct: 129 SLETRVEFLD 138 >gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 150 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 12/130 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K + +D FLKL I Q+K+QDP EPM +E AQ + F+ +EQ + MNS+++ Sbjct: 15 TAGQSREIKSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSME 74 Query: 72 ELLKSNNLAQASSYIGKNITNA-----------DGSISGVVNAIQVSSTGLTAITVDNTE 120 E+L S L A SYIG +T + +G+V +I + + D +E Sbjct: 75 EML-SLQLGNAVSYIGFEVTYSHAYQDDQGNQLTEEKTGIVQSISHENGSVVLKMTDGSE 133 Query: 121 IPITTGIRIS 130 I+ I ++ Sbjct: 134 ADISRIISVA 143 >gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus weihenstephanensis KBAB4] gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4] Length = 192 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEF----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSESAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 147 QLVIDNKIVSLRFVERVSD 165 >gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1] Length = 237 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E + Sbjct: 16 NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118 + M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 76 LSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134 Query: 119 TEIPITTGIRIS 130 ++ +S Sbjct: 135 KMYDYSSLYSVS 146 >gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656] Length = 237 Score = 91.3 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E + Sbjct: 16 NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118 + M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 76 LSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134 Query: 119 TEIPITTGIRIS 130 ++ +S Sbjct: 135 KMYDYSSLYSVS 146 >gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629] Length = 237 Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ S S LG D FLKLL ++++QDP EP ++ VAQ+A FSQ+E + Sbjct: 16 NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118 + M ++ + A S +GK + D G SG V+ + G ++++ Sbjct: 76 LSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134 Query: 119 TEIPITTGIRIS 130 ++ +S Sbjct: 135 KMYDYSSLYSVS 146 >gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 192 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603] gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621] gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196] gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603] Length = 192 Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S ++ +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQTNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110 S MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + +DN + + R+S+ Sbjct: 145 DVQLVIDNKIVSLRFVERVSD 165 >gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 10987] gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus ATCC 10987] Length = 192 Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens FZB42] gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42] Length = 146 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 4/117 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + MN+T+ + +++ + Sbjct: 27 SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86 Query: 79 -LAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 ++IGKN+T +D + VN+++ S+ + + E+ +S Sbjct: 87 PFTMYVNWIGKNVTFSDSDGKDQTSPVNSVKHSNGNYVLVLENGKEVSPWNVTAVSE 143 >gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1] gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1] Length = 192 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL + +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 284 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 N + L +D+F+ LL+TQ K+QDP PM+ E +AQ+A FS +EQ + Sbjct: 9 NRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSSLEQLM 68 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 +N++++ L + + A+SYIGK +T + +I G V + +T + Sbjct: 69 NLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTI-GKVTDETTKESTITRFRYAPADN 127 Query: 122 PITTGIRISN 131 + I + + Sbjct: 128 TVGGTITVRD 137 >gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046] Length = 231 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 N + + + LG+DAFLK+LITQ+++QDPT PM E ++Q+A FS +EQ M Sbjct: 13 ANNPNFKVTDKQDNGALGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNM 72 Query: 67 NSTLQE---LLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTG 110 ++ + + L ++++GK + + G + ++ + Sbjct: 73 TKAMENLLQSQQQSQLMSYTTFVGKEVKWHEITDKVDADNKPIYNEGIGTIQELKFVNGE 132 Query: 111 LTAITVDNTEIPITTGIRI 129 + D EI I Sbjct: 133 AVFVLADGKEIKPGNISSI 151 >gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila LSv54] gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea psychrophila LSv54] Length = 248 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S T+G+ FL LL+ Q+++QDP P + +E AQLA FS +EQ + +N + ++ S Sbjct: 26 SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85 Query: 77 NNLAQASSY---IGKNITNADGSISGVVNAIQV 106 + + + IGK + I + ++ Sbjct: 86 TSNSDNIALLNTIGKEVLYYGDEIDFQGDPVEF 118 >gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL B-14911] Length = 211 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 16/142 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + + ++ + LG+D FLK+L+ Q+++QDP+ P++ + +AQ+A FS +EQ Sbjct: 7 SSLMLSSYKKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQM 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNAD-------------GSISGVVNAIQVS 107 MN+++Q+L++ +L S + GK I +G V++IQ Sbjct: 67 TNMNTSIQKLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFK 126 Query: 108 STGLTAITVDNTEIPITTGIRI 129 + I D TE+ + Sbjct: 127 NGNAVFILEDGTELGPANISEV 148 >gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7] gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus amyloliquefaciens TA208] gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3] Length = 143 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 70/128 (54%), Gaps = 4/128 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + + S LG+D FLK+L+TQ+++QDP P+ E ++Q+A FS +EQ + +N Sbjct: 13 ASSTKSTAAVNSSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLN 72 Query: 68 STLQELLKSNN-LAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPI 123 +T+ + +++ + ++IGK++T +D + VN+++ S+ + + E+ Sbjct: 73 TTMTKYVENQDPFTMYVNWIGKSVTFSDSDGKDQTSPVNSVKHSNGNYMLVLENGKEVSP 132 Query: 124 TTGIRISN 131 +S Sbjct: 133 WNVTAVSE 140 >gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 190 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684] Length = 152 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N N + ++ + LG+D FLKLLI Q+++QDP P +E + Q+ FS +EQ Sbjct: 7 NPVNNAPATYDNSTRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSILEQI 66 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSSTGLTA 113 + T Q ++ AQA IG+ ++ N DG S +G V ++ +S+G Sbjct: 67 TNLGQTTQAAASNDYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSSGPQL 126 Query: 114 ITVDNTEIPITTGIRIS 130 T I + ++ Sbjct: 127 TIDGRTGILPVSLTKVG 143 >gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas maltophilia K279a] gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas maltophilia K279a] Length = 227 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 11/132 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ T + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYTALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110 +N T QE + S+ + + ++ +G + +G++ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAAPSAGIIT 131 Query: 111 LTAITVDNTEIP 122 + ++ Sbjct: 132 VDITDATGAKVT 143 >gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str. A2012] Length = 190 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAXQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293] gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus H3081.97] gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293] Length = 192 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100 Query: 70 LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 LQ + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063] gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 254 Score = 89.3 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ + Sbjct: 52 NQGQKTDKAAQTKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMI 111 Query: 65 QMNSTLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVD 117 QM ++ ++ AQ ++ +GK + +++ G ++A++ + G + Sbjct: 112 QMTEASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIG 171 Query: 118 NTEIPITTGIRISN 131 ++ ++ + I++ Sbjct: 172 KEKVEMSDILGIAD 185 >gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus AH187] gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus AH187] gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26] Length = 192 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + K+ +G+D FLKL ++ +HQDP M ++ + Q A S MEQ M + Sbjct: 41 SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100 Query: 73 L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + S L ++GK + DG ++G V ++++ + +DN + + Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160 Query: 127 IRISN 131 R+S+ Sbjct: 161 ERVSD 165 >gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis str. Vollum] gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0488] gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis str. CDC 684] Length = 198 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas palustris BisB18] gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 135 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 3/133 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ T S S + ++G + FL+LLI Q+++QDPT P S+ ++Q A S + Sbjct: 3 VDSVNAAQSTANSSSTSSTSASIGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSV 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117 EQ++Q N L LL ++ L+QA IG+ + S +G + A+ + G A + Sbjct: 63 EQAIQTNLKLDALLSTSALSQAEGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDN 122 Query: 118 NTEIPITTGIRIS 130 ++ + GI IS Sbjct: 123 GVQVQLGPGITIS 135 >gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ + + +K K TL Q FL+L+ Q++HQDP +PM ++ VAQ+A S ++ Sbjct: 12 DVYAALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71 Query: 62 QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110 +N T QE + S+ + + ++ +G + +GS+ G V A Sbjct: 72 GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAAPSAGIIT 131 Query: 111 LTAITVDNTEIP 122 + + T++ Sbjct: 132 VDITDANGTKVT 143 >gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium caulinodans ORS 571] gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium caulinodans ORS 571] Length = 138 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 1/109 (0%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + + FL+LL+ Q+K+QDPT+PM ++ ++QLA FSQ+EQ N L LL ++ L A Sbjct: 29 VDYNQFLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSA 88 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLT-AITVDNTEIPITTGIRIS 130 + IGK +T+ADG++SG V ++ + S G A D +++ + + + IS Sbjct: 89 DAAIGKTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSIS 137 >gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2143] Length = 224 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 11/123 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +E++ ++ + K+ LGQD FL+L++TQ+++Q+P +P SE VAQLA FS +E Sbjct: 11 SELSAREKYAPANTEKQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLD 70 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTA 113 ++N+T++ + +SN QAS+ +G+++ ADG ++G + Q + Sbjct: 71 KLNNTMEGFVGSFQSNQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQSTDDLSVI 130 Query: 114 ITV 116 + Sbjct: 131 VYD 133 >gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1] gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131] Length = 223 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Sbjct: 5 VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113 Q+NSTL + L + A A+S IGK++ + +G V + A Sbjct: 65 SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124 Query: 114 ITV 116 + V Sbjct: 125 LVV 127 >gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W] gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W] Length = 190 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + KHQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 NNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM 12680] Length = 171 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%) Query: 1 MEINTEVNPTQQEF-SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M ++ + + + + LG+D F KLLIT++K+QDP EPMK E +AQ+A FS Sbjct: 1 MPVSGVTSSESSTAITSAAKSQILGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSS 60 Query: 60 MEQSVQMNSTLQELLKSNNL-----------AQASSYIGKNITNAD--GSISGVVNAIQV 106 +EQ MN+ LQ L + N +A + +G+ I G+ G V +I V Sbjct: 61 LEQMYNMNTNLQSLSTALNSYVSTLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-V 119 Query: 107 SSTGLTAITVDNTEIPITTGIRI 129 G+ +TV+ ++ + + Sbjct: 120 LKDGVPYLTVNGEQVSLAQVTSV 142 >gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 8/106 (7%) Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P K +L + F+KL ITQ+++QDP +PM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 FS ME +++M+ +++LL S N Q IGKNI A IS Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106 >gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168] Length = 146 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 4/116 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + + LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ M+S +L Sbjct: 31 RTASQQLGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANM 90 Query: 77 NNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 N +A S +GKN+ D ++SGVV ++ I V+ + + Sbjct: 91 LNSNEAVSLLGKNVELNAGDAAVSGVVESVT--RGAAPQIKVNGMLYSMDQINAVY 144 >gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 223 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Sbjct: 5 VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113 Q+NSTL + L + A A+S IGK++ + +G V + A Sbjct: 65 SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124 Query: 114 ITV 116 + V Sbjct: 125 LVV 127 >gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 222 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + Q + S LG+ FL L++ Q+K+QDP P A+E AQLA FS +EQ Sbjct: 9 NAASSNAQLSSALSSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQL 68 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +N L+ + ++ A + IG ++ A A+Q + + Sbjct: 69 FNVNDNLESMGNTSAEVQRLSALALIGTDVVTASSEFEFSGGAVQFGYDLDGPASEGSLY 128 Query: 121 IPITTGIRIS 130 I G ++ Sbjct: 129 IRNAAGDTVA 138 >gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1] Length = 223 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 1 MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M I++ + P +K +L + F+KL ITQ+++QDP EPM + E +QLA Sbjct: 1 MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60 Query: 56 VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 FS ME +++M+ +++LL S N Q IGKNI A IS Sbjct: 61 QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106 >gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis str. Ames] gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis str. Sterne] gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis str. CNEVA-9066] gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis str. A1055] gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis str. Western North America USA6153] gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis str. Kruger B] gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis str. Australia 94] gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI] gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Ames] gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis str. Sterne] gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0193] gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0442] gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0389] gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0465] gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0174] gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis Tsiankovskii-I] gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB108] gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus AH820] gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342] gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42] gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis str. A0248] gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1] gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13] Length = 217 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 13/141 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I++++ + S +G+D FL+LLI Q+++QDP PM+ E +AQ+A FS +EQ Sbjct: 5 ISSDLYIQNRPVETSNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQ 64 Query: 63 SVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI----------SGVVNAIQVSST 109 +N +++ + + N S +G +T + +G V +I + Sbjct: 65 MANLNKSMEGFIDTQNKMNVLSLQQYLGSELTWQHTYMVEDEPFVEMKNGTVASISMQDG 124 Query: 110 GLTAITVDNTEIPITTGIRIS 130 I D +EI + +++ Sbjct: 125 KARLIMDDGSEITVEQITKVN 145 >gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563] Length = 263 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q F + ++ +LG+DAFLKLL Q+ HQDP PM + +AQLA FS +EQ ++N L Sbjct: 27 QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86 Query: 71 QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAIT 115 + + S +GK++ A G V + + TG+ Sbjct: 87 DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134 >gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 133 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 ++ + + +LG + FLK+L+TQ+ +QDP +PM E +AQ+A F+ +EQ+ Q Sbjct: 2 AIDAISGSTATNLQASSLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQ 61 Query: 66 MNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +N+ ++ L+ + Q+ IGK + G+++G V+A+ +S + Sbjct: 62 LNNKIETLITNQAALQSVGLIGKTVDVNTPTGAVTGTVSALSLSGDAPLLTVRTAAGAVL 121 Query: 124 TTG 126 Sbjct: 122 ANI 124 >gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2] Length = 192 Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110 S MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165 >gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876] gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 190 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S S + + +D FLKL + +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTG 110 S MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 145 DVQLIVDNQVVSLRFVERVSD 165 >gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 266 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + LG+DAF+ LLITQ+++QDP PM SE +AQ+A F+ +EQ + + Sbjct: 18 QNKPETREPDQDLGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQMMNVALAT 77 Query: 71 QELLKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + + + Y KN+ T SG V ++ + + + E+ + I++ Sbjct: 78 NKQTALSMVGNFVEYSYKNLETGKTEYSSGKVEYVK-TQGDDALLGIGENEVKLADIIQV 136 Query: 130 SN 131 N Sbjct: 137 LN 138 >gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp. 2_A_57_CT2] Length = 150 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 16/144 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + Q ++ LG+D FLK+L+TQ+++QDP PM+ + +AQ+A FS +EQ Sbjct: 7 SSLMLSNYQSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQM 66 Query: 64 VQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI-------------SGVVNAIQVS 107 MN T+++L+ N L ++++GKN+T + +G V +IQ Sbjct: 67 TNMNKTMEKLVAFQEQNQLMTYNNFLGKNVTWHKLTESSEPNEEPIIEEGTGRVVSIQYK 126 Query: 108 STGLTAITVDNTEIPITTGIRISN 131 + I D T++ +++ Sbjct: 127 NNTAVFILDDGTKLEPANISQLNE 150 >gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus B4264] gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus B4264] gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15] Length = 192 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTG 110 S MEQ M LQ + S L ++GK + ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165 >gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676] gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676] Length = 190 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S K+ + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGLSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228] Length = 168 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 5/131 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T+ + E + LGQDAF KLLITQ+++QDP PM+ E V+Q+A FS +E++ Sbjct: 17 STKNKELETERKSLEGNDGLGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKT 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDN 118 ++ S L++ L SN + S IGK IT + GVV +I+ + A + Sbjct: 77 EKLYSLLEDKLSSNQVINNSHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNG 136 Query: 119 TEIPITTGIRI 129 E+ I +I Sbjct: 137 LEVDINYITQI 147 >gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489] Length = 149 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ MN Sbjct: 26 NKSITIEGRKVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMNQ 85 Query: 69 TLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 ++ +QA IGK + D +GVV A+ + + V+N + Sbjct: 86 EFAKMNSMLVSSQAVGTIGKTVDITLGDTKTTGVVEAVTYGAN--PQVRVNNMYYDMKQI 143 Query: 127 IRIS 130 + Sbjct: 144 SAVY 147 >gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus E33L] gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L] gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 190 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 7/134 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T + ++ LG+D F+KLL+ +K+QDPTEPM ++ + Q + + MEQ + Sbjct: 52 NQGQKTDKAAETKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMI 111 Query: 65 QMNSTLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVD 117 QM ++ ++ AQ ++ +GK + +++ G ++A++ + G + Sbjct: 112 QMTEASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIG 171 Query: 118 NTEIPITTGIRISN 131 ++ ++ + I++ Sbjct: 172 KEKVEMSDILGIAD 185 >gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides] gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N] Length = 223 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + Q +++K K LGQ FL LL TQ+++QDP +PM+ E +AQ+A FS + Sbjct: 5 VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113 Q+NSTL + L + A A+S IGK++ + +G V + A Sbjct: 65 SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124 Query: 114 ITV 116 + V Sbjct: 125 LVV 127 >gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99] gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201] gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 190 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T + K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSANTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma proteobacterium HTCC2207] Length = 228 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 10/130 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T ++E + + + LGQDAFL L Q+++Q+P +PM V+QLA FS +E Sbjct: 12 TSDQYLEKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIK 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M +L + ++ + + ++ +GK + A G+ +G + +T ++D Sbjct: 72 GMQGSLDNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG-------GNGEITKGSIDLDYG 124 Query: 122 PITTGIRISN 131 + + + + Sbjct: 125 AQSVILSVYD 134 >gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3] gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28] gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29] Length = 192 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112 MEQ M + L + S L ++GK + DG ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 147 QLIINNKVVSLRFVERVSD 165 >gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli IE4771] Length = 146 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 57/114 (50%), Positives = 84/114 (73%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 + K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L LL S+ Sbjct: 21 QKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSS 80 Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +L QASSY+GK + +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 81 SLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134 >gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus AH1134] gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W] gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185] gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 192 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110 S MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165 >gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407] gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 192 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110 S MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165 >gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 190 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S S + + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035] Length = 225 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 7/107 (6%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 LGQ FL L+ Q+++QDP PM+ E +AQ+A FS + ++N+TL ++ Sbjct: 26 RTGNGDLGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQ 85 Query: 77 ---NNLAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITV 116 N +A ASS +G+ + SG V+ + +A+TV Sbjct: 86 IGGNRIATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAASAVTV 132 >gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 169 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 TLG+ FL LL+TQ+++QDP +PM+ E VAQLA FS +EQ +N + + L Sbjct: 27 NNTLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE-------L 79 Query: 80 AQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 +A + IG+ + + ++ G V++I+V + V+ E+ +I Sbjct: 80 IKAQNMIGRYVVATNPSDTSKTVEGRVDSIRV-DGSKIYLKVNGVEVTTENIKQIY 134 >gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM 771] Length = 134 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + S + S L ++AFLKL I Q+K+QDP P + + Q+A FS MEQ Sbjct: 6 SGVNGSASTAGSTNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQL 65 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTE 120 + +N+++ +L+ NL +A+S +G+ + ISG V +Q+ I +D Sbjct: 66 MNLNTSITQLIDLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQIRQNAN-KIVIDGES 124 Query: 121 IPITTGIRIS 130 I+ +I Sbjct: 125 YDISQIAQIG 134 >gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1] Length = 218 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M +N+ ++ + +KK L ++AFLKLLITQ+K QDP EPMK + +AQ++ S + Sbjct: 3 MNVNS-MSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSL 61 Query: 61 EQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 EQ + M+ ++Q + + QA S IGK + G+ V Sbjct: 62 EQVMNMSKSVQSFVDTAAQLYRTQAVSMIGKTAVVKTN--------VINVENGVPESKVF 113 Query: 118 NTEIPITTGIRISN 131 N + P I+I + Sbjct: 114 NLDSPANIVIKIFD 127 >gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 134 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 14/134 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ +N + LG+D FL+LL+TQ+++QDP PM E +AQ+A FS +EQ Sbjct: 9 NSYMNTYTDGTKVTNPNSELGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITN------ADGSISGVVNAIQVSSTGLTAITVD 117 +N + + +A S +GK +T + +++G V++++ + L + ++ Sbjct: 69 QNLNESF-------SAVKAYSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNLY-LEIN 120 Query: 118 NTEIPITTGIRISN 131 +++ + + +S+ Sbjct: 121 GSDVSLDSVTSVSD 134 >gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium HdN1] Length = 237 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 10/124 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST- 69 + S KS +D F++L++ Q+KHQ+P +P +E VAQLA FS +E +N + Sbjct: 29 DNKASPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSV 88 Query: 70 --LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + + +S+ QA++ +G+ + +++ ++ + + Sbjct: 89 KDITSMYRSSQTLQATALVGREVLVDG-------DSVAFDGKNAALGVINAGQAASNAVM 141 Query: 128 RISN 131 I + Sbjct: 142 TIKD 145 >gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter desulfuricans SSM1] Length = 221 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 INT + + + + KK L +D FL LL+TQ+K+QDP P+ SE +AQ FS +E Sbjct: 7 NINTVTSIS--NINNREPKKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLE 64 Query: 62 QSVQMNSTLQELL-----KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116 Q + ++ +L+ + NL A S+I K I S + + Sbjct: 65 QLINISEKFDKLIDNEESSNLNLFSAVSFIDKTINFYGNDFS--------ADENGALLRF 116 Query: 117 DNTEIPITTGIRISN 131 D + P TT I I N Sbjct: 117 DISGTPATTNIEIYN 131 >gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al Hakam] gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus 03BB102] gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1] Length = 190 Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T S K+ + +D FLKL + +HQDP M ++ + Q A S MEQ Sbjct: 32 STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK ++N ++G V ++++ + VD Sbjct: 92 QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151 Query: 118 NTEIPITTGIRISN 131 N + + R+S+ Sbjct: 152 NQVVSLRFIERVSD 165 >gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei 1710b] Length = 459 Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 227 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 286 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 287 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 323 >gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC 14579] gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC 14579] gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550] gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24] gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4] gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus thuringiensis BMB171] Length = 190 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Query: 3 INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 +N +P QQ S S + + +D FLKL + +HQDP M ++ + Q A S Sbjct: 27 VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86 Query: 59 QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112 MEQ M LQ + + L ++GK + N ++G V ++++ Sbjct: 87 LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146 Query: 113 AITVDNTEIPITTGIRISN 131 + VDN + + R+S+ Sbjct: 147 QLIVDNQVVSLRFVERVSD 165 >gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus G9842] gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200] gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222] Length = 192 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + +N +P QQ S + +G+D FLKL ++ +HQDP M ++ + Q A Sbjct: 25 VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84 Query: 57 FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110 S MEQ M LQ + S L ++GK + DG ++G V ++++ Sbjct: 85 LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144 Query: 111 LTAITVDNTEIPITTGIRISN 131 + ++N + + R+S+ Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165 >gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT] Length = 274 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 12/117 (10%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 T++ K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ +N Sbjct: 49 GATKRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLN 108 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ST+ + A + +GK + + G + +T + D +I ++ Sbjct: 109 STM-------SFNSAGNMVGKTVALSSYDDYG-----RQYGGTVTNVRKDGDDIILS 153 >gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium japonicum USDA 110] gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110] Length = 140 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + + FL+LL+ ++K+QDPT PM S+ ++Q A S +EQ++Q N+ L LL S +L+QA Sbjct: 28 VDYNTFLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQA 87 Query: 83 SSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IGK ++ + SG V +I ++S G A + T++ + G+ IS Sbjct: 88 DGLIGKTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138 >gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC 17100] Length = 100 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 42/100 (42%), Positives = 68/100 (68%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L+ Q+++QDPT+P ++ ++QLA FS +EQ V NS L LL ++Q +S IGK + Sbjct: 1 MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60 Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 T+ADG+ISG + +I++SS+G A D + I + +G+ IS Sbjct: 61 TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100 >gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ME + KK L +D FL L+ITQ+K+QDP PM +E +AQ S + Sbjct: 5 MESVGSKTLAMLNVKPREPKKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSL 64 Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 EQ + + +++ + L +S+IGKN++ S S Sbjct: 65 EQLINIAKLMEKQNAQSTESQLLSGASFIGKNVSYNGNSFS 105 >gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 231 Score = 86.6 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + ++ + D FLKLL Q++ QDP P ++ VAQLA FSQ+EQ Sbjct: 15 TNLAASGAPTAQLPGAGSPDFDRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQT 74 Query: 65 QMNSTLQ----ELLKSNNLAQASSYIGKNITNADGSIS 98 + N+ LQ L +LA+ ++ +GK + ++S Sbjct: 75 KTNALLQGIAETLSGQASLAENAALLGKAVRTQSETVS 112 >gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix] Length = 223 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ LGQ FLKL+ TQ+++QDP EPM+ E + Q+A FS + +++ + Sbjct: 15 SRQQKDEGPADRLGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSF 74 Query: 71 QELLKSN---NLAQASSYIGKNITNA--------DGSISGVVN 102 ++L +S QA+S +GK++ DG + G V Sbjct: 75 EKLAQSMGQSQTLQAASLVGKDVLVPTDFSELGTDGMVRGAVE 117 >gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068] Length = 145 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T K KS + LG D FL+L+IT++ +QDP PM ++ V Q+ ++ + Sbjct: 9 STSGAGATTNSDKPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASN 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTG------LTAI 114 +++ TL +L +L AS IG+ +T D ++ G+V+ + + + Sbjct: 69 DKLSRTLDSVLTGQSLTTASGLIGREVTALDLNNENVEGIVDRVSIEVDEDDATKRTYKV 128 Query: 115 TVDNTEIPITTGIRISN 131 + + EI + I Sbjct: 129 HIGDKEIDLKNIREIKE 145 >gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM 8271] Length = 144 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S + K LG++ FL+LL+ Q+K+QDP PM ++ V+Q+A FS +EQ Sbjct: 11 GTTGSGGSDTVTSTASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMT 70 Query: 65 QMNS---TLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITV 116 + TL L + L Q S+ IGK GS +G VN+I++ + + V Sbjct: 71 NVADAIVTLTSLYSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRI-QDNVLQVQV 129 Query: 117 DNTEIPITTGIRISN 131 D+ + + +++S Sbjct: 130 DDQWVDLGNILQVSE 144 >gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine bacterium MedDCM-OCT-S09-C247] Length = 230 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + T+Q ++ +K TLGQ FLKL+ TQ+++QDP PM + +AQ+A FS + ++ Sbjct: 17 LGITRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEV 76 Query: 67 NSTLQELL---KSNNLAQASSYIGKNITNADG 95 N+++ +L+ +A AS+ +G ++ Sbjct: 77 NNSIGQLVDEFDQARIATASNLLGHSVLVPGN 108 >gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15] gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15] Length = 218 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + +D FLKL +TQ++HQDP P +SE + QLA +Q+EQ Sbjct: 2 VNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQ 61 Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 + NS L +++ N + SYIGK++T I Sbjct: 62 AYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQI 99 >gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 180 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 13/133 (9%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N Q S + K L ++AFLKLL+T++K+QDP EP+K E ++Q+A FS +EQ +N Sbjct: 16 NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75 Query: 68 STLQELLKSNN--------LAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAIT 115 S+ +L + N + Q+S+ +G+ + ++ S +G+++++ G+ Sbjct: 76 SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSVVFRE-GIPYYV 134 Query: 116 VDNTEIPITTGIR 128 +D+ EI + R Sbjct: 135 IDDKEITMNNISR 147 >gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium profundum SS9] gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium profundum SS9] Length = 238 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN Sbjct: 27 QDTQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAI 114 L + S+ QASS +G+++ G I+G+V Q + I Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMVKLPQALDNMMVRI 141 >gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus denitrificans ATCC 25259] gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + SKS + QD FL LL+ Q+K+QDP P+ +E +Q+A S +E MN +L Sbjct: 16 AEAAKTSKSGSSDTQDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSL 75 Query: 71 QELLKSN---NLAQASSYIGKNITNADGSI 97 + L S ++QA++ IG + ++ Sbjct: 76 EALASSMGASQMSQAANLIGHAVLVPGNAV 105 >gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53] Length = 233 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 +++ + + + K+ LGQ FLKL+ Q+++QDP PM + +AQ+A FS + Sbjct: 16 SKLGISTTQDKNAVPKEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75 Query: 65 QMNSTLQELLKSN---NLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTA 113 +M+ T+ + +A + +Y+G ++ G I G + + S Sbjct: 76 KMSETMSGIADQMGQFRVASSVNYLGHSVMIPGNLARADDNGEIHGAIELERASVDTRIE 135 Query: 114 ITV 116 Sbjct: 136 FLD 138 >gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium BAC17H8] Length = 231 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + ++E + SK TLGQ FLKL+ TQ+++QDP PM+ +E +AQ+A FS + +M Sbjct: 19 LGVPKKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEM 78 Query: 67 NSTLQELLKS---NNLAQASSYIGKNITNAD--------GSISGVVNAIQVSS 108 + L+ + + +A A++ +G ++ G I G++ S Sbjct: 79 GTELKAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIELPSASG 131 >gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct] Length = 238 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N Sbjct: 25 SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84 Query: 68 STLQELL---KSNNLAQASSYIGKNITNADGS 96 +++ +L +S+ QASS +G+ + A Sbjct: 85 KSMESILSNYQSSQALQASSLVGRKVIVATDK 116 >gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 247 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + SK +LGQ FL LL+ Q+ HQDP PM+ ++ +QLA FS +EQ ++N +Q Sbjct: 19 AASNTPTSKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQ 78 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSIS 98 L + ++L A+SYIGK+I IS Sbjct: 79 SLNTVMGKSDLLSAASYIGKDIKAEGYKIS 108 >gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii LLAP12] Length = 123 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 ++ + +GQ ++K+ + ++ +QDP +P+ E +AQ+A FS ++Q+ N L +L+ Sbjct: 2 TEPVNGVDVGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLI 61 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV---DNTE--IPITTGIRI 129 + + + S +G ++ G+V AI+ + + + + + E + + + Sbjct: 62 QLHYGNRGLSLLGHSVKITGEEGYGLVEAIRFTEEQMPEVRIQRENGGEPWVDVNHIYEV 121 >gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 236 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 2 EINTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 I + S KSK L Q FL LL+ Q++HQDP PM+ + AQLA FS + Sbjct: 6 NITGSSSAIDPYASTPKSKSGALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSL 65 Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVS 107 EQ ++N ++ L S ++ A S+IGK+I ++S +I + Sbjct: 66 EQLNKINEGIEGLNSSAGRQDMLGAVSFIGKDIRAFGNTVSKEGTSITKA 115 >gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium profundum 3TCK] Length = 238 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 11/115 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q+ SK + L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ QMN Sbjct: 27 QETQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAI 114 L + S+ QASS +G+++ G I+G+V Q + I Sbjct: 87 GSLNSAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMVKLPQALDNMMVRI 141 >gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter lacuscaerulensis ITI-1157] Length = 221 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 Q K S + FLK+L Q ++QDP EP+ +SE AQLA FS +EQ VQ N Sbjct: 15 NQSATQKKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNEL 74 Query: 70 LQEL---LKSNNLAQASSYIGKNITNAD 94 L L L + NL + +++IGK++ + Sbjct: 75 LDGLAGTLSAANLTEMAAWIGKDVRVSS 102 >gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1] gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1] Length = 155 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + K TL Q+ FLKLL Q + QDP PM+ +E +AQ+A F+ ++QS + + Sbjct: 20 NSGTNTPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQ 79 Query: 70 LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 +++ + A A+SYIG+ +T AD + +GVV+ ++++ G + V + ++ Sbjct: 80 MKQFSTMQDAATANSYIGRQVTFADENGATATGVVSGVEIT-DGAPRLVVGDLTYALSAV 138 Query: 127 IRI 129 + Sbjct: 139 RLV 141 >gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 136 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + T+G + FL++ +TQ+ QDP EP+ E +AQLA FS +E + + N ++ LL + Sbjct: 17 KQNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQS 76 Query: 79 LAQASSYIGKNITNAD--GSISGVVNAIQVSST--GLTAITVDNTEI 121 +AQ IGK + D G G V+ I ++ +T + D T I Sbjct: 77 VAQTVGLIGKTVQVNDDQGFAVGKVSTITFNNGKPEITLVQEDGTPI 123 >gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi DSS-3] gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3] Length = 222 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + Q + K + D F+++L TQ K+Q+P EP+ +SE AQLA FS +EQ Sbjct: 11 GATSQAPQTTTPEKRSLSSDFDTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQT 70 Query: 65 QMNSTLQELLK---SNNLAQASSYIGKNITN 92 + N TL L++ + ++A+ S++IGK + Sbjct: 71 KTNDTLTALVEKLGATDMAKLSNWIGKEVRA 101 >gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str. Eklund] Length = 274 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + T++ K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 44 VNHYNSATRRGTKIVKKGNEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 103 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 +NST+ + A S +GK + + G + +T + D +I Sbjct: 104 MANLNSTM-------SFNSAGSMVGKTVAMSSYDDYG-----RQYGGTVTNVRKDGDDII 151 Query: 123 IT 124 + Sbjct: 152 LN 153 >gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas arsenicoxydans] gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas arsenicoxydans] Length = 225 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + KS QD FL LL+TQ+K+QDP P+ ++ +QLA S + ++N TL Sbjct: 20 NGTSAAKKSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTL 79 Query: 71 QELL---KSNNLAQASSYIGKNITNADGSIS 98 + ++ +SN QA++ IG + +IS Sbjct: 80 ESMMGSYQSNQALQAANMIGHGVLAPGSNIS 110 >gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus TCF52B] Length = 222 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 11/124 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K + KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ ++ Sbjct: 14 STNSKKQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESV 73 Query: 71 QELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 Q+ ++S+ QASS +GK + S G T+ V E P + Sbjct: 74 QKFVESSASLYRAQASSMVGKYAVVKSN--------VLELSNGTTSTQVFKLESPSHVIL 125 Query: 128 RISN 131 +I + Sbjct: 126 KIYD 129 >gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319] Length = 142 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ Sbjct: 7 SDLYLSNRDTPVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQM 66 Query: 64 VQMNSTLQELLKSNNL---AQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117 M+++L L + + S IGK GV+ V + ++ D Sbjct: 67 TNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVILTASVKNNEVSFGIND 126 Query: 118 N--TEIPITTGIRISN 131 T + + + +S+ Sbjct: 127 ENHTVLSLNDILEVSS 142 >gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035] gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035] Length = 230 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 + + + + FL+LL TQ+++QDP P+++S+ QLA FS +EQ V N L +L Sbjct: 29 RPATGFSSDFETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGA 88 Query: 74 -LKSNNLAQASSYIGKNITNAD------------GSISGVVNAIQVSSTGLTAITVDNTE 120 L + L+Q S +IG ++ +A ++ ++ I V+ Sbjct: 89 RLGAQGLSQVSGWIGMEALATGPVAFSGQPISLIATVESQADAAEIVASDARGIIVNRQT 148 Query: 121 IPITTGIRI 129 IP +G + Sbjct: 149 IPARSGPVV 157 >gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 221 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + V + ++ K LG++ FL LL+ Q+ +Q+P EP E +AQLA FS +E Sbjct: 7 TSSVLDQYEMKQNTRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGI 66 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAI 114 ++N +++ +L +S+ QASS +G+ + D S S +A+ S+G + Sbjct: 67 EKLNKSMESMLSSYQSSQALQASSLVGRKVIVPTERAVVDTSESFKASAVLPVSSGNVYV 126 Query: 115 TVDNTEIPITTGI 127 V ++ + T I Sbjct: 127 NVYDSAGSVVTRI 139 >gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199] gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199] Length = 222 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M+ + ++ + + S S K + D FL LL TQ+K+QDP +PM SE V QL FS + Sbjct: 1 MDSVSPISTSGTKSSTSADKLSKDFDMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNV 60 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 EQ + N L+++ L S + A + SYIG+++ D + Sbjct: 61 EQQIAQNKNLEQMILLLNSQSAASSVSYIGRDVQFTDSTT 100 >gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola ATCC 35405] gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC 33520] gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema denticola] gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola ATCC 35405] gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402] Length = 169 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ MN Sbjct: 44 NKQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNK 103 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 L + + A + +GK + GS +SG ++A + V+ + Sbjct: 104 NFAALNELMTGSSAVNAVGKKVDLDLGSSQVSGYISAATRGIN--PEVMVNGNWYNWSAV 161 Query: 127 IRIS 130 + Sbjct: 162 KTVY 165 >gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216] Length = 175 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N T S + +K +D FLKLL+ Q+K+QDP++P ++ +AQ A FS +E + Sbjct: 30 NANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQE 89 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSS------TGLTAITV 116 + ++ +L + N QAS+ IG+ ++ SGVV + + G + V Sbjct: 90 VAASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVVKSASFTQGSAGGTNGEPVLNV 149 Query: 117 DNTEIPITTGIRISN 131 D T + ++ I Sbjct: 150 DGTSVVLSRVSGIGE 164 >gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776] Length = 139 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 L +AF+KLLITQ+++QDP+ PM E ++Q++ + +++ L+ L S L Sbjct: 25 NALDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLN 84 Query: 81 QASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +++++GK I T +SGVV+ + V + + V + E+P+T ++N Sbjct: 85 SSTAFLGKEIKGTTANGTEVSGVVDRVYVK-DKASFLVVGDKEVPLTNVTDVTN 137 >gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1] gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1] Length = 215 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 7/138 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + ++ S KTL +DAFLK+LI Q+++QDPT+PM ++ V+Q+A FS + Sbjct: 7 IDPSLLLSNQNTATSTRTGSKTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSL 66 Query: 61 EQSVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113 EQ + + + L+K + +Q + YIG+ ++ + V + + TG++ Sbjct: 67 EQMTNLKNDIDNLIKLSQQSQQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISF 126 Query: 114 ITVDNTEIPITTGIRISN 131 + + G +IS+ Sbjct: 127 GDDNAVTFTLDDGTKISS 144 >gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium 197N] gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N] Length = 230 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + + S + QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E Sbjct: 7 TSNAKTPEVGNASANAAKSIQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 66 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 +N TL + + A++ IGK + +S Sbjct: 67 NLNKTLLSISGQIDVSQSMNAAALIGKAVLVPGDKVS 103 >gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PA7] gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PA7] Length = 227 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 7/102 (6%) Query: 2 EINTEVNPTQQEFSKS----KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 +N+ + +++ K LG+D FLKLL+ Q+K+QDP P + E +AQLA F Sbjct: 5 NVNSTNRASGSGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQF 64 Query: 58 SQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96 S +E +N +++ +L +S+ QASS +G+ + A Sbjct: 65 STVEGVQSLNKSMESILSNYQSSQALQASSLVGRKVIVATDK 106 >gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429] Length = 221 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ KK L ++AFL+LL+TQ+K+QDP EP+K E +AQ+ S +EQ M+ Sbjct: 11 YPTNVTRENGIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSE 70 Query: 69 TLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 ++Q+ ++S+ Q SS +GK I G + V E P Sbjct: 71 SVQKFVESSASLYRAQVSSMVGKYAVVKSN--------ILELKNGNASTQVFKLEEPSHV 122 Query: 126 GIRISN 131 ++I + Sbjct: 123 ILKIYD 128 >gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia stuttgartiensis] Length = 137 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 11/121 (9%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------ 73 + D+FL L TQ+++QDP +P SE ++QLA F+ +EQ+ Q L +L Sbjct: 10 GSEITTDSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTA 69 Query: 74 -LKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 L+ + + AS +IGK IT +D G SGVV +++ G + +D + I+ I+ Sbjct: 70 SLQLDQIGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQ 129 Query: 129 I 129 + Sbjct: 130 V 130 >gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4] Length = 226 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K LG + FLKL+ TQ+ HQDP EPM S + Q+A F + + ++ +EL Sbjct: 23 KKPQNTELGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTVSGIQDLQNSFKELSG 82 Query: 74 -LKSNNLAQASSYIGKNITNADG 95 ++SN QAS +G+++ Sbjct: 83 SMQSNQALQASGLVGRSVLVPSE 105 >gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 263 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 L + AFL LL+ Q+ HQDP PM E VAQLA F+ +EQ +++ + Sbjct: 15 NNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNISTGI 74 Query: 71 QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +L S ++ A YIGK +T + IS Q STG T +V + + TT Sbjct: 75 TDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYFTTQE 129 Query: 128 RISN 131 ++SN Sbjct: 130 QVSN 133 >gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola batsensis HTCC2597] Length = 221 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++I T + + + L +FLKLL Q+ +QDP EPM +S V+QLA S Sbjct: 2 VDITGTAAATSGQTLSTVASNKLSADYQSFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLS 61 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTG 110 Q+EQS+Q N+ L+ + L + L IG+ ++ G + ++ Sbjct: 62 QVEQSIQTNTHLESISGQLANAGLTSDLGLIGREVSVPGDLFDLIGGKGTFEYVLATTAN 121 Query: 111 LTAITV 116 + Sbjct: 122 EVRAII 127 >gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551] Length = 142 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 8/137 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ ++ K +LG+D FLKLLI Q+++QDP PM+ + +AQ+A FS +EQ Sbjct: 6 MSDLYLSNRETQVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQ 65 Query: 63 SVQMNSTLQELLKSNNL---AQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITV 116 M+++L L + + S IGK GV++ V + ++ Sbjct: 66 MTNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVISTASVKNNEVSFRIN 125 Query: 117 DN--TEIPITTGIRISN 131 D T + + + +S+ Sbjct: 126 DENHTVLSLNDILEVSS 142 >gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus degradans 2-40] gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40] Length = 238 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E ++N+ Sbjct: 16 SIAKKNPTEPQSNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLNN 75 Query: 69 TLQELLKS---NNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVD 117 S N QAS+ +G+++T A G +S V+ S L I+ + Sbjct: 76 NFDSFANSFVANQALQASTLVGRSVTVPSDRTELKAGGVVSASVDVPSSSGDILVNISTE 135 Query: 118 NTEI 121 + Sbjct: 136 GGSL 139 >gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus iheyensis HTE831] gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831] Length = 172 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 12/133 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + LG+D FLKLL+ Q+++QDPT+PM S+ ++Q+A FS +EQ + M++++ Sbjct: 11 NNQQKARVPSQELGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI 70 Query: 71 QELLKSNN---LAQASSYIGKNITN---------ADGSISGVVNAIQVSSTGLTAITVDN 118 + L+ ++ + Q S IG+ ++ G + +V + + + Sbjct: 71 EMLVNNSLVSPVLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENG 130 Query: 119 TEIPITTGIRISN 131 I T I++ Sbjct: 131 ERIYADTVIQVGE 143 >gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2] gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2] Length = 177 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107 Q + +++ L L +L AS IGK + T A SG+V++I V Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEPGKKDSITGETGAGTVKSGIVDSI-VI 128 Query: 108 STGLTAITVDNTEIPITTGIRIS 130 G+ + E+ + +S Sbjct: 129 RDGVQYAKMGAAEVALKDVTSVS 151 >gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65] gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65] Length = 262 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + ++ +Q+ LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E Sbjct: 11 SQVLDQYKQKDDDKPKDNELGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGL 70 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N+T+ + L+S+ QASS +G+++ + Sbjct: 71 ENLNTTVDSMSDGLRSSQALQASSLVGQSVIVPNQEY 107 >gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2] Length = 182 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + K K LG+DAFL+LL+TQ+K+QDP +P + + Q+A F+ +EQ + Sbjct: 12 NYSTSNVKAAGKDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLM 71 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGV-------VNAIQVSSTGLTAITVD 117 M+ L L + NL ASS IGK ++ + +G VN+I L A D Sbjct: 72 NMSDQLS--LLNQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFAD 129 Query: 118 NTEIPITTGIRISN 131 T I ++ + +S+ Sbjct: 130 ETMIKLSDVVTVSD 143 >gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.] Length = 113 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79 +G+D FL LL+TQ+K+QDP PM+ E AQLA FS +EQ MN+TL + S Sbjct: 1 MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 YIGKNI +D +G V + G+ + V +I + I+ Sbjct: 61 DNLLDYIGKNIKTSDDE-TGEVTGVTY-QNGIGYLMVGENKILPDNVVEIT 109 >gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185] Length = 178 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 26/147 (17%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + ++ +LG+DAFL+LL+TQ++HQDP P ++ +AQLA FS +EQ QM Sbjct: 23 ASQTKTARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGF 82 Query: 71 QELL-------KSNNLAQASSYIGKNITN---------------ADGSISGVVNAIQVSS 108 + + S + S+ IGKNI + +G V ++VS+ Sbjct: 83 ENVSKLVSNIDSSVLVGSLSNMIGKNIQWTHVTKTKDAEGNPKTKSETFAGNVRGVKVSN 142 Query: 109 TGLTAITVDNT----EIPITTGIRISN 131 + D E+ ++ I++ Sbjct: 143 GKPMVVAQDAKGKLHEVEVSEIDAIAD 169 >gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1] Length = 128 Score = 84.7 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 8/132 (6%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M I + L +D FLKLL+TQ+++QDP EPM +E +AQLA FS + Sbjct: 1 MSIINTDYYYTANQEQKLGTTNLDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSL 60 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT- 119 EQ +N + L + + + + + + G + I + I + Sbjct: 61 EQMQNLNIQMASLSAISTIGKTAKAV-----VEQNEVEGTIKGIAFDRGSVNLIISNEDS 115 Query: 120 --EIPITTGIRI 129 ++PI I Sbjct: 116 EVKVPIENVAEI 127 >gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 233 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%) Query: 1 MEINTEVNPTQQ-----------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE 49 M++N+ Q E ++ K LGQ FLKL+ Q+++QDP PM + Sbjct: 1 MDVNSNSQSAQNALLSKLGISTTEERNAEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGD 60 Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 VAQ+A FS + +MN T+ + + +A + + +G ++ + Sbjct: 61 FVAQMAQFSSVAGISEMNQTMSSIAGQMSQFQVASSVNMLGHSVMMPGNI-------ARA 113 Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131 + G T+D + T I + Sbjct: 114 DNNGEIQGTLDLASASLDTQIEFLD 138 >gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAO1] gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2] gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa LESB58] gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa PAO1] gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa C3719] gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 2192] gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa LESB58] gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa 39016] Length = 237 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N Sbjct: 25 SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84 Query: 68 STLQELL---KSNNLAQASSYIGKNITNADGS 96 +++ +L +S+ QASS +G+ + A Sbjct: 85 KSMESILSNYQSSQALQASSLVGRKVIVATDK 116 >gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624] Length = 237 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN+ VN + S + QD FLKLL+ QI +QDP PM ++ +Q+A + + Sbjct: 10 INSLVNKGTTTTTSSSTDSAEMQDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTG 69 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +N T++ L S + Q ++ +G+ + AD ++S ++ + D Sbjct: 70 IENLNQTVKNLGNQFTSMQVLQGTALVGREVMVADTTLS-------INEGTRPSTAEDAE 122 Query: 120 EIPITTG 126 E T Sbjct: 123 EGDTETI 129 >gi|119714999|ref|YP_921964.1| flagellar hook capping protein [Nocardioides sp. JS614] gi|119535660|gb|ABL80277.1| flagellar hook capping protein [Nocardioides sp. JS614] Length = 163 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 T + + + ++ FL L++ Q+++ DP P + E +AQ A F+ +E+ Sbjct: 9 VTPSTGMYQPSTATSASDDKEMFLNLMVAQLRYHDPMNPADSGEFLAQNAQFTALEKMQD 68 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + LL + AS +G+ +T ++SG+V ++ + G + VD + Sbjct: 69 VADQTAALLATQISFGASGLVGRYVTYLDQDGAAVSGLVGSVTYDANG-PMLVVDGQNVT 127 Query: 123 ITTGIRIS 130 + ++ Sbjct: 128 LGQVQAVN 135 >gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM 16841] Length = 224 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 16/124 (12%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K K LG D FL++L ++++QDP EP +E +AQLA FSQ+E + + ST++ Sbjct: 29 KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE---- 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + A+ +GK + T I+G + + + G T ++V++ + Sbjct: 85 ---ASSANDLVGKYVIMKVTSSTTGETSYIAGTCDYV-LHKNGETFLSVNDGLYNLKDLD 140 Query: 128 RISN 131 +++ Sbjct: 141 TVAD 144 >gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides KD131] gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N] gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131] gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N] Length = 222 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102 >gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] Length = 248 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 K + L Q+ FL LL Q+ +QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 31 TGEKVTGQTDLKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGS 90 Query: 73 L---LKSNNLAQASSYIGKNITNADGS--------ISGVVNAIQVSSTGLTAI 114 L + S+ QASS +G+++ I+G+V Q + + I Sbjct: 91 LNAAMTSSQALQASSLVGQDVLVPGNEGFKSVEGGIAGMVKLPQALNDVIVRI 143 >gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36] gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36] Length = 218 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 IN + S+ + LG ++ FL++++ QIK+QDP +P+ +E V+QLA FS +E Sbjct: 4 INNSNRTNPAQTSEVTANSALGLKNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMVE 63 Query: 62 QSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 + S+ E+L + + Q+++ IG + +G+ +G+ + Sbjct: 64 GVEGLRAGQSSQAEMLYTQQVLQSTALIGTTVLVPS---TGIAAKQGEKPSGVIRLDGAA 120 Query: 119 TEIPIT 124 E+ +T Sbjct: 121 DEVTLT 126 >gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681] gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681] Length = 177 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + N + + +K KT+G+D FLK+LITQ+++QDP +P++ E +AQ+A FS +E Sbjct: 12 NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107 Q + +++ L L +L AS IGK + T A SG+V++I V Sbjct: 72 QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEAGKKDSITGETGAGAVKSGIVDSI-VI 128 Query: 108 STGLTAITVDNTEIPITTGIRIS 130 G+ + E+ + +S Sbjct: 129 RDGVQYAKMGAAEVALKDVTSVS 151 >gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile QCD-63q42] Length = 202 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + D +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis S4] gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4] Length = 151 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 77/109 (70%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 + ++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++ L +A Sbjct: 41 MDYNSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRA 100 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +GK +T++DG +GVV+ ++V+ +T T + + TG+ S+ Sbjct: 101 GDIVGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149 >gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp. 3_1_syn3] Length = 282 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + N + + +D+F+ LL+TQ K+QDP PM+ E +AQLA FS +EQ + Sbjct: 9 NQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSSLEQLM 68 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N++++ L + + A+SYIGKN++ + +I Sbjct: 69 NLNTSMEGLTDATNNQQMINATSYIGKNVSVSGNAI 104 >gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas aeruginosa PAb1] gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas aeruginosa UCBPP-PA14] Length = 237 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + K LG+D FLKLL+ Q+K+QDP P + E +AQLA FS +E +N Sbjct: 25 SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84 Query: 68 STLQELL---KSNNLAQASSYIGKNITNADGS 96 +++ +L +S+ QASS +G+ + A Sbjct: 85 KSMESILSNYQSSQALQASSLVGRKVIVATDK 116 >gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum rubarum] Length = 276 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85 Query: 75 --KSNNLAQASSYIGKNITNADGSI----SGVVN 102 N ++G+ +T + SG V+ Sbjct: 86 DGADANKMMMVGFLGQRVTMKGNAFRLAPSGNVS 119 >gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782] Length = 286 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 16/132 (12%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 +Q + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ MN Sbjct: 20 TKNKQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMN 79 Query: 68 STLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 ++ + +QA + IGK IT S+ G V ++++ G T + V+N Sbjct: 80 GSMTK-------SQAFTLIGKVITATTTDDKTLEVNSVQGTVTSVKMK-DGKTFVVVNNK 131 Query: 120 EIPITTGIRISN 131 ++ + ++ + Sbjct: 132 DVDVDRITQVDD 143 >gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio japonicus Ueda107] Length = 231 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + ++ LGQ AFL+L+I Q+ +Q+P P +E VAQLA FS +E ++N Sbjct: 15 SITKRQETKRNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNK 74 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 + + SNN QASS +G++++ + + S G+ A +V T +R Sbjct: 75 SFNSFM-SNNALQASSLVGRSVSVESDKST-------LYSGGIVAGSVTLDYATTDTQMR 126 Query: 129 ISN 131 I + Sbjct: 127 IYD 129 >gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 135 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 14/134 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ +N + LG++ +L+LL+TQ+++QDP PM E +AQ+A FS +EQ Sbjct: 9 NSYINTYTDGTKVTNPNSELGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITN------ADGSISGVVNAIQVSSTGLTAITVD 117 + +N++ N +A S +GK I+ + +I+G V+A++ + V Sbjct: 69 LNLNNSF-------NAVKAYSLLGKTISANIDSNGSSSTITGKVDAVKF-DGSNYYLEVQ 120 Query: 118 NTEIPITTGIRISN 131 + + + + +S+ Sbjct: 121 GSNVSLDSVTSVSD 134 >gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides 2.4.1] gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1] Length = 222 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGEASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102 >gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter sphaeroides ATCC 17029] gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029] Length = 222 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54 M + ++S+ + + + FL++L TQ+++QDP PM++ + QL Sbjct: 1 MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60 Query: 55 AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93 A FS +EQ V+ N L + S L++ + +IG+ Sbjct: 61 ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102 >gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 135 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + L + L++++TQ+ +QDP +P+ E V+QLA F+ +EQS Q+ + + Sbjct: 10 AGNGRQADPSGLDLQSLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKID 69 Query: 72 ELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAIT--VDNTEIPITTGI 127 +LL + Q +G+ + G+++G+V + + + T Sbjct: 70 DLLSVQSATQTIGLLGRKVDIRGDAGTMTGIVKGVSFKDGEPKLTIESENGQFLADATVS 129 Query: 128 RI 129 +I Sbjct: 130 QI 131 >gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM 13965] Length = 154 Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 S L DAF +LL Q+++QDP +PM+ + VAQLA +Q+E++ + + L L Sbjct: 27 SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85 Query: 75 KSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 A +G+ + T A G+ +G V +++ + +D + Sbjct: 86 ------SALPLLGRTVEITTAQGTRTGTVTGVRMDP-AAPGLMIDGRPVAWADV 132 >gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM 13855] gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8] Length = 260 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 14/123 (11%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--- 72 + LG++ FLKLL TQ+++QDP+ PMK + AQLA FS +EQ ++ ++E Sbjct: 54 SQATSANLGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGK 113 Query: 73 ----LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 L +S N + A+ IG+ + + ++ Q + G VD + Sbjct: 114 SDGALAQSINDSMATDLIGRTVKTSGNTL-------QWTGEGEATFGVDLERPASEATVT 166 Query: 129 ISN 131 I + Sbjct: 167 IRD 169 >gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp. Group II '5-way CG'] Length = 276 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74 ++ LG FL L+I+Q+++QDP P+ + AQLA FSQ++Q +N + + Sbjct: 26 APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85 Query: 75 --KSNNLAQASSYIGKNITNADGSI----SGVVN 102 N ++G+ +T + SG V+ Sbjct: 86 DGADANKMMMVGFLGQRVTMKGNAFRLDPSGNVS 119 >gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans AK-01] gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum alkenivorans AK-01] Length = 230 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + + + LGQ+ FL+LLI Q+K+QDP PM+ ++ AQLA FS + Sbjct: 5 INTWSVGAGAYSNPTTESTGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSL 64 Query: 61 EQSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98 EQ + +L+E+L + +GK I D S++ Sbjct: 65 EQLFGIGDSLEEMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105 >gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 147 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 55/128 (42%), Positives = 88/128 (68%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + T + ++ K TL D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ+ Sbjct: 8 SVTSAGTTSTTNSAQQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQT 67 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 +Q N+ L LL S++L QASSY+GK + +ADG++ G + +++V S G+ A T + +I + Sbjct: 68 IQTNTKLDTLLSSSSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILV 127 Query: 124 TTGIRISN 131 GI +++ Sbjct: 128 QAGITVAD 135 >gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10] gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10] Length = 285 Score = 83.9 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 16/134 (11%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E ++QE + K+ LG++ FL LL+TQ+++QDP +P+ E +AQ+A FS +EQ Sbjct: 18 ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVD 117 MN ++ + +QA + IGK IT S+ G V ++++ G T + V+ Sbjct: 78 MNGSMTK-------SQAFNLIGKVITATTTDDKTLEVNSVQGTVTSVKMKE-GKTFVVVN 129 Query: 118 NTEIPITTGIRISN 131 N ++ + + ++ + Sbjct: 130 NKDVDVDSITQVDD 143 >gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2] Length = 251 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 Q + +L + F+ L ITQ++HQDP +PM++ E +QLA FS ME ++QM+ Sbjct: 15 ANQSNHPEPVGSSSLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSD 74 Query: 69 TLQELLK---SNNLAQASSYIGKNITNADGSI 97 +++LL S N Q S IGK I I Sbjct: 75 NMEKLLSYQMSQNNLQLLSLIGKTIETDGNEI 106 >gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3] Length = 233 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T K+ S + +G D FL L++ Q+++QDP++PM + + QLA F + ++N+ Sbjct: 14 STPLGNEKAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNA 73 Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADG 95 L L QA++ +G+++ Sbjct: 74 GFSGLSNALSGGQALQAAALVGRSVVTDSN 103 >gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp. TrichCH4B] Length = 231 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V Sbjct: 13 TATGGAAAGKQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQV 72 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNA 93 N TL +L + +N++Q + ++GK + Sbjct: 73 LTNETLTSMLTALSLSNMSQLTGWVGKEVRAQ 104 >gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT 894] Length = 112 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 51/98 (52%), Positives = 73/98 (74%) Query: 34 TQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93 Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L LL S++L QASSY+GK + +A Sbjct: 1 AQMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESA 60 Query: 94 DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 DG++ G + +++V S G+ A T D I + GI +++ Sbjct: 61 DGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98 >gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD100] Length = 334 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 ++ +L +DAF KL++TQ+K+QDPT P+K+ E AQLA FS +EQ MN +L E+ Sbjct: 61 RAVGNPSLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKN 120 Query: 76 SN---NLAQASSYIGKNITNADGSI 97 QA + IGK + + Sbjct: 121 GQKPSENFQALNLIGKAVAGDSSKV 145 >gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707] gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] Length = 226 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 11/101 (10%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K LG + FLKL+ Q+ +QDP EPM S ++Q+A F ++ + ++ QE+ Sbjct: 23 KKAQNTELGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSG 82 Query: 74 -LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQ 105 L+SN QAS +G+++ A GSI G V Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAESSLEAGGSIRGAVELPS 123 >gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 145 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + QQ + +++ LGQD F+K+L TQ++HQDP +PM E + Q+ F+Q++Q Sbjct: 13 SVSEGQQQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQLQ 72 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121 +N T + + +G+++ + I G V AI+ G +D ++ Sbjct: 73 SLNET-------QEQSSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKV 124 Query: 122 PITTGIRI 129 + I Sbjct: 125 DFEDVVEI 132 >gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 3502] gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A str. ATCC 3502] gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC 19397] gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall] gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch Maree] Length = 265 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 40 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 99 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L ASS+IGK + +G+V + + + E Sbjct: 100 MK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEVKLSIEYAPGKVGE 152 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 153 FAMEDVLNITD 163 >gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2] Length = 144 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 3/130 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + S + TLGQ F KLL Q++ QDP P+ ++ +AQLA FS + QS Sbjct: 9 TSATQEASASNSSTSITSTLGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQS 68 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + + + L + A+ +GK +T + ++G V +I S + + +T Sbjct: 69 EALVTQMGYLRADIQMQAAAGLVGKEVTVVSDGELVTGTVTSIAADSD-AVYVKIGDTYY 127 Query: 122 PITTGIRISN 131 ++ + ++ Sbjct: 128 TYSSVVEVAE 137 >gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf] gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657] Length = 265 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 16/135 (11%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ Sbjct: 36 TATETARGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMAN 95 Query: 66 MNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN-- 118 +NS ++ L ASS+IGK + +G+V + + + Sbjct: 96 LNSMMK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEVKLSIEYAPG 148 Query: 119 --TEIPITTGIRISN 131 E + + I++ Sbjct: 149 KVGEFAMEDVLNITD 163 >gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297] gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297] Length = 248 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 2 EINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N+ + + + S LG+ FL+L+I ++ +QDP +P ++ +A+LA FS Sbjct: 6 NVNSALGQYDIGNKKKEETSNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFST 65 Query: 60 MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116 +E M++ +EL S+ QASS +G +T + S + + V + Sbjct: 66 VEGIQNMSAGFEELATSYKSSQALQASSLVGGAVTIDGNTSSKLRHGELVYGSAEIPSGS 125 Query: 117 DNTEIPITT 125 DN + I Sbjct: 126 DNLFLQIED 134 >gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 321 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121 T+ + + ++ I +G++ + + G + + I Sbjct: 93 TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150 Query: 122 PITTGIRISN 131 + I + Sbjct: 151 DVKNIQTILD 160 >gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str. Eklund 17B] Length = 321 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121 T+ + + ++ I +G++ + + G + + I Sbjct: 93 TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150 Query: 122 PITTGIRISN 131 + I + Sbjct: 151 DVKNIQTILD 160 >gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 250 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 + ++ + +L QDAFL +L+ Q+ HQDP PM+ +E +QLA FS +EQ +N Sbjct: 19 AASNTPTEHETSLDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNINDGI 78 Query: 69 -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 TL E + +++ A S+IGK + + +S + I E + + Sbjct: 79 STLNETMSQSDILTAVSFIGKEVKAEGYK-------VSLSEGNASTIYYGFGETVSSIIM 131 Query: 128 RISN 131 I + Sbjct: 132 NIYD 135 >gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str. Alaska E43] Length = 321 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + SKS + +++FLKLL Q+ + DPT ++ V Q+A F+ MEQ +N Sbjct: 33 TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121 T+ + + ++ I +G++ + + G + + I Sbjct: 93 TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150 Query: 122 PITTGIRISN 131 + I + Sbjct: 151 DVKNIQTILD 160 >gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus (Silurana) tropicalis] Length = 222 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 8/115 (6%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 T S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N Sbjct: 15 ATTTATKGNSTTDPKAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLN 74 Query: 68 STLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 ++Q + + Q + IG+++ + A+ G + NT Sbjct: 75 LSMQNMSEQFAAMQTLQGTMMIGRSVLAEGDKL-----AVDDKGNGKGYFVLGNT 124 >gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2] gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2] Length = 217 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K+ + FL+++ TQ+K+QDP P+ +++ QLA FS +EQ + NS L+ + Sbjct: 21 KTAIASDFETFLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQF 80 Query: 78 NLA---QASSYIGKNITNA 93 L Q + ++G A Sbjct: 81 GLMGMAQMAGWVGHEARAA 99 >gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2] Length = 213 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I+ SK+ + D FLKLL+ Q+++QDP PM ++ +Q+A + + Sbjct: 4 IDPYAAINTPTESKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNAD 94 ++N T+ L Q +S IG+++T Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVTVEG 98 >gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON] Length = 143 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 1 MEINT-EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M +N+ + Q + L QD FLKLL Q+++Q+P +PM +AQ+A FS Sbjct: 1 MYVNSINTMSSAQASTVINKSAKLRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSS 60 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112 +EQ M++ L ++AQA + IGK + ISG V++++ S G Sbjct: 61 LEQMQNMSANL-------SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKF-SNGQA 112 Query: 113 AITVDNTEIPITTGIRISN 131 +TV ++P+ + + Sbjct: 113 ILTVGAVDVPLENVTEVRD 131 >gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96] Length = 231 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + T+ + + + K +LGQD FLKL+ TQ+ HQDPT+PM+ + + Q+A F + Sbjct: 9 DYSYLTATTKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVS 68 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTG 110 + + + + S+ QA+S +G+ ++ A G I+G +N + + Sbjct: 69 GIQDLQKSFGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNINLTASAPSV 128 Query: 111 LTAITV 116 A+T Sbjct: 129 KVAVTD 134 >gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium botulinum H04402 065] Length = 270 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 45 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 158 FAMEDVLNITD 168 >gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916] Length = 270 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 45 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 158 FAMEDVLNITD 168 >gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 236 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 20 SLQESNKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 MN+ + L + SN QASS +G+++ Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDVLVPG 111 >gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 137 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 2 EINTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ T N T QE + + + ++AFLKLL Q+K+QDP PM +E V QLA+FS Sbjct: 3 DVTTIFNNPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFS 62 Query: 59 QMEQSVQMNSTLQELLKSN----NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAI 114 +EQ + +N+TL++L S L S+ IGK I DG+ I V G+ I Sbjct: 63 ALEQVININNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT-EYKAQGIAV-EDGVLKI 120 Query: 115 TVDNTEIPITTGIRI 129 I + I Sbjct: 121 NTGEQYISMNQIKEI 135 >gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile 630] gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile] Length = 202 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + D +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum BKT015925] Length = 275 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 12/122 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 45 VNHYNKATNRGTKIVKKGHEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQ 104 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 +NST+ + A S +GK + + G + +T + D +I Sbjct: 105 MANLNSTM-------SFNSAGSMVGKTLALSSYDDYG-----RQYGGTVTNVRKDGDDII 152 Query: 123 IT 124 ++ Sbjct: 153 LS 154 >gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio metschnikovii CIP 69.14] Length = 235 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ +++ ++ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 24 QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNADG 95 + L + SN QASS +G+++ Sbjct: 84 ESLNSAMTSNQALQASSLVGRDVLVPGS 111 >gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95] gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95] Length = 220 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 7/127 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + +++ T + KK L ++AFL+LL+T++++QDPT+PM+ + VAQL+ S Sbjct: 5 VSMDSIYQSTYDAKKDREIKKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSST 64 Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 EQ M+ +QE++ S N QA+S IGK + D +I + + GL + Sbjct: 65 EQITNMSQAIQEMVNSQMSLNKLQAASLIGKTVVVNDNTI----DLQSGVAEGLNYGLDN 120 Query: 118 NTEIPIT 124 +++ + Sbjct: 121 GSQVYLE 127 >gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus 40B] Length = 236 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 20 SLQESNKKAEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 MN+ + L + SN QASS +G+++ Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDVLVPG 111 >gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri 93-146] Length = 244 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ VN + + + K L Q++FL LL+ Q+++QDPT P+K +E QLA S + Sbjct: 11 VDTSSPVNANSKTGLVADNGKDL-QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 ++N+TL + + SN QA+S IG + +I +V + G + T Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTI--LVG--KEKDGGPVSTTPF 125 Query: 118 NTEIPITT---GIRISN 131 E+ + IS+ Sbjct: 126 GFELESGAQSVVVTISD 142 >gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile ATCC 43255] Length = 202 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK + + +I GVV + + + Sbjct: 99 AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKENENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVD 171 >gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ] Length = 245 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + + + +LGQDAFL+LL+TQ+++QDP PM + VA+LA FS +EQ ++ Sbjct: 10 ADTSTTSTTSKTGAASLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEI 69 Query: 67 N---STLQELLKSNNLAQASSYIGKNITNADGSIS---GVVNAIQVS 107 N L +L + + A ++IGK I ++S G + + Sbjct: 70 NTGIDKLADLNTQSQVMGAVNFIGKTIEANGEAVSLTKGKATPVTFT 116 >gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str. 1873] Length = 272 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T + K + + ++AFLK+L ++ +QDP +++ ++QLA FS +EQ Sbjct: 42 VNHYNKATNRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 101 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 +NST+ + AS+ +GK + + G + +T + D +I Sbjct: 102 MANLNSTM-------SFNSASNMVGKTVALSSYDEYG-----KQYGGTVTNVRKDGDDIM 149 Query: 123 IT 124 ++ Sbjct: 150 VS 151 >gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 232 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 16/131 (12%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75 K T+ ++FLKLL Q+++QDP PM A++ + QLA S +EQS++ N TL ++L Sbjct: 33 EPKKATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDT 92 Query: 76 --SNNLAQASSYIGKNITNADGSIS-------------GVVNAIQVSSTGLTAITVDNTE 120 S+ + + +G+ + A +S G ++++ V +T Sbjct: 93 LKSSGMRMDMALLGRKVEVASDQMSLAGGKAEAAYTVDGAPASVKLEVLNAAGGVVYSTP 152 Query: 121 IPITTGIRISN 131 + TG ++ + Sbjct: 153 GSLKTGRQVFD 163 >gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601] gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601] Length = 224 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 +E +K+ + + + FLK+L TQ+++QDP P+ +++ QLA FS +EQ V Sbjct: 17 STGSAGEEQTKNAAVLSSDFETFLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVL 76 Query: 66 MNSTLQELLKSN---NLAQASSYIGKNITNA 93 N L +L ++ L Q S+IG+++ Sbjct: 77 TNDLLGDLAQAMTGGTLQQLGSWIGRDVLAD 107 >gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15] Length = 156 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 10/137 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + +K S ++ +D F+K+LI Q+ +QDPT PM+ E ++Q+A FS +EQ Sbjct: 7 NDASSYQLPDKTKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQM 66 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS-----GVVNAIQVSSTGLTAIT 115 + ++ ++ + L S+ IG ++ +++ V + + + ++ Sbjct: 67 QSIGKGIETMMLNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTSTVKETANVLSVK 126 Query: 116 VDNTEI--PITTGIRIS 130 D +I ++ G +S Sbjct: 127 RDGVDILAELSNGKSVS 143 >gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893] gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893] Length = 224 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 11/119 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + ++ + + ++ LG++ F++L+I Q+K+Q+P EP E ++QLA FS +E Sbjct: 8 DASDVLSKFRLQQEQTAKGSELGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLE 67 Query: 62 QSVQMNSTLQELLK---SNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109 + ++ ++ ++ S QAS+ +G+ + ADG ISG V+ +S Sbjct: 68 EMQSLSGSVDDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISGNVSVPATTSG 126 >gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri ES114] gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114] gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114] gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri MJ11] Length = 236 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + K L Q+ FL LL Q+ QDP +P++ + +AQ+A F+ ++ + Sbjct: 20 SLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 MN+ L + SN QASS +G+++ Sbjct: 80 MNTQFDSLNSSMTSNQALQASSLVGRDVLVPG 111 >gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B] Length = 144 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + S + + FLKLL+ Q+ HQDP P +S +A+ A F+ ++ Sbjct: 11 VTAGAAAPATPASSTATTSVFDPQTFLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQT 70 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNT 119 MN + L + A + IGK +T ++GVV A S G + + +T Sbjct: 71 MNTMNQLMTNLYHDMQTSSAVALIGKTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGST 129 Query: 120 EIPITTGIRISN 131 +P++ ++ Sbjct: 130 TVPLSAITEVTE 141 >gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium vulgare Y25] Length = 217 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---N 78 + + FLK+L+ Q+++QDP P+ ++E AQLA FS +EQ VQ N L +L+ N Sbjct: 25 SSDFETFLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGN 84 Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 L S +IGK++ A + S + +S + + G + Sbjct: 85 LGAMSGWIGKDVRVA-AAASYEGAPVTLSPNPAALADRAEVVVKSSDGTEV 134 >gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella silvestris BL2] gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2] Length = 135 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 5/129 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + + T+ + FL+LLIT++K+QDPT P ++ ++QLA FS +EQ Sbjct: 9 VANATGTSANASTSAATSATVDYNQFLQLLITELKNQDPTSPTDPTQYMSQLASFSSVEQ 68 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVDNTEI 121 V+ NS L LL + QA + IGK T+ADG ISGV+ ++ S+ G +TA + + I Sbjct: 69 QVKTNSALDALLAT----QAGALIGKTATSADGKISGVIASVTTSAGGDVTATLKNGSAI 124 Query: 122 PITTGIRIS 130 + +G+ IS Sbjct: 125 TLGSGVTIS 133 >gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217] gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217] Length = 230 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + K+ + + FLK+L TQ+++QDP P+++S+ QLA FS +EQ V Sbjct: 20 ATTSDNSLEKATGGFSTDFETFLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLT 79 Query: 67 NSTLQEL---LKSNNLAQASSYIGKN------ITNADGSIS------GVVNAIQVSSTGL 111 N L +L + + L+Q S +IG +T + +S A ++ +T Sbjct: 80 NDLLTDLGARIGAQGLSQVSGWIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNA 139 Query: 112 TAITVDNTEIPITTGI 127 I V+ IP T+G Sbjct: 140 QGIIVNRQPIPTTSGQ 155 >gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str. Langeland] gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str. 230613] Length = 273 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 48 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 161 FAMEDVLNITD 171 >gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str. Kyoto] Length = 273 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 48 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 161 FAMEDVLNITD 171 >gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra] Length = 273 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 48 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 161 FAMEDVLNITD 171 >gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas eutropha C91] gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91] Length = 223 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + ++ Q+ FLKLL+TQ+++QDP PM +E +Q+A S + Sbjct: 10 VSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98 ++NSTL++L+ + +A++ IG+++ + Sbjct: 70 IDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADMQ 108 >gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 235 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTGESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ENLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603] Length = 161 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + K+ + + FL LL+TQ+K+QDP+ PM +E +AQ + M Sbjct: 11 MPTTPQAGVHTTPAVTRTPKQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASM 70 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVD 117 EQ + QE +++ IG+++T + + +G V++I+ + + + Sbjct: 71 EQLTALTKVNQESFALQMRVASAALIGQDVTFTNSHGDTTTGRVDSIRY-DGEVPTVIIG 129 Query: 118 NTEIPITTGIRIS 130 + +P+ + I+ Sbjct: 130 DEHVPLNSIAGIT 142 >gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113] Length = 226 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 K LG + FLKL+ Q+ +QDP +PM S ++Q+A F ++ + ++ +E+ Sbjct: 23 KKAQNTELGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSG 82 Query: 74 -LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQ 105 L+SN QAS +G+++ A GSI G V Sbjct: 83 SLQSNQALQASGLVGRSVLVPSAEGSLEAGGSIRGAVELPS 123 >gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b] Length = 134 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 53/108 (49%), Positives = 78/108 (72%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82 LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL +L S +L QA Sbjct: 27 LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 S+IGK +T+ADGS+SGVV ++ + S+ TA D + I +TTGI +S Sbjct: 87 QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134 >gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + + + LGQ+ FL L+ TQ+++QDP PM+ ++ +AQ+A FS + M Sbjct: 19 LGVKSADDEAPANNDQLGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDM 78 Query: 67 NSTLQEL---LKSNNLAQASSYIGKNITNADGS 96 N TL L L +A AS+ +G ++ Sbjct: 79 NQTLNGLAETLAEFRIATASNMLGNSVMIPGNY 111 >gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces maris DSM 8797] Length = 145 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 67/112 (59%), Gaps = 4/112 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 L ++F+KLLIT++++QDPTEP+ + +AQ++ +++ +++++ TL+E+ +L Sbjct: 29 NGLTAESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLT 88 Query: 81 QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 QA++ IGK + +G ++GVV G + + + E+P++ + Sbjct: 89 QAAALIGKEVEGQEGQQNPVAGVVERA-FVRDGKSYVGIGAFELPVSAITSV 139 >gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5] gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5] Length = 248 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 KK + +DAFL L+ITQ+++QDPT P S+ +AQ A FSQ+EQ M + + Sbjct: 19 STLKPELPKKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVD 78 Query: 72 ELLKSNNLA---QASSYIGKNITNADGSIS 98 L+ A++YIG ++ Sbjct: 79 RLVAMQQQTMNFNAAAYIGLEARALGNTVQ 108 >gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp. CCS1] gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1] Length = 221 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + T + + + + T D FL+LL TQ+++QDP P ++E AQLA FS +EQ Sbjct: 9 TSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQ 68 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNA-DGSISGVVNAIQVSST 109 V+ N L++L S N+ Q S +IG + +G +Q++ Sbjct: 69 VETNDLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPN 118 >gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 221 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + V Q +K K LG++ FL LL+ Q+ +Q+P EP E +AQLA FSQ+E Sbjct: 7 TSSVLDQYQIKQDTKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGI 66 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAI 114 ++N+++ +L +S+ QASS +G+ + D S S + + S+ + Sbjct: 67 EKLNTSMGSMLSSFQSSQALQASSLVGRKVIVPSEKAVVDTSESLKASTVLPVSSSNVYV 126 Query: 115 TVDNTEIPITTGI 127 V + + T I Sbjct: 127 NVYDNSGSLVTRI 139 >gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis DSM 21326] Length = 236 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 11/117 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPTETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + L + SN QASS +G+++ DGS++ +VN Q + + Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQAVDNLMVRVED 141 >gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 235 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 KNKPTETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNADG 95 + L + SN QASS +G+++ Sbjct: 84 ENLNSSMTSNQALQASSLVGRDVLVPGS 111 >gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC 15579] Length = 279 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + K + L ++AF K+L ++ +QDPT +E V+QLA FS +EQ +NS Sbjct: 45 TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104 Query: 70 LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120 ++ L AS++IGK + +G+V + + + E Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157 Query: 121 IPITTGIRISN 131 + + I++ Sbjct: 158 FAMEDVLNITD 168 >gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 235 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QSKPEETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio salmonicida LFI1238] gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida LFI1238] Length = 236 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + K L Q+ FL LL Q+ QDP++P++ + +AQ+A F+ ++ + Sbjct: 20 SLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 MN L + SN QASS +G+++ Sbjct: 80 MNKQFDSLNTSMTSNQALQASSLVGRDVLVPG 111 >gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC586] Length = 235 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly) [Photorhabdus asymbiotica] Length = 232 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V Q +K F++LLI Q+K+QDPT PM+ +E A LA + +E Sbjct: 13 NTTVRELAQNSKTNKKNSEELNSNFMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGI 72 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 ++N+T+ ++ +N Q S+ IG+ + +I Sbjct: 73 EKLNTTVGSIVGQINNNQSLQVSALIGRGVMIPGDTI 109 >gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4] Length = 221 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + N + + K + +D FLKL +TQ+++QDP P +S+ ++QLA +Q+ Sbjct: 2 INSVSASNDSTAAAAAMKKATGMNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQV 61 Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98 EQ+ NS LQ++L N A S+IGK + +S Sbjct: 62 EQAYNTNSNLQDMLNQANNTTTLSAVSFIGKEVVAPGAQVS 102 >gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus] gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633] gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 235 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 NKKAEGSTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B] gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B] Length = 217 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 +K KT ++ F++LL Q+K+QDP+ P +++ VAQ+A FS +EQ Sbjct: 24 VTGTKTANGTKIVDGKTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQMTN 83 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD-NTEIPIT 124 +N+T+ S N + + K I+G V + + + + ++ Sbjct: 84 LNTTMT--FSSANNLVGKTVVTKYTDEKGNYITGTVAGTTQKDGNVYLLLDSADGKFTMS 141 Query: 125 TGIRI 129 + + Sbjct: 142 DILSV 146 >gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1] gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1] Length = 226 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + KS ++L Q+ FLKLL TQ++ QDP P+ ++ VAQ+A FSQ +MN Sbjct: 16 AKNSSTTTTKKSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMN 75 Query: 68 STLQELLKSNNLAQA---SSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITV 116 +L+ +++S ++ +++IGK ADGS +G V +S ++ Sbjct: 76 QSLKSMVQSLQQSRVADAANWIGKAALLPSKAASALADGSFAGNVTLPDAASRVDISLVD 135 Query: 117 DNTEIPIT 124 + + T Sbjct: 136 GSGTVVYT 143 >gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus VM603] gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus VM573] gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus VM223] Length = 235 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396] gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396] Length = 225 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 17/137 (12%) Query: 2 EINTEVNPTQQ------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 +INT + + + K LG++ F+ L+I Q+ +Q P +P + VAQLA Sbjct: 3 DINTANQTSDALSQYALQQKSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLA 62 Query: 56 VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITN--------ADGSISGVVNAI 104 FS +E +NST+ + S QAS+ +G+++ ADGSI+GVV Sbjct: 63 QFSSVEGIQSLNSTVDTMASQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVVELP 122 Query: 105 QVSSTGLTAITVDNTEI 121 +S ++ + E+ Sbjct: 123 AGTSQLTISVYNEAGEL 139 >gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas flueggei ATCC 43531] Length = 168 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 21/149 (14%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ Q + SK LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ Sbjct: 13 VSDYEKAQNQAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQ 72 Query: 63 SVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGS-----------ISGVVNAI 104 ++ L+++ S + Q SS IG+ I + G V + Sbjct: 73 MTNVSKGLEKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGV 132 Query: 105 QVSSTGLTAI-TVDNT--EIPITTGIRIS 130 ++ + I V+ ++ I+ +R+ Sbjct: 133 SITDGAPSIIADVNGQSHKVQISEVVRVG 161 >gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1] gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1] Length = 220 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T + S S + QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Sbjct: 10 STADINNKSATSNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGI 69 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 Q+N T++ + + + Q + IG+ + ++ Sbjct: 70 QQLNKTMESMAGQFTAMQVLQGTQMIGRTVLTEGNTL 106 >gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4] Length = 251 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ ++ SKS + LG D FL+LL ++++QDP EP +E VAQLA FSQME Sbjct: 8 VDGKIPKDTSTTSKSDTSNDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEA 67 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 ++ M ST++ + + + + T + G V+ +Q G I V+ Sbjct: 68 TLGMQSTIESSNANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYS 126 Query: 123 ITTGIRISN 131 ++ ++++ Sbjct: 127 LSDVYQVAD 135 >gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae bv. albensis VL426] Length = 235 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLSSSMTSNQALQASSLVGRDVLVPG 110 >gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM 1131] Length = 285 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 NT P + K ++ D FLK+++TQ+++QDPT+PM+ ++ +QLA + +E Sbjct: 13 NTTAGPQPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97 +++ ++ + + S QA+ +GK + I Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI 110 >gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 234 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M +++ N + + + + + F+ LL+ Q+K+QDPT PM ++ +QLA F+ Sbjct: 1 MAVSSINNNSGAGGTGTGNSAADLSNQFMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMA 60 Query: 61 EQSVQMNST---LQELLKSNNLAQASSYIGKNITNADG 95 ++NS+ +Q ++ AS+++G+++ Sbjct: 61 AGVEKLNSSVAGVQAMMIQLGSMSASAWVGRSVLIEGE 98 >gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. RC341] Length = 235 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937] Length = 223 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74 Query: 69 TLQELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVD 117 + S N Q ++ +G N+ GS GVV A + Sbjct: 75 KVGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAATSAGFVNFEITDAN 134 Query: 118 NTEIP 122 T + Sbjct: 135 GTFVK 139 >gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM 43160] Length = 140 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 S +G+D FL+LL+ Q+++QDP P +E ++Q A F+Q+E+ ++ + L Sbjct: 17 TSTVTRTDQMGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASL 76 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS--STGLTAITVDNTEIPITTGIRIS 130 + A + +G ++ D V + S + VD ++PI +S Sbjct: 77 VALQRSLSAGALVGHTVSYTDEGGVTVTGTVGSVRISGDEPSAVVDGVDVPIGRLTEVS 135 >gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae O395] gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae MJ-1236] gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80] gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52] gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587] gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51] gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457] gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39] gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2] gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3] gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2] gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395] gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae 12129(1)] gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TM 11079-80] gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC9] gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae TMA 21] gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae B33] gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae BX 330286] gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae MJ-1236] gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10] gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera CIRS 101] gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae RC27] gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae INDRE 91/1] gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae CT 5369-93] gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae RC385] gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK 757] gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae LMA3894-4] Length = 235 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6] gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus YJ016] gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio vulnificus CMCP6] gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016] gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio vulnificus MO6-24/O] Length = 235 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 SKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3] gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3] Length = 195 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + + +D FLKL + + QDP M ++ + Q A S MEQ Sbjct: 33 SPVQKANGVSTGTQNTPGIMNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQV 92 Query: 64 VQMN---STLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117 M LQ + S L ++GK + + G V ++++ + V Sbjct: 93 QNMTKAVDKLQATMYSTALDGGMKFLGKYVKGVNDKGEKVFGQVETVRLAENNDVQLIVG 152 Query: 118 NTEIPITTGIRISN 131 N + R+S+ Sbjct: 153 NQVVSTRFVERVSD 166 >gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the initiation of hook assembly) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 231 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 1 MEINTEVNPTQQEF-------SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQ 53 M I VN + + K F+KLL+ Q+K+QDPT PMK +E + Sbjct: 1 MAITGSVNESLNNTIVGEPVLAGKKKGSEELNSNFMKLLVAQMKNQDPTNPMKNNELTSH 60 Query: 54 LAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 LA + + ++N+TL ++ +N QAS+ IG+ + +I Sbjct: 61 LAQINTLAGIEKLNTTLGSIVGQINNNQPVQASALIGRGVMIPGNTI 107 >gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf0-1] gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly [Pseudomonas fluorescens Pf0-1] Length = 242 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + + LG+DAFL+LL+TQ+K+Q+P +P S VAQLA FS +E +N Sbjct: 29 GGIASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLN 88 Query: 68 STLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ST+ L S+ QASS +G+N+ + + ++ T ++ + IT Sbjct: 89 STVSSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTIT 148 Query: 125 T 125 Sbjct: 149 D 149 >gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235] Length = 205 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + +K LGQD F KLL TQ+ QDP EPM+ + +AQ+A FS++E + Sbjct: 15 NVTTTNSASSGQDRIEQKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMT 74 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123 + + + A A YIGK ++ + G + G V +++ G T + +D + Sbjct: 75 SNLTKSFDNFNSTQQFASAHGYIGKTVSLSSGEV-GEVTSVE-RQNGQTLVFLDGSNTDG 132 Query: 124 TTGIRIS 130 I Sbjct: 133 RDIGTIY 139 >gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio orientalis CIP 102891] Length = 237 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 11/117 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85 Query: 71 QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + L + SN QASS +G+++ DG+++ +V Q + + Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKKDDGNMAAMVKLPQAVDNVMVRVED 142 >gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus 16] Length = 236 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 11/117 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPNETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + L + SN QASS +G+++ DGS++ +V Q + I Sbjct: 85 ESLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVKLPQAVDNLMVRIED 141 >gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus SJ] Length = 281 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 Q+F +K LG+D FLKLL Q+ +QDP +PM + A LA FSQ+EQ MN+ Sbjct: 42 PDQKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTK 101 Query: 70 LQELL---KSNNLAQASSYIGKNITNADGSIS 98 + + + N A+S+IGK I + S+ Sbjct: 102 MDGMQKNDTTENKFMAASFIGKEIMSKGTSVQ 133 >gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN] Length = 220 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 + + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T++ + Sbjct: 22 ADPATDPNAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMA 81 Query: 75 KSN---NLAQASSYIGKNITNADGSI 97 + Q +S IG+++ ++ Sbjct: 82 DQFSALQVLQGASMIGRSVVTEGNNL 107 >gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---N 77 K LGQD FL LL+ Q+++QDP P A+E AQLA +SQ+EQ +N + EL + + Sbjct: 20 KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79 Query: 78 NLAQASSYIGKNITNADGSISGVVNAIQV 106 S IG+++ + +Q+ Sbjct: 80 QNISTLSLIGQDVVVEGAKFTLGEAPVQI 108 >gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116] Length = 235 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3] Length = 235 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ +S K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MNS Sbjct: 24 NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD 94 + L + SN QASS +G+++ Sbjct: 84 ESLNSSMTSNQALQASSLVGRDVLVPG 110 >gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium tetani E88] Length = 174 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N T + + + L ++AFL++L ++ HQDP +E V Q+A F+ +EQ +N Sbjct: 17 NYTDRGTKIVRPGEELDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLN 76 Query: 68 STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 +T++ + +L + + GV+ + + V Sbjct: 77 NTMR-FAGATSLIGKYAMVNNT-DTYGNLYHGVITGVSRDKGSIKINMVVGE 126 >gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + ++ Q + LG++ FL+LL+ Q+ +Q+P EP + E + QLA FS +E Sbjct: 12 SILDQYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVE 71 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAIT 115 ++NS++Q +L +S+ QASS +G+ + D S + + + +S+ + Sbjct: 72 KLNSSMQTILSGYQSSQALQASSLVGRKVIVPTDKAVVDTSETFKASLVLPTSSSNVFVN 131 Query: 116 VDNTE 120 + ++ Sbjct: 132 IYDST 136 >gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM 30120] Length = 288 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N+ P + K ++ D FLK+++TQ+++QDPT+PM ++ QLA + +E Sbjct: 13 NSVAGPAAAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97 +++ ++ + + S QA+ +GK + I Sbjct: 73 MNKLSDSVTGISQQIGSGQSLQATQLVGKGVLIPRNEI 110 >gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4] Length = 273 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 Q+ FL+LL+ ++++QDP EP + VAQLA F+Q+E + + + + + Sbjct: 40 KGTQYNQEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQNDMATIEAN-- 97 Query: 79 LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 S +GK + D + + G VN + G + V+ + + + Sbjct: 98 -----SLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVNEKNYKVDDIESVVD 147 >gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17] gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17] Length = 224 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 11/129 (8%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ Q + + K LG++ F++L++ Q+K+Q+P +P E ++QLA FS +E+ Sbjct: 10 TDVLSQYQLKQQSASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEM 69 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLT 112 +++ + ++ +S QAS+ +GK + A G ++G V+ + Sbjct: 70 QKLSGNVDSVIGEFRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVDVPASTGGVQV 129 Query: 113 AITVDNTEI 121 +I + E+ Sbjct: 130 SILNGSGEL 138 >gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479] Length = 205 Score = 80.1 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q +E+ + Sbjct: 61 DASDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQM-------EEMAYN 113 Query: 77 NNLAQASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +S +GK +T A ++ GVVN + + G I V+ + + I Sbjct: 114 AKSTYVTSLVGKTVTAAKFTVAGDLKKTEGVVNKVSLL-DGKFVIYVEGESYGMDEIMEI 172 >gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans C54] Length = 231 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + Q + + + + L QD FLKLL+TQ+K+QDP PM+ +E +QLA S +E Sbjct: 11 TAMGLAQTGANSASTAQGL-QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 69 Query: 65 QMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + +T+ + + A + IGK + ++ V+ + +T +D + Sbjct: 70 NLKNTMLAISGQIDVSQSMNAVAMIGKGVLVPGSNVKVGVSTENPAERVVTPYGIDLQKD 129 Query: 122 PITTGIRISN 131 +RI++ Sbjct: 130 AAKVQVRIAD 139 >gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida F1] gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1] Length = 234 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + +LG+DAFL+LL+TQ++HQ+P +P SE VAQLA FS +E Sbjct: 20 GTSTKKTTDTASKTGNDSLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGIT 79 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96 +N ++ + + S+ QASS +G+++ + Sbjct: 80 SLNDSVSSITSAMASSQALQASSLVGRSVVVQNDK 114 >gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 +T + + KK LG+DAFL+LL+TQ+K+Q+P EP E VAQLA FS +E Sbjct: 24 STTTDALGAATGAATGKKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGI 83 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96 +N T+ + S+ QASS +G+++ Sbjct: 84 TTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDK 119 >gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus B316] Length = 237 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 16/136 (11%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N EV T +E + + +D+FLK+L+ Q+K+QDP EP +E + Q A F+Q+EQ Sbjct: 13 NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQ- 71 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAIT 115 L + S L++AS +GK + + GVV+ + ++ + Sbjct: 72 ------LSNMANSMALSRASEMVGKTVRVTQYNPDNGKTTEVVGVVDFVTYNAN-KAYLN 124 Query: 116 VDNTEIPITTGIRISN 131 ++ T + + + Sbjct: 125 IEGTNYNVEDVTEVFD 140 >gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM 12885] Length = 183 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAF +LL Q+++QDP +P++ + VAQLA +Q+E++ + +T+ L L +A + Sbjct: 72 DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130 Query: 86 IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 +T ADG G V +++ + +D + Sbjct: 131 ----VTTADGEQQGTVTGVRLDP-AAPGLIIDGRPVAWADV 166 >gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42] gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42] Length = 216 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I T + + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + Sbjct: 6 IGTTATTNTGASANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTG 65 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 +N T+Q + + Q S IG+++ +S G T + V Sbjct: 66 IQTLNLTMQTMAEEFSTMQQIQGISLIGRSVLTEGDRLSISDGKGKGYFNLDNTATEVQV 125 Query: 117 D 117 D Sbjct: 126 D 126 >gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 180 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 21/150 (14%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ Sbjct: 17 LSDYEAAKNQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQ 76 Query: 63 SVQMNSTL-------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAI 104 + L + S + Q S IG+ + DG ++ G + + Sbjct: 77 MTNVAKGLSDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGV 136 Query: 105 QVSSTGLTAI-TVDNTE--IPITTGIRISN 131 ++ + I V+ + I+ +RI + Sbjct: 137 SITDGEPSVIADVNGKTHQVKISELVRIGD 166 >gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis L1-82] gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1] Length = 251 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 LG D FL+LL ++++QDP EP +E VAQLA FSQME ++ M ST++ + + Sbjct: 26 NDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIESSNANALVG 85 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + + T + G V+ +Q G I V+ ++ ++++ Sbjct: 86 KYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYSLSDVYQVAD 135 >gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 221 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K + LGQ FLKL+ Q++HQDP +PM S + QLA FS ++ +N+ Sbjct: 15 STGSKTPKKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKF 74 Query: 71 QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 L S + Q ++ +G N+ GS GVV A + + Sbjct: 75 SNLSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter shibae DFL 12] gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12] Length = 220 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 4/127 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 P +++ + + FL++L TQ+++QDP EP+ + + QLA FS +EQ Q Sbjct: 9 TATPQPSGSAQTATAIASDFETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGVEQQTQ 68 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 NS L++L + +L+Q +S++G + G++ + +++ + Sbjct: 69 TNSLLEDLGSQMGLMSLSQLASWVGMDALAE-GNVHFDGSPVEIKPNIPALAEKAELVVY 127 Query: 123 ITTGIRI 129 G + Sbjct: 128 RRDGTEV 134 >gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens PCA] gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens KN400] Length = 218 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + N T + K + +D FLKL +TQ+++QDP P ++E + QLA +Q+EQ Sbjct: 2 VYGVTNDTAAAAAAMKKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQ 61 Query: 63 SVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + S L L+ A S+IGK IT + I Sbjct: 62 AYNTNSNLSNLLNLVNGATSLSAVSFIGKEITASGDLI 99 >gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 174 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 21/149 (14%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ Q + K LG+DAFL+LL+TQ+++QDP P +E ++QLA FS +EQ Sbjct: 19 VSDYEAAQNQAKAGKKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQ 78 Query: 63 SVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGS-----------ISGVVNAI 104 ++ L+++ S + Q SS IG+ I + G V + Sbjct: 79 MTNVSKGLEKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGV 138 Query: 105 QVSSTGLTAI-TVDNT--EIPITTGIRIS 130 ++ + I V+ ++ I+ +R+ Sbjct: 139 SITDGAPSIIADVNGQSHKVQISEVVRVG 167 >gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg] Length = 275 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 15/133 (11%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 LG+DAFL+LL+ Q+++QDP P +E V+QLA FSQ+E+ Sbjct: 16 TNTAITTTNKTKLGSSELGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEELQN 75 Query: 66 MNSTLQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDN 118 + ++ + +QA S +GK++ ISG V+ I +S + ++V+ Sbjct: 76 LTASTDK-------SQAFSLVGKDVILNATDSNGRTTYISGTVDFINMSKS-KVQLSVNG 127 Query: 119 TEIPITTGIRISN 131 ++ + + Sbjct: 128 ELYDMSQLYTVVD 140 >gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b] Length = 142 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + S K+ +D F+KLL+ QI +QDP PM+ E +AQ+A FS +EQ ++ L Sbjct: 15 DQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSSLEQMQAISKQLDS 74 Query: 73 LL---KSNNLAQASSYIGKNITNADGSI------SGVVNAIQVSS-TGLTAITVDNTEIP 122 +L +++++ SS IGK I + SG V +I + TG A D T + Sbjct: 75 VLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLTGYMADLEDGTSVS 134 Query: 123 ITTGIRI 129 + I Sbjct: 135 VYDITSI 141 >gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas entomophila L48] gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas entomophila L48] Length = 234 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 11/125 (8%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 T++ ++ K LG+DAFL+LL+TQ++HQ+P +P E VAQLA FS +E +N Sbjct: 23 GTTKKPTTEKTDKNALGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLN 82 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITV 116 S++ + + S+ QASS +G+++ + S +G V Q + G I Sbjct: 83 SSVNSIITGMGSSQALQASSLVGRSVIVQNEKAMVDTTKSFTGQVVVPQNITDGKVTIKD 142 Query: 117 DNTEI 121 + + Sbjct: 143 KDGNV 147 >gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY] Length = 216 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I T + + + QD FLKLL+ Q+ +QDP P+ ++ Q+A + + Sbjct: 6 IGTTATTNTGASANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTG 65 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 +N T+Q + + Q S IG+++ +S G T + V Sbjct: 66 IQTLNLTMQTMAEEFSTMQQIQGISLIGRSVLTEGDRLSVSDGKGKGYFNLDNTATDVQV 125 Query: 117 D 117 D Sbjct: 126 D 126 >gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium sp. Marseille] gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp. Marseille] Length = 225 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + ++ + KS QD FLKLL+TQ+++QDP P+ ++ +QLA S + Sbjct: 14 SLLDQMNGAAASKKSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGID 73 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 ++N TL+ L+ +S L QAS+ I + + Sbjct: 74 KLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQL 109 >gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas europaea ATCC 19718] gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas europaea ATCC 19718] Length = 223 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + + + QD FLKLL+TQ+++QDP PM +E +Q+A S + Sbjct: 10 VSELLASNSGSIKSYRKDEEDPQDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119 ++N+TL++L+ + +A++ IG+ + + + A +VD Sbjct: 70 IDKLNTTLEKLVADSDARRSFEAATMIGRGVLVPGTDM--QLENQAAIGGFELAESVDKL 127 Query: 120 EIPITTGIRIS 130 + + I+ Sbjct: 128 TVTVKDSAGIT 138 >gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503] Length = 202 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 MEI+ + + K+ ++L DAFL LL Q+K+QDP P+ +++ V QLA FS Sbjct: 1 MEISPTSAQSAASAANQKATQSLATDLDAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFS 60 Query: 59 QMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLT 112 +EQ VQ N L+ ++ Q + IG I ++ +ISG + + + S Sbjct: 61 SLEQQVQTNKYLETMMGLLQSTLGGQQTDVIGAQIGASEITISGAFDPLPIVSGSDA 117 >gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter turnerae T7901] Length = 238 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + LGQ AFL+L+ITQ+++QDP P + +E +AQLA FS +E ++N+ Sbjct: 16 SIANKTKEEPKSNELGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNN 75 Query: 69 TLQELLKS---NNLAQASSYIGKNITNADGSI 97 + N QAS+ +G+++T Sbjct: 76 NFDSFTNNFMANQALQASTLVGRSVTVPAEQT 107 >gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198] Length = 270 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + KS + FL LLITQ+K+QDPT PM+ +E +QLA S +E Sbjct: 7 NTIIGDAPSSYHTKKSGSEDIKGNFLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGI 66 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N T+ + + + +ASS +G + + I Sbjct: 67 ETLNKTVNNIVGQIDQSQALRASSLVGHGVMVSGNKI 103 >gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira multiformis ATCC 25196] gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC 25196] Length = 222 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 S +K + QD FLKLL+TQ+K+QDP P+ ++ QLA S + ++N+ Sbjct: 15 AAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQISTVNGVERLNA 74 Query: 69 TLQELLKSN---NLAQASSYIGKNITNADGSIS 98 T++ + S QA+ IG+ + ++ Sbjct: 75 TIRTIADSFTAGQSLQAAGMIGREVLVPGSALQ 107 >gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas noxia ATCC 43541] Length = 174 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 21/134 (15%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL------- 70 K LG+DAFL+LL+TQ+K+QDP +P SE ++QLA FS +EQ ++ L Sbjct: 34 KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93 Query: 71 QELLKSNNLAQASSYIGKNITNADGS-----------ISGVVNAIQVSSTGLTAITVDNT 119 + S + Q SS IG+ + + G V + ++ + I Sbjct: 94 DNINSSVLIGQLSSMIGQPVQWITETKGEDGQLSKQSFEGKVIGVSITDGTPSIIADVGG 153 Query: 120 E---IPITTGIRIS 130 + + I+ +RI Sbjct: 154 KTHQVQISKVVRIG 167 >gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii DSM 4541] Length = 285 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N+ P + K ++ D FL +++TQ+++QDPT+PM ++ QLA + +E Sbjct: 13 NSVAGPAAVASNVPKKSQSDDMRDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 +++ ++ + + S QA+ +GK + I ++ +++ S G + Sbjct: 73 MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI--ILASLKKESNGENSTV 126 >gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 237 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 11/117 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 26 KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85 Query: 71 QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + L + SN QASS +G+++ DGS++ +V Q + + Sbjct: 86 ETLNASMTSNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMVKLPQAVDNLMVRVED 142 >gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS Sbjct: 6 VNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116 + +M +LQ+L L+SN QAS+ +G+ + ++S G ++ + ++ Sbjct: 66 DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125 Query: 117 DNTEIPITTGIRI 129 I +G I Sbjct: 126 LRAAIYTESGELI 138 >gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399] gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399] Length = 176 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 21/150 (14%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ QE + +K LG+DAFL+LL+TQ+K+QDP +P S+ ++QLA FS +EQ Sbjct: 13 LSDYEAAKNQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQ 72 Query: 63 SVQMNSTL-------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAI 104 + L + S + Q S IG+ + DG ++ G + + Sbjct: 73 MTNVAKGLSDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGV 132 Query: 105 QVSSTGLTAI-TVDNTE--IPITTGIRISN 131 ++ + I V+ + I+ +RI + Sbjct: 133 SITDGEPSVIADVNGKTHQVKISELVRIGD 162 >gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus 12B01] Length = 237 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 21 SLQDGAKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 80 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114 MN+ + L + SN QASS +G+++ DG ++ +V Q + + Sbjct: 81 MNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKPGDGGMASMVKLPQAMDNVIVRV 140 >gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter antarcticus 307] Length = 220 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 8/101 (7%) Query: 1 MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 MEI+ + P Q + SK+ + + FLK+L Q+++QDP P +SE QLA Sbjct: 1 MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93 FS +EQ+V N L L+ N +AQ + ++GK Sbjct: 61 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKEARAT 101 >gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana DSM 4359] Length = 223 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 6/119 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + Q + + KTL +DAFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ Sbjct: 7 NIYYSTLQGVRTNYTASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQI 66 Query: 64 VQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116 + S +++ +++ AQ +S IGK + + ++ G ++I + + + Sbjct: 67 TNLTSAVKDFVEAQTSVNPAQLASLIGKYVVVKNNEVNLKDGEADSIIFNLDEDANVVI 125 >gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542] Length = 186 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + S +KK+L + F+ LL+ Q+K+QDP+ PM +E +AQ + ME+ Sbjct: 16 VKNAQGLYTGANGASTAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEK 75 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 M T+ E A++ +GK + T ADG++ V + + VD E Sbjct: 76 LTTMTDTIAESFALQMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYSVPMVVVDGVE 135 Query: 121 IPITTGIRI 129 + + + Sbjct: 136 VTLDAVQTV 144 >gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella pneumophila str. Paris] gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Paris] Length = 225 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + + S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS Sbjct: 6 VNGSNSIGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116 + +M +LQ+L L+SN QAS+ +G+ + ++S G ++ + ++ Sbjct: 66 DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125 Query: 117 DNTEIPITTGIRI 129 I +G I Sbjct: 126 LRAAIYTESGELI 138 >gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8] Length = 225 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 11/109 (10%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K+ LG+DAF++L++ Q+K+Q+P EP + +AQLA FS +E+ ++ ++ Sbjct: 19 NQEGKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVD 78 Query: 72 ELL---KSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSST 109 +++ +S+ QAS+ +GK + +G I+G + + Sbjct: 79 DVVGQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGTIQVPASTGG 127 >gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17] gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17] Length = 231 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 +K TL Q AFL LL Q+K+QDP PM ++ VAQ+A FS + +MN+TL + Sbjct: 29 PAKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIAT 88 Query: 76 SNNLAQ---ASSYIGKNITNADGSISGVVNA 103 N A +Y+GK + + G + Sbjct: 89 KLNATTPADAMNYVGKTVLTEGTTAYGRTSG 119 >gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis ATCC 29906] Length = 268 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 +N T+ ++ + +A+S + + A IS Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110 >gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040] gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp. TM1040] Length = 231 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + S T + FL+L+ TQ K+QDP EPM +S+ AQLA FS +EQ V N TL +L Sbjct: 24 SATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLT 83 Query: 76 S---NNLAQASSYIGKNITNADGSISGVVNAIQVSST 109 + +N++Q + ++G+ + +++ ++ Sbjct: 84 ALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN 120 >gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella pneumophila str. Corby] gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 2300/99 Alcoy] Length = 225 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS Sbjct: 6 VNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116 + +M +LQ+L L+SN QAS+ +G+ + ++S G ++ + ++ Sbjct: 66 DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125 Query: 117 DNTEIPITTGIRI 129 I +G I Sbjct: 126 LRAAIYTESGELI 138 >gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii SS-2004] gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus bovienii SS-2004] Length = 231 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ V + K +D FL LL+ Q+K+QDPT PM+ +E QLA S ++ Sbjct: 13 NSTVGELATLNKQQPQKSGDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGV 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N TL + ++ N Q + IG+ + I Sbjct: 73 EKLNKTLGAVVGQMEGNQAMQTTMLIGRTVMIPGDKI 109 >gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella pneumophila str. Lens] gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella pneumophila str. Lens] gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella pneumophila 130b] Length = 225 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + S ++ LGQ FL+L++ Q+++QDP +P E ++QLA FS Sbjct: 6 VNGSNSAGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116 + +M +LQ+L L+SN QAS+ +G+ + ++S G ++ + ++ Sbjct: 66 DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125 Query: 117 DNTEIPITTGIRI 129 I +G I Sbjct: 126 LRAAIYTESGELI 138 >gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44] gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2] gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44] Length = 220 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ T + + QD FLKLL+ Q+ +QDP PM +E +Q+A + + Sbjct: 8 VDGTTTNTTSNTKNAVTNPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N T+ + + + Q +S IG+ + ++ Sbjct: 68 IQQLNQTMASMSSQFTAMQVLQGTSMIGRTVLTEGNTL 105 >gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T] gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T] Length = 224 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +I V +SK+ + ++ FL LL TQ+K+QDP PM+ +E +QLA S + Sbjct: 9 DIAASVLAKINTREESKASASGDMNSRFLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTV 68 Query: 61 EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98 + ++N Q + + QA++ +G+ + ++ Sbjct: 69 DGIERLNKMFQSFVDGQSAYDSMQAAALVGRGVLVEGKKLT 109 >gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus LGP32] gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222] gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32] Length = 236 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ ++ K+ L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 20 SLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 79 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114 MN+ + L + SN QASS +G+++ DG ++ +V Q + + Sbjct: 80 MNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDGGMASMVKLPQAMDNVMVRV 139 >gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + K + D FL L++ Q+K+QD P+ ++ V QLA S M+ Sbjct: 73 DSTGSSGNVIDAVFGDGDDKKVSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQ 132 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAI 114 Q +E+ + + +S +GKN++ A ++S GVV I + G I Sbjct: 133 QM-------EEMAYNAKSSYVASLVGKNVSAAKFTVSGELKKADGVVEKISLL-DGKFVI 184 Query: 115 TVDNTEIPITTGIRISN 131 VD + + I + Sbjct: 185 YVDGEAFSMDEIMEIKD 201 >gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + + +K++ +FL LL TQ+++QDP +P +SE QLA FSQ+EQ + Sbjct: 11 SSANSTTQSATAKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQVEQQIA 70 Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 N+ L+ LL L ++ +G + + I Sbjct: 71 TNAHLESLLSLQQSASLLSSTGLVGNTVEVSSSQI 105 >gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA] Length = 232 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 62/138 (44%), Gaps = 9/138 (6%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T T + K + + ++AFL +L ++ + DP +++ V Q+A F+ M Sbjct: 5 INSYTGARATDRGTQIVKPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASM 64 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS---TGLTAITVD 117 EQ +N+T+ ++ + + + K++ + +G+V ++ +S T + + Sbjct: 65 EQMTNLNTTMSSYAHNSMVGKGVTL--KSVDSEGKPYTGIVKSVTSTSAKTTISVEVNEN 122 Query: 118 NTEI----PITTGIRISN 131 I IT + + + Sbjct: 123 GNNIYKDFDITDVLTVLD 140 >gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1] gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1] Length = 220 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ T S + QD FLKLL+ Q+ +QDP PM +E +Q+A + + Sbjct: 8 VDGTTTNTTSNTKNSVTDPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 Q+N T+ + + Q +S IG+ + ++ Sbjct: 68 IQQLNQTMASMSSQFSAMQVLQGTSMIGRTVLTEGNTL 105 >gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473] Length = 229 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT ++ Q++FL LL+ Q+K+QDPT P++ +E +QLA S ++ Sbjct: 11 NTSAKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGI 70 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QAS+ +G + SI Sbjct: 71 EKLNTTLGSISGQIDSNQSLQASALLGHGVMVPGNSI 107 >gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD [Gemmatimonas aurantiaca T-27] Length = 267 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 39/67 (58%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + +G+D FLK+L+ Q+K+QDP PM + AQLA FS +EQ ++MN +L + Sbjct: 44 PTNPNGMGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESLDAQKSA 103 Query: 77 NNLAQAS 83 + + Sbjct: 104 TAEMKDA 110 >gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC 51599] Length = 256 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +S +D FLKLL+ Q+++QDP PM+ +E +QLA S + +N Sbjct: 46 ANPNVNKNDESTADGTEDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRGIESLNK 105 Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 ++ N + + IGK + Sbjct: 106 SMANFTASAAQNTALASVNMIGKKVLAPGERFE 138 >gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1] Length = 216 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 Q+N ++Q + + Q + IG+++ ++ Sbjct: 66 IQQLNLSMQTMAEQFSTMQTLQGTMMIGRSVLTEGSKMT 104 >gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp. T7-7] Length = 228 Score = 78.5 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + ++++ + +G QD FL LL+TQ+++QDP PM ++ +Q+A S + Sbjct: 9 GSTDSSAMSYAQAGTNSLMGDTQDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNG 68 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+N+TL L + + QA+ IGK + IS Sbjct: 69 INQLNTTLLALSGQMDVSQSMQAAGLIGKEVLVPGSKIS 107 >gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 216 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + S S + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Sbjct: 6 IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 Q+N ++Q + + Q + IG+N+ ++ Sbjct: 66 IQQLNLSMQTMAEQFTTMQTLQGTMMIGRNVLTEGSKMT 104 >gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB] Length = 220 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + K G+D FLK+LI Q+++Q+P P+ ++ AQLA FS +EQ Sbjct: 4 VTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQ 63 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVDN 118 MNSTL+ L + N A++ IG+ ++ G + + SS ++ D Sbjct: 64 LTNMNSTLESLSALQTTQNGIMAANLIGRQVSA--NQEGGNILTVTGSSANLSYSLAKDA 121 Query: 119 TEIPIT 124 ++ + Sbjct: 122 KKVTVN 127 >gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 236 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 25 KNKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84 Query: 71 QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + L + SN QASS +G+++ DGS++ +V Q + + Sbjct: 85 ETLNASMTSNQALQASSLVGRDVLVPGASGVKTGDGSMAAMVKLPQSVDNLMVRVED 141 >gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM 1251] Length = 221 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + +K K LG+D F+KLL+ +++HQDPTEPM + + ++Q + + +E Sbjct: 8 LNAATHAESAAANAAKDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEA 67 Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 S N L EL S + +Q S IGK +I+ Sbjct: 68 SENTNKALSELAASMSASQQFSTVSAIGKTADLGSNAIT 106 >gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus HTCC2516] Length = 222 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 6/104 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M + + + FLK+L Q+ +QDP PM +S V QLA Sbjct: 1 MALTGITPAASATQTATTGSNAAMDSNYQNFLKMLTAQVTNQDPLAPMDSSTFVTQLAQL 60 Query: 58 SQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 SQ+EQ+VQ N L+ELL +S IGK +T A IS Sbjct: 61 SQVEQTVQSNGHLRELLAGVQSFGSMAEVQLIGKPVTYASDRIS 104 >gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692] Length = 227 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 5/132 (3%) Query: 3 INTEVNPTQQEFSKSKSKK--TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +N+ + + + + +LG+ FL LL+TQ+++QDP P +E AQLA FS + Sbjct: 7 VNSSLAAQSVQSPERTGSQDDSLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSL 66 Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 EQ ++ +++ + + A S +G+N+ + + +Q+ A Sbjct: 67 EQLTNISESMEGLDAMKTAYEQNAALSMLGRNVQLEGNTFTFQNEPVQLGYNLERAAESV 126 Query: 118 NTEIPITTGIRI 129 +I +G + Sbjct: 127 EIQIMDASGKTV 138 >gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter xylosoxidans A8] Length = 232 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + S QD FLKLL+TQ+++QDP PM+ +E +QLA S +E + +T+ Sbjct: 16 AQTGANGSSTAQGLQDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGITNLKNTM 75 Query: 71 ---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + + A + IGK + I V+A + +T +D I Sbjct: 76 LAISGQIDVSQSMNAVAMIGKGVLIPGSKIKSGVDAANPEARVVTPYGLDLQGDAQKVQI 135 Query: 128 RISN 131 RIS+ Sbjct: 136 RISD 139 >gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320] gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320] Length = 264 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 13 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 +N T+ ++ + +A+S + + A IS Sbjct: 73 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110 >gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 237 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 9/113 (7%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ ++ K+ L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ + Sbjct: 21 SLQDGAKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 80 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115 MNS + L + SN QASS +G+++ ++ G+ A+ Sbjct: 81 MNSQFESLNSSMTSNQALQASSLVGRDVLVPG------AAGVKQGDGGMAAMV 127 >gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110] gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110] Length = 228 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + +N S + FLKLL+TQ+ +QDP PM+ +E +QLA S + Sbjct: 10 SGLNAATAASSAGNVSGADSEQRFLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIE 69 Query: 65 QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 ++N+ L L+ N + QA+S IG N+ + ++S Sbjct: 70 RLNTALSGLVNQTGANQVLQAASLIGYNVLSPGNALS 106 >gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2] Length = 236 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 +++ + + QD FLKLL+ Q+ +QDP P+ ++ +Q+A + + Q+N T+ Sbjct: 34 TGAKAQAVTDPSAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTM 93 Query: 71 QELLKSN---NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTE 120 Q + + Q ++ +G+++ ++S G + Q ++ I + Sbjct: 94 QRMAAQFDALQVMQGAALVGRSVMTEGSALSMAGKTGQGGFDLAQAATGVKVEIMTAGGQ 153 Query: 121 I 121 + Sbjct: 154 V 154 >gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1] gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] Length = 220 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 10/108 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNPVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNA-------DGSISGVV 101 M ++++ + Q++S IGKN ++ G V Sbjct: 68 EGMRKNQSNQMIMMENLGIVQSASLIGKNAMVPVSEFKLDGETVEGKV 115 >gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 245 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75 + K T + FL LL +Q+K+QDP PM ++E QL F+Q+EQ + N +++LL Sbjct: 24 RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83 Query: 76 -SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 ++ A A Y+GK + ++ + + V + GLTA + Sbjct: 84 GNSQAAMAVGYLGKYVEAES-TVVALQDGQAVFTYGLTAAADN 125 >gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865] Length = 223 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T S K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 15 STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74 Query: 69 ---TLQELLKSNNLAQASSYIGKNITNADGSI 97 + + S+ + + ++ +G N+ + Sbjct: 75 KVGNFSDSMNSDQVLKGAALVGHNVLVPSAQV 106 >gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium modesticaldum Ice1] Length = 188 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + +K KS LG+D FLKLL+TQ+++QDP +PM+ E +AQ+A FS +E Sbjct: 7 NVGSVYTAPAGTTTK-KSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLE 65 Query: 62 QSVQMNSTLQELLKSNN 78 Q + ++ S Sbjct: 66 QMKNIADGFEKFQSSQQ 82 >gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. campestris str. B100] gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 221 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68 +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ Sbjct: 15 TTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 69 -TLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 + + S+ + + ++ +G N+ GS GVV A + T Sbjct: 75 GNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B] Length = 235 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LGQDAFL+LL+TQ+++QDP PM E VA+LA FS +EQ ++N+ + L L Sbjct: 28 LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107 A ++IGK I ++S G +A+ + Sbjct: 88 LGAVNFIGKTIEATGNAVSLADGKASAVTFT 118 >gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 138 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ FL LL+ Q+++QDPT P+ +E QLA S + +N+ L + S+ QA++ Sbjct: 32 QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI--SSQNLQATT 89 Query: 85 YIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 +G + A+ S G ++ D Sbjct: 90 LVGHGVMVDGS------GAVYYSRNGEFSLNAD 116 >gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827] Length = 139 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 5/129 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T + S + +LG DAFLKLL+ Q+K+QDP+ P ++ +AQ A + +++ Sbjct: 10 STQATTPNQSSGQSALGSLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVDKLN 69 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + +L+ S AQA+ +G+ + T + SG+V++ + V ++ Sbjct: 70 SIAQQQTQLVASQLSAQAAGLVGREVTYTTASGERASGIVSSTTF--GSAPTLRVGAVDV 127 Query: 122 PITTGIRIS 130 P+++ S Sbjct: 128 PLSSITGTS 136 >gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus Nitrospira defluvii] Length = 101 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%) Query: 1 MEIN---TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ T+ P + K LG+D FLKLL+TQ++HQDP +PM+ + VAQ A F Sbjct: 6 MDISKVITQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQF 65 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQA 82 SQ+EQ ++ S +++ + AQ Sbjct: 66 SQLEQMSKLVSLMEKSVTLQENAQN 90 >gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus nematophila ATCC 19061] gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus nematophila ATCC 19061] Length = 233 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ V +D FL LL+ Q+K+QDPT PM+ +E Q+A S ++ Sbjct: 13 NSTVGELASAAKIKPQSSDDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGV 72 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N TL + + N Q + I + + I Sbjct: 73 EKLNKTLGSIVGQMDHNQAMQTTLLINRGVMVPGDRI 109 >gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 140 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + ++ LGQ+ F+KL +T++ QDP EP+ E +AQ+A F+ +EQ+ Sbjct: 5 AIGNELSSTTSELAQSRLGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQTRI 64 Query: 66 MNSTLQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIP 122 N L+ N +Q+ +G+ + + G+ G V AI SSTG Sbjct: 65 TNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTGPVLSVKRTDGTV 124 Query: 123 ITTG 126 +T Sbjct: 125 LTDV 128 >gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM 4582] Length = 229 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + + Sbjct: 13 NTVAGVNANRSVGGNTSQDL-HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QAS+ IG + I Sbjct: 72 EKLNTTLGAISGQINSNQSLQASALIGHGVMVPGKDI 108 >gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella drancourtii LLAP12] Length = 224 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + K LGQ FL+L++ QI++QDP +P E ++QLA FS + Sbjct: 9 NGASNATTNQVAPLGAKNLGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGVS 68 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95 +M ++Q++ L+SN QAS+ +G+ + + Sbjct: 69 KMQESMQQMANSLQSNQALQASALVGRKVLVSSD 102 >gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp. R2A62] Length = 220 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 1 MEINTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M+I+ +P Q K + + + FLK++ QI++QDP +P+ +++ QLA F Sbjct: 1 MDISQLQSPGQLSSPAGEQIKPQISSDFETFLKMMTAQIENQDPLDPIDSADYAVQLATF 60 Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSY 85 S +EQ V+ N L L L+ + Sbjct: 61 SSVEQQVKTNDLLSALGGQLQLSGMAEM 88 >gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida W619] gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619] Length = 235 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + + LG+DAFL+LL+TQ++HQ+P +P + E VAQLA FS +E + Sbjct: 23 TAKKATDTASKTGTDALGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSL 82 Query: 67 NSTLQEL---LKSNNLAQASSYIGKNITNADGS 96 N ++ + + S+ QASS +G+++ + Sbjct: 83 NESVSSITNAMASSQALQASSLVGRSVVVQNDK 115 >gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + + + + L ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E Sbjct: 16 IESSTSAVADNPNSANDANGL-KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVES 74 Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M +Q LL + + + +G+ + + Sbjct: 75 TENMAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGNEVE 113 >gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 225 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 ++ S + S Q+ FLKLL+TQ+K+QDP P+ + +Q++ S + ++N+ Sbjct: 18 NSKSGASDAMSTSEEVQNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIEKLNT 77 Query: 69 TLQELLKSN---NLAQASSYIGKNITNADGSI 97 TL+ LL + QA+ +GK++ A + Sbjct: 78 TLETLLNTFNDGQSMQAAGLLGKSVLVAGSQL 109 >gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601] gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601] Length = 223 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 V S S S+ + ++F+ LL QI++Q+P EPM ++ ++QLA SQ+EQS Sbjct: 8 TGNVTGAGTTASSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQS 67 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 V +N L+ + L S + + IG+++ + Sbjct: 68 VAVNDNLEGISSQLSSMSAIAGLNLIGRSVVAPTEQL 104 >gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118] Length = 223 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KS 76 QD FLKLL+ Q+ +QDP PM ++ +Q+A + + Q+N TL+ + S Sbjct: 31 DANASQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTS 90 Query: 77 NNLAQASSYIGKNITNADGSIS 98 + Q +S +G N+ +++ Sbjct: 91 LQVLQGASMVGHNVLVESNTLT 112 >gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1] gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1] Length = 293 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 +++G + FL+L++ Q+++QDPT+P + + Q+A F+ Q+ S +E Sbjct: 91 EGDPQSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFREFFEH 150 Query: 74 LKSNNLAQASSYIGKNITNAD 94 ++S+ +AS +G+ + Sbjct: 151 MRSDQSLRASQLVGREVVTES 171 >gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155] gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 220 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 M ++++ + Q++S IGKN A++ A + E Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAAEGLDLE 127 Query: 121 IPITTGIRIS 130 I G +S Sbjct: 128 IIDAQGQVVS 137 >gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15] Length = 225 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 13/119 (10%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++ ++ QQ + LG++ F++L++ Q+K+Q+P EP + E ++QLA FS +E Sbjct: 11 DVLSQYQLKQQNGGQ--GTSELGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLE 68 Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109 + ++ T+++++ +S QAS+ +GK + A+G I+G + + Sbjct: 69 EMQNLSGTVEDVVGQFRSTQALQASAMVGKTVLAPSQIGILGAEGEITGTIQVPASTGG 127 >gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 221 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 + S+ + + ++ +G N+ GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda EIB202] gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella tarda FL6-60] Length = 232 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 7/135 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ VN + + + + + L Q++FL LL+ Q+++QDPT P++ +E QLA S + Sbjct: 11 VDTSSPVNASSKSGLVADNGQDL-QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-SGVVNAIQVSSTGLTAITV 116 ++N+TL + + SN QASS IG + +I +G + ST + Sbjct: 70 SGIEKLNTTLGSISGQINSNQSIQASSLIGHGVMIPGKTILTGKGEGDEKVSTTPFGFEL 129 Query: 117 DNTEIPITTGIRISN 131 ++ + + IS+ Sbjct: 130 ESG--AQSVVVTISD 142 >gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 221 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 S + Q ++ +G N+ GS GVV A + + Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTATSAGTVNFEITDANGA 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876] Length = 149 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ N T + +K +L +DAFL++L ++++QDP EP +E V+Q++ FSQ+ Sbjct: 8 IDGKVVANYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQI 67 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 E ++ ++ E SN + + + I+G V + G +++++ Sbjct: 68 ESLQTVSDSISEQGASNLVGKRVILEDTDSAGNKKYITGKVQCTEKI-NGKIYLSINDNL 126 Query: 121 IPITTGIRISN 131 + + Sbjct: 127 YDYEKLYSVVD 137 >gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp. SK209-2-6] Length = 228 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T S + T D F+KLL Q ++QDP EPM +E +QLA FS +EQ V Sbjct: 12 TSTGANSSPASTGGTNLTSDFDTFIKLLTAQAQYQDPLEPMDNTEYASQLAEFSMVEQQV 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 N+ L + L N+A + ++G + + N + V+ N + Sbjct: 72 LTNTNLSTVHEQLGLGNMASLTGWVGMEVRAPAPAQFDGTNPVNVAPNPAARADEVNLIV 131 Query: 122 PITTGIRIS 130 + G ++ Sbjct: 132 RDSDGNEVN 140 >gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas axonopodis pv. citri str. 306] gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 221 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K + LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 + S+ + + ++ +G N+ GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 220 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V + + ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E Sbjct: 8 NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 M ++++ + Q++S IGKN A++ A + E Sbjct: 68 EGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAADGLDLE 127 Query: 121 IPITTGIRIS 130 I G +S Sbjct: 128 IIDAQGQVVS 137 >gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC3088] Length = 228 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 Q+ + + L +DAFL+L Q+K Q+P +PMK VAQLA FS +E Sbjct: 11 TESYMAQQRNAVYNNGEDDLDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGI 70 Query: 64 VQMNSTLQELLKS---NNLAQASSYIGKNI 90 M ++L+ L+ + ++L SS +GK + Sbjct: 71 KGMQASLETLVSNLRTDSLLTGSSLVGKKV 100 >gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3] Length = 238 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + + + FL LL TQ+K+QDP P+ ++E AQL + + Sbjct: 1 MATAVSSVDASGRLNSGTTMLASNFETFLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGV 60 Query: 61 EQSVQMNSTLQELL--KSNNLAQASSYIGKNITNA 93 EQ + N L L+ +S NL A++YIGK +T A Sbjct: 61 EQQLLTNDLLTSLVAAQSGNLNNAAAYIGKEVTAA 95 >gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 239 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + ++ + S LGQ AFL+L+ITQ+++QDP P + SE +AQLA FS +E Sbjct: 14 LSIQTQQEEEAAAAEASGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSSVEG 73 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAI 104 ++N+ SN QASS +G++++ V ++ Sbjct: 74 LERLNTNFDSFTSSFISNQALQASSLVGRSVSVPSSKAELVEGSV 118 >gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio magneticus RS-1] Length = 232 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79 LG DAFL+LL+TQ+++QDP +PM E VA+LA FS +EQ ++N L L + + Sbjct: 27 LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVS 107 A ++IGK I +++ G ++ + Sbjct: 87 IGAVNFIGKTIEANGTAVNVEDGAATSVTFT 117 >gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis glossinidius str. 'morsitans'] Length = 269 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS---Q 59 I+ T ++S+ + L D FL++++ QIK+QDPT PM ++ +Q+A Sbjct: 50 ISDSRAATSAMDAQSQGTQEL-MDNFLQMMLAQIKNQDPTNPMDNNQLASQMAQMHVALG 108 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD 94 +E+ + ++ S S+++G+ + Sbjct: 109 VEKLNNTVLGMGNMVNSVQAVNLSNWVGRTVLIVG 143 >gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera 4Rx13] Length = 225 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N ++ T + + Q+ FL LL+ Q+K+QDPT PM+ +E QLA + ++ Sbjct: 8 NESLDNTVTGVNAKSNTGQDLQNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGI 67 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QA++ IG + +I Sbjct: 68 EKLNTTLGSISGQINSNQSLQATALIGHGVMVPGSNI 104 >gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila] Length = 231 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ P ++ ++ FL++++ QI++QDPT P+ ++ V QLA FS +E Sbjct: 21 TPDIAPNSAAAGQNPQGGMQLRNEFLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVEGV 80 Query: 64 VQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 + ++ + + Q+++ I K + +++ Sbjct: 81 ESLKVLQQKSINMMDTQQVLQSTALIDKEVMVPSKTLT 118 >gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium wasabiae WPP163] gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163] Length = 224 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 12 TRTQNTSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QA++ IG+++ I Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGRSVMVPGKEI 107 >gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 + T+ + KS+ QASS +G+++ GS S Sbjct: 73 MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp. SE45] gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp. SE45] Length = 222 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + S +K+ + + FLK+L TQ+++QDP P+ +E QLA FS +EQ V N Sbjct: 14 SSSNTASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTND 73 Query: 69 TLQEL---LKSNNLAQASSYIGKNITNADGSISG 99 L+EL + N + + +IGK + G Sbjct: 74 LLKELTGVIGGNQFQELAGWIGKQALSDAPVFYG 107 >gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 232 Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 M ++T + + + + F+KLL+ Q+++QDPT PM ++ +QLA F+ Sbjct: 1 MTVSTVNDTSGNTSTYGTGSSAADLSEQFMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNT 60 Query: 60 MEQSVQMNST---LQELLKSNNLAQASSYIGKNITNADG 95 ++N++ +Q L+ A+S++G+ + Sbjct: 61 AAGVEKLNASVGNVQALMAQLGSMSAASWVGRGVLIEGD 99 >gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484] Length = 151 Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + T K L + AFL LL+ Q+++QDP+ PM +S+ + Q S ME V Sbjct: 9 GATSRTTDASGTKVPTKELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLV 68 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + T +E A+ +G+ +T A + GVV A+ + + + + +T++ Sbjct: 69 ALADTQRESFALQMRMAAAQLVGQQVTWTDAAGATQKGVVTAVSYA-GSVPTVKIGDTDV 127 Query: 122 PITTGIRI 129 + + Sbjct: 128 TLDAVSSV 135 >gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118] gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118] Length = 221 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + +K ++ LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 + S+ + + ++ +G N+ GS GVV A + T Sbjct: 75 SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8] gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8] Length = 224 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T ++ + + + + QD F+KLL+TQ+++QDP PM ++ +Q+A S + Sbjct: 13 TLLDAVNGKKNTTTTSVDAAQDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGID 72 Query: 65 QMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 ++N+TL+ L+ + + Q+ S+ IG+NI ++ Sbjct: 73 KLNNTLETLINNVQMGQSYQASNMIGRNILTPGNTVE 109 >gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella bronchiseptica RB50] gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella bronchiseptica RB50] Length = 234 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T + S S QD FL LL+TQ+++QDP PM+ +E +QLA S + Sbjct: 4 VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63 Query: 61 EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 E + +T+ + + A S IGK + +S + + G T +D Sbjct: 64 EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123 Query: 118 NTEIPITTGIRISN 131 +++ + Sbjct: 124 LQGDATKVTVKVLD 137 >gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246] Length = 120 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 S + + +GQD FL+LLI Q+++QDP +P+ + + QLA + + +N+ E+ Sbjct: 2 ASGTSALAGVGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEM 61 Query: 74 LKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 LK + Q + +GK I + + +G V ++Q S G + V + ++ + + Sbjct: 62 LKLQQITQGADLVGKTIEYTLTGEPAKTGKVTSVQ-SQDGKFVLQVGSDQVLLDQINSV 119 >gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + Q + + QD FLKLL TQ+++QDP PM+ +E +QLA + +E Sbjct: 7 NTSAAGLAQAQSNANNSVTSQGLQDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVE 66 Query: 62 QSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 + ST+Q + + A S IGK + I V+ + T +D Sbjct: 67 GISNLKSTIQAISGQIDVSQSMNAVSMIGKGVLIPGNKIKLGVDGDNAAERVATPYGLDL 126 Query: 119 TEIPITTGIRISN 131 IRI++ Sbjct: 127 QSDAQKVQIRIAD 139 >gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 224 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 V T + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 12 NSVQSTSSTTAIEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QA++ IG ++ I Sbjct: 72 KLNTTLGSISGQINNNQSMQATTLIGHSVMIPGKDI 107 >gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7] gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7] Length = 235 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 12/122 (9%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ T + K + + ++AF K+L ++ +QDP+ +E V+Q+A FS +EQ Sbjct: 18 DSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQFSSLEQM 77 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN 118 V +N+T++ L A++ IGK + SG+V+++ S + + Sbjct: 78 VNLNTTMK-------LTGANNLIGKTVNLNKLDPNGKFYSGLVSSVVKSGDTVQLNVLVG 130 Query: 119 TE 120 T+ Sbjct: 131 TK 132 >gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 221 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 K +++LGQ FLKL+ Q++HQDP +PM+ S + QLA FS ++ +N+ + Sbjct: 15 STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74 Query: 71 QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119 S + Q ++ +G N+ GS GVV A + + Sbjct: 75 SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134 Query: 120 EIP 122 + Sbjct: 135 FVK 137 >gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7] gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7] Length = 256 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 12/134 (8%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 Q + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PSQSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDE 103 Query: 69 --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117 L ++ S+ QAS +G+ N++ ++SGVV+ + D Sbjct: 104 IVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDD 163 Query: 118 NTEIPITTGIRISN 131 ++ T I S+ Sbjct: 164 KGQVVSTFNIDGSD 177 >gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative [Roseobacter litoralis Och 149] Length = 226 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 8/97 (8%) Query: 1 MEINTEVN---PTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+I TQ +++ + L + FLK+L Q + QDP EP+ +SE AQLA Sbjct: 1 MDILNAQAIQPTTQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA 60 Query: 56 VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89 FS +EQ V N L EL L SN++ Q +++IG Sbjct: 61 QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGME 97 >gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia proteamaculans 568] gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568] Length = 225 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 4/93 (4%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 N +K+ + + L ++FL LL+ Q+K+QDPT PM+ +E +QLA + ++ ++N Sbjct: 13 NSVIGANAKNNTSQDLN-NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLN 71 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +TL + + SN QAS+ IG + +I Sbjct: 72 TTLGSISGQINSNQSLQASALIGHGVMVPGSNI 104 >gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 221 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 8/138 (5%) Query: 1 MEINTEVNPTQQEFSKS-----KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M +N+ N + + + + ++ F+ L+I QI++QDPT P+ ++E V QLA Sbjct: 1 MNVNSTTNSSGNDNTSDVMNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDSTEYVTQLA 60 Query: 56 VFSQMEQSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLT 112 FSQ+E QM ST ++++ + Q++ IGK+ ++ + Sbjct: 61 QFSQVESLEQMRLNQSTQMVMMENLGIVQSAQLIGKDAMVPASEVTLDTETVHGKVYTGN 120 Query: 113 AITVDNTEIPITTGIRIS 130 A+ + +I +G +S Sbjct: 121 AVEELSIDIMDESGEVVS 138 >gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 220 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 5/100 (5%) Query: 2 EINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 E+ + + + S SKS++TL D FL LL TQIK+QDP +P+ ++ QL +S Sbjct: 3 EVGSTTSASATTSSSSKSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSS 62 Query: 60 MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGS 96 +EQS+ N+ L++L+ S + SY+G +T + + Sbjct: 63 VEQSILTNTYLEQLMASVKSGQASGYVSYLGAEVTASGDT 102 >gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 219 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + Q + + +FLKLL Q+ +QDP P+ A++ V QLA FS +EQ+V Sbjct: 8 SAAGSQQTTADVASVRLAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAV 67 Query: 65 QMNSTLQELLKSNNLAQ---ASSYIGKNITNADG 95 Q N+ L E+L + +Y+G+ + Sbjct: 68 QSNTRLAEVLGELRSSSERLDLAYVGRTVEIESD 101 >gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193] Length = 231 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 3/130 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + T D F+KLL Q K+QDPTEPM +E +QLA FS +EQ Sbjct: 9 NYNTATANSASAGGGTNLTSDFDTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQQ 68 Query: 64 VQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 V N L L+ N+A + ++G + A + + VS A Sbjct: 69 VLTNDNLGSALEQLGLGNMAALTGWVGMEVRAATAASFDGTTPVNVSPNPAAAADEVTLV 128 Query: 121 IPITTGIRIS 130 + G ++ Sbjct: 129 VRNADGDEVN 138 >gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium HTCC2080] Length = 239 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 E K+ S + +G + FL+L+I Q+++QDPT+PM ++QLA F+Q+ ++N + Sbjct: 24 AAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQELNESF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITNADG 95 L L QAS +G++++ + Sbjct: 84 SGLTETLTGQQALQASQMVGRSVSTSSN 111 >gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter salexigens DSM 3043] gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM 3043] Length = 235 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + N + + + + F+ LLITQ+++QDPT+PM S+ AQLA + + Sbjct: 14 INSTPNANASNETRTTGAESSEDLNNRFMTLLITQLQNQDPTKPMDNSDMTAQLAQINTV 73 Query: 61 EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113 ++N +L E + + QASS IG+ + ++ + + A Sbjct: 74 SGIQELNDSLGDINEQIDAGKTLQASSLIGQGVMVPGSTVRVGETEDGGVVATPLGAELA 133 Query: 114 ITVDNTEIPITTG 126 D EI IT G Sbjct: 134 TGADELEITITNG 146 >gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 135 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M+I + + + + + D FL+L + Q+ +QDP EP+ SE +AQLA FS + Sbjct: 1 MDIQSIGGNSYATTNPQTN---IKLDDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSL 57 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVD 117 E + Q N LL + QA IG+++ T + + G V + + G Sbjct: 58 EINRQSNDNSLSLLAIGSSDQALGLIGRSVEVNTQSGQAFIGDVTGVNFTQQGPMLTVKG 117 Query: 118 NTEIPITTG 126 + +T Sbjct: 118 ADDSLLTDI 126 >gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus mobilis Nb-231] Length = 221 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 13/133 (9%) Query: 1 MEINTEVNPTQQEFSKSKSK--KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++++ +++ + QD FLK+++ Q+++Q+P +PM E + Q+A F+ Sbjct: 2 IDLSALTGNGIGGTAQAPKPATNEVSQDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFT 61 Query: 59 QMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITN--------ADGSISGVVNAIQVS 107 Q+ S+ Q + QA+S +G+ + A G++ V+ Sbjct: 62 SASGIEQLQSSFQAFQTNMQSNLALQAASLVGRQVVVQSEQGYLPAGGTMDATVHLPSAV 121 Query: 108 STGLTAITVDNTE 120 A+ + + Sbjct: 122 RNLTVAVLDEAGQ 134 >gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1] Length = 230 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + T + +++ D FL LL TQ+K+QDP P+ +++ Q+ + + Sbjct: 1 MAVGGVSGITD-TSAIGRTRLAESFDTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGV 59 Query: 61 EQSVQMNSTLQELL--KSNNLAQASSYIGKNITNAD 94 EQ + N L+ L+ SN ++ A S IGK + A Sbjct: 60 EQQLLTNDLLKSLVSNTSNGVSTAVSLIGKEVRAAT 95 >gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC 11568] Length = 246 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + FL LL TQ+K+QDP P+ ++E AQL + +EQ + Sbjct: 6 SSNNAAGRVNAGGQMLASNFQTFLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLL 65 Query: 66 MNSTLQELLKSNN---LAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAIT 115 N L LLK+ L A+ YIGK+ T DG + ++ + Sbjct: 66 TNDLLTGLLKAQQGDGLTGAAQYIGKDATAVWAATRFEDGEANWSYELAADATDATLQVL 125 Query: 116 VDNTEIPIT 124 + ++ + Sbjct: 126 DASGKVVWS 134 >gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis HAW-EB3] gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3] Length = 282 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 ++ + + L Q+ F LL Q+ QDP +P+ + ++Q+A FS ++ +N Sbjct: 58 PEESSIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDE 117 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + +G ++A S G+ + I + Sbjct: 118 IVNLNSVMTSSQALQASGLVGQKVLIPSD--TGYISAEDPSINGIISTPEAIDTITVR 173 >gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp. CNPT3] Length = 232 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 + +N + P Q +K K+ L Q+ F LL Q+ +QDP +P+ SE +AQ+A F+ Sbjct: 10 LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69 Query: 60 MEQSVQMNS---TLQELLKSNNLAQASSYIGKNITNADGS 96 E +M + L+ +L S+ +ASS +GK + + Sbjct: 70 AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKVLIPSDT 109 >gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 237 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + N ++ + + S ++F+ LL+ Q+++QDPT PM ++ +QLA FS Sbjct: 6 VMNSNNAAPKDGASNGSNPEDLTNSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASG 65 Query: 63 SVQMNST---LQELLKSNNLAQASSYIGKNITNADGS 96 Q+NST + L+ S A+ ++G+ + S Sbjct: 66 VQQLNSTVMAVGSLVTSMQQMNAADWVGRQVWIEGDS 102 >gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6] Length = 138 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 Q + + ++L D F+KLL+TQ+K+QDP PM ++ +AQ S ME+ ++ Sbjct: 8 AATLQTGNAARQPVQSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTEL 67 Query: 67 NSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ +E A+ +G + T DG+ + + +TG+ +TV N+++P+ Sbjct: 68 STGAKESFSLQMRTAAAQIVGSEVAYTLPDGTAGSGIASAVSFTTGVPVVTVGNSKVPLD 127 Query: 125 TGIRIS 130 + IS Sbjct: 128 SISGIS 133 >gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella pertussis Tohama I] gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis Tohama I] gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella pertussis CS] Length = 234 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T + S S QD FL LL+TQ+++QDP PM+ +E +QLA S + Sbjct: 4 VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63 Query: 61 EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 E + +T+ + + A S IGK + +S + + G T +D Sbjct: 64 EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGID 123 Query: 118 NTEIPITTGIRISN 131 +++ + Sbjct: 124 LQGDATKVTVKVLD 137 >gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4] Length = 219 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + + + FL LL TQI++QDP +P+ ++E QL +S +EQ Sbjct: 4 VTGATSAASSGTTSASQSLSSNYELFLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVEQ 63 Query: 63 SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98 ++Q N L +++++ Q +YIG +IT + G+ + Sbjct: 64 AIQSNQHLAKMVEAMQAGQASSYVNYIGSDITASGGTAT 102 >gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3] Length = 156 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 15/131 (11%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 S S T G F L+ Q+++QDP EP S+ +AQ+A FS +EQ+ + Sbjct: 14 AASSTLSTDDSSSTFGMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQTQK--- 70 Query: 69 TLQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 L ++ + ++ +GK++ T + GVV A+ S + ++ Sbjct: 71 ----LAQTAGIQAGTAMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGW 126 Query: 121 IPITTGIRISN 131 +P+T R+++ Sbjct: 127 VPLTDVTRVTS 137 >gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium atrosepticum SCRI1043] gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum SCRI1043] Length = 224 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + Sbjct: 12 SSTQGLSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + +N QAS+ IG ++ I Sbjct: 72 KLNTTLGSISGQINNNQSMQASTLIGHSVMIPGKDI 107 >gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003] Length = 225 Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80 FLKLL TQ+ +QDPT PM +++ QLA FSQ+EQ V+ N+ L L ++ Sbjct: 32 DYQMFLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMS 91 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 + ++++G + N + +S + + G +S Sbjct: 92 EYANWVGMEARSESPGYFDGTNPVTISPNPVKGADATTVVVSDAAGNEVS 141 >gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata DSM 2581] Length = 230 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + + ++ F+ LL+TQ+++QDP PM + +QLA + + Sbjct: 10 TSTLNGGGSAGLNAGQSSALRENFMTLLVTQLQNQDPLNPMDNHQTTSQLAQINTVSGIE 69 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N +L E+ + + QAS IGK + + Sbjct: 70 KLNDSLSEINGQIDAGQSLQASGLIGKGVLVPGNRV 105 >gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1] Length = 224 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129 AQ +S IGK + + +++ G ++I + + V + + + Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVVQILDENGKVVRTEDLGTV 144 >gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC 43243] Length = 199 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NTE + L +DAFL+LL+ ++++QDP EP +E VAQLA F+Q+E+ Sbjct: 12 LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 M +++ + + + + + + GVV+ I V+S G T + ++ + Sbjct: 72 MQNMANSMAQNQANALVGKTVIMNTITASGTTSYVGGVVDRI-VNSNGKTYVGINGSLYD 130 Query: 123 ITTGIRISN 131 I I N Sbjct: 131 INDLNSILN 139 >gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas haloplanktis TAC125] gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly [Pseudoalteromonas haloplanktis TAC125] Length = 225 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%) Query: 2 EINTEVNP------TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 +I+T + +++ + L Q+ F LL Q+ QDP++P + +AQ+ Sbjct: 4 DISTSSSYLDSLRWQEKQAASKDKSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMT 63 Query: 56 VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 F+ E +NS + L + SN+ QAS+ +GK ++ Sbjct: 64 SFTMAEGISNLNSNFEALAASMTSNSALQASTLVGKQALLESDTL 108 >gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter litoralis KT71] Length = 232 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 T + S + + FL L++ ++++QDPT P S+ + QLA F + ++N+ Sbjct: 14 STPLGNEAANSIDEMDAEDFLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNA 73 Query: 69 T---LQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTE 120 + L L QA+S +G+++ G ++G NA L A Sbjct: 74 SFGGLSSALTGGQALQAASLVGRSVMTDSNLGQLTGAANAQGEVEYSLDATVDFGDS 130 >gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21] gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21] Length = 221 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ A + IGK + + + Sbjct: 79 SNSATLAAVTLIGKQVEAPGSQLELKSGSPS 109 >gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2] gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10] Length = 224 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129 AQ +S IGK + + +++ G ++I + + V + + + Sbjct: 87 AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVVQILDENGKVVRTEDLGTV 144 >gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC 49946] gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++ N S +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 1 MSVSPVNNTRGPGQVDMGSSAADLSGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60 Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95 ++N ++ +L A+S++G+ + A Sbjct: 61 SGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98 >gi|308050373|ref|YP_003913939.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] gi|307632563|gb|ADN76865.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] Length = 228 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 12/124 (9%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + +S + + L Q+ F LL Q+ QDP +P+ + ++Q++ F+ ++ +N Sbjct: 16 QESAVPESNANQALTQEDFFSLLSQQLSMQDPMKPVDNDQMISQMSSFATVDGINNLNDE 75 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADG---------SISGVVNAIQVSSTGLTAITVD 117 TL ++ SN QAS +G+ + ++GVV+A + + + Sbjct: 76 IQTLNSVMTSNQALQASGLVGQKVLIPSNVGHLGDAGTPVTGVVSAPTGTQNLMVRVEDS 135 Query: 118 NTEI 121 ++ Sbjct: 136 TGQV 139 >gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella amazonensis SB2B] gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B] Length = 242 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 +E K+ L Q+ F LL Q+ QDP +P++ + +AQ+A FS ++ +N Sbjct: 30 QTKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDH 89 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + S SG V+A + + G+ + + I + Sbjct: 90 IVNLNTVMTSSQALQASGLVGQKVLIP--SASGHVSAEEPNLKGVISTSKPIETIMVR 145 >gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii DSM 12804] gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii] Length = 231 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Query: 3 INTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N + T ++S + QD FL LL+TQ+K+QDP PM+ +E +QLA S Sbjct: 4 VNNSTDSTGLALAQSGVGANSAQSLQDRFLTLLVTQLKNQDPLNPMENAELTSQLAQIST 63 Query: 60 MEQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116 +E + +TL + + A S IGK + IS +A S T + Sbjct: 64 VEGITNLKNTLLAISGQIDVSQSMNAVSMIGKGVLIPGEKISLGTDASDPSKRVATPFGI 123 Query: 117 DNTEIPITTGIRISN 131 D ++I + Sbjct: 124 DLQGDAAKVSVKILD 138 >gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I] Length = 225 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 42/82 (51%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 Q ++ S T + F+K+L Q +QDP EP+ ++E AQLA FS +EQ + Sbjct: 13 AHTSQQPAATQKTSGLTSDFETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTK 72 Query: 66 MNSTLQELLKSNNLAQASSYIG 87 N+ L+ L LA ++ G Sbjct: 73 SNTLLEGLQSQLGLANMAALSG 94 >gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas fluorescens Pf-5] gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens Pf-5] Length = 242 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + + K++LG+DAFLKLL+TQ+ +Q+P +P S VAQLA FS +E Sbjct: 25 NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +NS++ + KS+ QASS +G+++ G+ V + ++ + +V++ Sbjct: 85 TTLNSSVNAITGNYKSSQALQASSLVGRSVIVQTGTTQ-VDTSKSMTGSVTVPSSVNSVT 143 Query: 121 IPITT 125 + +T Sbjct: 144 VTVTD 148 >gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799] Length = 222 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + + T ++ FL L++ QI++QDP P+ +E V QLA FSQ+E Sbjct: 11 GTQTSADPQVTNNPNSSTALKNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVESLE 70 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAI 104 + Q L+++ + ++ IG+ + S+ + + Sbjct: 71 HLRLGQQNQAILMENLQVLGTTNLIGREVLVDADSVELGTDTV 113 >gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2] gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena XCL-2] Length = 227 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + LGQ FL+LL TQ+++QDP +PM + V L SQ+E + +MN + Sbjct: 19 QSTNGKSNAPDQQLGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQLEATTKMNQS 78 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + + L++ + Q++S IGKN+ ++S Sbjct: 79 MLAMTTGLQNMQVMQSASLIGKNVQAIGDTMS 110 >gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521] gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 308 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + T + + S LGQ+AFL +L+ ++ + DPT+ ++ V Q+A F+ +EQ Sbjct: 5 VTNALGYTDRGTAIISSNTELGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQ 64 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 +N+T++ + Q + K+ + G++ + S T A +D + Sbjct: 65 LNNLNTTMKNFSYQQMVGQVAILNDKD--TDGNNKFGLITQVFKSGTSTYATVLDASTGT 122 Query: 123 ITT 125 + Sbjct: 123 YSN 125 >gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii HTCC2633] Length = 242 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 + + D FL LL Q+K+QDP +P+++ + V QL FS +EQ + N +L+ LL Sbjct: 20 ATAGLADNFDTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLAL 79 Query: 77 NNL---AQASSYIGKNITNAD 94 +A +IGK T Sbjct: 80 QQSDAQLKALDFIGKEATVNT 100 >gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM 15053] Length = 171 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 11/136 (8%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T S SK L + F KLL Q+++QD PM SE +AQ+ ++ Sbjct: 19 TSSAGNSAGTSSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQMVQTQMIQAIT 78 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNA---------DGSISGVVNAIQVSSTGLTAIT 115 +M++ E+ N ++ ASS +GK +T A + +G V+ I + + ++ Sbjct: 79 EMSAINLEMYAINTISYASSMVGKTVTMAEVDEDGKFTGETTTGTVSGILMGNN--PSLY 136 Query: 116 VDNTEIPITTGIRISN 131 +D E ++ + + Sbjct: 137 IDGKEYSLSQIMTVGE 152 >gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium japonicum UT26S] Length = 218 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ Sbjct: 18 NAKVGTGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKN 77 Query: 73 L---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121 L L + L A+S+IGK++ G G V+ +S + N + Sbjct: 78 LASELTGSRLGDAASWIGKSMLVQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137 >gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella parapertussis 12822] gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella parapertussis] Length = 234 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + T + S S QD FL LL+TQ+++QDP PM+ +E +QLA S + Sbjct: 4 VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63 Query: 61 EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 E + +T+ + + A S IGK + +S + + G T +D Sbjct: 64 EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123 Query: 118 NTEIPITTGIRISN 131 +++ + Sbjct: 124 LQGDATKVTVKVLD 137 >gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella denitrificans OS217] gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 263 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + ++L Q F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 51 PTESAIPEAKDQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNEE 110 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L + S+ QAS +G+ + +G +++ S G+ + ++I + Sbjct: 111 ILNLTSVTSSSQALQASGLVGRKVLIPSD--TGYLSSESPSINGVISTPEKISDITVR 166 >gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima MSB8] gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima MSB8] Length = 224 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79 L ++AFL+LL+ +++ QDP EPM+ + ++QL+ + +EQ + S +++ +++ Sbjct: 27 LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86 Query: 80 AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129 AQ +S IGK + + +++ G ++I + + V + + + Sbjct: 87 AQLASLIGKYVVVRNNTVNLVGGQSDSIIFNVDEDAHVVVQILDENGKLVRTEDLGTV 144 >gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4] gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4] Length = 256 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 44 PGNSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDE 103 Query: 69 --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117 L ++ S+ QAS +G+ N++ ++SGVV+ + D Sbjct: 104 IVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDD 163 Query: 118 NTEIPITTGIRISN 131 ++ T I S+ Sbjct: 164 KGQVVSTFNIDGSD 177 >gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii DFL-11] Length = 196 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL +L TQI++QDP +P+ ++E QL +S +EQS+Q N L+E+ L SN + Sbjct: 4 NYELFLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSS 63 Query: 81 QASSYIGKNITNADGS 96 +YIG +T A G+ Sbjct: 64 AYVNYIGTEVTAAGGT 79 >gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas ingrahamii 37] gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas ingrahamii 37] Length = 230 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 12/129 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T++ + + + + ++ F+ L++ QI++QDP P +E V+QLA FSQ+E + Sbjct: 16 TQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAE 75 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M S +Q ++ + + +S +G+ + ++ + + S G A + + Sbjct: 76 NMVSLMQRNSVMMDNLQVLATASLVGQEV---------MIRSDKFSVDGEPAQNLSGQVV 126 Query: 122 PITTGIRIS 130 + +++ Sbjct: 127 LTSPSSQVN 135 >gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105] gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105] Length = 223 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 7/104 (6%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 +++ + + + K Q+ F+ LL+ Q+K+QDP PM ++ +Q+A Sbjct: 3 IDVTSALGNNSGTTAAKKKTDENSPEAIQERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQ 62 Query: 57 FSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 + + +N+T++ + S N QA+S +G+ + + Sbjct: 63 LNTVTGINTLNATMEGVAASINANQTVQATSMLGRAVLTEGNDL 106 >gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis biprosthecum C19] Length = 218 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ T TQ +K + FL LL QI++QDP PM ++E QL +S + Sbjct: 2 VDAVTSNATTQTTATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSV 61 Query: 61 EQSVQMNSTLQELLKS----NNLAQASSYIGKNITNADGSIS 98 EQ ++ N L+++ K+ + + A +YIGK ++ + + Sbjct: 62 EQQLKGNDYLEKISKALDGGDTMNTAVNYIGKTVSAGTATAT 103 >gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 225 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + + + +L ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E Sbjct: 16 IESTNMAVAGNPNNANDANSL-KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVES 74 Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M +Q LL + + + +G+ + + Sbjct: 75 TENMAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEVE 113 >gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2] Length = 232 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 T VN S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 TTGVNAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QAS+ IG + +I Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108 >gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus denitrificans PD1222] gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222] Length = 221 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Query: 1 MEINTEV-------NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQ 53 M++NT +Q + S+S + FLK+L TQIK+QDP PM +++ Q Sbjct: 1 MDMNTSSVTGNVYEGGSQSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQ 60 Query: 54 LAVFSQMEQSV---QMNSTLQELLKSNNLAQASSYIGKNITNAD 94 LA FS +EQ V + + L + + L Q S++IG+ + Sbjct: 61 LATFSGVEQQVQTNLLLTQLLQNINGGELGQFSNWIGREVRTTS 104 >gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella tarda ATCC 23685] Length = 232 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + VN + + + + + L Q+ FL LL+ Q+++QDPT P++ +E QLA S + Sbjct: 11 VNTGSSVNASSKNGLVADNSQDL-QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + SN QASS IG + +I Sbjct: 70 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKTI 109 >gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQ 81 QD F+KLL+TQ+K+QDP P+ ++ +QLA S + +MN+TL+ ++ S Q Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92 Query: 82 ASSYIGKNITNADGSI 97 A+ IG + + Sbjct: 93 AAGMIGHGVLAPGKQM 108 >gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ Sbjct: 8 LNNFTSSNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67 Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 +VQ N+ L+ L + + +G+++T + Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105 >gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 232 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083] gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083] Length = 224 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 ++ + + FLK+L Q+++QDP P+ +++ QLA FS +EQ V+ N L Sbjct: 19 DTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTNDLL 78 Query: 71 QELLKSNNLAQASS---YIGKNITNADG 95 L + S ++G ++ + Sbjct: 79 SSLAATMASGGVESLGHWVGMDVRAGNE 106 >gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1] Length = 226 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + S + + D FLKLL TQ++HQDPT PM + + QL S +EQS+Q N L+ Sbjct: 17 AKSSTASAALAGNFDTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLE 76 Query: 72 ELLKS---NNLAQASSYIGKNITNAD 94 L+ + N +Q+ S +GK +T + Sbjct: 77 TLITANAIQNASQSVSLLGKEVTGSG 102 >gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411] gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411] Length = 226 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 14/142 (9%) Query: 1 MEINTEVNPTQ-----QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+I + N + K T+ ++ FLKLL+ Q+++QDP PM + + + Sbjct: 1 MDIASIANQANIAESMNSDKVANPKATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENT 60 Query: 56 VFSQMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSI---SGVVNAIQVSST 109 +FSQ+EQ + M+ ++ + + A+SY+GK I+ + I S ++ + + + Sbjct: 61 MFSQLEQLMNMSKSMNKFMGDLKGNPKEYAASYLGKYISTGENKINVSSNYIDRVNFTLS 120 Query: 110 GLTAITVDNTEIPITTGIRISN 131 +T+ I + G I++ Sbjct: 121 KDAKVTI---HISNSKGEDIAD 139 >gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 227 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + Sbjct: 25 AVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSIS 84 Query: 74 --LKSNNLAQASSYIGKNITNADGSI 97 + +N QA++ IG ++ I Sbjct: 85 GQINNNQSMQATTLIGHSVMIPGKDI 110 >gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM 17241] Length = 249 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + ++ + D FL L++ Q+++QD P+ ++ V QLA F+ M Q ++ + ++ Sbjct: 43 EDENDMGVSVDDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQMQELAANMKNNYA 102 Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + + + ++ A +G ++ + + ITV+ ++ + I+N Sbjct: 103 LSLVGTNVTAAKFAVSGALIKETGPISKVSLVDN-SYQITVNGQTFSLSEIMEINN 157 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 53 QLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITN--ADGSISGVVNAIQVSSTG 110 Q S++ + S+ K++ A S IGKN+T +I+G+V I Sbjct: 145 QTFSLSEIMEINNSESSGSTNNKNDQTAYLVSLIGKNVTVKHDGDTITGIVEEISTEDG- 203 Query: 111 LTAITVDNTEIPITTGIRISN 131 + +D + + + Sbjct: 204 -YKLMIDGEWYSLDEVTGVGS 223 >gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica W22703] Length = 228 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ Q Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 ASS IG+ + ++ Sbjct: 92 ASSLIGRGVMVPGTNV 107 >gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter upsaliensis RM3195] Length = 274 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + T+ + ++ L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E Sbjct: 19 DNTTQNSGDNLTSNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALE 78 Query: 62 QSVQMNSTLQELLKSN----------NLAQASSYIGKNITNADGSI 97 N+T+Q+++ A IGK T AD I Sbjct: 79 MQQNTNNTMQQMVAQMKKLSNAMGTSQSIGALGAIGKMATVADNKI 124 >gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT] gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT] Length = 228 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + S + QD F+KLLI Q+K+QDP PM +E +Q+A S + +MN++ Sbjct: 16 NGSGANNNTSAISETQDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNAS 75 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L +++ QASS IG + S Sbjct: 76 LSTFISSMQATQALQASSLIGNTVLVEGNST 106 >gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea 34H] Length = 256 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 S+ L Q F LL ++ +QDPT+P+ ++ ++Q+ FS + +N + Sbjct: 49 SDGSEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAG 108 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 + S+ QASS +G+++ D + G+ V ++ N +I + Sbjct: 109 SMTSSQALQASSLVGRSVLVEDN-VFGMAEGEAVKGKLVSDKPASNVKIYVENV 161 >gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212] gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212] Length = 222 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 3/129 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + ++ K+K QD FLKLLITQ+K+QDP +P+ +E +QLA S + Sbjct: 9 SQSISAGTTAGIKTKKDAENPQDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGI 68 Query: 64 VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 ++NSTLQ+L+ S +A IG + SI+ ++ Sbjct: 69 DKLNSTLQQLVSSADDGRSIEALEMIGHSAYVPGKSITLEGEGAIAGIELAQSVDKATVT 128 Query: 121 IPITTGIRI 129 I ++GI I Sbjct: 129 ILDSSGIAI 137 >gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella frigidimarina NCIMB 400] gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 ++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 49 PEESAIPESKDQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLNDE 108 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + +G ++ G+ + I + Sbjct: 109 ILNLNTVMSSSQALQASGLVGRKVLIPSD--TGAISTESSEIKGVISTPSAIETITVR 164 >gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179] Length = 375 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 46/83 (55%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAMEKKKHEPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T++E+ + ++ ++ Sbjct: 67 MQEESKKTMKEVANAMQSSKETN 89 >gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72] gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp. BH72] Length = 224 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ + + S ++ FL LL TQ+++QDP PM+ +E +QLA S +E + Sbjct: 14 ILASLARKDTTTTSTTQQSKNQFLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEK 73 Query: 66 MNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98 +NS + +LL+S QA++ +G+ + +++ Sbjct: 74 LNSMMTQLLQSQASAEGLQAAALVGRGVLVEGKNLT 109 >gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 232 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062] gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062] Length = 218 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 10/137 (7%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN S +++ D F+ LL TQI++QDP EP+ +SE QL ++ +EQ Sbjct: 4 INALTPNAGSSGSSAQNSINANFDLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQ 63 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLT 112 V L E L + +Q +YIGK +T D S ++A+ +T Sbjct: 64 QVATTEKLDEQLTQLKTQSASQFVNYIGKEVTAQSSTAQLKDDKASWNLDAVSAGKATVT 123 Query: 113 AITVDNTEIPITTGIRI 129 + E+ + Sbjct: 124 IKNSEGAEVYQKEIDLV 140 >gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi] gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 232 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas tunicata D2] Length = 240 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 11/130 (8%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +++ + ++ ++ L Q F L+ Q+ QDP P +AQ+ S E Sbjct: 14 VDSLRSTKDEKIQTAEEANELSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEG 73 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGL 111 M + + + SN QASS +G+N+ I+G + +S Sbjct: 74 VSNMATKFDQFAVSMTSNQALQASSLVGRNVLIDTHYVQNTPGEPITGRIPLEGPASDIK 133 Query: 112 TAITVDNTEI 121 I + + Sbjct: 134 VRIEDERGIV 143 >gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 226 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+E + Sbjct: 18 STNMSVAGNPNNANDANSLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTEN 77 Query: 66 MNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M +Q LL + + + +G+ + I Sbjct: 78 MAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEIE 113 >gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium eligens ATCC 27750] Length = 185 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 4/130 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 ++NT ++ T + S S +K TL + FL+L++ ++++QDP EP S+ +AQLA F+Q+E Sbjct: 22 DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + +MN+ + + S+ + + N+DG I G V+ + S G + + Sbjct: 81 ATKEMNTNTLQGMASDLVGKQVIMTTNQ--NSDGFIGGTVDYWE-SINGTVYLGIGGKLY 137 Query: 122 PITTGIRISN 131 I+ + + Sbjct: 138 DISDLDTVMD 147 >gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi ATCC 51908] gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908] Length = 270 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 58 PDESSIPEPNNQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDE 117 Query: 69 --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117 L ++ S+ QAS +G+ +++ + G+++ + + + D Sbjct: 118 IVNLNTVMTSSQALQASGLVGQKVLIPSDTGHVSAEGRELKGIISTPEAIESITVRVEDD 177 >gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis] Length = 182 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT + + K + FL LLITQ+++QDPT PM+ +E +QLA S +E Sbjct: 7 NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 66 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 +N T+ ++ + +A+S + + A I + S+ G A + +T+ Sbjct: 67 ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNDI-----YVDKSNNGENAGSDADTD 121 Query: 121 IPIT 124 I Sbjct: 122 IDTD 125 >gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519] gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii] Length = 128 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 41/76 (53%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N ++ + LG+DAFL+LL TQ+ HQDP P E ++Q+A FS +EQ Sbjct: 14 ITNTGTEKNYTRQVNSELGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQN 73 Query: 66 MNSTLQELLKSNNLAQ 81 +N++ L K+ Q Sbjct: 74 LNTSFAGLDKTMQDTQ 89 >gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei 269.97] Length = 287 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 41 SNPNATLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 S IGK T + + Sbjct: 101 MQKLSDSFSASMSTSALGAIGKMATVNENKV 131 >gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45] Length = 222 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLA 80 ++FL LL QI +QDP P+ +++ V+QLA +Q+EQS+ N++L++ +L + Sbjct: 28 SYNSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQISTMLSTVGAM 87 Query: 81 QASSYIGKNITNADGSI 97 IG+++ + Sbjct: 88 SDLQLIGRDVLVPSSQV 104 >gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile QCD-66c26] gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile CIP 107932] gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile QCD-76w55] gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile QCD-97b34] gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile QCD-37x79] gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile R20291] gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile QCD-32g58] gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile CD196] gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile R20291] Length = 202 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T +D F+K+L+ Q+ +QDP P +E V+QLA F+ +E+ Sbjct: 39 GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98 Query: 65 QMNSTLQELLK-------SNNLAQASSYIGK-----NITNADGSISGVVNAIQVSSTGLT 112 MN L LL ++ L+ A+S IGK D +I GVV + + + Sbjct: 99 AMNDKLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVH 158 Query: 113 A-ITVDNTEIPIT 124 + VD ++ + Sbjct: 159 LELEVDGSDKTVG 171 >gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas sp. SM9913] Length = 225 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 ++ K + L Q+ F LL Q+ +QDP++P + +AQ+ F+ E +NS Sbjct: 18 QDKQVPKKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSN 77 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSIS 98 + L + SN+ QAS+ +GK ++ Sbjct: 78 FESLAASMTSNSALQASTLVGKQALLESDTLE 109 >gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM 12809] Length = 232 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 18/138 (13%) Query: 4 NTEVNPTQQEFSK---SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 T V+ Q + S + ++ L Q FL L ITQ+++QDPT+PM S + Q A F+Q+ Sbjct: 6 TTTVDTKQYDTSDIEYNNTQGELSQSDFLNLFITQLQNQDPTDPMDDSAMMEQTATFTQV 65 Query: 61 EQSVQMNSTLQE-------LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113 E M +L E L + AS YIGK + + S G+ A Sbjct: 66 ELLTSMEKSLSEIAGGASNLNTQQLMMSASGYIGKLVEFDGNN--------TYLSDGVAA 117 Query: 114 ITVDNTEIPITTGIRISN 131 ++ + E+P T + I + Sbjct: 118 VSFEAEEVPFKTTVTIKD 135 >gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36] Length = 223 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + Q S + FL LL QI++QDP EP+ +++ VAQLA SQ+EQ Sbjct: 8 LNNFTSTNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67 Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97 +VQ N+ L+ L + + +G+++T + Sbjct: 68 AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105 >gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2] Length = 245 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + ++L ++F+KLL TQ+++QDPT P S+ +AQLA FS ++ Sbjct: 22 TGSGANSTSGTSGNGAESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFSSLQGIS 81 Query: 65 QMNST---LQELLKSNNLAQASSYIGKNITNADGS 96 Q+N+T Q L+S+ + QA++ +GK + Sbjct: 82 QLNTTVNGFQSTLQSSQIMQAAALVGKAAIVKGDT 116 >gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum gryphiswaldense MSR-1] Length = 226 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E + S ++ D FL +L Q+K+QDP PM ++E QL FS +EQ + Sbjct: 7 ESTGASNNAANSGTRLAENFDTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIA 66 Query: 66 MNSTLQELLKSNNLA---QASSYIGKNITNADGSI 97 N L+ L+ QA +YIG I A ++ Sbjct: 67 SNKNLENLISVTQTNTKAQAIAYIGHTIEVAASAV 101 >gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales bacterium SWAT-3] Length = 222 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + + + + ++ F+ L++ QI++QDP P +E VAQLA FSQ+E Sbjct: 10 VNNIESASTMTPQDNPNSASALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVES 69 Query: 63 SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 + + +L + + ++ I K +T +S Sbjct: 70 TENLVQLTQNNSTMLDNLQVLSTAALIDKTVTVKSERLS 108 >gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum centenum SW] Length = 309 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 9/108 (8%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL+LL Q+K+QDP +P + SE QL FSQ+EQ + NS L L ++ Sbjct: 33 NYETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQAT 92 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 A YIGK + I + + +D T I Sbjct: 93 VALQYIGKTVELEPSGI------PLLPGGTTVSYDIDGEVRSATLVIS 134 >gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1] gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10] gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516] gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis Antiqua] gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis CO92] gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F] gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125] gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Nepal516] gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. India 195] gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia pestis Pestoides A] gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis D106004] gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis D182038] gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis Z176003] gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 218 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica OS223] gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223] Length = 256 Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ S+ QAS +G+ + + +G ++A + G+ + EI + Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159 >gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 224 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 K+ Q+ FL LL+ Q+K+QDPT PM + V+QLA + + ++N+TL + Sbjct: 24 EKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQ 83 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 + +N QA++ IG ++ I Sbjct: 84 INNNQSMQATTLIGHSVMIPGKDI 107 >gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 232 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N V S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NAGVKAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QAS+ IG + +I Sbjct: 72 EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108 >gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1] gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1] Length = 224 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 +P +++ + + Q FL++L Q++HQDP EPM+ +E +QLA F + Q Sbjct: 12 VYDPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQN 71 Query: 66 MNSTLQELLKSN-----NLAQASSYIGKNITNADGSIS 98 LQ+L++ + QA +YIG+ + +++ Sbjct: 72 STQLLQQLVELMSGGTDQVGQAVAYIGREVLVEGNTLT 109 >gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE PC73] gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas albilineans] Length = 226 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---N 78 L Q FLKL+ Q++HQDP +PM S+ V+Q+A S ++ +N T+ L S Sbjct: 31 ALKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQ 90 Query: 79 LAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITVDNTEIP 122 + + ++ IG + DG+ G+V A LT + I Sbjct: 91 VLRGANLIGHKVLVPSASLPLGSDGAAGGMVAATSAGVVNLTVSDANGKAIK 142 >gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia pyrifoliae Ep1/96] gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++ N S +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 1 MSVSPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60 Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95 ++N ++ +L A+S++G+ + A Sbjct: 61 AGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98 >gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter antarcticus 238] Length = 226 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 8/97 (8%) Query: 1 MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 ME+ + P Q + S++ + + FLK+L Q+++QDP P +SE QLA Sbjct: 7 MELTQALTPVSQPAFSPQAEPSETVISSNFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 66 Query: 56 VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89 FS +EQ+V N L L+ N +AQ + ++GK Sbjct: 67 TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 103 >gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827] Length = 279 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 6/100 (6%) Query: 4 NTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 NT P +K+KS+ +D FLK+++TQ+++QDPT+PM+ +E +QLA + + Sbjct: 13 NTTAGPEPLKSNIPNKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATL 72 Query: 61 EQSVQMNST---LQELLKSNNLAQASSYIGKNITNADGSI 97 E +++ + + S QA+ +GK + I Sbjct: 73 ESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEI 112 >gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 225 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + ++ N + + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ Sbjct: 15 VASQSNAGIAANPQDMNSATSLQNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQS 74 Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M+ +Q LL + + + +G+ + + + Sbjct: 75 TENMSMLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEVE 113 >gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 232 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + + Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGNNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter denitrificans OCh 114] gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative [Roseobacter denitrificans OCh 114] Length = 226 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 8/97 (8%) Query: 1 MEINTEVNPT---QQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+I Q +++ + L + FLK+L Q + QDP EP+ +SE AQLA Sbjct: 1 MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA 60 Query: 56 VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89 FS +EQ V N L EL L SN++ Q +++IG Sbjct: 61 QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGME 97 >gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp. Ejp617] Length = 226 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M ++ N S +F+ LLI Q+++QDPT PM ++ +QLA F+ Sbjct: 1 MSVSPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60 Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95 ++N ++ +L A+S++G+ + A Sbjct: 61 AGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98 >gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1] Length = 218 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 K +GQ FL+LL Q++ QDP EP+ ++ VAQ+A + +MN TL+ Sbjct: 18 NAKVGTGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKN 77 Query: 73 L---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121 L L + L A+S+IGK++ G G V+ +S + N + Sbjct: 78 LASELTGSRLGDAASWIGKSMLIQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137 >gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32] gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32] Length = 221 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80 L +D FL+L +TQ+++QDP P +S+ + QLA +++EQS N+ LQ +L +N Sbjct: 24 LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83 Query: 81 -QASSYIGKNITNADGSIS 98 A S+IGK+I IS Sbjct: 84 LSAVSFIGKSILAPGSQIS 102 >gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium damselae subsp. damselae CIP 102761] Length = 243 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-- 69 Q+ K+ + L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN Sbjct: 27 QQEQKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGITKMNDQFG 86 Query: 70 -LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114 L L SN QASS +G ++ DG++SGVV Q + + Sbjct: 87 VLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVVRVNQGVDNAILRV 140 >gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs] Length = 141 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 39/65 (60%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + K LG+DAFL LL+TQ+K+QDP PM + +AQ+A FS +EQ +N+TL Sbjct: 18 SGNQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNTTLT 77 Query: 72 ELLKS 76 S Sbjct: 78 NTQSS 82 >gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 213 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 K + + FL L++ Q+K+QD P+ ++ V QLA S M+Q QM + + Sbjct: 67 DADDKMVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQMAYNAKSTYVT 126 Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + + + S ++ G+V+ + + I VD + + I Sbjct: 127 SLVGKYVSAAKFTVSGELKKSEGLVDKVSLL-DEKFVIYVDGEAYDMDEIMEI 178 >gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] Length = 218 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae bacterium KLH11] Length = 221 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 ++ T + FL++L Q ++QDP EP+ +SE +QLA FS +EQ VQ N+ L +L Sbjct: 21 TQRAALTSDFETFLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSL 80 Query: 74 -LKSNNLAQASSYIGKNITNA 93 L S NL Q +S++G ++ Sbjct: 81 TLGSVNLNQLASWVGMDVRTD 101 >gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 218 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + I+ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106 >gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 228 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + SN Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91 Query: 82 ASSYIGKNITNADGSI 97 A+S IG+ + +I Sbjct: 92 ATSLIGRGVMVPGTNI 107 >gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea DSS12] Length = 235 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 +++ + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ +N Sbjct: 23 PEEKSIPEANSQGLSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLNDE 82 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 L ++ S+ QAS +G+ + + V + T ++ + I Sbjct: 83 IINLNTVMTSSQALQASGLVGQKVLIPSDTGHLSVEDPVLKGVVSTPEAIEIIVVRIED 141 >gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120] gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120] Length = 140 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 74/133 (55%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + N S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGANQNANNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPMTYVTEIN 140 >gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC 33638] Length = 219 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+N++ + L + F+ LL+ QI++QDP PM +E V+Q+A SQ++ Sbjct: 9 ELNSKSGAVSPRQDVLPNGDELN-NQFMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQVQ 67 Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M L+ ++ ++ +G+ + + Sbjct: 68 STENMAKMLKSNTVQMERMQSIATANLVGQQVMVESDDVE 107 >gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 32953] gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis YPIII] gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis PB1/+] gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 32953] gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII] gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+] Length = 228 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91 Query: 82 ASSYIGKNITNADGSI 97 A+S IG+ + +I Sbjct: 92 ATSLIGRGVMVPGTNI 107 >gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii AK1] Length = 221 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + ++ + ++ F+ L++ QI++QDP P +E VAQLA FSQ+E Sbjct: 10 VNNIESASTLPPQENPNSAGALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVES 69 Query: 63 SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + + +Q +L + + ++ + K +T +S Sbjct: 70 TENLVQLMQNNTTMLDNLQVLSTAALVDKTVTVKSDQLS 108 >gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 232 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+ L + + ++ QA++ IG + +I Sbjct: 72 EKLNTMLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli RM2228] Length = 287 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 L S IGK T +D I Sbjct: 100 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKI 130 >gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 232 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108 >gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis KIM 10] gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis biovar Microtus str. 91001] gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis Antiqua] gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis Nepal516] gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis Pestoides F] gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis FV-1] gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis CO92] gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10] gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Microtus str. 91001] gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis Antiqua] gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92] gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides F] gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis CA88-4125] gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. IP275] gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. E1979001] gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. B42003004] gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516] gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. India 195] gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides A] gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis D106004] gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis D182038] gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27] gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003] gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 225 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNITNADGSI 97 A+S IG+ + +I Sbjct: 89 ATSLIGRGVMVPGTNI 104 >gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1] Length = 233 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 21 QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96 + + L+S+ QASS +G+N+ Sbjct: 81 DAVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112 >gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253] gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia fergusonii ECD227] Length = 231 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + T S + Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 9 DASNNGVSTTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QASS IG + +I Sbjct: 69 GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107 >gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis Angola] gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola] Length = 225 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Sbjct: 29 QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88 Query: 82 ASSYIGKNITNADGSI 97 A+S IG+ + +I Sbjct: 89 ATSLIGRGVMVPGTNI 104 >gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp. TJI-51] Length = 233 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 21 QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96 + + L+S+ QASS +G+N+ Sbjct: 81 DAVTYIAAGLQSSQALQASSLVGRNVVVQTDK 112 >gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 223 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + + + + Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M Sbjct: 18 ASSSLNVNTNPNSAGSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMT 77 Query: 68 STLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + Q LL + + ++ +GK + Sbjct: 78 TMTQNSMVLLDNLQVLSTANLVGKTVYVPSDEFE 111 >gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNITNADGSIS 98 QASS +G+++ S + Sbjct: 93 LQASSLVGRSVIIDSSSTT 111 >gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614] gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614] Length = 219 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 + FL +L TQI++QDP +P+ ++E QL +S +EQ+++ N L+E+ L SN Sbjct: 26 DYELFLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSM 85 Query: 81 QASSYIGKNITNADGSIS 98 SYIG +T + + Sbjct: 86 GYVSYIGNEVTADASTTT 103 >gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53] Length = 183 Score = 73.5 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 +L Q+K+QDP P+++++ QLA FS +EQ+V N L+ L ++ +S++GK + Sbjct: 1 MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60 Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + + + + A T + +G + Sbjct: 61 RAP-APVYFDGAPVTLHPNPMAAATAGEIVVRDASGAVV 98 >gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica OS185] gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica OS195] gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185] gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195] gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678] Length = 256 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 ++ S+ QAS +G+ + + +G ++A + G+ + EI + Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159 >gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380] Length = 230 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + L S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93 Query: 82 ASSYIGKNITNADGSI-SGVVNAI 104 AS+ IG + SI SG + + Sbjct: 94 ASTLIGHGVMIPGTSILSGTKDGV 117 >gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM603] Length = 227 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ Sbjct: 22 NNGSAGITGNPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSME 81 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M+ +Q LL + + + +G+ + + + + G A+ + ++ Sbjct: 82 NMSGLMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEF----DLGEKVQNGKIALDNASNQV 137 Query: 122 PI 123 + Sbjct: 138 TL 139 >gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus VM573] gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus MB-451] Length = 227 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + T Q+ F+ +++ QI++QDP P+ +E V+QLA FSQ++ Sbjct: 22 NNGSAGITGNPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIE 81 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 M+ +Q LL + + + +G+ + + + + G A+ + ++ Sbjct: 82 NMSGLMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEF----DLGEKVQNGKIALDNASNQV 137 Query: 122 PI 123 + Sbjct: 138 TL 139 >gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301] gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301] Length = 225 Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 ++ S +KS QD F+ LLITQ+K+QDP PM ++ +Q+A S + ++ Sbjct: 16 LDSVNGTSSSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKL 75 Query: 67 NSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98 NST++ L+ S Q+ ++ IG N+ S++ Sbjct: 76 NSTVESLMSSMQSGQSYQAANMIGHNVLVPGTSVT 110 >gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida KT2440] gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas putida KT2440] Length = 233 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 ++ + S + LG+DAFL+LL+TQ+++Q+P +P + E VAQLA FS +E +N Sbjct: 21 QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96 + + L+S+ QASS +G+N+ Sbjct: 81 DAVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112 >gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814] Length = 222 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + ++S+S D FL LL Q+++QDP EP ++E QL FS +EQ + Sbjct: 9 NQSSGSTSNSAQSQSALASDFDTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQI 68 Query: 65 QMNSTLQELLKSNNLAQ---ASSYIGKNITNAD 94 Q N L++L+ SNN A SSY+G+++ Sbjct: 69 QTNDALEQLIASNNSATGAAMSSYLGQSVEINS 101 >gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100] Length = 335 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 L +DAFLKLL+ +++HQDPT+PM + + Q A S +E N T+ +L+ + Sbjct: 41 PGAELDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDAMT 100 Query: 79 LAQAS----------SYIGKNITNADGSI 97 Q S + +GK T D + Sbjct: 101 KLQNSIAASTGMSALAAVGKLATVKDDYL 129 >gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 219 Score = 73.5 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN--NLAQA 82 + FL LL Q+K+QDP PM ++E +QL +S +EQ ++ N L L+ + +L+ A Sbjct: 28 YETFLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSA 87 Query: 83 SSYIGKNITNADGSIS 98 +YIGK+IT + + Sbjct: 88 VNYIGKSITADTNTTT 103 >gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18] gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18] Length = 221 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ N+ LQ LL Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78 Query: 78 NL---AQASSYIGKNITNADGSIS 98 + A S IGK + + Sbjct: 79 SNAGTLAAVSLIGKQVEAPGSQVE 102 >gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9] Length = 239 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 +K+KS+ QD FLKLLITQ++ QDP P+ + +Q+A S ++ ++N Sbjct: 16 AGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTSQMAQISSVQGIEKLN 75 Query: 68 STLQELLK---SNNLAQASSYIGKNITNADG 95 S++ L + ++ A+ IG Sbjct: 76 SSVSALTEAYAASQAFAAAGMIGHVSLIEGS 106 >gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus taiwanensis LMG 19424] gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus taiwanensis LMG 19424] Length = 221 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S + Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66 Query: 63 SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 MN+TL +LL ++ +++ IG+ + + Sbjct: 67 MQTMNATLSQLLGQVSASRAMDSAALIGRTVMVPGKQV 104 >gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis Bay] Length = 232 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +++ + +N T E + ++ +L QD FL++L+ Q++ QDPTEP ++ V Q+ ++Q+ Sbjct: 3 IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 EQ +++ + L + S QA+ YIG + +++ +I Sbjct: 62 EQLTNISTAMDTLIAGMASLGATQAAGYIGMGVEAGGYTVAKKGESIS 109 >gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni IA3902] Length = 294 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S L +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNAALDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 S IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130 >gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem] Length = 221 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K + +D FLKL +TQ+++QDP P ++ ++QLA +Q+EQ+ NS LQ +L Sbjct: 19 KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78 Query: 75 KSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ A + IGK + + + Sbjct: 79 SNSATLAAVTLIGKQVEAQGNQLELKSGSPS 109 >gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida GB-1] gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1] Length = 233 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 ++ + + LG+DAFL+LL+TQ+K+Q+P +P + E VAQLA FS +E +N Sbjct: 21 QASKNNSNTGAAGSALGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80 Query: 68 STLQEL---LKSNNLAQASSYIGKNITNADGS 96 ++ + L+S+ QASS +G+N+ Sbjct: 81 DSVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112 >gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato Max13] gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato K40] gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato str. DC3000] gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv. tomato T1] Length = 229 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + T+ + +S+ Sbjct: 33 LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92 Query: 80 AQASSYIGKNITNADGSIS 98 QASS +G+++ S + Sbjct: 93 LQASSLVGRSVIIDSSSTT 111 >gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma proteobacterium IMCC1989] Length = 136 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 MEI + N + + Q+ FL++L+ Q+ +QDP EP+ SE ++Q A + + Sbjct: 1 MEIESIGNSQSNTALQRAG---IDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTL 57 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116 Q+ N L LL ++ QA IGK + ++ G V I SS G +TV Sbjct: 58 TQTQSSNDKLDSLLTIQSVNQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTV 115 >gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni M1] gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 327] Length = 294 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 S IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130 >gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor [Magnetospirillum gryphiswaldense MSR-1] Length = 220 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80 D F++LL Q+++QDP +P A+E QL +S +EQ + N L E+L S +++ Sbjct: 25 DYDMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMS 84 Query: 81 QASSYIGKNITNADGSIS----GVVNAIQVSSTGLTAITV 116 Y+G + +IS G V+A V S A V Sbjct: 85 SGVGYMGHTVEAEGDTISVQDDGTVDAAWVYSLDSAATDV 124 >gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter jejuni RM1221] gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni 81-176] gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221] gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 81-176] gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni CG8421] gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter jejuni subsp. jejuni S3] gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni 305] Length = 294 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 S IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130 >gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia fergusonii ATCC 35469] gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469] Length = 231 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + S + Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 9 DASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QASS IG + +I Sbjct: 69 GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107 >gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella oneidensis MR-1] gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis MR-1] Length = 253 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PSNSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQ 100 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + + +G ++A G+ + + I I Sbjct: 101 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYISAESPGLNGVISTSEKIPVINIR 156 >gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459] gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-064] gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J1-175] gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes serotype 4b str. F2365] gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 4b H7858] gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23] gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL R2-503] gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J2-071] gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes HPB2262] gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL J1-194] gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL N1-017] gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99] gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208] gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria monocytogenes 1816] gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria monocytogenes 220] gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str. Scott A] Length = 140 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPMTYVTEIN 140 >gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium 'Dutch sediment'] Length = 234 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 15/109 (13%) Query: 1 MEINTEVNPT------QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQL 54 MEI T + S + LG+DAFLKLL+ Q+++Q+P P++ ++ +AQ Sbjct: 1 MEITNGSTTTVQSPQGAGAATSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQT 60 Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQA---------SSYIGKNITNAD 94 A F+ +EQ Q+N+++ +L S+ SSYIGK +T Sbjct: 61 AQFTSLEQLQQINASIAQLSASSAATSGSNSLDAVLASSYIGKVVTANG 109 >gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica OS155] gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155] Length = 256 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADG---------SISGVVNAIQVSSTGLTAITVDNTEIPI 123 ++ S+ QAS +G+ + +I GV++ + + ++ Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISAESPTIKGVISTPSKIPELSVRVEDEKGQVVA 169 Query: 124 TTGIRISN 131 T + S+ Sbjct: 170 TFKVDGSD 177 >gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 294 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 40 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 S IGK T +D I Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130 >gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20] gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20] Length = 286 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 S TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 39 SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 98 Query: 77 NNLAQAS----------SYIGKNITNADGSI 97 L S IGK T +D I Sbjct: 99 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKI 129 >gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria monocytogenes EGD-e] gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria monocytogenes Finland 1988] gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL R2-561] gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165] gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria monocytogenes 10403S] gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria monocytogenes J0161] gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900] gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria monocytogenes LO28] gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e] gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str. 1/2a F6854] gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar 6b str. SLCC5334] gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165] gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900] gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5578] gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria monocytogenes 08-5923] gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818] Length = 140 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 74/133 (55%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPMTYVTEIN 140 >gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium HF0770_45N15] Length = 262 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Query: 3 INTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 I T + Q ++ + LG+ FL LL+TQ+ +QDPT+PMK + + Q+A +E Sbjct: 10 ITTAKSTQQNMTARGTADNRELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVE 69 Query: 62 QSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI---SGVVNAIQVS 107 Q +N+ ++++ A ASS +G+++ S+ SGV + Sbjct: 70 QLQNLNAQTRQVIGLQKQIARASASSLLGRDVEVGSTSLSVQSGVTQPVSFK 121 >gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684] Length = 220 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + S K LG+ FL+LL+ Q+++QDP EP +E +AQLA FS +EQ N+ L ++ Sbjct: 18 ATASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVIS 77 Query: 76 S---NNLAQASSYIGKNITNADGSISGVVNAIQV 106 + +GK + + + +++ Sbjct: 78 ATADMQQLAGIDMLGKTVVAQSDNFYLNGDQVEI 111 >gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1] Length = 221 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N N + + K LG+D F+ LL+ +++HQDPTEPM + + + Q + + +E Sbjct: 8 LNAATNVDTVASTAAVDKTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLES 67 Query: 63 SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSI 97 + N L+ L S + +Q S IGK +I Sbjct: 68 AENTNKALESLAASLSASQNFSSISAIGKTADLGSNAI 105 >gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267] gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267] Length = 234 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQ 84 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97 +L LK++ A S +GK D I Sbjct: 85 KLADQLKNSTNMYAVSVLGKMAKIGDSGI 113 >gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila] Length = 241 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+ Sbjct: 24 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 83 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ DGS+ GVV + IT+++ Sbjct: 84 SSQALQASALVGQNVLLQSNVGYLEKDGSLQGVVAVGTENKYSNVKITIEDES 136 >gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] Length = 226 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + + + T ++ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + Sbjct: 17 SGANTTSVTGNPQDANSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQST 76 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M S +Q LL + + + +G+ + + Sbjct: 77 ENMASMMQNSMVLLDNMQVLSTAGLVGQTVFVSGNEFE 114 >gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae 642] Length = 229 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N+ NPT + + + LG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNSLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ GS S Sbjct: 73 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111 >gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21] Length = 285 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + ++ L +DAFLKLL+ +++HQDPT+PM + + + Q + + +E Sbjct: 20 NTTQNNGGSLTPNNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALE 79 Query: 62 QSVQMNSTLQELLKSN----------NLAQASSYIGKNITNADGSI 97 N+T+Q+++ A IGK T AD I Sbjct: 80 MQQNTNNTMQQMVAQMEKLSNAMGTSQSIGALGAIGKMATIADNKI 125 >gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC 15264] Length = 222 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ T + +++ T + FL LL +Q+K+QDP P+ +++ QL S + Sbjct: 2 VDAVTTTTEAASRTTAARTSLTSNFETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGV 61 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92 EQ + N L + L A++YIGK+ T Sbjct: 62 EQQLMTNDLLTSLLAAQQGGGLGGAANYIGKDATA 96 >gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 219 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +++ T + + ++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E Sbjct: 5 DVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVE 64 Query: 62 QSVQM--NSTLQE-LLKSNNLAQASSYIGKNITNADGSIS 98 M N ++Q ++++ + Q++ +GKN + Sbjct: 65 SLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFT 104 >gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83 Query: 75 KSNNLAQASSYIG 87 LA ++ G Sbjct: 84 AQLGLANMAAMSG 96 >gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11] gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11] Length = 228 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 39/74 (52%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L + Sbjct: 21 TPKKATGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAM 80 Query: 74 LKSNNLAQASSYIG 87 LA ++ G Sbjct: 81 QAQLGLANMAAMSG 94 >gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180] Length = 236 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ S LGQ FLKL+ITQ+ +QDPT P++ + +Q+A FS + Sbjct: 21 NSTTGTAAGTASTGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGI 80 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNA 93 ++ S+ + L L +A++ +G+++ Sbjct: 81 EELTSSFETLSKTLLQGQTVEAATLVGQSVLVP 113 >gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB 8052] Length = 339 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + + + + K+ T+ +++FLK+L Q+ + DPT+ +S V+Q+A F+ M Sbjct: 13 VNVVSSGTTDRGTKILRKTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASM 72 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA-ITVDNT 119 EQ +N+T+ + S + I N I G V + S G + V+ Sbjct: 73 EQMQNLNTTMSD--SSYQQMVGRTVITNEKDNNGSYIQGYVTQVLKESGGTYLNMLVNGK 130 Query: 120 EIPIT 124 E I Sbjct: 131 EAKIA 135 >gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA] Length = 218 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 49/80 (61%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 +K + Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ +L N Sbjct: 24 TKGSDLQNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNA 83 Query: 79 LAQASSYIGKNITNADGSIS 98 QASS IG+++ +++ Sbjct: 84 TTQASSMIGRSVQVPTNNLT 103 >gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative [Roseobacter sp. CCS2] Length = 220 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 1 MEINT---EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57 M++ +V T S + ++ + FL++L Q+K+QDP P+ +++ QLA F Sbjct: 1 MDVTQPTQQVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATF 60 Query: 58 SQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93 S +EQ+V N L+ L N L ++ +GK + + Sbjct: 61 SGVEQAVLTNDLLKSLTTQMNTGGLVDMAALVGKQVKST 99 >gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107] Length = 230 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 K + + FLK+L Q ++QDP EP+ ++E AQLA FS +EQ VQ N L+ + Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83 Query: 75 KSNNLAQASSYIG 87 LA ++ G Sbjct: 84 AQLGLANMAAMSG 96 >gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha H16] Length = 221 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + + Q+ FL +L+TQ+ +QDP PM ++ +QLA S + Sbjct: 7 VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98 MN+TL +LL + +++ IG + +S Sbjct: 67 MQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVS 105 >gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277] gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277] Length = 234 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 Q+ + + L +DAF+KLL+T++++QDPT PM + + Q + + +E N +Q Sbjct: 25 QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQ 84 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSISGVVN 102 +L LK++ A +GK D SG+V Sbjct: 85 KLADQLKNSTNMYAVGVLGKMAKIGD---SGIVK 115 >gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina loihiensis L2TR] gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR] Length = 227 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 13/128 (10%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + + L Q+ F +LL Q+ QDP++P++ + +AQ+ F+ E ++ + Sbjct: 24 ADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQFA 83 Query: 74 --LKSNNLAQASSYIGKNITNADGS--------ISGVVNAIQVSSTGLTAITVDNTEIPI 123 + SN QAS+ +G+ + ++G++ Q + I + ++ Sbjct: 84 SDMTSNQALQASTMVGRKVLVPTDQANLETGAGVTGMIATPQSAQN--VKINIKDSTGAT 141 Query: 124 TTGIRISN 131 I I + Sbjct: 142 VKTIEIGD 149 >gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri A1501] Length = 226 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79 LG+ F+ LL+TQ+ +Q+P +P SE VAQLA FS +E +N+++ LL +S+ Sbjct: 29 LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88 Query: 80 AQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 QA+S +G ++ G S+SG V + SS + + ++ + I + + Sbjct: 89 LQATSLVGSSVIVETGSALVDTSESLSGTV--VMPSSGSNVNVKIYDSTGSLVKTISLGD 146 >gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ ++ N T S + ++FL LL+ Q+K+QDPT P++ +E +QLA + + Sbjct: 11 VDNSSATNKTNGTNSLTSQNSQDLSNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTV 70 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-SGVVNAIQVSSTGLTAITV 116 ++N+TL + + SN QASS IG + +I +G +ST + Sbjct: 71 SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKNILAGKEEGATTTSTTPFGFEL 130 Query: 117 DNTEIPITTGIRISN 131 ++ + + IS+ Sbjct: 131 ESG--AQSVVVTISD 143 >gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6] Length = 224 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + + + S D FLKLL+ Q+++QDP PM ++ +Q+A + + Sbjct: 10 NSSASIYSQLSGSGSTASTTEASADRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVS 69 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 ++N ++Q + Q + +G+ + A Sbjct: 70 GIEKVNESIQAMGGQFTQMQALQGAQLVGQGVMVAG 105 >gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98] Length = 174 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 6/130 (4%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 T + + K+ +G+D FLKL +T +++QDP M + + Q++ S MEQ M Sbjct: 25 AGTTTKADEQKTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMT 84 Query: 68 S---TLQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEI 121 L++ + + L ++GK I ISG V+A+++++ + V + + Sbjct: 85 KAVNALKDTVNTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAANNEIQLVVGDKIV 144 Query: 122 PITTGIRISN 131 + +S+ Sbjct: 145 LMKYVTNVSD 154 >gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium SS3/4] Length = 189 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 12/142 (8%) Query: 1 MEINTEVNPTQQE--FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 + +++ NP Q + S SK T+ ++F+KLL Q+ +QD T PM SE ++Q+ + Sbjct: 5 ITVSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMA 64 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSST 109 ++ M +L A S IG+ +T A+G G V ++ + Sbjct: 65 MVQSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVAVTDPDTGAANGVKYGKVISVDFTQG 124 Query: 110 G-LTAITVDNTEIPITTGIRIS 130 + + D+T +++ + + Sbjct: 125 DPVVRLEGDDTSYKMSSVLGVG 146 >gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 214 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 6/98 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 1 MNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97 + +T+ + S+ QASS +G+++ S Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSVIIDSSST 95 >gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2] Length = 227 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 3/96 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + +N T + S + QD F+KLL+TQ+K+QDP PM ++ +Q+A S + Sbjct: 14 VFAALNGTSSTSTASATSAAASQDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSG 73 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADG 95 ++N+TLQ L S QA++ IG+ + Sbjct: 74 IDKLNATLQALSASMTPNQTLQAATMIGRGVLVTGN 109 >gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] Length = 235 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + +++ +FL LL TQ+ HQ+P +P+ ++ QL F+Q+EQ ++ N+ L+ L Sbjct: 28 SASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKGNTLLERL 87 Query: 74 LK---SNNLAQASSYIGKNITNADGSIS 98 ++ S QA +G+ S Sbjct: 88 VEAQKSTQSTQALMLVGRTAVVDGSEAS 115 >gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC] gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601] Length = 220 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81 QD FLKLL+ Q+ +QDP P+ ++ Q+A + + +N T+Q + + Q Sbjct: 32 QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91 Query: 82 ASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 S IG+++ + ADG+ G+ + ++ I + Sbjct: 92 GISLIGRSVLSEGDRMSFADGTGKGMFDLAGAATNVKVDIVTAGGVV 138 >gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1] gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1] Length = 234 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 Q+ FLKL I Q+K QDPT P ++ VAQ++ FS +E+ ++ L+ + L SN Sbjct: 42 DQNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQAL 101 Query: 81 QASSYIGKNITNADGSI 97 AS+ +GK+I + Sbjct: 102 SASTLVGKSILMDGSKV 118 >gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 242 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 KK L Q++FLKLL Q+ +QDP +P+ ++ ++Q+ S + +++ +L L+ Sbjct: 25 PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 84 Query: 76 SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ DGS+ GVV + IT+++ Sbjct: 85 SSQALQASALVGQNVLLQSNVGYLEKDGSLPGVVAVGTENKYSNVKITIEDES 137 >gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica KT99] gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica KT99] Length = 268 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 +++ S + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 56 PEEKSIPEASSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDE 115 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAITVD 117 L ++ S+ QAS +G+ + + + GVV+ + T + I D Sbjct: 116 IINLNAVMTSSQALQASGLVGQKVLIPSDTGYLSEEGSVLKGVVSTPEAIETIVVRIEDD 175 >gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila] Length = 244 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 +N T Q + KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q++ S E Sbjct: 7 NVNGISRTTSQTAGTTTPKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSE 66 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110 +++ + +L + S+ QASS +G+N+ + +GS+SGVV + Sbjct: 67 GIASLSTQMGKLNDQMISSQALQASSLVGQNVLLQSNMGYLDKEGSLSGVVAVGTTNKYS 126 Query: 111 LTAITVDNTE 120 IT++N + Sbjct: 127 NIKITIENEK 136 >gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str. 11128] gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180] Length = 231 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM 10331] Length = 159 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 +L + FL LL+T++++Q+P PM S+ V+Q + S++E + S L ++ S + Sbjct: 24 ASLTANEFLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGIL 83 Query: 81 QASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 ASS IG+++T D G ++G V+ + S+ G+ + V +PI I + Sbjct: 84 SASSLIGQSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAVG 134 >gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica OS145] Length = 227 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 E + ++ L Q+ F KLL Q+ QDPT+P+ + ++Q+ FS E Q++S Sbjct: 21 AEAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFT 80 Query: 72 EL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116 + + SN QAS+ +G+++ G+ +G + Q I Sbjct: 81 QFTQNMSSNQALQASTMVGRDVLVPSNKTFVESGGTATGAIALEQSGYGTKVTIKD 136 >gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus] gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633] gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus Peru-466] gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AN-5034] gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ4037] gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus K5030] gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus 10329] Length = 227 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 K+ + Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q Sbjct: 28 NPTDKNSASSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNS 87 Query: 73 --LLKSNNLAQASSYIGKNITNADGSIS 98 LL + + + +G+ + Sbjct: 88 MVLLDNMQVLSTAGLVGQTVYVNSKEFE 115 >gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia pseudotuberculosis IP 31758] gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia pseudotuberculosis IP 31758] Length = 218 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M+IN N + L + F+ LL+ QIK+QDP P +E V+Q+A Sbjct: 1 MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 SQ++ + M L+ + ++ +G+ + ++ Sbjct: 61 QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVESNEMT 106 >gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli H736] gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736] gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736] Length = 231 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella halifaxensis HAW-EB4] gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 267 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 Q+ + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 55 PQESSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEE 114 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSIS 98 L L S+ QAS +G+ + + Sbjct: 115 IGNLNALTSSSQALQASGLVGQKVLIPSDTAH 146 >gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas macleodii ATCC 27126] gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 228 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +++ L Q+ F +L Q+ +QDPT P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADGTEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAA 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + SN QASS IG+N+ + G V + G++ + V+ + Sbjct: 83 SMTSNQALQASSLIGQNVL-----VQGNVGYMANEGDGISGVIVNEKTV 126 >gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 EDL933] gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia coli O157:H7 str. EDL933] Length = 231 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3] gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 221 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Query: 1 MEINTEVNPTQQEFS-----KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M + + N + S + ++ F+ L+I QIK+QDPT P+ +E V QLA Sbjct: 1 MNVTSTSNNSDVASSADVMNSPGNDAAAIKNEFMTLMIAQIKNQDPTNPIDGTEYVTQLA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNA 93 FSQ+E QM + ++++ + Q++ +GKN Sbjct: 61 QFSQVESLEQMRANQSSQMVMMENLGIVQSAHLVGKNAMVP 101 >gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B str. REL606] gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1] gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia coli BL21(DE3)] gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B str. REL606] gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli BL21(DE3)] gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1] gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489] gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007] Length = 231 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + +I + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTILAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 226 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T N + T Q+ F+ L++ QI++QDP P+ +E V QLA FSQ++ Sbjct: 18 TTTNTGISSNGLDANDSTSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSME 77 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M+S +Q LL + + + +G+ + + Sbjct: 78 NMSSLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEFE 114 >gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305] Length = 160 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + P Q L +AFLKL+I Q+++QDPTEP E + Q++ ++ S Sbjct: 9 SPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMRSLQSS 68 Query: 64 VQMNSTLQELLKSNN-------LAQASSYIGKNITN-------------ADGSISGVVNA 103 +++ + L S + A+ IG ++T + G+V Sbjct: 69 IELEDMIASLANSQTSSASANFASSAAGLIGHSVTGTIPESTDEEGETIPAEEVEGIVER 128 Query: 104 IQVSSTGLTAITVDNTEIPITTGIRIS 130 + G +T+ + E+P+ ++ Sbjct: 129 A-ILRDGKAYVTIGDKELPVENIASVT 154 >gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31] gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31] Length = 232 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + N + + S++ + FLKLL TQ+K+QDP P S+ +Q+ + + Sbjct: 1 MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60 Query: 61 EQSVQMNSTLQELLKSNN---LAQASSYIGKNITNAD 94 EQ + N L L+ + +++ + +GK +T Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVTAET 97 >gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a] Length = 224 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117 + LK + A+ +GK +T + +SGV + + S + VD Sbjct: 70 QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVSI-SGSDVKVVVD 121 Query: 118 NTEIPITTGIRISN 131 + ++ IS+ Sbjct: 122 GKQYDLSAVKAISD 135 >gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio alginolyticus 12G01] Length = 227 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+ Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90 + + M+ T+Q+ LL + + + +G+ + Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107 >gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4] Length = 220 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---L 73 + ++ F+ L+I QI++QDPT P+ +E V+QLA FSQ+E QM + + Sbjct: 21 PGNDSASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVI 80 Query: 74 LKSNNLAQASSYIGKNITNADGSIS 98 +++ + Q++ +GK+ + Sbjct: 81 MENLGIVQSAQLVGKDAMVPASEFT 105 >gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei Ss046] gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei Ss046] Length = 231 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a str. 2457T] gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str. 2457T] gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str. 2457T] gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri 4343-70] gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671] gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71] gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218] gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304] Length = 231 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863] gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509] gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. W3110] gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5 str. 8401] gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli SE11] gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli IAI1] gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli 55989] gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9] gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp. 4_1_40B] gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9] gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. MG1655] gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr. W3110] gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str. 8401] gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr. DH10B] gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A] gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11] gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989] gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1] gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952] gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str. 11368] gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1] gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088] gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1] gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1] gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1] gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1] gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7] gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1] gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7] gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC H10407] gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli DH1] gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431] gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14] gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G] gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357] gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520] gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482] gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3] gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167] gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718] gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591] gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9] gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia coli UMNK88] gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272] gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas atlantica T6c] gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c] Length = 228 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 +S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + SN QASS IG+ + + G V + G++ + ++++ + T I I N Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDST-TLNTKITIEN 135 >gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 236 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 ++ + T + L Q +FL LL+ Q+K+QDPT PM+ +E QLA S + Sbjct: 15 VSGAKSSTGSSSLTGSNASDL-QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSG 73 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA+S IG + +I Sbjct: 74 IEKLNTTLGSVSGQIDNSQSLQAASLIGHGVMIPGTTI 111 >gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC 3083-94] gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94] gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella dysenteriae CDC 74-1112] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. Sakai] gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli UTI89] gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli 536] gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli APEC O1] gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS] gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli ATCC 8739] gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. EC4024] gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli O127:H6 str. E2348/69] gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli S88] gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. TW14359] gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W] gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str. Sakai] gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89] gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536] gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1] gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS] gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4196] gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4113] gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4076] gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4401] gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4486] gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4501] gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC508] gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11] gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4206] gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4045] gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4042] gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC4115] gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli] gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str. E2348/69] gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. TW14588] gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88] gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA] gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str. TW14359] gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15] gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042] gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615] gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034] gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1] gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1] gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1] gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1] gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W] gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli UM146] gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70] gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W] gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1] gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3] gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3] gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii ATCC 9905] gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. EC1212] gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli WV_060327] gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli EC4100B] gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. G5101] gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. 493-89] gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli O157:H- str. H 2687] gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli O55:H7 str. USDA 5905] gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. LSU-61] gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68] gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11] gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252] gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263] gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2] gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1] gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1125] gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia coli O157:H7 str. 1044] gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206] gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143] gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3] Length = 224 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117 + LK + A+ +GK +T + +SGV + + S + VD Sbjct: 70 QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNI-SGSDVKVVVD 121 Query: 118 NTEIPITTGIRISN 131 + ++ IS+ Sbjct: 122 GKQYDLSAVKAISD 135 >gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702] Length = 224 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + + F S T+ D F LL+ ++ +QDP EP +E V+Q+A F+ ++ Sbjct: 10 VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117 + LK + A+ +GK +T + +SGV + + S + VD Sbjct: 70 QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNI-SGSDVKVVVD 121 Query: 118 NTEIPITTGIRISN 131 + ++ IS+ Sbjct: 122 GKQYDLSAVKAISD 135 >gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017] Length = 229 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica PV-4] gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4] Length = 260 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + ++ + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ + Sbjct: 44 SMRLQEESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITK 103 Query: 66 MNS---TLQELLKSNNLAQASSYIGKNITNADGS 96 +N L ++ S+ QAS +G+ + + Sbjct: 104 LNEEIVNLNTVMTSSQALQASGLVGQKVLIPSDT 137 >gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri 2747-71] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605] gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia coli AA86] gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli UMN026] gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299] gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026] gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli FVEC1412] gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli FVEC1302] gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280] gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli O157:H7 str. FRIK966] gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str. EC869] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae Sd197] gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197] gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae 1617] Length = 231 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVIIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio alginolyticus 40B] Length = 227 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%) Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +NT+ + K + ++ F+ L++ QI++QDP P+ +E V QLA FSQ+ Sbjct: 15 VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90 + + M+ T+Q+ LL + + + +G+ + Sbjct: 75 QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107 >gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301] Length = 642 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli SMS-3-5] gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5] Length = 231 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSDEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter concisus 13826] gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826] Length = 235 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + L +DAF+KLL+T+++HQDPT PM + + Q + + +E N + Sbjct: 27 AAKGTGTNPNSQLDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAM 86 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSIS 98 +EL LKSN A A S +GK ++ +++ Sbjct: 87 KELVNQLKSNANAYAISALGKMVSTGSNAVT 117 >gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1] Length = 217 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ + + +K G + FLKLL+TQ+K+QDP PM ++ +Q+A + + Sbjct: 8 NSSSSVYDALNGSTTTKTDDGSERFLKLLVTQMKNQDPMNPMDNAQVTSQIAQINTVTGI 67 Query: 64 VQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSIS 98 +N T++ + S+ + Q + +G + A + Sbjct: 68 STLNQTVKSLSSQMLSSQVLQGAGLVGHTVLMAGSKLH 105 >gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638] gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638] Length = 231 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMSPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli IAI39] gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39] gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1] Length = 231 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSDEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25] gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp. Ex25] Length = 227 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72 K + + ++ F+ L++ QI++QDP P+ +E V QLA FSQ++ + M+ T+Q+ Sbjct: 28 NPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQS 87 Query: 73 --LLKSNNLAQASSYIGKNITNADGSIS 98 LL + + + +G+ + Sbjct: 88 MILLDNMQVLSTAGLVGQTVYVNSKEFE 115 >gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012] gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae 155-74] Length = 231 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMLPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 140 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPLTYVTEIN 140 >gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 236 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74 S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + + Sbjct: 29 GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88 Query: 75 KSNNLAQASSYIGKNITNADGSI 97 S+ QA++ IG + +I Sbjct: 89 DSSQSLQAANLIGHGVMIPGTTI 111 >gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli ED1a] gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli NC101] gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a] gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli NC101] Length = 231 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp. 638] gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638] Length = 236 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 + + + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + Sbjct: 28 TGNSASDLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQ 87 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 L + QAS+ IG + +I Sbjct: 88 LNDSQSLQASNLIGHGVMIPGTTI 111 >gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM 2380] Length = 218 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + LG+D FL LL+TQ+++QDP P +E +QLA +S +EQ Sbjct: 8 NQTASSSMTGSLTGSSNLGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQLFT 67 Query: 66 MNSTLQELLKSNNL---AQASSYIGKNITNADGSISGVVNAIQVSST 109 +N LQ+L +N A +G+++ S + + Sbjct: 68 VNDQLQQLETTNGNVVQMTALGLMGQDVVVQSDSFKLGGTPVTLGYD 114 >gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354] gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354] Length = 231 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas neptunium ATCC 15444] Length = 216 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLA 80 ++F+KLL Q+++QDP PM +++ V QLA FS +EQ V N+ L ++ N Sbjct: 26 EYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGL 85 Query: 81 QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 AS ++G+++T A + + S T + + G + Sbjct: 86 MASQWLGEDVTFASSFMPYTGSEATFSYEAPEGATKSTLTVKDSEGNAV 134 >gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli CFT073] gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073] gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli 83972] gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1] gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1] gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972] gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1] Length = 231 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp. ANA-3] gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3] Length = 259 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 47 PTSSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQ 106 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + + +G ++A G+ + + I + Sbjct: 107 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYISAESPGLNGVISTSEKIPVINVR 162 >gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82] gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli O83:H1 str. NRG 857C] Length = 231 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 229 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + + S TLG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E + ST+ Sbjct: 23 TPTATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTVDT 82 Query: 73 LLK---SNNLAQASSYIGKNITNADGSIS 98 + S+ QASS +G+++ S + Sbjct: 83 IATSYKSSQALQASSLVGRSVIIDSSSTT 111 >gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596] gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067] gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171] Length = 140 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPLTYVTEIN 140 >gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 414] Length = 286 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 10/89 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N T+Q+++++ Sbjct: 39 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVETME 98 Query: 79 LAQAS----------SYIGKNITNADGSI 97 S IGK T + + Sbjct: 99 KLSNSFSTSMSTAAVGAIGKMATVNENKV 127 >gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654] gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654] Length = 227 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74 KSKS + + FLK+L Q+++QDP P+++S+ QLA FS +EQ VQ N L+ L Sbjct: 25 PKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKALQ 84 Query: 75 KSNNLAQASSYIG 87 + S G Sbjct: 85 TQLGVMSMSDLAG 97 >gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD [Pseudoalteromonas haloplanktis ANT/505] Length = 226 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 QQ + L Q+ F LL Q+ +QDP+ P + +AQ+ F+ + +N+ Sbjct: 20 QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79 Query: 71 QEL---LKSNNLAQASSYIGKNITNADGSI 97 + L + SN+ QAS+ +GK ++ Sbjct: 80 ESLASSMTSNSALQASTLVGKQALLESNTL 109 >gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183] gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175] gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183] gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175] Length = 256 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72 + L QD F LL Q+ QDP +P+ + +AQ+A FS ++ ++N L Sbjct: 50 PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109 Query: 73 LLKSNNLAQASSYIGKNITNADGS 96 ++ S+ QAS +G+ + + Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDT 133 >gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22] gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171] gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str. 12009] gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010] Length = 231 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIHGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1] Length = 192 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + S L D F KLL Q+++QD + PM SE + Q+ + M+ Sbjct: 8 NNYSSLINSLTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMN 67 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS-------GVVNAIQVSST--GLTAIT 115 ++ +++ + N + +S +GK + A + G V + + S + Sbjct: 68 NFSTAMEDFSQINTINYGTSMMGKEVMIAAADKTGQIKKINGTVTRVDIFSGIPTIYIND 127 Query: 116 VDNTEIPITTGIRISN 131 D T I + + Sbjct: 128 DDKTGYSIANIMSVYE 143 >gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4] Length = 218 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + S S S QD F+ LLITQ+K QDP PM ++ +QLA S + Sbjct: 6 NDLLTTMNTRKSGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 ++NST++ + ++S+ QAS+ IG+ + S++ Sbjct: 66 DKLNSTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103 >gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis ATCC 43879] Length = 507 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 47/83 (56%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ ++ L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSTAAREKKKESAQIANGLDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T++E+ ++ +Q ++ Sbjct: 67 MQEENKKTMKEVAQAMKASQETN 89 >gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM] gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM] Length = 227 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Query: 1 MEINTEVNPTQQEFSKSKSKK-----------TLGQDAFLKLLITQIKHQDPTEPMKASE 49 M++ T T Q ++ + + FLK+L Q+++QDP P++ ++ Sbjct: 1 MDVTTSTTSTGQAAQSGQASTQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTD 60 Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL 73 QLA FS +EQ V+ N L L Sbjct: 61 FAVQLATFSTVEQQVRTNDLLGAL 84 >gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 236 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S + S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + Sbjct: 16 NSTSSATGSSSLTGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIE 75 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QA++ IG + +I Sbjct: 76 KLNTTLGSVSGQIDNSQSLQAANLIGHGVMIPGTTI 111 >gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1] Length = 231 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120] Length = 231 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + ++ Sbjct: 92 ASNLIGHGVMIPGTTV 107 >gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1] gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1] Length = 230 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + Sbjct: 12 NTGVQSTSSSTSLTGSSAADLQSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + + QA++ IG + ++ Sbjct: 72 EKLNTTLGSISGQIDNGQSLQATALIGHGVMIPGTTV 108 >gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 279 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + + D FLK+++ QIK+QDPT P+ + Q+ ++N ++QE+ + Sbjct: 74 NNSNNLQSLTDNFLKMILVQIKNQDPTHPIDNNHLTTQMTQMHTALGIEKLNKSIQEIKQ 133 Query: 76 SNNLAQA---SSYIGKNITNADGSI 97 + N +Q S++IGK + I Sbjct: 134 TMNNSQYINLSNWIGKTVMIEGNPI 158 >gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 228 Score = 70.8 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73 S + L Q+ F LL Q+ +QDP++P+ + VAQ+ F+ + Q+N + Sbjct: 23 ADDSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82 Query: 74 -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + SN QASS IG+ + + G V + G++ + +++T + T I I N Sbjct: 83 SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTT-TLNTKITIEN 135 >gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB] gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB] Length = 224 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S + + Q+ FL +L+TQ+K+QDPT PM S+ QLA + + ++N+T Sbjct: 17 SSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTT 76 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L + + ++ Q+S+ IG + G I Sbjct: 77 LGSISGQINTSQSLQSSTLIGHGVMVNGGQI 107 >gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 241 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L Sbjct: 30 QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLN 89 Query: 74 --LKSNNLAQASSYIGKNITNADGS 96 + SN QASS +G+++ + + Sbjct: 90 SAMTSNQALQASSLVGQDVLIPNST 114 >gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075] Length = 282 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 3/76 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79 LGQDAFL + + Q+ +Q+P +PM +E AQLA FSQ+E+ Q+ +++ +L S + Sbjct: 28 LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87 Query: 80 AQASSYIGKNITNADG 95 + A Y+GK +T + Sbjct: 88 SVALGYLGKEVTVSGN 103 >gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217] gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217] Length = 220 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 ++ + T + ++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E Sbjct: 9 SQGSHTANVLQSPGNDAASLKNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLE 68 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M ++++ + Q++S IGK+ T ++ Sbjct: 69 YMRKNQSSQMVMMENLGIVQSASLIGKSATVPASNLQ 105 >gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii Sb227] gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227] gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella flexneri CDC 796-83] gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74] Length = 231 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+ L + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1] gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1] Length = 226 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+ Sbjct: 17 ASAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSS 76 Query: 70 LQELLKSNN---LAQASSYIGKNITNADGSI 97 L +L ++ + AS IG+ IT + Sbjct: 77 LDTILTNSKAASASSASGLIGRTITADGATT 107 >gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter vinelandii DJ] gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ] Length = 222 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 + + +N T + + L ++ F+ LLI Q+++QDP +PM+ +E +QLA + + Sbjct: 8 VVSAINGTTSTTQSASTSDEL-RENFMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNG 66 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL+ + + QA++ +G + + + Sbjct: 67 IEELNATLEGITGQIDETQALQAAALVGHGVLVSGSQV 104 >gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 113 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + L + F+ L++T++ HQDP +PM+ +E Q++ F+ + +N + Sbjct: 17 SATPQEPVDQGLEMEDFMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFT 76 Query: 72 ELLKSNNLAQASSYIGKNITNADG 95 L S +L ++ G+ A G Sbjct: 77 GLSSSMHLRSGAT--GRQFVGAPG 98 >gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36] gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36] Length = 237 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 11/110 (10%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 E + S+K LGQ+ F LL ++ QDP +P++ SE VAQ+A F+ + M S Sbjct: 24 AAEQAAESSRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKF 83 Query: 71 QEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109 ++L + SN QASS +G + A S+SG + Q + Sbjct: 84 EQLTTIMSSNQALQASSLVGTKVLAPASTAFLSAGESVSGRIELPQNAPN 133 >gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516] Length = 183 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 9/98 (9%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L Q+K+QDP P+++++ QLA FSQ+EQ V N L L L + L Q + ++G Sbjct: 1 MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60 Query: 88 KN------ITNADGSISGVVNAIQVSSTGLTAITVDNT 119 + ++ +I VV + + + +N Sbjct: 61 REARVAAAVSYVGTAIDVVVKPAEGADLAYIVLRDENG 98 >gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023] Length = 140 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPMTYVTEIN 140 >gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens QYMF] Length = 134 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 K K+ L +DAFLKLL+TQ+ +QDP PM+ E ++Q+A FS +EQ +N L++ Sbjct: 17 NEKKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLKD 75 >gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella piezotolerans WP3] gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3] Length = 267 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + + + L Q+ F LL Q+ QDP +P+ + + Q+A FS ++ ++N Sbjct: 55 PAENSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEE 114 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L L S+ QAS +G+ + +G V+A + + + + ++ + Sbjct: 115 IVNLNALTTSSQALQASGLVGQKVLIPSD--TGYVSAEEPNIKAIVSTPEAIKDLTVR 170 >gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi HY01] Length = 228 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 27 SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 Query: 72 E---LLKSNNLAQASSYIGKNITNADGSIS 98 LL + + + +G+ + + Sbjct: 87 NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116 >gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565] gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565] Length = 246 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ L L+ Sbjct: 25 PKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLMT 84 Query: 76 SNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ +GSISGVV + ITV++ + Sbjct: 85 SSQALQASALVGQNVLLPSNIGYLEKEGSISGVVAVGVENKYSNVKITVEDEK 137 >gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380] Length = 218 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 15/131 (11%) Query: 1 MEINTEVNPTQQEFSK-----SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M IN + + + + F+ LL+ QI++QDP P +E V+Q+A Sbjct: 1 MNINENKSLSGNSGNSLLPAGDTITGDQLNNQFMTLLVAQIQNQDPLNPTDGTEFVSQMA 60 Query: 56 VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSI-------SGVVNAIQ 105 SQ++ + M L+ ++ ++ +G+N+ G+I SG + Q Sbjct: 61 QLSQVQSTENMAKLLKSNTVQMEKMQAMATANLVGQNVMVESGTIELDNKKQSGRLTLQQ 120 Query: 106 VSSTGLTAITV 116 +S + +T Sbjct: 121 AASDVVVYLTD 131 >gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua Clip11262] gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262] gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378] Length = 140 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 7/133 (5%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + S KTLG+D F+KL +T +++QDP+ P+ +E ++Q+A S MEQ Sbjct: 8 SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117 M + + +L +++ L A ++IGK+ ++ ISG V ++Q ++ G+ D Sbjct: 68 NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127 Query: 118 NTEIPITTGIRIS 130 ++ +P+T I+ Sbjct: 128 DSLVPMTYVTEIN 140 >gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae Cit 7] Length = 229 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT +K+ S TLG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPT---PTKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC BAA-1116] gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116] Length = 228 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 27 SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 Query: 72 E---LLKSNNLAQASSYIGKNITNADGSIS 98 LL + + + +G+ + + Sbjct: 87 NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116 >gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana ATCC 700345] gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345] Length = 270 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 ++ + + L Q+ F LL Q+ QDP +P++ + + Q+A FS ++ ++N Sbjct: 58 PEENPIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEE 117 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSIS 98 L L S+ QAS +G+ + + Sbjct: 118 IINLNALTSSSQALQASGLVGQKVLIPSDTAH 149 >gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter pylori India7] Length = 306 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58] Length = 219 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + ++ + T+ Q +FLKLL Q+++QDP EP+ +E V+Q+A + Sbjct: 10 SAGLSVYNPNATVGTGSATMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGI 69 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLT 112 +MN+ L + L L A+S+IGK+ + +A G +G V+ ++ Sbjct: 70 AEMNANLASIKQELTGTRLGDAASWIGKSMLVQSNVAVPDASGYYAGQVSFADATNGATV 129 Query: 113 AITVDNTEI 121 + + + Sbjct: 130 DLVDGSGNV 138 >gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio furnissii CIP 102972] Length = 234 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ V + + + + + + F+ L++ Q+++QDP P ++ V QLA F+Q+ Sbjct: 10 VDTRVTVQSASTKTTTNANSTSSLYNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQV 69 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + + M S L ++ + + + +G++++ ++ + G +T Sbjct: 70 QSTDNMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEG---TYNGSIELTSS 126 Query: 118 NTEIPITTGIRISN 131 + + + N Sbjct: 127 SNTVTLELVDEAGN 140 >gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp. salmonicida A449] Length = 242 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELL 74 KK L Q +FLKLL Q+ +QDP +P+ ++ ++Q+ S E +++ L L+ Sbjct: 23 APKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLM 82 Query: 75 KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120 S+ QAS+ +G+N+ +GSI GVV + ITV++ + Sbjct: 83 TSSQALQASALVGQNVLLQSNVGFLENEGSIGGVVAVGVENKYTSVKITVEDEK 136 >gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001] gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001] Length = 223 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L Sbjct: 16 AAATADTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLD 75 Query: 72 ELLKSNN---LAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEI 121 +L ++ + AS IG+ IT ADG + + + ++ + I + + Sbjct: 76 TILTNSKAASASSASGLIGRTITADGASTDLADGKATWTLTPERAAAKAVVTIKSSDGTV 135 Query: 122 PITTGIR 128 T Sbjct: 136 VATKTTT 142 >gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli E24377A] gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A] Length = 231 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMILGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni 1336] Length = 292 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 TL +DAFLKLL+ +++HQDPT+PM + + + Q + S +E N+T+Q+++++ Sbjct: 43 PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETME 102 Query: 79 LAQAS----------SYIGKNITNADGSI 97 S IGK T + + Sbjct: 103 KLSNSFSTSMSTAAVGAIGKMATVNENKV 131 >gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales bacterium TW-7] Length = 226 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + + L Q+ F LL Q+ QDP++P + +AQ+ F+ E +NS + L Sbjct: 23 TTTEEQSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESL 82 Query: 74 ---LKSNNLAQASSYIGKNITNADGSI 97 + SN+ QAS+ +GK S+ Sbjct: 83 AASMTSNSALQASTLVGKQALLESDSL 109 >gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586] gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586] Length = 223 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + ++ Sbjct: 91 AASLIGHGVLVPGSTV 106 >gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1] gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1] Length = 231 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGYGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium extorquens DM4] gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens DM4] Length = 226 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 10/127 (7%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L Sbjct: 19 AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78 Query: 72 ELLKSNN---LAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVDNTEI 121 +L ++ + AS IG+ IT G + + + ++ + + + + Sbjct: 79 TILTNSKAASASSASGLIGRTITADGAATDLTNGKATWTLTPDRAAARAVITLKASDGTV 138 Query: 122 PITTGIR 128 T Sbjct: 139 VATKTTT 145 >gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus 525.92] gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92] Length = 235 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + + L +DAF+KLL+T++++QDPT PM + + Q + + +E NST++ Sbjct: 28 TGTTGANPNSQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMR 87 Query: 72 EL---LKSNNLAQASSYIGKNITNADGSI 97 +L L+SN A A S +GK ++ ++ Sbjct: 88 QLVAQLQSNANAYAISALGKMVSTGSNAV 116 >gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi 1DA3] Length = 228 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + T Q+ F+ L++ QI++QDP P+ +E V+QLA FSQ++ + M+ +Q Sbjct: 27 SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86 Query: 72 E---LLKSNNLAQASSYIGKNITNADGSIS 98 LL + + + +G+ + + Sbjct: 87 NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116 >gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae B728a] gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae B728a] gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter canadensis MIT 98-5491] Length = 356 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 40/71 (56%) Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73 + LG +AF+KL + Q+K+QDPT PM+ E + Q A +Q+E QM + ++++ Sbjct: 96 AEEEDDNNGLGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 155 Query: 74 LKSNNLAQASS 84 + Q ++ Sbjct: 156 TTTMQSMQETN 166 >gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27] gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27] Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14] gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14] Length = 241 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L Sbjct: 30 QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLN 89 Query: 74 --LKSNNLAQASSYIGKNITNADGS 96 + SN QASS +G+++ + + Sbjct: 90 SAMTSNQALQASSLVGQDVLIPNST 114 >gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter pylori Lithuania75] Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter turicensis z3032] gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis z3032] Length = 202 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 + S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + Sbjct: 2 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 61 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 + ++ AS+ IG + +I Sbjct: 62 IDNSQSLAASALIGHGVMIPGSTI 85 >gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTPTATNSTGT---LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ S + Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110 >gi|163789643|ref|ZP_02184081.1| flagellar hook assembly protein [Carnobacterium sp. AT7] gi|159875175|gb|EDP69241.1| flagellar hook assembly protein [Carnobacterium sp. AT7] Length = 143 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 10/134 (7%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQD------PTEPMKASEQVAQLAVFSQM 60 + + S K L + FL+++ IK + ++ +AQLA F+ + Sbjct: 9 MGSIKNVSSTEKKNNELATEDFLQIMAASIKTPSLPGESGGSGGGGETDYLAQLAQFNTL 68 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVD 117 +Q ++ TL + Q S +GK + A G ++G V+ ++ G I V Sbjct: 69 DQLTTVSETLNMSVLMTQQQQGLSLLGKEVKVAGAESGFVNGTVDKVKF-DKGYATIQVG 127 Query: 118 NTEIPITTGIRISN 131 + + + + + Sbjct: 128 GKDYALNDILEVGD 141 >gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter pylori Cuz20] Length = 319 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp. W3-18-1] gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1] Length = 253 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNKE 100 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QA+ +G+ + + +G V++ S G+ + T I + Sbjct: 101 IVNLNSVMTSSQALQATGLVGRKVLLP--TDTGYVSSENPSMKGVISTTEKIPVINVR 156 >gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella putrefaciens CN-32] gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32] gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200] Length = 253 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68 + + L Q+ F LL Q+ QDP +P+ + +AQ+A FS ++ ++N Sbjct: 41 PTESIVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNKE 100 Query: 69 --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 L ++ S+ QAS +G+ + + +G V++ S G+ + T I + Sbjct: 101 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYVSSENPSMKGVISTTEKIPVINVR 156 >gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter acinonychis str. Sheeba] gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str. Sheeba] Length = 292 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter pylori B38] gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38] Length = 306 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter sakazakii ATCC BAA-894] gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 + S + Q +FL LL+ Q+K+QDPT PM+ +E QLA S + ++N+TL + Sbjct: 26 TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 85 Query: 74 LKSNNLAQASSYIGKNITNADGSI 97 + ++ AS+ IG + +I Sbjct: 86 IDNSQSLAASALIGHGVMIPGSTI 109 >gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp. SKA34] Length = 241 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 + K L QD FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN L Sbjct: 30 QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLN 89 Query: 74 --LKSNNLAQASSYIGKNITNADGS 96 + SN QASS +G+++ + + Sbjct: 90 SAMTSNQALQASSLVGQDVLIPNST 114 >gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. mori str. 301020] gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 228 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+DAFL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 15 LNTLQNPTPTATNSTGT---LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ S + Sbjct: 72 MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110 >gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34] Length = 222 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + Q + Q+ FL +L+TQ+ +QDP P+ S+ +QLA S + Sbjct: 9 SSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGL 68 Query: 64 VQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120 MN+T+ +LL+ + +++ IGK + +A+ VS I VD Sbjct: 69 QTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPG-------SAVSVSGGVPGQIGVDIPS 121 Query: 121 IPITTGIRISN 131 + +++ + Sbjct: 122 TADSVTVQVLD 132 >gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha JMP134] gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134] Length = 226 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + Q FLK+L+TQ+ +QDP PM ++ +QLA S + MNSTL Sbjct: 20 NAALQSGSASAADLQSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTL 79 Query: 71 QELLKSNNLAQ---ASSYIGKNITNADGSIS 98 +LL + ++ +++ IG+ + S Sbjct: 80 TQLLNQTSASRAMDSAALIGRTVMVPGSQFS 110 >gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter pylori 26695] gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori 26695] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128] gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8] Length = 341 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601] gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601] Length = 145 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 7/128 (5%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + +L +D F+KL +T +++QDP+ P+ ++ ++Q++ + MEQ M+S + Sbjct: 18 DSNALTNAATNSLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAV 77 Query: 71 QELLKSNNLAQASSYIG------KNITNADGSISGVVNAIQVSSTGLTA-ITVDNTEIPI 123 +L + S +G K + +SG+V +IQ ++ G+ + ++T +P+ Sbjct: 78 NKLSDQAQSSAMQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPL 137 Query: 124 TTGIRISN 131 T ++N Sbjct: 138 TYITEVNN 145 >gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75] Length = 231 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q +FL LL+ Q+K+QDPT PM+ +E +QLA+ S + ++N+TL + + ++ Q Sbjct: 32 QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 AS+ IG + ++ + + + T T V+ + I++ Sbjct: 92 ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141 >gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A] Length = 316 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter pylori F16] Length = 311 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_AG0C1] Length = 311 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio brasiliensis LMG 20546] Length = 226 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 4/101 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + S +L + F+ L++ QI++QDP P+ +E V+QLA FSQ+ Sbjct: 15 LDTSGAQQGISGNPLDMNSASSLE-NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQV 73 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + + M++ +Q LL + + + +G+ + + Sbjct: 74 QSTENMSTMMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 114 >gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83] Length = 319 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132] gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132] Length = 225 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + ++S +L D F+ LL T++++QDPTEP+ ++ V Q+ +SQ+EQ Sbjct: 11 SLLASYTDTTTTTESATSLTSDDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLT 70 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 +MN + L L + ++ Y+GK + +I+ + + Sbjct: 71 EMNEKMDTLTDALDAQGISSGLDYLGKEVEADGYTINKDGDDVS 114 >gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum CM4] Length = 226 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L Sbjct: 19 AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78 Query: 72 ELLKSNN---LAQASSYIGKNITNADGSI 97 +L ++ + AS IG+ IT + Sbjct: 79 TILTNSKAASASSASGLIGRTITADGATT 107 >gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter pylori Gambia94/24] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter pylori Shi470] Length = 324 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D] gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J] gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D] Length = 215 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 50/94 (53%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T + S + T Q+ F++LL+ Q+++QDP PM S+ +QLA + + Sbjct: 7 TSTPSTNTSNNLSITSGTDLQNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQ 66 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 Q+N+T+ + N QASS IG+ + +++ Sbjct: 67 QLNTTMSSMATQNAATQASSLIGRTVQVPSSTLT 100 >gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis HS1] gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis HS5] gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis HS1] Length = 446 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 45/83 (54%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + K L +DAF+KL + Q+K+QDPT PM+ + ++Q A SQ+E Sbjct: 19 EVTGAKAAMEKKKHEPKVANGLNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVE 78 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + ++E+ + + ++ Sbjct: 79 MQEENKKAMKEVADAMQSTKETN 101 >gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms : FlgD flaV, fla FIV, fla FVI) [Methylobacterium extorquens AM1] Length = 226 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 10/127 (7%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71 + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ NS+L Sbjct: 19 AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78 Query: 72 ELLKSNN---LAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVDNTEI 121 +L ++ + AS IG+ IT G + + + ++ + + + + Sbjct: 79 TILTNSKAASASSASGLIGRTITADGAATDLTNGKATWTLTPDRAAARAVITLKASDGTV 138 Query: 122 PITTGIR 128 T Sbjct: 139 VATKTTT 145 >gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2] Length = 223 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%) Query: 1 MEINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M + T N T L +DAF++L + Q++ QDPT+PM + + Q A S Sbjct: 1 MAVTTINNNVTTSGNDFVYNPNSQLDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLS 60 Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGK 88 ME + M +TL L L+ + + S IGK Sbjct: 61 TMEMNQNMQTTLDNLANTLQQTSSLNSISAIGK 93 >gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter pylori Sat464] Length = 309 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AFLKL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium violaceum ATCC 12472] gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 225 Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + + + K+ G D F+ LL+ QI++Q P +P S+ V+QLA SQM+ + Sbjct: 15 NQQGGEQKVAPAAGKNGAQPGNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQST 74 Query: 64 VQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI 97 M LQ Q + +GK + I Sbjct: 75 QDMLKQLQSQGAMLRELQGVALGAQVGKPVLLQTDRI 111 >gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688] gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688] Length = 218 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + S S S + QD F+ LLITQ+K QDP PM ++ +QLA S + Sbjct: 6 NDLLTTMNTRKSSSGSSASDVQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 ++N+T++ + ++S+ QAS+ IG+ + S++ Sbjct: 66 DKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103 >gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella longbeachae D-4968] gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella longbeachae NSW150] Length = 224 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 S KK + FL ++ QI++QD + E ++QLA F+ + + M +LQ++ Sbjct: 21 SPLKKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTS 80 Query: 74 LKSNNLAQASSYIGKNITNADG 95 L+SN QAS+ +G+ + Sbjct: 81 LQSNQALQASALVGRKVLVETD 102 >gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter pylori P12] gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12] Length = 339 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter pylori HPAG1] gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1] Length = 327 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya dadantii 3937] Length = 223 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + + Sbjct: 91 AASLIGHGVLVPGTKV 106 >gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter pylori F32] Length = 329 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter pylori PeCan4] Length = 306 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|257866384|ref|ZP_05646037.1| predicted protein [Enterococcus casseliflavus EC30] gi|257873100|ref|ZP_05652753.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800342|gb|EEV29370.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807264|gb|EEV36086.1| predicted protein [Enterococcus casseliflavus EC10] Length = 143 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSV 64 +++K + D FLK+L + + + ++ ++QL F+ +E Sbjct: 13 ANTSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLN 72 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 +++ TL + QA S I K +T DG ++SG + ++ + G I V+ E Sbjct: 73 ELSETLTTSVILQQQQQAFSLINKQVTLMDGIETLSGTIEKVRFA-NGYATIVVNGKEYS 131 Query: 123 ITTGIRIS 130 ++ I Sbjct: 132 MSAIQEIG 139 >gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638] Length = 226 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 10/112 (8%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNL 79 L Q FL LL TQ+++QDPT P + + Q+ ++ +++ V N L+ ++ Sbjct: 30 LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89 Query: 80 AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + IG+ + GS S V T +T+D + GI I + Sbjct: 90 LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134 >gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter pylori SouthAfrica7] Length = 382 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 45/83 (54%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + + L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPQIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB] gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB] Length = 229 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81 QD+FL +L TQ+K+QDP PM ++ +QLA S +E +N+TL LL S + Q Sbjct: 37 QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQALQ 96 Query: 82 ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 A+ IG + SG+ + +S G+T + N+ + Sbjct: 97 AAGAIGSQVLVEG---SGLALSSGISQGGVTLGSAANSVV 133 >gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp. MED121] Length = 230 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 10/120 (8%) Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73 +K SK D F+ L I Q+K QDPT+P ++ V+Q+A S +E+ +++ L+ + Sbjct: 30 AKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEELSTISTQLESMT 89 Query: 74 --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 L S+ AS+ +G+ I + S + G I + E+ ++T + I N Sbjct: 90 SALTSSQAISASTLVGQKIMANTNTAS-------LDEGGTVPIKMTIPEVSLSTTLEIRN 142 >gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter pylori SJM180] Length = 346 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617] Length = 224 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 92 ASTLIGHGVMLNGTQI 107 >gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC 100599] gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 310 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 14/137 (10%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N + P K + L Q+AF+KL++ Q+KHQDP PM S+ + Q ++ + +E+ Sbjct: 11 NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70 Query: 64 VQMNSTLQELLKSN-NLAQASSYIGKNITNA------------DGSISGVVNAIQVSSTG 110 +M + +++ S L + +G+ + + GV++A+ + Sbjct: 71 TKMTTLMEQSNNSMVTLDKYEKLVGRTASYSLTTKDEMTGETKTEKKEGVLDAVYMDQGK 130 Query: 111 LTAITVDNTE-IPITTG 126 + + IP+ Sbjct: 131 IYFRIAGESTPIPLADV 147 >gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia solanacearum CMR15] Length = 134 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 48/87 (55%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + + S +L FLK+L+TQ+ +QDP +PM + +AQ+A F+ + QS Sbjct: 2 TIAAASSATGTSSSQVNSLNMQDFLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQ 61 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNIT 91 QMNS ++ L+ + Q+ IG+ + Sbjct: 62 QMNSNIETLVSNQASLQSVGLIGRTVD 88 >gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d] Length = 316 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter pylori 908] gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2018] gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter pylori 2017] Length = 325 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM 12163] Length = 226 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 34 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 94 ASTLIGHGVMLNGTQI 109 >gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae Ech1591] gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591] Length = 223 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM ++ V+QLA + + ++N+TL + + SN Q Sbjct: 31 QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90 Query: 82 ASSYIGKNITNADGSI 97 A+S IG + ++ Sbjct: 91 AASLIGHGVLVPGSTV 106 >gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter pylori J99] gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 363 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter pylori 52] Length = 354 Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ V T S + S + Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NSGVASTSSGSSLTGSSASDLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 ++N+TL + + ++ QAS+ IG + +I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQASTLIGHGVMIPGTTI 108 >gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37] gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37] Length = 188 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIG 87 +L Q+++QDP P+ ++E QLA FS +EQ VQ N L+ + + N+L + +IG Sbjct: 1 MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60 Query: 88 KNITNADGSISGVVNAIQVSSTGLTAIT 115 G+V A + Sbjct: 61 ME---------GLVRAPAMFDGVAPVTI 79 >gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter pylori F57] Length = 321 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4] Length = 228 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 8/105 (7%) Query: 2 EINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56 + + + S + + ++ F+ L++ QI++QDP P+ +E V+QLA Sbjct: 12 DASVATTTSGDTGGISANPSDMNSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQ 71 Query: 57 FSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 FSQ++ + M +Q LL + + + +G+ + + Sbjct: 72 FSQVQSTENMAMLMQNSMVLLDNMQVLSTAGLVGQTVYVSANEFE 116 >gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2] Length = 229 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 +++ L Q+ F +L Q+ +QDPT+P+ + VAQ+ F+ + Q+N + Sbjct: 25 DGTEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAAS 84 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 + SN QASS IG+N+ + G V + + G++ + V+ + Sbjct: 85 MTSNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVNEQSV 127 >gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 184 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSY 85 +KLL+ Q+ +QDP PM ++ +Q+A + + ++N+T++ + S + Q +S Sbjct: 1 MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60 Query: 86 IGKNITNADGSIS 98 +G + G++S Sbjct: 61 VGHGVLVESGTLS 73 >gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 230 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + + Sbjct: 15 NSSSGTNTNATSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N+TL + + S+ QASS IG + ++ Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109 >gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae Ep1/96] gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia pyrifoliae Ep1/96] Length = 224 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 32 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 92 ASTLIGHGVMLNGTQI 107 >gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10] Length = 324 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVANAMKSNKETN 89 >gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909] Length = 230 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + + Sbjct: 15 TNATGANSTTGSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N+TL + + S+ QASS IG + ++ Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTTV 109 >gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. syringae FF5] gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +NT NPT + + + LG+D+FL+LL+TQ+K+Q+P +P ++ VAQLA FS +E Sbjct: 16 LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72 Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98 + ST+ + S+ QASS +G+++ S S Sbjct: 73 MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111 >gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus communis] gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus communis] Length = 222 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S S QD F+ LL+TQ+K+QDP PM ++ +Q+A + + ++N T Sbjct: 16 NSVNTRNSASTTDETQDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKLNET 75 Query: 70 LQELLKSNNLAQA---SSYIGKNITNADGSIS 98 + L+ S L Q+ +S IG+N+ +++ Sbjct: 76 MSSLIGSVQLGQSYQATSMIGRNVLVEGKTLT 107 >gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51] Length = 334 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter pylori F30] Length = 329 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +++ + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGAKAVQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 + T+QE+ + + ++ Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89 >gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. palearctica Y11] gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703] Length = 219 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 4/100 (4%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+N++ + + L + F+ LL+ QI++QDP PM +E V Q+A SQ++ Sbjct: 9 ELNSKSIMSGSRQEVLPNGDELN-NQFMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQVQ 67 Query: 62 QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + M L+ ++ + +G+ + + Sbjct: 68 STENMAKMLKSNTVQMERVQAMATVNLVGQQVMVESDEVE 107 >gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter pullorum MIT 98-5489] Length = 379 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 44/81 (54%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT T + + LG +AF++L + Q+K+QDPT PM+ E + Q A +Q+E Sbjct: 98 NTFPGDTPIIKDEEEDNNGLGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQ 157 Query: 64 VQMNSTLQELLKSNNLAQASS 84 QM + ++++ + Q ++ Sbjct: 158 TQMKNAMEQMTTTMQSMQETN 178 >gi|257871295|ref|ZP_05650948.1| predicted protein [Enterococcus gallinarum EG2] gi|257875997|ref|ZP_05655650.1| predicted protein [Enterococcus casseliflavus EC20] gi|325567525|ref|ZP_08144192.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC 12755] gi|257805459|gb|EEV34281.1| predicted protein [Enterococcus gallinarum EG2] gi|257810163|gb|EEV38983.1| predicted protein [Enterococcus casseliflavus EC20] gi|325158958|gb|EGC71104.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC 12755] Length = 143 Score = 67.8 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSV 64 +++K + D FLK+L + + + ++ ++QL F+ +E Sbjct: 13 ANTSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLN 72 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122 +++ TL + QA S I K +T DG ++SG + ++ + G I V+ E Sbjct: 73 ELSETLTTSVILQQQQQAFSLINKQVTLMDGTETLSGTIEKVRFA-NGYATIVVNGKEYS 131 Query: 123 ITTGIRIS 130 ++ I Sbjct: 132 MSAIQEIG 139 >gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ] gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ] Length = 223 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 23 LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79 + DAFLKL I QI++QDP P ++ ++Q++ +Q+EQS + L LL + + Sbjct: 27 MDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQSNSLA 86 Query: 80 AQASSYIGKNITNADGSI 97 + IGK+I S+ Sbjct: 87 LSSVGLIGKDIVALGDSL 104 >gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia thailandensis E264] Length = 278 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 46 SGASSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 105 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 106 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 142 >gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp. B510] Length = 251 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E + Q+ + + FL +L TQ+K+QDP +P+ ++ QL F+ +E Sbjct: 33 ETSKTPQTDAQKTASATKGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVE 92 Query: 62 QSVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS 98 Q++ NS L +L++ + + +Y+G+ + + Sbjct: 93 QNIGTNSRLDKLVQLQSAGTASTNLAYLGRTVAFQGDTFQ 132 >gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas mendocina ymp] gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp] Length = 225 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + + + S T ++ FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S + Sbjct: 21 KQAVNVSDATQLENNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKS 80 Query: 73 ---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LL + A+ +G+ + A + + ++ A + + G++ Sbjct: 81 NLVLLDNLQTLTAAGLVGQEVKVATEKLELGADKVKGEVNLEHAAGKLTLVVTDSNGVK 139 >gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH] gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH] Length = 223 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 8/112 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75 L +DAF+KL + +++ QDPT+PM + + Q A S ME + M +L L L Sbjct: 21 PDSQLDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNLSNVLS 80 Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 + + S IGK ++ + + +I I Sbjct: 81 TTSQFSTLSAIGKMADTGYRYVN-----VTDDDNSVNFDLYFGDDIASGNVI 127 >gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M + + T + + Q+ FL LL+ Q+K+QDP PM S+ +Q+A S + Sbjct: 12 MNGTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTV 71 Query: 61 EQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLT 112 Q+NSTL L+ S+ +++ IG ++ S+ + +S Sbjct: 72 SGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDV 126 >gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1] Length = 221 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 6/132 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 Q + ++ LG+ FLKLL+ Q+++Q+P +P ++ +QLA F+ +EQ Sbjct: 5 TAATASGQAAQTTRTTQNDLGKKDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQ 64 Query: 63 SVQMNSTLQELLKSNN-----LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 N+ LQ+L+ +++ + +SY+GKN+T I+ A S Sbjct: 65 QTSSNALLQQLVDASSTQKATSSNGASYLGKNVTVQQDQINYTGTASNFSVVTDHPAAQA 124 Query: 118 NTEIPITTGIRI 129 + +TG + Sbjct: 125 QITVSDSTGTPV 136 >gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 191 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87 +L+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + ++ QASS IG Sbjct: 1 MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60 Query: 88 KNITNADGSI 97 + + ++ Sbjct: 61 RGVMVPGTNV 70 >gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum ATCC 824] gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum EA 2018] Length = 239 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 I + TLGQDAFLK+LI ++ HQDPT +++ +AQLA FS +EQ Sbjct: 16 ITENSKTAGGTQIVRNAGNTLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQ 75 Query: 63 SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGL 111 +N T+ S+ + + K G V + + + Sbjct: 76 MTNLNRTMTFSGASSLMGGTVTL--KQYDPDGVPYRGEVQKVTKNGDTI 122 >gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 215 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T P + ++ D FLKLL TQ+++QDP +PM+ SE QL +SQ+EQS+ Sbjct: 2 TSGVPGNGTGGAAGAELNANFDMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSI 61 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96 Q + L+++ L + ++AQ+++++G+ + Sbjct: 62 QQTAALKDILSALSTQDIAQSANFLGQRAELDSST 96 >gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas mendocina NK-01] Length = 225 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 13 EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + S + S T ++ FL L++ QI++QDPT+P+ ++E + Q A SQ++ M S + Sbjct: 21 KQSVNVSDATQLENNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKS 80 Query: 73 ---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128 LL + A+ +G+ + A + + ++ A + + G++ Sbjct: 81 NLVLLDNLQTLTAAGLVGQEVKVATEQLELGTDKVKGELNLEHAAGKLALVVTDSNGVK 139 >gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969] Length = 230 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + S S Q++FL LL+ Q+K+QDPT PM+ +E QLA + + + Sbjct: 15 NSTSGTNSTAASGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +N+TL + + S+ QASS IG + ++ Sbjct: 75 LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109 >gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1] Length = 220 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 QD FL LL+TQ+K+QDP PM ++ +Q+A S + Q+NST+Q L + ++ Q Sbjct: 28 QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87 Query: 82 ASSYIGKNITNADGSI 97 A+S IG I Sbjct: 88 ATSMIGHAALVPGAQI 103 >gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGTQI 106 >gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46] gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46] Length = 233 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T T+ + + + FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ + Sbjct: 10 TGSAGTKTNTASDSATIAGNFNQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQL 69 Query: 65 QMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96 + N L ++ K+ + A+ +GK +T + Sbjct: 70 KTNDRLDTMVAASKAATASSAAGLVGKTVTADGAT 104 >gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1] gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1] Length = 274 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K+ + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+ Sbjct: 24 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 83 Query: 75 KSNNLAQASSYIGKNITNAD 94 ++ +Q SY+G+ + + Sbjct: 84 QTAQTSQGISYLGQTVEVSG 103 >gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus coahuilensis m4-4] Length = 94 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 50/85 (58%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + I++ + + + + + LGQDAF+K+L+ ++++QDP PM+ + +AQLA FSQ+ Sbjct: 3 ISIDSNLLLSTYQNEQRQVDNKLGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQL 62 Query: 61 EQSVQMNSTLQELLKSNNLAQASSY 85 E+ M+ +L + Q S+ Sbjct: 63 EELTGMSDSLDSMNAIQQQNQLLSF 87 >gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora CFBP1430] gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC 49946] gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora CFBP1430] Length = 223 Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL LL+TQ+K+QDPT PM ++ QLA + + ++N+TL + + S Q Sbjct: 31 QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGTQI 106 >gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter hepaticus ATCC 51449] gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC 51449] Length = 273 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 Q T+ E+ ++ Q ++ Sbjct: 67 MQEQNKKTMVEVAEAMKSTQETN 89 >gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b] gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b] Length = 224 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 3 INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59 +N ++PT S + + Q+ FL +L+TQ+++QDPT PM S+ QLA + Sbjct: 7 VNENLDPTVLSSSSSSSTGNSAEDLQNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINT 66 Query: 60 MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 + ++N+TL + + ++ Q+++ IG + I Sbjct: 67 LSGIEKLNTTLGSISGQISTSQNLQSTTLIGHGVMVDGSQI 107 >gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551] gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551] gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum IPO1609] Length = 218 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 42/69 (60%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNITNA 93 IG+ + Sbjct: 90 LIGRTVEVP 98 >gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48] Length = 224 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQA 82 + FL LL QIK+QDP PM +++ QL ++ +EQ ++ N L+ L L + N+A + Sbjct: 29 YETFLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASS 88 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + IGK + + + + + E+ G + Sbjct: 89 VNMIGKTAIADIDTQTFKDKPLTWHYELASTASQVGVEVLDADGKTV 135 >gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CFBP2957] Length = 218 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+TL + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89 Query: 85 YIGKNITNA 93 IG+ + Sbjct: 90 LIGRTVEVP 98 >gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 230 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 10/118 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + ++ L S++IGK T+ DG+ +G V +S ++ ++ + Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148 >gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae 12198] gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter mustelae 12198] Length = 279 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 K L +DAF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T++E+ + Sbjct: 23 PKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASA 82 Query: 77 NNLAQASS 84 + S+ Sbjct: 83 MQSTKESN 90 >gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia thailandensis MSMB43] Length = 268 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 36 SGTNANSNVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 95 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L + ++ QA+ IG N+ ++ Sbjct: 96 AQLNTALTSLSSQITASQQTQAAMLIGSNVLAPGNTV 132 >gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 277 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74 K+ + FL +L TQ+KHQDP PM +++ QL FS +EQ + NS L++L+ Sbjct: 28 KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 87 Query: 75 KSNNLAQASSYIGKNITNAD 94 ++ +Q SY+G+ + A Sbjct: 88 QTAQTSQGISYLGQTVEVAG 107 >gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius LAA1] gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 159 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 11/117 (9%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-------LQEL 73 +L ++ F++LL+TQ+++QDP P+ ++ +AQLA FS +E+ Q+ T +Q L Sbjct: 41 NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100 Query: 74 LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +L A S IG ++T + + G V+++ ++ G I V+ T P+T + Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLTQVV 156 >gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 230 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 10/118 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ AQ+A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + ++ L S++IGK T+ DG+ +G V +S ++ ++ + Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148 >gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060] Length = 228 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 S + + FL LL TQ+++Q+P +P+ ++ QL F+ +EQ Sbjct: 11 TANRTGGSASPSSDAATIAGNFNQFLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQ 70 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96 ++ N L LL K++ A A+ +G+ +T + Sbjct: 71 LKTNDRLDSLLTASKASAAATAAGLVGQTVTADGTT 106 >gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 289 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 57 SGASSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 116 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 117 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 153 >gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum PSI07] Length = 218 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 51/105 (48%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 IG+ + ++S + + I + G + Sbjct: 90 LIGRTVEVPSSTLSLSSSTASFGISVPNGADDAVVTIKNSAGTTV 134 >gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum MolK2] Length = 218 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 52/105 (49%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 IG+ + ++S + + I ++G + Sbjct: 90 LIGRTVEVPSSTLSLSSSTASFGISVPNGADDAVVTIKNSSGTTV 134 >gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6] Length = 176 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 50/109 (45%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + S + K TL ++ KLL Q+ +QD + PM S+ + Q++ + ++ + Sbjct: 19 AATKATSVTTDKNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQMSQMAMVQSLTALTE 78 Query: 69 TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + + + + A+ IGK +T S + +Q S T ++V+ Sbjct: 79 STKSATSMSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVN 127 >gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum GMI1000] gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia solanacearum GMI1000] Length = 221 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 42/69 (60%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 33 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92 Query: 85 YIGKNITNA 93 IG+ + Sbjct: 93 LIGRTVEVP 101 >gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 158 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 35/54 (64%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 +D F+KL + Q+KHQDP EPMK + + Q+A F+ +EQ M ++ ++ K+ Sbjct: 64 DKDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAKNF 117 >gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula marina DSM 3645] Length = 169 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 D FLKL+I ++++QDP EPMK SE + Q+ + + Q+++TL +L N+ A++ Sbjct: 1 MDQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATT 60 Query: 85 YIGKNI---TNADGSISGVVNAIQVSSTG--------LTAITVDNTEIPITTGIRI 129 IG + T+ + GVV Q++ + + + Sbjct: 61 LIGGQVQALTDQGDVVFGVVTGAQITPNDDGVREVFLKVMTDDGIATVKLDDIFTV 116 >gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638] Length = 228 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 32 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 ASS IG + ++ Sbjct: 92 ASSLIGHGVMIPGTNV 107 >gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641] Length = 230 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAISGQIDSSQSLQ 93 Query: 82 ASSYIGKNITNADGSI 97 ASS IG + SI Sbjct: 94 ASSLIGHGVMIPGTSI 109 >gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 230 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 L FL LL TQ+K+QDP P+ ++ A +A FS + Q+N+T+ + Sbjct: 31 KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSD 90 Query: 74 LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + ++ L S++IGK T+ DG+ +G V +S ++ ++ + Sbjct: 91 VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148 >gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236] Length = 230 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q++FL LL+ Q+K+QDPT PM+ +E QLA + + ++N+TL + + S+ Q Sbjct: 34 QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 93 Query: 82 ASSYIGKNITNADGSI 97 ASS IG + +I Sbjct: 94 ASSLIGHGVMIPGTAI 109 >gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification [Ralstonia solanacearum CMR15] Length = 218 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 42/69 (60%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ F++LL+ Q+K+QDP PM S+ +QLA + + Q+N+T+ + + +QASS Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89 Query: 85 YIGKNITNA 93 IG+ + Sbjct: 90 LIGRTVEVP 98 >gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter cinaedi CCUG 18818] Length = 273 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 44/83 (53%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+ +E K ++ L DAF++L + Q+K+QDPT PM+ + + Q A +Q+E Sbjct: 7 EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66 Query: 62 QSVQMNSTLQELLKSNNLAQASS 84 Q T+ E+ ++ Q ++ Sbjct: 67 MQEQNKKTMVEVAEAMKSTQETN 89 >gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 236 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp. (strain APS) gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 236 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM 6946] Length = 229 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL+LL+T+++HQDPT+PM + + + Q A S +E S + L+EL + S Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEELSDQLSANTNFSA 91 Query: 86 IG 87 IG Sbjct: 92 IG 93 >gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 236 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 IN E + Q FL LLI QIK+QDPT+P+K S+ +QLA + Sbjct: 21 INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80 Query: 63 SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97 ++N+T+ + N Q S+ IG+++ + I Sbjct: 81 MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118 >gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii NCTC 11218] Length = 164 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ V + + + + + + F+ L++ Q+++QDP P ++ V QLA F+Q+ Sbjct: 10 VDTRVTVQSASTKTTTNANSTSSLYNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQV 69 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117 + + M S L ++ + + + +G++++ ++ + G +T Sbjct: 70 QSTDNMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEG---TYNGSIELTSS 126 Query: 118 NTEIPITTGIRISN 131 + + + N Sbjct: 127 SNTVTLELVDEAGN 140 >gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LA 80 FL LL TQ+K+Q+P +P+ ++ QL F+ +EQ ++ N++L +L ++ + Sbjct: 28 NFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAAS 87 Query: 81 QASSYIGKNITNADGSI 97 AS IG+ + + Sbjct: 88 SASGLIGRTVVADGATT 104 >gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium violaceum ATCC 12472] Length = 224 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + S + Q+ FL LL Q+ QDP PM S+ +Q+A SQ+ Sbjct: 10 AANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQS 69 Query: 66 MNSTLQELLKSNNLAQAS---SYIGKNITNADGSI 97 +N T+Q+L+ S N +Q+ IG N+ A ++ Sbjct: 70 LNLTMQQLVASQNASQSMMATGMIGNNVLVAGNTL 104 >gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 226 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQ 81 Q FL LL+ Q+K+QDPT+P+K SE +QLA + ++NST + + Q Sbjct: 32 QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNIQ 91 Query: 82 ASSYIGKNITNADGSI 97 SS IG ++ I Sbjct: 92 VSSLIGHHVMIPSSQI 107 >gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens WH6] Length = 241 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 24 TDNSSLGDASKAATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83 Query: 65 QMNS 68 +N Sbjct: 84 TLND 87 >gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp. MED92] Length = 235 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 N T+ S S S+ D F++L+I Q+++QDPT P ++ + Q+A SQ+E Sbjct: 16 NTQNQTKSTQSSSTSQSQEDSDMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESIN 75 Query: 65 QMNSTL----QELLKSNNLAQASSYIGKNITNADGS 96 + T+ Q +L S QASS +G+++ A + Sbjct: 76 NLTQTVQSTSQSMLASQAALQASSMVGQSVYIAGDT 111 >gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602] gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602] Length = 234 Score = 64.7 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQ-----------DAFLKLLITQIKHQDPTEPMKASE 49 M I T +N T + + + +FL LL+ Q+K+QDPT PM S+ Sbjct: 1 MAITTSINDTTDNTTIASTSSGGSSTTGTSSADDLSSSFLTLLVAQLKNQDPTNPMDNSQ 60 Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106 +QLA S + ++N+TL + + S + QASS IG + + +I +V + Sbjct: 61 LTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQASSLIGHGVMVSGSAI--LVGSDTD 118 Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131 + T + TT +S+ Sbjct: 119 GTVSTTPFGFELETASDTTTATVSD 143 >gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM 16294] Length = 220 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 K LG+D F+KLL+ Q+++QDPTEPM + + Q + + +E + + L++L S Sbjct: 23 PKGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLG 82 Query: 79 LAQA---SSYIGKNITNADGSI 97 AQ S IGK +I Sbjct: 83 NAQQFSTISAIGKTADLGSDAI 104 >gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002] gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002] Length = 230 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 + S S S Q+ FL LL TQ+K QDP PM+ +E +Q+A SQ+ Sbjct: 15 NTGNSTSSSSVSASSAEGIQNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLEN 74 Query: 66 MNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98 ++ ++ LL+S A+S +GK+ +++ Sbjct: 75 LSKSINSLLQSQYGTQSLLAASLVGKSAMIDGNTLT 110 >gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter cancerogenus ATCC 35316] Length = 234 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + T + + + + F+KLL+ QI++QDP P +E V QLA +Q++ Sbjct: 11 SDTATTTDSGIAPNDNSAAGMTNLFMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSM 70 Query: 64 VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 M +Q L+ + + +G+ + ++ Sbjct: 71 ENMTVGMQNIGVLMDNLQTLSTGNLVGQKVMVQTDTLQ 108 >gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia ambifaria AMMD] gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD] Length = 248 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 + T+ T + S L Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 17 NLPTDTMNTSNVSTTGTSASDL-QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVS 75 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N++L L L + QA+ IG N+ + Sbjct: 76 GIAQLNTSLTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114 >gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp. TJI49] Length = 229 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 2 NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 61 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ ++ Sbjct: 62 LTSLSTQLAAGQQTQAALLIGSNVLAPGNTV 92 >gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 222 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 DAFL+LLI ++++QDPT P +E + Q+A FS +EQ +N T + L + +L Sbjct: 24 DSDAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLN 83 Query: 81 QASSYIGKNITNADGSIS 98 A S+IG+++ IS Sbjct: 84 SAVSFIGQSVLAQGDDIS 101 >gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula baltica SH 1] Length = 164 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Sbjct: 28 TSSERSAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGAT 87 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSST 109 Q+ +TL +L S L AS IG+ ++ + +GVV+ I V + Sbjct: 88 DQLTNTLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 136 >gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia ambifaria MC40-6] gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6] Length = 248 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ + Sbjct: 84 LTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114 >gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47] Length = 153 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + Q S ++ +L D+FLKLLI ++++QDP +P+ ++ V Q+ ++ + Sbjct: 17 TSSERSAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGAT 76 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSST 109 Q+ +TL +L S L AS IG+ ++ + +GVV+ I V + Sbjct: 77 DQLTNTLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 125 >gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 241 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +N + + A F +LL+ Q+K+QDP PM+A++ V Q A SQ+ Sbjct: 6 NVNNVTGVGGSVATPTAGNGEGDVSAMFTRLLVAQVKNQDPLAPMEANQFVTQFAQMSQV 65 Query: 61 EQSVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSIS 98 E + + ++ + +G + + Sbjct: 66 EAMRTLANLSAATARTQESMLVVTLGSQVGSQVRVRSEKVE 106 >gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia xenovorans LB400] gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans LB400] Length = 240 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ + T S S + T Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Sbjct: 26 NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85 Query: 64 VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98 Q+N+TL L + Q S IG + S+S Sbjct: 86 SQLNTTLTSLATQMSAGQQSQAALLIGSTVLAPGSSVS 123 >gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia tasmaniensis Et1/99] gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia tasmaniensis Et1/99] Length = 223 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+K+QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 AS+ IG + I Sbjct: 91 ASTLIGHGVMVNGSQI 106 >gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 1106a] gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a] gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305] gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b] Length = 280 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 48 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655] Length = 280 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 48 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379] Length = 220 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 10/117 (8%) Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77 KS + FL+L I Q+++QDP P A+ + QL+ S +EQS + L LL + Sbjct: 19 KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78 Query: 78 N---LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 N + S+IGK + I T ++ + + T + IS+ Sbjct: 79 NNSLSMGSVSFIGKTVKANGDDIV-------FDGTSSPSLQYNLSSASAATTLTISD 128 >gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 220 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M+ + L F LLI QI++QDP PM AS+ V Q A SQ+ Sbjct: 13 MDAGGPGVLPPGGAQPNDGPSNL----FTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQV 68 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 E + + L L + +G + Sbjct: 69 EAMQTL-ANLTALTAGMQESTLVVTLGAQV 97 >gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10] Length = 248 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ + Sbjct: 84 LTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114 >gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus subsp. fetus 82-40] gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus 82-40] Length = 263 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + + L +DAFLKLL+ ++++QDPTEPM +++ + Q + + +E N Sbjct: 32 NNASGTGTNPYSQLDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKV 91 Query: 70 LQELLKSNN---LAQASSYIGK 88 +++L A S +GK Sbjct: 92 MKQLTTQMQSSLSMTAMSALGK 113 >gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158] Length = 245 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTNNVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ + Sbjct: 84 LTSLSTQLAAGQQTQAALLIGSNVLAPGNGV 114 >gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1] Length = 236 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80 ++ F++L I Q+K+QDPT P + + V+Q+A FS +EQ M+ST+ + L S+ Sbjct: 44 DKNVFMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQAL 103 Query: 81 QASSYIGKNITNADGSIS 98 AS+ +GK++ +IS Sbjct: 104 TASTLVGKSVYVDQDTIS 121 >gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas fluorescens SBW25] gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas fluorescens SBW25] Length = 241 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + + ++LG+DAFL+LL+TQ+K+Q+P P VAQLA FS +E Sbjct: 24 TDNSSVGDAAKSATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83 Query: 65 QMNS 68 +N Sbjct: 84 TLND 87 >gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2] Length = 225 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + + + + S + +LG FL LLITQ+++QDPTEP+ +E V Q+ FSQ+E Sbjct: 11 SLLTASSETADTSTASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLT 70 Query: 65 QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + L E L +++ A SY+GK + + S+S Sbjct: 71 SIEDKLDELTSSLSASSTTSAISYLGKEVEASGYSLS 107 >gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia phymatum STM815] gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815] Length = 237 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + S S + + Q+ FL+LLI Q+K+QDPT PM +S+ +QLA + + Sbjct: 22 MNGAKSASSSSSSSSATSGSDLQNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTG 81 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 Q+NS+L L L +N QA++ I + S S Sbjct: 82 IGQLNSSLTSLASQLTTNQQTQAANLINSTVLAPGDSFS 120 >gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis] Length = 97 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Query: 44 PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVV 101 PM+ ++ VAQ+A F+ +EQ ++ + ++L + ++A + +GK + DGSI SGV+ Sbjct: 3 PMEDTQFVAQMAQFTSLEQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVI 62 Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRIS 130 A + + + VD +T + Sbjct: 63 TA--ATRGEIPQVQVDGKWYDWSTVKTVY 89 >gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia pseudomallei MSHR346] Length = 280 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 48 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTL 144 >gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1] Length = 224 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL +L+TQ+K+QDPT PM S+ QLA + + ++N+TL + + ++ Q Sbjct: 32 QNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 91 Query: 82 ASSYIGKNITNADGSI 97 +S+ IG + G I Sbjct: 92 SSTLIGHGVMVNGGQI 107 >gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia cenocepacia J2315] gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia cenocepacia J2315] Length = 234 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 6 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 65 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N++L L L + QA+ IG N+ S+ Sbjct: 66 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 101 >gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10] gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10] Length = 221 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 ++ + + T + S++ + FL LL Q+K+QDP P+ +++ V QL FS + Sbjct: 2 VDAVSGLGATSPSLANSQTGLADNFEMFLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSV 61 Query: 61 EQSV 64 EQ + Sbjct: 62 EQQI 65 >gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002] Length = 235 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ +N++L L L ++ AQ Sbjct: 42 QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101 Query: 82 ASSYIGKNITNADGSIS 98 ++ IG + S++ Sbjct: 102 SALLIGSTVLAPGNSVT 118 >gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5] Length = 248 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ + Sbjct: 84 LTSLSTQLAAGQQTQAALLIGTNVLAPGNGV 114 >gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia billingiae Eb661] Length = 223 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FL LL+TQ+++QDPT PM S+ QLA + + ++N+TL + + S Q Sbjct: 31 QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 A++ IG + + Sbjct: 91 ATTLIGHGVMVDGTQV 106 >gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1] Length = 240 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ + T S S + T Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Sbjct: 26 NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85 Query: 64 VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98 Q+N+TL L + Q S IG + S+S Sbjct: 86 SQLNTTLTSLATQMSAGQQSQAALLIGSTVLAPGSSVS 123 >gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018] gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22] Length = 226 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME---QSV 64 + + ++ S S +L + FLKL+I Q+K QDPT+P +++ + S + Q + Sbjct: 12 DASGNTYTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMI 71 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNA--IQVSSTGLTAITVDNTEI 121 ++ + +++ A+ IG +I N + SG + + ++ ++ V E+ Sbjct: 72 STLESISTAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVESIENVDGSLIVKGREL 130 >gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 ++S SK FL +L TQ+K+Q+P P +E QL +SQ+EQ + N Sbjct: 14 GKATSTSAESLSKLDENYKLFLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGN 73 Query: 68 STLQELL---KSNNLAQASSYIGKNITNADGS 96 L+ L+ + A +++GK + + Sbjct: 74 QYLENLVLSTNNQTAETALAFVGKEVVYTSDN 105 >gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913] gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913] Length = 217 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 1 MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55 M++N+ V + S FL+LL+ QI +Q+P +PM ++ V+QLA Sbjct: 1 MQVNSAVPSAADATKNTTNIAGNSSADEMSTMFLELLVAQISNQNPLQPMDGTQYVSQLA 60 Query: 56 VFSQMEQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITN--------ADGSISGVVNAI 104 FS +E + + + S + +A++ +G+ + DGS+SG+VN Sbjct: 61 EFSNVESLQSIRQNTADGLDYVSSLAVLEATNMVGQTVDVQASSIALEQDGSVSGMVNLG 120 Query: 105 QVSSTGLTAITVDNTEI 121 + + + + + E+ Sbjct: 121 EAADSVTVQLYNQDGEL 137 >gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia phytofirmans PsJN] gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN] Length = 240 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N+ + T S S + T Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA + + Sbjct: 26 NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85 Query: 64 VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSI 97 Q+N+TL L + Q S IG + S+ Sbjct: 86 SQLNTTLSSLATQMSAGQQSQAALLIGSTVLAPGSSV 122 >gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] Length = 282 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNITNADGSI 97 A+ IG N+ ++ Sbjct: 131 AAMLIGSNVLAPGNTV 146 >gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 282 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q FLKLL+TQ+++QDPT P+ +++ +QLA + + Q+N++L L L + Q Sbjct: 71 QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130 Query: 82 ASSYIGKNITNADGSI 97 A+ IG N+ ++ Sbjct: 131 AAMLIGSNVLAPGNTV 146 >gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 23344] Length = 255 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 26 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 85 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 86 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 122 >gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei SAVP1] gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10229] gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei NCTC 10247] gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei ATCC 23344] gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei SAVP1] gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10229] gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC 10247] gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH] gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU] gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei 2002721280] gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC 10399] gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8 horse 4] gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei PRL-20] Length = 277 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 48 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD1] gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2] gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans CGD2M] Length = 247 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ ++ Sbjct: 84 LTSLSTQLAAGQQTQAALLIGSNVLAPGDTV 114 >gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703] gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703] Length = 225 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ F+ LL+ Q+++QDPT+PM S+ QLA S + ++N+TL + L +N + Q Sbjct: 31 QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90 Query: 82 ASSYIGKNITNADGSIS 98 AS+ IG + SI+ Sbjct: 91 ASTLIGNGVLIEGNSIT 107 >gi|328958278|ref|YP_004375664.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4] gi|328674602|gb|AEB30648.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4] Length = 142 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 11/141 (7%) Query: 1 MEINTE-VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDP------TEPMKASEQVAQ 53 ME +T+ + + S K+ L + FL+++ IK ++ +AQ Sbjct: 1 MEFSTDYMMGSVNNTSTRKTGTELSTEDFLQIMAASIKMPSMPGEGGSGGGGGETDYLAQ 60 Query: 54 LAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTG 110 LA F+ ++Q ++ TL + QA S + K + A G +SG V+ ++ G Sbjct: 61 LAQFNTLDQLTTVSETLNLNVLMTQQQQALSLLNKEVKVAGADSGFVSGTVDKVKFDQ-G 119 Query: 111 LTAITVDNTEIPITTGIRISN 131 I VD + + + + + Sbjct: 120 YATIQVDGKDYTLNDILEVGD 140 >gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM 2831] Length = 228 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74 + ++ FL LL TQ+K+Q+P +PM ++ QL F+ +EQ ++ N L +L Sbjct: 24 NATEIASNFTQFLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSA 83 Query: 75 -KSNNLAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126 +S + A A+SYIGK ++ + GS S +N + +S + + + T Sbjct: 84 SQSASSASATSYIGKTVSADGSASQLSGGSASWTLNPARAASKAVITVLDSKNNVVATQT 143 Query: 127 IRIS 130 +S Sbjct: 144 TALS 147 >gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003] Length = 240 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + Q S Sbjct: 47 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106 Query: 85 ---YIGKNITNADGSIS 98 IG + S+S Sbjct: 107 AALLIGSTVLAPGSSVS 123 >gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia multivorans ATCC 17616] gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC 17616] gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia multivorans ATCC 17616] Length = 247 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ ++ Sbjct: 84 LTSLSTQLAAGQQTQAALLIGSNVLAPGNTV 114 >gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia pseudomallei 1710b] gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 14] gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 9] gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia pseudomallei B7210] gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 7894] gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 112] gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia pseudomallei BCC215] gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e] gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur 52237] gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13] gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576] gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan 9] gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a] Length = 280 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 48 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144 >gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum JL354] Length = 102 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 44/76 (57%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + ++ ++ LGQ FL+LL Q++ QDP EP+ E +AQ+A FS + + Sbjct: 11 TSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMAQFSSLAGTA 70 Query: 65 QMNSTLQELLKSNNLA 80 + N+TL+++++ + Sbjct: 71 ETNTTLEKIVEKLDAL 86 >gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia cenocepacia AU 1054] gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia cenocepacia HI2424] gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054] gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424] Length = 248 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N++L L L + QA+ IG N+ S+ Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 115 >gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia pseudomallei K96243] Length = 283 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 51 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 110 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 111 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 147 >gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 91] Length = 283 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 51 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 110 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 111 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 147 >gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia pseudomallei K96243] Length = 261 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S S + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 29 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 88 Query: 64 VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N+ L L L + QA+ IG N+ ++ Sbjct: 89 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 125 >gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M] gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M] Length = 243 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + Q S Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 85 ---YIGKNITNADGSIS 98 IG + S+S Sbjct: 110 AALLIGSTVLAPGSSVS 126 >gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC BAA-430] Length = 262 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 ++L + Q+K+QDPT PM+ E + Q A +Q+E +M ++++ + Q ++ Sbjct: 1 MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDMTTTMKSMQETN 56 >gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp. 383] gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383] Length = 251 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N++ Sbjct: 24 NTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83 Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97 L L L + QA+ IG N+ ++ Sbjct: 84 LTSLSTQLTAGQQTQAALLIGTNVLAPGNAV 114 >gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103] gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103] gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis AJ13355] Length = 223 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81 Q+ FL +L+TQ+++QDPT PM S+ QLA + + ++N+TL + + ++ Q Sbjct: 31 QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 90 Query: 82 ASSYIGKNITNADGSI 97 +S+ IG + I Sbjct: 91 SSTLIGHGVMVNGSQI 106 >gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001] Length = 243 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 Q+ FL LL+ Q+K+QDPT PM +S+ +QLA + + Q+N+TL L + Q S Sbjct: 50 QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109 Query: 85 ---YIGKNITNADGSIS 98 IG + SIS Sbjct: 110 AALLIGSTVLAPGSSIS 126 >gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970] Length = 187 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 36 IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92 +++QDPT PM ++ +QLA F+ Q+NSTL L+ S A+ ++G+N+ Sbjct: 1 MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNVWI 60 Query: 93 ADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125 S+ + VD + +T Sbjct: 61 EGESVISFADDGNKEFAFAADTDVDKVTVTLTD 93 >gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299] Length = 156 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 61/105 (58%), Gaps = 3/105 (2%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 E+++ + Q+++++ S L + FLKL++ Q+K QDPT+P + + Q S ++ Sbjct: 5 EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64 Query: 62 QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNA 103 ++ M+++++ L + ++L+ A++ I K + + +G++ + Sbjct: 65 TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKS 109 >gi|54307269|ref|YP_128289.1| flagellar basal-body rod modification protein FlgD [Photobacterium profundum SS9] gi|46911689|emb|CAG18487.1| Hypothetical flagellar basal-body rod modification protein FlgD [Photobacterium profundum SS9] Length = 224 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 14/133 (10%) Query: 3 INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 +N + + ++ S+ + + + FL +++ QI++Q+P EP ++ + QL + S + Sbjct: 9 VNQYSHGSTEQNSQQVAGNGMNPSSNQFLTMMVAQIQNQNPLEPADGTQFLTQLGMMSAV 68 Query: 61 EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSS 108 E + + + + + + + QA++ +GK + + I G V Q + Sbjct: 69 ESLEGVKTGMMNMNIGITNLEMLQATNLVGKKVLMEANQGVDVSEGQIIDGRVQFDQPAD 128 Query: 109 TGLTAITVDNTEI 121 T + + ++ Sbjct: 129 TAKVMVYDEEGKV 141 >gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555] gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016] gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555] gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 265 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 2 EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPT--EPMKASEQVAQLAVFSQ 59 + +++ + K + + + FLK+L ++++QDPT ++E ++QLA FS Sbjct: 48 DKSSDTTENGTKIVKKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSA 107 Query: 60 MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 ++Q + +N+T + ++ + + + ++ + I+G V + + + Sbjct: 108 LQQMMNLNNTNKVTTANSLVNKYVTLSDRD--SEGNYITGKVVGVVKDGDDVELKLITG 164 >gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia cenocepacia MC0-3] gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184] gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3] Length = 248 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ T S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 20 TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79 Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 Q+N++L L L + QA+ IG N+ S+ Sbjct: 80 QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 115 >gi|262273530|ref|ZP_06051344.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] gi|262222508|gb|EEY73819.1| flagellar basal-body rod modification protein FlgD [Grimontia hollisae CIP 101886] Length = 223 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 E + + FL +++ Q+++Q+P P ++ + QL + S +E Sbjct: 13 SHQAVASETQVGANGMNPSSNDFLTMMVAQVQNQNPLNPTDGTQYLTQLGMMSAVESLES 72 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNIT 91 + L L + + + QA++ +GK + Sbjct: 73 VKVGLNNLNIGMTNVEMLQATNLVGKKVL 101 >gi|152990376|ref|YP_001356098.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2] gi|151422237|dbj|BAF69741.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2] Length = 220 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 K+ + + ++ FLK+L+ + QDP E ++ + ++E +++ L Sbjct: 22 KNVDQSKMDKEGFLKVLLANFQFQDPFEAQDIAKFIDNTVKLRELEVLNNFETSVNTLAN 81 Query: 76 -SNNLAQASSYIGKNITNADGSI 97 + L A++ IGK + Sbjct: 82 GTQQLLSAANLIGKKVVYTGNET 104 >gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1] Length = 215 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMNSTLQELLK 75 + + FLK+L+ ++ QDP + ++ + +ME + L+E + Sbjct: 22 DNSKMENEDFLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVELLKETNE 81 Query: 76 SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127 +N+L AS IGK + ++ + ++ DN +I T + Sbjct: 82 ANSLLYASGLIGKKVVYEGNQ-----TFVENGRSSVSFRLDDNADIVTVTVM 128 >gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia vietnamiensis G4] gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4] Length = 248 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-- 67 + S + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+N Sbjct: 24 NTNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSS 83 Query: 68 -STLQELLKSNNLAQASSYIGKNITNADGSIS 98 S+L L + QA+ IG N+ +S Sbjct: 84 LSSLSTQLAAGQQTQAALLIGTNVLAPGNDVS 115 >gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5] gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum AIU301] Length = 253 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN--- 78 + + FL +L TQ+++QDPT PM +S+ ++L FSQ+EQ + N +L +LL+ Sbjct: 60 SSNYNDFLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGD 119 Query: 79 LAQASSYIGKNITNADGSI 97 L QASS +G +T + Sbjct: 120 LTQASSMLGSKVTATSSQL 138 >gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia ubonensis Bu] Length = 250 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 N + S + + Q FLKLL+TQ+K+QDPT P+ +S+ +QLA + + Q Sbjct: 24 NTNKVSTTGTLSTTSASDLQSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQ 83 Query: 66 MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 +NS+L L L + QA+ IG N+ + Sbjct: 84 LNSSLTSLSTQLTAGQQTQAAMLIGTNVLAPGNGV 118 >gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri ATCC BAA-895] gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895] Length = 227 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 28 FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84 F++LL+ QI++QDP P +E V+QLA +Q++ M+ + L+ + + Sbjct: 35 FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQSMETMSQLMANSSVLMDNLQTLTTGN 94 Query: 85 YIGKNITNADGSI 97 +G+++ +I Sbjct: 95 LVGQHVMVQTDAI 107 >gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1] Length = 117 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 9 PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 + + +L + FL+L+ Q+ +QDP EP + +AQLA FS +E + Sbjct: 20 NAPSTIRRESAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRA 79 Query: 69 TLQELLKSNNLA 80 TL E+ + Sbjct: 80 TLDEISAKLDAL 91 >gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae BGR1] gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1] Length = 258 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 V+ + + + Q FLKLL+TQ+++QDPT P+ +S+ +QLA + + Q+ Sbjct: 20 VDTMSNNSGVASTSASDLQQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL 79 Query: 67 N---STLQELLKSNNLAQASSYIGKNITNADGSIS 98 N S+L + + QA+ IG N+ ++S Sbjct: 80 NSSLSSLSSQITAGQQTQAALLIGSNVLAPGSTLS 114 >gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256] Length = 100 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 M IN N F + + +GQ FL+L+ Q+ QDP P+ +E VAQ+A FS + Sbjct: 1 MSINGISNNNPV-FHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSL 59 Query: 61 EQSVQMNSTLQELLKSNNLAQA 82 + N+ L ++ + Sbjct: 60 AGISETNTVLAQISEQLAAQTQ 81 >gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q + + + S T ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++ M S Sbjct: 19 QVKRAVNVSDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTSLA 78 Query: 71 QE---LLKSNNLAQASSYIGKNITNA 93 Q L+ + A+ +G+ + A Sbjct: 79 QNNLVLMDNLQTLTAAGLVGQQVRVA 104 >gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994] Length = 224 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 11/116 (9%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73 ++ K +LG+D FLKLL+ ++K+QDPT PM + + ++Q + + +E + N L+ L Sbjct: 24 NEDKSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83 Query: 74 LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121 L S+ S IGK + D S + + + ++G I ++ Sbjct: 84 LTSSMQYSGISAIGKMADTGSNAIVKEKDTSATFEIYFPEKVASGKVNILDSAGKV 139 >gi|323341380|ref|ZP_08081624.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644] gi|323091257|gb|EFZ33885.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644] Length = 157 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA-----SEQVAQLAVFSQME 61 +Q + + T+ D FLK++ T + + + + ++ ++Q+A FS ME Sbjct: 26 AANSQTLKNIGNNNSTIKIDDFLKIISTAMSNPSLSGDSSSSGSSGTDYISQMAQFSTME 85 Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDN 118 ++N T+ + + QA S IGK + D +G V + G I+V+ Sbjct: 86 TLNELNKTVTTAMMISQQQQAFSLIGKTVDMVDEKNQPFTGKVERVSFK-NGFAQISVNG 144 Query: 119 TEIPITTGIRISN 131 +++ + Sbjct: 145 KYYDMSSLSGVGE 157 >gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160] gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160] Length = 237 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N + + S S + + Q+ FL+LL+ Q+K+QDPT PM +S+ +QLA S ++ Sbjct: 22 MNGTSSSSSSTSSTSGTSASDLQNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQG 81 Query: 63 SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98 +N++L L L + +QA+ IG + ++ SI+ Sbjct: 82 ISNLNTSLSSLSTQLTAGQQSQAALLIGSTVLSSGNSIT 120 >gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12] gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12] Length = 232 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97 Query: 83 SSYIGKNITNADGSIS 98 ++ +G+ + + SIS Sbjct: 98 ANLVGQTVVFDNNSIS 113 >gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] Length = 265 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 3/106 (2%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + + Sbjct: 75 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 134 Query: 84 SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +YIG + + + + T A + + I ++G + Sbjct: 135 NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTV 180 >gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp. 3As] Length = 232 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82 + F LL+TQ+ +QDP PM ++ AQLA FS M ++ L L QA Sbjct: 38 NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97 Query: 83 SSYIGKNITNADGSIS 98 ++ +G+ + + S+S Sbjct: 98 ANLVGQTVVFDNNSLS 113 >gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter pylori HPKX_438_CA4C1] Length = 95 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75 + L ++AF+KL + Q+K+QDPT PM+ + + Q A +Q+E + T+QE+ Sbjct: 2 ATTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVAS 61 Query: 76 SN 77 + Sbjct: 62 AM 63 >gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD [Acidithiobacillus caldus ATCC 51756] Length = 231 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQAS 83 F LL+TQ+ +QDP P+ + AQLA FS + S+L L+ N QA+ Sbjct: 40 TFYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAA 99 Query: 84 SYIGKNITNADG 95 S IGK++T + Sbjct: 100 SLIGKSVTTSGN 111 >gi|319790417|ref|YP_004152050.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1] gi|317114919|gb|ADU97409.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1] Length = 218 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + ++ FLK+L+ ++ QDP + S+ + +ME +++ +++ + N Sbjct: 24 DNSKMSKEDFLKILLANLQWQDPLQAEDISQFIDDSVKLREMEALNDFENSVDKMVSTLN 83 Query: 79 LAQ---ASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTAITV 116 AS +IGK I G V+ S + V Sbjct: 84 SLSLFYASGFIGKLILYKGNQTYVENGKGYVSFTLPSDAASVTVEV 129 >gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 219 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 19 SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78 + Q+ FLK+L+ I+ QDP SE + ++E S +Q + + Sbjct: 26 DNSKMSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQTFVSTLQ 85 Query: 79 LAQ---ASSYIGKNITNADGSI 97 AS++IGK + Sbjct: 86 SQSLFFASNFIGKLVEYEGNQT 107 >gi|225871933|ref|YP_002753387.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793508|gb|ACO33598.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196] Length = 210 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 S + + + FL LL+ ++K+QDPT ++ + QL + ++Q + +N L Sbjct: 52 NSTATSGITSNDFLTLLVAEMKNQDPTSNTDPNQYIDQLVQVNSLQQLISINQEL 106 >gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM 14796] Length = 139 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 +AFL LLI Q+K+QDP + M +E + +L+ + +Q M++++Q + + N A++ Sbjct: 32 NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91 Query: 86 IGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130 IGK I + + S V + + + + + + + I +++ + +S Sbjct: 92 IGKKIQYTAADNSTQSATVTQVTIKNGNPSLVLDNGSTINLSSVVSVS 139 >gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226] gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226] Length = 101 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 Q++ ++ +K+L Q+ FL LL Q+ QDP +P+ + +AQ+A F+ ++ +MN+ Sbjct: 24 QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83 Query: 71 QEL---LKSNNLAQASSY 85 + L + SN QASS Sbjct: 84 ESLNSSMTSNQALQASSL 101 >gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella succinogenes DSM 1740] gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] Length = 270 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72 + TL +DAF++L + Q+K QDPT PM+ + + Q A+ +Q+EQ +M TL Sbjct: 20 AQNNNGTLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTLSS 76 >gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168] Length = 270 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLA 80 G + FL L + +I++QDPT+P ++ + QL+ +Q+ +M+ +T L+ + + Sbjct: 63 GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVM 122 Query: 81 QASSYIGKNITNADGSIS 98 + +G +I ++ Sbjct: 123 ALGNLVGDDIMVQTTTLQ 140 >gi|225849152|ref|YP_002729316.1| flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense Az-Fu1] gi|225644122|gb|ACN99172.1| putative flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense Az-Fu1] Length = 219 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQ---VAQLAVFSQM 60 +T + + + FLK+L+T ++ QDP S+ +L + Sbjct: 11 DTVNTGKPKVVDANYDNSKISNSDFLKILLTDLQWQDPLNAKDISDFLDNTVKLRQMESL 70 Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + ++ L + +N++ ASS IGK + Sbjct: 71 DSFQKLADALSKF--TNSILTASSLIGKKVKYEGNQT 105 >gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21] gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21] Length = 71 Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80 +LGQ FL+LL Q++ QDP P+ E ++Q+A FS + + N++L+ + +L Sbjct: 2 DSLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERIADQLDLL 61 >gi|300854214|ref|YP_003779198.1| putative flagellar hook protein FlgD [Clostridium ljungdahlii DSM 13528] gi|300434329|gb|ADK14096.1| predicted flagellar hook protein FlgD [Clostridium ljungdahlii DSM 13528] Length = 239 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQ--DPTEPMKASEQVAQLAVFS 58 ++ N+ + T K + ++ FLK+L ++ +Q ++ +++ ++QLA FS Sbjct: 20 IDTNSSSDTTSNGTKIVKKNNDIDKNMFLKILSAELANQDPTSSDSQSSTQYISQLAQFS 79 Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118 +EQ +NS+ + ++ + + ++ + ++SG V + + + Sbjct: 80 SLEQMANLNSSTKMGTANSLMNKYVTF--SDTDEQGNNVSGQVVGVIKDGDDIELNVLMG 137 Query: 119 TE 120 E Sbjct: 138 QE 139 >gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1] gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1] Length = 246 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 46 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 105 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 106 GNLVGDDIMVQT 117 >gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1] gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1] Length = 225 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 84 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 85 GNLVGDDIMVQT 96 >gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella nitroferrum 2002] Length = 226 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 + +T + + + ++ G D F+ LL+ QIK+Q+P +P S+ V QL +QM Sbjct: 8 LNDSTASSQGATPVASNGQSQSSGSDMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQM 67 Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98 + S+ M S L++ LL+ + +G ++ ++ Sbjct: 68 QTSLGMLSQLKDNAVLLRELQGLGLGNQVGNSVLVQSNTVQ 108 >gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus Ellin6076] Length = 99 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67 + T + + + +D FL+LL+ QIK+QDP P + + QLA F Q+EQS+ M Sbjct: 13 SGTSAASTSTGGTSAVTKDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72 Query: 68 STLQEL 73 + + Sbjct: 73 QDVTAI 78 >gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431] Length = 244 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans 621H] Length = 246 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83 + FL LL TQ++HQDP+ P A+LA F+ ++Q V+ N+ L L+ + Q + Sbjct: 54 NFNQFLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMA 113 Query: 84 ---SYIGKNITNADGSI 97 S IGK T + S+ Sbjct: 114 SAVSLIGKTTTASSSSL 130 >gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 218 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 ++ + + + + Q+ FLK+L+ +K QDP S+ + QME Sbjct: 11 DSATSNKPKVVDANYDNSKMSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESL 70 Query: 64 VQMNSTLQELLK-SNNLAQASSYIGKNITNADGSI 97 + + L +N++ ASS IGK + Sbjct: 71 DSIQKLVDTLSTFTNSIVNASSMIGKKVKYEGNQT 105 >gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v] Length = 237 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TAESNTVAASDTTSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli BSR3] Length = 259 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 +N T S + S L Q FL LL+TQ+++QDPT P+ +S+ +QLA + + Sbjct: 14 VNNTPTDTMNANSSNTSAADL-QQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSG 72 Query: 63 SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98 Q ++L + + QA+ +G N+ ++S Sbjct: 73 IAQLNSSLTSLSSQITAGQQTQAAMLVGSNVLAPGNTLS 111 >gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5] Length = 237 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509] Length = 237 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605] gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605] Length = 237 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739] gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia coli O26:H11 str. 11368] gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia coli O111:H- str. 11128] gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14] gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180] Length = 237 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1] gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia coli NC101] Length = 237 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia pseudomallei 668] gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia pseudomallei DM98] gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia pseudomallei NCTC 13177] gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e] gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668] gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia pseudomallei 305] gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e] Length = 241 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 9/124 (7%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64 Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Sbjct: 26 GAGQHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + L++S + S +G + S+ T I +DN E +T Sbjct: 86 NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVT 139 Query: 125 TGIR 128 + Sbjct: 140 VVLT 143 >gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026] gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412] gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli UMN026] gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412] gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia coli FVEC1302] Length = 237 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354] gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354] Length = 234 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 34 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 93 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 94 GNLVGDDIMVQT 105 >gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280] gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280] Length = 237 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens DSM 19370] Length = 90 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76 LG FLKLL Q+ HQDPT+P+ ++ VAQLA FS + + Q N+ L + Sbjct: 26 NKLGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQLSTISDQ 81 >gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia coli H736] gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736] gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736] Length = 237 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1] Length = 237 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia oklahomensis EO147] gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia oklahomensis C6786] Length = 223 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 11 QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + + + D F KLL QI++Q+P EPM +S+ V QL + Q + + Sbjct: 20 NKTPAPNANPEGSPADLFAKLLDAQIRNQNPLEPMDSSQFVTQLMMMQQTQAMETVAVLT 79 Query: 71 QELLKSNNLAQASSY---IGKNITNADGSIS 98 + L + + + +G + SI Sbjct: 80 NQNLATTSSMLVVALGSQVGAAVMAKADSIE 110 >gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei] Length = 231 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 9/124 (7%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64 Q S + D F KLL QI++Q+P EPM AS+ V Q+ + Sbjct: 16 GAGQHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 75 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124 + L++S + S +G + S+ T I +DN E +T Sbjct: 76 NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVT 129 Query: 125 TGIR 128 + Sbjct: 130 VVLT 133 >gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357] Length = 237 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TQESSNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] Length = 222 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82 + FL LL+TQ+++Q+P EP ++ V+QL ++ EQ +NS L L S N + Sbjct: 31 NDFLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNS 90 Query: 83 SSYIGKNITNADGSIS 98 S+YIG+ +T S + Sbjct: 91 SNYIGQTVTAKADSGT 106 >gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W] gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1] gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W] gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W] gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11] Length = 237 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9] gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9] gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9] Length = 237 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 T+ + S + D FL L + +I++QDPT+P A+E + QL+ +Q+ Sbjct: 16 TQESSNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75 Query: 65 QMN---STLQELLKSNNLAQASSYIGKNITNAD 94 +M+ +T L+ + + + +G +I Sbjct: 76 EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108 >gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia thailandensis TXDOH] Length = 241 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64 Q+ S S + D F KLL QI++Q+P EPM AS+ V Q+ + Sbjct: 26 GAGQRVPSPSPNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + L++S + S +G + S+ Sbjct: 86 NLTQNSAALMQSMFVVSLGSQVGAQVMVRTDSL 118 >gi|27464951|gb|AAN63048.1| flagellar component FlgD [Vibrio vulnificus] Length = 181 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 42 TEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94 +P+ + +AQ+A F+ ++ +MNS + L + SN QASS +G+++ Sbjct: 1 FKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDVLVPG 56 >gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 218 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LL+T++++Q+P +P ++ V+Q+ ++ EQ +N+ L L S N ++ Sbjct: 28 DFLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNST 87 Query: 84 SYIGKNITNADGSIS 98 +YIG+ +T S + Sbjct: 88 NYIGQTVTAKADSAT 102 >gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 94 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 38/58 (65%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79 LG FLKLL+TQ+++Q+P +P +E +QLA +SQ+EQ + MN TL + + + Sbjct: 25 KLGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTLTTMSDTMSN 82 >gi|15606897|ref|NP_214278.1| flagellar hook assembly protein [Aquifex aeolicus VF5] gi|2984144|gb|AAC07679.1| flagellar hook assembly protein [Aquifex aeolicus VF5] Length = 209 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77 + + FLK+ + +++QDP S+ + + +Q++ +M L+ L + Sbjct: 24 DNMSANDFLKIYLETLRYQDPFNQTDISKSLDDMVKINQIKYFTEMKQFLESLKAWMNQM 83 Query: 78 NLAQASSYIGKN 89 ++ IGK Sbjct: 84 TFLNTATLIGKE 95 >gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 97 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 NT V T S + S Q +FL LL+ Q+K+QDPT P++ +E QLA S + Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71 Query: 64 VQMNSTLQEL---LKSNNLAQASSYI 86 ++N+TL + + ++ QA++ I Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLI 97 >gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus CB15] gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15] gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter crescentus CB15] gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus NA1000] Length = 227 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + S++ ++ FL+LL TQ+K+QDP P ++ Q+ + +EQ Sbjct: 7 SQNTASVLDRINNSRTSLATNKETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 + N L L+ L++ + IGK + + + Sbjct: 67 LVTNDLLAALVGMNTGTGLSEGVAMIGKQVAAISDTST 104 >gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 222 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 3/106 (2%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LLI+++++QDP ++ + QL ++ Q ++NS++ L S + + Sbjct: 32 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 91 Query: 84 SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +YIG + + + + T A + + I ++G + Sbjct: 92 NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTV 137 >gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756] Length = 242 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 + + ++ + FLKLL TQ+K+QDP P ++ Q+ + +EQ Sbjct: 7 SQNTTSVLDRINNGRTSMASNTETFLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66 Query: 64 VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 + N L L+ L + S IGK +T S + Sbjct: 67 LVTNDLLAALVGMNTGTGLTEGVSMIGKQVTATTDSST 104 >gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638] gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638] Length = 237 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++Q+PT+P A+E + QL+ +Q+ +M+ +T L+ + + Sbjct: 37 DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96 Query: 83 SSYIGKNITNAD 94 + +G +I Sbjct: 97 GNLVGDDIMVQT 108 >gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia thailandensis Bt4] gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] Length = 241 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64 Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Sbjct: 26 GAGQRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + L++S + S +G + S+ Sbjct: 86 NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSL 118 >gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64 + +T+G + F+ LL+ Q+++QDPT PM ++ V Q + M Sbjct: 11 NSTPSLYATQPTRQPVQTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRSMQ 70 Query: 65 QM 66 + Sbjct: 71 DI 72 >gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia thailandensis E264] gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia thailandensis E264] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 8 NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64 Q+ S + D F KLL QI++Q+P EPM AS+ V Q+ + Sbjct: 16 GAGQRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 75 Query: 65 QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97 + L++S + S +G + S+ Sbjct: 76 NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSL 108 >gi|328545576|ref|YP_004305685.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1] gi|326415317|gb|ADZ72380.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1] Length = 222 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QAS 83 FL L++TQ+++Q+P +P + ++ ++ + +++ L + S + Sbjct: 31 DFLSLMLTQLQNQNPLDPTDTDTYLDRMVSYASYDTQTEISEQLSSIASSVSQMISGSGL 90 Query: 84 SYIGKNITNADGSIS 98 Y+G+ + + + Sbjct: 91 GYLGQTVEAYGNTTT 105 >gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC 29220] Length = 295 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82 D FL L + +I++QDPT+P + + QL+ +Q+ +M+ +T L+ + + Sbjct: 70 DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 129 Query: 83 SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + +G +I + + + + G + T++ + + Sbjct: 130 GNMVGDDIMVQ--TTTLDIEDNSKAIQGRVTLDDSCTDVDLHFTDEAGD 176 >gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 220 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82 + F+ LLIT++++Q+P EP ++ V QL ++ EQ +N+ L L S N + Sbjct: 29 NEFMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNS 88 Query: 83 SSYIGKNITNADGSIS 98 S+YIG+ +T + + Sbjct: 89 SNYIGQTVTAKADTGT 104 >gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus Koribacter versatilis Ellin345] Length = 92 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Query: 1 MEINTEVNPTQQEFSKSKSKKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 M I + S +G F +LL+ Q+K QDPT PM S+ V+QL + Sbjct: 1 MNITGPAVGQATNAATSGPVSGMGDLDTTFAQLLVAQLKSQDPTSPMDPSQLVSQLVGLN 60 Query: 59 QMEQSVQMNSTLQELLK--SNNLAQASSYIGK 88 ++ + L L +++ A + GK Sbjct: 61 TLDAVTSIYQLLAGLATIPTSSAANHYAAGGK 92 >gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68] Length = 234 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 37/69 (53%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 DAFL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + + Sbjct: 37 DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96 Query: 86 IGKNITNAD 94 +G +I Sbjct: 97 VGDDIMVQT 105 >gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4] Length = 94 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 38/71 (53%) Query: 6 EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65 T + + S T+ D F+ LL+ ++++QDPT P ++ + QL + ++Q + Sbjct: 17 SAMDTSTNPTTATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQLIG 76 Query: 66 MNSTLQELLKS 76 +N+ + EL S Sbjct: 77 INTGIGELTSS 87 >gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli] gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042] Length = 234 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%) Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85 D FL L + +I++QDPT+ + +Q++ +A + ME+ +T L+ + + + Sbjct: 37 DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96 Query: 86 IGKNITNAD 94 +G +I Sbjct: 97 VGDDIMVQT 105 >gi|91978425|ref|YP_571084.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5] gi|91684881|gb|ABE41183.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5] Length = 242 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N +L LLK QA ++IG N Sbjct: 53 PLDPLDTNQFTQQLVQFAGVEQQLKTNDSLSSLLKLQTTAQTTQAMNFIGANA------- 105 Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 VV+ + G TA +T+ P++ + I N Sbjct: 106 --VVDGSKSHFDGKTAGWSLSTDKPVSAQVSIQN 137 >gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009] gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD [Rhodopseudomonas palustris CGA009] gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93 K+Q+PT+P+ ++ QL F+ +EQ ++ N +L L++ QA S +G N Sbjct: 50 KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVD 109 Query: 94 DGSIS 98 + Sbjct: 110 GSKVQ 114 >gi|90422504|ref|YP_530874.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] gi|90104518|gb|ABD86555.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18] Length = 237 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ NS L+ L+K QA +++G DG Sbjct: 53 PLDPLDTNQFTQQLVQFAGVEQQLKSNSQLESLVKLQTGAQATQALNFVGATAVV-DGKT 111 Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + + + + + I TG + Sbjct: 112 TELTKGVAAWGINVPKSSTVTVNITNATGQTV 143 >gi|316935454|ref|YP_004110436.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] gi|315603168|gb|ADU45703.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93 K+Q+P +P+ ++ QL F+ +EQ ++ N +L L++ QA ++IG + Sbjct: 50 KNQNPMDPLDTNQFTQQLVQFAGIEQQLKSNESLSSLVELQTTAQATQALNFIGASAVVD 109 Query: 94 DGSIS 98 Sbjct: 110 GSKTQ 114 >gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim 5] Length = 61 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58 ++ K TL D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61 >gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 43 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68 +FL LL+ Q+K+QDPT P++ +E QLA S + ++N+ Sbjct: 2 SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNT 43 >gi|163781857|ref|ZP_02176857.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1] gi|159883077|gb|EDP76581.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1] Length = 210 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL- 79 + + F+K+ + +K QDP + S+ + + +Q++ M + + N Sbjct: 25 DNMSANEFMKIYLETLKFQDPFKQQDLSKSLEDVVKLNQVKFYTDMKGFMDNFVAWMNQV 84 Query: 80 --AQASSYIGKNITNADGSI 97 Q + IGK A ++ Sbjct: 85 TFMQTINLIGKEFVFASDTL 104 >gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio parahaemolyticus AQ3810] Length = 59 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87 L++ QI++QDP P+ +E V QLA FSQ++ + M+ +Q + + Q S G Sbjct: 1 LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNSMVLLDNMQVLSTAG 57 >gi|146341768|ref|YP_001206816.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS278] gi|146194574|emb|CAL78599.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS278] Length = 218 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + + Sbjct: 28 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 87 Query: 84 SYIGKNITNADGS 96 +YIG + + Sbjct: 88 NYIGHTVEAKSDT 100 >gi|75674799|ref|YP_317220.1| flagellar hook capping protein [Nitrobacter winogradskyi Nb-255] gi|74419669|gb|ABA03868.1| Flagellar hook capping protein [Nitrobacter winogradskyi Nb-255] Length = 230 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA ++GKN G+ Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLSNLVSLQQTTQATQALDFVGKNAVIDGGTA 114 Query: 98 S 98 + Sbjct: 115 T 115 >gi|148254599|ref|YP_001239184.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] gi|146406772|gb|ABQ35278.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] Length = 221 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL+LL++++++QDP ++ V Q+ ++ +N+++ L S + + Sbjct: 31 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 90 Query: 84 SYIGKNITNADGS 96 +YIG + + Sbjct: 91 NYIGHTVEAKTDT 103 >gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2] gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2] Length = 233 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 P EP+ ++ QL F+ +EQ ++ N TL LLK QA ++IG Sbjct: 51 PLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIG---------A 101 Query: 98 SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 + VV+ + G TA +T+ P+T + + Sbjct: 102 TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133 >gi|148253401|ref|YP_001237986.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] gi|146405574|gb|ABQ34080.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. BTAi1] Length = 230 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L L+ ++ QA +++GK + Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLGSLISMQQTTQATQALAFVGKTAVVNGSTT 114 >gi|289548123|ref|YP_003473111.1| flagellar hook capping protein [Thermocrinis albus DSM 14484] gi|289181740|gb|ADC88984.1| flagellar hook capping protein [Thermocrinis albus DSM 14484] Length = 203 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME---QSVQMNSTLQEL 73 ++ L FLK+ + ++ QDP + S+ + + +Q++ L++L Sbjct: 15 TQGVDNLSPQDFLKIYLETLRFQDPFQQQDLSKMLDDMVKLNQVKFFNDVRNTLENLKDL 74 Query: 74 LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122 LA S + + + V++ + G T + + +I Sbjct: 75 TLQMTLAAGLSVLNREV---------YVSSEDIIPNGATYYLMSDRDIK 114 >gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2] gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2] Length = 245 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96 P +P+ ++ AQL F+Q+EQ ++ N L L+ QA S++G+ I+ + Sbjct: 57 PLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTISVDGST 115 >gi|260774937|ref|ZP_05883838.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] gi|260609192|gb|EEX35350.1| flagellar basal-body rod modification protein FlgD [Vibrio coralliilyticus ATCC BAA-450] Length = 173 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%) Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSIS 98 +AQ+A F+ ++ +MN+ + L + SN QASS +G+++ DGS++ Sbjct: 1 MIAQMASFATVDGIGKMNNQFETLNASMTSNQALQASSLVGRDVLVPGAAGVKADDGSMA 60 Query: 99 GVVNAIQVSSTGLTAITV 116 +V Q + + Sbjct: 61 AMVKLPQSVDNLMVRVED 78 >gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9] Length = 162 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69 T + + FL LL+ ++++QDPT PM ++ V Q+ +Q++Q + +N T Sbjct: 36 TTSSTTSDGLTGSTAGTTFLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQT 95 Query: 70 LQELLKSNNLA 80 L + + Sbjct: 96 LGGSSSTATAS 106 >gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 221 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83 FL LL+ ++++Q+P +P ++ +QL ++ EQ +NS L L S N +S Sbjct: 31 DFLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLNSS 90 Query: 84 SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129 +YIG+ +T S + +I + +A + ++G + Sbjct: 91 NYIGQTVTAKADSATLENGSISFGYSLNSAAKNVTLTVSDSSGNTV 136 >gi|333004884|gb|EGK24404.1| basal-body rod modification protein flgD [Shigella flexneri VA-6] Length = 180 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 45 MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVV 101 M+ +E +QLA S + ++N+TL + + ++ QAS+ IG + ++ Sbjct: 1 MENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGT 60 Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRISN 131 + + + T T V+ + I++ Sbjct: 61 GSEEGAVTTTTPFGVELQQAADKVTATITD 90 >gi|331666545|ref|ZP_08367419.1| basal-body rod modification protein FlgD [Escherichia coli TA271] gi|331065769|gb|EGI37653.1| basal-body rod modification protein FlgD [Escherichia coli TA271] Length = 195 Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNA 93 K+QDPT+P A+E + QL+ +Q+ +M+ +T L+ + + + +G +I Sbjct: 6 KNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDIMVQ 65 Query: 94 D 94 Sbjct: 66 T 66 >gi|161511086|ref|NP_773637.2| flagellar hook assembly protein [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L +L+ ++ QA ++GK + Sbjct: 56 PLDPLDTNQFTQQLVQFAGVEQQLKTNDALSQLVTLQQTTQATQALGFVGKTALVDGSTA 115 Query: 98 SGVVNAIQVSSTGLTAITVDNT 119 + ++ + TVD T Sbjct: 116 TMKNSSATWHLNVPSDSTVDIT 137 >gi|163749771|ref|ZP_02157017.1| putative transporter [Shewanella benthica KT99] gi|161330584|gb|EDQ01542.1| putative transporter [Shewanella benthica KT99] Length = 576 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ + QL+ FS +E + N L L L Q S IGK + + Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVLKQESVLIGKTLKGSGFR--------A 317 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + AI D EI G + Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341 >gi|157376094|ref|YP_001474694.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318468|gb|ABV37566.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3] Length = 575 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ + QL+ FS +E + N L L + Q S IGK + A Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVVKQESVLIGKTLKGAGFR--------A 317 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + AI D E+ G + Sbjct: 318 LFDAAVVAIRRDGEEVSGKLGEVV 341 >gi|157376121|ref|YP_001474721.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318495|gb|ABV37593.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3] Length = 575 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 51 VAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG 110 V QL+ FS +E + N L L + Q S IGK + A + Sbjct: 271 VMQLSQFSGLEMFAEKNGLLDSNLTEVVVRQESILIGKTLKGAGFR--------ALFDGA 322 Query: 111 LTAITVDNTEIPITTGIRI 129 + AI D +I G + Sbjct: 323 VVAIRRDGEDISGKLGEVV 341 >gi|209884349|ref|YP_002288206.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5] gi|209872545|gb|ACI92341.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5] Length = 239 Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Query: 5 TEVNPTQQEFSKSKSKKTLGQDA----FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60 T Q + +KS + G FL LL TQ+++Q+P +P+ ++ QL F+Q+ Sbjct: 12 TSAGAAAQNNTSTKSSSSTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAQV 71 Query: 61 EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96 EQ ++ N L L+ QA ++G+ I+ + Sbjct: 72 EQQLKANDQLSALVALQKTAQSTQALGFVGQTISVDGST 110 >gi|115523065|ref|YP_779976.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gi|115517012|gb|ABJ04996.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 243 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62 N + S K+ FL LL TQ+++Q+P +P+ ++ QL F+ +EQ Sbjct: 16 NPNYSANSSSSSSGKTSGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQ 75 Query: 63 SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97 ++ NS L+ L+K QA +++G + Sbjct: 76 QLKSNSQLEALVKLQTGAQATQALNFVGATAIVDGATT 113 >gi|85713553|ref|ZP_01044543.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A] gi|85699457|gb|EAQ37324.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A] Length = 230 Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61 T + + + + TL + FL LL TQ+++Q+P +P+ ++ QL F+ +E Sbjct: 16 TTALPASSPGSAATSDNNTLAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVE 75 Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98 Q ++ N L L+ ++ QA ++GKN + + Sbjct: 76 QQLRTNDQLSNLVSMQQTAQATQALDFVGKNAVVDGSTAT 115 >gi|146342727|ref|YP_001207775.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. ORS278] gi|146195533|emb|CAL79560.1| putative flagellar basal-body rod modification protein FlgD [Bradyrhizobium sp. ORS278] Length = 231 Score = 39.6 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97 P +P+ ++ QL F+ +EQ ++ N L L ++ QA +++GK Sbjct: 56 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQT 115 >gi|205373383|ref|ZP_03226187.1| hypothetical protein Bcoam_08725 [Bacillus coahuilensis m4-4] Length = 114 Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 6/87 (6%) Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGS---ISGVVN 102 + + F+ + ++ + + EL N+L +AS+ IGK++T + +S +V+ Sbjct: 27 KFTGETVEFTLEDGTILLPENISELKSPQVGNSLVEASNLIGKSVTWLGENEEQLSSIVS 86 Query: 103 AIQVSSTGLTAITVDNTEIPITTGIRI 129 ++ + T D+ +I + + I Sbjct: 87 SVSQKDGEIYIHTKDSQKIKASDLVTI 113 >gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD [Gluconacetobacter diazotrophicus PAl 5] gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93 ++QDP+ PM + +LA F+ +EQ VQ N+ L L+ N L +S +GK T Sbjct: 64 QNQDPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTATAD 123 Query: 94 DGSISGVVNAIQVSSTGLTAITV 116 ++ + +S TG TV Sbjct: 124 STTLPLQNGSASLSFTGTAGETV 146 >gi|294140272|ref|YP_003556250.1| transporter, sodium/sulfate symporter family [Shewanella violacea DSS12] gi|293326741|dbj|BAJ01472.1| transporter, sodium/sulfate symporter family [Shewanella violacea DSS12] Length = 575 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ + QL+ FS +E + N L L + Q S I K + + Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVIKQESVLIDKTLKGSGFR--------A 317 Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129 + + AI D EI G + Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341 >gi|218461407|ref|ZP_03501498.1| flagellar basal body rod modification protein [Rhizobium etli Kim 5] Length = 58 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 26/41 (63%) Query: 91 TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131 +ADG++ G V +++V S G+ A T D +I + GI +++ Sbjct: 3 ESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 43 >gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] Length = 455 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVI----RMEGIINSMT 389 Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129 + + + I G+++ Sbjct: 390 PQERAKPELIKASRKRRIATGAGVQV 415 >gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog) [Herminiimonas arsenicoxydans] Length = 455 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 389 Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129 + + + I G+++ Sbjct: 390 PQERAKPDLIKASRKRRIATGAGVQV 415 >gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas arsenicoxydans] Length = 396 Score = 37.7 bits (86), Expect = 0.61, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 46 KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105 ++ +QLA +M + L L+ K + + G++N++ Sbjct: 275 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 330 Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129 + + + I G+++ Sbjct: 331 PQERAKPDLIKASRKRRIATGAGVQV 356 >gi|315125523|ref|YP_004067526.1| two-component system [Pseudoalteromonas sp. SM9913] gi|315014036|gb|ADT67374.1| probable two-component system [Pseudoalteromonas sp. SM9913] Length = 392 Score = 37.3 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%) Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ------MNSTLQELLKSNNLA 80 K ++ Q+K+Q+ + S+ QL + Q+ +N + +L ++ Sbjct: 286 FKDIVAQLKNQNAMQTNAISQLTEQLEQLQSLMQTQNDLPASQLNEQITQLSHTSQQL 343 >gi|206895859|ref|YP_002246689.1| basal-body rod modification protein FlgD [Coprothermobacter proteolyticus DSM 5265] gi|206738476|gb|ACI17554.1| basal-body rod modification protein FlgD [Coprothermobacter proteolyticus DSM 5265] Length = 97 Score = 37.3 bits (85), Expect = 0.81, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 39/73 (53%) Query: 7 VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66 + +Q + L +D FLKLL+ ++K QDP PM + Q+ + + +++ +++ Sbjct: 6 TSSSQGATGSEQKVPGLNRDDFLKLLLAELKAQDPLSPMDTNTMTTQITLLNVLQELIEI 65 Query: 67 NSTLQELLKSNNL 79 + LQ L+ + + Sbjct: 66 KTMLQNLVSAKSQ 78 >gi|170039141|ref|XP_001847404.1| cytochrome P450 [Culex quinquefasciatus] gi|167862754|gb|EDS26137.1| cytochrome P450 [Culex quinquefasciatus] Length = 504 Score = 36.6 bits (83), Expect = 1.4, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKH-QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70 + + + K + ++ F+ LLI Q+K+ +DP + E AQ VF + S ++ + Sbjct: 263 HDTVRQREKNNVQRNDFMNLLI-QLKNSEDPDARITMDEMAAQSFVF-FLAGSETSSTAM 320 Query: 71 QELLKSNNLAQASS 84 + + Q Sbjct: 321 VNCMYELAMNQDIQ 334 >gi|195953026|ref|YP_002121316.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1] gi|195932638|gb|ACG57338.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1] Length = 240 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 11/112 (9%) Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKAS-----EQVAQLAVFSQMEQSVQMNSTLQELLKS 76 L A++++ T++K+QDP QL + Q L+ LL Sbjct: 41 NLSASAYMEIYTTELKYQDPASSSGNDVTSMINATVQLQQIGYYSIAQQQTQALEALLSQ 100 Query: 77 NNLAQASSYIGKNITNADG------SISGVVNAIQVSSTGLTAITVDNTEIP 122 + + IGK + ++S ++A S I NT + Sbjct: 101 MTTLNSINMIGKEFVFSTSGIDTTKNVSYYLDAPTSMSNVSVEIMNGNTPVK 152 >gi|312374950|gb|EFR22408.1| hypothetical protein AND_15276 [Anopheles darlingi] Length = 906 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 49 EQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84 + + Q+ Q+ Q Q+N + +L + N L+Q S Sbjct: 657 QMINQMGQMGQLGQMNQLNQ-MNQLNQMNQLSQMQS 691 >gi|92116311|ref|YP_576040.1| flagellar hook capping protein [Nitrobacter hamburgensis X14] gi|91799205|gb|ABE61580.1| flagellar hook capping protein [Nitrobacter hamburgensis X14] Length = 230 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 41 PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS-------YIGKNITNA 93 P +P+ ++ QL F+ +EQ ++ N L L+ Q ++ ++GKN Sbjct: 55 PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLTSLVS----LQQTAQATQALDFVGKNAVVD 110 Query: 94 DGSIS 98 + + Sbjct: 111 GSTAT 115 >gi|194334553|ref|YP_002016413.1| TrkA-C domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194312371|gb|ACF46766.1| TrkA-C domain protein [Prosthecochloris aestuarii DSM 271] Length = 593 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--LLKSNNLAQASSYIGK 88 LL +QD +P++ A +E + NS+L+ + +S +Q + + Sbjct: 290 LLTA---YQD-LQPVEVELFGGNGAGMHMVEGVIAYNSSLENKTIKESQFRSQYDAAV-V 344 Query: 89 NITNADGSISGVVNAIQVSSTGLTAITVD 117 + ISG + +I + + + + Sbjct: 345 AVLRGGERISGKIGSISLKAGDVLLLLAG 373 >gi|195476086|ref|XP_002085980.1| GE22675 [Drosophila yakuba] gi|194185762|gb|EDW99373.1| GE22675 [Drosophila yakuba] Length = 214 Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Query: 39 QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS-YIGKNITNADGSI 97 Q P +P E + S ME M +T+Q ++++ N+ + Y+G IT + + Sbjct: 70 QVPVQPQSKLESMMFTMQQSMMELMSFMKTTMQTIVQNQNMGEYIEYYLGHFITLSTMAA 129 Query: 98 SGVVNAIQVSSTGLTAITVDNT 119 +G+ N I A V+N Sbjct: 130 AGLGNTISDILGITMATYVENG 151 >gi|195451169|ref|XP_002072798.1| GK13491 [Drosophila willistoni] gi|194168883|gb|EDW83784.1| GK13491 [Drosophila willistoni] Length = 603 Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 3 INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA-QLAVFSQME 61 IN V+ QE + + + +FL QDP K ++ +A Q A +++E Sbjct: 481 INPRVSAQPQETGANNATSGIDAQSFLPKQWADGNWQDPQAVAKYNQVIADQKARINELE 540 Query: 62 QSVQMNSTLQELLKS 76 + ++ LQE ++S Sbjct: 541 DLLTQHNILQETIQS 555 >gi|124802089|ref|XP_001347360.1| transcription factor with AP2 domain(s), putative [Plasmodium falciparum 3D7] gi|23494939|gb|AAN35273.1| transcription factor with AP2 domain(s), putative [Plasmodium falciparum 3D7] Length = 1597 Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90 L+ TQ+ +Q ++ Q+ + + QM + + + + Q ++ + + Sbjct: 1038 LMKTQLNNQ--MTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQVNNQMTNQM 1095 Query: 91 TNA 93 TN Sbjct: 1096 TNQ 1098 >gi|118488401|gb|ABK96017.1| unknown [Populus trichocarpa] Length = 305 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 39 QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS----YIGKNITNAD 94 QDPT+ Q +E L+ L +S++ + G+ + +A Sbjct: 56 QDPTKGNDVDAIFNQARQLGAVEG------PLENLNQSSSSRSFTGTGRLLSGETVPSAP 109 Query: 95 GSISGVVNAIQVSSTGLTAITVDN 118 VV+ I + G D Sbjct: 110 QQPEAVVHNIVFWTNG--FTVDDG 131 >gi|224118108|ref|XP_002331560.1| predicted protein [Populus trichocarpa] gi|222873784|gb|EEF10915.1| predicted protein [Populus trichocarpa] Length = 309 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 39 QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS----YIGKNITNAD 94 QDPT+ Q +E L+ L +S++ + G+ + +A Sbjct: 56 QDPTKGNDVDAIFNQARQLGAVEG------PLENLNQSSSSRSFTGTGRLLSGETVPSAP 109 Query: 95 GSISGVVNAIQVSSTGLTAITVDN 118 VV+ I + G D Sbjct: 110 QQPEAVVHNIVFWTNG--FTVDDG 131 >gi|255027495|ref|ZP_05299481.1| flagellar basal body rod modification protein [Listeria monocytogenes FSL J2-003] Length = 77 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 59 QMEQSVQMNSTLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-I 114 Q+ L E +++ L A ++IGK+ ++ ISG V ++Q ++ G+ + Sbjct: 2 QVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKL 61 Query: 115 TVDNTEIPITTGIRIS 130 +++ +P+T I+ Sbjct: 62 KDNDSLVPMTYVTEIN 77 >gi|1335715|emb|CAA35521.1| unnamed protein product [Plasmodium falciparum] Length = 1256 Score = 33.9 bits (76), Expect = 8.9, Method: Composition-based stats. Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 4 NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63 N +N K++ + + Q+ +Q ++ Q+ + + Sbjct: 747 NGLMNNQMINQMKTQLNNQMTNQM-TNQMTNQMTNQ--MTNQMTNQMTNQMTNQMTNQMT 803 Query: 64 VQMNSTLQELLKSNNLAQASSYIGKNITNA 93 Q+N+ + + + Q ++ + + N Sbjct: 804 NQVNNQMTNQMTNQVNNQMTNQMTNQVNNQ 833 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.305 0.136 0.341 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 838,369,940 Number of Sequences: 14124377 Number of extensions: 25018235 Number of successful extensions: 97790 Number of sequences better than 10.0: 1490 Number of HSP's better than 10.0 without gapping: 1221 Number of HSP's successfully gapped in prelim test: 269 Number of HSP's that attempted gapping in prelim test: 93966 Number of HSP's gapped (non-prelim): 2698 length of query: 131 length of database: 4,842,793,630 effective HSP length: 96 effective length of query: 35 effective length of database: 3,486,853,438 effective search space: 122039870330 effective search space used: 122039870330 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 76 (33.9 bits)