BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|255610098|ref|XP_002539132.1| conserved hypothetical protein [Ricinus communis]
 gi|223508457|gb|EEF23251.1| conserved hypothetical protein [Ricinus communis]
          Length = 228

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/109 (44%), Positives = 75/109 (68%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
            L  + FL+LLI Q+++QDPT+PM AS+Q++QLA FSQ+EQ +Q NS L+ +L++  ++Q
Sbjct: 27  NLNYNDFLQLLIAQMQNQDPTDPMDASQQISQLASFSQVEQQIQTNSHLETVLQNQWISQ 86

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           AS YIGK I +ADG  +G +  + V + G+ A T    +I I  G+ I+
Sbjct: 87  ASDYIGKQIMSADGKTTGTIKEVTVYTDGIIAQTDAGDKILIQAGVTIA 135


>gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040197|gb|ACT56993.1| flagellar basal body rod modification protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 131

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM
Sbjct: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE
Sbjct: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120

Query: 121 IPITTGIRISN 131
           IPITTGIRISN
Sbjct: 121 IPITTGIRISN 131


>gi|121602800|ref|YP_989378.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
 gi|120614977|gb|ABM45578.1| flagellar hook capping protein [Bartonella bacilliformis KC583]
          Length = 190

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           QQ+   + +KK    D F+KLL+ Q+K+QDPT PM ++E VAQLA FS +EQ+++MN  L
Sbjct: 19  QQDTPDTGAKKNTDYDTFVKLLVAQMKNQDPTNPMNSTEFVAQLASFSMVEQAIKMNDKL 78

Query: 71  QELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
           +++L +  ++ A  Y+GK I   D     I G V ++ + S G+ A   +  ++ I  G+
Sbjct: 79  EQVLANGAISGAEGYVGKYIQFEDKDGNIIEGYVKSVDIYSDGIVATLDNGEKVLIGPGV 138

Query: 128 RI 129
            +
Sbjct: 139 TV 140


>gi|260893869|ref|YP_003239966.1| flagellar hook capping protein [Ammonifex degensii KC4]
 gi|260866010|gb|ACX53116.1| flagellar hook capping protein [Ammonifex degensii KC4]
          Length = 136

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+++T + PT    + S ++         +D FLK+L+ Q+ H DP  P K    +++++
Sbjct: 1   MDVSTLMAPTAGTSAASTTEAASSLFRWSKDTFLKILVAQLSHPDPFSPPKPETIISEMS 60

Query: 56  VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTA 113
             + +EQ +++ S+L    +   L Q +S +GK +T      +++G V  +++   G   
Sbjct: 61  NLALLEQMMRLTSSLDSFSRWLELGQGASLVGKRVTVEADGSAVTGTVEKVRL-EDGKIR 119

Query: 114 ITVDNTEIPITTGIRI 129
           + +D  E P+     +
Sbjct: 120 LVIDGREYPLAAVKEV 135


>gi|319403983|emb|CBI77571.1| hypothetical protein BARRO_30152 [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 169

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
            +   + +KK    D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL 
Sbjct: 18  GQPEMAGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLS 77

Query: 72  ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
           ++L +  +  A  Y+GK I   D     I G V +I + S G+ A   +  ++ I  G++
Sbjct: 78  QMLSNGLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVK 137

Query: 129 I 129
           +
Sbjct: 138 V 138


>gi|319406999|emb|CBI80636.1| Flagellar hook capping protein (fragment) [Bartonella sp. 1-1C]
          Length = 170

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 3/121 (2%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
            +   + +KK    D F+KLL+ Q+K+QDPT+PM ++E V+QLA FS +EQ+++MN TL 
Sbjct: 19  GKPEMAGAKKNADYDMFIKLLVAQMKNQDPTKPMDSTEFVSQLASFSSVEQAIKMNETLS 78

Query: 72  ELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
           ++L +  +  A  Y+GK I   D     I G V +I + S G+ A   +  ++ I  G++
Sbjct: 79  QMLSNGLINGAEGYVGKYIQFTDEKDKVIEGYVVSIDIYSDGIVATLDNGEKVVIGPGVK 138

Query: 129 I 129
           +
Sbjct: 139 V 139


>gi|319898661|ref|YP_004158754.1| flagellar hook capping protein [Bartonella clarridgeiae 73]
 gi|319402625|emb|CBI76170.1| Flagellar hook capping protein (fragment) [Bartonella clarridgeiae
           73]
          Length = 169

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                +   + +KK    D F+KLL+ Q+K+QDPT+PM ++E VAQLA FS +EQ+++MN
Sbjct: 14  QNIDGQPEMAGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAQLASFSSVEQAIKMN 73

Query: 68  STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPIT 124
            TL ++L + ++  A  Y+GK I   D     I G V +I + S G+ A   +  ++ I 
Sbjct: 74  ETLTQMLSNGSINGAEGYVGKYIQFTDEKDKIIEGYVVSIDIYSDGIVATLDNGEKVVIG 133

Query: 125 TGIRI 129
            G+++
Sbjct: 134 PGVKV 138


>gi|163758037|ref|ZP_02165125.1| flagellar basal-body rod modification protein D [Hoeflea
           phototrophica DFL-43]
 gi|162284326|gb|EDQ34609.1| flagellar basal-body rod modification protein D [Hoeflea
           phototrophica DFL-43]
          Length = 133

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 91/132 (68%), Gaps = 3/132 (2%)

Query: 1   MEINTEVNPTQQEFS---KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
           M+I+     ++ + S    + +K TL  D FL LL+ Q+K+QDPT+PM ++EQ+AQLA F
Sbjct: 1   MDISPLAAASRSQGSAADTAANKATLDYDTFLTLLVEQMKNQDPTDPMDSTEQIAQLATF 60

Query: 58  SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           SQ+EQ++Q N  L+ELL+S++L+QA S IG+ IT+ D ++SG +  +QV S GL A+  D
Sbjct: 61  SQVEQTIQTNKHLEELLQSSSLSQAGSLIGRTITSNDETVSGTIEEVQVYSDGLVAVLED 120

Query: 118 NTEIPITTGIRI 129
            T++ +  G+ I
Sbjct: 121 GTKVVVGPGVSI 132


>gi|237817497|ref|ZP_04596488.1| flagellar basal body rod modification protein [Brucella abortus
           str. 2308 A]
 gi|294852963|ref|ZP_06793635.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
 gi|237787332|gb|EEP61549.1| flagellar basal body rod modification protein [Brucella abortus
           str. 2308 A]
 gi|294818618|gb|EFG35618.1| flagellar hook capping protein [Brucella sp. NVSL 07-0026]
          Length = 151

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/111 (50%), Positives = 82/111 (73%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K ++  D+FLKLL+TQ+++QDPT+PM  ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 41  KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 100

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            QA  +IG+ +TNADGSISGVV ++ + S+G+ A   D   + I  G+RIS
Sbjct: 101 TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 151


>gi|319405426|emb|CBI79045.1| Flagellar hook capping protein [Bartonella sp. AR 15-3]
          Length = 169

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/128 (34%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +    + ++     +KK    D F+KLL+ Q+K+QDPT+PM ++E VA LA FS +EQ++
Sbjct: 11  SYSQDSGEQTEMVGAKKNADYDTFIKLLVAQMKNQDPTKPMDSTEFVAHLASFSSVEQAI 70

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121
           +MN TL ++L + ++  A  Y+GK I   D     I G V +I + S G+ A   +  ++
Sbjct: 71  KMNETLAQMLSNGSINGAEGYVGKYIQFTDEKGTVIEGYVVSIDIYSDGIVATLDNGEKV 130

Query: 122 PITTGIRI 129
            I  G+++
Sbjct: 131 VIGPGVKV 138


>gi|220932519|ref|YP_002509427.1| flagellar hook capping protein [Halothermothrix orenii H 168]
 gi|219993829|gb|ACL70432.1| flagellar hook capping protein [Halothermothrix orenii H 168]
          Length = 142

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                ++   +      L +DAF KLLITQ++HQDP +PM+  E +AQ+A FS +EQ   
Sbjct: 14  TSQSNEKVTMERNDGNNLDKDAFFKLLITQLRHQDPLKPMEDREFIAQMAEFSSLEQMAN 73

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNADGS----ISGVVNAIQVSSTGLTAITVDNTEI 121
           MN  L   ++  +L+Q ++ IG+N+   D      +SG V  +   S  L A   ++ +I
Sbjct: 74  MNENLSTFMRMESLSQGAALIGRNVEYVDSQSGRILSGKVTKVVYESGTLYAHLDNDVKI 133

Query: 122 PITTGIRIS 130
           P+ T   IS
Sbjct: 134 PVDTITSIS 142


>gi|110632635|ref|YP_672843.1| flagellar basal body rod modification protein [Mesorhizobium sp.
           BNC1]
 gi|110283619|gb|ABG61678.1| flagellar hook capping protein [Chelativorans sp. BNC1]
          Length = 129

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/130 (42%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M ++T  + T Q    + + +T+   +FL+LL+ Q+K+QDPT PM++++ VAQLA FSQ+
Sbjct: 1   MNVSTVTS-TPQNQQTASAPQTVDYQSFLRLLVAQMKNQDPTSPMESTDYVAQLATFSQV 59

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQMNS L+++L ++ L+QA   IG+ IT+ADGS++G+V  +++ S G+ A      E
Sbjct: 60  EQSVQMNSKLEQILAASALSQAGGVIGREITSADGSVTGIVKEVKLYSDGVIAKLESGQE 119

Query: 121 IPITTGIRIS 130
           + +  G+ IS
Sbjct: 120 VVVGPGVVIS 129


>gi|325291967|ref|YP_004277831.1| flagellar basal body rod modification protein [Agrobacterium sp.
           H13-3]
 gi|325059820|gb|ADY63511.1| flagellar basal body rod modification protein [Agrobacterium sp.
           H13-3]
          Length = 156

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/123 (41%), Positives = 80/123 (65%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 S  KS  +L  D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+
Sbjct: 15  ANAGASSNDKSAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNT 74

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
            L+ +L++  L +AS  +GK + +AD  ++GVV  ++V S G+ AIT    ++ +  G+ 
Sbjct: 75  HLKSMLQAEALTRASDLVGKTVKSADDKVTGVVKEVEVYSDGVVAITEAGDKVLLQAGVT 134

Query: 129 ISN 131
            SN
Sbjct: 135 FSN 137


>gi|150395508|ref|YP_001325975.1| flagellar basal body rod modification protein [Sinorhizobium
           medicae WSM419]
 gi|150027023|gb|ABR59140.1| flagellar hook capping protein [Sinorhizobium medicae WSM419]
          Length = 138

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/130 (38%), Positives = 85/130 (65%), Gaps = 2/130 (1%)

Query: 2   EINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
             +    P  +  E +   S  TL  ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ
Sbjct: 8   NTSNSYTPIVSGTESAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
           +EQ+++ N  L+ LL+  +L++A + IG+ +T+ADG  +GVV  +++ S G+ A+     
Sbjct: 68  VEQTIKTNKNLESLLQRTSLSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127

Query: 120 EIPITTGIRI 129
           E+ I  G+++
Sbjct: 128 ELVIGPGVKV 137


>gi|323136996|ref|ZP_08072076.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
 gi|322397757|gb|EFY00279.1| flagellar hook capping protein [Methylocystis sp. ATCC 49242]
          Length = 136

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 79/125 (63%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N T+     + +      +AFL+LL+T+++HQDP +PM  ++ V QLA F+ +EQ++Q
Sbjct: 12  TSNSTRAASVANAAADAGNYNAFLQLLVTELRHQDPMKPMDPTQTVTQLATFASVEQAIQ 71

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
            NS L  L +++ L+QASS IG+ +++ADG  SGVV ++ +   G+ A+  D  ++ +  
Sbjct: 72  TNSLLASLNENSALSQASSLIGRTVSSADGKTSGVVKSVMIDDGGMIAVLADGRKVLLGP 131

Query: 126 GIRIS 130
           G+ IS
Sbjct: 132 GVTIS 136


>gi|169827127|ref|YP_001697285.1| hypothetical protein Bsph_1557 [Lysinibacillus sphaericus C3-41]
 gi|168991615|gb|ACA39155.1| Hypothetical ylxG protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              ++ +K      LG+DAFL+LLITQ++HQDPT PM   E ++Q+A FS +EQ   M  
Sbjct: 20  SNYKKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTK 79

Query: 69  TLQELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLT 112
            ++ LL S    Q  +Y   +GK +   +                SGV+ +++     + 
Sbjct: 80  AVESLLASQQQTQMMNYATFVGKEVKWHEISDKTDEKGEPIVNEGSGVIESLKFVDGSVV 139

Query: 113 AITVDNTEIPITTGIRI 129
               D  EI       I
Sbjct: 140 FKLADGKEITPGNISGI 156


>gi|13472597|ref|NP_104164.1| flagellar basal body rod modification protein [Mesorhizobium loti
           MAFF303099]
 gi|14023343|dbj|BAB49950.1| flagellar hook assembly scaffolding protein; FlgD [Mesorhizobium
           loti MAFF303099]
          Length = 135

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/129 (42%), Positives = 93/129 (72%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +++ T +       +KS SK  +   +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3   VDMTTTIPVGANSTTKSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG  +G+V ++ ++S+GL A+  D T+
Sbjct: 63  EQSVQSNTKLDQIMQSSALSQADAIIGRSITSADGKTTGIVASVTLASSGLIAVLQDGTK 122

Query: 121 IPITTGIRI 129
           +P+  G+ I
Sbjct: 123 VPVGPGVSI 131


>gi|119953083|ref|YP_945292.1| flagellar basal body rod modification protein [Borrelia turicatae
           91E135]
 gi|119861854|gb|AAX17622.1| basal-body rod modification protein FlgD [Borrelia turicatae
           91E135]
          Length = 144

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           +  +  +      LG+D FLKLLITQ+K+QDPT+PMK  E +AQ+A FS +EQ   M+ +
Sbjct: 20  SNSKVQRGVKGNNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79

Query: 70  LQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
            + L     + +    +GK +         I G V  I+  +  +  I +D         
Sbjct: 80  FESLSSVLGINKDLDLLGKIVEFEHVDGEIIKGKVTNIK--TGIVPQIMIDGKYYVYNNI 137

Query: 127 IRIS 130
           + + 
Sbjct: 138 LSVG 141


>gi|315122289|ref|YP_004062778.1| flagellar basal body rod modification protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495691|gb|ADR52290.1| flagellar basal body rod modification protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 125

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 94/125 (75%), Positives = 106/125 (84%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           +N TQ+E   SK    +G DAF KLLI Q+KHQDPTEPMKASEQVAQLAVFSQMEQSVQM
Sbjct: 1   MNSTQKESLPSKPNTMMGHDAFFKLLIAQMKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 60

Query: 67  NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           N+ L+ELL SNNLAQASSYIGKNI N DGS+SG+V A+QVSSTGLTAIT +N EIPI TG
Sbjct: 61  NTNLKELLNSNNLAQASSYIGKNIENVDGSMSGIVKAVQVSSTGLTAITAENQEIPIKTG 120

Query: 127 IRISN 131
           IR+S+
Sbjct: 121 IRVSS 125


>gi|170748120|ref|YP_001754380.1| flagellar basal body rod modification protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654642|gb|ACB23697.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 139

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 75/108 (69%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           L  D FLKLL+ Q+K+Q+PT+PMK+++ +AQLA FSQ+EQSV MNS L  LL S+ L+QA
Sbjct: 32  LNYDNFLKLLLAQMKNQNPTDPMKSTDYMAQLATFSQVEQSVNMNSKLDALLTSSTLSQA 91

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
              +G  +T+AD +++G V +++V+S GL A   +  ++    G+ + 
Sbjct: 92  GGLVGHTVTSADKTLTGTVVSVEVASNGLLAHLDNGKDVRYEPGMTVY 139


>gi|78043304|ref|YP_359846.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995419|gb|ABB14318.1| flagellar hook assembly protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 135

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 73/130 (56%), Gaps = 6/130 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++++++ +    S++K    L +DAFLK+ + Q+++QDP  P   +E +A+LA F  +EQ
Sbjct: 8   VSSQMSTSANAASQTKLN--LDKDAFLKIFLAQLQYQDPLNPADGTEFIAELAQFGMLEQ 65

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNT 119
              +   L +LL+    AQA++ IGK +   T A+  + GVV+A++ S     ++ V+  
Sbjct: 66  LTNLTDALTKLLQFEQKAQAAALIGKTVKIATAAETLVEGVVSAVRWSGD-QISLVVNGQ 124

Query: 120 EIPITTGIRI 129
           E      I +
Sbjct: 125 EYSPDKVIEV 134


>gi|325289232|ref|YP_004265413.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964633|gb|ADY55412.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 263

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N+    T    S   +  +L ++ FL LL+TQ+K+QDP  P  ++E V+QLA FS +EQ
Sbjct: 6   VNSTSYTTAGTASSRDTSTSLDKEDFLNLLVTQLKYQDPLNPSDSTEYVSQLAQFSLLEQ 65

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNT 119
              MN++L+ L     L     YI  ++T + G   ++ G V+++ + S G  A+ V   
Sbjct: 66  MTNMNTSLEAL---EALTMTGKYITASVTGSSGETTTVEGTVDSVTM-SNGEAALVVGGK 121

Query: 120 EIPITTGIRISN 131
            I ++    + +
Sbjct: 122 SIELSDVCAVYD 133


>gi|169831905|ref|YP_001717887.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638749|gb|ACA60255.1| flagellar hook capping protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 134

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +E     +      S     QD FLKLL+ Q+K+  P  P    + + Q A F  +E+
Sbjct: 6   VGSEYALPGKTTPPRPSSGLFDQDTFLKLLVAQLKNPSPFSPPDTDKMMEQAAQFGMLER 65

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTE 120
            V++   L+E+ ++  LAQA+  +G+ +     D  ISG V  + ++  G   + +    
Sbjct: 66  LVKVEEALREMSRAAYLAQAAEIVGREVVVLAGDRQISGTVERVLLNERGA-RVVLGAES 124

Query: 121 IPITTGIRI 129
             I   + +
Sbjct: 125 YDINRVVEV 133


>gi|20807882|ref|NP_623053.1| flagellar hook capping protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516447|gb|AAM24657.1| Flagellar hook capping protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 131

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 1   MEINTEVNP-TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M +NT  +       +K  +K  LG+D FL LL+TQ+K+QDP  P+   E +AQLA FS 
Sbjct: 1   MNVNTNYSVLPPSNQNKVTTKSKLGKDDFLMLLVTQLKNQDPLNPVDDKEFLAQLAQFSA 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGS-----ISGVVNAIQVSSTGLT 112
           +EQ   +N +   +          + IGKN+  T  DG+     + G V+A+     G  
Sbjct: 61  LEQMQNLNESFNSVKA-------IALIGKNVYATINDGNGNYKEVFGKVDAV-YRENGQY 112

Query: 113 AITVDNTEIPITTGIRISN 131
            + V   +IP+     ++ 
Sbjct: 113 FLKVKGLDIPLDAVRAVTE 131


>gi|269836574|ref|YP_003318802.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785837|gb|ACZ37980.1| flagellar hook capping protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 150

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 3   INTEVNPTQQEFSKSK--SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  + NP     S +       LG+  FL LL  Q+++QDP  PM+ +E +AQLA  + +
Sbjct: 6   VTNQTNPGTDAASSTTFSPADRLGKQEFLMLLTAQLRNQDPLRPMEDTEFIAQLAQLNSL 65

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITV 116
           EQ  QMN TL  L++ + LAQ +S IG+++T  D    G I GVV+ + +   G   + V
Sbjct: 66  EQMQQMNETLSTLVEMSVLAQTASLIGRHVTALDPSGGGVIKGVVSDVTIHE-GTPVLNV 124

Query: 117 DNTEIPITTGIRIS 130
             T +P+   + I 
Sbjct: 125 GGTAVPLAHVVSIG 138


>gi|147678417|ref|YP_001212632.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
 gi|146274514|dbj|BAF60263.1| flagellar hook capping protein [Pelotomaculum thermopropionicum SI]
          Length = 132

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSK-KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M++N+  +   +    S+   K L ++AFL+L + Q+K+QDP  P  ++  + QL+ FS 
Sbjct: 1   MQVNSVTSEYYRPPDNSREPLKALDKNAFLQLFVAQLKNQDPLSPQDSNTFITQLSQFSM 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVD 117
           +EQ   +N  +    +   L +A++ +G+ +     DG +SG V  + V   G   + V+
Sbjct: 61  LEQLASLNEEVTLARRFQELGEAAALLGRQVKVQTGDGDVSGQVEKVAVVE-GEVRLFVN 119

Query: 118 NTEIPITTGIRI 129
            T   +     +
Sbjct: 120 GTGYGLDKVTEV 131


>gi|15964437|ref|NP_384790.1| flagellar basal body rod modification protein [Sinorhizobium
           meliloti 1021]
 gi|307311579|ref|ZP_07591220.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
 gi|307318934|ref|ZP_07598365.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
 gi|10998533|gb|AAG25963.1|AF300968_5 FlgD [Sinorhizobium meliloti]
 gi|15073614|emb|CAC45256.1| Putative basal-body rod modification protein [Sinorhizobium
           meliloti 1021]
 gi|306895348|gb|EFN26103.1| flagellar hook capping protein [Sinorhizobium meliloti AK83]
 gi|306899596|gb|EFN30225.1| flagellar hook capping protein [Sinorhizobium meliloti BL225C]
          Length = 138

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 2   EINTEVNPT--QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
             +    PT    + +   S  TL  ++FLKLL+ Q+K+QDPT+PM A++Q+AQLA FSQ
Sbjct: 8   NTSNSYTPTVSATDSAGDASAATLNYESFLKLLVAQMKNQDPTQPMDATQQIAQLATFSQ 67

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
           +EQ+++ N  L+ LL+   L++A + IG+ +T+ADG  +GVV  +++ S G+ A+     
Sbjct: 68  VEQTIKTNKNLESLLQRTALSEADAVIGRTVTSADGKTTGVVKEVKLYSDGIIAVLDTGK 127

Query: 120 EIPITTGI 127
           E+ I  G+
Sbjct: 128 ELVIGPGV 135


>gi|323703175|ref|ZP_08114828.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323531834|gb|EGB21720.1| flagellar hook capping protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 138

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 5/133 (3%)

Query: 1   MEINTEVNPT--QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           M +N+  N        S  K  KTL +DAFL++++ Q+K+QDPT PM   + + Q+A F+
Sbjct: 1   MAVNSVNNDLFYDNNKSPRKPVKTLDKDAFLQIMVAQLKYQDPTSPMDNDKMIEQIAQFT 60

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116
            +EQ   +NS  ++L     L   SS IG  +T  N D +ISG V  + + +TG   I V
Sbjct: 61  TLEQITNLNSNFEKLYSLQQLGYGSSLIGYGVTLQNGDENISGTVQKVTMDATG-VKIWV 119

Query: 117 DNTEIPITTGIRI 129
            +    ++    +
Sbjct: 120 ADKPYDLSQITSV 132


>gi|114706623|ref|ZP_01439524.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
           HTCC2506]
 gi|114538015|gb|EAU41138.1| flagellar basal-body rod modification protein D [Fulvimarina pelagi
           HTCC2506]
          Length = 136

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/128 (30%), Positives = 69/128 (53%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +        Q          +  DAFL+LL+ Q+K+QDP  P +++E +AQ A F+ +EQ
Sbjct: 9   VTQAQGAAAQNGITKGGAPEMDYDAFLQLLVAQMKNQDPLNPAESTEYIAQFATFANVEQ 68

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
           S+Q N+ L+ ++  + L QA + IG+ +T+ DG+  G V +I+    G+ A       I 
Sbjct: 69  SIQTNTRLESMMTVSALTQADALIGRTLTSLDGATRGTVTSIRAVDGGIQATIEGGETIM 128

Query: 123 ITTGIRIS 130
           +  G+ ++
Sbjct: 129 LGDGVSVA 136


>gi|297584042|ref|YP_003699822.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
 gi|297142499|gb|ADH99256.1| flagellar hook capping protein [Bacillus selenitireducens MLS10]
          Length = 161

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 14/130 (10%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           +K      +G+DAFLKLLITQ+++QDP +PM+  E ++Q+A FS +EQ   MN  + + L
Sbjct: 23  AKGTGDSEMGKDAFLKLLITQLQNQDPLDPMEDKEFISQMANFSSLEQMTNMNENMNKFL 82

Query: 75  KSNNLAQ---ASSYIGKNITNAD-----------GSISGVVNAIQVSSTGLTAITVDNTE 120
           +S   +Q    S  IGK I   +            ++S +V A++      T +T    E
Sbjct: 83  ESQQQSQFFSHSDMIGKQIEWQEEVKNENGDKRMETMSAIVQAVKFKDGIATILTESGKE 142

Query: 121 IPITTGIRIS 130
           + +    +I+
Sbjct: 143 LSVDDIQKIA 152


>gi|134300241|ref|YP_001113737.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
 gi|134052941|gb|ABO50912.1| flagellar hook capping protein [Desulfotomaculum reducens MI-1]
          Length = 185

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 1   MEINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           ME+N   N     +     +S KTL +DAFL+++I Q+++QDP+ PM +S+ + Q+A+F+
Sbjct: 1   MEVNQTNNSDLYYENRKTKESVKTLDKDAFLQIMIAQLRYQDPSSPMDSSKFIEQMAMFT 60

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITV 116
            +EQ   +N+ ++ L     L  ASS IGK +     +  + G V  + +       I V
Sbjct: 61  TLEQMTNLNTNMERLYHLQELNHASSLIGKRVNLIAEEEQVIGEVERVTLGEN-SVNIWV 119

Query: 117 DNTEIPITTGIRI 129
                 +   I +
Sbjct: 120 AGHPYSLDQVISV 132


>gi|167464162|ref|ZP_02329251.1| Flagellar hook capping protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 197

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 10/134 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +    ++ +  +S    +LG+D FLK+LI Q+ +Q+P +PM   E +AQ+A F+ +EQ  
Sbjct: 23  SVNQKSETKTMRSGGNSSLGKDDFLKILIAQLVNQNPMDPMNDKEFIAQMAQFTAVEQMT 82

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVD 117
            M   + +L +S  L  AS+ IGK+++           +  GVV+AI +   G+  + + 
Sbjct: 83  FMAEQMYDLRQS--LGGASTLIGKHVSYLTVNEKQEVITKQGVVDAI-IMKNGMAHVVIG 139

Query: 118 NTEIPITTGIRISN 131
             EIPI    R+ +
Sbjct: 140 KEEIPIDLITRVGD 153


>gi|239834422|ref|ZP_04682750.1| flagellar basal body rod modification protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822485|gb|EEQ94054.1| flagellar basal body rod modification protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 136

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/114 (47%), Positives = 84/114 (73%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           + +K ++  ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ +
Sbjct: 23  AANKASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIAN 82

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            +L QA  +IG+ +TNADGSISGVV ++ + S G+ A   D   + I  G++IS
Sbjct: 83  TSLTQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136


>gi|319781660|ref|YP_004141136.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167548|gb|ADV11086.1| flagellar hook capping protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 135

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 91/129 (70%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +++ T +     + + S SK  +   +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3   VDMTTTIPTGANQATASTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQ N+ L ++++S+ L+QA + IG++IT+ADG  +G V +++++S GL A+  + TE
Sbjct: 63  EQSVQTNTKLNQIMQSSALSQADALIGRSITSADGLTTGTVASVRLASNGLIAVLQNGTE 122

Query: 121 IPITTGIRI 129
           + +  G+ +
Sbjct: 123 VAVGPGVSV 131


>gi|319409164|emb|CBI82808.1| Flagellar hook capping protein [Bartonella schoenbuchensis R1]
          Length = 160

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
           ++KK    D F+KLL+ Q+ +QDPT PM ++E VAQLA FS +EQ+++ N  L ++L + 
Sbjct: 26  EAKKDTDFDTFIKLLVAQMNNQDPTNPMDSTEFVAQLASFSVVEQTIKTNDKLDQILSNG 85

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           ++  A  Y+GK I   D     I G V +I + + G+ A   +N ++ I  GI +
Sbjct: 86  SINGAEGYVGKYIQFEDADGKIIEGYVESIDIYTDGMVATLDNNEKVLIGPGITV 140


>gi|153011503|ref|YP_001372717.1| flagellar basal body rod modification protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563391|gb|ABS16888.1| flagellar hook capping protein [Ochrobactrum anthropi ATCC 49188]
          Length = 136

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 82/111 (73%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K ++  ++FLKLL+TQ+++QDPT+PM A++ V+QLA FS +EQ+VQMNS L+ L+ + +L
Sbjct: 26  KASVDYNSFLKLLVTQMQNQDPTQPMDATQYVSQLATFSNVEQAVQMNSKLETLIANTSL 85

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            QA  +IG+ +TNADGSISGVV ++ + S G+ A   D   + I  G++IS
Sbjct: 86  TQAEGWIGRTLTNADGSISGVVKSVTIQSNGMLAELEDGKTLMIGAGVKIS 136


>gi|125972993|ref|YP_001036903.1| flagellar hook capping protein [Clostridium thermocellum ATCC
           27405]
 gi|281417204|ref|ZP_06248224.1| flagellar hook capping protein [Clostridium thermocellum JW20]
 gi|125713218|gb|ABN51710.1| flagellar hook capping protein [Clostridium thermocellum ATCC
           27405]
 gi|281408606|gb|EFB38864.1| flagellar hook capping protein [Clostridium thermocellum JW20]
          Length = 323

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 16/130 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           +    S  ++   LG+D FL LLITQ+++QDP  P+   E ++Q+A FS +EQ   +N +
Sbjct: 18  STTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77

Query: 70  LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121
                   +  +A   IGK IT           G + G+V ++++   G   + V+  ++
Sbjct: 78  F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129

Query: 122 PITTGIRISN 131
           P+   + +S 
Sbjct: 130 PVDNVLSVSE 139


>gi|256004790|ref|ZP_05429765.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
 gi|255991240|gb|EEU01347.1| flagellar hook capping protein [Clostridium thermocellum DSM 2360]
 gi|316940771|gb|ADU74805.1| flagellar hook capping protein [Clostridium thermocellum DSM 1313]
          Length = 323

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 16/130 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                S  ++   LG+D FL LLITQ+++QDP  P+   E ++Q+A FS +EQ   +N +
Sbjct: 18  NTTNKSTQRNTGELGKDEFLNLLITQLQYQDPLNPVDDKEFISQMAQFSALEQMQNLNKS 77

Query: 70  LQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121
                   +  +A   IGK IT           G + G+V ++++   G   + V+  ++
Sbjct: 78  F-------SATKAFGMIGKYITGTTSNGSDSGAGFVEGIVRSVKM-ENGKILLEVNGLDV 129

Query: 122 PITTGIRISN 131
           P+   + +S 
Sbjct: 130 PVDNVLSVSE 139


>gi|194014528|ref|ZP_03053145.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
 gi|194013554|gb|EDW23119.1| flagellar hook capping protein [Bacillus pumilus ATCC 7061]
          Length = 148

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V  T       K   TLG+D FLK+L+TQ+++QDPT P+   E V QLA FS +EQ 
Sbjct: 8   NRTVAQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67

Query: 64  VQMNSTLQELLKSNNL--------AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113
             MN ++ +L +  +              +IGK ++    D  ISG V +++  +     
Sbjct: 68  TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127

Query: 114 ITVDNTEIPITTGIRISN 131
              D T+I       +  
Sbjct: 128 YLEDGTKISPWDVTAVGE 145


>gi|289578427|ref|YP_003477054.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
 gi|289528140|gb|ADD02492.1| flagellar hook capping protein [Thermoanaerobacter italicus Ab9]
          Length = 131

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 8/135 (5%)

Query: 1   MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           ME+NT  + +     S+  SKK LG+D FLKLL+ Q+K+Q+P  PM   E +AQLA FS 
Sbjct: 1   MEVNTNYSFSNVYNNSEITSKKQLGKDDFLKLLVAQLKNQNPLNPMDDKEFIAQLAQFST 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITV 116
           +EQ   +N++   +   N L +    I   +T+ +G    + G V+A+         + V
Sbjct: 61  LEQMQNLNTSFSAVRAINLLGKN---IYATVTDNNGESKAVEGKVDAV-YKQNEEYFLEV 116

Query: 117 DNTEIPITTGIRISN 131
           +  ++P+     +S 
Sbjct: 117 NGIDVPLDAVTAVSE 131


>gi|302392389|ref|YP_003828209.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
 gi|302204466|gb|ADL13144.1| flagellar hook capping protein [Acetohalobium arabaticum DSM 5501]
          Length = 138

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +      +    +++    +G+D FL+L +TQ+K+Q+P EPM   E +AQ A F+ MEQ 
Sbjct: 8   SASNANVEGTGKQTEDSNKMGKDEFLELFVTQLKNQNPLEPMDNKEFIAQTAQFTSMEQM 67

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAITVDNT 119
             MN  L++ L    L Q SS IGK +    +++   I+G V  ++++ +G   + ++  
Sbjct: 68  KNMNQNLEKFLGMQKLTQVSSLIGKEVKALDSDSGEEITGEVEKVKMADSG-PKLIINGN 126

Query: 120 EIPITTGIRI 129
           E  + +   I
Sbjct: 127 EYEMGSVNEI 136


>gi|306841281|ref|ZP_07473992.1| flagellar basal body rod modification protein [Brucella sp. BO2]
 gi|306288683|gb|EFM60014.1| flagellar basal body rod modification protein [Brucella sp. BO2]
          Length = 137

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 87/127 (68%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            T    T    + + +K ++  D+FLKLL+TQ+++QDPT+PM  ++ V+QLA FS +EQS
Sbjct: 11  TTNSASTAGNSTSAANKASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQS 70

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
           VQMNS L+ L+ + +L QA  +IG+ +T+ADGSI+GVV ++ + S+G+ A   D   + I
Sbjct: 71  VQMNSKLETLIANTSLTQAEGWIGRTLTSADGSITGVVKSVTIQSSGMLAELEDGKTLTI 130

Query: 124 TTGIRIS 130
             G+RIS
Sbjct: 131 GEGVRIS 137


>gi|260466598|ref|ZP_05812786.1| flagellar hook capping protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029604|gb|EEW30892.1| flagellar hook capping protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 135

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 90/129 (69%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +++ T +       + S SK  +   +FLKLLI ++K+QDPT+PM +++ VAQLA FSQ+
Sbjct: 3   VDMTTTIPVGSNSTTTSTSKTAVDYQSFLKLLIAEMKNQDPTKPMDSTQYVAQLATFSQV 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQ N+ L+++++S+ L+QA + IG+ IT+ADG  +G V ++ ++S GL A+  D T+
Sbjct: 63  EQSVQTNTKLEQIMQSSALSQADAIIGRTITSADGKTTGTVASVTLASNGLIAVLQDGTQ 122

Query: 121 IPITTGIRI 129
           +P+  G+ I
Sbjct: 123 VPVGAGVSI 131


>gi|17988508|ref|NP_541141.1| flagellar basal body rod modification protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|23500849|ref|NP_700289.1| flagellar basal body rod modification protein [Brucella suis 1330]
 gi|62317952|ref|YP_223805.1| flagellar basal body rod modification protein [Brucella abortus bv.
           1 str. 9-941]
 gi|83269929|ref|YP_419220.1| flagellar basal body rod modification protein [Brucella melitensis
           biovar Abortus 2308]
 gi|148557915|ref|YP_001257999.1| flagellar basal body rod modification protein [Brucella ovis ATCC
           25840]
 gi|161621177|ref|YP_001595063.1| flagellar basal body rod modification protein [Brucella canis ATCC
           23365]
 gi|163845452|ref|YP_001623107.1| flagellar basal body rod modification protein [Brucella suis ATCC
           23445]
 gi|189023203|ref|YP_001932944.1| flagellar basal body rod modification protein [Brucella abortus
           S19]
 gi|225628424|ref|ZP_03786458.1| flagellar basal body rod modification protein [Brucella ceti str.
           Cudo]
 gi|225686880|ref|YP_002734852.1| flagellar basal body rod modification protein [Brucella melitensis
           ATCC 23457]
 gi|254691616|ref|ZP_05154870.1| flagellar basal body rod modification protein [Brucella abortus bv.
           6 str. 870]
 gi|254695088|ref|ZP_05156916.1| flagellar basal body rod modification protein [Brucella abortus bv.
           3 str. Tulya]
 gi|254698184|ref|ZP_05160012.1| flagellar basal body rod modification protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254699258|ref|ZP_05161086.1| flagellar basal body rod modification protein [Brucella suis bv. 5
           str. 513]
 gi|254702378|ref|ZP_05164206.1| flagellar basal body rod modification protein [Brucella suis bv. 3
           str. 686]
 gi|254706501|ref|ZP_05168329.1| flagellar basal body rod modification protein [Brucella
           pinnipedialis M163/99/10]
 gi|254711214|ref|ZP_05173025.1| flagellar basal body rod modification protein [Brucella
           pinnipedialis B2/94]
 gi|254711813|ref|ZP_05173624.1| flagellar basal body rod modification protein [Brucella ceti
           M644/93/1]
 gi|254714882|ref|ZP_05176693.1| flagellar basal body rod modification protein [Brucella ceti
           M13/05/1]
 gi|254731629|ref|ZP_05190207.1| flagellar basal body rod modification protein [Brucella abortus bv.
           4 str. 292]
 gi|256015893|ref|YP_003105902.1| flagellar basal body rod modification protein [Brucella microti CCM
           4915]
 gi|256030157|ref|ZP_05443771.1| flagellar basal body rod modification protein [Brucella
           pinnipedialis M292/94/1]
 gi|256042861|ref|ZP_05445807.1| flagellar basal body rod modification protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|256059809|ref|ZP_05450004.1| flagellar basal body rod modification protein [Brucella neotomae
           5K33]
 gi|256112181|ref|ZP_05453102.1| flagellar basal body rod modification protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|256158336|ref|ZP_05456240.1| flagellar basal body rod modification protein [Brucella ceti
           M490/95/1]
 gi|256252730|ref|ZP_05458266.1| flagellar basal body rod modification protein [Brucella ceti B1/94]
 gi|256256803|ref|ZP_05462339.1| flagellar basal body rod modification protein [Brucella abortus bv.
           9 str. C68]
 gi|256261983|ref|ZP_05464515.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260166791|ref|ZP_05753602.1| flagellar basal body rod modification protein [Brucella sp. F5/99]
 gi|260544137|ref|ZP_05819958.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
 gi|260564098|ref|ZP_05834583.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
 gi|260568719|ref|ZP_05839188.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
 gi|260757247|ref|ZP_05869595.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
 gi|260759388|ref|ZP_05871736.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
 gi|260762631|ref|ZP_05874963.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883051|ref|ZP_05894665.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
 gi|261215439|ref|ZP_05929720.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
 gi|261216572|ref|ZP_05930853.1| flagellar hook capping protein [Brucella ceti M13/05/1]
 gi|261219808|ref|ZP_05934089.1| flagellar hook capping protein [Brucella ceti B1/94]
 gi|261313955|ref|ZP_05953152.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
 gi|261318805|ref|ZP_05958002.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
 gi|261319442|ref|ZP_05958639.1| flagellar hook capping protein [Brucella ceti M644/93/1]
 gi|261323789|ref|ZP_05962986.1| flagellar hook capping protein [Brucella neotomae 5K33]
 gi|261749697|ref|ZP_05993406.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
 gi|261752941|ref|ZP_05996650.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
 gi|261756168|ref|ZP_05999877.1| flagellar hook capping protein [Brucella sp. F5/99]
 gi|265987188|ref|ZP_06099745.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
 gi|265989296|ref|ZP_06101853.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993608|ref|ZP_06106165.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996851|ref|ZP_06109408.1| flagellar hook capping protein [Brucella ceti M490/95/1]
 gi|297250156|ref|ZP_06933857.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
 gi|17984300|gb|AAL53405.1| basal-body rod modification protein flgd [Brucella melitensis bv. 1
           str. 16M]
 gi|23464513|gb|AAN34294.1| basal-body rod modification protein FlgD, putative [Brucella suis
           1330]
 gi|62198145|gb|AAX76444.1| hypothetical FlgD basal-body rod modification protein [Brucella
           abortus bv. 1 str. 9-941]
 gi|82940203|emb|CAJ13259.1| ATP/GTP-binding site motif A (P-loop):Flagellar hook capping
           protein [Brucella melitensis biovar Abortus 2308]
 gi|148369200|gb|ABQ62072.1| putative basal-body rod modification protein FlgD [Brucella ovis
           ATCC 25840]
 gi|161337988|gb|ABX64292.1| flagellar hook capping protein [Brucella canis ATCC 23365]
 gi|163676175|gb|ABY40285.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021777|gb|ACD74498.1| Flagellar hook capping protein [Brucella abortus S19]
 gi|225616270|gb|EEH13318.1| flagellar basal body rod modification protein [Brucella ceti str.
           Cudo]
 gi|225642985|gb|ACO02898.1| flagellar hook capping protein [Brucella melitensis ATCC 23457]
 gi|255998553|gb|ACU50240.1| flagellar basal body rod modification protein [Brucella microti CCM
           4915]
 gi|260097408|gb|EEW81282.1| flagellar hook capping protein [Brucella abortus NCTC 8038]
 gi|260151741|gb|EEW86834.1| flagellar hook capping protein [Brucella melitensis bv. 1 str. 16M]
 gi|260155384|gb|EEW90465.1| flagellar hook capping protein [Brucella suis bv. 4 str. 40]
 gi|260669706|gb|EEX56646.1| flagellar hook capping protein [Brucella abortus bv. 4 str. 292]
 gi|260673052|gb|EEX59873.1| flagellar hook capping protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677355|gb|EEX64176.1| flagellar hook capping protein [Brucella abortus bv. 6 str. 870]
 gi|260872579|gb|EEX79648.1| flagellar hook capping protein [Brucella abortus bv. 9 str. C68]
 gi|260917046|gb|EEX83907.1| flagellar hook capping protein [Brucella abortus bv. 3 str. Tulya]
 gi|260918392|gb|EEX85045.1| flagellar hook capping protein [Brucella ceti B1/94]
 gi|260921661|gb|EEX88229.1| flagellar hook capping protein [Brucella ceti M13/05/1]
 gi|261292132|gb|EEX95628.1| flagellar hook capping protein [Brucella ceti M644/93/1]
 gi|261298028|gb|EEY01525.1| flagellar hook capping protein [Brucella pinnipedialis B2/94]
 gi|261299769|gb|EEY03266.1| flagellar hook capping protein [Brucella neotomae 5K33]
 gi|261302981|gb|EEY06478.1| flagellar hook capping protein [Brucella pinnipedialis M163/99/10]
 gi|261736152|gb|EEY24148.1| flagellar hook capping protein [Brucella sp. F5/99]
 gi|261739450|gb|EEY27376.1| flagellar hook capping protein [Brucella suis bv. 5 str. 513]
 gi|261742694|gb|EEY30620.1| flagellar hook capping protein [Brucella suis bv. 3 str. 686]
 gi|262551148|gb|EEZ07309.1| flagellar hook capping protein [Brucella ceti M490/95/1]
 gi|262764478|gb|EEZ10510.1| flagellar hook capping protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262999965|gb|EEZ12655.1| flagellar hook capping protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263091467|gb|EEZ16003.1| flagellar hook capping protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659385|gb|EEZ29646.1| flagellar hook capping protein [Brucella pinnipedialis M292/94/1]
 gi|297174025|gb|EFH33389.1| flagellar hook capping protein [Brucella abortus bv. 5 str. B3196]
 gi|326411298|gb|ADZ68362.1| flagellar basal body rod modification protein [Brucella melitensis
           M28]
 gi|326554587|gb|ADZ89226.1| flagellar basal body rod modification protein [Brucella melitensis
           M5-90]
          Length = 137

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/111 (50%), Positives = 82/111 (73%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K ++  D+FLKLL+TQ+++QDPT+PM  ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27  KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            QA  +IG+ +TNADGSISGVV ++ + S+G+ A   D   + I  G+RIS
Sbjct: 87  TQAEGWIGRTLTNADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137


>gi|126653742|ref|ZP_01725660.1| flagellar basal body rod modification protein D [Bacillus sp.
           B14905]
 gi|126589706|gb|EAZ83842.1| flagellar basal body rod modification protein D [Bacillus sp.
           B14905]
          Length = 229

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              ++ +K      LG+DAFL+LLITQ++HQDPT PM   E ++Q+A FS +EQ   M  
Sbjct: 21  SNYRKPTKQTGNSELGKDAFLQLLITQLQHQDPTNPMNDREFISQMAQFSSLEQMQNMTK 80

Query: 69  TLQELLKSNNLAQASSY---IGKNITNAD-------------GSISGVVNAIQVSSTGLT 112
            ++ LL S    Q  +Y   +GK +   +                SGV+ +++     + 
Sbjct: 81  AVESLLASQQQTQMMNYATFVGKEVKWHEITDKTDEKGDPVVNEGSGVIESLKFVDGSVV 140

Query: 113 AITVDNTEIPITTGIRI 129
               D  EI       I
Sbjct: 141 FKLADGKEITPGNISGI 157


>gi|256750747|ref|ZP_05491632.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750330|gb|EEU63349.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 131

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 73/133 (54%), Gaps = 8/133 (6%)

Query: 1   MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M+INT  N T    ++ + SK  LG+D FLKLL+TQ+K+QDP  PM   E +AQLA FS 
Sbjct: 1   MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116
           +EQ   MNS++  +   N + +    I   IT+ +G   ++ G V+ +     G   + V
Sbjct: 61  LEQMQNMNSSINAIRAINLIGKN---IYATITDNNGNSRTVIGKVDVV-YKQNGEYFLEV 116

Query: 117 DNTEIPITTGIRI 129
           +  +IP+     +
Sbjct: 117 NGIDIPLDAVTAV 129


>gi|254720778|ref|ZP_05182589.1| flagellar basal body rod modification protein [Brucella sp. 83/13]
 gi|265985836|ref|ZP_06098571.1| flagellar hook capping protein [Brucella sp. 83/13]
 gi|306840131|ref|ZP_07472916.1| flagellar basal body rod modification protein [Brucella sp. NF
           2653]
 gi|306845414|ref|ZP_07477988.1| flagellar basal body rod modification protein [Brucella sp. BO1]
 gi|264664428|gb|EEZ34689.1| flagellar hook capping protein [Brucella sp. 83/13]
 gi|306274157|gb|EFM55973.1| flagellar basal body rod modification protein [Brucella sp. BO1]
 gi|306404776|gb|EFM61070.1| flagellar basal body rod modification protein [Brucella sp. NF
           2653]
          Length = 137

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 82/111 (73%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K ++  D+FLKLL+TQ+++QDPT+PM  ++ V+QLA FS +EQSVQMNS L+ L+ + +L
Sbjct: 27  KASVDYDSFLKLLVTQMQNQDPTQPMDPTQYVSQLATFSNVEQSVQMNSKLETLIANTSL 86

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            QA  +IG+ +T+ADGSISGVV ++ + S+G+ A   D   + I  G+RIS
Sbjct: 87  TQAEGWIGRTLTSADGSISGVVKSVTIQSSGMLAELEDGKTLTIGEGVRIS 137


>gi|315186382|gb|EFU20142.1| flagellar hook capping protein [Spirochaeta thermophila DSM 6578]
          Length = 145

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K+ LG+D FLKLL+ Q+ HQDPT+P++  E +AQ+A FS +EQ   M+    +L      
Sbjct: 33  KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92

Query: 80  AQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           +QA S +GK +     D  ISGVV  ++        + V+     +     +
Sbjct: 93  SQAFSLLGKTVVIKNGDEEISGVVEEVRGRE--FPQLLVNGRYFDMNQIESV 142


>gi|15639715|ref|NP_219165.1| flagellar basal body rod modification protein [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189025953|ref|YP_001933725.1| flagellar basal body rod modification protein [Treponema pallidum
           subsp. pallidum SS14]
 gi|2196902|gb|AAB61259.1| FlgD [Treponema pallidum]
 gi|3323034|gb|AAC65697.1| flagellar hook assembly scaffolding protein (flgD) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018528|gb|ACD71146.1| flagellar hook assembly scaffolding protein [Treponema pallidum
           subsp. pallidum SS14]
 gi|291060092|gb|ADD72827.1| flagellar hook capping protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 153

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M++   V   Q E     +K+ LG+D FL LLI Q+ HQDPT PM+ ++ +AQ+A FS +
Sbjct: 21  MDV--RVINKQLEAGARSAKRELGKDDFLHLLIAQLTHQDPTAPMQDTQFIAQMAQFSSL 78

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGK--NITNADGSISGVVNAIQVSSTGLTAITVDN 118
           EQ   M++ +++L       +A   +GK   +T AD ++ G+++A+  +      + V +
Sbjct: 79  EQMANMSAQVEKLGTLFGNTEALQAVGKMVEVTEADNTVRGLISAVTRAD--KPQVRVGS 136

Query: 119 TEIPITTGIRISN 131
                     I++
Sbjct: 137 HWYEWEHVKVIAD 149


>gi|15887924|ref|NP_353605.1| flagellar basal body rod modification protein [Agrobacterium
           tumefaciens str. C58]
 gi|15155520|gb|AAK86390.1| hook formation protein [Agrobacterium tumefaciens str. C58]
          Length = 157

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 80/123 (65%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 S  K+  +L  D+FLKLLI Q+K+QDPT PM A +Q++QLA FSQ+EQ+++ N+
Sbjct: 15  ANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQLASFSQVEQTIKTNT 74

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
            L+ +L++  L +AS  +GK + +AD  ++GVV  +QV S G+ A+T    ++ +  G+ 
Sbjct: 75  HLKSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAVTEAGDKVLLQAGVV 134

Query: 129 ISN 131
            SN
Sbjct: 135 FSN 137


>gi|295399816|ref|ZP_06809797.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111672|ref|YP_003989988.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
 gi|294978219|gb|EFG53816.1| flagellar hook capping protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216773|gb|ADP75377.1| flagellar hook capping protein [Geobacillus sp. Y4.1MC1]
          Length = 140

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           +    + LG+D FLK+L+ Q+++QDP  PM+  E +AQ+A FS +EQ + ++S  + L++
Sbjct: 19  RKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMANFSTLEQMINISSMFERLMQ 78

Query: 76  SNN---LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           + N   L + S +IGKN+     + + SGVV ++      +     + + I  +  I++
Sbjct: 79  TQNNQALLRYSEWIGKNVYWQEEENTKSGVVKSVLQKDNQIFLELDNGSTINASLVIKV 137


>gi|222530132|ref|YP_002574014.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456979|gb|ACM61241.1| flagellar hook capping protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 164

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT ++ + Q  + S  K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ 
Sbjct: 9   NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118
             +N + + L          S IG+ +   +      +I G +++I+V       + V+ 
Sbjct: 69  QNLNESFEFLKAQ-------SMIGRYVVATNPADTSKTIEGRIDSIRV-DGSKVYLKVNG 120

Query: 119 TEIPITTGIRIS 130
           TE+       + 
Sbjct: 121 TEVLFDNVKEVY 132


>gi|307264874|ref|ZP_07546436.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920132|gb|EFN50344.1| flagellar hook capping protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 131

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 16/139 (11%)

Query: 1   MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M+INT  N T    ++ + SK  LG+D FLKLL+TQ+K+QDP +PM   E +AQLA FS 
Sbjct: 1   MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLKPMDDREFIAQLAQFST 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112
           +EQ   MNS+        N  +A + IGKNI            +++G V+ +     G  
Sbjct: 61  LEQMQNMNSSF-------NAVRAINLIGKNIYATITDNNGNSRTVTGKVDVV-YKQNGEY 112

Query: 113 AITVDNTEIPITTGIRISN 131
            + V+  ++P+     +S 
Sbjct: 113 FLQVNGIDVPVDAVTAVSE 131


>gi|16078691|ref|NP_389510.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309505|ref|ZP_03591352.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313829|ref|ZP_03595634.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318752|ref|ZP_03600046.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221323024|ref|ZP_03604318.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|321315394|ref|YP_004207681.1| flagellar basal body rod modification protein [Bacillus subtilis
           BSn5]
 gi|140659|sp|P23455|YLXG_BACSU RecName: Full=FlaA locus uncharacterized protein ylxG; AltName:
           Full=ORF 8
 gi|39911|emb|CAA39527.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
 gi|2634000|emb|CAB13501.1| flagellar hook assembly protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|320021668|gb|ADV96654.1| flagellar basal body rod modification protein [Bacillus subtilis
           BSn5]
          Length = 140

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I++E    ++  + S +  +LG+D FLK+L+TQ+++QDP  P+   E ++Q+A FS +EQ
Sbjct: 4   ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPIDDKEFISQMATFSSLEQ 63

Query: 63  SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117
            + +N+T+ + +++ +       ++GK ++  DG      +G V++++        +  D
Sbjct: 64  MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123

Query: 118 NTEIPITTGIRIS 130
            TEI     + + 
Sbjct: 124 GTEISPANVMSVG 136


>gi|299534780|ref|ZP_07048110.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
 gi|298729868|gb|EFI70413.1| hypothetical protein BFZC1_02077 [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 16/137 (11%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              ++ +K      LG+DAFLKLLITQ++HQDPT PM   E ++Q+A FS +EQ   M  
Sbjct: 20  SNYKKPTKQTGNSELGKDAFLKLLITQLQHQDPTNPMDDREFISQMAQFSSLEQMQNMTK 79

Query: 69  TLQ---ELLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTGLT 112
            ++      + + +   +++IGK +   +                 GV+ +++     + 
Sbjct: 80  AMESLLSSQQQSQMMNYATFIGKEVKWHEITEEKDEKENPVVNEGIGVIESLKFVDGSVV 139

Query: 113 AITVDNTEIPITTGIRI 129
               D  EI       I
Sbjct: 140 FKLADGKEISPGNISGI 156


>gi|296330842|ref|ZP_06873317.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674360|ref|YP_003866032.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296151847|gb|EFG92721.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412604|gb|ADM37723.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 140

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 75/133 (56%), Gaps = 5/133 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I++E    ++  + + S  +LG+D FLK+L+TQ+++QDP  P+   E ++Q+A FS +EQ
Sbjct: 4   ISSEYKLPEKTSTVTTSNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63

Query: 63  SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117
            + MN T+ + +++ +       ++GK ++  DG      +G V++++ S      I  D
Sbjct: 64  MMNMNKTMTQFVENQDPFTSYVDWLGKEVSWTDGQSTTDKTGTVSSVKHSKGSYYLILDD 123

Query: 118 NTEIPITTGIRIS 130
            TEI     + ++
Sbjct: 124 GTEINPWNVMSVA 136


>gi|187918158|ref|YP_001883721.1| flagellar basal body rod modification protein [Borrelia hermsii
           DAH]
 gi|119861006|gb|AAX16801.1| basal-body rod modification protein FlgD [Borrelia hermsii DAH]
          Length = 144

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           +  +  +      LG+D FLKLLITQ+K+QDPT+PMK  E +AQ+A FS +EQ   M+ +
Sbjct: 20  SNSKVQRGVKGSNLGRDDFLKLLITQLKYQDPTDPMKDKEFIAQMAQFSALEQMTNMSKS 79

Query: 70  LQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
            + L  +    +    +GK +         I G V  I+  +  +  I +D         
Sbjct: 80  FESLSSALGANKDLDLLGKIVEFEHTDGEIIKGKVTNIK--TGVVPQIMIDGKYYVYNNI 137

Query: 127 IRIS 130
           + + 
Sbjct: 138 LSVG 141


>gi|291484180|dbj|BAI85255.1| flagellar basal body rod modification protein [Bacillus subtilis
           subsp. natto BEST195]
          Length = 140

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I++E    ++  + S +  +LG+D FLK+L+TQ+++QDP  P+   E ++Q+A FS +EQ
Sbjct: 4   ISSEYKLPEKTNTVSTNNSSLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQ 63

Query: 63  SVQMNSTLQELLKSNN-LAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVD 117
            + +N+T+ + +++ +       ++GK ++  DG      +G V++++        +  D
Sbjct: 64  MMNLNTTMTQFVENQDPFTTYVDWMGKEVSWTDGKSATDKTGTVSSVKHFKGNYYLVLDD 123

Query: 118 NTEIPITTGIRIS 130
            TEI     + + 
Sbjct: 124 GTEISPANVMSVG 136


>gi|304392488|ref|ZP_07374428.1| flagellar hook capping protein [Ahrensia sp. R2A130]
 gi|303295118|gb|EFL89478.1| flagellar hook capping protein [Ahrensia sp. R2A130]
          Length = 131

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 80/130 (61%), Gaps = 2/130 (1%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++  +  + T    +++  K  +  D+FLKLL+ ++++QDPT+PM++SE VAQLA FS +
Sbjct: 4   IDAISATSTTSTGTAQAAQKAQVDYDSFLKLLVAELENQDPTKPMESSEFVAQLATFSGV 63

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQS+Q N+ L  LL  N L QA + IG+ +T   G ++G+V+++ + S   + +  D   
Sbjct: 64  EQSIQTNTKLDALLAGNVLGQAGTMIGRTVTA--GDVTGLVDSVAIESGSASLVLDDGRR 121

Query: 121 IPITTGIRIS 130
           + ++    +S
Sbjct: 122 VALSAVSGVS 131


>gi|257457612|ref|ZP_05622779.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
 gi|257444998|gb|EEV20074.1| flagellar hook capping protein [Treponema vincentii ATCC 35580]
          Length = 159

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ME++T     Q      K K+ LG+D FL+LL+ Q+ HQDPT PM+ ++ VAQ+A F+ +
Sbjct: 29  MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPMEDTQFVAQMAQFTSL 86

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDN 118
           EQ   MN +   L +    + A + +GK +      G++SG + A          + V+ 
Sbjct: 87  EQLTNMNQSFGTLNRLIGDSSAVNVVGKQVDIEQSGGTVSGTITAATRGEN--PQVQVNG 144

Query: 119 TEIPITTGIRIS 130
                +    + 
Sbjct: 145 KWYAWSDVQTVY 156


>gi|311068149|ref|YP_003973072.1| flagellar basal body rod modification protein [Bacillus atrophaeus
           1942]
 gi|310868666|gb|ADP32141.1| flagellar basal body rod modification protein [Bacillus atrophaeus
           1942]
          Length = 142

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 5/113 (4%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN-LAQ 81
           LG+D FLK+L+ Q+++QDP  P+   E ++Q+A FS +EQ + +N+T+ + +   +    
Sbjct: 26  LGKDEFLKILMKQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLNTTMTKFVDYQDPFTT 85

Query: 82  ASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
             ++IGK+++ ++G      +G V++++ S      +  D  EI       + 
Sbjct: 86  YVNWIGKDVSWSEGQDGKEQTGKVSSVKHSKGEYFLVLEDGKEISPWNVTSVG 138


>gi|269792938|ref|YP_003317842.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100573|gb|ACZ19560.1| flagellar hook capping protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 134

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 2   EINTEVNPTQQEFSKSKS-KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           E+N            +++ KK LG+D FLK+LI Q+ HQDP +P+K  + +AQ+A FS +
Sbjct: 3   EVNGVTQAASGGQEATRAVKKELGKDDFLKILIAQLTHQDPLDPLKDRDFIAQMAQFSAL 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117
           EQ + +   ++ L    ++A A +Y+G+ +   D      +GVV  +++    +T    D
Sbjct: 63  EQQMNIAKGIEGL-SKLSMASAVNYVGRTVGYTDDQGQEAAGVVKFVEMKDGSVTLHLAD 121

Query: 118 NTEIPITTGIRIS 130
              IP+     + 
Sbjct: 122 GNSIPMEKVQYVG 134


>gi|52080230|ref|YP_079021.1| flagellar basal body rod modification protein [Bacillus
           licheniformis ATCC 14580]
 gi|52785607|ref|YP_091436.1| flagellar basal body rod modification protein [Bacillus
           licheniformis ATCC 14580]
 gi|319645991|ref|ZP_08000221.1| YlxG protein [Bacillus sp. BT1B_CT2]
 gi|52003441|gb|AAU23383.1| Flagellar hook capping protein [Bacillus licheniformis ATCC 14580]
 gi|52348109|gb|AAU40743.1| YlxG [Bacillus licheniformis ATCC 14580]
 gi|317391741|gb|EFV72538.1| YlxG protein [Bacillus sp. BT1B_CT2]
          Length = 155

 Score = 99.7 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              ++  K+ S   LG+D FLKLL+ Q+++QDP  PM+  E +AQ+A FS +EQ   +N+
Sbjct: 26  SEAKKAEKAGSGSNLGKDEFLKLLMKQLQYQDPLNPMEDREFIAQMATFSSLEQLTNLNT 85

Query: 69  TLQELLKSNN-LAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           T+   +   + +    S+IGK +T         + +V +++ S      +  D TE+   
Sbjct: 86  TMSTFVGLQDPMTMYVSWIGKEVTYEGEDSEEKTALVKSVKSSDGQYLLVLDDGTEVNPW 145

Query: 125 TGIRIS 130
               +S
Sbjct: 146 NVTAVS 151


>gi|307718605|ref|YP_003874137.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
 gi|306532330|gb|ADN01864.1| flagellar hook assembly protein [Spirochaeta thermophila DSM 6192]
          Length = 145

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 4/112 (3%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K+ LG+D FLKLL+ Q+ HQDPT+P++  E +AQ+A FS +EQ   M+    +L      
Sbjct: 33  KQELGKDDFLKLLVAQLTHQDPTQPLEDKEFIAQMAQFSTLEQMTNMSQEFSKLALRLQS 92

Query: 80  AQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           +QA S +GK +   +G   ISGVV  ++ +      + V+     +     +
Sbjct: 93  SQAFSLLGKTVVIKNGGQEISGVVEEVRGTE--FPQLLVNGRYFDMNQIESV 142


>gi|203287744|ref|YP_002222759.1| flagellar hook assembly protein [Borrelia recurrentis A1]
 gi|201084964|gb|ACH94538.1| flagellar hook assembly protein [Borrelia recurrentis A1]
          Length = 146

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
            +  LG+D FLKLL+TQ+K+QDPTEPMK  E ++Q+A FS +EQ   MN + + L     
Sbjct: 31  KESNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMNKSFENLSSILG 90

Query: 79  LAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           + +  + +GK +         I G V +++        I +D      +  + + 
Sbjct: 91  VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYSNVLSVG 143


>gi|157692307|ref|YP_001486769.1| flagellar basal body rod modification protein [Bacillus pumilus
           SAFR-032]
 gi|157681065|gb|ABV62209.1| flagellar basal body rod modification protein [Bacillus pumilus
           SAFR-032]
          Length = 148

 Score = 99.3 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V  T       K   TLG+D FLK+L+TQ+++QDPT P+   E V QLA FS +EQ 
Sbjct: 8   NRTVTQTDTSSKAEKKTDTLGKDQFLKILLTQLQNQDPTNPLDDREFVTQLATFSSLEQQ 67

Query: 64  VQMNSTLQELLKSNNL--------AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTA 113
             MN ++ +L +  +              +IGK ++    D  ISG V +++  +     
Sbjct: 68  TNMNDSITKLNQLMSTFVAHQDPFTTYVGWIGKEVSGKLDDKDISGTVKSVKNINNEYFL 127

Query: 114 ITVDNTEIPITTGIRISN 131
              D  +I       +  
Sbjct: 128 YLEDGMKISPWDVTAVGE 145


>gi|239826620|ref|YP_002949244.1| flagellar basal body rod modification protein [Geobacillus sp.
           WCH70]
 gi|239806913|gb|ACS23978.1| flagellar hook capping protein [Geobacillus sp. WCH70]
          Length = 140

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++ +    +   +    + LG+D FLK+L+ Q+++QDP  PM+  E +AQ+A FS +EQ 
Sbjct: 7   SSLLLDNYKPPERKTGNQILGKDDFLKILLVQLQNQDPLNPMEDKEFIAQMASFSSLEQM 66

Query: 64  VQMNSTLQELLKSN---NLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDN 118
           + ++S +++ +K+     L + S +IGKN+     + + SG+V ++      +     + 
Sbjct: 67  INISSMIEQFIKTQHDHALLRYSEWIGKNVYWQEDENTKSGIVQSVSQKDQQIFLELDNG 126

Query: 119 TEIPITTGIRI 129
           T I  +  +++
Sbjct: 127 TTIKASLVVKV 137


>gi|167037662|ref|YP_001665240.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167040323|ref|YP_001663308.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
 gi|300914407|ref|ZP_07131723.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
 gi|307724357|ref|YP_003904108.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
 gi|320116077|ref|YP_004186236.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166854563|gb|ABY92972.1| flagellar hook capping protein [Thermoanaerobacter sp. X514]
 gi|166856496|gb|ABY94904.1| flagellar hook capping protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300889342|gb|EFK84488.1| flagellar hook capping protein [Thermoanaerobacter sp. X561]
 gi|307581418|gb|ADN54817.1| flagellar hook capping protein [Thermoanaerobacter sp. X513]
 gi|319929168|gb|ADV79853.1| flagellar hook capping protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 131

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 8/133 (6%)

Query: 1   MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M+INT  N T       S     LG+D FLKLL+TQ+K+QDP  PM   E +AQLA FS 
Sbjct: 1   MDINTNYNVTSIYNNRVSTLNSQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITV 116
           +EQ   MNS++  +   N + +    I   IT+ +G   ++ G V+ +     G   + V
Sbjct: 61  LEQMQNMNSSINAIRAINLIGKN---IYATITDNNGNSRTVIGKVDVV-YKQNGEYFLEV 116

Query: 117 DNTEIPITTGIRI 129
           +  +IP+     +
Sbjct: 117 NGIDIPLDAVTAV 129


>gi|320538207|ref|ZP_08038102.1| flagellar hook capping protein [Treponema phagedenis F0421]
 gi|2196891|gb|AAB61250.1| FlgD [Treponema phagedenis]
 gi|320145024|gb|EFW36745.1| flagellar hook capping protein [Treponema phagedenis F0421]
          Length = 163

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 4/132 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +E++      Q E    K K+ LG++ FL+LLI Q+ HQDPT PM+ ++ VAQ+A F+ +
Sbjct: 26  LELDVNAFNKQIEIDGRKPKQELGKNDFLQLLIAQLSHQDPTAPMEDTQFVAQMAQFTSL 85

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVVNAIQVSSTGLTAITVDN 118
           EQ   ++ + ++L    + ++A + +GK +   DGSI  SGV+ A   +   +  + VD 
Sbjct: 86  EQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVITA--ATRGEIPQVQVDG 143

Query: 119 TEIPITTGIRIS 130
                +T   + 
Sbjct: 144 KWYDWSTVKTVY 155


>gi|312621575|ref|YP_004023188.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202042|gb|ADQ45369.1| flagellar hook capping protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 164

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 13/132 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT ++ + Q  + S  K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ 
Sbjct: 9   NTNISNSTQGSATSLGKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118
             +N + + L          S IG+ +   +      +I G +++I+V       + V+ 
Sbjct: 69  QNLNESFEFLKAQ-------SMIGRYVVATNPADTSKTIEGRIDSIRV-DGSKVYLKVNG 120

Query: 119 TEIPITTGIRIS 130
           TE+       + 
Sbjct: 121 TEVLSDNVKEVY 132


>gi|216263922|ref|ZP_03435916.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
 gi|215979966|gb|EEC20788.1| flagellar hook capping protein [Borrelia afzelii ACA-1]
          Length = 147

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
            +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ   M+ + ++L  S 
Sbjct: 31  SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            + +    +GK I    G+   + G V +I+  +  +  I V+         + + 
Sbjct: 91  EIRKDLDLLGKVIKFQHGNGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144


>gi|190890387|ref|YP_001976929.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
 gi|190695666|gb|ACE89751.1| flagellar basal-body rod protein [Rhizobium etli CIAT 652]
 gi|327193064|gb|EGE59976.1| flagellar basal-body rod protein [Rhizobium etli CNPAF512]
          Length = 141

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/112 (52%), Positives = 85/112 (75%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K TL  D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L  LL S++L
Sbjct: 23  KATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSL 82

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            QASSY+GK + +ADG++ GV+++++V S G+ A T D  +I +  GI +++
Sbjct: 83  TQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 134


>gi|224534247|ref|ZP_03674825.1| flagellar hook capping protein [Borrelia spielmanii A14S]
 gi|224514349|gb|EEF84665.1| flagellar hook capping protein [Borrelia spielmanii A14S]
          Length = 147

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 5/119 (4%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           +   +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ   M+ + ++L 
Sbjct: 28  NNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLS 87

Query: 75  KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            S  + +    +GK I    G    + G V +I+  +  +  + V+         + + 
Sbjct: 88  SSLEIRKDLDLLGKVIKFQHGDGEIVKGRVTSIK--TGAMPQVMVNGNYYVYKNILSVG 144


>gi|170744548|ref|YP_001773203.1| flagellar basal body rod modification protein [Methylobacterium sp.
           4-46]
 gi|168198822|gb|ACA20769.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
          Length = 142

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/117 (42%), Positives = 81/117 (69%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            + SK+  +L  DAFL+LL+TQ+K+QDPT+PM ++  + +LA FS++EQS +MN+ L  L
Sbjct: 26  PTTSKTATSLNTDAFLQLLLTQLKNQDPTKPMDSTAYMGELATFSEVEQSTKMNNKLDAL 85

Query: 74  LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           L SN L+QA S IG+  T+ DG I+GVV ++++++ G  A   D  ++ +  G+ +S
Sbjct: 86  LSSNYLSQAESAIGRTATSDDGKITGVVASVKITTDGPLATLKDGRQLLLGNGVSLS 142


>gi|183220586|ref|YP_001838582.1| basal-body rod modification protein FlgD [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910694|ref|YP_001962249.1| endoflagellar hook capping protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775370|gb|ABZ93671.1| Endoflagellar hook capping protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779008|gb|ABZ97306.1| Basal-body rod modification protein FlgD [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 194

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
            + +K LG+D FLKLL+TQ+ HQDPT P++  + +AQ+A FS +EQ   ++S +  +   
Sbjct: 48  REKQKELGKDDFLKLLLTQLSHQDPTNPVQDKDFIAQMAQFSSLEQMKNISSGIARM--- 104

Query: 77  NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
               Q+ S +GK ++  D      ++G+  AI   + G T + V+   + ++    IS+
Sbjct: 105 -ESKQSYSVVGKIVSGPDLVTGEDVTGLAGAILFDNEGKTYVRVNGRMLDVSKINLISD 162


>gi|111115109|ref|YP_709727.1| flagellar basal body rod modification protein [Borrelia afzelii
           PKo]
 gi|110890383|gb|ABH01551.1| flagellar hook assembly protein [Borrelia afzelii PKo]
          Length = 147

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
            +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ   M+ + ++L  S 
Sbjct: 31  SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSKSFEKLSSSL 90

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            + +    +GK I    G    + G V +I+  +  +  I V+         + + 
Sbjct: 91  EIRKDLDLLGKVIKFQHGDGEIVEGRVTSIK--TGAIPQIMVNGNYYVYKNILSVG 144


>gi|218506521|ref|ZP_03504399.1| flagellar basal body rod modification protein [Rhizobium etli
           Brasil 5]
          Length = 118

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/111 (52%), Positives = 84/111 (75%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
            TL  D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L  LL S++L 
Sbjct: 1   ATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLASSSLT 60

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           QASSY+GK + +ADG++ GV+++++V S G+ A T D  +I +  GI +++
Sbjct: 61  QASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGGKILVQAGITVAD 111


>gi|86356335|ref|YP_468227.1| flagellar basal body rod modification protein [Rhizobium etli CFN
           42]
 gi|86280437|gb|ABC89500.1| flagellar basal-body rod protein [Rhizobium etli CFN 42]
          Length = 142

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 88/115 (76%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           ++SK TL  D FL+LLI Q+K+QDPT+PM ASEQVAQLA FSQ+EQ++Q N+ L  LL S
Sbjct: 21  AQSKATLNYDNFLQLLIAQMKNQDPTDPMDASEQVAQLATFSQVEQTIQTNTKLDTLLAS 80

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           ++L QASSY+GK + +ADG++ GV+++++V S G+ A T D  +I +  GI +++
Sbjct: 81  SSLTQASSYVGKYMESADGTVKGVIDSVKVYSDGIIATTTDGDKILVQAGITVAD 135


>gi|300024583|ref|YP_003757194.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526404|gb|ADJ24873.1| flagellar hook capping protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 136

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 80/123 (65%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                +  + +      TL  + FLKL++ Q+++QDP  P  +++ ++Q+A FS +EQ +
Sbjct: 9   NTSGTSNADANDKTKNSTLNYNDFLKLMVAQLRNQDPLNPTDSTQYMSQIAQFSSVEQGI 68

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
             N+ L +LL ++N++QAS+ IG ++T+ADGS+SG+V ++++ STG TAI  +  E+ I 
Sbjct: 69  NTNAKLDQLLVNSNISQASTMIGLSLTSADGSVSGIVTSVRIDSTGSTAILNNGKEVRID 128

Query: 125 TGI 127
            G+
Sbjct: 129 QGV 131


>gi|242280468|ref|YP_002992597.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
 gi|242123362|gb|ACS81058.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
          Length = 242

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            I           ++ K K  LGQD FLKLL+TQ+++QDP  PM+  E +AQ+A FS +E
Sbjct: 8   NILGRAEADMAASNQPKHKNQLGQDDFLKLLLTQMQNQDPANPMEDKEYMAQMAQFSSLE 67

Query: 62  QSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTA 113
           Q  Q+NS ++ ++ +N    +  A  +IGK +     SIS   G ++ +        A
Sbjct: 68  QLTQVNSNIKTMIDNNAQDQMVSAVGFIGKEVKAEGYSISRDNGKISKVFYGLGEPVA 125


>gi|118589961|ref|ZP_01547365.1| flagellar basal-body rod modification protein D [Stappia aggregata
           IAM 12614]
 gi|118437458|gb|EAV44095.1| flagellar basal-body rod modification protein D [Stappia aggregata
           IAM 12614]
          Length = 131

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                    + ++ + T+  D FL L++ Q+++QDPT PM ASEQ+AQLA FSQ+EQS+Q
Sbjct: 8   SATEGAASPATAQKQLTVDYDTFLHLMMAQMQNQDPTNPMDASEQLAQLASFSQVEQSIQ 67

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
            N+ L+ LL + +  Q    IG+ +T+A+G+ +GVV  ++V S G      +   I +  
Sbjct: 68  TNAKLETLLTNLSFGQVDDLIGRTVTDANGT-TGVVEKVEVYSDGTVLALDNGKGILLGP 126

Query: 126 GIRIS 130
           G+ IS
Sbjct: 127 GVTIS 131


>gi|116328902|ref|YP_798622.1| endoflagellar hook capping protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330491|ref|YP_800209.1| endoflagellar hook capping protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121646|gb|ABJ79689.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124180|gb|ABJ75451.1| Endoflagellar hook capping protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 271

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             + K+LG+D FLKLLITQ+  QDPT P+K  + +AQ+A FS +EQ   +++ +Q++   
Sbjct: 46  RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISTGIQKM--- 102

Query: 77  NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
               Q+ S +GK ++  D     +++G+  A+     G T + V+   I +     IS+
Sbjct: 103 -GNRQSFSLVGKLVSGPDFVTGENVAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160


>gi|216264944|ref|ZP_03436936.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
 gi|224533148|ref|ZP_03673748.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
 gi|215981417|gb|EEC22224.1| flagellar hook capping protein [Borrelia burgdorferi 156a]
 gi|224511875|gb|EEF82276.1| flagellar hook capping protein [Borrelia burgdorferi WI91-23]
 gi|312148217|gb|ADQ30876.1| flagellar hook capping protein [Borrelia burgdorferi JD1]
 gi|312149592|gb|ADQ29663.1| flagellar hook capping protein [Borrelia burgdorferi N40]
          Length = 147

 Score = 97.8 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N     T        +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ 
Sbjct: 17  NKVKKKTDFNVENISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120
             M+ + ++L  S  + +    +GK I    G    + G V  I+  +  +  + V+   
Sbjct: 77  ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134

Query: 121 IPITTGIRIS 130
                 + + 
Sbjct: 135 YVYKNILSVG 144


>gi|326389476|ref|ZP_08211043.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994481|gb|EGD52906.1| flagellar hook capping protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 131

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%)

Query: 1   MEINTEVNPTQQEFSK-SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M+INT  N T    ++ + SK  LG+D FLKLL+TQ+K+QDP  PM   E +AQLA FS 
Sbjct: 1   MDINTNYNITTVYTNRVTTSKDQLGKDDFLKLLVTQLKNQDPLNPMDDREFIAQLAQFST 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
           +EQ   MNS+   +   N + +       +      +++G V+ +     G   + V+  
Sbjct: 61  LEQMQNMNSSFNAVRAINLIGKNIYATITDNNGNSQTVTGKVDVV-YKQNGEYFLQVNGI 119

Query: 120 EIPITTGIRISN 131
           ++P+     +S 
Sbjct: 120 DVPVDAVTAVSE 131


>gi|56419761|ref|YP_147079.1| flagellar basal body rod modification protein [Geobacillus
           kaustophilus HTA426]
 gi|297530599|ref|YP_003671874.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
 gi|56379603|dbj|BAD75511.1| flagellar hook capping protein [Geobacillus kaustophilus HTA426]
 gi|297253851|gb|ADI27297.1| flagellar hook capping protein [Geobacillus sp. C56-T3]
          Length = 142

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
               +  +    + LG+D FLK+L+ Q+++QDP  PM+  + +AQ+A FS +EQ + + +
Sbjct: 13  ANAVQPERKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMASFSSLEQMMNIAN 72

Query: 69  TLQELLKSNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPI 123
            +Q+ +++++   L + S +IGK +   DG   +S VV ++      +T    + T I  
Sbjct: 73  LMQQWMQASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAA 132

Query: 124 TTGIRI 129
              +++
Sbjct: 133 DAVVKV 138


>gi|203284205|ref|YP_002221945.1| flagellar hook assembly protein [Borrelia duttonii Ly]
 gi|201083648|gb|ACH93239.1| flagellar hook assembly protein [Borrelia duttonii Ly]
          Length = 146

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
               LG+D FLKLL+TQ+K+QDPTEPMK  E ++Q+A FS +EQ   M+ + + L     
Sbjct: 31  KGSNLGRDDFLKLLLTQLKYQDPTEPMKDKEFISQMAQFSALEQMTNMSKSFENLSSILG 90

Query: 79  LAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           + +  + +GK +         I G V +++        I +D         + + 
Sbjct: 91  VNKDLNLLGKIVEFENVEGKIIKGKVTSVKAGVN--PQIMIDGKYYVYNNVLSVG 143


>gi|15615014|ref|NP_243317.1| flagellar basal body rod modification protein [Bacillus halodurans
           C-125]
 gi|10175071|dbj|BAB06170.1| flagellar hook assembly protein [Bacillus halodurans C-125]
          Length = 171

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 15/135 (11%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           +    +  +   LG+D FL++LI Q+++QDP  PM   E +AQ+A FS +EQ   MNS +
Sbjct: 14  ENRPKEQSNSGILGKDDFLRILIAQLQYQDPLNPMDDREFIAQMAQFSSLEQMTNMNSAI 73

Query: 71  QELL---KSNNLAQASSYIGKNITN-----------ADGSISGVVNAIQVSSTGLTAITV 116
           Q+ +    S  L Q S  IGK +T             +  +   V ++++ + G  +I +
Sbjct: 74  QQFVKQQTSQTLVQHSELIGKRVTWKRIIDIDEYRQKEELVENTVTSVRLETNGNVSIQL 133

Query: 117 D-NTEIPITTGIRIS 130
           D    I     +++S
Sbjct: 134 DSGRWISADQLVQVS 148


>gi|222084890|ref|YP_002543419.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
 gi|221722338|gb|ACM25494.1| flagellar basal-body rod protein [Agrobacterium radiobacter K84]
          Length = 158

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 75/108 (69%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           L  + FLKLLI Q+K QDPT+PM A++Q++QLA FSQ+EQ +Q NS L+ +L++  ++QA
Sbjct: 28  LNYNDFLKLLIAQMKTQDPTDPMDATQQISQLASFSQVEQQIQTNSHLETVLQNQWISQA 87

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           S YIGK I +ADG+ +G +  + V S G+ A T    +I +  G+ ++
Sbjct: 88  SDYIGKEIMSADGTTTGTIKEVTVYSDGIIAQTEAGDKILLQAGVTVA 135


>gi|90418360|ref|ZP_01226272.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338032|gb|EAS51683.1| flagellar hook capping protein FlgD [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 134

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 72/126 (57%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T     Q   S +  K  +  DAFLKLL+ ++ +QDP  P  ++E VAQ A FS +EQ++
Sbjct: 9   TSATAAQTGISAATQKTGMDYDAFLKLLVAEMSNQDPLNPTDSTEYVAQFASFSSVEQAI 68

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           Q N  L  ++  + L QA+S IG+  T+ADG++SG V A++  +  + AI      +P+ 
Sbjct: 69  QTNKKLDSMMTVSALTQANSLIGQTATSADGTLSGKVAAVRAVNGVVEAILESGDSLPLI 128

Query: 125 TGIRIS 130
           +G  + 
Sbjct: 129 SGTTVG 134


>gi|15594629|ref|NP_212418.1| flagellar basal body rod modification protein [Borrelia burgdorferi
           B31]
 gi|195941362|ref|ZP_03086744.1| flagellar basal body rod modification protein [Borrelia burgdorferi
           80a]
 gi|218249522|ref|YP_002374807.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
 gi|221217794|ref|ZP_03589262.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
 gi|223888939|ref|ZP_03623530.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
 gi|224533832|ref|ZP_03674420.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
 gi|225549019|ref|ZP_03769994.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
 gi|225550075|ref|ZP_03771035.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
 gi|226320585|ref|ZP_03796145.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
 gi|226321602|ref|ZP_03797128.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
 gi|1165268|gb|AAA85607.1| YlxG [Borrelia burgdorferi]
 gi|1196325|gb|AAB51417.1| flagellar hook assembly protein [Borrelia burgdorferi]
 gi|2688182|gb|AAC66664.1| flagellar hook assembly protein (flgD) [Borrelia burgdorferi B31]
 gi|218164710|gb|ACK74771.1| flagellar hook capping protein [Borrelia burgdorferi ZS7]
 gi|221192471|gb|EEE18690.1| flagellar hook capping protein [Borrelia burgdorferi 72a]
 gi|223885755|gb|EEF56854.1| flagellar hook capping protein [Borrelia burgdorferi 64b]
 gi|224513125|gb|EEF83488.1| flagellar hook capping protein [Borrelia burgdorferi CA-11.2a]
 gi|225369187|gb|EEG98640.1| flagellar hook capping protein [Borrelia burgdorferi 118a]
 gi|225370245|gb|EEG99683.1| flagellar hook capping protein [Borrelia burgdorferi 94a]
 gi|226232791|gb|EEH31544.1| flagellar hook capping protein [Borrelia burgdorferi Bol26]
 gi|226234004|gb|EEH32725.1| flagellar hook capping protein [Borrelia burgdorferi 29805]
          Length = 147

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N     T        +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ 
Sbjct: 17  NKVKKKTDFNVDNISNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQM 76

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTE 120
             M+ + ++L  S  + +    +GK I    G    + G V  I+  +  +  + V+   
Sbjct: 77  ANMSRSFEKLSSSLEIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNY 134

Query: 121 IPITTGIRIS 130
                 + + 
Sbjct: 135 YVYKNILSVG 144


>gi|146278629|ref|YP_001168788.1| flagellar basal body rod modification protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145556870|gb|ABP71483.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC
          17025]
          Length = 218

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          ME+++  +PT      S    T   + FL++L TQ+++QDP  PM++ +   QLA FS +
Sbjct: 1  MEVSSATSPTAGSAPASGRSTTSDYETFLRMLTTQLQNQDPLNPMESDDFAMQLATFSGV 60

Query: 61 EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93
          EQ V+ N  L  +  S     L++ + +IG+     
Sbjct: 61 EQQVRTNQILTGMSGSFGAMGLSELAGWIGREARVE 96


>gi|261419426|ref|YP_003253108.1| flagellar basal body rod modification protein [Geobacillus sp.
           Y412MC61]
 gi|319766241|ref|YP_004131742.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
 gi|261375883|gb|ACX78626.1| flagellar hook capping protein [Geobacillus sp. Y412MC61]
 gi|317111107|gb|ADU93599.1| flagellar hook capping protein [Geobacillus sp. Y412MC52]
          Length = 142

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
               +  +    + LG+D FLK+L+ Q+++QDP  PM+  + +AQ+A FS +EQ + + +
Sbjct: 13  ANAVQPERKTGNQILGKDDFLKILLAQLENQDPLNPMEDKDFIAQMANFSSLEQMMNIAN 72

Query: 69  TLQELLKSNN---LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPI 123
            +Q+ +++++   L + S +IGK +   DG   +S VV ++      +T    + T I  
Sbjct: 73  LMQQWMQASSRDALLRYSEWIGKTVHWQDGETMMSAVVQSVMQKDGQVTLGLDNGTTIAA 132

Query: 124 TTGIRI 129
              +++
Sbjct: 133 DAVVKV 138


>gi|78356755|ref|YP_388204.1| basal-body rod modification protein FlgD [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219160|gb|ABB38509.1| basal-body rod modification protein FlgD [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 263

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             +    +    LG++ FL LL+TQ+ HQDP  PM   E VAQLA FS +EQ   ++  +
Sbjct: 16  TNDPYAKRKGADLGKEDFLTLLVTQLSHQDPLNPMDDKEFVAQLAQFSSLEQLTNISGGI 75

Query: 71  QELLKSNNLAQASS---YIGKNITNADGSIS---GVVNAIQVSSTGLTA 113
             L  ++N  Q  S   +IGK +  A  S+S   G  +++  +      
Sbjct: 76  DNLNDASNQGQMISAVGFIGKEVRAAGNSLSLEDGKASSVYFALNAPIV 124


>gi|114320056|ref|YP_741739.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226450|gb|ABI56249.1| flagellar hook capping protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 222

 Score = 97.0 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 13/127 (10%)

Query: 1   MEINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           M I+   +   ++ + ++ +    LGQD FLKL+ITQ+++QDP  PM++ E ++Q+A F+
Sbjct: 1   MNISGAGSGDYSRAQPTQREPAGELGQDDFLKLMITQLQNQDPMNPMESGEFMSQIASFT 60

Query: 59  QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVS 107
                 Q+  +  E    +++N   QA+S +G+ +           DG ++G+V      
Sbjct: 61  TASGMDQLQKSFSEFQQDMRANQALQAASLVGREVLVETDAGRLPADGEMTGIVQLPSAV 120

Query: 108 STGLTAI 114
           +     I
Sbjct: 121 ANANIHI 127


>gi|149182510|ref|ZP_01860983.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1]
 gi|148849770|gb|EDL63947.1| flagellar basal body rod modification protein D [Bacillus sp. SG-1]
          Length = 211

 Score = 97.0 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 14/141 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +  +  + Q+  +   K  LG+D F+K+L+TQ+++QDP  PM+  + +AQ+A FS +EQ 
Sbjct: 7   SNLLLSSLQQKQREGGKDVLGKDDFMKILMTQLQNQDPLNPMQDKDFIAQMATFSTLEQI 66

Query: 64  VQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS-----------GVVNAIQVSST 109
             ++ +++  ++    NNL   + ++GK IT      S           G+V++++    
Sbjct: 67  TNLSKSMETFIEAQGQNNLIAYNQFVGKEITWHKLEESSEGRTEIKEGKGIVSSVRFQDN 126

Query: 110 GLTAITVDNTEIPITTGIRIS 130
            +  I  + T +      +++
Sbjct: 127 EVQFIMENGTILAPGNVSQVN 147


>gi|225552001|ref|ZP_03772941.1| flagellar hook capping protein [Borrelia sp. SV1]
 gi|225370999|gb|EEH00429.1| flagellar hook capping protein [Borrelia sp. SV1]
          Length = 147

 Score = 97.0 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
            +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ   M+ + ++L  S 
Sbjct: 31  SNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSALEQMANMSRSFEKLSSSL 90

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            + +    +GK I    G    + G V  I+  +  +  + V+         + + 
Sbjct: 91  EIRKDLDLLGKVIKFQHGDGEIVEGRVTNIK--TGAIPQVMVNGNYYVYKNILSVG 144


>gi|296133042|ref|YP_003640289.1| flagellar hook capping protein [Thermincola sp. JR]
 gi|296031620|gb|ADG82388.1| flagellar hook capping protein [Thermincola potens JR]
          Length = 146

 Score = 97.0 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            ++   +   QE      K  LG+D FLKLL+TQ+K+QDP EP    + +AQ+A FS +E
Sbjct: 6   NVSDAGSTQSQEAVSRTVKNVLGKDDFLKLLLTQLKYQDPLEPTDNKDFIAQMAQFSALE 65

Query: 62  QSVQMNSTLQELLKSNN-------LAQASSYIGKNITN----ADGSISGVVNAIQVSSTG 110
           Q   M+    +L++          ++QA   IGK +       +  ++G V A+++   G
Sbjct: 66  QMTNMSDGFTKLVQMQETLFRESTVSQAVGLIGKKVEATLPDQNEPLTGFVTAMKIV-DG 124

Query: 111 LTAITVDNTEIPITTGIRI 129
              + V+  EI +     +
Sbjct: 125 EPRVVVNGKEIGLGYISMV 143


>gi|224531754|ref|ZP_03672386.1| flagellar hook capping protein [Borrelia valaisiana VS116]
 gi|224511219|gb|EEF81625.1| flagellar hook capping protein [Borrelia valaisiana VS116]
          Length = 147

 Score = 97.0 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
            +K  LG+D FLKLLITQ+++QDPT PMK  E +AQ+A FS +EQ   M+ + ++L  S 
Sbjct: 31  ANKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFIAQMAQFSSLEQMANMSKSFEKLSSSL 90

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            + +    +GK I    G    + G V  I+  +  +  I V+         + + 
Sbjct: 91  EIRKDLDLLGKVIKFQHGDGEIVKGRVTNIK--TGAIPQIMVNGNYYVYKNILSVG 144


>gi|229826309|ref|ZP_04452378.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
           49176]
 gi|229789179|gb|EEP25293.1| hypothetical protein GCWU000182_01681 [Abiotrophia defectiva ATCC
           49176]
          Length = 317

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
           Q    +     LG+D+FLKLL  Q+++QDP +P   +E V+QLA +S +EQ   +N+T+ 
Sbjct: 33  QNVKTADDLNKLGKDSFLKLLCAQMENQDPMQPQSNTEWVSQLATYSSLEQMQNLNATIA 92

Query: 72  ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
                  + Q      K+    + ++SG V+ + V     + +++D    P +    + N
Sbjct: 93  NSQAYGLIGQEVVMAAKDSDGHETTVSGKVDFVSVKGN-KSYLSIDGNLYPASDLQSVIN 151


>gi|289523566|ref|ZP_06440420.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503258|gb|EFD24422.1| flagellar hook capping protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 142

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 7/136 (5%)

Query: 1   MEIN--TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           M +N  + VN +     K + K  LG+D FLKLLITQ+ HQDP EP+  +E +AQ+A FS
Sbjct: 1   MAVNQVSSVNQSYYNEGKREIKNELGKDDFLKLLITQLTHQDPLEPVSDTEFIAQMAQFS 60

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTAI 114
            +EQ   +   ++ LL    L    SYIGK +   D +        V +       +   
Sbjct: 61  TLEQMTNVAKGVESLLSVTKLNAQ-SYIGKEVIYYDDNTGLYQQSSVRSAIFEDGEVYLE 119

Query: 115 TVDNTEIPITTGIRIS 130
             +   I +     ++
Sbjct: 120 LENGKYILLDEIKAVT 135


>gi|261407977|ref|YP_003244218.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
 gi|261284440|gb|ACX66411.1| flagellar hook capping protein [Paenibacillus sp. Y412MC10]
          Length = 186

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 11/131 (8%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 +K+ + + LG+D FL +LITQ++HQDP +PM+  E +AQ+A F+ +EQ + +N+
Sbjct: 16  AKGNISTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75

Query: 69  TLQELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTE 120
            L  +  S +L  ASS IGK I+      DGS     SG+V++I +   G+    V   E
Sbjct: 76  QLTAM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSI-IVRDGVHYAKVGENE 132

Query: 121 IPITTGIRISN 131
           + +   ++I N
Sbjct: 133 VSLDQIVKIEN 143


>gi|45657071|ref|YP_001157.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45600308|gb|AAS69794.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 264

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             + K+LG+D FLKLLITQ+  QDPT P+K  + +AQ+A FS +EQ   +++ +Q++   
Sbjct: 46  RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM--- 102

Query: 77  NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
               Q+ S +GK ++  D     +I+G+  A+     G T + V+   I +     IS+
Sbjct: 103 -GNRQSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160


>gi|138894747|ref|YP_001125200.1| flagellar basal body rod modification protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247631|ref|ZP_03146333.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
 gi|134266260|gb|ABO66455.1| Flagellar hook assembly protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212415|gb|EDY07172.1| flagellar hook capping protein [Geobacillus sp. G11MC16]
          Length = 142

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
               +  +    + LG+D FLK+L+ Q+++QDP  PM+  E +AQ+A FS +EQ + + +
Sbjct: 13  ANAVQPERKTGDQILGKDDFLKILLAQLQNQDPLNPMEDREFIAQMASFSSLEQMMNIAN 72

Query: 69  TLQELLKSN---NLAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
            +Q+ ++++    L + S +IGK +     D ++S VV ++      +     + T I  
Sbjct: 73  LMQQWMQASGRDALLRYSEWIGKTVHWQEDDSTMSAVVQSVMQKDGKIVLELNNGTTIAA 132

Query: 124 TTGIRI 129
               ++
Sbjct: 133 DVVTKV 138


>gi|295110894|emb|CBL27644.1| Flagellar hook capping protein [Synergistetes bacterium SGP1]
          Length = 145

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 15/144 (10%)

Query: 1   MEINTEVNPTQQEFSKSKS---KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
           M +N        + S +     +  L ++AFLKLLI ++ +QDP  PM+  E +AQ+A F
Sbjct: 1   MPVNGVAGAVNTDPSAATGAVRQNELDKNAFLKLLIAELSNQDPLNPMEDREFIAQMAQF 60

Query: 58  SQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----------ISGVVNAIQV 106
           S +EQ   MN TL+ + +++    A SYIGK I+    +            + +V A+  
Sbjct: 61  SSLEQMQNMNKTLESMAQASKFD-AVSYIGKAISFNKITKDEKGKEVETPTAALVRAVFF 119

Query: 107 SSTGLTAITVDNTEIPITTGIRIS 130
                  +     ++ +   + ++
Sbjct: 120 DPQKGPILDTAEGQVELAKVLGVA 143


>gi|225181605|ref|ZP_03735046.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167713|gb|EEG76523.1| flagellar hook capping protein [Dethiobacter alkaliphilus AHT 1]
          Length = 141

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                TQQ    + + + + +D FL+LL+TQ+++QDP +P   SE VAQ+A F+ +EQ  
Sbjct: 8   GTTAATQQSNKATGAMQEMDKDMFLQLLVTQLRYQDPLDPQDNSEFVAQMAQFTSLEQMQ 67

Query: 65  QMNSTLQELLKSNNLA--QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNT 119
            +N+T+ +LL   +     A +++G ++T  D +   ++G+V+A++    G   + +D  
Sbjct: 68  NLNNTMAKLLDIQSSLHNSAPAFLGLSVTVKDDNGLPLTGIVSAVEY-DNGKPRLVIDGN 126

Query: 120 EIPITTGIRIS 130
              + +  +++
Sbjct: 127 RYGLESVQKVT 137


>gi|269976273|ref|ZP_06183269.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
 gi|269935602|gb|EEZ92140.1| putative flagellar hook capping protein [Mobiluncus mulieris 28-1]
          Length = 374

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +  +K +    LG+D F+KLL+  +K+QDPT+PM  ++ + Q +  + MEQ +QM   
Sbjct: 101 TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 160

Query: 70  LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
            +   ++    Q +S +G+      I +     + +G V+A++  + G     + + ++ 
Sbjct: 161 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 220

Query: 123 ITTGIRISN 131
           +   + I++
Sbjct: 221 MEDILGIAD 229


>gi|219685744|ref|ZP_03540555.1| flagellar hook capping protein [Borrelia garinii Far04]
 gi|219672683|gb|EED29711.1| flagellar hook capping protein [Borrelia garinii Far04]
          Length = 147

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 2   EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
            ++   N ++ +           +K  LG+D FLKLLITQ+++QDPT PMK  E ++Q+A
Sbjct: 9   NVSNLTNSSKIKKESEFKVDNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68

Query: 56  VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            FS +EQ   M+ + ++L  S  + +    +GK I         + G V  I+  +  + 
Sbjct: 69  QFSALEQMTNMSKSFEKLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIP 126

Query: 113 AITVDNTEIPITTGIRIS 130
            + V+         + + 
Sbjct: 127 QVMVNGNYYVYKNILSVG 144


>gi|116250505|ref|YP_766343.1| flagellar basal body rod modification protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255153|emb|CAK06227.1| putative hook formation protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 142

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/115 (49%), Positives = 85/115 (73%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           ++SK TL  D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L  LL S
Sbjct: 21  AQSKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLAS 80

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           ++L QASSY+GK + +ADG++ G + +++V S G+ A T D   I +  GI I++
Sbjct: 81  SSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITIAD 135


>gi|24215549|ref|NP_713030.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24196694|gb|AAN50048.1| flagellar hook assembly scaffolding protein [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 264

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 8/119 (6%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             + K+LG+D FLKLLITQ+  QDPT P+K  + +AQ+A FS +EQ   +++ +Q++   
Sbjct: 46  RSTVKSLGKDDFLKLLITQLSSQDPTNPVKDQDFIAQMAQFSSLEQMNNISNGIQKM--- 102

Query: 77  NNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
               Q+ S +GK ++  D     +I+G+  A+     G T + V+   I +     IS+
Sbjct: 103 -GNRQSFSLVGKLVSGPDFVNGENIAGIAGALFFDGEGKTFVRVNGRSIDVEQISLISD 160


>gi|51598544|ref|YP_072732.1| flagellar basal body rod modification protein [Borrelia garinii
           PBi]
 gi|51573115|gb|AAU07140.1| flagellar hook assembly protein [Borrelia garinii PBi]
          Length = 147

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 2   EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
            ++   N ++ +           SK  LG+D FLKLLITQ+++QDPT PMK  E ++Q+A
Sbjct: 9   NVSNLTNSSKIKKESDFKIDNVSSKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68

Query: 56  VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            FS +EQ   M+ + ++L  S  + +    +GK I         + G V  I+  +  + 
Sbjct: 69  QFSALEQMTNMSKSFEKLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGTIP 126

Query: 113 AITVDNTEIPITTGIRIS 130
            + V+         + + 
Sbjct: 127 QVMVNGNYYVYKNILSVG 144


>gi|219684639|ref|ZP_03539582.1| flagellar hook capping protein [Borrelia garinii PBr]
 gi|219672001|gb|EED29055.1| flagellar hook capping protein [Borrelia garinii PBr]
          Length = 147

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%)

Query: 2   EINTEVNPTQQEFSKS------KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
            ++   N ++ +           +K  LG+D FLKLLITQ+++QDPT PMK  E ++Q+A
Sbjct: 9   NVSNLTNSSKIKKESDFKVDNVSNKVNLGKDDFLKLLITQLRYQDPTNPMKDKEFISQMA 68

Query: 56  VFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            FS +EQ   M+ + + L  S  + +    +GK I         + G V  I+  +  + 
Sbjct: 69  QFSALEQMTNMSKSFERLSSSLGIRRDLDLLGKVIKFQHGDGEVVKGRVTNIK--TGAIP 126

Query: 113 AITVDNTEIPITTGIRIS 130
            + V+         + + 
Sbjct: 127 QVMVNGNYYVYKNILSVG 144


>gi|254473493|ref|ZP_05086890.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
 gi|211957609|gb|EEA92812.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
          Length = 152

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 4/131 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N   +       +   +  L  +AFL L +  +K QDPT+P+  +E + QLA FS +EQS
Sbjct: 10  NGASSNEPVFKPQGSEQAYLDYNAFLMLFMESLKSQDPTDPLDTAEYMGQLAQFSAVEQS 69

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNT 119
            + N+ L  +L+ +++ QA++ IG  +   +     + +GV+ ++Q+ + G  A   D T
Sbjct: 70  TKTNTHLTAMLQQHSINQANNLIGATVEVPNADGTETTTGVIKSVQILTDGSIATLEDGT 129

Query: 120 EIPITTGIRIS 130
           ++ +  GI IS
Sbjct: 130 KVALVPGIEIS 140


>gi|220934393|ref|YP_002513292.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995703|gb|ACL72305.1| flagellar hook capping protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 8/130 (6%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           +I  ++  T  E + +K    LGQ  FL+L+ITQ+++QDP +PM++ E + QLA F  + 
Sbjct: 10  DIMNKLGLTSHETANTKGDDRLGQSDFLRLMITQLENQDPFKPMESGEFLGQLAQFGTVS 69

Query: 62  QSVQMNST---LQELLKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTA 113
               +  +     + + S    QA++ + +++T     I      G+  A+QV ++    
Sbjct: 70  GIEDLQKSFNRFSQSIASGQALQAAALVDRHVTVPGDMIIMDPAEGMRGAVQVPASAEVV 129

Query: 114 ITVDNTEIPI 123
           I V N    +
Sbjct: 130 IGVYNQAGQL 139


>gi|302389665|ref|YP_003825486.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
           16646]
 gi|302200293|gb|ADL07863.1| flagellar hook capping protein [Thermosediminibacter oceani DSM
           16646]
          Length = 129

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +           + + +  +  LG+D FLKLLITQ+K+Q+P EP+ + E +AQLA FS +
Sbjct: 4   VNFTAASQTYSGDDNPAVGRAQLGKDDFLKLLITQLKYQNPLEPLDSKEYIAQLATFSSL 63

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKN--ITNADGSISGVVNAIQVSSTGLTAITVDN 118
           EQ   +NS +  +        A S+IGK       +  +SG++  +      L  I  D 
Sbjct: 64  EQLQNLNSQISAM-------SAVSFIGKTGKARIEEEYVSGIIKGVTFDKGNLNLIIGDE 116

Query: 119 TE-IPITTGIRI 129
            + +P+     I
Sbjct: 117 EKLVPLQDVYEI 128


>gi|15022423|dbj|BAB62244.1| flagellar protein [Treponema medium]
          Length = 159

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ME++T     Q      K K+ LG+D FL+LL+ Q+ HQDPT P++ ++ VAQ+A F+ +
Sbjct: 29  MEVDTI--NKQNFPEGRKPKQELGKDDFLQLLVAQLTHQDPTSPLEDTQFVAQMAQFTSL 86

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDN 118
           EQ   MN     L +    + A + +GK +      G++SG + A          + V+ 
Sbjct: 87  EQLTNMNQNFGMLNRLIGDSSAVNVVGKQVDIEQSSGTVSGTITAATRGEN--PQVQVNG 144

Query: 119 TEIPITTGIRIS 130
                +    + 
Sbjct: 145 KWYAWSDVQTVY 156


>gi|51894132|ref|YP_076823.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857821|dbj|BAD41979.1| flagellar hook assembly protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 139

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +   Q     +    LG+  FL+LL+TQ+++QDP  P+   E +AQLA FS +EQ  
Sbjct: 12  GTASGAGQTAESRRPTDQLGKMEFLQLLVTQLRYQDPLNPIDDREFMAQLAQFSALEQMT 71

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEI 121
                  E ++   L+   S +G  +           G+V A+++  +G   + + N EI
Sbjct: 72  -------ENVRWARLSYGLSLVGAAVKYWGTEGQPEIGIVYAVRI-DSGEPLLNLGNREI 123

Query: 122 PITTGIRIS 130
            +   I ++
Sbjct: 124 RLEQVIEVA 132


>gi|307699887|ref|ZP_07636938.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
 gi|307614925|gb|EFN94143.1| flagellar hook capping protein [Mobiluncus mulieris FB024-16]
          Length = 335

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 7/129 (5%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +  +K      LG+D F+KLL+  +K+QDPT+PM  ++ + Q +  + MEQ +QM   
Sbjct: 65  TDKAQTKKDDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 124

Query: 70  LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
            +   ++    Q +S +G+      I +     + +G V+A++  + G     + + ++ 
Sbjct: 125 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 184

Query: 123 ITTGIRISN 131
           +   + I++
Sbjct: 185 MEDILGIAD 193


>gi|317129202|ref|YP_004095484.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474150|gb|ADU30753.1| flagellar hook capping protein [Bacillus cellulosilyticus DSM 2522]
          Length = 149

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
           Q+  K+++   L +DAFL++LITQ+++QDP  PM+  E +AQ+A F+ +EQ   MN+ LQ
Sbjct: 15  QKQQKARNTGDLDKDAFLRILITQLQNQDPLNPMEDKEFIAQMAQFTSLEQMTNMNTNLQ 74

Query: 72  ELLKS--NNLAQASSYIGKNITNADGS-----------ISGVVNAIQVSSTGLTAITVDN 118
           + L S  N     S  IGK +                 + GVV +++  +   + +  D 
Sbjct: 75  KFLDSHQNQFVSHSELIGKEVQWERERVNEDGSKRMEVVEGVVTSVKFQNGSASLVIDDQ 134

Query: 119 TEIPITTGIRI 129
             +       I
Sbjct: 135 HTVSTKDIQVI 145


>gi|315648131|ref|ZP_07901232.1| flagellar hook capping protein [Paenibacillus vortex V453]
 gi|315276777|gb|EFU40120.1| flagellar hook capping protein [Paenibacillus vortex V453]
          Length = 188

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 12/132 (9%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 +K+ + + LG+D FL +LITQ++HQDP +PM+  E +AQ+A F+ +EQ + +N+
Sbjct: 16  AKGNVSNKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75

Query: 69  TLQELLKSNNLAQASSYIGKNITN----ADGS-----ISGVVNAIQVSSTGLTAITVDNT 119
            L  +  S +L  ASS IGK I+      DGS      SG+V++I +   G+    +  +
Sbjct: 76  QLTAM--SQSLGAASSLIGKQISWMFKPEDGSENTVMKSGIVDSI-IVRDGIHYAKIGES 132

Query: 120 EIPITTGIRISN 131
           E+ +   ++I N
Sbjct: 133 EVALDQILKIEN 144


>gi|163850128|ref|YP_001638171.1| flagellar basal body rod modification protein [Methylobacterium
           extorquens PA1]
 gi|218528732|ref|YP_002419548.1| flagellar basal body rod modification protein [Methylobacterium
           chloromethanicum CM4]
 gi|163661733|gb|ABY29100.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
 gi|218521035|gb|ACK81620.1| flagellar hook capping protein [Methylobacterium chloromethanicum
           CM4]
          Length = 138

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/109 (44%), Positives = 74/109 (67%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
            +  D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N  L  LL S+ L Q
Sbjct: 30  KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           A + IG+++T+ADG ISG V +++V+  G+ A   D  E+ + +GI IS
Sbjct: 90  ADAIIGRSLTSADGLISGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138


>gi|220917664|ref|YP_002492968.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955518|gb|ACL65902.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +      Q   + + +   LG+DAFLKLL TQ++HQDP  PM +   VAQLA FS +EQ 
Sbjct: 8   SALGALPQAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQL 67

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             +   L  L     S+N    ++ +GK +           + +++   G     V    
Sbjct: 68  GALGDKLDTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---T 117

Query: 121 IPITTGIRIS 130
           +P   G  ++
Sbjct: 118 LPADAGEAVA 127


>gi|182680452|ref|YP_001834598.1| flagellar basal body rod modification protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636335|gb|ACB97109.1| flagellar hook capping protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 141

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
              T+   +FL+LL+ ++K+QDPT P   ++ ++QLA FS +EQ VQ NS L  LL +++
Sbjct: 29  PPATVDYSSFLQLLVAELKNQDPTSPTDPTQYMSQLASFSSVEQQVQTNSKLDSLLTASS 88

Query: 79  LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           L QA + IGK IT+ADGSISG V ++ VSS   TA   +  ++ +  GI I +
Sbjct: 89  LGQAETVIGKTITSADGSISGKVQSVTVSSGTATATLDNGGQVKLADGISIGS 141


>gi|329929292|ref|ZP_08283045.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
 gi|328936661|gb|EGG33104.1| flagellar hook capping protein [Paenibacillus sp. HGF5]
          Length = 186

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 11/131 (8%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 +K+ + + LG+D FL +LITQ++HQDP +PM+  E +AQ+A F+ +EQ + +N+
Sbjct: 16  AKGNVSTKNGNGQELGKDQFLSILITQLRHQDPLQPMQDREFIAQMAQFTSLEQLMNINT 75

Query: 69  TLQELLKSNNLAQASSYIGKNITN----ADGS----ISGVVNAIQVSSTGLTAITVDNTE 120
            L  +  S +L  ASS IGK I+      DGS     SG+V++I V   G+    V  +E
Sbjct: 76  QLTAM--SQSLGAASSLIGKQISWMFKPEDGSDSVMKSGLVDSIIVRE-GVHYAKVGESE 132

Query: 121 IPITTGIRISN 131
           + +   ++I N
Sbjct: 133 VSLDQIVKIEN 143


>gi|89895711|ref|YP_519198.1| hypothetical protein DSY2965 [Desulfitobacterium hafniense Y51]
 gi|89335159|dbj|BAE84754.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 193

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 14/130 (10%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
              +K+ LG+D FLKLL+ ++ +QDP  PM   + + Q+A FS +EQ   M+ +++ L+ 
Sbjct: 28  SDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVG 87

Query: 75  ------KSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGL--TAITVDNTE--I 121
                 +++ L+Q ++ IGK +         + G+V ++Q          +  D     I
Sbjct: 88  AFGALFQNSLLSQGAAMIGKYVAGLNTEGKIVEGLVQSVQWLDGNPQLVVLLDDGKYSAI 147

Query: 122 PITTGIRISN 131
            +   I +S+
Sbjct: 148 EMNEIISVSD 157


>gi|157364670|ref|YP_001471437.1| flagellar hook capping protein [Thermotoga lettingae TMO]
 gi|157315274|gb|ABV34373.1| flagellar hook capping protein [Thermotoga lettingae TMO]
          Length = 219

 Score = 94.3 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
            + +    S+     TL +DAFL LLITQ+K+QDP EPM   + +AQL  FS +EQ   M
Sbjct: 7   YSYSTYTSSERTPSNTLDKDAFLLLLITQLKNQDPLEPMDNKDFIAQLTQFSTLEQITNM 66

Query: 67  NSTLQELLKSNN---LAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
            +++QE L        AQ++S IGK  T     I+   GV  +I         + V
Sbjct: 67  TNSIQEFLTLQEGALQAQSASLIGKYATVQANQITVSDGVSESIVFELDEAAPVIV 122


>gi|83589629|ref|YP_429638.1| flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
 gi|83572543|gb|ABC19095.1| Flagellar hook capping protein [Moorella thermoacetica ATCC 39073]
          Length = 140

 Score = 94.3 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
             K LG+D FLKLL  Q+++QDP  P+  ++ +AQ+A FS +EQ   +  +  E L    
Sbjct: 19  PNKGLGKDDFLKLLAAQLQNQDPLNPVSNTDFIAQMAQFSVLEQMNNLYESFNEAL---- 74

Query: 79  LAQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           + QA   IGK +T    D +++G V+ +  S  G+  +TV   ++ +     ++
Sbjct: 75  MLQAVGLIGKEVTARINDQTLTGTVSKVNWSPEGII-LTVGEQQVSLKDVQEVA 127


>gi|86157814|ref|YP_464599.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|85774325|gb|ABC81162.1| flagellar hook capping protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 225

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 3  INTEVNP-TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          + + +    Q   + + +   LG+DAFLKLL TQ++HQDP  PM +   VAQLA FS +E
Sbjct: 6  VTSALGALPQPGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVE 65

Query: 62 QSVQMNSTLQELL---KSNNLAQASSYIGKNIT 91
          Q   +   L  L     S+N    ++ +GK + 
Sbjct: 66 QLGALGDKLDTLAVAQASSNQLGTAALVGKEVL 98


>gi|312879591|ref|ZP_07739391.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
 gi|310782882|gb|EFQ23280.1| flagellar hook capping protein [Aminomonas paucivorans DSM 12260]
          Length = 139

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           +   K  LG+D FLKLLI Q+ +QDP +P+K  + +AQ+A F+ +EQ+  M   ++ L  
Sbjct: 23  ERTIKNELGKDDFLKLLIAQLTNQDPLDPLKDQDFIAQMAQFTALEQTTNMAKGIETL-T 81

Query: 76  SNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
             ++  A  Y+G+ +    +   S +G V  ++     +T    D + + +    +++
Sbjct: 82  KLSMTSAVGYVGRVVGYTDDEGNSKAGTVQYVEFKDGAVTLKLTDGSSLALDKVEQVA 139


>gi|312126826|ref|YP_003991700.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776845|gb|ADQ06331.1| flagellar hook capping protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 164

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 13/132 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V+ + Q  + S +K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ 
Sbjct: 9   NTNVSNSTQSLAASSAKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLTAITVDN 118
             +N +++       L +A S IG+ +       A   I G V++I++       + V+ 
Sbjct: 69  QNLNESVE-------LLKAQSMIGRYVVATSPQDASKLIEGRVDSIKI-DGSKVYLKVNG 120

Query: 119 TEIPITTGIRIS 130
           TE+       + 
Sbjct: 121 TEVLSDNVKEVY 132


>gi|225620906|ref|YP_002722164.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
 gi|225215726|gb|ACN84460.1| flagellar hook capping protein [Brachyspira hyodysenteriae WA1]
          Length = 264

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q  F +  ++ +LG+DAFLKLL  Q+ HQDP  PM   + +AQLA FS +EQ  ++N  L
Sbjct: 27  QHNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86

Query: 71  QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT-AITVDNTEIPITT 125
             +    +     S +GK++     A     G V  +  + TG+  A+  DN  I +  
Sbjct: 87  DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAVRTDNGLITVRP 145


>gi|218671388|ref|ZP_03521058.1| flagellar basal body rod modification protein [Rhizobium etli GR56]
          Length = 159

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 57/115 (49%), Positives = 85/115 (73%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           ++ K TL  D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L  LL S
Sbjct: 35  AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSS 94

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           ++L QASSY+GK + +ADG++ G V +++V S G+ A T D  +I +  GI +++
Sbjct: 95  SSLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 149


>gi|197122872|ref|YP_002134823.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
 gi|196172721|gb|ACG73694.1| flagellar hook capping protein [Anaeromyxobacter sp. K]
          Length = 225

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +      Q   + + +   LG+DAFLKLL TQ++HQDP  PM +   VAQLA FS +EQ 
Sbjct: 8   SALGALPQAGQAPAPASSALGKDAFLKLLTTQLQHQDPLSPMDSQAFVAQLAQFSSVEQL 67

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             +   L  L     S+N    ++ +GK +           + +++   G     V    
Sbjct: 68  GALGDKLDTLAMAQASSNQLGTAALVGKEVLF-------RADRVRLDPGGPARFEV---T 117

Query: 121 IPITTGIRIS 130
           +P   G  ++
Sbjct: 118 LPAEAGEAVA 127


>gi|115523198|ref|YP_780109.1| flagellar basal body rod modification protein [Rhodopseudomonas
           palustris BisA53]
 gi|115517145|gb|ABJ05129.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
          Length = 135

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++     N ++   S S S  T+G + FL+LLI Q+K+QDP+ P   ++ ++Q A  S +
Sbjct: 3   VDGVGAANSSKSSSSSSSSSATVGYNEFLQLLIAQMKNQDPSNPTDMAQYMSQFAQLSSV 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVD 117
           EQ++Q N+ L  LL ++ L+QA   IG+  +  D    S +G + ++ +   G  A    
Sbjct: 63  EQAIQTNAKLDTLLSTSALSQAEGLIGRTASFTDEAGHSATGKIASVSIIQGGAVATLDT 122

Query: 118 NTEIPITTGIRIS 130
             ++ +  GI IS
Sbjct: 123 GVQVLLGPGITIS 135


>gi|306817693|ref|ZP_07451435.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
           35239]
 gi|304649507|gb|EFM46790.1| flagellar hook assembly protein FlgD [Mobiluncus mulieris ATCC
           35239]
          Length = 334

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +  +K +    LG+D F+KLL+  +K+QDPT+PM  ++ + Q +  + MEQ +QM   
Sbjct: 70  TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 129

Query: 70  LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
            +   ++    Q +S +G+      I +     + +G V+A++  + G     + + ++ 
Sbjct: 130 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 189

Query: 123 ITTGIRISN 131
           +   + I++
Sbjct: 190 MEDILGIAD 198


>gi|253573525|ref|ZP_04850868.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847053|gb|EES75058.1| flagellar hook capping protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 167

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 21/140 (15%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                   S     LG+DAFLKL+I Q+++QDP  PM  ++ VAQ+A F+ +EQ   ++ 
Sbjct: 15  SQSNVQKASTKSNELGKDAFLKLMIAQMQNQDPLSPMDNTQMVAQIAQFTSVEQLTNISE 74

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSIS------------------GVVNAIQVSSTG 110
            +  L +S  L   S  IGK +T    + +                  G+V +I +  +G
Sbjct: 75  QIAALGES--LGNDSGLIGKEVTWVTETKTGNYDVSTGKAEVIIEKESGIVESI-IVRSG 131

Query: 111 LTAITVDNTEIPITTGIRIS 130
           +  + V + EI I+   ++ 
Sbjct: 132 VHYVKVGDKEIKISDIEQVG 151


>gi|227876746|ref|ZP_03994855.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227842643|gb|EEJ52843.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
          Length = 336

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 67/129 (51%), Gaps = 7/129 (5%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +  +K +    LG+D F+KLL+  +K+QDPT+PM  ++ + Q +  + MEQ +QM   
Sbjct: 72  TDKAQTKKEDPTKLGKDDFMKLLLATLKYQDPTQPMDTAQLLEQTSTMTNMEQMIQMTEA 131

Query: 70  LQELLKSNNLAQASSYIGKN-----ITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
            +   ++    Q +S +G+      I +     + +G V+A++  + G     + + ++ 
Sbjct: 132 SKRAYEAQQRVQGASMVGRTAVYDLIDDEGNAKTTAGKVDAVEFLAEGKVLAHIGDKKVK 191

Query: 123 ITTGIRISN 131
           +   + I++
Sbjct: 192 MEDILGIAD 200


>gi|319787122|ref|YP_004146597.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465634|gb|ADV27366.1| flagellar hook capping protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 221

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           +I + +       SK KS   LGQ  FL+L+  Q+KHQDP  PM+ S  + Q+A FS ++
Sbjct: 7   DIYSSLGLGPATTSKDKSDS-LGQADFLRLMTEQLKHQDPLNPMENSAFLGQMAQFSTVQ 65

Query: 62  QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110
               +NS     Q  L S+ L + ++ +G+++            GS  G V A    S  
Sbjct: 66  GIETLNSQVRAFQSALGSDQLLRGAAMVGRDVLVPSTKLALDDSGSAHGAVAAPDAGSVQ 125

Query: 111 LTAITVDNTEI 121
            T    +   +
Sbjct: 126 FTVTDANGRTV 136


>gi|298530011|ref|ZP_07017413.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509385|gb|EFI33289.1| flagellar hook capping protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 241

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
              +  + +    LG+  FLKLLITQ+++QDP +PM   E VAQLA FS +EQ   ++  
Sbjct: 18  ANNDIPRDEDPAELGKMDFLKLLITQLENQDPLDPMDDKEFVAQLAQFSSLEQLTNISEG 77

Query: 70  LQELLKSNN---LAQASSYIGKNITNADGSIS 98
           ++ + ++     +  A  +IGK I      IS
Sbjct: 78  MESMNENQARQEMLGAVGFIGKEIRADGDGIS 109


>gi|312876504|ref|ZP_07736487.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796715|gb|EFR13061.1| flagellar hook capping protein [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 164

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 3/127 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T V  + Q  + S +K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ 
Sbjct: 9   STNVPSSTQGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
             +N + + L   N + +    +  N  ++   I G V +++V       + V+NTEI  
Sbjct: 69  QNLNESFELLKAQNMIGRY--IVATNPQDSSKQIEGRVESVKV-DGSKVYLKVNNTEISS 125

Query: 124 TTGIRIS 130
                I 
Sbjct: 126 ENVKEIY 132


>gi|221636049|ref|YP_002523925.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
 gi|221158205|gb|ACM07323.1| flagellar hook capping protein [Thermomicrobium roseum DSM 5159]
          Length = 146

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                            L + AFL LL+ Q+K+QDP  PM+  E +AQLA  + +EQ  Q
Sbjct: 8   VTTNPLSSGGGVGPGGQLDKQAFLMLLVAQLKNQDPMNPMQDREFIAQLAQLNTLEQLQQ 67

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITN----ADGSISGVVNAIQVSSTGLTAITVDNTEI 121
           +N T+  + +   L Q + Y+G+ ++     +   ++G V    +              I
Sbjct: 68  LNETVAAMAQHAALGQVAGYLGRVVSGLDRTSGDLVTGTVVRATILDGAAVLELSGGQRI 127

Query: 122 PITTGIRI 129
            +   + I
Sbjct: 128 DVRDVVSI 135


>gi|254559273|ref|YP_003066368.1| Basal body rod modification protein FlgD [Methylobacterium
           extorquens DM4]
 gi|254266551|emb|CAX22315.1| FlgD ( BASAL-BODY ROD MODIFICATION PROTEIN)/hook formation protein
           [Methylobacterium extorquens DM4]
          Length = 138

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 73/109 (66%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
            +  D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N  L  LL S+ L Q
Sbjct: 30  KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 89

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           A + IG+++T+ADG  SG V +++V+  G+ A   D  E+ + +GI IS
Sbjct: 90  ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138


>gi|302872564|ref|YP_003841200.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575423|gb|ADL43214.1| flagellar hook capping protein [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 171

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           +Q  + S  K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ   +N + 
Sbjct: 17  KQGLAVSSEKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNQSF 76

Query: 71  QELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
           +       L +A S IG+ I           I G V++I+V       + V+ TE+    
Sbjct: 77  E-------LLKAQSMIGRYIVATSTQDGLKQIEGRVDSIRV-DGSKVFLKVNGTEVLSDN 128

Query: 126 GIRIS 130
              + 
Sbjct: 129 IKEVY 133


>gi|219670135|ref|YP_002460570.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
 gi|219540395|gb|ACL22134.1| flagellar hook capping protein [Desulfitobacterium hafniense DCB-2]
          Length = 184

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 72/130 (55%), Gaps = 15/130 (11%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
              +K+ LG+D FLKLL+ ++ +QDP  PM   + + Q+A FS +EQ   M+ +++ L+ 
Sbjct: 25  SDATKEVLGKDDFLKLLVAELTNQDPLSPMDNKDMITQMAQFSSLEQMNNMSKSMENLVG 84

Query: 75  ------KSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGL--TAITVDNTE-- 120
                 +++ L+Q ++ IGK++  A+    G ++G+V ++Q  +       +  D ++  
Sbjct: 85  AFGALFQNSLLSQGAALIGKHVEGANIDGSGFVNGIVESVQWLNGNPQLVLVLEDGSKAA 144

Query: 121 IPITTGIRIS 130
           + ++    ++
Sbjct: 145 VDMSDITYVA 154


>gi|121533755|ref|ZP_01665582.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
 gi|121307746|gb|EAX48661.1| flagellar hook capping protein [Thermosinus carboxydivorans Nor1]
          Length = 136

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 11/117 (9%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
           K    LG+D FLKLL+ Q+++QDP +PM+  E +AQ+A FS +EQ   +NST+  +    
Sbjct: 22  KKNDQLGKDDFLKLLVAQLRYQDPMKPMEDKEFIAQMAQFSSLEQIQNLNSTMVTM---- 77

Query: 78  NLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
              QA   IGK +   + +    +G V A+++ S     I V +T + ++    +  
Sbjct: 78  ---QAMGLIGKTVRWQNENGAEQAGNVRAVKI-SDRQPYIVVGDTTVELSKIQVVEE 130


>gi|240137262|ref|YP_002961731.1| FlgD (basal-body rod modification protein)/hook formation protein
           [Methylobacterium extorquens AM1]
 gi|240007228|gb|ACS38454.1| FlgD (basal-body rod modification protein)/hook formation protein
           [Methylobacterium extorquens AM1]
          Length = 135

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/109 (44%), Positives = 73/109 (66%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
            +  D FL LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N  L  LL S+ L Q
Sbjct: 27  KMNADTFLTLLMAQLQNQDPTKPMDSTEYVGQLATFSQVEQATKTNQKLDSLLTSSFLNQ 86

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           A + IG+++T+ADG  SG V +++V+  G+ A   D  E+ + +GI IS
Sbjct: 87  ADAIIGRSLTSADGLTSGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 135


>gi|229017041|ref|ZP_04173961.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
 gi|229023222|ref|ZP_04179733.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
 gi|228738147|gb|EEL88632.1| Flagellar hook assembly protein [Bacillus cereus AH1272]
 gi|228744312|gb|EEL94394.1| Flagellar hook assembly protein [Bacillus cereus AH1273]
          Length = 192

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ      S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVHSPVQQTNGVSASTQKTPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLT 112
            MEQ   M   +  L   + S  L     ++GK +         ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGEGNKVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + +DN  + +    RIS+
Sbjct: 147 QLVIDNKVVSLRFVERISD 165


>gi|241203129|ref|YP_002974225.1| flagellar basal body rod modification protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857019|gb|ACS54686.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 144

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/112 (49%), Positives = 82/112 (73%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           K TL  D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ++Q N+ L  LL S++L
Sbjct: 24  KATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQTIQTNTKLDTLLASSSL 83

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            QASSY+GK + +ADG++ G + +++V S G+ A T D   I +  GI +++
Sbjct: 84  TQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 135


>gi|194365681|ref|YP_002028291.1| flagellar basal body rod modification protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348485|gb|ACF51608.1| flagellar hook capping protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 227

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++ + +       + +K K TL Q  FL+L+  Q++HQDP +PM  ++ VAQ+A  S ++
Sbjct: 12  DVYSALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71

Query: 62  QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110
               +N T    QE + S+ + + ++ +G  +           +G++ G V A       
Sbjct: 72  GITDLNKTVKGFQESMASDQVLRGAALVGHEVLVPSEKLVLEKEGTVEGTVAAPAAGIVT 131

Query: 111 LTAITVDNTEIP 122
           +     +  ++ 
Sbjct: 132 VDITDANGAKVT 143


>gi|312135847|ref|YP_004003185.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
 gi|311775898|gb|ADQ05385.1| flagellar hook capping protein [Caldicellulosiruptor owensensis OL]
          Length = 170

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 13/119 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S +K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ   +N++ + L   
Sbjct: 22  SANKNILGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNNSFEFLKAQ 81

Query: 77  NNLAQASSYIGKNITNADG-----SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
                  S IG+ +   +       I G V++I+V       + V++TE+       + 
Sbjct: 82  -------SMIGRYVIATNAQDGARQIEGRVDSIRV-DGSKVFLKVNDTEVLSDNVKEVY 132


>gi|300870372|ref|YP_003785243.1| flagellar hook capping protein FlgD [Brachyspira pilosicoli
           95/1000]
 gi|300688071|gb|ADK30742.1| flagellar hook capping protein, FlgD [Brachyspira pilosicoli
           95/1000]
          Length = 233

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q  F +  +K +LG+D FLKLL  Q+ HQDP  PM   + +AQLA FS +EQ  ++N  L
Sbjct: 27  QHNFERDPAKNSLGKDDFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86

Query: 71  QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAIT 115
           + +    +     S +GK++     A     G V  +  + TG+    
Sbjct: 87  ESMKTFYSSQSGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134


>gi|268316349|ref|YP_003290068.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
 gi|262333883|gb|ACY47680.1| flagellar hook capping protein [Rhodothermus marinus DSM 4252]
          Length = 230

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 7/98 (7%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                  + +   + L ++AFL+LL+TQ+++QDP  P+ + E  AQLA FS +EQ + +N
Sbjct: 15  ALQSTPSAPAPPSQELDKEAFLRLLVTQLRYQDPINPLDSREFAAQLAQFSTVEQLIGIN 74

Query: 68  STLQELLKSNNLAQA-------SSYIGKNITNADGSIS 98
            TL     +             +  +GK I      ++
Sbjct: 75  ETLAAQSDAYAALAQGIHNSVAAGLVGKVIEAEGDRLT 112


>gi|312792654|ref|YP_004025577.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179794|gb|ADQ39964.1| flagellar hook capping protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 164

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 13/124 (10%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
           Q  + S +K  LG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ   +N + +
Sbjct: 17  QGLATSSTKNVLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE 76

Query: 72  ELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
                  L +A S IG+ +   +       I G V +++V       + V+NTEI     
Sbjct: 77  -------LLKAQSMIGRYVVATNPQDSSKQIEGRVESVKV-DGSKVYLKVNNTEISSENV 128

Query: 127 IRIS 130
             I 
Sbjct: 129 KEIY 132


>gi|256830200|ref|YP_003158928.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579376|gb|ACU90512.1| flagellar hook capping protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 226

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
               +     LG+DAFLKLL+TQ+++QDP  P+   E +AQLA FS +EQ   ++  ++ 
Sbjct: 14  GADTAAKNDVLGKDAFLKLLVTQLQNQDPLNPLDDKEFIAQLAQFSSLEQMTNISEGIKG 73

Query: 73  LL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITVDNTEIPITTG 126
           L       ++  A +YIGK +T +   I+     V  +  +  G  A    N        
Sbjct: 74  LSDKTAQQDMLSAVNYIGKEVTASGDGITKSGNYVTPVYFTLGGAAAQVYANVYDENNNI 133

Query: 127 IR 128
           +R
Sbjct: 134 VR 135


>gi|295696120|ref|YP_003589358.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
 gi|295411722|gb|ADG06214.1| flagellar hook capping protein [Bacillus tusciae DSM 2912]
          Length = 151

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M               +     L +++FL+LL+ Q+K+QDP +PM +++ ++QLA FS +
Sbjct: 9   MNAANSSGYASPTSVINP-NSQLDKNSFLQLLVAQLKNQDPLQPMDSTQFISQLAQFSAL 67

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDN 118
           EQ   +    ++   +  +  A+ +IGK I+  D  G+I   V        GL  + +  
Sbjct: 68  EQMTNVAEGQEKAATATEMQAAAEWIGKRISYLDDKGNIQSGVAQAMQVKEGLVYLDLGG 127

Query: 119 TEIPITTGIRISN 131
             +P ++ + + +
Sbjct: 128 LSVPWSSILEVGD 140


>gi|56964027|ref|YP_175758.1| flagellar basal body rod modification protein [Bacillus clausii
           KSM-K16]
 gi|56910270|dbj|BAD64797.1| flagellar basal-body rod modification protein FlgD [Bacillus
           clausii KSM-K16]
          Length = 144

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 7/134 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++  +  +  +  + +    LGQDAFLKLLITQ+++QDP+ P++  E +AQLA FSQ+EQ
Sbjct: 4   VDPSLWLSSSQNQQRQPNNALGQDAFLKLLITQLQNQDPSNPIEDREFIAQLATFSQLEQ 63

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITV 116
             ++NST++ +    KS  L   S  IGK++   +         V  ++ S +G   + +
Sbjct: 64  LTKLNSTMEYMYYEQKSQQLMALSELIGKSVEWLNEKEKVEQATVTGVKYSESGDLLVQI 123

Query: 117 -DNTEIPITTGIRI 129
            D+  I  +  I I
Sbjct: 124 DDDKWIEASKLISI 137


>gi|303240281|ref|ZP_07326800.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
 gi|302592191|gb|EFL61920.1| flagellar hook capping protein [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 16/137 (11%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I   ++ T    +  ++   LG+D F+ LL+TQ+++QDP  P   ++ +AQ+A FS +EQ
Sbjct: 12  IQQIIDDTSATKASERNTGELGKDEFINLLVTQLQYQDPLNPQDDTQFIAQMAQFSALEQ 71

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114
              +N+       S +  QA   IGK +T            +I+G V ++++  +G   +
Sbjct: 72  MQNLNT-------SYSATQAFGMIGKTVTANLKDGDSSKTNTITGEVTSVKM-QSGKAYV 123

Query: 115 TVDNTEIPITTGIRISN 131
            V+  +IP+     + +
Sbjct: 124 IVNGNDIPVENVQEVKD 140


>gi|188579930|ref|YP_001923375.1| flagellar basal body rod modification protein [Methylobacterium
           populi BJ001]
 gi|179343428|gb|ACB78840.1| flagellar hook capping protein [Methylobacterium populi BJ001]
          Length = 138

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 74/110 (67%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
             +  D FL+LL+ Q+++QDPT+PM ++E V QLA FSQ+EQ+ + N  L  LL S+ L 
Sbjct: 29  SKMNADTFLQLLMAQLQNQDPTKPMDSTEYVGQLASFSQVEQATKTNQKLDSLLASSFLN 88

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           QA + IG++IT+ADG  +G V +++V+  G+ A   D  E+ + +GI IS
Sbjct: 89  QADAIIGRSITSADGLTTGTVQSVRVTGDGVMAKLTDGREMLLASGISIS 138


>gi|326791536|ref|YP_004309357.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
 gi|326542300|gb|ADZ84159.1| flagellar hook capping protein [Clostridium lentocellum DSM 5427]
          Length = 270

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
             + K +  L +DAF+ LL+TQ+K+QDP +P+  SE +AQLA F+ +EQ + +    Q+ 
Sbjct: 19  TEEVKEQSELDKDAFINLLVTQMKYQDPLDPVDNSEMLAQLAQFTALEQMMNVAQASQKQ 78

Query: 74  LKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           L +  + +   Y+ K+  T     + G V+ ++VS      + + + E+ +    ++ +
Sbjct: 79  LANGMIGKYVEYLYKDSETGTSEYLVGKVDYVKVSGDTPV-LGIGDVEVNLEDVYQVYD 136


>gi|146277709|ref|YP_001167868.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555950|gb|ABP70563.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 225

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +       +  +++K    LGQ+ FLKLL TQ+++QDP +PM+  E +AQ+A FS +
Sbjct: 7   VDGSYAAGLAMKTATQAKGSSNLGQEDFLKLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 66

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
               Q+N TL  +   L S   A A+S IG+++    
Sbjct: 67  SGIEQLNGTLSGIGEGLGSFRTATAASLIGRSVLVPG 103


>gi|229029433|ref|ZP_04185516.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
 gi|228731892|gb|EEL82791.1| Flagellar hook assembly protein [Bacillus cereus AH1271]
          Length = 192

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
              + K+   +G+D FLKL +   +HQDP   M  ++ + Q A  S MEQ   M     +
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100

Query: 70  LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           L+  + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LKSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|323490148|ref|ZP_08095368.1| flagellar basal body rod modification protein [Planococcus
           donghaensis MPA1U2]
 gi|323396196|gb|EGA89022.1| flagellar basal body rod modification protein [Planococcus
           donghaensis MPA1U2]
          Length = 143

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 9/138 (6%)

Query: 1   MEINTEVN---PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
           M I+T  +         +K +    LGQDAFLK+L+TQ+KHQDP EP+K +E + Q+A F
Sbjct: 1   MNISTATSGIATASASATKEEPTNALGQDAFLKILVTQMKHQDPMEPLKDTEFIGQMAQF 60

Query: 58  SQMEQSVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS--GVVNAIQVSSTGLT 112
           + +EQ   +N T+ + + +   +     +  IG ++     + S  G+V A+   +  L 
Sbjct: 61  TSLEQLTNLNKTMTQFVSNQGSSSLADYAHLIGTSVKWESETGSGEGMVKALSSKNGELL 120

Query: 113 AITVD-NTEIPITTGIRI 129
           A     +T++PI + I I
Sbjct: 121 AELEGSDTKVPIASIIHI 138


>gi|47566135|ref|ZP_00237173.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
 gi|47557052|gb|EAL15382.1| Basal-body rod modification protein flgD [Bacillus cereus G9241]
          Length = 192

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                   + K+   +G+D FLKL +   +HQDP   M  ++ + Q A  S MEQ   M 
Sbjct: 36  QTNGVSAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMT 95

Query: 68  ---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121
               +L+  + S  +     ++GK +   DG+   ++G V  ++++      + +DN  +
Sbjct: 96  KAVDSLKTTMYSTAIDGGMKFLGKYVRGVDGNGKKVTGQVETVRLAENNEVQLVIDNKVV 155

Query: 122 PITTGIRISN 131
            +    R+S+
Sbjct: 156 SLRFVERVSD 165


>gi|94987009|ref|YP_594942.1| flagellar hook capping protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731258|emb|CAJ54621.1| Flagellar hook capping protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 279

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + V+     FS+   K  LG++ FLKLL+TQ K+QDP  PM+  E +AQLA FS +EQ +
Sbjct: 7   SGVSSATGIFSQQAGKSELGKEDFLKLLVTQFKYQDPLNPMEDKEFIAQLAQFSALEQQM 66

Query: 65  QMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
             N  ++ LL       +  A+S+IGK +      +S   + I      +    V  
Sbjct: 67  STNEKMESLLNLQTQQQMISAASFIGKEVAARGYGVSVKGDTISNIQYAINEEMVKG 123


>gi|229160716|ref|ZP_04288708.1| Flagellar hook assembly protein [Bacillus cereus R309803]
 gi|228622731|gb|EEK79565.1| Flagellar hook assembly protein [Bacillus cereus R309803]
          Length = 192

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P  Q      S+ K+   + +D FLKL +   +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVGQTNGVSASEQKAPGVMEKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTG 110
            S MEQ   M   +  L   + S  L     ++GK    +      ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + +DN  + +    R+S+
Sbjct: 145 EVQLVIDNKVVSLRFVERVSD 165


>gi|149912819|ref|ZP_01901353.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
 gi|149813225|gb|EDM73051.1| Possible FlgD protein [Roseobacter sp. AzwK-3b]
          Length = 233

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 11/137 (8%)

Query: 4   NTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++  + +    +++  K  L    + FLK+L  Q+++QDP  P+++++   QLA FS +E
Sbjct: 18  SSIPSASANTTAEAPPKPALSSDFETFLKMLTAQMRNQDPLNPVESADFAVQLATFSTVE 77

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKN------ITNADGSISGVVNAIQVSSTGLT 112
           Q V+ N  L+ L   + +  ++Q S ++G        +      ++  V  + ++     
Sbjct: 78  QQVRTNDLLETLGDRMGAMGMSQLSGWVGMEARAIAPVQLDGAPVTLTVPPVPLADAAQI 137

Query: 113 AITVDNTEIPITTGIRI 129
                   I   + + I
Sbjct: 138 VARDSTGTIVQRSDVSI 154


>gi|288553058|ref|YP_003424993.1| flagellar basal body rod modification protein [Bacillus
           pseudofirmus OF4]
 gi|288544218|gb|ADC48101.1| flagellar basal body rod modification protein [Bacillus
           pseudofirmus OF4]
          Length = 169

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 15/136 (11%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
            Q + + +  +  LG+D FLKLLITQ+++QDP+ PM   E +AQ+A FS +EQ   MN+T
Sbjct: 12  NQPKPTSNTGQNMLGKDDFLKLLITQLQNQDPSNPMDDREFIAQMAQFSSLEQMTNMNNT 71

Query: 70  LQELL---KSNNLAQASSYIGKNITNADG-----------SISGVVNAIQVSSTGLTAI- 114
           +Q+ +    S +L Q S  IGK +                     V +++V   G   I 
Sbjct: 72  IQKFVDVQTSQSLVQFSELIGKEVKWVQEVDVDEYRTELQYNDNKVQSVKVDFDGTIRIL 131

Query: 115 TVDNTEIPITTGIRIS 130
             +N  I      ++S
Sbjct: 132 LDNNRWIHHEQLTQVS 147


>gi|251772437|gb|EES53004.1| flagellar hook capping protein [Leptospirillum ferrodiazotrophum]
          Length = 278

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
               KK LG + ++ ++I Q+++QDP  PM   +  +QLA FSQ++Q V MN  ++ +  
Sbjct: 27  PPPQKKKLGMEDYMNIMIRQLQYQDPFHPMDNRKFASQLAQFSQLDQLVHMNKKMEGMAN 86

Query: 76  S---NNLAQASSYIGKNITNADG 95
                +  Q   ++G+ +     
Sbjct: 87  QGRETDALQMVGFLGREVFLKGN 109


>gi|297544703|ref|YP_003677005.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842478|gb|ADH60994.1| flagellar hook capping protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 131

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 1   MEINTEVNPTQ-QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           ME+NT  + +     S++ S   LG+D FL+LL+ Q+++QDP +PM   E +AQLA FS 
Sbjct: 1   MEVNTNYSFSNVYNTSETTSNDQLGKDDFLQLLVVQLENQDPLDPMDDKELIAQLAQFSI 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNI----TNADGSISGVVNAIQ--VSSTGLTA 113
           +EQ   +N +        N  +A + IGKN+    T+ +G+ + VV  +       G   
Sbjct: 61  LEQMQNLNVSF-------NAVRAINLIGKNVYATITDDNGNSTSVVGNVDAVYKQNGEYY 113

Query: 114 ITVDNTEIPITTGIRISN 131
           + V+  ++P+     +S 
Sbjct: 114 LEVNGIDVPLDAVTAVSE 131


>gi|227820880|ref|YP_002824850.1| flagellar basal body rod modification protein [Sinorhizobium fredii
           NGR234]
 gi|227339879|gb|ACP24097.1| predicted flagellar hook capping protein FlgD [Sinorhizobium fredii
           NGR234]
          Length = 148

 Score = 91.6 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 84/108 (77%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           L   +FLKLLI Q+++QDPT+PM A+EQ++QLA FSQ+EQS++ NS L+ LL S +L QA
Sbjct: 33  LNYQSFLKLLIAQMQNQDPTDPMDATEQISQLATFSQVEQSIKTNSNLESLLASESLTQA 92

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           S+YIGK IT++DG  SGVV  ++V+S G+TAIT D  EI I TGI +S
Sbjct: 93  STYIGKTITSSDGKTSGVVAEVEVTSDGVTAITTDGKEIAIETGISVS 140


>gi|328545486|ref|YP_004305595.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
 gi|326415227|gb|ADZ72290.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
          Length = 131

 Score = 91.6 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 75/112 (66%), Gaps = 1/112 (0%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
            + TL  +AFL+L++ Q+K+QDPT+P+ +++Q+AQLA FSQ+EQ+++ N+ L+ +L + +
Sbjct: 21  DQLTLDYNAFLQLMLAQMKNQDPTDPVDSTQQLAQLATFSQVEQAMKTNTKLEAMLTNMS 80

Query: 79  LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
             Q    IG+  T+A G+ +GVV +++V S G      +   I +  G++IS
Sbjct: 81  FGQVDDLIGRTATDAIGT-TGVVTSVEVYSDGTLLGLDNGKGILLGPGVKIS 131


>gi|212639560|ref|YP_002316080.1| flagellar basal body rod modification protein [Anoxybacillus
           flavithermus WK1]
 gi|212561040|gb|ACJ34095.1| Flagellar hook capping protein [Anoxybacillus flavithermus WK1]
          Length = 163

 Score = 91.6 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 26/150 (17%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + +   +Q   +   K +LG+D FLK+LI Q++HQDP  PM+  E ++Q+A FS +EQ V
Sbjct: 15  SLLLSQRQVAQRETGKSSLGKDDFLKILIAQLQHQDPLNPMEDREFISQMANFSSLEQMV 74

Query: 65  QMNSTLQELLKSN------------------------NLAQASSYIGKNITNADGSISGV 100
            M++ L + +++                         +LAQ S +IGK +T      SGV
Sbjct: 75  NMSNMLSKFIETQTGTSEKLVGTLDALQKLIQQQSAPSLAQYSEWIGKTVTW--DEQSGV 132

Query: 101 VNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           V A+    T +         +  +   ++S
Sbjct: 133 VRAVVQKGTDIWLELEQGETVLASRVTKVS 162


>gi|302338084|ref|YP_003803290.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635269|gb|ADK80696.1| flagellar hook capping protein [Spirochaeta smaragdinae DSM 11293]
          Length = 149

 Score = 91.6 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
            ++LG+D FLKLL+TQ+++QDPT+PM+  E +AQ+A FS +EQ   ++     +  +   
Sbjct: 33  NQSLGKDDFLKLLLTQLQYQDPTKPMEDKEFIAQMAQFSSLEQMNNLSQQFVSVKNTLGR 92

Query: 80  AQASSYIGKNITN--ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
             A   IG+ +     D  I G V A+         + V+ T     +   +SN
Sbjct: 93  NAAYDLIGRQVDILQGDQKIHGTVEAVSGKD--YPQLLVNGTYYDYDSVETVSN 144


>gi|304404251|ref|ZP_07385913.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
 gi|304347229|gb|EFM13061.1| flagellar hook capping protein [Paenibacillus curdlanolyticus YK9]
          Length = 163

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 10/133 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                  Q+ + +K   TLG+D FLK+L+TQ+++QDP++P++  + +AQ+A FS +EQ +
Sbjct: 14  NYSTSNVQKAAATKKDTTLGKDDFLKILVTQLRNQDPSQPLQDRDFIAQMAQFSSVEQLM 73

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNA-------DGSISGVVNAIQVSSTGLTAITVD 117
            M+  + +L    NL  ASS IG  +            + SG+V AI +   G+    V 
Sbjct: 74  NMSEEMTKLR--QNLGSASSMIGMTVEWNGMSDTGIGTTYSGLVEAISIK-DGVQYAKVG 130

Query: 118 NTEIPITTGIRIS 130
           +  + +     I+
Sbjct: 131 DKTVKVDDLTSIT 143


>gi|254503888|ref|ZP_05116039.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
 gi|222439959|gb|EEE46638.1| flagellar hook capping protein [Labrenzia alexandrii DFL-11]
          Length = 134

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
           T+  +AFL+L++TQ+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q NS L+ +L + +  Q
Sbjct: 27  TVDYNAFLQLMMTQMKNQDPTKPMDASEQLSQLATFSQVEQAIQTNSKLETMLTNMSFGQ 86

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
               IG+ +T+++G+ +GVV  +++ S G      +   + +  G+ IS
Sbjct: 87  VDDLIGRTVTDSNGT-TGVVEKVEIYSDGTILGLDNGKGVLLGPGVSIS 134


>gi|46579855|ref|YP_010663.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120602679|ref|YP_967079.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
 gi|46449271|gb|AAS95922.1| basal-body rod modification protein FlgD [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120562908|gb|ABM28652.1| flagellar hook capping protein [Desulfovibrio vulgaris DP4]
 gi|311234144|gb|ADP86998.1| flagellar hook capping protein [Desulfovibrio vulgaris RCH1]
          Length = 265

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            I  +     Q   K      LG+DAFL+LL+TQ+KHQDP  PM   E VAQLA F+ +E
Sbjct: 7   NILGQAENEFQSAVKKSGNADLGKDAFLQLLVTQLKHQDPLNPMDDKEFVAQLAQFTSLE 66

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
           Q + +N+ +  +    K   +  A SYIGK++  +   IS + + +  
Sbjct: 67  QLMGINTGVTSMNEAFKQQQMMNAVSYIGKDVLASGDQISKIKDGVSK 114


>gi|242277988|ref|YP_002990117.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
 gi|242120882|gb|ACS78578.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
          Length = 220

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++    +N   +  +     K L +DAFLKL +TQ+K+QDP  PM   EQ+AQLA FS +
Sbjct: 2   IDTTAYLNSVNKNATPKTPSKDLNKDAFLKLFVTQLKNQDPVNPMDNKEQLAQLAQFSTV 61

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
           E+   ++  +  L   + +     A+ YIGK +      +S
Sbjct: 62  ERLTNISKAMDGLTKTVNAMMGLNATGYIGKTVMAKGFGVS 102


>gi|254460266|ref|ZP_05073682.1| flagellar scaffolding protein FlgD [Rhodobacterales bacterium
           HTCC2083]
 gi|206676855|gb|EDZ41342.1| flagellar scaffolding protein FlgD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 230

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +++  +  +     +K+ LGQD FLKL+  Q+++QDP  PM   + +AQ+A FS +    
Sbjct: 16  SKLGISTTDAKPEDAKEELGQDDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            M  TL  +   L    +  + + +G ++              +    G     +D    
Sbjct: 76  DMGKTLNTIADQLGQFRVGSSVNMLGHSVLLPGNI-------ARADDKGEVHGVLDLERT 128

Query: 122 PITTGIRISN 131
            + T +   +
Sbjct: 129 SLETRVEFLD 138


>gi|288573022|ref|ZP_06391379.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568763|gb|EFC90320.1| flagellar hook capping protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 150

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 12/130 (9%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
                 + K  + +D FLKL I Q+K+QDP EPM  +E  AQ + F+ +EQ + MNS+++
Sbjct: 15  TAGQSREIKSAMDKDDFLKLYIEQLKNQDPLEPMDTNEMAAQFSQFTTVEQLMNMNSSME 74

Query: 72  ELLKSNNLAQASSYIGKNITNA-----------DGSISGVVNAIQVSSTGLTAITVDNTE 120
           E+L S  L  A SYIG  +T +               +G+V +I   +  +     D +E
Sbjct: 75  EML-SLQLGNAVSYIGFEVTYSHAYQDDQGNQLTEEKTGIVQSISHENGSVVLKMTDGSE 133

Query: 121 IPITTGIRIS 130
             I+  I ++
Sbjct: 134 ADISRIISVA 143


>gi|163939558|ref|YP_001644442.1| flagellar basal body rod modification protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163861755|gb|ABY42814.1| flagellar hook capping protein [Bacillus weihenstephanensis KBAB4]
          Length = 192

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQEF----SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ      S  K+   +G+D FLKL ++  +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVQSPVQQTNGVSESAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112
            MEQ   M   +  L   + S  L     ++GK +   DG    ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + +DN  + +    R+S+
Sbjct: 147 QLVIDNKIVSLRFVERVSD 165


>gi|291529035|emb|CBK94621.1| Flagellar hook capping protein [Eubacterium rectale M104/1]
          Length = 237

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT     ++  S   S   LG D FLKLL  ++++QDP EP   ++ VAQ+A FSQ+E +
Sbjct: 16  NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118
           + M  ++         + A S +GK +   D     G  SG V+ +     G   ++++ 
Sbjct: 76  LSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134

Query: 119 TEIPITTGIRIS 130
                ++   +S
Sbjct: 135 KMYDYSSLYSVS 146


>gi|238924163|ref|YP_002937679.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
 gi|238875838|gb|ACR75545.1| flagellar hook capping protein [Eubacterium rectale ATCC 33656]
          Length = 237

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT     ++  S   S   LG D FLKLL  ++++QDP EP   ++ VAQ+A FSQ+E +
Sbjct: 16  NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118
           + M  ++         + A S +GK +   D     G  SG V+ +     G   ++++ 
Sbjct: 76  LSMKESMSSSYDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134

Query: 119 TEIPITTGIRIS 130
                ++   +S
Sbjct: 135 KMYDYSSLYSVS 146


>gi|291524894|emb|CBK90481.1| Flagellar hook capping protein [Eubacterium rectale DSM 17629]
          Length = 237

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT     ++  S   S   LG D FLKLL  ++++QDP EP   ++ VAQ+A FSQ+E +
Sbjct: 16  NTTPTQNRKTSSAKASGSNLGYDDFLKLLSAEMQYQDPLEPTSNTDYVAQMATFSQLEAT 75

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDN 118
           + M  ++         + A S +GK +   D     G  SG V+ +     G   ++++ 
Sbjct: 76  LSMKESMASSNDQTTKSAALSLVGKEVIVTDKDSASGYYSGKVDYVTYK-DGKIQLSINE 134

Query: 119 TEIPITTGIRIS 130
                ++   +S
Sbjct: 135 KMYDYSSLYSVS 146


>gi|324325770|gb|ADY21030.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 192

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
              + K+   +G+D FLKL +   +HQDP   M  ++ + Q A  S MEQ   M      
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100

Query: 70  LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           LQ  + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|229058386|ref|ZP_04196770.1| Flagellar hook assembly protein [Bacillus cereus AH603]
 gi|229132565|ref|ZP_04261414.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
 gi|229166593|ref|ZP_04294345.1| Flagellar hook assembly protein [Bacillus cereus AH621]
 gi|228616847|gb|EEK73920.1| Flagellar hook assembly protein [Bacillus cereus AH621]
 gi|228650911|gb|EEL06897.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST196]
 gi|228719895|gb|EEL71485.1| Flagellar hook assembly protein [Bacillus cereus AH603]
          Length = 192

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S  ++     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQTNGVSAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110
            S MEQ   M   +  L   + S  L     ++GK +   DG    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + +DN  + +    R+S+
Sbjct: 145 DVQLVIDNKIVSLRFVERVSD 165


>gi|42780845|ref|NP_978092.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
           10987]
 gi|42736765|gb|AAS40700.1| flagellar hook assembly protein family protein [Bacillus cereus
           ATCC 10987]
          Length = 192

 Score = 90.1 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
              + K+   +G+D FLKL ++  +HQDP   M  ++ + Q A  S MEQ   M   +  
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100

Query: 73  L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           L   + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKIVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|154686044|ref|YP_001421205.1| flagellar basal body rod modification protein [Bacillus
           amyloliquefaciens FZB42]
 gi|154351895|gb|ABS73974.1| YlxG [Bacillus amyloliquefaciens FZB42]
          Length = 146

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
           S   LG+D FLK+L+TQ+++QDP  P+   E ++Q+A FS +EQ + MN+T+ + +++ +
Sbjct: 27  SSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNMNTTMTKFVENQD 86

Query: 79  -LAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
                 ++IGKN+T +D      +  VN+++ S+     +  +  E+       +S 
Sbjct: 87  PFTMYVNWIGKNVTFSDSDGKDQTSPVNSVKHSNGNYVLVLENGKEVSPWNVTAVSE 143


>gi|222095376|ref|YP_002529436.1| flagellar basal body rod modification protein [Bacillus cereus Q1]
 gi|221239434|gb|ACM12144.1| basal-body rod modification protein [Bacillus cereus Q1]
          Length = 192

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
              + K+   +G+D FLKL +   +HQDP   M  ++ + Q A  S MEQ   M      
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100

Query: 70  LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           LQ  + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|220904529|ref|YP_002479841.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868828|gb|ACL49163.1| flagellar hook capping protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 284

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              N         +    L +D+F+ LL+TQ K+QDP  PM+  E +AQ+A FS +EQ +
Sbjct: 9   NRTNNEFNTALSKQKGSNLDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQMAQFSSLEQLM 68

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            +N++++ L     +  +  A+SYIGK +T +  +I G V       + +T       + 
Sbjct: 69  NLNTSMEGLTNATNNQQMINATSYIGKQVTVSGNTI-GKVTDETTKESTITRFRYAPADN 127

Query: 122 PITTGIRISN 131
            +   I + +
Sbjct: 128 TVGGTITVRD 137


>gi|327441048|dbj|BAK17413.1| flagellar hook capping protein [Solibacillus silvestris StLB046]
          Length = 231

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
            N    + +  +    LG+DAFLK+LITQ+++QDPT PM   E ++Q+A FS +EQ   M
Sbjct: 13  ANNPNFKVTDKQDNGALGKDAFLKILITQLQNQDPTSPMDDKEFISQMAQFSSLEQMQNM 72

Query: 67  NSTLQE---LLKSNNLAQASSYIGKNITNAD-------------GSISGVVNAIQVSSTG 110
              ++      + + L   ++++GK +   +                 G +  ++  +  
Sbjct: 73  TKAMENLLQSQQQSQLMSYTTFVGKEVKWHEITDKVDADNKPIYNEGIGTIQELKFVNGE 132

Query: 111 LTAITVDNTEIPITTGIRI 129
              +  D  EI       I
Sbjct: 133 AVFVLADGKEIKPGNISSI 151


>gi|51246515|ref|YP_066399.1| basal-body rod modification protein FlgD [Desulfotalea psychrophila
           LSv54]
 gi|50877552|emb|CAG37392.1| related to basal-body rod modification protein (FlgD) [Desulfotalea
           psychrophila LSv54]
          Length = 248

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    T+G+  FL LL+ Q+++QDP  P + +E  AQLA FS +EQ + +N  +  ++ S
Sbjct: 26  SGKNSTMGKQEFLTLLVAQLQNQDPLNPDEGTEFTAQLAQFSSLEQLMSINKGMGNMITS 85

Query: 77  NNLAQASSY---IGKNITNADGSISGVVNAIQV 106
            + +   +    IGK +      I    + ++ 
Sbjct: 86  TSNSDNIALLNTIGKEVLYYGDEIDFQGDPVEF 118


>gi|89098637|ref|ZP_01171519.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
           B-14911]
 gi|89086599|gb|EAR65718.1| flagellar basal body rod modification protein D [Bacillus sp. NRRL
           B-14911]
          Length = 211

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 16/142 (11%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++ +  + ++  +      LG+D FLK+L+ Q+++QDP+ P++  + +AQ+A FS +EQ 
Sbjct: 7   SSLMLSSYKKDERKTGSDILGKDDFLKILMVQLQNQDPSNPLQDKDFIAQMATFSSLEQM 66

Query: 64  VQMNSTLQELLKSN---NLAQASSYIGKNITNAD-------------GSISGVVNAIQVS 107
             MN+++Q+L++     +L   S + GK I                    +G V++IQ  
Sbjct: 67  TNMNTSIQKLVQMQEQDSLIAYSEFAGKEIKWHKVAESDDPNAQPSIEEGTGRVSSIQFK 126

Query: 108 STGLTAITVDNTEIPITTGIRI 129
           +     I  D TE+       +
Sbjct: 127 NGNAVFILEDGTELGPANISEV 148


>gi|308173590|ref|YP_003920295.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606454|emb|CBI42825.1| flagellar hook assembly protein [Bacillus amyloliquefaciens DSM 7]
 gi|328553478|gb|AEB23970.1| flagellar basal body rod modification protein [Bacillus
           amyloliquefaciens TA208]
 gi|328911731|gb|AEB63327.1| flagellar hook assembly protein [Bacillus amyloliquefaciens LL3]
          Length = 143

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             + +  +   S   LG+D FLK+L+TQ+++QDP  P+   E ++Q+A FS +EQ + +N
Sbjct: 13  ASSTKSTAAVNSSTNLGKDEFLKILMTQVQNQDPLNPVDDKEFISQMATFSSLEQMMNLN 72

Query: 68  STLQELLKSNN-LAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPI 123
           +T+ + +++ +      ++IGK++T +D      +  VN+++ S+     +  +  E+  
Sbjct: 73  TTMTKYVENQDPFTMYVNWIGKSVTFSDSDGKDQTSPVNSVKHSNGNYMLVLENGKEVSP 132

Query: 124 TTGIRISN 131
                +S 
Sbjct: 133 WNVTAVSE 140


>gi|228914331|ref|ZP_04077946.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845325|gb|EEM90361.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 190

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|284041519|ref|YP_003391859.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
 gi|283945740|gb|ADB48484.1| flagellar hook capping protein [Conexibacter woesei DSM 14684]
          Length = 152

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N   N      + ++ +  LG+D FLKLLI Q+++QDP  P   +E + Q+  FS +EQ 
Sbjct: 7   NPVNNAPATYDNSTRRESFLGKDDFLKLLIGQMQNQDPLNPTDGAEYMGQMTQFSILEQI 66

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNIT-----NADG-----SISGVVNAIQVSSTGLTA 113
             +  T Q    ++  AQA   IG+ ++     N DG     S +G V ++  +S+G   
Sbjct: 67  TNLGQTTQAAASNDYDAQAIRLIGQTVSYLARVNEDGRSVLRSFTGRVESVTFTSSGPQL 126

Query: 114 ITVDNTEIPITTGIRIS 130
                T I   +  ++ 
Sbjct: 127 TIDGRTGILPVSLTKVG 143


>gi|190574264|ref|YP_001972109.1| flagellar basal body rod modification protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012186|emb|CAQ45809.1| putative basal-body rod modification protein [Stenotrophomonas
           maltophilia K279a]
          Length = 227

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++ T +       + +K K TL Q  FL+L+  Q++HQDP +PM  ++ VAQ+A  S ++
Sbjct: 12  DVYTALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71

Query: 62  QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110
               +N T    QE + S+ + + ++ +G  +           +G++ G V A       
Sbjct: 72  GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLVLEKEGNVEGTVAAPSAGIIT 131

Query: 111 LTAITVDNTEIP 122
           +        ++ 
Sbjct: 132 VDITDATGAKVT 143


>gi|65319022|ref|ZP_00391981.1| COG1843: Flagellar hook capping protein [Bacillus anthracis str.
           A2012]
          Length = 190

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAXQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|206975041|ref|ZP_03235956.1| flagellar hook assembly protein family protein [Bacillus cereus
           H3081.97]
 gi|229195965|ref|ZP_04322718.1| Flagellar hook assembly protein [Bacillus cereus m1293]
 gi|206747060|gb|EDZ58452.1| flagellar hook assembly protein family protein [Bacillus cereus
           H3081.97]
 gi|228587524|gb|EEK45589.1| Flagellar hook assembly protein [Bacillus cereus m1293]
          Length = 192

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---ST 69
              + K+   +G+D FLKL ++  +HQDP   M  ++ + Q A  S MEQ   M      
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDK 100

Query: 70  LQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           LQ  + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LQSTMYSTALDGGMKFLGKYVRGIDGDGKKVTGQVETVRLAENNDVQLVIDNKVVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|298345997|ref|YP_003718684.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
 gi|304390245|ref|ZP_07372199.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657510|ref|ZP_07910392.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236058|gb|ADI67190.1| flagellar hook capping protein [Mobiluncus curtisii ATCC 43063]
 gi|304326727|gb|EFL93971.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491982|gb|EFU81591.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 254

 Score = 89.3 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
            +   T +     ++   LG+D F+KLL+  +K+QDPTEPM  ++ + Q +  + MEQ +
Sbjct: 52  NQGQKTDKAAQTKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMI 111

Query: 65  QMNSTLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVD 117
           QM    ++  ++   AQ ++ +GK      +     +++  G ++A++  + G     + 
Sbjct: 112 QMTEASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIG 171

Query: 118 NTEIPITTGIRISN 131
             ++ ++  + I++
Sbjct: 172 KEKVEMSDILGIAD 185


>gi|217959236|ref|YP_002337784.1| flagellar basal body rod modification protein [Bacillus cereus
           AH187]
 gi|229138453|ref|ZP_04267042.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
 gi|217062964|gb|ACJ77214.1| flagellar hook assembly protein family protein [Bacillus cereus
           AH187]
 gi|228644990|gb|EEL01233.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST26]
          Length = 192

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
              + K+   +G+D FLKL ++  +HQDP   M  ++ + Q A  S MEQ   M   +  
Sbjct: 41  SAGEQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDS 100

Query: 73  L---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           L   + S  L     ++GK +   DG    ++G V  ++++      + +DN  + +   
Sbjct: 101 LRTTMYSTALDGGMKFLGKYVRGVDGDGKKVTGQVETVRLAENNEVQLVIDNKVVSLRFV 160

Query: 127 IRISN 131
            R+S+
Sbjct: 161 ERVSD 165


>gi|165869506|ref|ZP_02214165.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0488]
 gi|227815487|ref|YP_002815496.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. CDC 684]
 gi|254755248|ref|ZP_05207282.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Vollum]
 gi|164714946|gb|EDR20464.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0488]
 gi|227007323|gb|ACP17066.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. CDC 684]
          Length = 198

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|90422629|ref|YP_530999.1| flagellar basal body rod modification protein [Rhodopseudomonas
           palustris BisB18]
 gi|90104643|gb|ABD86680.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
          Length = 135

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++       T    S S +  ++G + FL+LLI Q+++QDPT P   S+ ++Q A  S +
Sbjct: 3   VDSVNAAQSTANSSSTSSTSASIGYNDFLQLLIAQMRNQDPTSPTDMSQYMSQFAQLSSV 62

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117
           EQ++Q N  L  LL ++ L+QA   IG+  +       S +G + A+ +   G  A   +
Sbjct: 63  EQAIQTNLKLDALLSTSALSQAEGLIGRTASFTAEDGQSSTGKITAVHIIQGGAVATLDN 122

Query: 118 NTEIPITTGIRIS 130
             ++ +  GI IS
Sbjct: 123 GVQVQLGPGITIS 135


>gi|254522227|ref|ZP_05134282.1| flagellar protein [Stenotrophomonas sp. SKA14]
 gi|219719818|gb|EED38343.1| flagellar protein [Stenotrophomonas sp. SKA14]
          Length = 227

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++   +       + +K K TL Q  FL+L+  Q++HQDP +PM  ++ VAQ+A  S ++
Sbjct: 12  DVYAALGLNAPNSNATKKKNTLDQADFLRLMTEQLQHQDPLKPMDNTQMVAQMAQMSTVQ 71

Query: 62  QSVQMNST---LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTG 110
               +N T    QE + S+ + + ++ +G  +           +GS+ G V A       
Sbjct: 72  GITDLNKTVKGFQESMASDQVLRGAALVGHQVLVPSEKLMLEKEGSVEGTVAAPSAGIIT 131

Query: 111 LTAITVDNTEIP 122
           +     + T++ 
Sbjct: 132 VDITDANGTKVT 143


>gi|158422276|ref|YP_001523568.1| flagellar basal body rod modification protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329165|dbj|BAF86650.1| flagellar hook assembly scaffolding protein [Azorhizobium
           caulinodans ORS 571]
          Length = 138

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           +  + FL+LL+ Q+K+QDPT+PM ++  ++QLA FSQ+EQ    N  L  LL ++ L  A
Sbjct: 29  VDYNQFLQLLVAQLKNQDPTQPMDSTAYLSQLASFSQVEQQTNTNKKLDTLLSASALQSA 88

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLT-AITVDNTEIPITTGIRIS 130
            + IGK +T+ADG++SG V ++ + S G   A   D +++ + + + IS
Sbjct: 89  DAAIGKTVTSADGTVSGTVASVSLVSGGAPIATLKDGSKVTLDSSVSIS 137


>gi|119477954|ref|ZP_01618054.1| Flagellar hook capping protein [marine gamma proteobacterium
           HTCC2143]
 gi|119448867|gb|EAW30109.1| Flagellar hook capping protein [marine gamma proteobacterium
           HTCC2143]
          Length = 224

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 11/123 (8%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +E++  ++    +  K+ LGQD FL+L++TQ+++Q+P +P   SE VAQLA FS +E   
Sbjct: 11  SELSAREKYAPANTEKQELGQDVFLELMVTQMRNQNPLDPQDNSEFVAQLAQFSSVEGLD 70

Query: 65  QMNSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTA 113
           ++N+T++  +   +SN   QAS+ +G+++          ADG ++G +   Q +      
Sbjct: 71  KLNNTMEGFVGSFQSNQALQASALVGRSVKVDSDTSYLAADGRVAGTIELPQSTDDLSVI 130

Query: 114 ITV 116
           +  
Sbjct: 131 VYD 133


>gi|77463653|ref|YP_353157.1| flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1]
 gi|221639496|ref|YP_002525758.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131]
 gi|77388071|gb|ABA79256.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides 2.4.1]
 gi|221160277|gb|ACM01257.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides KD131]
          Length = 223

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +       Q  +++K K  LGQ  FL LL TQ+++QDP +PM+  E +AQ+A FS +
Sbjct: 5   VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113
               Q+NSTL  +   L +   A A+S IGK++      +    +G V      +    A
Sbjct: 65  SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124

Query: 114 ITV 116
           + V
Sbjct: 125 LVV 127


>gi|196033351|ref|ZP_03100763.1| flagellar hook capping protein [Bacillus cereus W]
 gi|195993785|gb|EDX57741.1| flagellar hook capping protein [Bacillus cereus W]
          Length = 190

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   KHQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFKHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  NNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|297617145|ref|YP_003702304.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144982|gb|ADI01739.1| flagellar hook capping protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 171

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 1   MEINTEVNPTQQEF-SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M ++   +       + +   + LG+D F KLLIT++K+QDP EPMK  E +AQ+A FS 
Sbjct: 1   MPVSGVTSSESSTAITSAAKSQILGKDDFFKLLITELKYQDPLEPMKDREFIAQMASFSS 60

Query: 60  MEQSVQMNSTLQELLKSNNL-----------AQASSYIGKNITNAD--GSISGVVNAIQV 106
           +EQ   MN+ LQ L  + N             +A + +G+ I      G+  G V +I V
Sbjct: 61  LEQMYNMNTNLQSLSTALNSYVSTLSSNLSWQEALALLGQEIEFETAAGTACGRVESI-V 119

Query: 107 SSTGLTAITVDNTEIPITTGIRI 129
              G+  +TV+  ++ +     +
Sbjct: 120 LKDGVPYLTVNGEQVSLAQVTSV 142


>gi|94267502|ref|ZP_01290901.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
 gi|93451979|gb|EAT02689.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
          Length = 223

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M I++ + P           K     +L +  F+KL ITQ+++QDP +PM + E  +QLA
Sbjct: 1   MAIDSMMGPGVPMAEPAGAIKPVGSDSLDRADFMKLFITQLQYQDPMQPMDSYEMASQLA 60

Query: 56  VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
            FS ME +++M+  +++LL    S N  Q    IGKNI  A   IS
Sbjct: 61  QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106


>gi|332298238|ref|YP_004440160.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
 gi|332181341|gb|AEE17029.1| flagellar hook capping protein [Treponema brennaborense DSM 12168]
          Length = 146

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 4/116 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             + + LG+D FLKLL+TQ+ +QDPT PM+ +E +AQ+A FS +EQ   M+S   +L   
Sbjct: 31  RTASQQLGKDDFLKLLLTQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMSSEFTKLANM 90

Query: 77  NNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            N  +A S +GKN+     D ++SGVV ++         I V+     +     + 
Sbjct: 91  LNSNEAVSLLGKNVELNAGDAAVSGVVESVT--RGAAPQIKVNGMLYSMDQINAVY 144


>gi|126462485|ref|YP_001043599.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126104149|gb|ABN76827.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 223

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +       Q  +++K K  LGQ  FL LL TQ+++QDP +PM+  E +AQ+A FS +
Sbjct: 5   VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113
               Q+NSTL  +   L +   A A+S IGK++      +    +G V      +    A
Sbjct: 65  SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124

Query: 114 ITV 116
           + V
Sbjct: 125 LVV 127


>gi|95929856|ref|ZP_01312597.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134152|gb|EAT15810.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
          Length = 222

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N   +  Q   + S     LG+  FL L++ Q+K+QDP  P  A+E  AQLA FS +EQ 
Sbjct: 9   NAASSNAQLSSALSSGANALGKQDFLTLMVEQLKNQDPMNPSDATEFTAQLAQFSSLEQL 68

Query: 64  VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             +N  L+ +  ++       A + IG ++  A         A+Q         +  +  
Sbjct: 69  FNVNDNLESMGNTSAEVQRLSALALIGTDVVTASSEFEFSGGAVQFGYDLDGPASEGSLY 128

Query: 121 IPITTGIRIS 130
           I    G  ++
Sbjct: 129 IRNAAGDTVA 138


>gi|94264100|ref|ZP_01287899.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
 gi|93455516|gb|EAT05706.1| Flagellar hook capping protein [delta proteobacterium MLMS-1]
          Length = 223

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNP-----TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M I++ + P          +K     +L +  F+KL ITQ+++QDP EPM + E  +QLA
Sbjct: 1   MAIDSMMGPGVPMAEPPNPNKPVGSDSLDRADFMKLFITQLQYQDPMEPMDSYEMASQLA 60

Query: 56  VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
            FS ME +++M+  +++LL    S N  Q    IGKNI  A   IS
Sbjct: 61  QFSNMEATMKMSDNMEKLLDYQKSQNNLQLLGLIGKNIETAGNEIS 106


>gi|30261750|ref|NP_844127.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Ames]
 gi|47526974|ref|YP_018323.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49184582|ref|YP_027834.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Sterne]
 gi|49477316|ref|YP_035872.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|167633353|ref|ZP_02391678.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0442]
 gi|167639172|ref|ZP_02397445.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0193]
 gi|170686321|ref|ZP_02877543.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0465]
 gi|170706446|ref|ZP_02896906.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0389]
 gi|177650541|ref|ZP_02933508.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0174]
 gi|190566416|ref|ZP_03019334.1| flagellar hook assembly protein family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196045133|ref|ZP_03112366.1| flagellar hook assembly protein family protein [Bacillus cereus
           03BB108]
 gi|218902867|ref|YP_002450701.1| flagellar hook assembly protein family protein [Bacillus cereus
           AH820]
 gi|228933036|ref|ZP_04095899.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228984837|ref|ZP_04145008.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090714|ref|ZP_04221947.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
 gi|229155323|ref|ZP_04283434.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
 gi|229600498|ref|YP_002866148.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0248]
 gi|254683243|ref|ZP_05147104.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723829|ref|ZP_05185615.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. A1055]
 gi|254734596|ref|ZP_05192308.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254741005|ref|ZP_05198693.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Kruger B]
 gi|254759784|ref|ZP_05211808.1| flagellar basal body rod modification protein [Bacillus anthracis
           str. Australia 94]
 gi|300117327|ref|ZP_07055117.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
 gi|301053290|ref|YP_003791501.1| flagellar hook assembly protein [Bacillus anthracis CI]
 gi|30255978|gb|AAP25613.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. Ames]
 gi|47502122|gb|AAT30798.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178509|gb|AAT53885.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. Sterne]
 gi|49328872|gb|AAT59518.1| basal-body rod modification protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|167512962|gb|EDR88335.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0193]
 gi|167531391|gb|EDR94069.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0442]
 gi|170128544|gb|EDS97411.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0389]
 gi|170670018|gb|EDT20759.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0465]
 gi|172083685|gb|EDT68745.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0174]
 gi|190562551|gb|EDV16518.1| flagellar hook assembly protein family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196024135|gb|EDX62809.1| flagellar hook assembly protein family protein [Bacillus cereus
           03BB108]
 gi|218537170|gb|ACK89568.1| flagellar hook assembly protein family protein [Bacillus cereus
           AH820]
 gi|228628248|gb|EEK84964.1| Flagellar hook assembly protein [Bacillus cereus ATCC 4342]
 gi|228692656|gb|EEL46382.1| Flagellar hook assembly protein [Bacillus cereus Rock3-42]
 gi|228774889|gb|EEM23284.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228826637|gb|EEM72408.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229264906|gb|ACQ46543.1| flagellar hook assembly protein family protein [Bacillus anthracis
           str. A0248]
 gi|298725162|gb|EFI65814.1| flagellar basal body rod modification protein [Bacillus cereus SJ1]
 gi|300375459|gb|ADK04363.1| flagellar hook assembly protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 190

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|311030123|ref|ZP_07708213.1| hypothetical protein Bm3-1_06191 [Bacillus sp. m3-13]
          Length = 217

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I++++    +    S     +G+D FL+LLI Q+++QDP  PM+  E +AQ+A FS +EQ
Sbjct: 5   ISSDLYIQNRPVETSNQNNVMGKDDFLRLLIAQLQNQDPLNPMEDREFIAQMANFSSLEQ 64

Query: 63  SVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI----------SGVVNAIQVSST 109
              +N +++  + + N     S    +G  +T     +          +G V +I +   
Sbjct: 65  MANLNKSMEGFIDTQNKMNVLSLQQYLGSELTWQHTYMVEDEPFVEMKNGTVASISMQDG 124

Query: 110 GLTAITVDNTEIPITTGIRIS 130
               I  D +EI +    +++
Sbjct: 125 KARLIMDDGSEITVEQITKVN 145


>gi|296126536|ref|YP_003633788.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
 gi|296018352|gb|ADG71589.1| flagellar hook capping protein [Brachyspira murdochii DSM 12563]
          Length = 263

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q  F +  ++ +LG+DAFLKLL  Q+ HQDP  PM   + +AQLA FS +EQ  ++N  L
Sbjct: 27  QNNFQRDPTQNSLGKDAFLKLLTVQMSHQDPLSPMDNRDMIAQLAQFSSVEQMTEVNKNL 86

Query: 71  QELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAIT 115
             +    +     S +GK++     A     G V  +  + TG+    
Sbjct: 87  DSMKTFYSSQTGYSMLGKSVEVMDEAGNRFLGPVEMVMENDTGVALAV 134


>gi|239815262|ref|YP_002944172.1| flagellar hook capping protein [Variovorax paradoxus S110]
 gi|239801839|gb|ACS18906.1| flagellar hook capping protein [Variovorax paradoxus S110]
          Length = 133

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            ++      + +    +LG + FLK+L+TQ+ +QDP +PM   E +AQ+A F+ +EQ+ Q
Sbjct: 2   AIDAISGSTATNLQASSLGMEDFLKILLTQLTYQDPLKPMDNQEFMAQMAQFTSLEQTQQ 61

Query: 66  MNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
           +N+ ++ L+ +    Q+   IGK +      G+++G V+A+ +S               +
Sbjct: 62  LNNKIETLITNQAALQSVGLIGKTVDVNTPTGAVTGTVSALSLSGDAPLLTVRTAAGAVL 121

Query: 124 TTG 126
              
Sbjct: 122 ANI 124


>gi|229078935|ref|ZP_04211487.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
 gi|228704349|gb|EEL56783.1| Flagellar hook assembly protein [Bacillus cereus Rock4-2]
          Length = 192

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + S  L     ++GK +   DG    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + ++N  + +    R+S+
Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165


>gi|228958032|ref|ZP_04119768.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229189849|ref|ZP_04316860.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
 gi|228593657|gb|EEK51465.1| Flagellar hook assembly protein [Bacillus cereus ATCC 10876]
 gi|228801657|gb|EEM48538.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 190

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S S +     + +D FLKL +   +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + +  L     ++GK +    N    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + VDN  + +    R+S+
Sbjct: 145 DVQLIVDNQVVSLRFVERVSD 165


>gi|168334551|ref|ZP_02692707.1| flagellar hook assembly protein [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 266

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q +    +  + LG+DAF+ LLITQ+++QDP  PM  SE +AQ+A F+ +EQ + +    
Sbjct: 18  QNKPETREPDQDLGKDAFMSLLITQLQYQDPLSPMDNSEMMAQMAQFTALEQMMNVALAT 77

Query: 71  QELLKSNNLAQASSYIGKNI-TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
            +    + +     Y  KN+ T      SG V  ++ +      + +   E+ +   I++
Sbjct: 78  NKQTALSMVGNFVEYSYKNLETGKTEYSSGKVEYVK-TQGDDALLGIGENEVKLADIIQV 136

Query: 130 SN 131
            N
Sbjct: 137 LN 138


>gi|319649560|ref|ZP_08003716.1| flagellar basal body rod modification protein D [Bacillus sp.
           2_A_57_CT2]
 gi|317398722|gb|EFV79404.1| flagellar basal body rod modification protein D [Bacillus sp.
           2_A_57_CT2]
          Length = 150

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 16/144 (11%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++ +    Q  ++      LG+D FLK+L+TQ+++QDP  PM+  + +AQ+A FS +EQ 
Sbjct: 7   SSLMLSNYQSQTRKTGSDILGKDDFLKILMTQLQNQDPMNPMQDKDFIAQMATFSSLEQM 66

Query: 64  VQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI-------------SGVVNAIQVS 107
             MN T+++L+     N L   ++++GKN+T    +              +G V +IQ  
Sbjct: 67  TNMNKTMEKLVAFQEQNQLMTYNNFLGKNVTWHKLTESSEPNEEPIIEEGTGRVVSIQYK 126

Query: 108 STGLTAITVDNTEIPITTGIRISN 131
           +     I  D T++      +++ 
Sbjct: 127 NNTAVFILDDGTKLEPANISQLNE 150


>gi|218235843|ref|YP_002366438.1| flagellar basal body rod modification protein [Bacillus cereus
           B4264]
 gi|229109209|ref|ZP_04238808.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
 gi|218163800|gb|ACK63792.1| flagellar hook assembly protein family protein [Bacillus cereus
           B4264]
 gi|228674219|gb|EEL29464.1| Flagellar hook assembly protein [Bacillus cereus Rock1-15]
          Length = 192

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + S  L     ++GK    +      ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGEGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + ++N  + +    R+S+
Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165


>gi|229043507|ref|ZP_04191217.1| Flagellar hook assembly protein [Bacillus cereus AH676]
 gi|228725885|gb|EEL77132.1| Flagellar hook assembly protein [Bacillus cereus AH676]
          Length = 190

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQE----FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ      S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVQSPVQQTNGLSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            MEQ   M      LQ  + +  L     ++GK +    N    ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + VDN  + +    R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165


>gi|309388824|gb|ADO76704.1| flagellar hook capping protein [Halanaerobium praevalens DSM 2228]
          Length = 168

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T+    + E    +    LGQDAF KLLITQ+++QDP  PM+  E V+Q+A FS +E++
Sbjct: 17  STKNKELETERKSLEGNDGLGQDAFFKLLITQLQNQDPLNPMEDREFVSQMAEFSSLEKT 76

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITVDN 118
            ++ S L++ L SN +   S  IGK IT          + GVV +I+     + A   + 
Sbjct: 77  EKLYSLLEDKLSSNQVINNSHLIGKEITANVDEGNSTGVKGVVESIKSQGDQIFAALDNG 136

Query: 119 TEIPITTGIRI 129
            E+ I    +I
Sbjct: 137 LEVDINYITQI 147


>gi|328948414|ref|YP_004365751.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
 gi|328448738|gb|AEB14454.1| flagellar hook capping protein [Treponema succinifaciens DSM 2489]
          Length = 149

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                    K ++ LG+D FLKLLITQ+ +QDPT PM+ +E +AQ+A FS +EQ   MN 
Sbjct: 26  NKSITIEGRKVQRDLGKDDFLKLLITQLSNQDPTSPMENTEFIAQMAQFSSLEQMTNMNQ 85

Query: 69  TLQELLKSNNLAQASSYIGKNITNA--DGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
              ++      +QA   IGK +     D   +GVV A+   +     + V+N    +   
Sbjct: 86  EFAKMNSMLVSSQAVGTIGKTVDITLGDTKTTGVVEAVTYGAN--PQVRVNNMYYDMKQI 143

Query: 127 IRIS 130
             + 
Sbjct: 144 SAVY 147


>gi|52143705|ref|YP_083123.1| flagellar basal body rod modification protein [Bacillus cereus
           E33L]
 gi|228945355|ref|ZP_04107710.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977174|gb|AAU18724.1| basal-body rod modification protein [Bacillus cereus E33L]
 gi|228814327|gb|EEM60593.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 190

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|315654585|ref|ZP_07907491.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
           51333]
 gi|315491049|gb|EFU80668.1| flagellar hook assembly protein FlgD [Mobiluncus curtisii ATCC
           51333]
          Length = 254

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
            +   T +     ++   LG+D F+KLL+  +K+QDPTEPM  ++ + Q +  + MEQ +
Sbjct: 52  NQGQKTDKAAETKENPGKLGKDDFMKLLLATLKYQDPTEPMDTAKLLEQTSTMTNMEQMI 111

Query: 65  QMNSTLQELLKSNNLAQASSYIGKN-----ITNADGSIS--GVVNAIQVSSTGLTAITVD 117
           QM    ++  ++   AQ ++ +GK      +     +++  G ++A++  + G     + 
Sbjct: 112 QMTEASKKSFEAQQRAQGTTMVGKTAVYDAVDAQGNAVTTAGKIDAVEFLADGKVLAHIG 171

Query: 118 NTEIPITTGIRISN 131
             ++ ++  + I++
Sbjct: 172 KEKVEMSDILGIAD 185


>gi|332558509|ref|ZP_08412831.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
 gi|6502602|gb|AAF14369.1|AF133240_3 flagellar scaffolding protein FlgD [Rhodobacter sphaeroides]
 gi|332276221|gb|EGJ21536.1| Flagellar scaffolding protein FlgD [Rhodobacter sphaeroides WS8N]
          Length = 223

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +       Q  +++K K  LGQ  FL LL TQ+++QDP +PM+  E +AQ+A FS +
Sbjct: 5   VDASYATGLALQTSTQAKGKSNLGQQDFLTLLTTQLQNQDPFQPMENGEFLAQMAQFSTV 64

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113
               Q+NSTL  +   L +   A A+S IGK++      +    +G V      +    A
Sbjct: 65  SGIEQLNSTLTGIGDGLGAFRTATAASLIGKSVLVPGTLVRADGTGTVRGAVTLTDPAEA 124

Query: 114 ITV 116
           + V
Sbjct: 125 LVV 127


>gi|196039031|ref|ZP_03106338.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
 gi|228926788|ref|ZP_04089856.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121304|ref|ZP_04250535.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
 gi|196030176|gb|EDX68776.1| flagellar hook capping protein [Bacillus cereus NVH0597-99]
 gi|228662149|gb|EEL17758.1| Flagellar hook assembly protein [Bacillus cereus 95/8201]
 gi|228832901|gb|EEM78470.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 190

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         +  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSANTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|90415319|ref|ZP_01223253.1| flagellar basal body rod modification protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332642|gb|EAS47812.1| flagellar basal body rod modification protein [marine gamma
           proteobacterium HTCC2207]
          Length = 228

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 10/130 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T     ++E + +  +  LGQDAFL L   Q+++Q+P +PM     V+QLA FS +E   
Sbjct: 12  TSDQYLEKENAVAYGEDELGQDAFLTLFTAQLQNQNPLDPMDNEAFVSQLAEFSSLEGIK 71

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            M  +L  +   ++ + +   ++ +GK +  A G+ +G        +  +T  ++D    
Sbjct: 72  GMQGSLDNMVNGMRQDQMVAGANLVGKKVQVAGGNFTG-------GNGEITKGSIDLDYG 124

Query: 122 PITTGIRISN 131
             +  + + +
Sbjct: 125 AQSVILSVYD 134


>gi|229096238|ref|ZP_04227211.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
 gi|229102352|ref|ZP_04233060.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
 gi|229115193|ref|ZP_04244603.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
 gi|228668333|gb|EEL23765.1| Flagellar hook assembly protein [Bacillus cereus Rock1-3]
 gi|228680999|gb|EEL35168.1| Flagellar hook assembly protein [Bacillus cereus Rock3-28]
 gi|228687198|gb|EEL41103.1| Flagellar hook assembly protein [Bacillus cereus Rock3-29]
          Length = 192

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVQSPVQQTNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLT 112
            MEQ   M   +  L   + S  L     ++GK +   DG    ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDSLRTTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + ++N  + +    R+S+
Sbjct: 147 QLIINNKVVSLRFVERVSD 165


>gi|218662878|ref|ZP_03518808.1| flagellar basal body rod modification protein [Rhizobium etli
           IE4771]
          Length = 146

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 84/114 (73%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
           + K TL  D FL+LLI Q+K+QDPT+PM ASEQ++QLA FSQ+EQ++Q N+ L  LL S+
Sbjct: 21  QKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFSQVEQTIQTNTKLDTLLSSS 80

Query: 78  NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           +L QASSY+GK + +ADG++ G V +++V S G+ A T D  +I +  GI +++
Sbjct: 81  SLTQASSYVGKYMESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 134


>gi|206970764|ref|ZP_03231716.1| flagellar hook assembly protein family protein [Bacillus cereus
           AH1134]
 gi|228920463|ref|ZP_04083808.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229069304|ref|ZP_04202594.1| Flagellar hook assembly protein [Bacillus cereus F65185]
 gi|229178161|ref|ZP_04305532.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
 gi|206734400|gb|EDZ51570.1| flagellar hook assembly protein family protein [Bacillus cereus
           AH1134]
 gi|228605291|gb|EEK62741.1| Flagellar hook assembly protein [Bacillus cereus 172560W]
 gi|228713791|gb|EEL65676.1| Flagellar hook assembly protein [Bacillus cereus F65185]
 gi|228839093|gb|EEM84389.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 192

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + S  L     ++GK +   DG    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + ++N  + +    R+S+
Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165


>gi|228938866|ref|ZP_04101466.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971747|ref|ZP_04132368.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978356|ref|ZP_04138733.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
 gi|228781373|gb|EEM29574.1| Flagellar hook assembly protein [Bacillus thuringiensis Bt407]
 gi|228787837|gb|EEM35795.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820715|gb|EEM66740.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939366|gb|AEA15262.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 192

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + S  L     ++GK +   DG    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + ++N  + +    R+S+
Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165


>gi|228952132|ref|ZP_04114227.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807664|gb|EEM54188.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 190

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ    S S +     + +D FLKL +   +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            MEQ   M      LQ  + +  L     ++GK +    N    ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + VDN  + +    R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165


>gi|149202209|ref|ZP_01879182.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
 gi|149144307|gb|EDM32338.1| Flagellar scaffolding protein FlgD [Roseovarius sp. TM1035]
          Length = 225

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
                 LGQ  FL L+  Q+++QDP  PM+  E +AQ+A FS +    ++N+TL ++   
Sbjct: 26  RTGNGDLGQQDFLALMTAQLQNQDPFAPMENGEFLAQMAQFSTVAGLDRVNTTLSDIGSQ 85

Query: 77  ---NNLAQASSYIGKNITNADG----SISGVVNAIQVSSTGLTAITV 116
              N +A ASS +G+ +           SG V+ +       +A+TV
Sbjct: 86  IGGNRIATASSLLGQQVLVPGSLARPDASGGVHGVADLPEAASAVTV 132


>gi|146296287|ref|YP_001180058.1| flagellar hook capping protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409863|gb|ABP66867.1| flagellar hook capping protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 169

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
             TLG+  FL LL+TQ+++QDP +PM+  E VAQLA FS +EQ   +N + +       L
Sbjct: 27  NNTLGKQEFLNLLVTQLRYQDPLKPMEDKEFVAQLAQFSALEQMQNLNESFE-------L 79

Query: 80  AQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            +A + IG+ +   +      ++ G V++I+V       + V+  E+      +I 
Sbjct: 80  IKAQNMIGRYVVATNPSDTSKTVEGRVDSIRV-DGSKIYLKVNGVEVTTENIKQIY 134


>gi|258514009|ref|YP_003190231.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777714|gb|ACV61608.1| flagellar hook capping protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 134

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +          S + S   L ++AFLKL I Q+K+QDP  P   +  + Q+A FS MEQ 
Sbjct: 6   SGVNGSASTAGSTNASGMVLDKEAFLKLFIEQLKNQDPLSPQDPNAFMNQMAQFSVMEQL 65

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTE 120
           + +N+++ +L+   NL +A+S +G+ +         ISG V  +Q+       I +D   
Sbjct: 66  MNLNTSITQLIDLQNLTEAASLVGRTVMVTGADGTEISGTVEKVQIRQNAN-KIVIDGES 124

Query: 121 IPITTGIRIS 130
             I+   +I 
Sbjct: 125 YDISQIAQIG 134


>gi|154250213|ref|YP_001411038.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
 gi|154154149|gb|ABS61381.1| flagellar hook capping protein [Fervidobacterium nodosum Rt17-B1]
          Length = 218

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M +N+ ++      +   +KK L ++AFLKLLITQ+K QDP EPMK  + +AQ++  S +
Sbjct: 3   MNVNS-MSNLFSTSTDRTTKKDLDKEAFLKLLITQLKSQDPLEPMKDRDFIAQMSQLSSL 61

Query: 61  EQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           EQ + M+ ++Q  + +       QA S IGK               +     G+    V 
Sbjct: 62  EQVMNMSKSVQSFVDTAAQLYRTQAVSMIGKTAVVKTN--------VINVENGVPESKVF 113

Query: 118 NTEIPITTGIRISN 131
           N + P    I+I +
Sbjct: 114 NLDSPANIVIKIFD 127


>gi|323705439|ref|ZP_08117014.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535341|gb|EGB25117.1| flagellar hook capping protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 134

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 14/134 (10%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+ +N        +     LG+D FL+LL+TQ+++QDP  PM   E +AQ+A FS +EQ 
Sbjct: 9   NSYMNTYTDGTKVTNPNSELGKDQFLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITN------ADGSISGVVNAIQVSSTGLTAITVD 117
             +N +        +  +A S +GK +T       +  +++G V++++   + L  + ++
Sbjct: 69  QNLNESF-------SAVKAYSLLGKTVTASVDSNGSSSTVTGKVDSVKFDGSNLY-LEIN 120

Query: 118 NTEIPITTGIRISN 131
            +++ + +   +S+
Sbjct: 121 GSDVSLDSVTSVSD 134


>gi|304310786|ref|YP_003810384.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium HdN1]
 gi|301796519|emb|CBL44727.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium HdN1]
          Length = 237

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 10/124 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST- 69
             + S  KS     +D F++L++ Q+KHQ+P +P   +E VAQLA FS +E    +N + 
Sbjct: 29  DNKASPQKSAAATDKDMFMQLMLAQLKHQNPLDPQDGTEFVAQLAQFSSLEGITNLNDSV 88

Query: 70  --LQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
             +  + +S+   QA++ +G+ +           +++           ++  +      +
Sbjct: 89  KDITSMYRSSQTLQATALVGREVLVDG-------DSVAFDGKNAALGVINAGQAASNAVM 141

Query: 128 RISN 131
            I +
Sbjct: 142 TIKD 145


>gi|291280097|ref|YP_003496932.1| flagellar basal-body rod modification protein FlgD [Deferribacter
           desulfuricans SSM1]
 gi|290754799|dbj|BAI81176.1| flagellar basal-body rod modification protein FlgD [Deferribacter
           desulfuricans SSM1]
          Length = 221

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            INT  + +    +  + KK L +D FL LL+TQ+K+QDP  P+  SE +AQ   FS +E
Sbjct: 7   NINTVTSIS--NINNREPKKELDKDDFLNLLVTQLKNQDPLNPLDNSEFIAQTTQFSSLE 64

Query: 62  QSVQMNSTLQELL-----KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116
           Q + ++    +L+      + NL  A S+I K I       S        +      +  
Sbjct: 65  QLINISEKFDKLIDNEESSNLNLFSAVSFIDKTINFYGNDFS--------ADENGALLRF 116

Query: 117 DNTEIPITTGIRISN 131
           D +  P TT I I N
Sbjct: 117 DISGTPATTNIEIYN 131


>gi|118477188|ref|YP_894339.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|225863611|ref|YP_002748989.1| flagellar hook assembly protein family protein [Bacillus cereus
           03BB102]
 gi|229183944|ref|ZP_04311160.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
 gi|118416413|gb|ABK84832.1| basal-body rod modification protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788388|gb|ACO28605.1| flagellar hook assembly protein family protein [Bacillus cereus
           03BB102]
 gi|228599596|gb|EEK57200.1| Flagellar hook assembly protein [Bacillus cereus BGSC 6E1]
          Length = 190

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T         S  K+   + +D FLKL +   +HQDP   M  ++ + Q A  S MEQ 
Sbjct: 32  STAQQANGVSASTQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQV 91

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK    ++N    ++G V  ++++      + VD
Sbjct: 92  QNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVSNNGKQVTGQVETVRLAENNDVQLIVD 151

Query: 118 NTEIPITTGIRISN 131
           N  + +    R+S+
Sbjct: 152 NQVVSLRFIERVSD 165


>gi|76581470|gb|ABA50945.1| basal-body rod modification protein FlgD [Burkholderia pseudomallei
           1710b]
          Length = 459

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 227 SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 286

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 287 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 323


>gi|30019796|ref|NP_831427.1| flagellar basal body rod modification protein [Bacillus cereus ATCC
           14579]
 gi|229127078|ref|ZP_04256077.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
 gi|229144364|ref|ZP_04272770.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
 gi|229149955|ref|ZP_04278183.1| Flagellar hook assembly protein [Bacillus cereus m1550]
 gi|296502352|ref|YP_003664052.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis BMB171]
 gi|29895341|gb|AAP08628.1| Basal-body rod modification protein flgD [Bacillus cereus ATCC
           14579]
 gi|228633636|gb|EEK90237.1| Flagellar hook assembly protein [Bacillus cereus m1550]
 gi|228639151|gb|EEK95575.1| Flagellar hook assembly protein [Bacillus cereus BDRD-ST24]
 gi|228656431|gb|EEL12270.1| Flagellar hook assembly protein [Bacillus cereus BDRD-Cer4]
 gi|296323404|gb|ADH06332.1| flagellar basal body rod modification protein [Bacillus
           thuringiensis BMB171]
          Length = 190

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 3   INTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           +N   +P QQ    S S +     + +D FLKL +   +HQDP   M  ++ + Q A  S
Sbjct: 27  VNGVQSPVQQTNGVSASNQKTPGIMDKDDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLS 86

Query: 59  QMEQSVQMN---STLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLT 112
            MEQ   M      LQ  + +  L     ++GK +    N    ++G V  ++++     
Sbjct: 87  LMEQVQNMTKAVDKLQSTMYTTALDGGMKFLGKYVRGINNKGEQVTGQVETVRLAENNDV 146

Query: 113 AITVDNTEIPITTGIRISN 131
            + VDN  + +    R+S+
Sbjct: 147 QLIVDNQVVSLRFVERVSD 165


>gi|75761136|ref|ZP_00741128.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218896685|ref|YP_002445096.1| flagellar hook assembly protein family protein [Bacillus cereus
           G9842]
 gi|228900334|ref|ZP_04064564.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
 gi|228907386|ref|ZP_04071244.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
 gi|228964736|ref|ZP_04125843.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|74491364|gb|EAO54588.1| Basal-body rod modification protein flgD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540760|gb|ACK93154.1| flagellar hook assembly protein family protein [Bacillus cereus
           G9842]
 gi|228794986|gb|EEM42485.1| Flagellar hook assembly protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228852247|gb|EEM97043.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 200]
 gi|228859369|gb|EEN03799.1| Flagellar hook assembly protein [Bacillus thuringiensis IBL 4222]
          Length = 192

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKT----LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +N   +P QQ    S   +     +G+D FLKL ++  +HQDP   M  ++ + Q A 
Sbjct: 25  VPVNGVQSPVQQSNGVSAGAQKTPGVMGKDDFLKLFLSSFQHQDPFNAMDMNQMMNQTAQ 84

Query: 57  FSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTG 110
            S MEQ   M      LQ  + S  L     ++GK +   DG    ++G V  ++++   
Sbjct: 85  LSLMEQVQNMTKAVDKLQSTMYSTALDGGMKFLGKYVRGVDGDGNKVTGQVETVRLAENN 144

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + ++N  + +    R+S+
Sbjct: 145 DVQLVINNKVVSLRFVERVSD 165


>gi|118443090|ref|YP_877981.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
 gi|118133546|gb|ABK60590.1| flagellar hook assembly protein FlgD [Clostridium novyi NT]
          Length = 274

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             T++     K  + + ++AFLK+L  ++ +QDP     +++ ++QLA FS +EQ   +N
Sbjct: 49  GATKRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQMANLN 108

Query: 68  STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           ST+       +   A + +GK +  +     G     +     +T +  D  +I ++
Sbjct: 109 STM-------SFNSAGNMVGKTVALSSYDDYG-----RQYGGTVTNVRKDGDDIILS 153


>gi|27381964|ref|NP_773493.1| flagellar basal body rod modification protein [Bradyrhizobium
           japonicum USDA 110]
 gi|27355134|dbj|BAC52118.1| hook formation protein [Bradyrhizobium japonicum USDA 110]
          Length = 140

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           +  + FL+LL+ ++K+QDPT PM  S+ ++Q A  S +EQ++Q N+ L  LL S +L+QA
Sbjct: 28  VDYNTFLQLLVAEMKNQDPTNPMDTSQYMSQFAQLSTVEQAMQTNTKLDALLSSQSLSQA 87

Query: 83  SSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
              IGK ++       + SG V +I ++S G  A   + T++ +  G+ IS
Sbjct: 88  DGLIGKTVSFTDATGATFSGKVKSISINSDGSVATLENGTKVAVGPGLTIS 138


>gi|312115275|ref|YP_004012871.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220404|gb|ADP71772.1| flagellar hook capping protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 100

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 68/100 (68%)

Query: 31  LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
           +L+ Q+++QDPT+P   ++ ++QLA FS +EQ V  NS L  LL    ++Q +S IGK +
Sbjct: 1   MLVAQLQNQDPTDPTDPTQFISQLASFSSVEQLVNANSRLDTLLTQTAISQGASLIGKTV 60

Query: 91  TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           T+ADG+ISG + +I++SS+G  A   D + I + +G+ IS
Sbjct: 61  TSADGTISGTIASIEISSSGSVATLADGSTIELASGVVIS 100


>gi|313673417|ref|YP_004051528.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940173|gb|ADR19365.1| flagellar hook capping protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 222

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ME               + KK L +D FL L+ITQ+K+QDP  PM  +E +AQ    S +
Sbjct: 5   MESVGSKTLAMLNVKPREPKKDLDKDDFLSLMITQLKNQDPLSPMNNNEFIAQTTQMSSL 64

Query: 61  EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
           EQ + +   +++       + L   +S+IGKN++    S S
Sbjct: 65  EQLINIAKLMEKQNAQSTESQLLSGASFIGKNVSYNGNSFS 105


>gi|296531798|ref|ZP_06894614.1| flagellar basal body rod modification protein FlgD [Roseomonas
           cervicalis ATCC 49957]
 gi|296267872|gb|EFH13683.1| flagellar basal body rod modification protein FlgD [Roseomonas
           cervicalis ATCC 49957]
          Length = 231

 Score = 86.6 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T +  +    ++     +   D FLKLL  Q++ QDP  P   ++ VAQLA FSQ+EQ  
Sbjct: 15  TNLAASGAPTAQLPGAGSPDFDRFLKLLTAQLRFQDPMSPTDPTQFVAQLAQFSQVEQQT 74

Query: 65  QMNSTLQ----ELLKSNNLAQASSYIGKNITNADGSIS 98
           + N+ LQ     L    +LA+ ++ +GK +     ++S
Sbjct: 75  KTNALLQGIAETLSGQASLAENAALLGKAVRTQSETVS 112


>gi|289208113|ref|YP_003460179.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
 gi|288943744|gb|ADC71443.1| flagellar hook capping protein [Thioalkalivibrio sp. K90mix]
          Length = 223

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++         LGQ  FLKL+ TQ+++QDP EPM+  E + Q+A FS +    +++ + 
Sbjct: 15  SRQQKDEGPADRLGQSDFLKLMTTQLQNQDPFEPMENGEFIGQMAQFSTVTGIEELSKSF 74

Query: 71  QELLKSN---NLAQASSYIGKNITNA--------DGSISGVVN 102
           ++L +S       QA+S +GK++           DG + G V 
Sbjct: 75  EKLAQSMGQSQTLQAASLVGKDVLVPTDFSELGTDGMVRGAVE 117


>gi|283782099|ref|YP_003372854.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
 gi|283440552|gb|ADB18994.1| flagellar hook capping protein [Pirellula staleyi DSM 6068]
          Length = 145

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T          K KS + LG D FL+L+IT++ +QDP  PM  ++ V Q+    ++  +
Sbjct: 9   STSGAGATTNSDKPKSLEDLGIDEFLQLMITELTNQDPLNPMDNAQMVEQIGQIREIASN 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTG------LTAI 114
            +++ TL  +L   +L  AS  IG+ +T  D    ++ G+V+ + +             +
Sbjct: 69  DKLSRTLDSVLTGQSLTTASGLIGREVTALDLNNENVEGIVDRVSIEVDEDDATKRTYKV 128

Query: 115 TVDNTEIPITTGIRISN 131
            + + EI +     I  
Sbjct: 129 HIGDKEIDLKNIREIKE 145


>gi|325288802|ref|YP_004264983.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964203|gb|ADY54982.1| flagellar hook capping protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 144

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                   +   S + K LG++ FL+LL+ Q+K+QDP  PM  ++ V+Q+A FS +EQ  
Sbjct: 11  GTTGSGGSDTVTSTASKDLGKNDFLQLLVAQLKYQDPMSPMDNTQFVSQMAQFSALEQMT 70

Query: 65  QMNS---TLQELLKSNNLAQASSYIGKNITNADGS-----ISGVVNAIQVSSTGLTAITV 116
            +     TL  L   + L Q S+ IGK      GS      +G VN+I++    +  + V
Sbjct: 71  NVADAIVTLTSLYSQSLLYQGSAMIGKTAAYQAGSEGQELTTGKVNSIRI-QDNVLQVQV 129

Query: 117 DNTEIPITTGIRISN 131
           D+  + +   +++S 
Sbjct: 130 DDQWVDLGNILQVSE 144


>gi|291334311|gb|ADD93972.1| predicted flagellar hook capping protein [uncultured marine
           bacterium MedDCM-OCT-S09-C247]
          Length = 230

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           +  T+Q  ++  +K TLGQ  FLKL+ TQ+++QDP  PM   + +AQ+A FS +    ++
Sbjct: 17  LGITRQAGTQKAAKDTLGQSDFLKLMTTQLQNQDPFAPMDNGDFIAQMAQFSTVTGIQEV 76

Query: 67  NSTLQELL---KSNNLAQASSYIGKNITNADG 95
           N+++ +L+       +A AS+ +G ++     
Sbjct: 77  NNSIGQLVDEFDQARIATASNLLGHSVLVPGN 108


>gi|78224297|ref|YP_386044.1| flagellar hook capping protein [Geobacter metallireducens GS-15]
 gi|78195552|gb|ABB33319.1| Flagellar hook capping protein [Geobacter metallireducens GS-15]
          Length = 218

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 3  INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
          +N     T    +  K    + +D FLKL +TQ++HQDP  P  +SE + QLA  +Q+EQ
Sbjct: 2  VNGITTDTTAAAAAMKKSTGMNKDDFLKLFVTQLQHQDPLNPADSSEFIGQLAQLTQVEQ 61

Query: 63 SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
          +   NS L +++   N      + SYIGK++T     I
Sbjct: 62 AYNTNSNLTKIIDLFNGATSLSSVSYIGKSVTANGDQI 99


>gi|114566391|ref|YP_753545.1| flagellar hook capping protein-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337326|gb|ABI68174.1| Flagellar hook capping protein-like protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 180

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 13/133 (9%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           N  Q   S  +  K L ++AFLKLL+T++K+QDP EP+K  E ++Q+A FS +EQ   +N
Sbjct: 16  NEPQSSKSSKEINKGLDKEAFLKLLLTELKYQDPIEPVKDKEFISQMANFSSLEQMTNLN 75

Query: 68  STLQELLKSNN--------LAQASSYIGKNI----TNADGSISGVVNAIQVSSTGLTAIT 115
           S+  +L  + N        + Q+S+ +G+ +     ++  S +G+++++     G+    
Sbjct: 76  SSFNKLSATLNSGILPGLVMQQSSTMVGREVFYTDPDSGASSNGIISSVVFRE-GIPYYV 134

Query: 116 VDNTEIPITTGIR 128
           +D+ EI +    R
Sbjct: 135 IDDKEITMNNISR 147


>gi|54308096|ref|YP_129116.1| flagellar basal body rod modification protein [Photobacterium
           profundum SS9]
 gi|46912522|emb|CAG19314.1| Putative basal-body rod modification protein FlgD [Photobacterium
           profundum SS9]
          Length = 238

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q   SK   +  L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   QMN   
Sbjct: 27  QDTQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAI 114
             L   + S+   QASS +G+++            G I+G+V   Q     +  I
Sbjct: 87  GSLNSAMTSSQALQASSLVGRDVLIPGATGVKKAEGGITGMVKLPQALDNMMVRI 141


>gi|74317653|ref|YP_315393.1| flagellar basal body rod modification protein [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057148|gb|AAZ97588.1| flagellar basal-body rod modification protein FlgD [Thiobacillus
           denitrificans ATCC 25259]
          Length = 221

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            +    SKS  +  QD FL LL+ Q+K+QDP  P+  +E  +Q+A  S +E    MN +L
Sbjct: 16  AEAAKTSKSGSSDTQDRFLSLLVAQMKNQDPLNPLDNAEVTSQMAQLSTVEGIENMNKSL 75

Query: 71  QELLKSN---NLAQASSYIGKNITNADGSI 97
           + L  S     ++QA++ IG  +     ++
Sbjct: 76  EALASSMGASQMSQAANLIGHAVLVPGNAV 105


>gi|84514834|ref|ZP_01002197.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
 gi|84510993|gb|EAQ07447.1| Flagellar scaffolding protein FlgD [Loktanella vestfoldensis SKA53]
          Length = 233

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +++  +  +   +  K+ LGQ  FLKL+  Q+++QDP  PM   + +AQ+A FS +    
Sbjct: 16  SKLGISTTQDKNAVPKEELGQTDFLKLMTAQLQNQDPFAPMDNGDFIAQMAQFSSVAGIS 75

Query: 65  QMNSTLQELLKSN---NLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTA 113
           +M+ T+  +        +A + +Y+G ++            G I G +   + S      
Sbjct: 76  KMSETMSGIADQMGQFRVASSVNYLGHSVMIPGNLARADDNGEIHGAIELERASVDTRIE 135

Query: 114 ITV 116
              
Sbjct: 136 FLD 138


>gi|68164547|gb|AAY87276.1| predicted flagellar hook capping protein [uncultured bacterium
           BAC17H8]
          Length = 231

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           +   ++E +   SK TLGQ  FLKL+ TQ+++QDP  PM+ +E +AQ+A FS +    +M
Sbjct: 19  LGVPKKEDTARGSKDTLGQSDFLKLMTTQLQNQDPFAPMENAEFIAQMAQFSTVTGITEM 78

Query: 67  NSTLQELLKS---NNLAQASSYIGKNITNAD--------GSISGVVNAIQVSS 108
            + L+ + +      +A A++ +G ++            G I G++     S 
Sbjct: 79  GTELKAIAEQLGEFRIATAANLLGSSVMVPGNYARADDNGEIHGMIELPSASG 131


>gi|49082024|gb|AAT50412.1| PA1079 [synthetic construct]
          Length = 238

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           +   +     K    LG+D FLKLL+ Q+K+QDP  P +  E +AQLA FS +E    +N
Sbjct: 25  SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84

Query: 68  STLQELL---KSNNLAQASSYIGKNITNADGS 96
            +++ +L   +S+   QASS +G+ +  A   
Sbjct: 85  KSMESILSNYQSSQALQASSLVGRKVIVATDK 116


>gi|317154734|ref|YP_004122782.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944985|gb|ADU64036.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 247

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +   SK +LGQ  FL LL+ Q+ HQDP  PM+ ++  +QLA FS +EQ  ++N  +Q
Sbjct: 19  AASNTPTSKASLGQADFLTLLVAQLTHQDPLNPMQDTDMTSQLAQFSSLEQLTKINDGVQ 78

Query: 72  EL---LKSNNLAQASSYIGKNITNADGSIS 98
            L   +  ++L  A+SYIGK+I      IS
Sbjct: 79  SLNTVMGKSDLLSAASYIGKDIKAEGYKIS 108


>gi|254499107|ref|ZP_05111797.1| Putative flagellar hook capping protein [Legionella drancourtii
           LLAP12]
 gi|254351646|gb|EET10491.1| Putative flagellar hook capping protein [Legionella drancourtii
           LLAP12]
          Length = 123

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           ++  +   +GQ  ++K+ + ++ +QDP +P+   E +AQ+A FS ++Q+   N  L +L+
Sbjct: 2   TEPVNGVDVGQADYMKVFMQELTYQDPLKPIDNREFMAQMAQFSTLQQASASNENLMKLI 61

Query: 75  KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV---DNTE--IPITTGIRI 129
           + +   +  S +G ++        G+V AI+ +   +  + +   +  E  + +     +
Sbjct: 62  QLHYGNRGLSLLGHSVKITGEEGYGLVEAIRFTEEQMPEVRIQRENGGEPWVDVNHIYEV 121


>gi|332703534|ref|ZP_08423622.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553683|gb|EGJ50727.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 236

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
            I    +      S  KSK   L Q  FL LL+ Q++HQDP  PM+  +  AQLA FS +
Sbjct: 6   NITGSSSAIDPYASTPKSKSGALDQSTFLNLLMAQLQHQDPLNPMEDKDFTAQLAQFSSL 65

Query: 61  EQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVS 107
           EQ  ++N  ++ L  S    ++  A S+IGK+I     ++S    +I  +
Sbjct: 66  EQLNKINEGIEGLNSSAGRQDMLGAVSFIGKDIRAFGNTVSKEGTSITKA 115


>gi|90411004|ref|ZP_01219018.1| flagellar basal body rod modification protein [Photobacterium
           profundum 3TCK]
 gi|90328217|gb|EAS44528.1| flagellar basal body rod modification protein [Photobacterium
           profundum 3TCK]
          Length = 238

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q+  SK   +  L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   QMN   
Sbjct: 27  QETQSKVTGQNELKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINQMNEQF 86

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAI 114
             L   + S+   QASS +G+++            G I+G+V   Q     +  I
Sbjct: 87  GSLNSAMTSSQALQASSLVGRDVLIPGATGVKNAEGGITGMVKLPQALDNMMVRI 141


>gi|260432283|ref|ZP_05786254.1| flagellar basal body rod modification protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416111|gb|EEX09370.1| flagellar basal body rod modification protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 221

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
            Q    K  S      + FLK+L  Q ++QDP EP+ +SE  AQLA FS +EQ VQ N  
Sbjct: 15  NQSATQKKTSGLASDFETFLKMLTAQARNQDPLEPLDSSEYAAQLAQFSMVEQQVQTNEL 74

Query: 70  LQEL---LKSNNLAQASSYIGKNITNAD 94
           L  L   L + NL + +++IGK++  + 
Sbjct: 75  LDGLAGTLSAANLTEMAAWIGKDVRVSS 102


>gi|182412239|ref|YP_001817305.1| flagellar hook capping protein [Opitutus terrae PB90-1]
 gi|177839453|gb|ACB73705.1| flagellar hook capping protein [Opitutus terrae PB90-1]
          Length = 155

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 4/123 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                + +  K TL Q+ FLKLL  Q + QDP  PM+ +E +AQ+A F+ ++QS  + + 
Sbjct: 20  NSGTNTPAPKKTTLDQNDFLKLLTVQFQQQDPMSPMEDTEFIAQMAQFTALDQSKALLTQ 79

Query: 70  LQELLKSNNLAQASSYIGKNITNADG---SISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
           +++     + A A+SYIG+ +T AD    + +GVV+ ++++  G   + V +    ++  
Sbjct: 80  MKQFSTMQDAATANSYIGRQVTFADENGATATGVVSGVEIT-DGAPRLVVGDLTYALSAV 138

Query: 127 IRI 129
             +
Sbjct: 139 RLV 141


>gi|83646775|ref|YP_435210.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
 gi|83634818|gb|ABC30785.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
          Length = 136

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
            + T+G + FL++ +TQ+  QDP EP+   E +AQLA FS +E + + N  ++ LL   +
Sbjct: 17  KQNTVGIEDFLQIFLTQLTFQDPLEPVDNREFIAQLAQFSSLETATRTNENIEGLLDVQS 76

Query: 79  LAQASSYIGKNITNAD--GSISGVVNAIQVSST--GLTAITVDNTEI 121
           +AQ    IGK +   D  G   G V+ I  ++    +T +  D T I
Sbjct: 77  VAQTVGLIGKTVQVNDDQGFAVGKVSTITFNNGKPEITLVQEDGTPI 123


>gi|56698286|ref|YP_168659.1| flagellar basal body rod modification protein [Ruegeria pomeroyi
           DSS-3]
 gi|56680023|gb|AAV96689.1| basal-body rod modification protein FlgD [Ruegeria pomeroyi DSS-3]
          Length = 222

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +   Q  +  K   +   D F+++L TQ K+Q+P EP+ +SE  AQLA FS +EQ  
Sbjct: 11  GATSQAPQTTTPEKRSLSSDFDTFIRMLTTQAKYQNPLEPLDSSEYAAQLAQFSMVEQQT 70

Query: 65  QMNSTLQELLK---SNNLAQASSYIGKNITN 92
           + N TL  L++   + ++A+ S++IGK +  
Sbjct: 71  KTNDTLTALVEKLGATDMAKLSNWIGKEVRA 101


>gi|168186124|ref|ZP_02620759.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
           Eklund]
 gi|169295774|gb|EDS77907.1| flagellar hook assembly protein FlgD [Clostridium botulinum C str.
           Eklund]
          Length = 274

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   + T++     K    + ++AFLK+L  ++ +QDP     +++ ++QLA FS +EQ
Sbjct: 44  VNHYNSATRRGTKIVKKGNEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 103

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
              +NST+       +   A S +GK +  +     G     +     +T +  D  +I 
Sbjct: 104 MANLNSTM-------SFNSAGSMVGKTVAMSSYDDYG-----RQYGGTVTNVRKDGDDII 151

Query: 123 IT 124
           + 
Sbjct: 152 LN 153


>gi|134095098|ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas
           arsenicoxydans]
 gi|133739001|emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas
           arsenicoxydans]
          Length = 225

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               +  KS     QD FL LL+TQ+K+QDP  P+  ++  +QLA  S +    ++N TL
Sbjct: 20  NGTSAAKKSTAEEAQDRFLTLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVTGIDKLNGTL 79

Query: 71  QELL---KSNNLAQASSYIGKNITNADGSIS 98
           + ++   +SN   QA++ IG  +     +IS
Sbjct: 80  ESMMGSYQSNQALQAANMIGHGVLAPGSNIS 110


>gi|217077694|ref|YP_002335412.1| basal-body rod modification protein FlgD [Thermosipho africanus
           TCF52B]
 gi|217037549|gb|ACJ76071.1| basal-body rod modification protein FlgD [Thermosipho africanus
           TCF52B]
          Length = 222

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 11/124 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                K + KK L ++AFL+LL+TQ+K+QDP EP+K  E +AQ+   S +EQ   M+ ++
Sbjct: 14  STNSKKQEIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSESV 73

Query: 71  QELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
           Q+ ++S+      QASS +GK               +   S G T+  V   E P    +
Sbjct: 74  QKFVESSASLYRAQASSMVGKYAVVKSN--------VLELSNGTTSTQVFKLESPSHVIL 125

Query: 128 RISN 131
           +I +
Sbjct: 126 KIYD 129


>gi|295706278|ref|YP_003599353.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
 gi|294803937|gb|ADF41003.1| flagellar hook assembly protein [Bacillus megaterium DSM 319]
          Length = 142

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 8/136 (5%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +      +    K     +LG+D FLKLLI Q+++QDP  PM+  + +AQ+A FS +EQ 
Sbjct: 7   SDLYLSNRDTPVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQM 66

Query: 64  VQMNSTLQELLKSNNL---AQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117
             M+++L   L  +      + S  IGK             GV+    V +  ++    D
Sbjct: 67  TNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVILTASVKNNEVSFGIND 126

Query: 118 N--TEIPITTGIRISN 131
              T + +   + +S+
Sbjct: 127 ENHTVLSLNDILEVSS 142


>gi|149203159|ref|ZP_01880130.1| Possible FlgD protein [Roseovarius sp. TM1035]
 gi|149143705|gb|EDM31741.1| Possible FlgD protein [Roseovarius sp. TM1035]
          Length = 230

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
           +  +  +   + FL+LL TQ+++QDP  P+++S+   QLA FS +EQ V  N  L +L  
Sbjct: 29  RPATGFSSDFETFLRLLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLTNDLLTDLGA 88

Query: 74  -LKSNNLAQASSYIGKNITNAD------------GSISGVVNAIQVSSTGLTAITVDNTE 120
            L +  L+Q S +IG                    ++    +A ++ ++    I V+   
Sbjct: 89  RLGAQGLSQVSGWIGMEALATGPVAFSGQPISLIATVESQADAAEIVASDARGIIVNRQT 148

Query: 121 IPITTGIRI 129
           IP  +G  +
Sbjct: 149 IPARSGPVV 157


>gi|146307870|ref|YP_001188335.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina ymp]
 gi|145576071|gb|ABP85603.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
          Length = 221

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            + V    +    ++  K LG++ FL LL+ Q+ +Q+P EP    E +AQLA FS +E  
Sbjct: 7   TSSVLDQYEMKQNTRQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSSLEGI 66

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAI 114
            ++N +++ +L   +S+   QASS +G+ +         D S S   +A+   S+G   +
Sbjct: 67  EKLNKSMESMLSSYQSSQALQASSLVGRKVIVPTERAVVDTSESFKASAVLPVSSGNVYV 126

Query: 115 TVDNTEIPITTGI 127
            V ++   + T I
Sbjct: 127 NVYDSAGSVVTRI 139


>gi|163793270|ref|ZP_02187245.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
 gi|159181072|gb|EDP65587.1| Flagellar hook capping protein [alpha proteobacterium BAL199]
          Length = 222

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M+  + ++ +  + S S  K +   D FL LL TQ+K+QDP +PM  SE V QL  FS +
Sbjct: 1   MDSVSPISTSGTKSSTSADKLSKDFDMFLTLLTTQLKNQDPLDPMDNSEMVNQLVQFSNV 60

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           EQ +  N  L+++   L S + A + SYIG+++   D + 
Sbjct: 61  EQQIAQNKNLEQMILLLNSQSAASSVSYIGRDVQFTDSTT 100


>gi|42528269|ref|NP_973367.1| flagellar basal body rod modification protein [Treponema denticola
           ATCC 35405]
 gi|4580017|gb|AAD24205.1|AF049342_3 flagellar hook assembly protein FlgD [Treponema denticola ATCC
           33520]
 gi|4426942|gb|AAD20616.1| flagellar hook assembly scaffolding protein FlgD [Treponema
           denticola]
 gi|41819539|gb|AAS13286.1| flagellar hook assembly scaffolding protein [Treponema denticola
           ATCC 35405]
 gi|325474541|gb|EGC77727.1| flagellar hook assembly protein FlgD [Treponema denticola F0402]
          Length = 169

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
             Q        K+ LG+D FL+LLI Q+ HQDPT PM+ ++ + Q+A FS +EQ   MN 
Sbjct: 44  NKQNFAETRVPKQQLGKDDFLQLLIAQLTHQDPTSPMEDTQFIGQMAQFSSLEQMTNMNK 103

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
               L +    + A + +GK +    GS  +SG ++A          + V+      +  
Sbjct: 104 NFAALNELMTGSSAVNAVGKKVDLDLGSSQVSGYISAATRGIN--PEVMVNGNWYNWSAV 161

Query: 127 IRIS 130
             + 
Sbjct: 162 KTVY 165


>gi|152965623|ref|YP_001361407.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
 gi|151360140|gb|ABS03143.1| flagellar hook capping protein [Kineococcus radiotolerans SRS30216]
          Length = 175

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 9/135 (6%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N T    S + +K    +D FLKLL+ Q+K+QDP++P   ++ +AQ A FS +E   +
Sbjct: 30  NANKTDTSASAAVAKTKTDKDTFLKLLVAQLKYQDPSKPADTTQFMAQTAQFSALETMQE 89

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSS------TGLTAITV 116
           + ++   +L + N  QAS+ IG+ ++         SGVV +   +        G   + V
Sbjct: 90  VAASSGSMLAAQNKLQASTLIGQIVSYTGEDGTAKSGVVKSASFTQGSAGGTNGEPVLNV 149

Query: 117 DNTEIPITTGIRISN 131
           D T + ++    I  
Sbjct: 150 DGTSVVLSRVSGIGE 164


>gi|296123338|ref|YP_003631116.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
 gi|296015678|gb|ADG68917.1| flagellar hook capping protein [Planctomyces limnophilus DSM 3776]
          Length = 139

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
             L  +AF+KLLITQ+++QDP+ PM   E ++Q++    +   +++   L+ L  S  L 
Sbjct: 25  NALDTEAFMKLLITQLQNQDPSNPMSNEELLSQISQMRNLTSDIELTDALEGLTLSQQLN 84

Query: 81  QASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            +++++GK I   T     +SGVV+ + V     + + V + E+P+T    ++N
Sbjct: 85  SSTAFLGKEIKGTTANGTEVSGVVDRVYVK-DKASFLVVGDKEVPLTNVTDVTN 137


>gi|229544400|ref|ZP_04433458.1| flagellar hook capping protein [Bacillus coagulans 36D1]
 gi|229324885|gb|EEN90562.1| flagellar hook capping protein [Bacillus coagulans 36D1]
          Length = 215

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +  ++      S     KTL +DAFLK+LI Q+++QDPT+PM  ++ V+Q+A FS +
Sbjct: 7   IDPSLLLSNQNTATSTRTGSKTLDKDAFLKILIAQLQNQDPTKPMDDTQFVSQMAQFSSL 66

Query: 61  EQSVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113
           EQ   + + +  L+K +  +Q    + YIG+ ++          +  V +   + TG++ 
Sbjct: 67  EQMTNLKNDIDNLIKLSQQSQQIAYTQYIGRTVSWEKTETADDGTASVKSGTGTITGISF 126

Query: 114 ITVDNTEIPITTGIRISN 131
              +     +  G +IS+
Sbjct: 127 GDDNAVTFTLDDGTKISS 144


>gi|187478184|ref|YP_786208.1| flagellar basal body rod modification protein [Bordetella avium
           197N]
 gi|115422770|emb|CAJ49298.1| basal-body rod modification protein [Bordetella avium 197N]
          Length = 230

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T    T +  + S +     QD FLKLL+TQ+K+QDP  PM+ +E  +QLA  S +E   
Sbjct: 7   TSNAKTPEVGNASANAAKSIQDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 66

Query: 65  QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
            +N TL  +      +    A++ IGK +      +S
Sbjct: 67  NLNKTLLSISGQIDVSQSMNAAALIGKAVLVPGDKVS 103


>gi|152989628|ref|YP_001349651.1| flagellar basal body rod modification protein [Pseudomonas
           aeruginosa PA7]
 gi|150964786|gb|ABR86811.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa PA7]
          Length = 227

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 2   EINTEVNPTQQEFSKS----KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
            +N+    +    +++    K    LG+D FLKLL+ Q+K+QDP  P +  E +AQLA F
Sbjct: 5   NVNSTNRASGSGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQF 64

Query: 58  SQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96
           S +E    +N +++ +L   +S+   QASS +G+ +  A   
Sbjct: 65  STVEGVQSLNKSMESILSNYQSSQALQASSLVGRKVIVATDK 106


>gi|150021172|ref|YP_001306526.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
 gi|149793693|gb|ABR31141.1| flagellar hook capping protein [Thermosipho melanesiensis BI429]
          Length = 221

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                  ++  KK L ++AFL+LL+TQ+K+QDP EP+K  E +AQ+   S +EQ   M+ 
Sbjct: 11  YPTNVTRENGIKKELDKEAFLELLVTQLKNQDPLEPLKDREFIAQMTQLSTLEQITNMSE 70

Query: 69  TLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
           ++Q+ ++S+      Q SS +GK               I     G  +  V   E P   
Sbjct: 71  SVQKFVESSASLYRAQVSSMVGKYAVVKSN--------ILELKNGNASTQVFKLEEPSHV 122

Query: 126 GIRISN 131
            ++I +
Sbjct: 123 ILKIYD 128


>gi|91204390|emb|CAJ70890.1| similar to flagellar hook assembly protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 137

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 11/121 (9%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL------ 73
              +  D+FL L  TQ+++QDP +P   SE ++QLA F+ +EQ+ Q    L +L      
Sbjct: 10  GSEITTDSFLTLFTTQMRYQDPLDPQDNSEFLSQLAQFTTLEQTSQQTEYLADLSSLDTA 69

Query: 74  -LKSNNLAQASSYIGKNITNAD----GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
            L+ + +  AS +IGK IT +D    G  SGVV  +++   G  +  +D   + I+  I+
Sbjct: 70  SLQLDQIGIASGFIGKTITYSDDDGEGEYSGVVEGVKLEEDGTVSFVIDGESVSISNFIQ 129

Query: 129 I 129
           +
Sbjct: 130 V 130


>gi|292492362|ref|YP_003527801.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
 gi|291580957|gb|ADE15414.1| flagellar hook capping protein [Nitrosococcus halophilus Nc4]
          Length = 226

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
           K      LG + FLKL+ TQ+ HQDP EPM  S  + Q+A F  +     + ++ +EL  
Sbjct: 23  KKPQNTELGLEQFLKLMTTQLNHQDPFEPMDNSTFLGQMAQFGTVSGIQDLQNSFKELSG 82

Query: 74  -LKSNNLAQASSYIGKNITNADG 95
            ++SN   QAS  +G+++     
Sbjct: 83  SMQSNQALQASGLVGRSVLVPSE 105


>gi|218885351|ref|YP_002434672.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756305|gb|ACL07204.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 263

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                       L + AFL LL+ Q+ HQDP  PM   E VAQLA F+ +EQ   +++ +
Sbjct: 15  NNYLGAKTKNDELDKQAFLNLLVAQLSHQDPLNPMDDKEFVAQLAQFTSLEQLTNISTGI 74

Query: 71  QELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
            +L  S     ++ A  YIGK +T +   IS      Q  STG T  +V  + +  TT  
Sbjct: 75  TDLNASAKQQQMSAAVGYIGKEVTASGYEIS---KTSQKDSTGATVNSV--STVYFTTQE 129

Query: 128 RISN 131
           ++SN
Sbjct: 130 QVSN 133


>gi|84502383|ref|ZP_01000519.1| related to basal-body rod modification protein (FlgD) [Oceanicola
           batsensis HTCC2597]
 gi|84389195|gb|EAQ01992.1| related to basal-body rod modification protein (FlgD) [Oceanicola
           batsensis HTCC2597]
          Length = 221

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           ++I      T  +   + +   L     +FLKLL  Q+ +QDP EPM +S  V+QLA  S
Sbjct: 2   VDITGTAAATSGQTLSTVASNKLSADYQSFLKLLTAQLTNQDPLEPMDSSTFVSQLAQLS 61

Query: 59  QMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-----SGVVNAIQVSSTG 110
           Q+EQS+Q N+ L+ +   L +  L      IG+ ++            G    +  ++  
Sbjct: 62  QVEQSIQTNTHLESISGQLANAGLTSDLGLIGREVSVPGDLFDLIGGKGTFEYVLATTAN 121

Query: 111 LTAITV 116
                +
Sbjct: 122 EVRAII 127


>gi|294500932|ref|YP_003564632.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
 gi|294350869|gb|ADE71198.1| flagellar hook assembly protein [Bacillus megaterium QM B1551]
          Length = 142

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++      ++   K     +LG+D FLKLLI Q+++QDP  PM+  + +AQ+A FS +EQ
Sbjct: 6   MSDLYLSNRETQVKQTGNSSLGKDDFLKLLIAQLQNQDPMNPMQDKDFIAQMAQFSSLEQ 65

Query: 63  SVQMNSTLQELLKSNNL---AQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITV 116
              M+++L   L  +      + S  IGK             GV++   V +  ++    
Sbjct: 66  MTNMSTSLNTFLTQSQASPILKGSELIGKTAAWLDEEGNKKQGVISTASVKNNEVSFRIN 125

Query: 117 DN--TEIPITTGIRISN 131
           D   T + +   + +S+
Sbjct: 126 DENHTVLSLNDILEVSS 142


>gi|90021856|ref|YP_527683.1| flagellar basal-body rod modification protein FlgD [Saccharophagus
           degradans 2-40]
 gi|89951456|gb|ABD81471.1| flagellar hook capping protein [Saccharophagus degradans 2-40]
          Length = 238

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              ++         LGQ AFL+L+ITQ+++QDP  P + SE +AQLA FS +E   ++N+
Sbjct: 16  SIAKKNPTEPQSNELGQSAFLELMITQLENQDPLSPQENSEFIAQLAQFSSVESLDKLNN 75

Query: 69  TLQELLKS---NNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTGLTAITVD 117
                  S   N   QAS+ +G+++T         A G +S  V+    S   L  I+ +
Sbjct: 76  NFDSFANSFVANQALQASTLVGRSVTVPSDRTELKAGGVVSASVDVPSSSGDILVNISTE 135

Query: 118 NTEI 121
              +
Sbjct: 136 GGSL 139


>gi|23099017|ref|NP_692483.1| flagellar basal body rod modification protein [Oceanobacillus
           iheyensis HTE831]
 gi|22777245|dbj|BAC13518.1| flagellar hook assembly protein [Oceanobacillus iheyensis HTE831]
          Length = 172

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 12/133 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             +       + LG+D FLKLL+ Q+++QDPT+PM  S+ ++Q+A FS +EQ + M++++
Sbjct: 11  NNQQKARVPSQELGKDEFLKLLMVQLQNQDPTKPMDDSQFMSQMATFSSLEQMMNMSNSI 70

Query: 71  QELLKSNN---LAQASSYIGKNITN---------ADGSISGVVNAIQVSSTGLTAITVDN 118
           + L+ ++    + Q S  IG+ ++            G  + +V  +  +         + 
Sbjct: 71  EMLVNNSLVSPVLQYSHMIGEEVSYMTFDEETGKETGIETSIVVGVTQNEGWAVFELENG 130

Query: 119 TEIPITTGIRISN 131
             I   T I++  
Sbjct: 131 ERIYADTVIQVGE 143


>gi|310641550|ref|YP_003946308.1| flagellar hook capping protein [Paenibacillus polymyxa SC2]
 gi|309246500|gb|ADO56067.1| Flagellar hook capping protein [Paenibacillus polymyxa SC2]
          Length = 177

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            +    N    + + +K  KT+G+D FLK+LITQ+++QDP +P++  E +AQ+A FS +E
Sbjct: 12  NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107
           Q + +++ L  L    +L  AS  IGK +              T A    SG+V++I V 
Sbjct: 72  QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEPGKKDSITGETGAGTVKSGIVDSI-VI 128

Query: 108 STGLTAITVDNTEIPITTGIRIS 130
             G+    +   E+ +     +S
Sbjct: 129 RDGVQYAKMGAAEVALKDVTSVS 151


>gi|94500240|ref|ZP_01306773.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
 gi|94427539|gb|EAT12516.1| Flagellar hook capping protein [Oceanobacter sp. RED65]
          Length = 262

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +  ++  +Q+         LG++ FLKLL+TQ+ +Q+P +P + SE VAQLA FS +E  
Sbjct: 11  SQVLDQYKQKDDDKPKDNELGRNEFLKLLVTQMNNQNPLKPQENSEFVAQLAQFSSVEGL 70

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
             +N+T+  +   L+S+   QASS +G+++   +   
Sbjct: 71  ENLNTTVDSMSDGLRSSQALQASSLVGQSVIVPNQEY 107


>gi|251797438|ref|YP_003012169.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
 gi|247545064|gb|ACT02083.1| flagellar hook capping protein [Paenibacillus sp. JDR-2]
          Length = 182

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                  +   K   K  LG+DAFL+LL+TQ+K+QDP +P   +  + Q+A F+ +EQ +
Sbjct: 12  NYSTSNVKAAGKDTDKNALGKDAFLELLVTQLKNQDPLQPQDNAAFITQMAQFTSVEQLM 71

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGV-------VNAIQVSSTGLTAITVD 117
            M+  L   L + NL  ASS IGK ++  +   +G        VN+I      L A   D
Sbjct: 72  NMSDQLS--LLNQNLGTASSIIGKTVSWYELDDAGQTKLMYDAVNSIVSQDGTLYAKFAD 129

Query: 118 NTEIPITTGIRISN 131
            T I ++  + +S+
Sbjct: 130 ETMIKLSDVVTVSD 143


>gi|308273520|emb|CBX30122.1| hypothetical protein N47_D29310 [uncultured Desulfobacterium sp.]
          Length = 113

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NL 79
           +G+D FL LL+TQ+K+QDP  PM+  E  AQLA FS +EQ   MN+TL  +  S      
Sbjct: 1   MGKDEFLNLLVTQLKYQDPLNPMEGQEFSAQLAQFSSLEQLTNMNTTLTGIKDSVGEKKQ 60

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
                YIGKNI  +D   +G V  +     G+  + V   +I     + I+
Sbjct: 61  DNLLDYIGKNIKTSDDE-TGEVTGVTY-QNGIGYLMVGENKILPDNVVEIT 109


>gi|260886639|ref|ZP_05897902.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
 gi|330839529|ref|YP_004414109.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
 gi|260863782|gb|EEX78282.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
 gi|329747293|gb|AEC00650.1| flagellar hook capping protein [Selenomonas sputigena ATCC 35185]
          Length = 178

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 26/147 (17%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             +   ++   +LG+DAFL+LL+TQ++HQDP  P   ++ +AQLA FS +EQ  QM    
Sbjct: 23  ASQTKTARKNDSLGKDAFLQLLVTQLRHQDPLSPDDNTQYIAQLAQFSSLEQMTQMVKGF 82

Query: 71  QELL-------KSNNLAQASSYIGKNITN---------------ADGSISGVVNAIQVSS 108
           + +         S  +   S+ IGKNI                    + +G V  ++VS+
Sbjct: 83  ENVSKLVSNIDSSVLVGSLSNMIGKNIQWTHVTKTKDAEGNPKTKSETFAGNVRGVKVSN 142

Query: 109 TGLTAITVDNT----EIPITTGIRISN 131
                +  D      E+ ++    I++
Sbjct: 143 GKPMVVAQDAKGKLHEVEVSEIDAIAD 169


>gi|332799180|ref|YP_004460679.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
 gi|332696915|gb|AEE91372.1| flagellar hook capping protein [Tepidanaerobacter sp. Re1]
          Length = 128

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M I            +      L +D FLKLL+TQ+++QDP EPM  +E +AQLA FS +
Sbjct: 1   MSIINTDYYYTANQEQKLGTTNLDKDDFLKLLVTQLRYQDPLEPMDNNEYIAQLAQFSSL 60

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT- 119
           EQ   +N  +  L   + + + +  +          + G +  I      +  I  +   
Sbjct: 61  EQMQNLNIQMASLSAISTIGKTAKAV-----VEQNEVEGTIKGIAFDRGSVNLIISNEDS 115

Query: 120 --EIPITTGIRI 129
             ++PI     I
Sbjct: 116 EVKVPIENVAEI 127


>gi|254440284|ref|ZP_05053778.1| flagellar hook capping protein, putative [Octadecabacter
           antarcticus 307]
 gi|198255730|gb|EDY80044.1| flagellar hook capping protein, putative [Octadecabacter
           antarcticus 307]
          Length = 233

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%)

Query: 1   MEINTEVNPTQQ-----------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASE 49
           M++N+     Q            E   ++ K  LGQ  FLKL+  Q+++QDP  PM   +
Sbjct: 1   MDVNSNSQSAQNALLSKLGISTTEERNAEPKDELGQSDFLKLMTAQLQNQDPFAPMDNGD 60

Query: 50  QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
            VAQ+A FS +    +MN T+  +   +    +A + + +G ++              + 
Sbjct: 61  FVAQMAQFSSVAGISEMNQTMSSIAGQMSQFQVASSVNMLGHSVMMPGNI-------ARA 113

Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131
            + G    T+D     + T I   +
Sbjct: 114 DNNGEIQGTLDLASASLDTQIEFLD 138


>gi|15596276|ref|NP_249770.1| flagellar basal body rod modification protein [Pseudomonas
           aeruginosa PAO1]
 gi|107100524|ref|ZP_01364442.1| hypothetical protein PaerPA_01001549 [Pseudomonas aeruginosa PACS2]
 gi|218892957|ref|YP_002441826.1| flagellar basal body rod modification protein [Pseudomonas
           aeruginosa LESB58]
 gi|254234215|ref|ZP_04927538.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa C3719]
 gi|254239437|ref|ZP_04932759.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa 2192]
 gi|313106034|ref|ZP_07792293.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa 39016]
 gi|9946995|gb|AAG04468.1|AE004539_10 flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa PAO1]
 gi|126166146|gb|EAZ51657.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa C3719]
 gi|126192815|gb|EAZ56878.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa 2192]
 gi|218773185|emb|CAW28997.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa LESB58]
 gi|310878795|gb|EFQ37389.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa 39016]
          Length = 237

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           +   +     K    LG+D FLKLL+ Q+K+QDP  P +  E +AQLA FS +E    +N
Sbjct: 25  SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84

Query: 68  STLQELL---KSNNLAQASSYIGKNITNADGS 96
            +++ +L   +S+   QASS +G+ +  A   
Sbjct: 85  KSMESILSNYQSSQALQASSLVGRKVIVATDK 116


>gi|332531617|ref|ZP_08407514.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
 gi|332038980|gb|EGI75409.1| flagellar hook capping protein [Hylemonella gracilis ATCC 19624]
          Length = 237

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           IN+ VN      + S +     QD FLKLL+ QI +QDP  PM  ++  +Q+A  + +  
Sbjct: 10  INSLVNKGTTTTTSSSTDSAEMQDRFLKLLVAQISNQDPLNPMDNAQMTSQMAQINTVTG 69

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
              +N T++ L     S  + Q ++ +G+ +  AD ++S       ++     +   D  
Sbjct: 70  IENLNQTVKNLGNQFTSMQVLQGTALVGREVMVADTTLS-------INEGTRPSTAEDAE 122

Query: 120 EIPITTG 126
           E    T 
Sbjct: 123 EGDTETI 129


>gi|119714999|ref|YP_921964.1| flagellar hook capping protein [Nocardioides sp. JS614]
 gi|119535660|gb|ABL80277.1| flagellar hook capping protein [Nocardioides sp. JS614]
          Length = 163

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               T      + +  +  ++ FL L++ Q+++ DP  P  + E +AQ A F+ +E+   
Sbjct: 9   VTPSTGMYQPSTATSASDDKEMFLNLMVAQLRYHDPMNPADSGEFLAQNAQFTALEKMQD 68

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
           +      LL +     AS  +G+ +T       ++SG+V ++   + G   + VD   + 
Sbjct: 69  VADQTAALLATQISFGASGLVGRYVTYLDQDGAAVSGLVGSVTYDANG-PMLVVDGQNVT 127

Query: 123 ITTGIRIS 130
           +     ++
Sbjct: 128 LGQVQAVN 135


>gi|225375326|ref|ZP_03752547.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM
           16841]
 gi|225212815|gb|EEG95169.1| hypothetical protein ROSEINA2194_00951 [Roseburia inulinivorans DSM
           16841]
          Length = 224

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 16/124 (12%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           K K    LG D FL++L  ++++QDP EP   +E +AQLA FSQ+E  + + ST++    
Sbjct: 29  KDKKTNELGYDQFLQILCAEMQYQDPLEPTSNTEYIAQLATFSQLESQLSVQSTIE---- 84

Query: 76  SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
               + A+  +GK +        T     I+G  + + +   G T ++V++    +    
Sbjct: 85  ---ASSANDLVGKYVIMKVTSSTTGETSYIAGTCDYV-LHKNGETFLSVNDGLYNLKDLD 140

Query: 128 RISN 131
            +++
Sbjct: 141 TVAD 144


>gi|221640835|ref|YP_002527097.1| flagellar basal body rod modification protein [Rhodobacter
           sphaeroides KD131]
 gi|332559813|ref|ZP_08414135.1| FlgD2 [Rhodobacter sphaeroides WS8N]
 gi|221161616|gb|ACM02596.1| Flagellar hook capping protein [Rhodobacter sphaeroides KD131]
 gi|332277525|gb|EGJ22840.1| FlgD2 [Rhodobacter sphaeroides WS8N]
          Length = 222

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
           M +           ++S+   +  +      + FL++L TQ+++QDP  PM++ +   QL
Sbjct: 1   MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60

Query: 55  AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93
           A FS +EQ V+ N  L  +  S     L++ + +IG+     
Sbjct: 61  ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102


>gi|262276418|ref|ZP_06054227.1| flagellar basal-body rod modification protein FlgD [Grimontia
           hollisae CIP 101886]
 gi|262220226|gb|EEY71542.1| flagellar basal-body rod modification protein FlgD [Grimontia
           hollisae CIP 101886]
          Length = 248

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
              K   +  L Q+ FL LL  Q+ +QDP +P+   + +AQ+A F+ ++   +MN     
Sbjct: 31  TGEKVTGQTDLKQEDFLSLLTKQLANQDPFKPVDNEQMIAQMASFATVDGIGKMNEQFGS 90

Query: 73  L---LKSNNLAQASSYIGKNITNADGS--------ISGVVNAIQVSSTGLTAI 114
           L   + S+   QASS +G+++              I+G+V   Q  +  +  I
Sbjct: 91  LNAAMTSSQALQASSLVGQDVLVPGNEGFKSVEGGIAGMVKLPQALNDVIVRI 143


>gi|149908760|ref|ZP_01897421.1| LfgD [Moritella sp. PE36]
 gi|149808302|gb|EDM68241.1| LfgD [Moritella sp. PE36]
          Length = 218

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           IN        + S+  +   LG ++ FL++++ QIK+QDP +P+  +E V+QLA FS +E
Sbjct: 4   INNSNRTNPAQTSEVTANSALGLKNEFLQMMVAQIKNQDPLDPLDGTEYVSQLAQFSMVE 63

Query: 62  QSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
               +    S+  E+L +  + Q+++ IG  +       +G+        +G+  +    
Sbjct: 64  GVEGLRAGQSSQAEMLYTQQVLQSTALIGTTVLVPS---TGIAAKQGEKPSGVIRLDGAA 120

Query: 119 TEIPIT 124
            E+ +T
Sbjct: 121 DEVTLT 126


>gi|308068659|ref|YP_003870264.1| flagellar hook capping protein [Paenibacillus polymyxa E681]
 gi|305857938|gb|ADM69726.1| Flagellar hook capping protein [Paenibacillus polymyxa E681]
          Length = 177

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            +    N    + + +K  KT+G+D FLK+LITQ+++QDP +P++  E +AQ+A FS +E
Sbjct: 12  NVWPNYNVNNVKTASAKDTKTMGKDQFLKILITQLQNQDPMQPLEDKEFIAQMAQFSSVE 71

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNI--------------TNADGSISGVVNAIQVS 107
           Q + +++ L  L    +L  AS  IGK +              T A    SG+V++I V 
Sbjct: 72  QLMNISTQLNAL--GQSLGTASGLIGKEVSWIEAGKKDSITGETGAGAVKSGIVDSI-VI 128

Query: 108 STGLTAITVDNTEIPITTGIRIS 130
             G+    +   E+ +     +S
Sbjct: 129 RDGVQYAKMGAAEVALKDVTSVS 151


>gi|255099421|ref|ZP_05328398.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-63q42]
          Length = 202

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                T              +D F+K+L+ Q+ +QDP  P   +E V+QLA F+ +E+  
Sbjct: 39  GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98

Query: 65  QMNSTLQELLK-------SNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLT 112
            MN  L  LL        ++ L+ A+S IGK +        D +I GVV +  +    + 
Sbjct: 99  AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158

Query: 113 A-ITVDNTEIPIT 124
             + VD ++  + 
Sbjct: 159 LELEVDGSDKTVG 171


>gi|222147594|ref|YP_002548551.1| flagellar basal body rod modification protein [Agrobacterium vitis
           S4]
 gi|221734582|gb|ACM35545.1| hook formation protein [Agrobacterium vitis S4]
          Length = 151

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/109 (39%), Positives = 77/109 (70%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           +  ++FL+LLI Q+++QDPT+PM A+EQV+QLA +SQ+EQS++ N+ L+ +L++  L +A
Sbjct: 41  MDYNSFLQLLIAQLQNQDPTDPMSATEQVSQLATYSQVEQSIKTNTLLRSMLQAEALTRA 100

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
              +GK +T++DG  +GVV+ ++V+   +T  T     + + TG+  S+
Sbjct: 101 GDIVGKTVTSSDGETTGVVSNVKVADDAVTLTTSSGGTVELQTGVNFSS 149


>gi|303326941|ref|ZP_07357383.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
           3_1_syn3]
 gi|302862929|gb|EFL85861.1| basal-body rod modification protein FlgD [Desulfovibrio sp.
           3_1_syn3]
          Length = 282

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
            + N         +    + +D+F+ LL+TQ K+QDP  PM+  E +AQLA FS +EQ +
Sbjct: 9   NQTNNEFNSALSKQKGSNMDKDSFMLLLVTQFKYQDPLNPMEDKEFIAQLAQFSSLEQLM 68

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            +N++++ L     +  +  A+SYIGKN++ +  +I
Sbjct: 69  NLNTSMEGLTDATNNQQMINATSYIGKNVSVSGNAI 104


>gi|116049008|ref|YP_792190.1| flagellar basal body rod modification protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|296390557|ref|ZP_06880032.1| flagellar basal body rod modification protein [Pseudomonas
           aeruginosa PAb1]
 gi|115584229|gb|ABJ10244.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 237

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           +   +     K    LG+D FLKLL+ Q+K+QDP  P +  E +AQLA FS +E    +N
Sbjct: 25  SGATETGQSVKGSSNLGKDEFLKLLVAQLKNQDPMSPQQNGEFIAQLAQFSTVEGVQSLN 84

Query: 68  STLQELL---KSNNLAQASSYIGKNITNADGS 96
            +++ +L   +S+   QASS +G+ +  A   
Sbjct: 85  KSMESILSNYQSSQALQASSLVGRKVIVATDK 116


>gi|124516304|gb|EAY57812.1| probable flagellar hook capping protein FlgD [Leptospirillum
           rubarum]
          Length = 276

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
               ++ LG   FL L+I+Q+++QDP  P+  +   AQLA FSQ++Q   +N  +  +  
Sbjct: 26  APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85

Query: 75  --KSNNLAQASSYIGKNITNADGSI----SGVVN 102
                N      ++G+ +T    +     SG V+
Sbjct: 86  DGADANKMMMVGFLGQRVTMKGNAFRLAPSGNVS 119


>gi|326204619|ref|ZP_08194475.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782]
 gi|325985186|gb|EGD46026.1| flagellar hook capping protein [Clostridium papyrosolvens DSM 2782]
          Length = 286

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 16/132 (12%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
              +Q  +  K+   LG++ FL LL+TQ+++QDP +P+   E +AQ+A FS +EQ   MN
Sbjct: 20  TKNKQAAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQNMN 79

Query: 68  STLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
            ++ +       +QA + IGK IT            S+ G V ++++   G T + V+N 
Sbjct: 80  GSMTK-------SQAFTLIGKVITATTTDDKTLEVNSVQGTVTSVKMK-DGKTFVVVNNK 131

Query: 120 EIPITTGIRISN 131
           ++ +    ++ +
Sbjct: 132 DVDVDRITQVDD 143


>gi|192361923|ref|YP_001982401.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
           japonicus Ueda107]
 gi|190688088|gb|ACE85766.1| flagellar basal-body rod modification protein FlgD [Cellvibrio
           japonicus Ueda107]
          Length = 231

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              +     ++   LGQ AFL+L+I Q+ +Q+P  P   +E VAQLA FS +E   ++N 
Sbjct: 15  SITKRQETKRNSNELGQAAFLELMIAQMNNQNPLSPQDNTEFVAQLAQFSSVEGLERLNK 74

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
           +    + SNN  QASS +G++++      +       + S G+ A +V        T +R
Sbjct: 75  SFNSFM-SNNALQASSLVGRSVSVESDKST-------LYSGGIVAGSVTLDYATTDTQMR 126

Query: 129 ISN 131
           I +
Sbjct: 127 IYD 129


>gi|304316901|ref|YP_003852046.1| flagellar hook capping protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778403|gb|ADL68962.1| flagellar hook capping protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 135

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 14/134 (10%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+ +N        +     LG++ +L+LL+TQ+++QDP  PM   E +AQ+A FS +EQ 
Sbjct: 9   NSYINTYTDGTKVTNPNSELGKNEYLQLLVTQLENQDPLNPMDDKEFIAQMAQFSALEQM 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITN------ADGSISGVVNAIQVSSTGLTAITVD 117
           + +N++        N  +A S +GK I+       +  +I+G V+A++        + V 
Sbjct: 69  LNLNNSF-------NAVKAYSLLGKTISANIDSNGSSSTITGKVDAVKF-DGSNYYLEVQ 120

Query: 118 NTEIPITTGIRISN 131
            + + + +   +S+
Sbjct: 121 GSNVSLDSVTSVSD 134


>gi|77464914|ref|YP_354418.1| flagellar basal body rod modification protein [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389332|gb|ABA80517.1| Possible FlgD protein [Rhodobacter sphaeroides 2.4.1]
          Length = 222

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
           M +           ++S+ + +  +      + FL++L TQ+++QDP  PM++ +   QL
Sbjct: 1   MNVTGTETSAGSSTTRSRGEASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60

Query: 55  AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93
           A FS +EQ V+ N  L  +  S     L++ + +IG+     
Sbjct: 61  ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102


>gi|126460783|ref|YP_001041897.1| flagellar basal body rod modification protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126102447|gb|ABN75125.1| flagellar hook capping protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 222

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQ------DAFLKLLITQIKHQDPTEPMKASEQVAQL 54
           M +           ++S+   +  +      + FL++L TQ+++QDP  PM++ +   QL
Sbjct: 1   MNVTGTETSAGSSTTRSRGDASADKAVTSDYETFLRMLTTQLQNQDPMNPMESDDFAMQL 60

Query: 55  AVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNA 93
           A FS +EQ V+ N  L  +  S     L++ + +IG+     
Sbjct: 61  ATFSGVEQQVKTNEILTGMGASIGVMGLSELAGWIGREAEVE 102


>gi|171320707|ref|ZP_02909720.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
 gi|171094034|gb|EDT39132.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
          Length = 135

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
               +      L   + L++++TQ+ +QDP +P+   E V+QLA F+ +EQS Q+ + + 
Sbjct: 10  AGNGRQADPSGLDLQSLLRIIVTQLTYQDPLKPVDNYEFVSQLAQFTSLEQSRQIAAKID 69

Query: 72  ELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAIT--VDNTEIPITTGI 127
           +LL   +  Q    +G+ +      G+++G+V  +              +   +   T  
Sbjct: 70  DLLSVQSATQTIGLLGRKVDIRGDAGTMTGIVKGVSFKDGEPKLTIESENGQFLADATVS 129

Query: 128 RI 129
           +I
Sbjct: 130 QI 131


>gi|313901444|ref|ZP_07834902.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313468294|gb|EFR63750.1| flagellar hook capping protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 154

 Score = 83.9 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           S       L  DAF +LL  Q+++QDP +PM+ +  VAQLA  +Q+E++  + + L  L 
Sbjct: 27  SGPGGPGGLAPDAFFRLLAAQLRYQDPLQPMQDTAFVAQLAQLTQLEETRALRAALSGL- 85

Query: 75  KSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
                  A   +G+ +  T A G+ +G V  +++       + +D   +     
Sbjct: 86  ------SALPLLGRTVEITTAQGTRTGTVTGVRMDP-AAPGLMIDGRPVAWADV 132


>gi|83816116|ref|YP_446707.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
           13855]
 gi|294508643|ref|YP_003572702.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
 gi|83757510|gb|ABC45623.1| basal-body rod modification protein FlgD [Salinibacter ruber DSM
           13855]
 gi|294344972|emb|CBH25750.1| Basal-body rod modification protein flgD [Salinibacter ruber M8]
          Length = 260

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 14/123 (11%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--- 72
              +   LG++ FLKLL TQ+++QDP+ PMK  +  AQLA FS +EQ   ++  ++E   
Sbjct: 54  SQATSANLGKNDFLKLLTTQLQNQDPSNPMKGKDFAAQLAQFSSVEQLTNISGQIEEQGK 113

Query: 73  ----LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
               L +S N + A+  IG+ +  +  ++       Q +  G     VD         + 
Sbjct: 114 SDGALAQSINDSMATDLIGRTVKTSGNTL-------QWTGEGEATFGVDLERPASEATVT 166

Query: 129 ISN 131
           I +
Sbjct: 167 IRD 169


>gi|206603147|gb|EDZ39627.1| Probable flagellar hook capping protein FlgD [Leptospirillum sp.
           Group II '5-way CG']
          Length = 276

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL- 74
               ++ LG   FL L+I+Q+++QDP  P+  +   AQLA FSQ++Q   +N  +  +  
Sbjct: 26  APPPRQKLGMGDFLHLMISQLQYQDPLHPLNNTRFAAQLAQFSQLDQLTHLNRGVGTIAH 85

Query: 75  --KSNNLAQASSYIGKNITNADGSI----SGVVN 102
                N      ++G+ +T    +     SG V+
Sbjct: 86  DGADANKMMMVGFLGQRVTMKGNAFRLDPSGNVS 119


>gi|218778869|ref|YP_002430187.1| flagellar hook capping protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760253|gb|ACL02719.1| Flagellar basal body rod modification protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 230

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   +         +   +   LGQ+ FL+LLI Q+K+QDP  PM+ ++  AQLA FS +
Sbjct: 5   INTWSVGAGAYSNPTTESTGTGLGQEDFLQLLIAQLKNQDPLNPMEGTDFTAQLAQFSSL 64

Query: 61  EQSVQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98
           EQ   +  +L+E+L   +          +GK I   D S++
Sbjct: 65  EQLFGIGDSLEEMLSIQSNNGTGDVGYLLGKVIVAEDDSLT 105


>gi|209547951|ref|YP_002279868.1| flagellar basal body rod modification protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533707|gb|ACI53642.1| flagellar hook capping protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 147

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/128 (42%), Positives = 88/128 (68%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +     T    + ++ K TL  D FL+LLI Q+K+QDPT+P+ ASEQ++QLA FSQ+EQ+
Sbjct: 8   SVTSAGTTSTTNSAQQKATLNYDNFLQLLIAQMKNQDPTDPVDASEQMSQLASFSQVEQT 67

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
           +Q N+ L  LL S++L QASSY+GK + +ADG++ G + +++V S G+ A T +  +I +
Sbjct: 68  IQTNTKLDTLLSSSSLTQASSYVGKYMESADGTVKGTIESVKVYSDGIIATTTNGGKILV 127

Query: 124 TTGIRISN 131
             GI +++
Sbjct: 128 QAGITVAD 135


>gi|220929461|ref|YP_002506370.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
 gi|219999789|gb|ACL76390.1| flagellar hook capping protein [Clostridium cellulolyticum H10]
          Length = 285

 Score = 83.9 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 16/134 (11%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
           E   ++QE +  K+   LG++ FL LL+TQ+++QDP +P+   E +AQ+A FS +EQ   
Sbjct: 18  ESTKSKQEAAARKTGGELGKNDFLNLLVTQLRYQDPLQPVDDKEFIAQMAQFSSLEQMQN 77

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVD 117
           MN ++ +       +QA + IGK IT            S+ G V ++++   G T + V+
Sbjct: 78  MNGSMTK-------SQAFNLIGKVITATTTDDKTLEVNSVQGTVTSVKMKE-GKTFVVVN 129

Query: 118 NTEIPITTGIRISN 131
           N ++ + +  ++ +
Sbjct: 130 NKDVDVDSITQVDD 143


>gi|297569154|ref|YP_003690498.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925069|gb|ADH85879.1| flagellar hook capping protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 251

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
             Q    +     +L +  F+ L ITQ++HQDP +PM++ E  +QLA FS ME ++QM+ 
Sbjct: 15  ANQSNHPEPVGSSSLDRQDFMTLFITQLQHQDPMKPMESYEMASQLAQFSSMEATMQMSD 74

Query: 69  TLQELLK---SNNLAQASSYIGKNITNADGSI 97
            +++LL    S N  Q  S IGK I      I
Sbjct: 75  NMEKLLSYQMSQNNLQLLSLIGKTIETDGNEI 106


>gi|254516988|ref|ZP_05129046.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
 gi|219674493|gb|EED30861.1| flagellar hook capping protein [gamma proteobacterium NOR5-3]
          Length = 233

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T     K+ S + +G D FL L++ Q+++QDP++PM   + + QLA F  +    ++N+
Sbjct: 14  STPLGNEKAGSVEDMGSDDFLTLMVAQLENQDPSKPMDNMQFMGQLAQFGTVSGIQELNA 73

Query: 69  TLQEL---LKSNNLAQASSYIGKNITNADG 95
               L   L      QA++ +G+++     
Sbjct: 74  GFSGLSNALSGGQALQAAALVGRSVVTDSN 103


>gi|259417403|ref|ZP_05741322.1| flagellar basal body rod modification protein [Silicibacter sp.
           TrichCH4B]
 gi|259346309|gb|EEW58123.1| flagellar basal body rod modification protein [Silicibacter sp.
           TrichCH4B]
          Length = 231

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T           + S  T   + FL+L+ TQ K+QDP EPM +S+  AQLA FS +EQ V
Sbjct: 13  TATGGAAAGKQSATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQV 72

Query: 65  QMNSTLQELLKS---NNLAQASSYIGKNITNA 93
             N TL  +L +   +N++Q + ++GK +   
Sbjct: 73  LTNETLTSMLTALSLSNMSQLTGWVGKEVRAQ 104


>gi|218680426|ref|ZP_03528323.1| flagellar basal body rod modification protein [Rhizobium etli CIAT
           894]
          Length = 112

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 73/98 (74%)

Query: 34  TQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNA 93
            Q+K+QDPT+PMKASEQVAQLA FSQ+EQ+VQ N+ L  LL S++L QASSY+GK + +A
Sbjct: 1   AQMKNQDPTDPMKASEQVAQLATFSQVEQTVQTNTKLDTLLASSSLTQASSYVGKYMESA 60

Query: 94  DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           DG++ G + +++V S G+ A T D   I +  GI +++
Sbjct: 61  DGTVKGTIESVKVYSDGIIATTTDGGNILVQAGITVAD 98


>gi|42524756|ref|NP_970136.1| basal-body rod modification protein flgD [Bdellovibrio
           bacteriovorus HD100]
 gi|39576966|emb|CAE78195.1| basal-body rod modification protein flgD [Bdellovibrio
           bacteriovorus HD100]
          Length = 334

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           ++    +L +DAF KL++TQ+K+QDPT P+K+ E  AQLA FS +EQ   MN +L E+  
Sbjct: 61  RAVGNPSLDKDAFFKLMLTQMKNQDPTNPLKSHEMAAQLASFSSLEQMQNMNKSLDEMKN 120

Query: 76  SN---NLAQASSYIGKNITNADGSI 97
                   QA + IGK +      +
Sbjct: 121 GQKPSENFQALNLIGKAVAGDSSKV 145


>gi|77165839|ref|YP_344364.1| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
 gi|254433359|ref|ZP_05046867.1| flagellar hook capping protein, putative [Nitrosococcus oceani
           AFC27]
 gi|76884153|gb|ABA58834.1| Flagellar hook capping protein [Nitrosococcus oceani ATCC 19707]
 gi|207089692|gb|EDZ66963.1| flagellar hook capping protein, putative [Nitrosococcus oceani
           AFC27]
          Length = 226

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
           K      LG + FLKL+  Q+ +QDP EPM  S  ++Q+A F  ++    + ++ QE+  
Sbjct: 23  KKAQNTELGLEQFLKLMTAQLSNQDPFEPMDNSTFLSQVAQFGTVKGIQDLQASFQEVSG 82

Query: 74  -LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQ 105
            L+SN   QAS  +G+++          A GSI G V    
Sbjct: 83  SLQSNQALQASGLVGRSVLVPSAESSLEAGGSIRGAVELPS 123


>gi|188586024|ref|YP_001917569.1| flagellar hook capping protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350711|gb|ACB84981.1| flagellar hook capping protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 145

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 11/128 (8%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +     QQ   + +++  LGQD F+K+L TQ++HQDP +PM   E + Q+  F+Q++Q  
Sbjct: 13  SVSEGQQQNLPQLENQDDLGQDEFIKILTTQLQHQDPLDPMDDREFIVQMTSFNQLDQLQ 72

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEI 121
            +N T          +   + +G+++   +     I G V AI+    G     +D  ++
Sbjct: 73  SLNET-------QEQSSMLNLLGRHVVAENEDGEIIEGTVTAIR-DFNGSPGFEIDGKKV 124

Query: 122 PITTGIRI 129
                + I
Sbjct: 125 DFEDVVEI 132


>gi|148380614|ref|YP_001255155.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
           3502]
 gi|153930937|ref|YP_001384900.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153937540|ref|YP_001388369.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
 gi|170759186|ref|YP_001787977.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|148290098|emb|CAL84217.1| putative flagellar hook assembly protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926981|gb|ABS32481.1| flagellar hook capping protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933454|gb|ABS38953.1| flagellar hook capping protein [Clostridium botulinum A str. Hall]
 gi|169406175|gb|ACA54586.1| flagellar hook capping protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 265

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 40  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 99

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  ASS+IGK +            +G+V  +  +   +            E
Sbjct: 100 MK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEVKLSIEYAPGKVGE 152

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 153 FAMEDVLNITD 163


>gi|225159024|ref|ZP_03725334.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
 gi|224802403|gb|EEG20665.1| flagellar hook capping protein [Opitutaceae bacterium TAV2]
          Length = 144

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            +         S +    TLGQ  F KLL  Q++ QDP  P+  ++ +AQLA FS + QS
Sbjct: 9   TSATQEASASNSSTSITSTLGQADFFKLLSVQLQKQDPLNPVDDTQFLAQLAQFSALAQS 68

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITVDNTEI 121
             + + +  L     +  A+  +GK +T  +    ++G V +I   S     + + +T  
Sbjct: 69  EALVTQMGYLRADIQMQAAAGLVGKEVTVVSDGELVTGTVTSIAADSD-AVYVKIGDTYY 127

Query: 122 PITTGIRISN 131
             ++ + ++ 
Sbjct: 128 TYSSVVEVAE 137


>gi|168182739|ref|ZP_02617403.1| flagellar hook capping protein [Clostridium botulinum Bf]
 gi|237796096|ref|YP_002863648.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
 gi|182674115|gb|EDT86076.1| flagellar hook capping protein [Clostridium botulinum Bf]
 gi|229261576|gb|ACQ52609.1| flagellar hook capping protein [Clostridium botulinum Ba4 str. 657]
          Length = 265

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 16/135 (11%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   
Sbjct: 36  TATETARGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMAN 95

Query: 66  MNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN-- 118
           +NS ++       L  ASS+IGK +            +G+V  +  +   +         
Sbjct: 96  LNSMMK-------LTGASSFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEVKLSIEYAPG 148

Query: 119 --TEIPITTGIRISN 131
              E  +   + I++
Sbjct: 149 KVGEFAMEDVLNITD 163


>gi|88799020|ref|ZP_01114601.1| Flagellar hook capping protein [Reinekea sp. MED297]
 gi|88778247|gb|EAR09441.1| Flagellar hook capping protein [Reinekea sp. MED297]
          Length = 248

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 2   EINTEVN--PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
            +N+ +       +  +  S   LG+  FL+L+I ++ +QDP +P   ++ +A+LA FS 
Sbjct: 6   NVNSALGQYDIGNKKKEETSNDELGKTEFLELMIAKLNNQDPLKPQDDAQFIAELAQFST 65

Query: 60  MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116
           +E    M++  +EL     S+   QASS +G  +T    + S + +   V  +       
Sbjct: 66  VEGIQNMSAGFEELATSYKSSQALQASSLVGGAVTIDGNTSSKLRHGELVYGSAEIPSGS 125

Query: 117 DNTEIPITT 125
           DN  + I  
Sbjct: 126 DNLFLQIED 134


>gi|251778352|ref|ZP_04821272.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082667|gb|EES48557.1| flagellar hook assembly protein FlgD [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 321

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T +    SKS +   +++FLKLL  Q+ + DPT    ++  V Q+A F+ MEQ   +N 
Sbjct: 33  TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121
           T+        + + ++     I       +G++  +   + G      +  +   I    
Sbjct: 93  TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150

Query: 122 PITTGIRISN 131
            +     I +
Sbjct: 151 DVKNIQTILD 160


>gi|187934832|ref|YP_001885047.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722985|gb|ACD24206.1| flagellar hook assembly protein FlgD [Clostridium botulinum B str.
           Eklund 17B]
          Length = 321

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T +    SKS +   +++FLKLL  Q+ + DPT    ++  V Q+A F+ MEQ   +N 
Sbjct: 33  TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121
           T+        + + ++     I       +G++  +   + G      +  +   I    
Sbjct: 93  TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150

Query: 122 PITTGIRISN 131
            +     I +
Sbjct: 151 DVKNIQTILD 160


>gi|323700160|ref|ZP_08112072.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
 gi|323460092|gb|EGB15957.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
          Length = 250

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
               + ++ + +L QDAFL +L+ Q+ HQDP  PM+ +E  +QLA FS +EQ   +N   
Sbjct: 19  AASNTPTEHETSLDQDAFLSILVAQLTHQDPLNPMEDTEMTSQLAEFSSLEQLTNINDGI 78

Query: 69  -TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
            TL E +  +++  A S+IGK +             + +S    + I     E   +  +
Sbjct: 79  STLNETMSQSDILTAVSFIGKEVKAEGYK-------VSLSEGNASTIYYGFGETVSSIIM 131

Query: 128 RISN 131
            I +
Sbjct: 132 NIYD 135


>gi|188588066|ref|YP_001920208.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498347|gb|ACD51483.1| flagellar hook assembly protein FlgD [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 321

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T +    SKS +   +++FLKLL  Q+ + DPT    ++  V Q+A F+ MEQ   +N 
Sbjct: 33  TTDRGTPISKSGQEFDKNSFLKLLSAQLSNLDPTSDQDSTAYVTQMAQFAAMEQMYNLND 92

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA---ITVDNTEI---- 121
           T+        + + ++     I       +G++  +   + G      +  +   I    
Sbjct: 93  TMSTFAHQQLVGKGATM--DLINADGEYYTGIIRGVSKDNYGTYVSMEVYENGKNIYKVF 150

Query: 122 PITTGIRISN 131
            +     I +
Sbjct: 151 DVKNIQTILD 160


>gi|301631990|ref|XP_002945074.1| PREDICTED: basal-body rod modification protein flgD-like [Xenopus
           (Silurana) tropicalis]
          Length = 222

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             T      S +     QD FLKLL+ Q+ +QDP  PM  ++  +Q+A  + +    Q+N
Sbjct: 15  ATTTATKGNSTTDPKAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLN 74

Query: 68  STLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
            ++Q + +        Q +  IG+++      +     A+     G     + NT
Sbjct: 75  LSMQNMSEQFAAMQTLQGTMMIGRSVLAEGDKL-----AVDDKGNGKGYFVLGNT 124


>gi|260574415|ref|ZP_05842419.1| flagellar hook capping protein [Rhodobacter sp. SW2]
 gi|259023311|gb|EEW26603.1| flagellar hook capping protein [Rhodobacter sp. SW2]
          Length = 217

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 18 KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
          K+      + FL+++ TQ+K+QDP  P+ +++   QLA FS +EQ  + NS L+ +    
Sbjct: 21 KTAIASDFETFLRMMTTQLKNQDPMNPIDSADYAVQLATFSSVEQQAKTNSLLEAMGAQF 80

Query: 78 NLA---QASSYIGKNITNA 93
           L    Q + ++G     A
Sbjct: 81 GLMGMAQMAGWVGHEARAA 99


>gi|332525067|ref|ZP_08401247.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
 gi|332108356|gb|EGJ09580.1| flagellar hook capping protein [Rubrivivax benzoatilyticus JA2]
          Length = 213

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 3  INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
          I+          SK+    +   D FLKLL+ Q+++QDP  PM  ++  +Q+A  + +  
Sbjct: 4  IDPYAAINTPTESKNAGTASASADRFLKLLVAQMQNQDPLNPMDNAQVTSQMAQINTVTG 63

Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNAD 94
            ++N T+  L          Q +S IG+++T   
Sbjct: 64 IEKLNETVTGLNSQFLQMQAMQGASLIGRDVTVEG 98


>gi|332981438|ref|YP_004462879.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
 gi|332699116|gb|AEE96057.1| flagellar hook capping protein [Mahella australiensis 50-1 BON]
          Length = 143

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 16/139 (11%)

Query: 1   MEINT-EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           M +N+     + Q  +       L QD FLKLL  Q+++Q+P +PM     +AQ+A FS 
Sbjct: 1   MYVNSINTMSSAQASTVINKSAKLRQDDFLKLLAAQMQNQNPLDPMDDKAFIAQMAQFSS 60

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNI-------TNADGSISGVVNAIQVSSTGLT 112
           +EQ   M++ L       ++AQA + IGK +             ISG V++++  S G  
Sbjct: 61  LEQMQNMSANL-------SMAQAVAMIGKEVYATIPTERGVQQQISGTVDSVKF-SNGQA 112

Query: 113 AITVDNTEIPITTGIRISN 131
            +TV   ++P+     + +
Sbjct: 113 ILTVGAVDVPLENVTEVRD 131


>gi|307823530|ref|ZP_07653759.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
 gi|307735515|gb|EFO06363.1| flagellar hook capping protein [Methylobacter tundripaludum SV96]
          Length = 231

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           + +     T+ + + +  K +LGQD FLKL+ TQ+ HQDPT+PM+  + + Q+A F  + 
Sbjct: 9   DYSYLTATTKNDSAATTKKTSLGQDDFLKLMTTQMTHQDPTKPMENGQFITQIAQFGTVS 68

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSSTG 110
               +  +  +    + S+   QA+S +G+ ++         A G I+G +N    + + 
Sbjct: 69  GIQDLQKSFGDFAGSINSSQALQATSLVGRYVSAPGTKGVLEAGGDITGNINLTASAPSV 128

Query: 111 LTAITV 116
             A+T 
Sbjct: 129 KVAVTD 134


>gi|322806986|emb|CBZ04556.1| flagellar basal-body rod modification protein FlgD [Clostridium
           botulinum H04402 065]
          Length = 270

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 45  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 158 FAMEDVLNITD 168


>gi|168180919|ref|ZP_02615583.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
 gi|182668206|gb|EDT80185.1| flagellar hook capping protein [Clostridium botulinum NCTC 2916]
          Length = 270

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 45  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 158 FAMEDVLNITD 168


>gi|254230141|ref|ZP_04923536.1| Flagellar hook capping protein [Vibrio sp. Ex25]
 gi|262394940|ref|YP_003286794.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           Ex25]
 gi|151937334|gb|EDN56197.1| Flagellar hook capping protein [Vibrio sp. Ex25]
 gi|262338534|gb|ACY52329.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           Ex25]
          Length = 236

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +  + ++  +S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +
Sbjct: 20  SLQESNKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
           MN+  + L   + SN   QASS +G+++    
Sbjct: 80  MNTQFESLNSSMTSNQALQASSLVGRDVLVPG 111


>gi|206889592|ref|YP_002248122.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741530|gb|ACI20587.1| flagellar hook capping protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 137

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 2   EINTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           ++ T  N    T QE + +     + ++AFLKLL  Q+K+QDP  PM  +E V QLA+FS
Sbjct: 3   DVTTIFNNPLYTVQEKTTATGNSQIDKEAFLKLLTAQLKYQDPLNPMDNTEFVGQLAMFS 62

Query: 59  QMEQSVQMNSTLQELLKSN----NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAI 114
            +EQ + +N+TL++L  S      L   S+ IGK I   DG+       I V   G+  I
Sbjct: 63  ALEQVININNTLEQLANSQVYSNALMIGSTIIGKTIVTTDGT-EYKAQGIAV-EDGVLKI 120

Query: 115 TVDNTEIPITTGIRI 129
                 I +     I
Sbjct: 121 NTGEQYISMNQIKEI 135


>gi|126697825|ref|YP_001086722.1| putative basal-body rod modification protein [Clostridium difficile
           630]
 gi|115249262|emb|CAJ67075.1| Basal-body rod modification protein FlgD [Clostridium difficile]
          Length = 202

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                T              +D F+K+L+ Q+ +QDP  P   +E V+QLA F+ +E+  
Sbjct: 39  GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98

Query: 65  QMNSTLQELLK-------SNNLAQASSYIGKNITN-----ADGSISGVVNAIQVSSTGLT 112
            MN  L  LL        ++ L+ A+S IGK +        D +I GVV +  +    + 
Sbjct: 99  AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKEDENIVGVVKSTYIKDGEVH 158

Query: 113 A-ITVDNTEIPIT 124
             + VD ++  + 
Sbjct: 159 LELEVDGSDKTVG 171


>gi|331269320|ref|YP_004395812.1| flagellar hook assembly protein FlgD [Clostridium botulinum
           BKT015925]
 gi|329125870|gb|AEB75815.1| flagellar hook assembly protein FlgD [Clostridium botulinum
           BKT015925]
          Length = 275

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N     T +     K    + ++AFLK+L  ++ +QDP     +++ ++QLA FS +EQ
Sbjct: 45  VNHYNKATNRGTKIVKKGHEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSGLEQ 104

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
              +NST+       +   A S +GK +  +     G     +     +T +  D  +I 
Sbjct: 105 MANLNSTM-------SFNSAGSMVGKTLALSSYDDYG-----RQYGGTVTNVRKDGDDII 152

Query: 123 IT 124
           ++
Sbjct: 153 LS 154


>gi|260772273|ref|ZP_05881189.1| flagellar basal-body rod modification protein FlgD [Vibrio
           metschnikovii CIP 69.14]
 gi|260611412|gb|EEX36615.1| flagellar basal-body rod modification protein FlgD [Vibrio
           metschnikovii CIP 69.14]
          Length = 235

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++ +++  ++ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN   
Sbjct: 24  QKKPTETTGQQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNGQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNADG 95
           + L   + SN   QASS +G+++     
Sbjct: 84  ESLNSAMTSNQALQASSLVGRDVLVPGS 111


>gi|160901598|ref|YP_001567179.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
 gi|160359242|gb|ABX30856.1| flagellar hook capping protein [Petrotoga mobilis SJ95]
          Length = 220

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 7/127 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           + +++    T       + KK L ++AFL+LL+T++++QDPT+PM+  + VAQL+  S  
Sbjct: 5   VSMDSIYQSTYDAKKDREIKKELDKEAFLELLVTELQNQDPTQPMENKDLVAQLSQLSST 64

Query: 61  EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           EQ   M+  +QE++ S    N  QA+S IGK +   D +I    +     + GL     +
Sbjct: 65  EQITNMSQAIQEMVNSQMSLNKLQAASLIGKTVVVNDNTI----DLQSGVAEGLNYGLDN 120

Query: 118 NTEIPIT 124
            +++ + 
Sbjct: 121 GSQVYLE 127


>gi|91225872|ref|ZP_01260841.1| flagellar basal-body rod modification protein D [Vibrio
           alginolyticus 12G01]
 gi|269965425|ref|ZP_06179544.1| flagellar basal body rod modification protein [Vibrio alginolyticus
           40B]
 gi|91189522|gb|EAS75798.1| flagellar basal-body rod modification protein D [Vibrio
           alginolyticus 12G01]
 gi|269829904|gb|EEZ84134.1| flagellar basal body rod modification protein [Vibrio alginolyticus
           40B]
          Length = 236

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +  + ++  +S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +
Sbjct: 20  SLQESNKKAEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGK 79

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
           MN+  + L   + SN   QASS +G+++    
Sbjct: 80  MNTQFESLNSSMTSNQALQASSLVGRDVLVPG 111


>gi|238919258|ref|YP_002932773.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
           93-146]
 gi|238868827|gb|ACR68538.1| basal-body rod modification protein FlgD [Edwardsiella ictaluri
           93-146]
          Length = 244

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ ++ VN   +    + + K L Q++FL LL+ Q+++QDPT P+K +E   QLA  S +
Sbjct: 11  VDTSSPVNANSKTGLVADNGKDL-QNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTV 69

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
               ++N+TL  +   + SN   QA+S IG  +     +I  +V   +    G  + T  
Sbjct: 70  SGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTI--LVG--KEKDGGPVSTTPF 125

Query: 118 NTEIPITT---GIRISN 131
             E+        + IS+
Sbjct: 126 GFELESGAQSVVVTISD 142


>gi|255305279|ref|ZP_05349451.1| putative basal-body rod modification protein [Clostridium difficile
           ATCC 43255]
          Length = 202

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                T              +D F+K+L+ Q+ +QDP  P   +E V+QLA F+ +E+  
Sbjct: 39  GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98

Query: 65  QMNSTLQELLK-------SNNLAQASSYIGKNITNAD-----GSISGVVNAIQVSSTGLT 112
            MN  L  LL        ++ L+ A+S IGK +  +       +I GVV +  +    + 
Sbjct: 99  AMNEKLDVLLALSNSTLINSALSMATSLIGKEVEVSGEEKENENIVGVVKSTYIKDGEVH 158

Query: 113 A-ITVDNTEIPIT 124
             + VD ++  + 
Sbjct: 159 LELEVDGSDKTVD 171


>gi|303248691|ref|ZP_07334945.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
 gi|302489947|gb|EFL49873.1| flagellar hook capping protein [Desulfovibrio fructosovorans JJ]
          Length = 245

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
            + +    +      +LGQDAFL+LL+TQ+++QDP  PM   + VA+LA FS +EQ  ++
Sbjct: 10  ADTSTTSTTSKTGAASLGQDAFLQLLVTQLQYQDPLSPMDDKDFVAELAQFSSLEQLTEI 69

Query: 67  N---STLQELLKSNNLAQASSYIGKNITNADGSIS---GVVNAIQVS 107
           N     L +L   + +  A ++IGK I     ++S   G    +  +
Sbjct: 70  NTGIDKLADLNTQSQVMGAVNFIGKTIEANGEAVSLTKGKATPVTFT 116


>gi|253681624|ref|ZP_04862421.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
           1873]
 gi|253561336|gb|EES90788.1| flagellar hook assembly protein FlgD [Clostridium botulinum D str.
           1873]
          Length = 272

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N     T +     K  + + ++AFLK+L  ++ +QDP     +++ ++QLA FS +EQ
Sbjct: 42  VNHYNKATNRGTKIVKKGQEMDKNAFLKILTAELTNQDPMNAKDSTQYISQLAQFSSLEQ 101

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
              +NST+       +   AS+ +GK +  +     G     +     +T +  D  +I 
Sbjct: 102 MANLNSTM-------SFNSASNMVGKTVALSSYDEYG-----KQYGGTVTNVRKDGDDIM 149

Query: 123 IT 124
           ++
Sbjct: 150 VS 151


>gi|288962682|ref|YP_003452976.1| flagellar basal-body rod modification protein [Azospirillum sp.
           B510]
 gi|288914948|dbj|BAI76432.1| flagellar basal-body rod modification protein [Azospirillum sp.
           B510]
          Length = 232

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 16/131 (12%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK- 75
              K T+  ++FLKLL  Q+++QDP  PM A++ + QLA  S +EQS++ N TL ++L  
Sbjct: 33  EPKKATVDYESFLKLLTAQLRNQDPLAPMDATQFMTQLAQLSTVEQSMRSNDTLGKVLDT 92

Query: 76  --SNNLAQASSYIGKNITNADGSIS-------------GVVNAIQVSSTGLTAITVDNTE 120
             S+ +    + +G+ +  A   +S             G   ++++         V +T 
Sbjct: 93  LKSSGMRMDMALLGRKVEVASDQMSLAGGKAEAAYTVDGAPASVKLEVLNAAGGVVYSTP 152

Query: 121 IPITTGIRISN 131
             + TG ++ +
Sbjct: 153 GSLKTGRQVFD 163


>gi|114762150|ref|ZP_01441618.1| Possible FlgD protein [Pelagibaca bermudensis HTCC2601]
 gi|114545174|gb|EAU48177.1| Possible FlgD protein [Roseovarius sp. HTCC2601]
          Length = 224

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                 +E +K+ +  +   + FLK+L TQ+++QDP  P+ +++   QLA FS +EQ V 
Sbjct: 17  STGSAGEEQTKNAAVLSSDFETFLKMLTTQMQNQDPLNPVDSTDYATQLATFSSVEQQVL 76

Query: 66  MNSTLQELLKSN---NLAQASSYIGKNITNA 93
            N  L +L ++     L Q  S+IG+++   
Sbjct: 77  TNDLLGDLAQAMTGGTLQQLGSWIGRDVLAD 107


>gi|172057881|ref|YP_001814341.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
 gi|171990402|gb|ACB61324.1| flagellar hook capping protein [Exiguobacterium sibiricum 255-15]
          Length = 156

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N   +    + +K  S  ++ +D F+K+LI Q+ +QDPT PM+  E ++Q+A FS +EQ 
Sbjct: 7   NDASSYQLPDKTKVPSSNSMDKDMFMKILIAQLSNQDPTAPMEDKEFISQMAQFSSLEQM 66

Query: 64  VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS-----GVVNAIQVSSTGLTAIT 115
             +   ++ ++ +     L   S+ IG  ++    +++       V +    +  + ++ 
Sbjct: 67  QSIGKGIETMMLNQHAAALMNYSNLIGNKVSYESETVTKDATGADVTSTVKETANVLSVK 126

Query: 116 VDNTEI--PITTGIRIS 130
            D  +I   ++ G  +S
Sbjct: 127 RDGVDILAELSNGKSVS 143


>gi|149375035|ref|ZP_01892808.1| Flagellar hook capping protein [Marinobacter algicola DG893]
 gi|149360924|gb|EDM49375.1| Flagellar hook capping protein [Marinobacter algicola DG893]
          Length = 224

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           + +  ++  + +  ++     LG++ F++L+I Q+K+Q+P EP    E ++QLA FS +E
Sbjct: 8   DASDVLSKFRLQQEQTAKGSELGKNEFMELMIAQLKNQNPLEPQDNGEFISQLAQFSSLE 67

Query: 62  QSVQMNSTLQELLK---SNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109
           +   ++ ++ ++     S    QAS+ +G+ +          ADG ISG V+    +S 
Sbjct: 68  EMQSLSGSVDDMASQFRSTQALQASAMVGRTVLAPSSIGVLGADGEISGNVSVPATTSG 126


>gi|59712482|ref|YP_205258.1| flagellar basal body rod modification protein [Vibrio fischeri
           ES114]
 gi|197335727|ref|YP_002156701.1| flagellar basal body rod modification protein [Vibrio fischeri
           MJ11]
 gi|24459276|gb|AAL86629.1| FlgD [Vibrio fischeri ES114]
 gi|59480583|gb|AAW86370.1| flagellar hook capping protein FlgD [Vibrio fischeri ES114]
 gi|197317217|gb|ACH66664.1| flagellar basal body rod modification protein [Vibrio fischeri
           MJ11]
          Length = 236

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    +    +  K  L Q+ FL LL  Q+  QDP +P++  + +AQ+A F+ ++   +
Sbjct: 20  SLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGK 79

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
           MN+    L   + SN   QASS +G+++    
Sbjct: 80  MNTQFDSLNSSMTSNQALQASSLVGRDVLVPG 111


>gi|117928056|ref|YP_872607.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
 gi|117648519|gb|ABK52621.1| flagellar hook capping protein [Acidothermus cellulolyticus 11B]
          Length = 144

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +           S + +        FLKLL+ Q+ HQDP  P  +S  +A+ A F+ ++ 
Sbjct: 11  VTAGAAAPATPASSTATTSVFDPQTFLKLLVAQLSHQDPLNPTDSSTYIAEEAQFAMVQT 70

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNT 119
              MN  +  L      + A + IGK +T        ++GVV A    S G   + + +T
Sbjct: 71  MNTMNQLMTNLYHDMQTSSAVALIGKTVTYTASDGTPVTGVVAAAMPGSNG-PMLRIGST 129

Query: 120 EIPITTGIRISN 131
            +P++    ++ 
Sbjct: 130 TVPLSAITEVTE 141


>gi|310816816|ref|YP_003964780.1| flagellar hook capping protein, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308755551|gb|ADO43480.1| flagellar hook capping protein, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 217

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---N 78
           +   + FLK+L+ Q+++QDP  P+ ++E  AQLA FS +EQ VQ N  L +L+      N
Sbjct: 25  SSDFETFLKMLVAQVQNQDPLNPIDSNEYAAQLATFSGVEQQVQTNQLLNQLIAQTGIGN 84

Query: 79  LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           L   S +IGK++  A  + S     + +S             +  + G  +
Sbjct: 85  LGAMSGWIGKDVRVA-AAASYEGAPVTLSPNPAALADRAEVVVKSSDGTEV 134


>gi|217976245|ref|YP_002360392.1| flagellar basal body rod modification protein [Methylocella
           silvestris BL2]
 gi|217501621|gb|ACK49030.1| flagellar hook capping protein [Methylocella silvestris BL2]
          Length = 135

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 5/129 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +      +    + + +  T+  + FL+LLIT++K+QDPT P   ++ ++QLA FS +EQ
Sbjct: 9   VANATGTSANASTSAATSATVDYNQFLQLLITELKNQDPTSPTDPTQYMSQLASFSSVEQ 68

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVDNTEI 121
            V+ NS L  LL +    QA + IGK  T+ADG ISGV+ ++  S+ G +TA   + + I
Sbjct: 69  QVKTNSALDALLAT----QAGALIGKTATSADGKISGVIASVTTSAGGDVTATLKNGSAI 124

Query: 122 PITTGIRIS 130
            + +G+ IS
Sbjct: 125 TLGSGVTIS 133


>gi|85706208|ref|ZP_01037303.1| Possible FlgD protein [Roseovarius sp. 217]
 gi|85669372|gb|EAQ24238.1| Possible FlgD protein [Roseovarius sp. 217]
          Length = 230

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
              +     K+    +   + FLK+L TQ+++QDP  P+++S+   QLA FS +EQ V  
Sbjct: 20  ATTSDNSLEKATGGFSTDFETFLKMLTTQLRNQDPLNPIESSDFAVQLATFSTVEQQVLT 79

Query: 67  NSTLQEL---LKSNNLAQASSYIGKN------ITNADGSIS------GVVNAIQVSSTGL 111
           N  L +L   + +  L+Q S +IG        +T +   +S          A ++ +T  
Sbjct: 80  NDLLTDLGARIGAQGLSQVSGWIGMEALSELPVTFSGEPVSLLATVDPQAEAAEIVATNA 139

Query: 112 TAITVDNTEIPITTGI 127
             I V+   IP T+G 
Sbjct: 140 QGIIVNRQPIPTTSGQ 155


>gi|153941387|ref|YP_001391957.1| flagellar hook capping protein [Clostridium botulinum F str.
           Langeland]
 gi|152937283|gb|ABS42781.1| flagellar hook capping protein [Clostridium botulinum F str.
           Langeland]
 gi|295319976|gb|ADG00354.1| flagellar hook capping protein [Clostridium botulinum F str.
           230613]
          Length = 273

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 48  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 161 FAMEDVLNITD 171


>gi|226950069|ref|YP_002805160.1| flagellar hook capping protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843577|gb|ACO86243.1| flagellar hook capping protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 273

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 48  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 161 FAMEDVLNITD 171


>gi|170754574|ref|YP_001782273.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
 gi|169119786|gb|ACA43622.1| flagellar hook capping protein [Clostridium botulinum B1 str. Okra]
          Length = 273

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 48  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 107

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 108 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 160

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 161 FAMEDVLNITD 171


>gi|114330360|ref|YP_746582.1| flagellar basal body rod modification protein [Nitrosomonas
           eutropha C91]
 gi|114307374|gb|ABI58617.1| flagellar hook capping protein [Nitrosomonas eutropha C91]
          Length = 223

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++  +         ++      Q+ FLKLL+TQ+++QDP  PM  +E  +Q+A  S +  
Sbjct: 10  VSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69

Query: 63  SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98
             ++NSTL++L+  +      +A++ IG+++      + 
Sbjct: 70  IDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADMQ 108


>gi|163802604|ref|ZP_02196496.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
 gi|159173687|gb|EDP58506.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
          Length = 235

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++  +S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MNS  
Sbjct: 24  NKKTGESTGKQELKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ENLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|256833234|ref|YP_003161961.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
 gi|256686765|gb|ACV09658.1| flagellar hook capping protein [Jonesia denitrificans DSM 20603]
          Length = 161

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M    +             K+ +  + FL LL+TQ+K+QDP+ PM  +E +AQ    + M
Sbjct: 11  MPTTPQAGVHTTPAVTRTPKQEMDGEMFLNLLVTQLKYQDPSSPMDTTEMMAQTTQLASM 70

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVD 117
           EQ   +    QE         +++ IG+++T   +   + +G V++I+     +  + + 
Sbjct: 71  EQLTALTKVNQESFALQMRVASAALIGQDVTFTNSHGDTTTGRVDSIRY-DGEVPTVIIG 129

Query: 118 NTEIPITTGIRIS 130
           +  +P+ +   I+
Sbjct: 130 DEHVPLNSIAGIT 142


>gi|300114800|ref|YP_003761375.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
 gi|299540737|gb|ADJ29054.1| flagellar hook capping protein [Nitrosococcus watsonii C-113]
          Length = 226

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
           K      LG + FLKL+  Q+ +QDP +PM  S  ++Q+A F  ++    + ++ +E+  
Sbjct: 23  KKAQNTELGLEQFLKLMTAQLNNQDPFKPMDNSTFLSQVAQFGTVKGIQDLQTSFKEVSG 82

Query: 74  -LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQ 105
            L+SN   QAS  +G+++          A GSI G V    
Sbjct: 83  SLQSNQALQASGLVGRSVLVPSAEGSLEAGGSIRGAVELPS 123


>gi|296445191|ref|ZP_06887151.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
 gi|296257365|gb|EFH04432.1| flagellar hook capping protein [Methylosinus trichosporium OB3b]
          Length = 134

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 78/108 (72%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQA 82
           LG D FL LL+T++++QDPT P+ +++ V+QLA FS +EQ V+ N TL  +L S +L QA
Sbjct: 27  LGYDQFLTLLVTEMQNQDPTNPVDSTQTVSQLASFSAVEQQVKTNDTLTSMLASQSLTQA 86

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            S+IGK +T+ADGS+SGVV ++ + S+  TA   D + I +TTGI +S
Sbjct: 87  QSFIGKTVTSADGSVSGVVASVTIGSSSQTATLTDGSTIDLTTGITVS 134


>gi|294084419|ref|YP_003551177.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663992|gb|ADE39093.1| flagellar hook capping protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 230

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           +     +     +   LGQ+ FL L+ TQ+++QDP  PM+ ++ +AQ+A FS +     M
Sbjct: 19  LGVKSADDEAPANNDQLGQEEFLTLMTTQLQNQDPFAPMENTDMIAQMAQFSTVTGITDM 78

Query: 67  NSTLQEL---LKSNNLAQASSYIGKNITNADGS 96
           N TL  L   L    +A AS+ +G ++      
Sbjct: 79  NQTLNGLAETLAEFRIATASNMLGNSVMIPGNY 111


>gi|149178722|ref|ZP_01857305.1| probable basal-body rod modification protein FlgD [Planctomyces
           maris DSM 8797]
 gi|148842420|gb|EDL56800.1| probable basal-body rod modification protein FlgD [Planctomyces
           maris DSM 8797]
          Length = 145

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 67/112 (59%), Gaps = 4/112 (3%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
             L  ++F+KLLIT++++QDPTEP+   + +AQ++   +++ +++++ TL+E+    +L 
Sbjct: 29  NGLTAESFMKLLITELQNQDPTEPLGNEQLLAQISSMRELQSNIELSDTLKEITTGQSLT 88

Query: 81  QASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           QA++ IGK +   +G    ++GVV        G + + +   E+P++    +
Sbjct: 89  QAAALIGKEVEGQEGQQNPVAGVVERA-FVRDGKSYVGIGAFELPVSAITSV 139


>gi|317051682|ref|YP_004112798.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
 gi|316946766|gb|ADU66242.1| flagellar hook capping protein [Desulfurispirillum indicum S5]
          Length = 248

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
                   KK + +DAFL L+ITQ+++QDPT P   S+ +AQ A FSQ+EQ   M + + 
Sbjct: 19  STLKPELPKKEMDKDAFLHLMITQLRNQDPTNPQDNSQMIAQTAQFSQLEQLTNMTAAVD 78

Query: 72  ELLKSNNLA---QASSYIGKNITNADGSIS 98
            L+          A++YIG        ++ 
Sbjct: 79  RLVAMQQQTMNFNAAAYIGLEARALGNTVQ 108


>gi|89056698|ref|YP_512149.1| flagellar basal body rod modification protein [Jannaschia sp. CCS1]
 gi|88866247|gb|ABD57124.1| basal-body rod modification protein FlgD [Jannaschia sp. CCS1]
          Length = 221

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            +    T  + + + +  T   D FL+LL TQ+++QDP  P  ++E  AQLA FS +EQ 
Sbjct: 9   TSPGTATAVQDNTTAASITSDFDMFLRLLTTQMQNQDPLNPSDSTEYTAQLATFSGVEQQ 68

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNA-DGSISGVVNAIQVSST 109
           V+ N  L++L     S N+ Q S +IG         + +G    +Q++  
Sbjct: 69  VETNDLLRDLQASFASMNMGQLSGWIGMEARADMPVNFTGQPTTVQITPN 118


>gi|330502733|ref|YP_004379602.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina NK-01]
 gi|328917019|gb|AEB57850.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina NK-01]
          Length = 221

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            + V    Q    +K  K LG++ FL LL+ Q+ +Q+P EP    E +AQLA FSQ+E  
Sbjct: 7   TSSVLDQYQIKQDTKQNKDLGKNEFLNLLVAQLNNQNPLEPQGNGEFIAQLAQFSQVEGI 66

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAI 114
            ++N+++  +L   +S+   QASS +G+ +         D S S   + +   S+    +
Sbjct: 67  EKLNTSMGSMLSSFQSSQALQASSLVGRKVIVPSEKAVVDTSESLKASTVLPVSSSNVYV 126

Query: 115 TVDNTEIPITTGI 127
            V +    + T I
Sbjct: 127 NVYDNSGSLVTRI 139


>gi|323498421|ref|ZP_08103417.1| flagellar basal body rod modification protein [Vibrio sinaloensis
           DSM 21326]
 gi|323316494|gb|EGA69509.1| flagellar basal body rod modification protein [Vibrio sinaloensis
           DSM 21326]
          Length = 236

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 11/117 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + + +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 25  KNKPTETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84

Query: 71  QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           + L   + SN   QASS +G+++           DGS++ +VN  Q     +  +  
Sbjct: 85  ETLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVNLPQAVDNLMVRVED 141


>gi|260767770|ref|ZP_05876705.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
 gi|260617279|gb|EEX42463.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
 gi|315179398|gb|ADT86312.1| flagellar basal body rod modification protein D [Vibrio furnissii
           NCTC 11218]
          Length = 235

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + + +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MNS  
Sbjct: 24  KNKPTETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNADG 95
           + L   + SN   QASS +G+++     
Sbjct: 84  ENLNSSMTSNQALQASSLVGRDVLVPGS 111


>gi|187778754|ref|ZP_02995227.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
           15579]
 gi|187772379|gb|EDU36181.1| hypothetical protein CLOSPO_02349 [Clostridium sporogenes ATCC
           15579]
          Length = 279

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T +     K  + L ++AF K+L  ++ +QDPT     +E V+QLA FS +EQ   +NS 
Sbjct: 45  TDRGTRIVKKGQDLDKNAFFKILAAELANQDPTNAKDGTEYVSQLAQFSSLEQMANLNSM 104

Query: 70  LQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN----TE 120
           ++       L  AS++IGK +            +G+V  +  +   +            E
Sbjct: 105 MK-------LTGASNFIGKVVLLRRFDEQGNQYAGIVRNVIKNGDEIKLSIEYAPGKVGE 157

Query: 121 IPITTGIRISN 131
             +   + I++
Sbjct: 158 FAMEDVLNITD 168


>gi|149188065|ref|ZP_01866360.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
 gi|148838053|gb|EDL54995.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
          Length = 235

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q +  ++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QSKPEETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|209695763|ref|YP_002263693.1| flagellar basal body rod modification protein [Aliivibrio
           salmonicida LFI1238]
 gi|208009716|emb|CAQ80020.1| flagellar basal-body rod protein FlgD [Aliivibrio salmonicida
           LFI1238]
          Length = 236

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    +    +  K  L Q+ FL LL  Q+  QDP++P++  + +AQ+A F+ ++   +
Sbjct: 20  SLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGK 79

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
           MN     L   + SN   QASS +G+++    
Sbjct: 80  MNKQFDSLNTSMTSNQALQASSLVGRDVLVPG 111


>gi|262404541|ref|ZP_06081096.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           RC586]
 gi|262349573|gb|EEY98711.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           RC586]
          Length = 235

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|253990128|ref|YP_003041484.1| flagellar basal body rod modification protein [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211639035|emb|CAR67649.1| basal-body rod modification protein flgd (flagellar protein for th
           initiation of hook assembly) [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781578|emb|CAQ84741.1| basal-body rod modification protein flgd (flagellar protein for th
           initiation of hook assembly) [Photorhabdus asymbiotica]
          Length = 232

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V    Q    +K         F++LLI Q+K+QDPT PM+ +E  A LA  + +E  
Sbjct: 13  NTTVRELAQNSKTNKKNSEELNSNFMQLLIAQVKNQDPTNPMQNNELTAHLAQINMLEGI 72

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
            ++N+T+  ++    +N   Q S+ IG+ +     +I
Sbjct: 73  EKLNTTVGSIVGQINNNQSLQVSALIGRGVMIPGDTI 109


>gi|148266216|ref|YP_001232922.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
 gi|146399716|gb|ABQ28349.1| flagellar hook capping protein [Geobacter uraniireducens Rf4]
          Length = 221

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   +  N +    +  K    + +D FLKL +TQ+++QDP  P  +S+ ++QLA  +Q+
Sbjct: 2   INSVSASNDSTAAAAAMKKATGMNKDDFLKLFVTQLQNQDPMNPQDSSQFISQLAQLTQV 61

Query: 61  EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98
           EQ+   NS LQ++L   N      A S+IGK +      +S
Sbjct: 62  EQAYNTNSNLQDMLNQANNTTTLSAVSFIGKEVVAPGAQVS 102


>gi|28897551|ref|NP_797156.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839686|ref|ZP_01992353.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260364610|ref|ZP_05777212.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus K5030]
 gi|260878285|ref|ZP_05890640.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260898115|ref|ZP_05906611.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus Peru-466]
 gi|260901952|ref|ZP_05910347.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ4037]
 gi|5361007|gb|AAD42914.1|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus]
 gi|28805763|dbj|BAC59040.1| polar flagellar FlgD [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746796|gb|EDM57784.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308086108|gb|EFO35803.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308090177|gb|EFO39872.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308106778|gb|EFO44318.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308115091|gb|EFO52631.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus K5030]
 gi|328473454|gb|EGF44302.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus 10329]
          Length = 235

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++   S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  NKKAEGSTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|302874595|ref|YP_003843228.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
 gi|307690794|ref|ZP_07633240.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
 gi|302577452|gb|ADL51464.1| flagellar hook capping protein [Clostridium cellulovorans 743B]
          Length = 217

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                    +K    KT  ++ F++LL  Q+K+QDP+ P  +++ VAQ+A FS +EQ   
Sbjct: 24  VTGTKTANGTKIVDGKTTDKNMFVRLLSAQLKNQDPSNPADSTQYVAQMAQFSALEQMTN 83

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD-NTEIPIT 124
           +N+T+     S N     + + K        I+G V         +  +    + +  ++
Sbjct: 84  LNTTMT--FSSANNLVGKTVVTKYTDEKGNYITGTVAGTTQKDGNVYLLLDSADGKFTMS 141

Query: 125 TGIRI 129
             + +
Sbjct: 142 DILSV 146


>gi|148554190|ref|YP_001261772.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
 gi|148499380|gb|ABQ67634.1| flagellar hook capping protein [Sphingomonas wittichii RW1]
          Length = 226

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                  +  KS ++L Q+ FLKLL TQ++ QDP  P+  ++ VAQ+A FSQ     +MN
Sbjct: 16  AKNSSTTTTKKSNESLSQNDFLKLLTTQMQTQDPFNPVDNTQMVAQMAQFSQTTGIAEMN 75

Query: 68  STLQELLKSNNLAQA---SSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAITV 116
            +L+ +++S   ++    +++IGK            ADGS +G V     +S    ++  
Sbjct: 76  QSLKSMVQSLQQSRVADAANWIGKAALLPSKAASALADGSFAGNVTLPDAASRVDISLVD 135

Query: 117 DNTEIPIT 124
            +  +  T
Sbjct: 136 GSGTVVYT 143


>gi|258621048|ref|ZP_05716082.1| flagellar basal body rod modification protein [Vibrio mimicus
           VM573]
 gi|258625276|ref|ZP_05720184.1| flagellar basal body rod modification protein [Vibrio mimicus
           VM603]
 gi|262166283|ref|ZP_06034020.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           VM223]
 gi|262170824|ref|ZP_06038502.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           MB-451]
 gi|258582449|gb|EEW07290.1| flagellar basal body rod modification protein [Vibrio mimicus
           VM603]
 gi|258586436|gb|EEW11151.1| flagellar basal body rod modification protein [Vibrio mimicus
           VM573]
 gi|261891900|gb|EEY37886.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           MB-451]
 gi|262025999|gb|EEY44667.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           VM223]
          Length = 235

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|83647174|ref|YP_435609.1| flagellar hook capping protein [Hahella chejuensis KCTC 2396]
 gi|83635217|gb|ABC31184.1| Flagellar hook capping protein [Hahella chejuensis KCTC 2396]
          Length = 225

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 17/137 (12%)

Query: 2   EINTEVNPTQQ------EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           +INT    +        +   +  K  LG++ F+ L+I Q+ +Q P +P   +  VAQLA
Sbjct: 3   DINTANQTSDALSQYALQQKSANRKNELGKNEFMDLMIAQLNNQSPLDPQDNTAFVAQLA 62

Query: 56  VFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITN--------ADGSISGVVNAI 104
            FS +E    +NST+  +     S    QAS+ +G+++          ADGSI+GVV   
Sbjct: 63  QFSSVEGIQSLNSTVDTMASQFRSAQALQASAMVGRDVLAPMESAIKSADGSINGVVELP 122

Query: 105 QVSSTGLTAITVDNTEI 121
             +S    ++  +  E+
Sbjct: 123 AGTSQLTISVYNEAGEL 139


>gi|238926248|ref|ZP_04658008.1| possible flagellar basal body rod modification protein [Selenomonas
           flueggei ATCC 43531]
 gi|238885928|gb|EEQ49566.1| possible flagellar basal body rod modification protein [Selenomonas
           flueggei ATCC 43531]
          Length = 168

 Score = 81.2 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 21/149 (14%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++       Q  + SK    LG+DAFL+LL+TQ+++QDP  P   +E ++QLA FS +EQ
Sbjct: 13  VSDYEKAQNQAKAASKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQ 72

Query: 63  SVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGS-----------ISGVVNAI 104
              ++  L+++         S  + Q SS IG+ I     +             G V  +
Sbjct: 73  MTNVSKGLEKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGV 132

Query: 105 QVSSTGLTAI-TVDNT--EIPITTGIRIS 130
            ++    + I  V+    ++ I+  +R+ 
Sbjct: 133 SITDGAPSIIADVNGQSHKVQISEVVRVG 161


>gi|160896080|ref|YP_001561662.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
 gi|160361664|gb|ABX33277.1| flagellar hook capping protein [Delftia acidovorans SPH-1]
          Length = 220

 Score = 81.2 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T     +   S S +     QD FLKLL+ Q+ +QDP  PM  ++  +Q+A  + +   
Sbjct: 10  STADINNKSATSNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGI 69

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
            Q+N T++ +     +  + Q +  IG+ +     ++
Sbjct: 70  QQLNKTMESMAGQFTAMQVLQGTQMIGRTVLTEGNTL 106


>gi|291538501|emb|CBL11612.1| Flagellar hook capping protein [Roseburia intestinalis XB6B4]
          Length = 251

 Score = 81.2 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++ ++       SKS +   LG D FL+LL  ++++QDP EP   +E VAQLA FSQME 
Sbjct: 8   VDGKIPKDTSTTSKSDTSNDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEA 67

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
           ++ M ST++    +  + +       + T    +  G V+ +Q    G   I V+     
Sbjct: 68  TLGMQSTIESSNANALVGKYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYS 126

Query: 123 ITTGIRISN 131
           ++   ++++
Sbjct: 127 LSDVYQVAD 135


>gi|229524193|ref|ZP_04413598.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           bv. albensis VL426]
 gi|229337774|gb|EEO02791.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           bv. albensis VL426]
          Length = 235

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLSSSMTSNQALQASSLVGRDVLVPG 110


>gi|268589983|ref|ZP_06124204.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
           1131]
 gi|291314701|gb|EFE55154.1| basal-body rod modification protein FlgD [Providencia rettgeri DSM
           1131]
          Length = 285

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           NT   P     +  K  ++    D FLK+++TQ+++QDPT+PM+ ++  +QLA  + +E 
Sbjct: 13  NTTAGPQPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97
             +++ ++  + +   S    QA+  +GK +      I
Sbjct: 73  MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI 110


>gi|296103612|ref|YP_003613758.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
 gi|295058071|gb|ADF62809.1| Flagellar basal-body rod modification protein, FlgD [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
          Length = 234

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M +++  N +    + + +      + F+ LL+ Q+K+QDPT PM  ++  +QLA F+  
Sbjct: 1  MAVSSINNNSGAGGTGTGNSAADLSNQFMTLLVAQMKNQDPTNPMDNNQLTSQLAQFNMA 60

Query: 61 EQSVQMNST---LQELLKSNNLAQASSYIGKNITNADG 95
              ++NS+   +Q ++       AS+++G+++     
Sbjct: 61 AGVEKLNSSVAGVQAMMIQLGSMSASAWVGRSVLIEGE 98


>gi|261211323|ref|ZP_05925611.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           RC341]
 gi|260839278|gb|EEX65904.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           RC341]
          Length = 235

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|325918876|ref|ZP_08180953.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325534913|gb|EGD06832.1| flagellar hook capping protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 223

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T    S  K +++LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+
Sbjct: 15  STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74

Query: 69  TLQELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVD 117
            +     S N  Q    ++ +G N+            GS  GVV A             +
Sbjct: 75  KVGNFSDSMNADQVLKGAALVGHNVLVPSAQLAIDATGSAKGVVAATSAGFVNFEITDAN 134

Query: 118 NTEIP 122
            T + 
Sbjct: 135 GTFVK 139


>gi|284989549|ref|YP_003408103.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
           43160]
 gi|284062794|gb|ADB73732.1| flagellar hook capping protein [Geodermatophilus obscurus DSM
           43160]
          Length = 140

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            S       +G+D FL+LL+ Q+++QDP  P   +E ++Q A F+Q+E+  ++ +    L
Sbjct: 17  TSTVTRTDQMGKDVFLQLLVAQMRYQDPNSPASTTEFMSQTATFTQVEKLEEIAAQNASL 76

Query: 74  LKSNNLAQASSYIGKNITNADGSISGVVNAIQVS--STGLTAITVDNTEIPITTGIRIS 130
           +       A + +G  ++  D     V   +     S    +  VD  ++PI     +S
Sbjct: 77  VALQRSLSAGALVGHTVSYTDEGGVTVTGTVGSVRISGDEPSAVVDGVDVPIGRLTEVS 135


>gi|15642197|ref|NP_231829.1| flagellar basal body rod modification protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121586270|ref|ZP_01676060.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
 gi|121726556|ref|ZP_01679805.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
 gi|147674438|ref|YP_001217715.1| flagellar basal body rod modification protein [Vibrio cholerae
           O395]
 gi|153213643|ref|ZP_01948916.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
 gi|153817067|ref|ZP_01969734.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
           8457]
 gi|153820890|ref|ZP_01973557.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
 gi|153825362|ref|ZP_01978029.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
 gi|153829341|ref|ZP_01982008.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
 gi|183179564|ref|ZP_02957775.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
 gi|227082322|ref|YP_002810873.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
 gi|229507725|ref|ZP_04397230.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           BX 330286]
 gi|229512080|ref|ZP_04401559.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           B33]
 gi|229513842|ref|ZP_04403304.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           TMA 21]
 gi|229519216|ref|ZP_04408659.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           RC9]
 gi|229522147|ref|ZP_04411564.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           TM 11079-80]
 gi|229528797|ref|ZP_04418187.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           12129(1)]
 gi|229607229|ref|YP_002877877.1| flagellar basal body rod modification protein [Vibrio cholerae
           MJ-1236]
 gi|254225800|ref|ZP_04919405.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
 gi|254849327|ref|ZP_05238677.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
 gi|255747103|ref|ZP_05421048.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
           CIRS 101]
 gi|262161353|ref|ZP_06030463.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           INDRE 91/1]
 gi|262167776|ref|ZP_06035478.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           RC27]
 gi|262191690|ref|ZP_06049866.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           CT 5369-93]
 gi|297580844|ref|ZP_06942769.1| flagellar basal body rod modification protein [Vibrio cholerae
           RC385]
 gi|298500424|ref|ZP_07010229.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
           757]
 gi|9656754|gb|AAF95343.1| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121549536|gb|EAX59562.1| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80]
 gi|121631009|gb|EAX63388.1| basal-body rod modification protein FlgD [Vibrio cholerae V52]
 gi|124115842|gb|EAY34662.1| basal-body rod modification protein FlgD [Vibrio cholerae 1587]
 gi|125621706|gb|EAZ50035.1| basal-body rod modification protein FlgD [Vibrio cholerae V51]
 gi|126512335|gb|EAZ74929.1| basal-body rod modification protein FlgD [Vibrio cholerae NCTC
           8457]
 gi|126521682|gb|EAZ78905.1| basal-body rod modification protein FlgD [Vibrio cholerae B33]
 gi|146316321|gb|ABQ20860.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
 gi|148875182|gb|EDL73317.1| basal-body rod modification protein FlgD [Vibrio cholerae 623-39]
 gi|149741046|gb|EDM55115.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2]
 gi|183012975|gb|EDT88275.1| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3]
 gi|227010210|gb|ACP06422.1| basal-body rod modification protein FlgD [Vibrio cholerae M66-2]
 gi|227014094|gb|ACP10304.1| basal-body rod modification protein FlgD [Vibrio cholerae O395]
 gi|229332571|gb|EEN98057.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           12129(1)]
 gi|229341072|gb|EEO06077.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           TM 11079-80]
 gi|229343905|gb|EEO08880.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           RC9]
 gi|229349023|gb|EEO13980.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           TMA 21]
 gi|229352045|gb|EEO16986.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           B33]
 gi|229355230|gb|EEO20151.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           BX 330286]
 gi|229369884|gb|ACQ60307.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           MJ-1236]
 gi|254845032|gb|EET23446.1| basal-body rod modification protein FlgD [Vibrio cholerae MO10]
 gi|255735505|gb|EET90905.1| flagellar basal-body rod modification protein FlgD [Vibrio cholera
           CIRS 101]
 gi|262023841|gb|EEY42540.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           RC27]
 gi|262028664|gb|EEY47318.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           INDRE 91/1]
 gi|262032429|gb|EEY50991.1| flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           CT 5369-93]
 gi|297534670|gb|EFH73506.1| flagellar basal body rod modification protein [Vibrio cholerae
           RC385]
 gi|297541117|gb|EFH77171.1| flagellar basal body rod modification protein [Vibrio cholerae MAK
           757]
 gi|327484717|gb|AEA79124.1| Flagellar basal-body rod modification protein FlgD [Vibrio cholerae
           LMA3894-4]
          Length = 235

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|27363706|ref|NP_759234.1| flagellar basal body rod modification protein [Vibrio vulnificus
           CMCP6]
 gi|37679146|ref|NP_933755.1| flagellar basal body rod modification protein [Vibrio vulnificus
           YJ016]
 gi|320157110|ref|YP_004189489.1| flagellar basal-body rod modification protein FlgD [Vibrio
           vulnificus MO6-24/O]
 gi|27359822|gb|AAO08761.1| Flagellar basal-body rod modification protein flgD [Vibrio
           vulnificus CMCP6]
 gi|37197888|dbj|BAC93726.1| flagellar hook capping protein FlgD [Vibrio vulnificus YJ016]
 gi|319932422|gb|ADV87286.1| flagellar basal-body rod modification protein FlgD [Vibrio
           vulnificus MO6-24/O]
          Length = 235

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++ +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MNS  
Sbjct: 24  SKKPTETTGKQELKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNSQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|229172399|ref|ZP_04299958.1| Flagellar hook assembly protein [Bacillus cereus MM3]
 gi|228610870|gb|EEK68133.1| Flagellar hook assembly protein [Bacillus cereus MM3]
          Length = 195

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +              +   + +D FLKL +   + QDP   M  ++ + Q A  S MEQ 
Sbjct: 33  SPVQKANGVSTGTQNTPGIMNKDDFLKLFLASFQQQDPFNAMDTNQMMNQTAQLSLMEQV 92

Query: 64  VQMN---STLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVD 117
             M      LQ  + S  L     ++GK +         + G V  ++++      + V 
Sbjct: 93  QNMTKAVDKLQATMYSTALDGGMKFLGKYVKGVNDKGEKVFGQVETVRLAENNDVQLIVG 152

Query: 118 NTEIPITTGIRISN 131
           N  +      R+S+
Sbjct: 153 NQVVSTRFVERVSD 166


>gi|37525840|ref|NP_929184.1| flagellar basal body rod modification protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36785269|emb|CAE14210.1| Basal-body rod modification protein FlgD (flagellar protein for the
           initiation of hook assembly) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 231

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)

Query: 1   MEINTEVNPTQQEF-------SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQ 53
           M I   VN +           +  K         F+KLL+ Q+K+QDPT PMK +E  + 
Sbjct: 1   MAITGSVNESLNNTIVGEPVLAGKKKGSEELNSNFMKLLVAQMKNQDPTNPMKNNELTSH 60

Query: 54  LAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
           LA  + +    ++N+TL  ++    +N   QAS+ IG+ +     +I
Sbjct: 61  LAQINTLAGIEKLNTTLGSIVGQINNNQPVQASALIGRGVMIPGNTI 107


>gi|77460470|ref|YP_349977.1| flagellar basal body rod modification protein [Pseudomonas
           fluorescens Pf0-1]
 gi|77384473|gb|ABA75986.1| flagellar biosynthesis protein, initiation of hook assembly
           [Pseudomonas fluorescens Pf0-1]
          Length = 242

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                  + +   + LG+DAFL+LL+TQ+K+Q+P +P   S  VAQLA FS +E    +N
Sbjct: 29  GGIASATNSATGGQALGKDAFLQLLVTQLKNQNPLDPQDNSAFVAQLAQFSSLEGITTLN 88

Query: 68  STLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           ST+  L     S+   QASS +G+N+     +      +  ++ T     ++    + IT
Sbjct: 89  STVSSLAGNYNSSQALQASSLVGRNVIVQTNTAQLDDPSKGLTGTATVPSSIAGGTVTIT 148

Query: 125 T 125
            
Sbjct: 149 D 149


>gi|254446081|ref|ZP_05059557.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
 gi|198260389|gb|EDY84697.1| flagellar hook capping protein [Verrucomicrobiae bacterium DG1235]
          Length = 205

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N     +         +K LGQD F KLL TQ+  QDP EPM+ +  +AQ+A FS++E +
Sbjct: 15  NVTTTNSASSGQDRIEQKALGQDEFFKLLTTQLASQDPLEPMEDTAFIAQMASFSELEMT 74

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPI 123
             +  +      +   A A  YIGK ++ + G + G V +++    G T + +D +    
Sbjct: 75  SNLTKSFDNFNSTQQFASAHGYIGKTVSLSSGEV-GEVTSVE-RQNGQTLVFLDGSNTDG 132

Query: 124 TTGIRIS 130
                I 
Sbjct: 133 RDIGTIY 139


>gi|261253615|ref|ZP_05946188.1| flagellar basal-body rod modification protein FlgD [Vibrio
           orientalis CIP 102891]
 gi|260937006|gb|EEX92995.1| flagellar basal-body rod modification protein FlgD [Vibrio
           orientalis CIP 102891]
          Length = 237

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + + +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 26  KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85

Query: 71  QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           + L   + SN   QASS +G+++           DG+++ +V   Q     +  +  
Sbjct: 86  ETLNASMTSNQALQASSLVGRDVLVPGAAGVKKDDGNMAAMVKLPQAVDNVMVRVED 142


>gi|254508413|ref|ZP_05120533.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
           16]
 gi|219548623|gb|EED25628.1| basal-body rod modification protein FlgD [Vibrio parahaemolyticus
           16]
          Length = 236

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + + +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 25  KNKPNETTGKQDLKQEDFLSLLTKQLSQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84

Query: 71  QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           + L   + SN   QASS +G+++           DGS++ +V   Q     +  I  
Sbjct: 85  ESLNASMTSNQALQASSLVGRDVLIPGAAGVKKDDGSMAAMVKLPQAVDNLMVRIED 141


>gi|301168106|emb|CBW27692.1| putative basal-body rod modification protein [Bacteriovorax marinus
           SJ]
          Length = 281

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
             Q+F  +K    LG+D FLKLL  Q+ +QDP +PM   +  A LA FSQ+EQ   MN+ 
Sbjct: 42  PDQKFVDAKEHNKLGKDGFLKLLSHQMANQDPMKPMDQKQFAADLAQFSQLEQLTNMNTK 101

Query: 70  LQELL---KSNNLAQASSYIGKNITNADGSIS 98
           +  +     + N   A+S+IGK I +   S+ 
Sbjct: 102 MDGMQKNDTTENKFMAASFIGKEIMSKGTSVQ 133


>gi|241766919|ref|ZP_04764725.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
 gi|241362623|gb|EER58471.1| flagellar hook capping protein [Acidovorax delafieldii 2AN]
          Length = 220

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           +   +     QD FLKLL+ Q+ +QDP  P+  ++  +Q+A  + +    Q+N T++ + 
Sbjct: 22  ADPATDPNAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTGIQQLNQTMKSMA 81

Query: 75  KSN---NLAQASSYIGKNITNADGSI 97
                  + Q +S IG+++     ++
Sbjct: 82  DQFSALQVLQGASMIGRSVVTEGNNL 107


>gi|320354324|ref|YP_004195663.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
 gi|320122826|gb|ADW18372.1| flagellar hook capping protein [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---N 77
           K LGQD FL LL+ Q+++QDP  P  A+E  AQLA +SQ+EQ   +N  + EL  +   +
Sbjct: 20  KALGQDDFLTLLVAQLQNQDPMNPADATEFTAQLAQYSQLEQLFNLNDAMDELTSATTES 79

Query: 78  NLAQASSYIGKNITNADGSISGVVNAIQV 106
                 S IG+++       +     +Q+
Sbjct: 80  QNISTLSLIGQDVVVEGAKFTLGEAPVQI 108


>gi|156973585|ref|YP_001444492.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156525179|gb|ABU70265.1| hypothetical protein VIBHAR_01288 [Vibrio harveyi ATCC BAA-1116]
          Length = 235

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++  +S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MNS  
Sbjct: 24  NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|153834466|ref|ZP_01987133.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
 gi|269961598|ref|ZP_06175960.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
 gi|148869162|gb|EDL68194.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
 gi|269833639|gb|EEZ87736.1| flagellar basal body rod modification protein [Vibrio harveyi 1DA3]
          Length = 235

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            ++  +S  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MNS  
Sbjct: 24  NKKTEESTGKQDLKQEDFLSLLTKQLSQQDPFKPVGNDQMIAQMASFATVDGIGKMNSQF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD 94
           + L   + SN   QASS +G+++    
Sbjct: 84  ESLNSSMTSNQALQASSLVGRDVLVPG 110


>gi|28211325|ref|NP_782269.1| putative basal-body rod modification protein flgD [Clostridium
           tetani E88]
 gi|28203765|gb|AAO36206.1| putative basal-body rod modification protein flgD [Clostridium
           tetani E88]
          Length = 174

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           N T +     +  + L ++AFL++L  ++ HQDP      +E V Q+A F+ +EQ   +N
Sbjct: 17  NYTDRGTKIVRPGEELDKNAFLRILAAELSHQDPLSAKDGTEFVTQMAQFTSIEQMSNLN 76

Query: 68  STLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
           +T++    + +L    + +            GV+  +      +    V   
Sbjct: 77  NTMR-FAGATSLIGKYAMVNNT-DTYGNLYHGVITGVSRDKGSIKINMVVGE 126


>gi|327480019|gb|AEA83329.1| flagellar basal body rod modification protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 227

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 9/125 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + ++  Q    +      LG++ FL+LL+ Q+ +Q+P EP +  E + QLA FS +E   
Sbjct: 12  SILDQYQFGEKREAKGNDLGKNEFLELLVAQLNNQNPLEPQENGEFIGQLAQFSTVEGVE 71

Query: 65  QMNSTLQELL---KSNNLAQASSYIGKNITNA------DGSISGVVNAIQVSSTGLTAIT 115
           ++NS++Q +L   +S+   QASS +G+ +         D S +   + +  +S+    + 
Sbjct: 72  KLNSSMQTILSGYQSSQALQASSLVGRKVIVPTDKAVVDTSETFKASLVLPTSSSNVFVN 131

Query: 116 VDNTE 120
           + ++ 
Sbjct: 132 IYDST 136


>gi|212709491|ref|ZP_03317619.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
           30120]
 gi|212687829|gb|EEB47357.1| hypothetical protein PROVALCAL_00533 [Providencia alcalifaciens DSM
           30120]
          Length = 288

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           N+   P     +  K  ++    D FLK+++TQ+++QDPT+PM  ++   QLA  + +E 
Sbjct: 13  NSVAGPAAAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97
             +++ ++  + +   S    QA+  +GK +      I
Sbjct: 73  MNKLSDSVTGISQQIGSGQSLQATQLVGKGVLIPRNEI 110


>gi|291519590|emb|CBK74811.1| Flagellar hook capping protein [Butyrivibrio fibrisolvens 16/4]
          Length = 273

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
                 Q+ FL+LL+ ++++QDP EP    + VAQLA F+Q+E    + + +  +  +  
Sbjct: 40  KGTQYNQEMFLQLLVAEMQYQDPLEPTDNGQYVAQLASFTQIEAIQSVQNDMATIEAN-- 97

Query: 79  LAQASSYIGKNITNADGS--ISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
                S +GK +   D +  + G VN +     G   + V+     +     + +
Sbjct: 98  -----SLVGKYVVINDNNKEVRGKVNFVSQDDDGTMYVNVNEKNYKVDDIESVVD 147


>gi|126668557|ref|ZP_01739511.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
 gi|126626962|gb|EAZ97605.1| Flagellar hook capping protein [Marinobacter sp. ELB17]
          Length = 224

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 11/129 (8%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
              ++  Q +   +  K  LG++ F++L++ Q+K+Q+P +P    E ++QLA FS +E+ 
Sbjct: 10  TDVLSQYQLKQQSASGKGELGKNEFMELMLAQLKNQNPLDPQDNGEFISQLAQFSSLEEM 69

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLT 112
            +++  +  ++   +S    QAS+ +GK +          A G ++G V+    +     
Sbjct: 70  QKLSGNVDSVIGEFRSTKALQASAMVGKTVLVASDLAMLGASGEVNGTVDVPASTGGVQV 129

Query: 113 AITVDNTEI 121
           +I   + E+
Sbjct: 130 SILNGSGEL 138


>gi|266623342|ref|ZP_06116277.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
 gi|288864880|gb|EFC97178.1| flagellar hook capping protein [Clostridium hathewayi DSM 13479]
          Length = 205

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             S K +  + FL L++ Q+K+QD   P+  ++ V QLA  S M+Q        +E+  +
Sbjct: 61  DASDKAVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQM-------EEMAYN 113

Query: 77  NNLAQASSYIGKNITNADGSI-------SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
                 +S +GK +T A  ++        GVVN + +   G   I V+     +   + I
Sbjct: 114 AKSTYVTSLVGKTVTAAKFTVAGDLKKTEGVVNKVSLL-DGKFVIYVEGESYGMDEIMEI 172


>gi|317406202|gb|EFV86451.1| basal-body rod modification protein FlgD [Achromobacter
           xylosoxidans C54]
          Length = 231

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T +   Q   + + + + L QD FLKLL+TQ+K+QDP  PM+ +E  +QLA  S +E   
Sbjct: 11  TAMGLAQTGANSASTAQGL-QDQFLKLLVTQLKNQDPLNPMQNAELTSQLAQISTVEGIT 69

Query: 65  QMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            + +T+      +  +    A + IGK +     ++   V+    +   +T   +D  + 
Sbjct: 70  NLKNTMLAISGQIDVSQSMNAVAMIGKGVLVPGSNVKVGVSTENPAERVVTPYGIDLQKD 129

Query: 122 PITTGIRISN 131
                +RI++
Sbjct: 130 AAKVQVRIAD 139


>gi|148546705|ref|YP_001266807.1| flagellar basal body rod modification protein [Pseudomonas putida
           F1]
 gi|148510763|gb|ABQ77623.1| flagellar hook capping protein [Pseudomonas putida F1]
          Length = 234

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                   + +      +LG+DAFL+LL+TQ++HQ+P +P   SE VAQLA FS +E   
Sbjct: 20  GTSTKKTTDTASKTGNDSLGKDAFLQLLVTQMQHQNPLDPQDNSEFVAQLAQFSSLEGIT 79

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96
            +N ++  +   + S+   QASS +G+++   +  
Sbjct: 80  SLNDSVSSITSAMASSQALQASSLVGRSVVVQNDK 114


>gi|330811236|ref|YP_004355698.1| basal-body rod modification protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379344|gb|AEA70694.1| Putative basal-body rod modification protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +T  +        +  KK LG+DAFL+LL+TQ+K+Q+P EP    E VAQLA FS +E  
Sbjct: 24  STTTDALGAATGAATGKKELGKDAFLQLLVTQLKNQNPLEPQDNGEFVAQLAQFSSLEGI 83

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96
             +N T+  +     S+   QASS +G+++      
Sbjct: 84  TTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDK 119


>gi|302670725|ref|YP_003830685.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
           B316]
 gi|302395198|gb|ADL34103.1| flagellar hook capping protein FlgD [Butyrivibrio proteoclasticus
           B316]
          Length = 237

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 16/136 (11%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N EV  T +E +   +     +D+FLK+L+ Q+K+QDP EP   +E + Q A F+Q+EQ 
Sbjct: 13  NGEVANTVKEDATKNATAGYDKDSFLKILVAQMKYQDPMEPTSNTEYINQYATFTQVEQ- 71

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGLTAIT 115
                 L  +  S  L++AS  +GK +              + GVV+ +  ++     + 
Sbjct: 72  ------LSNMANSMALSRASEMVGKTVRVTQYNPDNGKTTEVVGVVDFVTYNAN-KAYLN 124

Query: 116 VDNTEIPITTGIRISN 131
           ++ T   +     + +
Sbjct: 125 IEGTNYNVEDVTEVFD 140


>gi|317121821|ref|YP_004101824.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
           12885]
 gi|315591801|gb|ADU51097.1| flagellar hook capping protein [Thermaerobacter marianensis DSM
           12885]
          Length = 183

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
           DAF +LL  Q+++QDP +P++ +  VAQLA  +Q+E++  + +T+  L     L +A + 
Sbjct: 72  DAFFRLLAAQLRYQDPLQPLQDTAFVAQLAQLTQLEETRALRATVSGLAALPLLGRAVA- 130

Query: 86  IGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
               +T ADG   G V  +++       + +D   +     
Sbjct: 131 ----VTTADGEQQGTVTGVRLDP-AAPGLIIDGRPVAWADV 166


>gi|121596116|ref|YP_988012.1| flagellar hook capping protein [Acidovorax sp. JS42]
 gi|120608196|gb|ABM43936.1| flagellar hook capping protein [Acidovorax sp. JS42]
          Length = 216

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I T         + + +     QD FLKLL+ Q+ +QDP  P+  ++   Q+A  + +  
Sbjct: 6   IGTTATTNTGASANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTG 65

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
              +N T+Q +     +    Q  S IG+++      +S   G            T + V
Sbjct: 66  IQTLNLTMQTMAEEFSTMQQIQGISLIGRSVLTEGDRLSISDGKGKGYFNLDNTATEVQV 125

Query: 117 D 117
           D
Sbjct: 126 D 126


>gi|313894826|ref|ZP_07828386.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976507|gb|EFR41962.1| flagellar hook capping protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 180

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 21/150 (14%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++       QE + +K    LG+DAFL+LL+TQ+K+QDP +P   S+ ++QLA FS +EQ
Sbjct: 17  LSDYEAAKNQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQ 76

Query: 63  SVQMNSTL-------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAI 104
              +   L         +  S  + Q S  IG+       +   DG ++     G +  +
Sbjct: 77  MTNVAKGLSDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGV 136

Query: 105 QVSSTGLTAI-TVDNTE--IPITTGIRISN 131
            ++    + I  V+     + I+  +RI +
Sbjct: 137 SITDGEPSVIADVNGKTHQVKISELVRIGD 166


>gi|240145499|ref|ZP_04744100.1| basal-body rod modification protein FlgD [Roseburia intestinalis
           L1-82]
 gi|257202314|gb|EEV00599.1| basal-body rod modification protein FlgD [Roseburia intestinalis
           L1-82]
 gi|291536009|emb|CBL09121.1| Flagellar hook capping protein [Roseburia intestinalis M50/1]
          Length = 251

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
             LG D FL+LL  ++++QDP EP   +E VAQLA FSQME ++ M ST++    +  + 
Sbjct: 26  NDLGYDQFLQLLCAEMQYQDPLEPTSNTEYVAQLATFSQMEATLGMQSTIESSNANALVG 85

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           +       + T    +  G V+ +Q    G   I V+     ++   ++++
Sbjct: 86  KYVIIKTTSSTGETTATEGFVDYVQ-KENGEQKICVNGVLYSLSDVYQVAD 135


>gi|289666046|ref|ZP_06487627.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670505|ref|ZP_06491580.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 221

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                  K +  LGQ  FLKL+  Q++HQDP +PM  S  + QLA FS ++    +N+  
Sbjct: 15  STGSKTPKKEDALGQADFLKLMTEQLQHQDPLKPMDNSAFLGQLAQFSTVQGIGDLNTKF 74

Query: 71  QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
             L  S +  Q    ++ +G N+            GS  GVV A    +        +  
Sbjct: 75  SNLSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|159045905|ref|YP_001534699.1| flagellar basal body rod modification protein [Dinoroseobacter
           shibae DFL 12]
 gi|157913665|gb|ABV95098.1| flagellar hook capping protein FlgD [Dinoroseobacter shibae DFL 12]
          Length = 220

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
              P     +++ +      + FL++L TQ+++QDP EP+ + +   QLA FS +EQ  Q
Sbjct: 9   TATPQPSGSAQTATAIASDFETFLRMLTTQLENQDPLEPVASQDLAVQLATFSGVEQQTQ 68

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
            NS L++L   +   +L+Q +S++G +     G++    + +++              + 
Sbjct: 69  TNSLLEDLGSQMGLMSLSQLASWVGMDALAE-GNVHFDGSPVEIKPNIPALAEKAELVVY 127

Query: 123 ITTGIRI 129
              G  +
Sbjct: 128 RRDGTEV 134


>gi|39995525|ref|NP_951476.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens
          PCA]
 gi|39982288|gb|AAR33749.1| flagellar hook assembly protein FlgD [Geobacter sulfurreducens
          PCA]
 gi|298504525|gb|ADI83248.1| flagellar hook capping protein FlgD [Geobacter sulfurreducens
          KN400]
          Length = 218

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 3  INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
          +    N T    +  K    + +D FLKL +TQ+++QDP  P  ++E + QLA  +Q+EQ
Sbjct: 2  VYGVTNDTAAAAAAMKKSTGMNKDDFLKLFVTQLQNQDPLNPQDSTEFIGQLAQLTQVEQ 61

Query: 63 SVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSI 97
          +       S L  L+       A S+IGK IT +   I
Sbjct: 62 AYNTNSNLSNLLNLVNGATSLSAVSFIGKEITASGDLI 99


>gi|304437041|ref|ZP_07397004.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369992|gb|EFM23654.1| flagellar hook capping protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 174

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 21/149 (14%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++       Q  +  K    LG+DAFL+LL+TQ+++QDP  P   +E ++QLA FS +EQ
Sbjct: 19  VSDYEAAQNQAKAGKKDNSALGKDAFLQLLVTQMRYQDPLNPQDNAEYLSQLAQFSALEQ 78

Query: 63  SVQMNSTLQELL-------KSNNLAQASSYIGKNITNADGS-----------ISGVVNAI 104
              ++  L+++         S  + Q SS IG+ I     +             G V  +
Sbjct: 79  MTNVSKGLEKVSKIVDNIDSSVLIGQLSSMIGQPIQWITETKGKDGAVTKQNFEGKVIGV 138

Query: 105 QVSSTGLTAI-TVDNT--EIPITTGIRIS 130
            ++    + I  V+    ++ I+  +R+ 
Sbjct: 139 SITDGAPSIIADVNGQSHKVQISEVVRVG 167


>gi|160880842|ref|YP_001559810.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
 gi|160429508|gb|ABX43071.1| flagellar hook capping protein [Clostridium phytofermentans ISDg]
          Length = 275

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                            LG+DAFL+LL+ Q+++QDP  P   +E V+QLA FSQ+E+   
Sbjct: 16  TNTAITTTNKTKLGSSELGKDAFLQLLVCQMQNQDPLNPSTDTEFVSQLATFSQLEELQN 75

Query: 66  MNSTLQELLKSNNLAQASSYIGKNIT-------NADGSISGVVNAIQVSSTGLTAITVDN 118
           + ++  +       +QA S +GK++             ISG V+ I +S +    ++V+ 
Sbjct: 76  LTASTDK-------SQAFSLVGKDVILNATDSNGRTTYISGTVDFINMSKS-KVQLSVNG 127

Query: 119 TEIPITTGIRISN 131
               ++    + +
Sbjct: 128 ELYDMSQLYTVVD 140


>gi|229918634|ref|YP_002887280.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
 gi|229470063|gb|ACQ71835.1| flagellar hook capping protein [Exiguobacterium sp. AT1b]
          Length = 142

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
           + S  K+     +D F+KLL+ QI +QDP  PM+  E +AQ+A FS +EQ   ++  L  
Sbjct: 15  DQSLPKATNQYDKDMFMKLLLAQIANQDPMSPMEDKEFIAQMAQFSSLEQMQAISKQLDS 74

Query: 73  LL---KSNNLAQASSYIGKNITNADGSI------SGVVNAIQVSS-TGLTAITVDNTEIP 122
           +L     +++++ SS IGK I     +       SG V +I  +  TG  A   D T + 
Sbjct: 75  VLVDRHMSSISEYSSMIGKTIDFTSETSEETTKGSGRVVSISRNDLTGYMADLEDGTSVS 134

Query: 123 ITTGIRI 129
           +     I
Sbjct: 135 VYDITSI 141


>gi|104782844|ref|YP_609342.1| flagellar basal body rod modification protein [Pseudomonas
           entomophila L48]
 gi|95111831|emb|CAK16555.1| flagellar Basal-body rod modification protein FlgD [Pseudomonas
           entomophila L48]
          Length = 234

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 11/125 (8%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             T++  ++   K  LG+DAFL+LL+TQ++HQ+P +P    E VAQLA FS +E    +N
Sbjct: 23  GTTKKPTTEKTDKNALGKDAFLQLLVTQMQHQNPLDPQDNGEFVAQLAQFSSLEGIQTLN 82

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITV 116
           S++  +   + S+   QASS +G+++   +         S +G V   Q  + G   I  
Sbjct: 83  SSVNSIITGMGSSQALQASSLVGRSVIVQNEKAMVDTTKSFTGQVVVPQNITDGKVTIKD 142

Query: 117 DNTEI 121
            +  +
Sbjct: 143 KDGNV 147


>gi|222112271|ref|YP_002554535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
 gi|221731715|gb|ACM34535.1| flagellar hook capping protein [Acidovorax ebreus TPSY]
          Length = 216

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I T         + + +     QD FLKLL+ Q+ +QDP  P+  ++   Q+A  + +  
Sbjct: 6   IGTTATTNTGASANATNDPAAMQDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTG 65

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
              +N T+Q +     +    Q  S IG+++      +S   G            T + V
Sbjct: 66  IQTLNLTMQTMAEEFSTMQQIQGISLIGRSVLTEGDRLSVSDGKGKGYFNLDNTATDVQV 125

Query: 117 D 117
           D
Sbjct: 126 D 126


>gi|152979993|ref|YP_001353110.1| flagellar basal body rod modification protein [Janthinobacterium
           sp. Marseille]
 gi|151280070|gb|ABR88480.1| FlgD flagellar hook capping protein [Janthinobacterium sp.
           Marseille]
          Length = 225

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + ++      +  KS     QD FLKLL+TQ+++QDP  P+  ++  +QLA  S +    
Sbjct: 14  SLLDQMNGAAASKKSTAEEAQDRFLKLLVTQMQNQDPLNPLDNAQVTSQLAQLSTVTGID 73

Query: 65  QMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
           ++N TL+ L+   +S  L QAS+ I   +      +
Sbjct: 74  KLNGTLESLMGNYQSAQLLQASNMIDHGVLAPGSQL 109


>gi|30248321|ref|NP_840391.1| flagellar basal body rod modification protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138207|emb|CAD84215.1| putative basal-body rod modification protein FlgD [Nitrosomonas
           europaea ATCC 19718]
          Length = 223

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++  +          +  +   QD FLKLL+TQ+++QDP  PM  +E  +Q+A  S +  
Sbjct: 10  VSELLASNSGSIKSYRKDEEDPQDRFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSG 69

Query: 63  SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNT 119
             ++N+TL++L+  +      +A++ IG+ +      +   +           A +VD  
Sbjct: 70  IDKLNTTLEKLVADSDARRSFEAATMIGRGVLVPGTDM--QLENQAAIGGFELAESVDKL 127

Query: 120 EIPITTGIRIS 130
            + +     I+
Sbjct: 128 TVTVKDSAGIT 138


>gi|304321137|ref|YP_003854780.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
 gi|303300039|gb|ADM09638.1| putative FlgD protein [Parvularcula bermudensis HTCC2503]
          Length = 202

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           MEI+     +    +  K+ ++L    DAFL LL  Q+K+QDP  P+ +++ V QLA FS
Sbjct: 1   MEISPTSAQSAASAANQKATQSLATDLDAFLNLLTAQMKNQDPFAPIDSTQFVEQLATFS 60

Query: 59  QMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSISGVVNAIQVSSTGLT 112
            +EQ VQ N  L+ ++         Q +  IG  I  ++ +ISG  + + + S    
Sbjct: 61  SLEQQVQTNKYLETMMGLLQSTLGGQQTDVIGAQIGASEITISGAFDPLPIVSGSDA 117


>gi|254785370|ref|YP_003072799.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
           turnerae T7901]
 gi|237687333|gb|ACR14597.1| flagellar basal-body rod modification protein FlgD [Teredinibacter
           turnerae T7901]
          Length = 238

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
               +  +      LGQ AFL+L+ITQ+++QDP  P + +E +AQLA FS +E   ++N+
Sbjct: 16  SIANKTKEEPKSNELGQSAFLELMITQMENQDPLSPQENTEFIAQLAQFSSVEALDKLNN 75

Query: 69  TLQELLKS---NNLAQASSYIGKNITNADGSI 97
                  +   N   QAS+ +G+++T      
Sbjct: 76  NFDSFTNNFMANQALQASTLVGRSVTVPAEQT 107


>gi|226327747|ref|ZP_03803265.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
 gi|225203451|gb|EEG85805.1| hypothetical protein PROPEN_01620 [Proteus penneri ATCC 35198]
          Length = 270

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT +      +   KS     +  FL LLITQ+K+QDPT PM+ +E  +QLA  S +E  
Sbjct: 7   NTIIGDAPSSYHTKKSGSEDIKGNFLTLLITQMKNQDPTNPMQNNELTSQLAQISTVEGI 66

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
             +N T+  +   +  +   +ASS +G  +  +   I
Sbjct: 67  ETLNKTVNNIVGQIDQSQALRASSLVGHGVMVSGNKI 103


>gi|82702452|ref|YP_412018.1| flagellar basal body rod modification protein [Nitrosospira
           multiformis ATCC 25196]
 gi|82410517|gb|ABB74626.1| Flagellar hook capping protein [Nitrosospira multiformis ATCC
           25196]
          Length = 222

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 S +K  +   QD FLKLL+TQ+K+QDP  P+  ++   QLA  S +    ++N+
Sbjct: 15  AAYGTRSTAKPAEEDLQDRFLKLLVTQMKNQDPLNPLDNAQVTTQLAQISTVNGVERLNA 74

Query: 69  TLQELLKSN---NLAQASSYIGKNITNADGSIS 98
           T++ +  S       QA+  IG+ +     ++ 
Sbjct: 75  TIRTIADSFTAGQSLQAAGMIGREVLVPGSALQ 107


>gi|292670235|ref|ZP_06603661.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
           noxia ATCC 43541]
 gi|292648187|gb|EFF66159.1| flagellar Basal-body rod modification protein FlgD [Selenomonas
           noxia ATCC 43541]
          Length = 174

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 21/134 (15%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL------- 70
           K    LG+DAFL+LL+TQ+K+QDP +P   SE ++QLA FS +EQ   ++  L       
Sbjct: 34  KRNDALGKDAFLQLLVTQMKYQDPLDPQDNSEYLSQLAQFSALEQMTNVSKGLSEVSKIV 93

Query: 71  QELLKSNNLAQASSYIGKNITNADGS-----------ISGVVNAIQVSSTGLTAITVDNT 119
             +  S  + Q SS IG+ +     +             G V  + ++    + I     
Sbjct: 94  DNINSSVLIGQLSSMIGQPVQWITETKGEDGQLSKQSFEGKVIGVSITDGTPSIIADVGG 153

Query: 120 E---IPITTGIRIS 130
           +   + I+  +RI 
Sbjct: 154 KTHQVQISKVVRIG 167


>gi|261344143|ref|ZP_05971787.1| basal-body rod modification protein FlgD [Providencia rustigianii
           DSM 4541]
 gi|282567735|gb|EFB73270.1| basal-body rod modification protein FlgD [Providencia rustigianii
           DSM 4541]
          Length = 285

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           N+   P     +  K  ++    D FL +++TQ+++QDPT+PM  ++   QLA  + +E 
Sbjct: 13  NSVAGPAAVASNVPKKSQSDDMRDTFLTMIVTQMQNQDPTKPMDNADLTGQLAQIATLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
             +++ ++  + +   S    QA+  +GK +      I  ++ +++  S G  +  
Sbjct: 73  MNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEI--ILASLKKESNGENSTV 126


>gi|323495378|ref|ZP_08100455.1| flagellar basal body rod modification protein [Vibrio brasiliensis
           LMG 20546]
 gi|323310301|gb|EGA63488.1| flagellar basal body rod modification protein [Vibrio brasiliensis
           LMG 20546]
          Length = 237

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + + +++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 26  KNKPNETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 85

Query: 71  QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           + L   + SN   QASS +G+++           DGS++ +V   Q     +  +  
Sbjct: 86  ETLNASMTSNQALQASSLVGRDVLVPGAAGVKNDDGSMAAMVKLPQAVDNLMVRVED 142


>gi|52841450|ref|YP_095249.1| flagellar basal body rod modification protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628561|gb|AAU27302.1| flagellar basal body rod modification protein FlgD [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 225

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  +            S  ++ LGQ  FL+L++ Q+++QDP +P    E ++QLA FS  
Sbjct: 6   VNGSNSAGGLGLNQIDSGKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116
           +   +M  +LQ+L   L+SN   QAS+ +G+ +     ++S G    ++ +      ++ 
Sbjct: 66  DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125

Query: 117 DNTEIPITTGIRI 129
               I   +G  I
Sbjct: 126 LRAAIYTESGELI 138


>gi|320530203|ref|ZP_08031273.1| flagellar hook capping protein [Selenomonas artemidis F0399]
 gi|320137636|gb|EFW29548.1| flagellar hook capping protein [Selenomonas artemidis F0399]
          Length = 176

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 21/150 (14%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++       QE + +K    LG+DAFL+LL+TQ+K+QDP +P   S+ ++QLA FS +EQ
Sbjct: 13  LSDYEAAKNQEKAANKKNDALGKDAFLQLLVTQMKYQDPLDPQDNSQYLSQLAQFSALEQ 72

Query: 63  SVQMNSTL-------QELLKSNNLAQASSYIGK------NITNADGSIS-----GVVNAI 104
              +   L         +  S  + Q S  IG+       +   DG ++     G +  +
Sbjct: 73  MTNVAKGLSDVQKVVDNINSSVLIGQLSGMIGQKAQWITQVKGEDGKMTKQSFEGKIIGV 132

Query: 105 QVSSTGLTAI-TVDNTE--IPITTGIRISN 131
            ++    + I  V+     + I+  +RI +
Sbjct: 133 SITDGEPSVIADVNGKTHQVKISELVRIGD 162


>gi|84388090|ref|ZP_00990986.1| flagellar basal body rod modification protein [Vibrio splendidus
           12B01]
 gi|84377157|gb|EAP94027.1| flagellar basal body rod modification protein [Vibrio splendidus
           12B01]
          Length = 237

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    ++  ++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +
Sbjct: 21  SLQDGAKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 80

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114
           MN+  + L   + SN   QASS +G+++           DG ++ +V   Q     +  +
Sbjct: 81  MNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKPGDGGMASMVKLPQAMDNVIVRV 140


>gi|254436854|ref|ZP_05050348.1| flagellar hook capping protein, putative [Octadecabacter
           antarcticus 307]
 gi|198252300|gb|EDY76614.1| flagellar hook capping protein, putative [Octadecabacter
           antarcticus 307]
          Length = 220

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 1   MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           MEI+  + P  Q     +   SK+  +   + FLK+L  Q+++QDP  P  +SE   QLA
Sbjct: 1   MEISPALTPVTQPSSAPQTETSKTVISSDFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 60

Query: 56  VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93
            FS +EQ+V  N  L  L+   N   +AQ + ++GK     
Sbjct: 61  TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKEARAT 101


>gi|222100887|ref|YP_002535455.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
           DSM 4359]
 gi|221573277|gb|ACM24089.1| Basal-body rod modification protein FlgD [Thermotoga neapolitana
           DSM 4359]
          Length = 223

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 6/119 (5%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N   +  Q   +   + KTL +DAFL+LL+ +++ QDP EPM+  + ++QL+  + +EQ 
Sbjct: 7   NIYYSTLQGVRTNYTASKTLDKDAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQI 66

Query: 64  VQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV 116
             + S +++ +++      AQ +S IGK +   +  ++   G  ++I  +      + +
Sbjct: 67  TNLTSAVKDFVEAQTSVNPAQLASLIGKYVVVKNNEVNLKDGEADSIIFNLDEDANVVI 125


>gi|269796391|ref|YP_003315846.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
 gi|269098576|gb|ACZ23012.1| flagellar hook capping protein [Sanguibacter keddieii DSM 10542]
          Length = 186

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +             S +KK+L  + F+ LL+ Q+K+QDP+ PM  +E +AQ    + ME+
Sbjct: 16  VKNAQGLYTGANGASTAKKSLDNETFMTLLVAQLKYQDPSSPMDTTEMMAQTTQLASMEK 75

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
              M  T+ E         A++ +GK +  T ADG++   V         +  + VD  E
Sbjct: 76  LTTMTDTIAESFALQMRDAAATLLGKQVSYTEADGTVKTGVAQSVSYKYSVPMVVVDGVE 135

Query: 121 IPITTGIRI 129
           + +     +
Sbjct: 136 VTLDAVQTV 144


>gi|54297181|ref|YP_123550.1| flagellar basal body rod modification protein [Legionella
           pneumophila str. Paris]
 gi|53750966|emb|CAH12377.1| Flagellar basal-body rod modification protein FlgD [Legionella
           pneumophila str. Paris]
          Length = 225

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 4/133 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  +  +         S  ++ LGQ  FL+L++ Q+++QDP +P    E ++QLA FS  
Sbjct: 6   VNGSNSIGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116
           +   +M  +LQ+L   L+SN   QAS+ +G+ +     ++S G    ++ +      ++ 
Sbjct: 66  DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125

Query: 117 DNTEIPITTGIRI 129
               I   +G  I
Sbjct: 126 LRAAIYTESGELI 138


>gi|120554032|ref|YP_958383.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
 gi|120323881|gb|ABM18196.1| flagellar hook capping protein [Marinobacter aquaeolei VT8]
          Length = 225

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 11/109 (10%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
            +  K+     LG+DAF++L++ Q+K+Q+P EP    + +AQLA FS +E+   ++ ++ 
Sbjct: 19  NQEGKTPGGNELGKDAFMELMLAQLKNQNPLEPQDNGDFIAQLAQFSSLEEMQNLSGSVD 78

Query: 72  ELL---KSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSST 109
           +++   +S+   QAS+ +GK +           +G I+G +     +  
Sbjct: 79  DVVGQFRSSQALQASAMVGKTVLAPSSVGILGSEGEITGTIQVPASTGG 127


>gi|332187922|ref|ZP_08389655.1| flagellar hook capping family protein [Sphingomonas sp. S17]
 gi|332012083|gb|EGI54155.1| flagellar hook capping family protein [Sphingomonas sp. S17]
          Length = 231

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
            +K   TL Q AFL LL  Q+K+QDP  PM  ++ VAQ+A FS +    +MN+TL  +  
Sbjct: 29  PAKKSTTLDQSAFLTLLTAQLKNQDPFAPMDNTQMVAQMAQFSSVAGISEMNTTLASIAT 88

Query: 76  SNNLAQ---ASSYIGKNITNADGSISGVVNA 103
             N      A +Y+GK +     +  G  + 
Sbjct: 89  KLNATTPADAMNYVGKTVLTEGTTAYGRTSG 119


>gi|227356002|ref|ZP_03840394.1| flagellar basal body rod modification protein [Proteus mirabilis
           ATCC 29906]
 gi|227163990|gb|EEI48892.1| flagellar basal body rod modification protein [Proteus mirabilis
           ATCC 29906]
          Length = 268

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT +      +   K      +  FL LLITQ+++QDPT PM+ +E  +QLA  S +E  
Sbjct: 13  NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
             +N T+  ++     +   +A+S +   +  A   IS
Sbjct: 73  ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110


>gi|99082818|ref|YP_614972.1| flagellar basal body rod modification protein [Ruegeria sp. TM1040]
 gi|99039098|gb|ABF65710.1| flagellar basal-body rod modification protein FlgD [Ruegeria sp.
           TM1040]
          Length = 231

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
            + S  T   + FL+L+ TQ K+QDP EPM +S+  AQLA FS +EQ V  N TL  +L 
Sbjct: 24  SATSALTSDFETFLRLMTTQAKYQDPLEPMDSSDYTAQLAQFSSVEQQVLTNETLTSMLT 83

Query: 76  S---NNLAQASSYIGKNITNADGSISGVVNAIQVSST 109
           +   +N++Q + ++G+ +           +++ ++  
Sbjct: 84  ALSLSNMSQLTGWVGREVRAQAAGYFDGSSSVSIAPN 120


>gi|148358805|ref|YP_001250012.1| flagellar basal body rod modification protein FlgD [Legionella
           pneumophila str. Corby]
 gi|296106850|ref|YP_003618550.1| flagellar basal-body rod modification protein FlgD [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280578|gb|ABQ54666.1| flagellar basal body rod modification protein FlgD [Legionella
           pneumophila str. Corby]
 gi|295648751|gb|ADG24598.1| flagellar basal-body rod modification protein FlgD [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 225

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  +            S  ++ LGQ  FL+L++ Q+++QDP +P    E ++QLA FS  
Sbjct: 6   VNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116
           +   +M  +LQ+L   L+SN   QAS+ +G+ +     ++S G    ++ +      ++ 
Sbjct: 66  DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125

Query: 117 DNTEIPITTGIRI 129
               I   +G  I
Sbjct: 126 LRAAIYTESGELI 138


>gi|290474971|ref|YP_003467855.1| flagellar initiation of hook assembly [Xenorhabdus bovienii
           SS-2004]
 gi|289174288|emb|CBJ81078.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
           bovienii SS-2004]
          Length = 231

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+ V        +   K    +D FL LL+ Q+K+QDPT PM+ +E   QLA  S ++  
Sbjct: 13  NSTVGELATLNKQQPQKSGDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQLAQISTVQGV 72

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N TL  +   ++ N   Q +  IG+ +      I
Sbjct: 73  EKLNKTLGAVVGQMEGNQAMQTTMLIGRTVMIPGDKI 109


>gi|54294162|ref|YP_126577.1| flagellar basal body rod modification protein [Legionella
           pneumophila str. Lens]
 gi|53753994|emb|CAH15465.1| Flagellar basal-body rod modification protein FlgD [Legionella
           pneumophila str. Lens]
 gi|307609976|emb|CBW99505.1| flagellar basal-body rod modification protein FlgD [Legionella
           pneumophila 130b]
          Length = 225

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  +            S  ++ LGQ  FL+L++ Q+++QDP +P    E ++QLA FS  
Sbjct: 6   VNGSNSAGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTN 65

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS-GVVNAIQVSSTGLTAITV 116
           +   +M  +LQ+L   L+SN   QAS+ +G+ +     ++S G    ++ +      ++ 
Sbjct: 66  DGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSN 125

Query: 117 DNTEIPITTGIRI 129
               I   +G  I
Sbjct: 126 LRAAIYTESGELI 138


>gi|264676569|ref|YP_003276475.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
 gi|299531287|ref|ZP_07044697.1| flagellar hook capping protein [Comamonas testosteroni S44]
 gi|262207081|gb|ACY31179.1| flagellar hook capping protein [Comamonas testosteroni CNB-2]
 gi|298720694|gb|EFI61641.1| flagellar hook capping protein [Comamonas testosteroni S44]
          Length = 220

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++     T      + +     QD FLKLL+ Q+ +QDP  PM  +E  +Q+A  + +  
Sbjct: 8   VDGTTTNTTSNTKNAVTNPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
             Q+N T+  +     +  + Q +S IG+ +     ++
Sbjct: 68  IQQLNQTMASMSSQFTAMQVLQGTSMIGRTVLTEGNTL 105


>gi|237653584|ref|YP_002889898.1| flagellar hook capping protein [Thauera sp. MZ1T]
 gi|237624831|gb|ACR01521.1| flagellar hook capping protein [Thauera sp. MZ1T]
          Length = 224

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +I   V        +SK+  +   ++ FL LL TQ+K+QDP  PM+ +E  +QLA  S +
Sbjct: 9   DIAASVLAKINTREESKASASGDMNSRFLTLLTTQLKNQDPLNPMENAEVTSQLAQMSTV 68

Query: 61  EQSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98
           +   ++N   Q  +   +     QA++ +G+ +      ++
Sbjct: 69  DGIERLNKMFQSFVDGQSAYDSMQAAALVGRGVLVEGKKLT 109


>gi|86146156|ref|ZP_01064482.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
 gi|218708803|ref|YP_002416424.1| flagellar basal body rod modification protein [Vibrio splendidus
           LGP32]
 gi|85836103|gb|EAQ54235.1| flagellar basal body rod modification protein [Vibrio sp. MED222]
 gi|218321822|emb|CAV17791.1| Flagellar hook capping protein FlgD [Vibrio splendidus LGP32]
          Length = 236

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    ++  ++  K+ L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +
Sbjct: 20  SLQDGAKKPDETTGKQDLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 79

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114
           MN+  + L   + SN   QASS +G+++           DG ++ +V   Q     +  +
Sbjct: 80  MNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGVKQGDGGMASMVKLPQAMDNVMVRV 139


>gi|160939660|ref|ZP_02087008.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437451|gb|EDP15215.1| hypothetical protein CLOBOL_04552 [Clostridium bolteae ATCC
           BAA-613]
          Length = 233

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           +                  K +  D FL L++ Q+K+QD   P+  ++ V QLA  S M+
Sbjct: 73  DSTGSSGNVIDAVFGDGDDKKVSMDDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQ 132

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAI 114
           Q        +E+  +   +  +S +GKN++ A  ++S       GVV  I +   G   I
Sbjct: 133 QM-------EEMAYNAKSSYVASLVGKNVSAAKFTVSGELKKADGVVEKISLL-DGKFVI 184

Query: 115 TVDNTEIPITTGIRISN 131
            VD     +   + I +
Sbjct: 185 YVDGEAFSMDEIMEIKD 201


>gi|296534176|ref|ZP_06896666.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
           ATCC 49957]
 gi|296265496|gb|EFH11631.1| basal-body rod modification protein FlgD [Roseomonas cervicalis
           ATCC 49957]
          Length = 226

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               +  + + +K++      +FL LL TQ+++QDP +P  +SE   QLA FSQ+EQ + 
Sbjct: 11  SSANSTTQSATAKTQLGSDMQSFLTLLTTQLQNQDPMDPTDSSEFATQLAQFSQVEQQIA 70

Query: 66  MNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
            N+ L+ LL       L  ++  +G  +  +   I
Sbjct: 71  TNAHLESLLSLQQSASLLSSTGLVGNTVEVSSSQI 105


>gi|254519416|ref|ZP_05131472.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
 gi|226913165|gb|EEH98366.1| flagellar hook assembly protein FlgD [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 62/138 (44%), Gaps = 9/138 (6%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   T    T +     K  + + ++AFL +L  ++ + DP     +++ V Q+A F+ M
Sbjct: 5   INSYTGARATDRGTQIVKPGQDMDKNAFLTILSAELSNMDPMGNNDSTQYVTQMAQFASM 64

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSS---TGLTAITVD 117
           EQ   +N+T+     ++ + +  +   K++ +     +G+V ++  +S   T    +  +
Sbjct: 65  EQMTNLNTTMSSYAHNSMVGKGVTL--KSVDSEGKPYTGIVKSVTSTSAKTTISVEVNEN 122

Query: 118 NTEI----PITTGIRISN 131
              I     IT  + + +
Sbjct: 123 GNNIYKDFDITDVLTVLD 140


>gi|221069323|ref|ZP_03545428.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
 gi|220714346|gb|EED69714.1| flagellar hook capping protein [Comamonas testosteroni KF-1]
          Length = 220

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++     T      S +     QD FLKLL+ Q+ +QDP  PM  +E  +Q+A  + +  
Sbjct: 8   VDGTTTNTTSNTKNSVTDPNEAQDRFLKLLVAQLNNQDPMNPMDNAEMTSQMAQINTVTG 67

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
             Q+N T+  +        + Q +S IG+ +     ++
Sbjct: 68  IQQLNQTMASMSSQFSAMQVLQGTSMIGRTVLTEGNTL 105


>gi|238755325|ref|ZP_04616668.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
 gi|238706461|gb|EEP98835.1| Flagellar hook capping protein [Yersinia ruckeri ATCC 29473]
          Length = 229

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT      ++           Q++FL LL+ Q+K+QDPT P++ +E  +QLA  S ++  
Sbjct: 11  NTSAKLETKQTLGGAGSSEEMQNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQISTVQGI 70

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + SN   QAS+ +G  +     SI
Sbjct: 71  EKLNTTLGSISGQIDSNQSLQASALLGHGVMVPGNSI 107


>gi|226225730|ref|YP_002759836.1| putative flagellar basal-body rod modification protein FlgD
           [Gemmatimonas aurantiaca T-27]
 gi|226088921|dbj|BAH37366.1| putative flagellar basal-body rod modification protein FlgD
           [Gemmatimonas aurantiaca T-27]
          Length = 267

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
             +   +G+D FLK+L+ Q+K+QDP  PM   +  AQLA FS +EQ ++MN +L     +
Sbjct: 44  PTNPNGMGRDEFLKMLVAQLKNQDPLNPMDGKDMAAQLAQFSTVEQLLKMNESLDAQKSA 103

Query: 77  NNLAQAS 83
               + +
Sbjct: 104 TAEMKDA 110


>gi|319944136|ref|ZP_08018414.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
           51599]
 gi|319742630|gb|EFV95039.1| basal-body rod modification protein FlgD [Lautropia mirabilis ATCC
           51599]
          Length = 256

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                    +S     +D FLKLL+ Q+++QDP  PM+ +E  +QLA  S +     +N 
Sbjct: 46  ANPNVNKNDESTADGTEDRFLKLLVAQMRNQDPMNPMENAEVTSQLAQISTVRGIESLNK 105

Query: 69  TLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
           ++         N    + + IGK +        
Sbjct: 106 SMANFTASAAQNTALASVNMIGKKVLAPGERFE 138


>gi|120613058|ref|YP_972736.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
 gi|120591522|gb|ABM34962.1| flagellar hook capping protein [Acidovorax citrulli AAC00-1]
          Length = 216

 Score = 78.9 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I +         S S +     QD FLKLL+ Q+ +QDP  P+  ++  +Q+A  + +  
Sbjct: 6   IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
             Q+N ++Q + +        Q +  IG+++      ++
Sbjct: 66  IQQLNLSMQTMAEQFSTMQTLQGTMMIGRSVLTEGSKMT 104


>gi|332284018|ref|YP_004415929.1| flagellar basal body rod modification protein [Pusillimonas sp.
           T7-7]
 gi|330427971|gb|AEC19305.1| flagellar basal body rod modification protein [Pusillimonas sp.
           T7-7]
          Length = 228

 Score = 78.5 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
              + +   ++++ +   +G  QD FL LL+TQ+++QDP  PM  ++  +Q+A  S +  
Sbjct: 9   GSTDSSAMSYAQAGTNSLMGDTQDRFLTLLVTQLQNQDPLNPMDNAQVTSQIAQLSTVNG 68

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
             Q+N+TL  L   +  +   QA+  IGK +      IS
Sbjct: 69  INQLNTTLLALSGQMDVSQSMQAAGLIGKEVLVPGSKIS 107


>gi|326319096|ref|YP_004236768.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375932|gb|ADX48201.1| flagellar hook capping protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 216

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I +         S S +     QD FLKLL+ Q+ +QDP  P+  ++  +Q+A  + +  
Sbjct: 6   IGSTATVNTGSSSNSATDPAAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQMAQINTVTG 65

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
             Q+N ++Q +     +    Q +  IG+N+      ++
Sbjct: 66  IQQLNLSMQTMAEQFTTMQTLQGTMMIGRNVLTEGSKMT 104


>gi|85859174|ref|YP_461376.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
 gi|85722265|gb|ABC77208.1| flagellar hook capping protein [Syntrophus aciditrophicus SB]
          Length = 220

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +             + + K  G+D FLK+LI Q+++Q+P  P+  ++  AQLA FS +EQ
Sbjct: 4   VTNIGKAASAGSEGTSTNKLTGKDEFLKMLIAQLQNQNPLNPLDGTDFAAQLAQFSSLEQ 63

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG-LTAITVDN 118
              MNSTL+ L     + N   A++ IG+ ++       G +  +  SS     ++  D 
Sbjct: 64  LTNMNSTLESLSALQTTQNGIMAANLIGRQVSA--NQEGGNILTVTGSSANLSYSLAKDA 121

Query: 119 TEIPIT 124
            ++ + 
Sbjct: 122 KKVTVN 127


>gi|312882660|ref|ZP_07742397.1| flagellar basal body rod modification protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369621|gb|EFP97136.1| flagellar basal body rod modification protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 236

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           + +  ++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 25  KNKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNNQF 84

Query: 71  QEL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           + L   + SN   QASS +G+++           DGS++ +V   Q     +  +  
Sbjct: 85  ETLNASMTSNQALQASSLVGRDVLVPGASGVKTGDGSMAAMVKLPQSVDNLMVRVED 141


>gi|78776231|ref|YP_392546.1| flagellar hook capping protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78496771|gb|ABB43311.1| Flagellar hook capping protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 221

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   +      + +K K  LG+D F+KLL+ +++HQDPTEPM + + ++Q +  + +E 
Sbjct: 8   LNAATHAESAAANAAKDKTALGKDDFMKLLLVELQHQDPTEPMDSEKILSQTSQLATLEA 67

Query: 63  SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
           S   N  L EL  S + +Q     S IGK       +I+
Sbjct: 68  SENTNKALSELAASMSASQQFSTVSAIGKTADLGSNAIT 106


>gi|89068735|ref|ZP_01156121.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
           HTCC2516]
 gi|89045698|gb|EAR51760.1| flagellar hook assembly protein FlgD [Oceanicola granulosus
           HTCC2516]
          Length = 222

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKK---TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
           M +           + +             FLK+L  Q+ +QDP  PM +S  V QLA  
Sbjct: 1   MALTGITPAASATQTATTGSNAAMDSNYQNFLKMLTAQVTNQDPLAPMDSSTFVTQLAQL 60

Query: 58  SQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
           SQ+EQ+VQ N  L+ELL   +S         IGK +T A   IS
Sbjct: 61  SQVEQTVQSNGHLRELLAGVQSFGSMAEVQLIGKPVTYASDRIS 104


>gi|258404709|ref|YP_003197451.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692]
 gi|257796936|gb|ACV67873.1| flagellar hook capping protein [Desulfohalobium retbaense DSM 5692]
          Length = 227

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 3   INTEVNPTQQEFSKSKSKK--TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +N+ +     +  +    +  +LG+  FL LL+TQ+++QDP  P   +E  AQLA FS +
Sbjct: 7   VNSSLAAQSVQSPERTGSQDDSLGKMDFLNLLVTQLENQDPMNPSDPTEMTAQLAQFSSL 66

Query: 61  EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           EQ   ++ +++    +  +     A S +G+N+     + +     +Q+      A    
Sbjct: 67  EQLTNISESMEGLDAMKTAYEQNAALSMLGRNVQLEGNTFTFQNEPVQLGYNLERAAESV 126

Query: 118 NTEIPITTGIRI 129
             +I   +G  +
Sbjct: 127 EIQIMDASGKTV 138


>gi|311105934|ref|YP_003978787.1| basal-body rod modification protein FlgD [Achromobacter
           xylosoxidans A8]
 gi|310760623|gb|ADP16072.1| basal-body rod modification protein FlgD [Achromobacter
           xylosoxidans A8]
          Length = 232

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            Q  +   S     QD FLKLL+TQ+++QDP  PM+ +E  +QLA  S +E    + +T+
Sbjct: 16  AQTGANGSSTAQGLQDQFLKLLVTQLQNQDPLNPMQNAELTSQLAQISTVEGITNLKNTM 75

Query: 71  ---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
                 +  +    A + IGK +      I   V+A    +  +T   +D         I
Sbjct: 76  LAISGQIDVSQSMNAVAMIGKGVLIPGSKIKSGVDAANPEARVVTPYGLDLQGDAQKVQI 135

Query: 128 RISN 131
           RIS+
Sbjct: 136 RISD 139


>gi|197285511|ref|YP_002151383.1| basal-body rod modification protein [Proteus mirabilis HI4320]
 gi|194682998|emb|CAR43447.1| basal-body rod modification protein [Proteus mirabilis HI4320]
          Length = 264

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT +      +   K      +  FL LLITQ+++QDPT PM+ +E  +QLA  S +E  
Sbjct: 13  NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 72

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
             +N T+  ++     +   +A+S +   +  A   IS
Sbjct: 73  ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNEIS 110


>gi|148976393|ref|ZP_01813099.1| flagellar basal body rod modification protein D [Vibrionales
           bacterium SWAT-3]
 gi|145964216|gb|EDK29472.1| flagellar basal body rod modification protein D [Vibrionales
           bacterium SWAT-3]
          Length = 237

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    ++  ++  K+ L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +
Sbjct: 21  SLQDGAKKPDETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGK 80

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAIT 115
           MNS  + L   + SN   QASS +G+++             ++    G+ A+ 
Sbjct: 81  MNSQFESLNSSMTSNQALQASSLVGRDVLVPG------AAGVKQGDGGMAAMV 127


>gi|239817166|ref|YP_002946076.1| flagellar hook capping protein [Variovorax paradoxus S110]
 gi|239803743|gb|ACS20810.1| flagellar hook capping protein [Variovorax paradoxus S110]
          Length = 228

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + +N      S         +  FLKLL+TQ+ +QDP  PM+ +E  +QLA  S +    
Sbjct: 10  SGLNAATAASSAGNVSGADSEQRFLKLLVTQLNNQDPLNPMENAELTSQLAQMSTVSGIE 69

Query: 65  QMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
           ++N+ L  L+     N + QA+S IG N+ +   ++S
Sbjct: 70  RLNTALSGLVNQTGANQVLQAASLIGYNVLSPGNALS 106


>gi|121607562|ref|YP_995369.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
 gi|121552202|gb|ABM56351.1| flagellar hook capping protein [Verminephrobacter eiseniae EF01-2]
          Length = 236

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 10/121 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               +++ +  +  QD FLKLL+ Q+ +QDP  P+  ++  +Q+A  + +    Q+N T+
Sbjct: 34  TGAKAQAVTDPSAAQDRFLKLLVAQLNNQDPMNPLDNAQMTSQIAQINTVTGIQQLNQTM 93

Query: 71  QELLKSN---NLAQASSYIGKNITNADGSIS-------GVVNAIQVSSTGLTAITVDNTE 120
           Q +        + Q ++ +G+++     ++S       G  +  Q ++     I     +
Sbjct: 94  QRMAAQFDALQVMQGAALVGRSVMTEGSALSMAGKTGQGGFDLAQAATGVKVEIMTAGGQ 153

Query: 121 I 121
           +
Sbjct: 154 V 154


>gi|120597304|ref|YP_961878.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
 gi|146294551|ref|YP_001184975.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
 gi|120557397|gb|ABM23324.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
 gi|145566241|gb|ABP77176.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
          Length = 220

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V       +   +     ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E  
Sbjct: 8   NNPVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67

Query: 64  VQMNSTLQE---LLKSNNLAQASSYIGKNITNA-------DGSISGVV 101
             M         ++++  + Q++S IGKN             ++ G V
Sbjct: 68  EGMRKNQSNQMIMMENLGIVQSASLIGKNAMVPVSEFKLDGETVEGKV 115


>gi|83591886|ref|YP_425638.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574800|gb|ABC21351.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
          Length = 245

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK-- 75
           + K T   + FL LL +Q+K+QDP  PM ++E   QL  F+Q+EQ +  N  +++LL   
Sbjct: 24  RGKLTSDMNTFLTLLTSQLKNQDPLSPMDSTEFTNQLVQFAQVEQQINTNDNMEKLLAVS 83

Query: 76  -SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
            ++  A A  Y+GK +     ++  + +   V + GLTA   +
Sbjct: 84  GNSQAAMAVGYLGKYVEAES-TVVALQDGQAVFTYGLTAAADN 125


>gi|325921023|ref|ZP_08182905.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
 gi|325548505|gb|EGD19477.1| flagellar hook capping protein [Xanthomonas gardneri ATCC 19865]
          Length = 223

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T    S  K +++LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+
Sbjct: 15  STSSAASTKKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNT 74

Query: 69  ---TLQELLKSNNLAQASSYIGKNITNADGSI 97
                 + + S+ + + ++ +G N+      +
Sbjct: 75  KVGNFSDSMNSDQVLKGAALVGHNVLVPSAQV 106


>gi|167630296|ref|YP_001680795.1| flagellar hook capping protein, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167593036|gb|ABZ84784.1| flagellar hook capping protein, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 188

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           + +         +K KS   LG+D FLKLL+TQ+++QDP +PM+  E +AQ+A FS +E
Sbjct: 7  NVGSVYTAPAGTTTK-KSNSQLGKDDFLKLLVTQLRYQDPMKPMEDKEFIAQMAQFSSLE 65

Query: 62 QSVQMNSTLQELLKSNN 78
          Q   +    ++   S  
Sbjct: 66 QMKNIADGFEKFQSSQQ 82


>gi|21231398|ref|NP_637315.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66768549|ref|YP_243311.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188991642|ref|YP_001903652.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21113064|gb|AAM41239.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573881|gb|AAY49291.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733402|emb|CAP51603.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 221

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS-- 68
                 +K +  LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+  
Sbjct: 15  TTSSKVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 69  -TLQELLKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
               + + S+ + + ++ +G N+            GS  GVV A             + T
Sbjct: 75  GNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|283850851|ref|ZP_06368137.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
 gi|283573774|gb|EFC21748.1| flagellar hook capping protein [Desulfovibrio sp. FW1012B]
          Length = 235

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 6/91 (6%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
           LGQDAFL+LL+TQ+++QDP  PM   E VA+LA FS +EQ  ++N+ +  L        L
Sbjct: 28  LGQDAFLQLLVTQLQYQDPLNPMDDKEFVAELAQFSSLEQLTEINTGIDNLAIQGTQQQL 87

Query: 80  AQASSYIGKNITNADGSIS---GVVNAIQVS 107
             A ++IGK I     ++S   G  +A+  +
Sbjct: 88  LGAVNFIGKTIEATGNAVSLADGKASAVTFT 118


>gi|85060037|ref|YP_455739.1| putative flagellar hook formation protein FlgD [Sodalis
           glossinidius str. 'morsitans']
 gi|84780557|dbj|BAE75334.1| putative flagellar hook formation protein FlgD [Sodalis
           glossinidius str. 'morsitans']
          Length = 138

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ FL LL+ Q+++QDPT P+  +E   QLA  S +     +N+ L  +  S+   QA++
Sbjct: 32  QNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI--SSQNLQATT 89

Query: 85  YIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
            +G  +            A+  S  G  ++  D
Sbjct: 90  LVGHGVMVDGS------GAVYYSRNGEFSLNAD 116


>gi|256376466|ref|YP_003100126.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
 gi|255920769|gb|ACU36280.1| flagellar hook capping protein [Actinosynnema mirum DSM 43827]
          Length = 139

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +    T  + S   +  +LG DAFLKLL+ Q+K+QDP+ P  ++  +AQ A  + +++  
Sbjct: 10  STQATTPNQSSGQSALGSLGGDAFLKLLVAQLKYQDPSNPTDSTAFMAQTAQLTSVDKLN 69

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            +     +L+ S   AQA+  +G+ +   T +    SG+V++          + V   ++
Sbjct: 70  SIAQQQTQLVASQLSAQAAGLVGREVTYTTASGERASGIVSSTTF--GSAPTLRVGAVDV 127

Query: 122 PITTGIRIS 130
           P+++    S
Sbjct: 128 PLSSITGTS 136


>gi|302037612|ref|YP_003797934.1| flagellar hook capping protein FlgD (fragment) [Candidatus
          Nitrospira defluvii]
 gi|300605676|emb|CBK42009.1| Flagellar hook capping protein FlgD (fragment) [Candidatus
          Nitrospira defluvii]
          Length = 101

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MEIN---TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
          M+I+   T+  P       +   K LG+D FLKLL+TQ++HQDP +PM+  + VAQ A F
Sbjct: 6  MDISKVITQATPPDSSTPTTDGPKPLGKDDFLKLLVTQLQHQDPLKPMENEDFVAQTAQF 65

Query: 58 SQMEQSVQMNSTLQELLKSNNLAQA 82
          SQ+EQ  ++ S +++ +     AQ 
Sbjct: 66 SQLEQMSKLVSLMEKSVTLQENAQN 90


>gi|300722683|ref|YP_003711973.1| flagellar hook assembly initiation protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629190|emb|CBJ89786.1| flagellar biosynthesis; initiation of hook assembly [Xenorhabdus
           nematophila ATCC 19061]
          Length = 233

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+ V                 +D FL LL+ Q+K+QDPT PM+ +E   Q+A  S ++  
Sbjct: 13  NSTVGELASAAKIKPQSSDDIKDNFLNLLVAQLKNQDPTNPMQNNELTTQIAQISTVQGV 72

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N TL  +   +  N   Q +  I + +      I
Sbjct: 73  EKLNKTLGSIVGQMDHNQAMQTTLLINRGVMVPGDRI 109


>gi|330809243|ref|YP_004353705.1| flagellar hook capping protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377351|gb|AEA68701.1| Putative flagellar hook capping protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 140

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +       +   ++  LGQ+ F+KL +T++  QDP EP+   E +AQ+A F+ +EQ+  
Sbjct: 5   AIGNELSSTTSELAQSRLGQEDFIKLFLTELTFQDPLEPINNREFLAQMAQFANLEQTRI 64

Query: 66  MNSTLQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIP 122
            N     L+  N  +Q+   +G+ +  +    G+  G V AI  SSTG            
Sbjct: 65  TNENTDNLVSMNATSQSLGLLGRQVEVSITTGGTAIGSVTAIAFSSTGPVLSVKRTDGTV 124

Query: 123 ITTG 126
           +T  
Sbjct: 125 LTDV 128


>gi|293395582|ref|ZP_06639865.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
           4582]
 gi|291421901|gb|EFE95147.1| basal-body rod modification protein FlgD [Serratia odorifera DSM
           4582]
          Length = 229

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT             + + L  ++FL LL+ Q+K+QDPT PM+ +E  +QLA  + +   
Sbjct: 13  NTVAGVNANRSVGGNTSQDL-HNSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + SN   QAS+ IG  +      I
Sbjct: 72  EKLNTTLGAISGQINSNQSLQASALIGHGVMVPGKDI 108


>gi|254496886|ref|ZP_05109734.1| flagellar basal body rod modification protein [Legionella
           drancourtii LLAP12]
 gi|254353905|gb|EET12592.1| flagellar basal body rod modification protein [Legionella
           drancourtii LLAP12]
          Length = 224

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +            K LGQ  FL+L++ QI++QDP +P    E ++QLA FS  +   
Sbjct: 9   NGASNATTNQVAPLGAKNLGQQDFLRLMVAQIQNQDPMQPQVNGEFLSQLAQFSTNDGVS 68

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADG 95
           +M  ++Q++   L+SN   QAS+ +G+ +  +  
Sbjct: 69  KMQESMQQMANSLQSNQALQASALVGRKVLVSSD 102


>gi|255261779|ref|ZP_05341121.1| flagellar basal body rod modification protein [Thalassiobium sp.
          R2A62]
 gi|255104114|gb|EET46788.1| flagellar basal body rod modification protein [Thalassiobium sp.
          R2A62]
          Length = 220

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 1  MEINTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
          M+I+   +P Q         K + +   + FLK++  QI++QDP +P+ +++   QLA F
Sbjct: 1  MDISQLQSPGQLSSPAGEQIKPQISSDFETFLKMMTAQIENQDPLDPIDSADYAVQLATF 60

Query: 58 SQMEQSVQMNSTLQELLKSNNLAQASSY 85
          S +EQ V+ N  L  L     L+  +  
Sbjct: 61 SSVEQQVKTNDLLSALGGQLQLSGMAEM 88


>gi|170722893|ref|YP_001750581.1| flagellar basal body rod modification protein [Pseudomonas putida
           W619]
 gi|169760896|gb|ACA74212.1| flagellar hook capping protein [Pseudomonas putida W619]
          Length = 235

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
                 + +       LG+DAFL+LL+TQ++HQ+P +P +  E VAQLA FS +E    +
Sbjct: 23  TAKKATDTASKTGTDALGKDAFLQLLVTQMQHQNPLDPQENGEFVAQLAQFSSLEGITSL 82

Query: 67  NSTLQEL---LKSNNLAQASSYIGKNITNADGS 96
           N ++  +   + S+   QASS +G+++   +  
Sbjct: 83  NESVSSITNAMASSQALQASSLVGRSVVVQNDK 115


>gi|330447902|ref|ZP_08311550.1| flagellar hook capping family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492093|dbj|GAA06047.1| flagellar hook capping family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 225

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I +  +      + +     L ++ F+ L++ QI++QDP  P+  +E V QLA FSQ+E 
Sbjct: 16  IESSTSAVADNPNSANDANGL-KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVES 74

Query: 63  SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           +  M   +Q    LL +  +   +  +G+ +      + 
Sbjct: 75  TENMAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGNEVE 113


>gi|257095360|ref|YP_003169001.1| flagellar hook capping protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047884|gb|ACV37072.1| flagellar hook capping protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 225

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            ++   S + S     Q+ FLKLL+TQ+K+QDP  P+  +   +Q++  S +    ++N+
Sbjct: 18  NSKSGASDAMSTSEEVQNRFLKLLVTQLKNQDPLNPLDNAAVTSQISQISTVTGIEKLNT 77

Query: 69  TLQELLKSN---NLAQASSYIGKNITNADGSI 97
           TL+ LL +       QA+  +GK++  A   +
Sbjct: 78  TLETLLNTFNDGQSMQAAGLLGKSVLVAGSQL 109


>gi|114765240|ref|ZP_01444372.1| Flagellar hook capping protein [Pelagibaca bermudensis HTCC2601]
 gi|114542375|gb|EAU45403.1| Flagellar hook capping protein [Roseovarius sp. HTCC2601]
          Length = 223

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
              V       S S S+ +   ++F+ LL  QI++Q+P EPM ++  ++QLA  SQ+EQS
Sbjct: 8   TGNVTGAGTTASSSMSQLSEDYESFITLLTAQIQNQNPLEPMDSTTFISQLAQLSQVEQS 67

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           V +N  L+ +   L S +     + IG+++      +
Sbjct: 68  VAVNDNLEGISSQLSSMSAIAGLNLIGRSVVAPTEQL 104


>gi|89902476|ref|YP_524947.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
 gi|89347213|gb|ABD71416.1| flagellar hook capping protein [Rhodoferax ferrireducens T118]
          Length = 223

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 20  KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KS 76
                QD FLKLL+ Q+ +QDP  PM  ++  +Q+A  + +    Q+N TL+ +     S
Sbjct: 31  DANASQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQVNETLKSMAAQFTS 90

Query: 77  NNLAQASSYIGKNITNADGSIS 98
             + Q +S +G N+     +++
Sbjct: 91  LQVLQGASMVGHNVLVESNTLT 112


>gi|121997320|ref|YP_001002107.1| flagellar hook capping protein [Halorhodospira halophila SL1]
 gi|121588725|gb|ABM61305.1| flagellar hook capping protein [Halorhodospira halophila SL1]
          Length = 293

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
               +++G + FL+L++ Q+++QDPT+P    + + Q+A F+      Q+ S  +E    
Sbjct: 91  EGDPQSIGHEDFLELMMVQLQNQDPTDPQDTEQMMGQIAQFTTASGIEQLQSDFREFFEH 150

Query: 74  LKSNNLAQASSYIGKNITNAD 94
           ++S+   +AS  +G+ +    
Sbjct: 151 MRSDQSLRASQLVGREVVTES 171


>gi|126176157|ref|YP_001052306.1| flagellar hook capping protein [Shewanella baltica OS155]
 gi|125999362|gb|ABN63437.1| flagellar hook capping protein [Shewanella baltica OS155]
          Length = 220

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V       +   +     ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E  
Sbjct: 8   NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67

Query: 64  VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             M         ++++  + Q++S IGKN             A++       A    + E
Sbjct: 68  EGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAAEGLDLE 127

Query: 121 IPITTGIRIS 130
           I    G  +S
Sbjct: 128 IIDAQGQVVS 137


>gi|311694360|gb|ADP97233.1| flagellar hook capping protein [marine bacterium HP15]
          Length = 225

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 13/119 (10%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++ ++    QQ   +      LG++ F++L++ Q+K+Q+P EP +  E ++QLA FS +E
Sbjct: 11  DVLSQYQLKQQNGGQ--GTSELGRNEFMELMLAQLKNQNPLEPQENGEFISQLAQFSSLE 68

Query: 62  QSVQMNSTLQELL---KSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109
           +   ++ T+++++   +S    QAS+ +GK +          A+G I+G +     +  
Sbjct: 69  EMQNLSGTVEDVVGQFRSTQALQASAMVGKTVLAPSQIGILGAEGEITGTIQVPASTGG 127


>gi|78047587|ref|YP_363762.1| flagellar basal body rod modification protein [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78036017|emb|CAJ23708.1| flagellar hook capping protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 221

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               + +K ++ LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+ +
Sbjct: 15  STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
                 + S+ + + ++ +G N+            GS  GVV A             + T
Sbjct: 75  SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|269138581|ref|YP_003295281.1| flagellar basal body rod modification protein [Edwardsiella tarda
           EIB202]
 gi|267984241|gb|ACY84070.1| flagellar basal body rod modification protein [Edwardsiella tarda
           EIB202]
 gi|304558591|gb|ADM41255.1| Flagellar basal-body rod modification protein FlgD [Edwardsiella
           tarda FL6-60]
          Length = 232

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ ++ VN + +    + + + L Q++FL LL+ Q+++QDPT P++ +E   QLA  S +
Sbjct: 11  VDTSSPVNASSKSGLVADNGQDL-QNSFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-SGVVNAIQVSSTGLTAITV 116
               ++N+TL  +   + SN   QASS IG  +     +I +G     +  ST      +
Sbjct: 70  SGIEKLNTTLGSISGQINSNQSIQASSLIGHGVMIPGKTILTGKGEGDEKVSTTPFGFEL 129

Query: 117 DNTEIPITTGIRISN 131
           ++     +  + IS+
Sbjct: 130 ESG--AQSVVVTISD 142


>gi|58582194|ref|YP_201210.1| flagellar basal body rod modification protein [Xanthomonas oryzae
           pv. oryzae KACC10331]
 gi|84624087|ref|YP_451459.1| flagellar basal body rod modification protein [Xanthomonas oryzae
           pv. oryzae MAFF 311018]
 gi|188576755|ref|YP_001913684.1| flagellar basal body rod modification protein [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|188576946|ref|YP_001913875.1| flagellar basal body rod modification protein [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|58426788|gb|AAW75825.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368027|dbj|BAE69185.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521207|gb|ACD59152.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521398|gb|ACD59343.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 221

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                  K +++LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+ +
Sbjct: 15  STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 71  QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
                S +  Q    ++ +G N+            GS  GVV A    +        +  
Sbjct: 75  SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVTATSAGTVNFEITDANGA 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|260438801|ref|ZP_05792617.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
 gi|292808790|gb|EFF67995.1| flagellar hook capping protein [Butyrivibrio crossotus DSM 2876]
          Length = 149

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++     N T  + +K     +L +DAFL++L  ++++QDP EP   +E V+Q++ FSQ+
Sbjct: 8   IDGKVVANYTDGKANKKTGSDSLNKDAFLQILAAEMQYQDPLEPSSNTEWVSQMSSFSQI 67

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           E    ++ ++ E   SN + +       +       I+G V   +    G   +++++  
Sbjct: 68  ESLQTVSDSISEQGASNLVGKRVILEDTDSAGNKKYITGKVQCTEKI-NGKIYLSINDNL 126

Query: 121 IPITTGIRISN 131
                   + +
Sbjct: 127 YDYEKLYSVVD 137


>gi|126738592|ref|ZP_01754297.1| basal-body rod modification protein FlgD [Roseobacter sp.
           SK209-2-6]
 gi|126720391|gb|EBA17097.1| basal-body rod modification protein FlgD [Roseobacter sp.
           SK209-2-6]
          Length = 228

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T         S   +  T   D F+KLL  Q ++QDP EPM  +E  +QLA FS +EQ V
Sbjct: 12  TSTGANSSPASTGGTNLTSDFDTFIKLLTAQAQYQDPLEPMDNTEYASQLAEFSMVEQQV 71

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
             N+ L  +   L   N+A  + ++G  +     +     N + V+          N  +
Sbjct: 72  LTNTNLSTVHEQLGLGNMASLTGWVGMEVRAPAPAQFDGTNPVNVAPNPAARADEVNLIV 131

Query: 122 PITTGIRIS 130
             + G  ++
Sbjct: 132 RDSDGNEVN 140


>gi|21242728|ref|NP_642310.1| flagellar basal body rod modification protein [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|294625273|ref|ZP_06703912.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294664590|ref|ZP_06729931.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|21108204|gb|AAM36846.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292600447|gb|EFF44545.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292605647|gb|EFF48957.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 221

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               + +K +  LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+ +
Sbjct: 15  STSSTVAKKEDALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
                 + S+ + + ++ +G N+            GS  GVV A             + T
Sbjct: 75  SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|304412509|ref|ZP_07394115.1| flagellar hook capping protein [Shewanella baltica OS183]
 gi|307307168|ref|ZP_07586906.1| flagellar hook capping protein [Shewanella baltica BA175]
 gi|304349151|gb|EFM13563.1| flagellar hook capping protein [Shewanella baltica OS183]
 gi|306910407|gb|EFN40838.1| flagellar hook capping protein [Shewanella baltica BA175]
          Length = 220

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V       +   +     ++ F+ L+I QIK+QDPT+P+ ++E ++QLA FSQ+E  
Sbjct: 8   NNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESL 67

Query: 64  VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             M         ++++  + Q++S IGKN             A++       A    + E
Sbjct: 68  EGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAADGLDLE 127

Query: 121 IPITTGIRIS 130
           I    G  +S
Sbjct: 128 IIDAQGQVVS 137


>gi|329898290|ref|ZP_08272373.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC3088]
 gi|328920855|gb|EGG28298.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC3088]
          Length = 228

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
                  Q+    +  +  L +DAFL+L   Q+K Q+P +PMK    VAQLA FS +E  
Sbjct: 11  TESYMAQQRNAVYNNGEDDLDRDAFLQLFTAQLKSQNPLDPMKNEAFVAQLAQFSSVEGI 70

Query: 64  VQMNSTLQELLKS---NNLAQASSYIGKNI 90
             M ++L+ L+ +   ++L   SS +GK +
Sbjct: 71  KGMQASLETLVSNLRTDSLLTGSSLVGKKV 100


>gi|254420677|ref|ZP_05034401.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
 gi|196186854|gb|EDX81830.1| flagellar hook capping protein, putative [Brevundimonas sp. BAL3]
          Length = 238

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M             +   +      + FL LL TQ+K+QDP  P+ ++E  AQL   + +
Sbjct: 1  MATAVSSVDASGRLNSGTTMLASNFETFLTLLTTQMKNQDPLSPLDSNEFTAQLTQMAGV 60

Query: 61 EQSVQMNSTLQELL--KSNNLAQASSYIGKNITNA 93
          EQ +  N  L  L+  +S NL  A++YIGK +T A
Sbjct: 61 EQQLLTNDLLTSLVAAQSGNLNNAAAYIGKEVTAA 95


>gi|331006030|ref|ZP_08329372.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC1989]
 gi|330420159|gb|EGG94483.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC1989]
          Length = 239

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++ +    ++  +   S   LGQ AFL+L+ITQ+++QDP  P + SE +AQLA FS +E 
Sbjct: 14  LSIQTQQEEEAAAAEASGNELGQTAFLELMITQMENQDPLSPQENSEFIAQLAQFSSVEG 73

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSISGVVNAI 104
             ++N+          SN   QASS +G++++        V  ++
Sbjct: 74  LERLNTNFDSFTSSFISNQALQASSLVGRSVSVPSSKAELVEGSV 118


>gi|239906012|ref|YP_002952751.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
           magneticus RS-1]
 gi|239795876|dbj|BAH74865.1| flagellar basal-body rod modification protein FlgD [Desulfovibrio
           magneticus RS-1]
          Length = 232

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNL 79
           LG DAFL+LL+TQ+++QDP +PM   E VA+LA FS +EQ  ++N     L  L +   +
Sbjct: 27  LGMDAFLQLLVTQLQYQDPLDPMDDKEFVAELAQFSSLEQLTEINSGIEGLSTLTQEQQM 86

Query: 80  AQASSYIGKNITNADGSIS---GVVNAIQVS 107
             A ++IGK I     +++   G   ++  +
Sbjct: 87  IGAVNFIGKTIEANGTAVNVEDGAATSVTFT 117


>gi|85058010|ref|YP_453712.1| flagellar basal-body rod modification protein FlgD [Sodalis
           glossinidius str. 'morsitans']
 gi|84778530|dbj|BAE73307.1| flagellar basal-body rod modification protein FlgD [Sodalis
           glossinidius str. 'morsitans']
          Length = 269

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS---Q 59
           I+     T    ++S+  + L  D FL++++ QIK+QDPT PM  ++  +Q+A       
Sbjct: 50  ISDSRAATSAMDAQSQGTQEL-MDNFLQMMLAQIKNQDPTNPMDNNQLASQMAQMHVALG 108

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD 94
           +E+       +  ++ S      S+++G+ +    
Sbjct: 109 VEKLNNTVLGMGNMVNSVQAVNLSNWVGRTVLIVG 143


>gi|270262402|ref|ZP_06190673.1| flagellar basal body rod modification protein [Serratia odorifera
           4Rx13]
 gi|270043086|gb|EFA16179.1| flagellar basal body rod modification protein [Serratia odorifera
           4Rx13]
          Length = 225

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  ++ T    +   +     Q+ FL LL+ Q+K+QDPT PM+ +E   QLA  + ++  
Sbjct: 8   NESLDNTVTGVNAKSNTGQDLQNNFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVQGI 67

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + SN   QA++ IG  +     +I
Sbjct: 68  EKLNTTLGSISGQINSNQSLQATALIGHGVMVPGSNI 104


>gi|74101657|gb|AAZ99747.1| FlgDL [Aeromonas hydrophila]
          Length = 231

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
             ++ P      ++       ++ FL++++ QI++QDPT P+  ++ V QLA FS +E  
Sbjct: 21  TPDIAPNSAAAGQNPQGGMQLRNEFLQMMVAQIQNQDPTNPLDGAQYVTQLAQFSMVEGV 80

Query: 64  VQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
                +      ++ +  + Q+++ I K +     +++
Sbjct: 81  ESLKVLQQKSINMMDTQQVLQSTALIDKEVMVPSKTLT 118


>gi|261821152|ref|YP_003259258.1| flagellar basal body rod modification protein [Pectobacterium
           wasabiae WPP163]
 gi|261605165|gb|ACX87651.1| flagellar hook capping protein [Pectobacterium wasabiae WPP163]
          Length = 224

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T    T    +  K+     Q+ FL LL+ Q+K+QDPT PM   + V+QLA  + +    
Sbjct: 12  TRTQNTSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           ++N+TL  +   + +N   QA++ IG+++      I
Sbjct: 72  KLNTTLGSISGQINNNQSMQATTLIGRSVMVPGKEI 107


>gi|237799205|ref|ZP_04587666.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806224|ref|ZP_04592928.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022060|gb|EGI02117.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027337|gb|EGI07392.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    + + +   LG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 16  LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
              +  T+  +    KS+   QASS +G+++    GS S
Sbjct: 73  MQNLTKTVDTIAGSYKSSQALQASSLVGRSVIIDSGSTS 111


>gi|260429426|ref|ZP_05783403.1| flagellar basal body rod modification protein [Citreicella sp.
           SE45]
 gi|260420049|gb|EEX13302.1| flagellar basal body rod modification protein [Citreicella sp.
           SE45]
          Length = 222

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            +    S +K+  +   + FLK+L TQ+++QDP  P+  +E   QLA FS +EQ V  N 
Sbjct: 14  SSSNTASTNKTVLSPDFETFLKMLTTQMQNQDPLNPLDTTEYATQLATFSSVEQQVLTND 73

Query: 69  TLQEL---LKSNNLAQASSYIGKNITNADGSISG 99
            L+EL   +  N   + + +IGK   +      G
Sbjct: 74  LLKELTGVIGGNQFQELAGWIGKQALSDAPVFYG 107


>gi|295097204|emb|CBK86294.1| Flagellar hook capping protein [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 232

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLG-QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
          M ++T  + +    +           + F+KLL+ Q+++QDPT PM  ++  +QLA F+ 
Sbjct: 1  MTVSTVNDTSGNTSTYGTGSSAADLSEQFMKLLVAQMQNQDPTNPMDNNQLTSQLAQFNT 60

Query: 60 MEQSVQMNST---LQELLKSNNLAQASSYIGKNITNADG 95
               ++N++   +Q L+       A+S++G+ +     
Sbjct: 61 AAGVEKLNASVGNVQALMAQLGSMSAASWVGRGVLIEGD 99


>gi|332669197|ref|YP_004452205.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
 gi|332338235|gb|AEE44818.1| flagellar hook capping protein [Cellulomonas fimi ATCC 484]
          Length = 151

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              + T          K L + AFL LL+ Q+++QDP+ PM +S+ + Q    S ME  V
Sbjct: 9   GATSRTTDASGTKVPTKELDKQAFLDLLVAQLRNQDPSAPMDSSQLMTQTTQLSTMESLV 68

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            +  T +E         A+  +G+ +T    A  +  GVV A+  +   +  + + +T++
Sbjct: 69  ALADTQRESFALQMRMAAAQLVGQQVTWTDAAGATQKGVVTAVSYA-GSVPTVKIGDTDV 127

Query: 122 PITTGIRI 129
            +     +
Sbjct: 128 TLDAVSSV 135


>gi|325927874|ref|ZP_08189098.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
 gi|325541714|gb|EGD13232.1| flagellar hook capping protein [Xanthomonas perforans 91-118]
          Length = 221

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               + +K ++ LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+ +
Sbjct: 15  STSSTVAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 71  QEL---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
                 + S+ + + ++ +G N+            GS  GVV A             + T
Sbjct: 75  SNFSDSMNSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGFVNFEITDANGT 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|253996320|ref|YP_003048384.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
 gi|253982999|gb|ACT47857.1| flagellar hook capping protein [Methylotenera mobilis JLW8]
          Length = 224

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T ++    + + + +     QD F+KLL+TQ+++QDP  PM  ++  +Q+A  S +    
Sbjct: 13  TLLDAVNGKKNTTTTSVDAAQDRFMKLLVTQMRNQDPLNPMDNAQVTSQMAQLSTVTGID 72

Query: 65  QMNSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
           ++N+TL+ L+ +  + Q+   S+ IG+NI     ++ 
Sbjct: 73  KLNNTLETLINNVQMGQSYQASNMIGRNILTPGNTVE 109


>gi|33601540|ref|NP_889100.1| flagellar basal body rod modification protein [Bordetella
           bronchiseptica RB50]
 gi|33575976|emb|CAE33055.1| basal-body rod modification protein FlgD [Bordetella bronchiseptica
           RB50]
          Length = 234

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   T         + S S     QD FL LL+TQ+++QDP  PM+ +E  +QLA  S +
Sbjct: 4   VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63

Query: 61  EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           E    + +T+      +  +    A S IGK +      +S   +    +  G T   +D
Sbjct: 64  EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123

Query: 118 NTEIPITTGIRISN 131
                    +++ +
Sbjct: 124 LQGDATKVTVKVLD 137


>gi|168703390|ref|ZP_02735667.1| Flagellar hook capping protein [Gemmata obscuriglobus UQM 2246]
          Length = 120

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            S + +   +GQD FL+LLI Q+++QDP +P+   + + QLA  + +     +N+   E+
Sbjct: 2   ASGTSALAGVGQDQFLQLLIAQLQNQDPLDPVSNQDFIQQLATLNTVSGIQSLNANFSEM 61

Query: 74  LKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           LK   + Q +  +GK I      + + +G V ++Q S  G   + V + ++ +     +
Sbjct: 62  LKLQQITQGADLVGKTIEYTLTGEPAKTGKVTSVQ-SQDGKFVLQVGSDQVLLDQINSV 119


>gi|293605002|ref|ZP_06687398.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC
           43553]
 gi|292816607|gb|EFF75692.1| flagellar hook assembly protein FlgD [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
             +       Q  + +       QD FLKLL TQ+++QDP  PM+ +E  +QLA  + +E
Sbjct: 7   NTSAAGLAQAQSNANNSVTSQGLQDQFLKLLTTQLQNQDPLNPMQNAELTSQLAQIATVE 66

Query: 62  QSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
               + ST+Q +      +    A S IGK +      I   V+    +    T   +D 
Sbjct: 67  GISNLKSTIQAISGQIDVSQSMNAVSMIGKGVLIPGNKIKLGVDGDNAAERVATPYGLDL 126

Query: 119 TEIPITTGIRISN 131
                   IRI++
Sbjct: 127 QSDAQKVQIRIAD 139


>gi|227328337|ref|ZP_03832361.1| flagellar basal body rod modification protein [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 224

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
             V  T    +  K+     Q+ FL LL+ Q+K+QDPT PM   + V+QLA  + +    
Sbjct: 12  NSVQSTSSTTAIEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           ++N+TL  +   + +N   QA++ IG ++      I
Sbjct: 72  KLNTTLGSISGQINNNQSMQATTLIGHSVMIPGKDI 107


>gi|255523698|ref|ZP_05390664.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
 gi|296186701|ref|ZP_06855103.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
 gi|255512567|gb|EET88841.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
 gi|296048738|gb|EFG88170.1| flagellar hook capping protein [Clostridium carboxidivorans P7]
          Length = 235

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++    T +     K  + + ++AF K+L  ++ +QDP+     +E V+Q+A FS +EQ 
Sbjct: 18  DSNATKTSRGTRIVKKGQDMDKNAFFKILAAELSNQDPSNAKDGTEYVSQMAQFSSLEQM 77

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNI-----TNADGSISGVVNAIQVSSTGLTAITVDN 118
           V +N+T++       L  A++ IGK +            SG+V+++  S   +    +  
Sbjct: 78  VNLNTTMK-------LTGANNLIGKTVNLNKLDPNGKFYSGLVSSVVKSGDTVQLNVLVG 130

Query: 119 TE 120
           T+
Sbjct: 131 TK 132


>gi|166712063|ref|ZP_02243270.1| flagellar basal body rod modification protein [Xanthomonas oryzae
           pv. oryzicola BLS256]
          Length = 221

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                  K +++LGQ  FLKL+  Q++HQDP +PM+ S  + QLA FS ++    +N+ +
Sbjct: 15  STSSKTPKKEESLGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKV 74

Query: 71  QELLKSNNLAQA---SSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNT 119
                S +  Q    ++ +G N+            GS  GVV A    +        +  
Sbjct: 75  SNFSTSMSSDQVLKGAALVGHNVLVPSAQVAIDATGSAKGVVAATSAGTVNFEITDANGA 134

Query: 120 EIP 122
            + 
Sbjct: 135 FVK 137


>gi|114046837|ref|YP_737387.1| flagellar basal body rod modification protein [Shewanella sp. MR-7]
 gi|113888279|gb|ABI42330.1| flagellar hook capping protein [Shewanella sp. MR-7]
          Length = 256

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             Q        + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 44  PSQSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDE 103

Query: 69  --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117
              L  ++ S+   QAS  +G+         N++    ++SGVV+           +  D
Sbjct: 104 IVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDD 163

Query: 118 NTEIPITTGIRISN 131
             ++  T  I  S+
Sbjct: 164 KGQVVSTFNIDGSD 177


>gi|163733168|ref|ZP_02140612.1| flagellar basal-body rod modification protein, putative
          [Roseobacter litoralis Och 149]
 gi|161393703|gb|EDQ18028.1| flagellar basal-body rod modification protein, putative
          [Roseobacter litoralis Och 149]
          Length = 226

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 1  MEINTEVN---PTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
          M+I         TQ   +++ +   L    + FLK+L  Q + QDP EP+ +SE  AQLA
Sbjct: 1  MDILNAQAIQPTTQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA 60

Query: 56 VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89
           FS +EQ V  N  L EL   L SN++ Q +++IG  
Sbjct: 61 QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGME 97


>gi|157371208|ref|YP_001479197.1| flagellar basal body rod modification protein [Serratia
           proteamaculans 568]
 gi|157322972|gb|ABV42069.1| flagellar hook capping protein [Serratia proteamaculans 568]
          Length = 225

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 4/93 (4%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
           N      +K+ + + L  ++FL LL+ Q+K+QDPT PM+ +E  +QLA  + ++   ++N
Sbjct: 13  NSVIGANAKNNTSQDLN-NSFLTLLVAQLKNQDPTNPMQNNELTSQLAQINTVQGIEKLN 71

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +TL  +   + SN   QAS+ IG  +     +I
Sbjct: 72  TTLGSISGQINSNQSLQASALIGHGVMVPGSNI 104


>gi|157373208|ref|YP_001471808.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
 gi|157315582|gb|ABV34680.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
          Length = 221

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 8/138 (5%)

Query: 1   MEINTEVNPTQQEFSKS-----KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M +N+  N +  + +        +     ++ F+ L+I QI++QDPT P+ ++E V QLA
Sbjct: 1   MNVNSTTNSSGNDNTSDVMNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDSTEYVTQLA 60

Query: 56  VFSQMEQSVQM---NSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLT 112
            FSQ+E   QM    ST   ++++  + Q++  IGK+       ++     +        
Sbjct: 61  QFSQVESLEQMRLNQSTQMVMMENLGIVQSAQLIGKDAMVPASEVTLDTETVHGKVYTGN 120

Query: 113 AITVDNTEIPITTGIRIS 130
           A+   + +I   +G  +S
Sbjct: 121 AVEELSIDIMDESGEVVS 138


>gi|328542761|ref|YP_004302870.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
 gi|326412507|gb|ADZ69570.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
          Length = 220

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 5/100 (5%)

Query: 2   EINTEVNPTQQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           E+ +  + +    S SKS++TL    D FL LL TQIK+QDP +P+  ++   QL  +S 
Sbjct: 3   EVGSTTSASATTSSSSKSRETLLGSYDLFLTLLTTQIKNQDPLDPLDTAQFTNQLVQYSS 62

Query: 60  MEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGS 96
           +EQS+  N+ L++L+    S   +   SY+G  +T +  +
Sbjct: 63  VEQSILTNTYLEQLMASVKSGQASGYVSYLGAEVTASGDT 102


>gi|209963570|ref|YP_002296485.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
           centenum SW]
 gi|209957036|gb|ACI97672.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
           centenum SW]
          Length = 219

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +     Q     +  +      +FLKLL  Q+ +QDP  P+ A++ V QLA FS +EQ+V
Sbjct: 8   SAAGSQQTTADVASVRLAQDTQSFLKLLTAQLANQDPMAPIDATQFVTQLAQFSSVEQAV 67

Query: 65  QMNSTLQELLKSNNLAQ---ASSYIGKNITNADG 95
           Q N+ L E+L     +      +Y+G+ +     
Sbjct: 68  QSNTRLAEVLGELRSSSERLDLAYVGRTVEIESD 101


>gi|86139469|ref|ZP_01058038.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
 gi|85823972|gb|EAQ44178.1| basal-body rod modification protein FlgD [Roseobacter sp. MED193]
          Length = 231

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N          +   +  T   D F+KLL  Q K+QDPTEPM  +E  +QLA FS +EQ 
Sbjct: 9   NYNTATANSASAGGGTNLTSDFDTFIKLLTAQAKYQDPTEPMDNTEYASQLAEFSMVEQQ 68

Query: 64  VQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           V  N  L   L+     N+A  + ++G  +  A  +       + VS     A       
Sbjct: 69  VLTNDNLGSALEQLGLGNMAALTGWVGMEVRAATAASFDGTTPVNVSPNPAAAADEVTLV 128

Query: 121 IPITTGIRIS 130
           +    G  ++
Sbjct: 129 VRNADGDEVN 138


>gi|119503643|ref|ZP_01625726.1| Flagellar hook capping protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460705|gb|EAW41797.1| Flagellar hook capping protein [marine gamma proteobacterium
           HTCC2080]
          Length = 239

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             E  K+ S + +G + FL+L+I Q+++QDPT+PM     ++QLA F+Q+    ++N + 
Sbjct: 24  AAEKGKAGSAEEMGSEEFLQLMIAQLENQDPTKPMDQMAFMSQLAQFTQVSGIQELNESF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITNADG 95
             L   L      QAS  +G++++ +  
Sbjct: 84  SGLTETLTGQQALQASQMVGRSVSTSSN 111


>gi|92114099|ref|YP_574027.1| flagellar basal body rod modification protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91797189|gb|ABE59328.1| flagellar hook capping protein [Chromohalobacter salexigens DSM
           3043]
          Length = 235

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +      N + +  +          + F+ LLITQ+++QDPT+PM  S+  AQLA  + +
Sbjct: 14  INSTPNANASNETRTTGAESSEDLNNRFMTLLITQLQNQDPTKPMDNSDMTAQLAQINTV 73

Query: 61  EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSI----SGVVNAIQVSSTGLTA 113
               ++N +L    E + +    QASS IG+ +     ++    +     +        A
Sbjct: 74  SGIQELNDSLGDINEQIDAGKTLQASSLIGQGVMVPGSTVRVGETEDGGVVATPLGAELA 133

Query: 114 ITVDNTEIPITTG 126
              D  EI IT G
Sbjct: 134 TGADELEITITNG 146


>gi|91791428|ref|YP_561079.1| flagellar hook capping protein [Shewanella denitrificans OS217]
 gi|91713430|gb|ABE53356.1| flagellar hook capping protein [Shewanella denitrificans OS217]
          Length = 135

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M+I +    +    +   +   +  D FL+L + Q+ +QDP EP+  SE +AQLA FS +
Sbjct: 1   MDIQSIGGNSYATTNPQTN---IKLDDFLQLFVAQLNYQDPLEPVNNSEFLAQLAQFSSL 57

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNI---TNADGSISGVVNAIQVSSTGLTAITVD 117
           E + Q N     LL   +  QA   IG+++   T +  +  G V  +  +  G       
Sbjct: 58  EINRQSNDNSLSLLAIGSSDQALGLIGRSVEVNTQSGQAFIGDVTGVNFTQQGPMLTVKG 117

Query: 118 NTEIPITTG 126
             +  +T  
Sbjct: 118 ADDSLLTDI 126


>gi|88811800|ref|ZP_01127054.1| flagellar basal body rod modification protein [Nitrococcus mobilis
           Nb-231]
 gi|88791191|gb|EAR22304.1| flagellar basal body rod modification protein [Nitrococcus mobilis
           Nb-231]
          Length = 221

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 13/133 (9%)

Query: 1   MEINTEVNPTQQEFSKSKSK--KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           ++++          +++       + QD FLK+++ Q+++Q+P +PM   E + Q+A F+
Sbjct: 2   IDLSALTGNGIGGTAQAPKPATNEVSQDDFLKMMVAQLQNQNPLKPMSNGEFLTQIAQFT 61

Query: 59  QMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITN--------ADGSISGVVNAIQVS 107
                 Q+ S+ Q    +       QA+S +G+ +          A G++   V+     
Sbjct: 62  SASGIEQLQSSFQAFQTNMQSNLALQAASLVGRQVVVQSEQGYLPAGGTMDATVHLPSAV 121

Query: 108 STGLTAITVDNTE 120
                A+  +  +
Sbjct: 122 RNLTVAVLDEAGQ 134


>gi|197104254|ref|YP_002129631.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
 gi|196477674|gb|ACG77202.1| flagellar hook assembly protein [Phenylobacterium zucineum HLK1]
          Length = 230

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M +      T    +  +++     D FL LL TQ+K+QDP  P+ +++   Q+   + +
Sbjct: 1  MAVGGVSGITD-TSAIGRTRLAESFDTFLALLTTQLKNQDPLSPLDSNQFTQQIVQMTGV 59

Query: 61 EQSVQMNSTLQELL--KSNNLAQASSYIGKNITNAD 94
          EQ +  N  L+ L+   SN ++ A S IGK +  A 
Sbjct: 60 EQQLLTNDLLKSLVSNTSNGVSTAVSLIGKEVRAAT 95


>gi|329890334|ref|ZP_08268677.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845635|gb|EGF95199.1| flagellar hook capping family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 246

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N      +            FL LL TQ+K+QDP  P+ ++E  AQL   + +EQ + 
Sbjct: 6   SSNNAAGRVNAGGQMLASNFQTFLSLLTTQLKNQDPLSPVDSNEFTAQLTQMAGVEQQLL 65

Query: 66  MNSTLQELLKSNN---LAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAIT 115
            N  L  LLK+     L  A+ YIGK+ T         DG  +        ++     + 
Sbjct: 66  TNDLLTGLLKAQQGDGLTGAAQYIGKDATAVWAATRFEDGEANWSYELAADATDATLQVL 125

Query: 116 VDNTEIPIT 124
             + ++  +
Sbjct: 126 DASGKVVWS 134


>gi|157376217|ref|YP_001474817.1| flagellar basal body rod modification protein [Shewanella sediminis
           HAW-EB3]
 gi|157318591|gb|ABV37689.1| flagellar hook capping protein [Shewanella sediminis HAW-EB3]
          Length = 282

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            ++      + + L Q+ F  LL  Q+  QDP +P+   + ++Q+A FS ++    +N  
Sbjct: 58  PEESSIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMISQMASFSTVDGIKNLNDE 117

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +       +G ++A   S  G+ +       I + 
Sbjct: 118 IVNLNSVMTSSQALQASGLVGQKVLIPSD--TGYISAEDPSINGIISTPEAIDTITVR 173


>gi|90408059|ref|ZP_01216230.1| flagellar basal body rod modification protein [Psychromonas sp.
           CNPT3]
 gi|90310816|gb|EAS38930.1| flagellar basal body rod modification protein [Psychromonas sp.
           CNPT3]
          Length = 232

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 1   MEINTEVNPTQQEFSKS-KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           + +N  + P Q   +K    K+ L Q+ F  LL  Q+ +QDP +P+  SE +AQ+A F+ 
Sbjct: 10  LNLNKPLTPEQVSANKDVDKKQQLEQEDFFALLSQQLAYQDPFKPVDNSEMIAQMASFTT 69

Query: 60  MEQSVQMNS---TLQELLKSNNLAQASSYIGKNITNADGS 96
            E   +M +    L+ +L S+   +ASS +GK +     +
Sbjct: 70  AEGITKMGNEFAGLKGVLSSSQALEASSLVGKKVLIPSDT 109


>gi|238796903|ref|ZP_04640407.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
 gi|238719163|gb|EEQ10975.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
          Length = 237

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +    N   ++ + + S      ++F+ LL+ Q+++QDPT PM  ++  +QLA FS    
Sbjct: 6   VMNSNNAAPKDGASNGSNPEDLTNSFMTLLVAQMQNQDPTNPMDNNQLTSQLAQFSTASG 65

Query: 63  SVQMNST---LQELLKSNNLAQASSYIGKNITNADGS 96
             Q+NST   +  L+ S     A+ ++G+ +     S
Sbjct: 66  VQQLNSTVMAVGSLVTSMQQMNAADWVGRQVWIEGDS 102


>gi|220913725|ref|YP_002489034.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
 gi|219860603|gb|ACL40945.1| flagellar hook capping protein [Arthrobacter chlorophenolicus A6]
          Length = 138

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
               Q   +  +  ++L  D F+KLL+TQ+K+QDP  PM  ++ +AQ    S ME+  ++
Sbjct: 8   AATLQTGNAARQPVQSLDSDTFMKLLVTQLKYQDPGAPMDTNQMMAQSVQLSMMEKMTEL 67

Query: 67  NSTLQELLKSNNLAQASSYIGKNI--TNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           ++  +E         A+  +G  +  T  DG+    + +    +TG+  +TV N+++P+ 
Sbjct: 68  STGAKESFSLQMRTAAAQIVGSEVAYTLPDGTAGSGIASAVSFTTGVPVVTVGNSKVPLD 127

Query: 125 TGIRIS 130
           +   IS
Sbjct: 128 SISGIS 133


>gi|33592478|ref|NP_880122.1| flagellar basal body rod modification protein [Bordetella pertussis
           Tohama I]
 gi|33572124|emb|CAE41666.1| basal-body rod modification protein FlgD [Bordetella pertussis
           Tohama I]
 gi|332381895|gb|AEE66742.1| flagellar basal body rod modification protein [Bordetella pertussis
           CS]
          Length = 234

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   T         + S S     QD FL LL+TQ+++QDP  PM+ +E  +QLA  S +
Sbjct: 4   VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63

Query: 61  EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           E    + +T+      +  +    A S IGK +      +S   +    +  G T   +D
Sbjct: 64  EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGID 123

Query: 118 NTEIPITTGIRISN 131
                    +++ +
Sbjct: 124 LQGDATKVTVKVLD 137


>gi|307944134|ref|ZP_07659475.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
 gi|307772480|gb|EFO31700.1| flagellar hook capping protein [Roseibium sp. TrichSKD4]
          Length = 219

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +    +      + +    +   + FL LL TQI++QDP +P+ ++E   QL  +S +EQ
Sbjct: 4   VTGATSAASSGTTSASQSLSSNYELFLSLLTTQIQYQDPLDPLDSAEYTKQLVQYSSVEQ 63

Query: 63  SVQMNSTLQELLKSNNLAQ---ASSYIGKNITNADGSIS 98
           ++Q N  L +++++    Q     +YIG +IT + G+ +
Sbjct: 64  AIQSNQHLAKMVEAMQAGQASSYVNYIGSDITASGGTAT 102


>gi|317133482|ref|YP_004092796.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
 gi|315471461|gb|ADU28065.1| flagellar hook capping protein [Ethanoligenens harbinense YUAN-3]
          Length = 156

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 S   S  T G   F  L+  Q+++QDP EP   S+ +AQ+A FS +EQ+ +   
Sbjct: 14  AASSTLSTDDSSSTFGMSDFFTLMTKQLEYQDPLEPTDNSQFMAQMAQFSMVEQTQK--- 70

Query: 69  TLQELLKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
               L ++  +   ++ +GK++        T    +  GVV A+  S +      ++   
Sbjct: 71  ----LAQTAGIQAGTAMVGKDVLYTTTDASTGVSATSEGVVQAVDFSDSSTPQCYINGGW 126

Query: 121 IPITTGIRISN 131
           +P+T   R+++
Sbjct: 127 VPLTDVTRVTS 137


>gi|50120638|ref|YP_049805.1| flagellar basal body rod modification protein [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611164|emb|CAG74610.1| basal-body rod modification protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 224

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +         +  K+     Q+ FL LL+ Q+K+QDPT PM   + V+QLA  + +    
Sbjct: 12  SSTQGLSSTTAVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIE 71

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           ++N+TL  +   + +N   QAS+ IG ++      I
Sbjct: 72  KLNTTLGSISGQINNNQSMQASTLIGHSVMIPGKDI 107


>gi|294679045|ref|YP_003579660.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
 gi|294477865|gb|ADE87253.1| flagellar hook capping protein [Rhodobacter capsulatus SB 1003]
          Length = 225

 Score = 76.2 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80
               FLKLL TQ+ +QDPT PM +++   QLA FSQ+EQ V+ N+ L  L        ++
Sbjct: 32  DYQMFLKLLTTQMTNQDPTSPMDSADYAVQLATFSQVEQQVKTNTLLTSLATQMGVMGMS 91

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           + ++++G    +         N + +S   +         +    G  +S
Sbjct: 92  EYANWVGMEARSESPGYFDGTNPVTISPNPVKGADATTVVVSDAAGNEVS 141


>gi|307546969|ref|YP_003899448.1| flagellar basal body rod modification protein [Halomonas elongata
           DSM 2581]
 gi|307218993|emb|CBV44263.1| flagellar basal body rod modification protein [Halomonas elongata
           DSM 2581]
          Length = 230

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T           +  + +  ++ F+ LL+TQ+++QDP  PM   +  +QLA  + +    
Sbjct: 10  TSTLNGGGSAGLNAGQSSALRENFMTLLVTQLQNQDPLNPMDNHQTTSQLAQINTVSGIE 69

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           ++N +L E+   + +    QAS  IGK +      +
Sbjct: 70  KLNDSLSEINGQIDAGQSLQASGLIGKGVLVPGNRV 105


>gi|148269403|ref|YP_001243863.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
 gi|147734947|gb|ABQ46287.1| flagellar hook capping protein [Thermotoga petrophila RKU-1]
          Length = 224

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79
           L ++AFL+LL+ +++ QDP EPM+  + ++QL+  + +EQ   + S +++ +++      
Sbjct: 27  LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLASLEQITNLTSAVKDFVEAQTSVNP 86

Query: 80  AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129
           AQ +S IGK +   + +++   G  ++I  +      + V     +   +       +
Sbjct: 87  AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVVQILDENGKVVRTEDLGTV 144


>gi|218133667|ref|ZP_03462471.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991042|gb|EEC57048.1| hypothetical protein BACPEC_01536 [Bacteroides pectinophilus ATCC
           43243]
          Length = 199

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NTE        +       L +DAFL+LL+ ++++QDP EP   +E VAQLA F+Q+E+
Sbjct: 12  LNTEATSIYHSTTDKSYDNGLDKDAFLQLLVAEMQNQDPLEPSSNTEYVAQLATFTQVEE 71

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
              M +++ +   +  + +         +     + GVV+ I V+S G T + ++ +   
Sbjct: 72  MQNMANSMAQNQANALVGKTVIMNTITASGTTSYVGGVVDRI-VNSNGKTYVGINGSLYD 130

Query: 123 ITTGIRISN 131
           I     I N
Sbjct: 131 INDLNSILN 139


>gi|77359721|ref|YP_339296.1| flagellar basal body rod modification protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874632|emb|CAI85853.1| flagellar biosynthesis; initiation of hook assembly
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 225

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 2   EINTEVNP------TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           +I+T  +        +++ +       L Q+ F  LL  Q+  QDP++P    + +AQ+ 
Sbjct: 4   DISTSSSYLDSLRWQEKQAASKDKSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMT 63

Query: 56  VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            F+  E    +NS  + L   + SN+  QAS+ +GK       ++
Sbjct: 64  SFTMAEGISNLNSNFEALAASMTSNSALQASTLVGKQALLESDTL 108


>gi|88704307|ref|ZP_01102021.1| flagellar basal-body rod modification protein FlgD [Congregibacter
           litoralis KT71]
 gi|88701358|gb|EAQ98463.1| flagellar basal-body rod modification protein FlgD [Congregibacter
           litoralis KT71]
          Length = 232

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
            T      + S   +  + FL L++ ++++QDPT P   S+ + QLA F  +    ++N+
Sbjct: 14  STPLGNEAANSIDEMDAEDFLALMVAELENQDPTNPNSNSDMMGQLAQFGTVSGIDELNA 73

Query: 69  T---LQELLKSNNLAQASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTE 120
           +   L   L      QA+S +G+++      G ++G  NA       L A       
Sbjct: 74  SFGGLSSALTGGQALQAASLVGRSVMTDSNLGQLTGAANAQGEVEYSLDATVDFGDS 130


>gi|253702501|ref|YP_003023690.1| flagellar hook capping protein [Geobacter sp. M21]
 gi|251777351|gb|ACT19932.1| flagellar hook capping protein [Geobacter sp. M21]
          Length = 221

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
           K    + +D FLKL +TQ+++QDP  P   ++ ++QLA  +Q+EQ+   NS LQ +L   
Sbjct: 19  KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78

Query: 75  KSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
            ++    A + IGK +      +     +  
Sbjct: 79  SNSATLAAVTLIGKQVEAPGSQLELKSGSPS 109


>gi|170288060|ref|YP_001738298.1| flagellar hook capping protein [Thermotoga sp. RQ2]
 gi|281411900|ref|YP_003345979.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
 gi|170175563|gb|ACB08615.1| flagellar hook capping protein [Thermotoga sp. RQ2]
 gi|281373003|gb|ADA66565.1| flagellar hook capping protein [Thermotoga naphthophila RKU-10]
          Length = 224

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79
           L ++AFL+LL+ +++ QDP EPM+  + ++QL+  + +EQ   + S +++ +++      
Sbjct: 27  LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVNP 86

Query: 80  AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129
           AQ +S IGK +   + +++   G  ++I  +      + V     +   +       +
Sbjct: 87  AQLASLIGKYVVVKNNTVNLVDGQSDSIIFNVDEDAHVVVQILDENGKVVRTEDLGTV 144


>gi|292489134|ref|YP_003532021.1| basal-body rod modification protein FlgD [Erwinia amylovora
          CFBP1430]
 gi|292900253|ref|YP_003539622.1| basal-body rod modification protein [Erwinia amylovora ATCC
          49946]
 gi|291200101|emb|CBJ47227.1| basal-body rod modification protein [Erwinia amylovora ATCC
          49946]
 gi|291554568|emb|CBA22182.1| Basal-body rod modification protein flgD [Erwinia amylovora
          CFBP1430]
 gi|312173292|emb|CBX81547.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
          BAA-2158]
          Length = 226

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M ++   N          S       +F+ LLI Q+++QDPT PM  ++  +QLA F+  
Sbjct: 1  MSVSPVNNTRGPGQVDMGSSAADLSGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60

Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95
              ++N ++     +L       A+S++G+ +  A  
Sbjct: 61 SGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98


>gi|308050373|ref|YP_003913939.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
 gi|307632563|gb|ADN76865.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
          Length = 228

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 12/124 (9%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            +    +S + + L Q+ F  LL  Q+  QDP +P+   + ++Q++ F+ ++    +N  
Sbjct: 16  QESAVPESNANQALTQEDFFSLLSQQLSMQDPMKPVDNDQMISQMSSFATVDGINNLNDE 75

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADG---------SISGVVNAIQVSSTGLTAITVD 117
             TL  ++ SN   QAS  +G+ +               ++GVV+A   +   +  +   
Sbjct: 76  IQTLNSVMTSNQALQASGLVGQKVLIPSNVGHLGDAGTPVTGVVSAPTGTQNLMVRVEDS 135

Query: 118 NTEI 121
             ++
Sbjct: 136 TGQV 139


>gi|119775451|ref|YP_928191.1| flagellar basal body rod modification protein [Shewanella
           amazonensis SB2B]
 gi|119767951|gb|ABM00522.1| flagellar hook capping protein [Shewanella amazonensis SB2B]
          Length = 242

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +E      K+ L Q+ F  LL  Q+  QDP +P++  + +AQ+A FS ++    +N  
Sbjct: 30  QTKEAVPEAKKQELTQEDFFALLSQQLSMQDPFKPVENDQMIAQMASFSTVDGIANLNDH 89

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +     S SG V+A + +  G+ + +     I + 
Sbjct: 90  IVNLNTVMTSSQALQASGLVGQKVLIP--SASGHVSAEEPNLKGVISTSKPIETIMVR 145


>gi|163856434|ref|YP_001630732.1| flagellar basal body rod modification protein [Bordetella petrii
           DSM 12804]
 gi|163260162|emb|CAP42464.1| basal-body rod modification protein FlgD [Bordetella petrii]
          Length = 231

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 3   INTEVNPTQQEFSKS---KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           +N   + T    ++S    +     QD FL LL+TQ+K+QDP  PM+ +E  +QLA  S 
Sbjct: 4   VNNSTDSTGLALAQSGVGANSAQSLQDRFLTLLVTQLKNQDPLNPMENAELTSQLAQIST 63

Query: 60  MEQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITV 116
           +E    + +TL      +  +    A S IGK +      IS   +A   S    T   +
Sbjct: 64  VEGITNLKNTLLAISGQIDVSQSMNAVSMIGKGVLIPGEKISLGTDASDPSKRVATPFGI 123

Query: 117 DNTEIPITTGIRISN 131
           D         ++I +
Sbjct: 124 DLQGDAAKVSVKILD 138


>gi|254463880|ref|ZP_05077291.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
 gi|206684788|gb|EDZ45270.1| flagellar hook capping protein [Rhodobacterales bacterium Y4I]
          Length = 225

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 6  EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               Q   ++  S  T   + F+K+L  Q  +QDP EP+ ++E  AQLA FS +EQ  +
Sbjct: 13 AHTSQQPAATQKTSGLTSDFETFVKMLTAQATNQDPLEPLDSTEYAAQLAQFSMVEQQTK 72

Query: 66 MNSTLQELLKSNNLAQASSYIG 87
           N+ L+ L     LA  ++  G
Sbjct: 73 SNTLLEGLQSQLGLANMAALSG 94


>gi|70731824|ref|YP_261566.1| flagellar basal body rod modification protein [Pseudomonas
           fluorescens Pf-5]
 gi|68346123|gb|AAY93729.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
           Pf-5]
          Length = 242

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT  +      + +  K++LG+DAFLKLL+TQ+ +Q+P +P   S  VAQLA FS +E  
Sbjct: 25  NTSADGLAAATNSATGKQSLGKDAFLKLLVTQLNNQNPLDPQDNSAFVAQLAQFSTLEGI 84

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             +NS++  +    KS+   QASS +G+++    G+   V  +  ++ +     +V++  
Sbjct: 85  TTLNSSVNAITGNYKSSQALQASSLVGRSVIVQTGTTQ-VDTSKSMTGSVTVPSSVNSVT 143

Query: 121 IPITT 125
           + +T 
Sbjct: 144 VTVTD 148


>gi|308050025|ref|YP_003913591.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
 gi|307632215|gb|ADN76517.1| flagellar hook capping protein [Ferrimonas balearica DSM 9799]
          Length = 222

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                   + + + +  T  ++ FL L++ QI++QDP  P+  +E V QLA FSQ+E   
Sbjct: 11  GTQTSADPQVTNNPNSSTALKNEFLTLMVAQIQNQDPLNPLDGTEYVTQLAQFSQVESLE 70

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAI 104
            +    Q    L+++  +   ++ IG+ +     S+    + +
Sbjct: 71  HLRLGQQNQAILMENLQVLGTTNLIGREVLVDADSVELGTDTV 113


>gi|78485813|ref|YP_391738.1| flagellar hook capping protein [Thiomicrospira crunogena XCL-2]
 gi|78364099|gb|ABB42064.1| Flagellar hook capping protein FlgD [Thiomicrospira crunogena
           XCL-2]
          Length = 227

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                  +   + LGQ  FL+LL TQ+++QDP +PM  +  V  L   SQ+E + +MN +
Sbjct: 19  QSTNGKSNAPDQQLGQADFLRLLTTQLQNQDPNKPMDPTNFVTDLTQMSQLEATTKMNQS 78

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSIS 98
           +  +   L++  + Q++S IGKN+     ++S
Sbjct: 79  MLAMTTGLQNMQVMQSASLIGKNVQAIGDTMS 110


>gi|182418374|ref|ZP_02949669.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
 gi|237666720|ref|ZP_04526705.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377756|gb|EDT75300.1| flagellar hook assembly protein FlgD [Clostridium butyricum 5521]
 gi|237657919|gb|EEP55474.1| flagellar hook capping protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 308

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +   +  T +  +   S   LGQ+AFL +L+ ++ + DPT+   ++  V Q+A F+ +EQ
Sbjct: 5   VTNALGYTDRGTAIISSNTELGQNAFLNILVAELSNMDPTKDQDSTAYVTQMAEFASIEQ 64

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
              +N+T++       + Q +    K+      +  G++  +  S T   A  +D +   
Sbjct: 65  LNNLNTTMKNFSYQQMVGQVAILNDKD--TDGNNKFGLITQVFKSGTSTYATVLDASTGT 122

Query: 123 ITT 125
            + 
Sbjct: 123 YSN 125


>gi|83859392|ref|ZP_00952913.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852839|gb|EAP90692.1| flagellar hook assembly protein FlgD [Oceanicaulis alexandrii
           HTCC2633]
          Length = 242

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           + +      D FL LL  Q+K+QDP +P+++ + V QL  FS +EQ +  N +L+ LL  
Sbjct: 20  ATAGLADNFDTFLTLLTEQLKNQDPLDPLESEQFVQQLVQFSSVEQQIASNESLEALLAL 79

Query: 77  NNL---AQASSYIGKNITNAD 94
                  +A  +IGK  T   
Sbjct: 80  QQSDAQLKALDFIGKEATVNT 100


>gi|225569973|ref|ZP_03778998.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
           15053]
 gi|225161443|gb|EEG74062.1| hypothetical protein CLOHYLEM_06068 [Clostridium hylemonae DSM
           15053]
          Length = 171

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T         S SK    L  + F KLL  Q+++QD   PM  SE +AQ+     ++   
Sbjct: 19  TSSAGNSAGTSSSKGSNELTINDFYKLLSAQLRYQDADNPMDTSEMMAQMVQTQMIQAIT 78

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNA---------DGSISGVVNAIQVSSTGLTAIT 115
           +M++   E+   N ++ ASS +GK +T A           + +G V+ I + +    ++ 
Sbjct: 79  EMSAINLEMYAINTISYASSMVGKTVTMAEVDEDGKFTGETTTGTVSGILMGNN--PSLY 136

Query: 116 VDNTEIPITTGIRISN 131
           +D  E  ++  + +  
Sbjct: 137 IDGKEYSLSQIMTVGE 152


>gi|294013085|ref|YP_003546545.1| flagellar basal-body rod modification protein FlgD [Sphingobium
           japonicum UT26S]
 gi|292676415|dbj|BAI97933.1| flagellar basal-body rod modification protein FlgD [Sphingobium
           japonicum UT26S]
          Length = 218

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
                  K  +GQ  FL+LL  Q++ QDP EP+  ++ VAQ+A  +      +MN TL+ 
Sbjct: 18  NAKVGTGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKN 77

Query: 73  L---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121
           L   L  + L  A+S+IGK++            G   G V+    +S     +   N  +
Sbjct: 78  LASELTGSRLGDAASWIGKSMLVQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137


>gi|33596139|ref|NP_883782.1| flagellar basal body rod modification protein [Bordetella
           parapertussis 12822]
 gi|33573142|emb|CAE36789.1| basal-body rod modification protein FlgD [Bordetella parapertussis]
          Length = 234

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   T         + S S     QD FL LL+TQ+++QDP  PM+ +E  +QLA  S +
Sbjct: 4   VNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTV 63

Query: 61  EQSVQMNSTL---QELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           E    + +T+      +  +    A S IGK +      +S   +    +  G T   +D
Sbjct: 64  EGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVSLGTDPNDPAQRGATPFGID 123

Query: 118 NTEIPITTGIRISN 131
                    +++ +
Sbjct: 124 LQGDATKVTVKVLD 137


>gi|91792663|ref|YP_562314.1| flagellar basal body rod modification protein [Shewanella
           denitrificans OS217]
 gi|91714665|gb|ABE54591.1| flagellar hook capping protein [Shewanella denitrificans OS217]
          Length = 263

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +        ++L Q  F  LL  Q+  QDP +P+   + + Q+A FS ++   ++N  
Sbjct: 51  PTESAIPEAKDQSLTQKDFFALLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGITKLNEE 110

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  +  S+   QAS  +G+ +       +G +++   S  G+ +     ++I + 
Sbjct: 111 ILNLTSVTSSSQALQASGLVGRKVLIPSD--TGYLSSESPSINGVISTPEKISDITVR 166


>gi|15643438|ref|NP_228482.1| basal-body rod modification protein FlgD [Thermotoga maritima MSB8]
 gi|4981197|gb|AAD35757.1|AE001740_3 basal-body rod modification protein FlgD [Thermotoga maritima MSB8]
          Length = 224

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL--- 79
           L ++AFL+LL+ +++ QDP EPM+  + ++QL+  + +EQ   + S +++ +++      
Sbjct: 27  LDKEAFLRLLLQELEMQDPLEPMETKDMISQLSQLTSLEQITNLTSAVKDFVEAQTSVSP 86

Query: 80  AQASSYIGKNITNADGSIS---GVVNAIQVSSTGLTAITV-----DNTEIPITTGIRI 129
           AQ +S IGK +   + +++   G  ++I  +      + V     +   +       +
Sbjct: 87  AQLASLIGKYVVVRNNTVNLVGGQSDSIIFNVDEDAHVVVQILDENGKLVRTEDLGTV 144


>gi|113969605|ref|YP_733398.1| flagellar basal body rod modification protein [Shewanella sp. MR-4]
 gi|113884289|gb|ABI38341.1| flagellar hook capping protein [Shewanella sp. MR-4]
          Length = 256

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
                      + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 44  PGNSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDE 103

Query: 69  --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117
              L  ++ S+   QAS  +G+         N++    ++SGVV+           +  D
Sbjct: 104 IVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDD 163

Query: 118 NTEIPITTGIRISN 131
             ++  T  I  S+
Sbjct: 164 KGQVVSTFNIDGSD 177


>gi|254504946|ref|ZP_05117097.1| flagellar hook capping protein, putative [Labrenzia alexandrii
          DFL-11]
 gi|222441017|gb|EEE47696.1| flagellar hook capping protein, putative [Labrenzia alexandrii
          DFL-11]
          Length = 196

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 24 GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
            + FL +L TQI++QDP +P+ ++E   QL  +S +EQS+Q N  L+E+   L SN  +
Sbjct: 4  NYELFLSMLTTQIQNQDPLDPLDSAEYTNQLVQYSNVEQSIQTNKNLEEMISLLSSNQSS 63

Query: 81 QASSYIGKNITNADGS 96
             +YIG  +T A G+
Sbjct: 64 AYVNYIGTEVTAAGGT 79


>gi|119947178|ref|YP_944858.1| flagellar basal body rod modification protein [Psychromonas
           ingrahamii 37]
 gi|119865782|gb|ABM05259.1| flagellar basal-body rod modification protein FlgD [Psychromonas
           ingrahamii 37]
          Length = 230

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T++    +    + +  +  ++ F+ L++ QI++QDP  P   +E V+QLA FSQ+E + 
Sbjct: 16  TQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAE 75

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            M S +Q    ++ +  +   +S +G+ +         ++ + + S  G  A  +    +
Sbjct: 76  NMVSLMQRNSVMMDNLQVLATASLVGQEV---------MIRSDKFSVDGEPAQNLSGQVV 126

Query: 122 PITTGIRIS 130
             +   +++
Sbjct: 127 LTSPSSQVN 135


>gi|149927797|ref|ZP_01916048.1| Flagellar hook capping protein [Limnobacter sp. MED105]
 gi|149823419|gb|EDM82650.1| Flagellar hook capping protein [Limnobacter sp. MED105]
          Length = 223

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           +++ + +       +  K          Q+ F+ LL+ Q+K+QDP  PM  ++  +Q+A 
Sbjct: 3   IDVTSALGNNSGTTAAKKKTDENSPEAIQERFMSLLVAQLKNQDPLAPMDNAQVTSQMAQ 62

Query: 57  FSQMEQSVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
            + +     +N+T++ +  S   N   QA+S +G+ +      +
Sbjct: 63  LNTVTGINTLNATMEGVAASINANQTVQATSMLGRAVLTEGNDL 106


>gi|329849963|ref|ZP_08264809.1| basal-body rod modification protein flgD [Asticcacaulis
           biprosthecum C19]
 gi|328841874|gb|EGF91444.1| basal-body rod modification protein flgD [Asticcacaulis
           biprosthecum C19]
          Length = 218

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++  T    TQ   +K         + FL LL  QI++QDP  PM ++E   QL  +S +
Sbjct: 2   VDAVTSNATTQTTATKDAKSLAANYETFLSLLTAQIRNQDPLSPMDSTEWTNQLVQYSSV 61

Query: 61  EQSVQMNSTLQELLKS----NNLAQASSYIGKNITNADGSIS 98
           EQ ++ N  L+++ K+    + +  A +YIGK ++    + +
Sbjct: 62  EQQLKGNDYLEKISKALDGGDTMNTAVNYIGKTVSAGTATAT 103


>gi|90577343|ref|ZP_01233154.1| flagellar basal body rod modification protein [Vibrio angustum S14]
 gi|90440429|gb|EAS65609.1| flagellar basal body rod modification protein [Vibrio angustum S14]
          Length = 225

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I +         + +    +L ++ F+ L++ QI++QDP  P+  +E V QLA FSQ+E 
Sbjct: 16  IESTNMAVAGNPNNANDANSL-KNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVES 74

Query: 63  SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           +  M   +Q    LL +  +   +  +G+ +      + 
Sbjct: 75  TENMAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEVE 113


>gi|237731006|ref|ZP_04561487.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
 gi|226906545|gb|EEH92463.1| flagellar hook protein FlgE [Citrobacter sp. 30_2]
          Length = 232

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            T VN      S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  TTGVNAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QAS+ IG  +     +I
Sbjct: 72  EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108


>gi|119384362|ref|YP_915418.1| flagellar basal body rod modification protein [Paracoccus
           denitrificans PD1222]
 gi|119374129|gb|ABL69722.1| flagellar hook capping protein [Paracoccus denitrificans PD1222]
          Length = 221

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)

Query: 1   MEINTEV-------NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQ 53
           M++NT           +Q   + S+S      + FLK+L TQIK+QDP  PM +++   Q
Sbjct: 1   MDMNTSSVTGNVYEGGSQSFSAPSESGSADQFEMFLKMLTTQIKNQDPLNPMNSTDFAVQ 60

Query: 54  LAVFSQMEQSV---QMNSTLQELLKSNNLAQASSYIGKNITNAD 94
           LA FS +EQ V    + + L + +    L Q S++IG+ +    
Sbjct: 61  LATFSGVEQQVQTNLLLTQLLQNINGGELGQFSNWIGREVRTTS 104


>gi|294635609|ref|ZP_06714086.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
           tarda ATCC 23685]
 gi|291091061|gb|EFE23622.1| flagellar basal-body rod modification protein FlgD [Edwardsiella
           tarda ATCC 23685]
          Length = 232

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +   + VN + +    + + + L Q+ FL LL+ Q+++QDPT P++ +E   QLA  S +
Sbjct: 11  VNTGSSVNASSKNGLVADNSQDL-QNNFLTLLVAQLRNQDPTNPLQNNELTTQLAQISTV 69

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
               ++N+TL  +   + SN   QASS IG  +     +I
Sbjct: 70  SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKTI 109


>gi|329901229|ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549161|gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 224

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LAQ 81
           QD F+KLL+TQ+K+QDP  P+  ++  +QLA  S +    +MN+TL+ ++ S       Q
Sbjct: 33  QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92

Query: 82  ASSYIGKNITNADGSI 97
           A+  IG  +      +
Sbjct: 93  AAGMIGHGVLAPGKQM 108


>gi|83955142|ref|ZP_00963798.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
 gi|83840471|gb|EAP79644.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   +  Q     S  +       FL LL  QI++QDP EP+ +++ VAQLA  SQ+EQ
Sbjct: 8   LNNFTSSNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67

Query: 63  SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
           +VQ N+ L+ L    +       +  +G+++T     +
Sbjct: 68  AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105


>gi|224584320|ref|YP_002638118.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224468847|gb|ACN46677.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 232

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|254462177|ref|ZP_05075593.1| possible FlgD protein [Rhodobacterales bacterium HTCC2083]
 gi|206678766|gb|EDZ43253.1| possible FlgD protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 224

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
               ++  +      + FLK+L  Q+++QDP  P+ +++   QLA FS +EQ V+ N  L
Sbjct: 19  DTNQAQKTAALGSDFETFLKMLTVQMENQDPLNPVDSADYAVQLATFSSVEQQVRTNDLL 78

Query: 71  QELLKSNNLAQASS---YIGKNITNADG 95
             L  +       S   ++G ++   + 
Sbjct: 79  SSLAATMASGGVESLGHWVGMDVRAGNE 106


>gi|154252633|ref|YP_001413457.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
 gi|154156583|gb|ABS63800.1| flagellar hook capping protein [Parvibaculum lavamentivorans DS-1]
          Length = 226

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
            + S + +      D FLKLL TQ++HQDPT PM + +   QL   S +EQS+Q N  L+
Sbjct: 17  AKSSTASAALAGNFDTFLKLLTTQLQHQDPTNPMSSDQFTQQLVQMSGVEQSIQTNRYLE 76

Query: 72  ELLKS---NNLAQASSYIGKNITNAD 94
            L+ +    N +Q+ S +GK +T + 
Sbjct: 77  TLITANAIQNASQSVSLLGKEVTGSG 102


>gi|327398497|ref|YP_004339366.1| flagellar hook capping protein [Hippea maritima DSM 10411]
 gi|327181126|gb|AEA33307.1| flagellar hook capping protein [Hippea maritima DSM 10411]
          Length = 226

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 1   MEINTEVNPTQ-----QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+I +  N             +  K T+ ++ FLKLL+ Q+++QDP  PM   + + +  
Sbjct: 1   MDIASIANQANIAESMNSDKVANPKATIDKEGFLKLLVAQLRYQDPLNPMNNDQFIQENT 60

Query: 56  VFSQMEQSVQMNSTLQELLKSNNLA---QASSYIGKNITNADGSI---SGVVNAIQVSST 109
           +FSQ+EQ + M+ ++ + +          A+SY+GK I+  +  I   S  ++ +  + +
Sbjct: 61  MFSQLEQLMNMSKSMNKFMGDLKGNPKEYAASYLGKYISTGENKINVSSNYIDRVNFTLS 120

Query: 110 GLTAITVDNTEIPITTGIRISN 131
               +T+    I  + G  I++
Sbjct: 121 KDAKVTI---HISNSKGEDIAD 139


>gi|227112520|ref|ZP_03826176.1| flagellar basal body rod modification protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 227

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
           +  K+     Q+ FL LL+ Q+K+QDPT PM   + V+QLA  + +    ++N+TL  + 
Sbjct: 25  AVEKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSIS 84

Query: 74  --LKSNNLAQASSYIGKNITNADGSI 97
             + +N   QA++ IG ++      I
Sbjct: 85  GQINNNQSMQATTLIGHSVMIPGKDI 110


>gi|167770212|ref|ZP_02442265.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
           17241]
 gi|167667534|gb|EDS11664.1| hypothetical protein ANACOL_01555 [Anaerotruncus colihominis DSM
           17241]
          Length = 249

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           + ++   +  D FL L++ Q+++QD   P+  ++ V QLA F+ M Q  ++ + ++    
Sbjct: 43  EDENDMGVSVDDFLSLMVAQLQNQDFMNPVDDTQYVTQLAQFATMSQMQELAANMKNNYA 102

Query: 76  SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            + +    +     ++ A    +G ++ + +       ITV+     ++  + I+N
Sbjct: 103 LSLVGTNVTAAKFAVSGALIKETGPISKVSLVDN-SYQITVNGQTFSLSEIMEINN 157



 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 53  QLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITN--ADGSISGVVNAIQVSSTG 110
           Q    S++ +     S+     K++  A   S IGKN+T      +I+G+V  I      
Sbjct: 145 QTFSLSEIMEINNSESSGSTNNKNDQTAYLVSLIGKNVTVKHDGDTITGIVEEISTEDG- 203

Query: 111 LTAITVDNTEIPITTGIRISN 131
              + +D     +     + +
Sbjct: 204 -YKLMIDGEWYSLDEVTGVGS 223


>gi|332161321|ref|YP_004297898.1| flagellar basal body rod modification protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318605241|emb|CBY26739.1| flagellar basal-body rod modification protein FlgD [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665551|gb|ADZ42195.1| flagellar basal body rod modification protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860607|emb|CBX70904.1| basal-body rod modification protein flgD [Yersinia enterocolitica
           W22703]
          Length = 228

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + ++   Q
Sbjct: 32  QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           ASS IG+ +     ++
Sbjct: 92  ASSLIGRGVMVPGTNV 107


>gi|57505770|ref|ZP_00371696.1| hook assembly protein, flagella (flgD), putative [Campylobacter
           upsaliensis RM3195]
 gi|57016043|gb|EAL52831.1| hook assembly protein, flagella (flgD), putative [Campylobacter
           upsaliensis RM3195]
          Length = 274

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           +  T+ +      ++      L +DAFLKLL+ +++HQDPT+PM + + + Q +  + +E
Sbjct: 19  DNTTQNSGDNLTSNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALE 78

Query: 62  QSVQMNSTLQELLKSN----------NLAQASSYIGKNITNADGSI 97
                N+T+Q+++                 A   IGK  T AD  I
Sbjct: 79  MQQNTNNTMQQMVAQMKKLSNAMGTSQSIGALGAIGKMATVADNKI 124


>gi|91776308|ref|YP_546064.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
 gi|91710295|gb|ABE50223.1| flagellar hook capping protein [Methylobacillus flagellatus KT]
          Length = 228

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                + + S  +  QD F+KLLI Q+K+QDP  PM  +E  +Q+A  S +    +MN++
Sbjct: 16  NGSGANNNTSAISETQDRFMKLLIAQMKNQDPLNPMDNAEVTSQMAQLSTVTGIEKMNAS 75

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L      +++    QASS IG  +     S 
Sbjct: 76  LSTFISSMQATQALQASSLIGNTVLVEGNST 106


>gi|71282499|ref|YP_268221.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
           34H]
 gi|71148239|gb|AAZ28712.1| basal-body rod modification protein FlgD [Colwellia psychrerythraea
           34H]
          Length = 256

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
              S+  L Q  F  LL  ++ +QDPT+P+  ++ ++Q+  FS  +    +N +      
Sbjct: 49  SDGSEGMLTQSDFFALLTKELANQDPTKPVDNNQMISQMTAFSTTDGVRTLNDSFGSFAG 108

Query: 74  -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
            + S+   QASS +G+++   D  + G+     V    ++     N +I +   
Sbjct: 109 SMTSSQALQASSLVGRSVLVEDN-VFGMAEGEAVKGKLVSDKPASNVKIYVENV 161


>gi|325982372|ref|YP_004294774.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
 gi|325531891|gb|ADZ26612.1| flagellar hook capping protein [Nitrosomonas sp. AL212]
          Length = 222

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +  ++       K+K      QD FLKLLITQ+K+QDP +P+  +E  +QLA  S +   
Sbjct: 9   SQSISAGTTAGIKTKKDAENPQDRFLKLLITQMKNQDPLKPLDNAEVTSQLAQISTVTGI 68

Query: 64  VQMNSTLQELLKSN---NLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
            ++NSTLQ+L+ S       +A   IG +      SI+              ++      
Sbjct: 69  DKLNSTLQQLVSSADDGRSIEALEMIGHSAYVPGKSITLEGEGAIAGIELAQSVDKATVT 128

Query: 121 IPITTGIRI 129
           I  ++GI I
Sbjct: 129 ILDSSGIAI 137


>gi|114562341|ref|YP_749854.1| flagellar basal body rod modification protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333634|gb|ABI71016.1| flagellar hook capping protein [Shewanella frigidimarina NCIMB 400]
          Length = 261

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            ++        + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++    +N  
Sbjct: 49  PEESAIPESKDQMLKQEDFFALLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISNLNDE 108

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +       +G ++       G+ +       I + 
Sbjct: 109 ILNLNTVMSSSQALQASGLVGRKVLIPSD--TGAISTESSEIKGVISTPSAIETITVR 164


>gi|315453408|ref|YP_004073678.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
 gi|315132460|emb|CBY83088.1| flagellar hook assembly protein [Helicobacter felis ATCC 49179]
          Length = 375

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 46/83 (55%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  + K    L +DAF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAMEKKKHEPKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T++E+  +   ++ ++
Sbjct: 67 MQEESKKTMKEVANAMQSSKETN 89


>gi|119899028|ref|YP_934241.1| basal-body rod modification protein FlgD [Azoarcus sp. BH72]
 gi|119671441|emb|CAL95354.1| probable basal-body rod modification protein FlgD [Azoarcus sp.
           BH72]
          Length = 224

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +    ++ + + S     ++ FL LL TQ+++QDP  PM+ +E  +QLA  S +E   +
Sbjct: 14  ILASLARKDTTTTSTTQQSKNQFLTLLTTQLQNQDPMNPMENAELTSQLAQLSTVEGIEK 73

Query: 66  MNSTLQELLKSNNL---AQASSYIGKNITNADGSIS 98
           +NS + +LL+S       QA++ +G+ +     +++
Sbjct: 74  LNSMMTQLLQSQASAEGLQAAALVGRGVLVEGKNLT 109


>gi|62179693|ref|YP_216110.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127326|gb|AAX65029.1| flagellar biosynthesis, initiation of hook assembly [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322714163|gb|EFZ05734.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 232

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|254470066|ref|ZP_05083470.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
 gi|211960377|gb|EEA95573.1| flagellar hook capping protein [Pseudovibrio sp. JE062]
          Length = 218

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           IN          S +++      D F+ LL TQI++QDP EP+ +SE   QL  ++ +EQ
Sbjct: 4   INALTPNAGSSGSSAQNSINANFDLFISLLTTQIQNQDPLEPLDSSEYTNQLVQYTMVEQ 63

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLT 112
            V     L E L      + +Q  +YIGK +T         D   S  ++A+      +T
Sbjct: 64  QVATTEKLDEQLTQLKTQSASQFVNYIGKEVTAQSSTAQLKDDKASWNLDAVSAGKATVT 123

Query: 113 AITVDNTEIPITTGIRI 129
               +  E+       +
Sbjct: 124 IKNSEGAEVYQKEIDLV 140


>gi|16760052|ref|NP_455669.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16764532|ref|NP_460147.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29142177|ref|NP_805519.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56413837|ref|YP_150912.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614601|ref|YP_001588566.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167553036|ref|ZP_02346786.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234102|ref|ZP_02659160.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237258|ref|ZP_02662316.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168244775|ref|ZP_02669707.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168264031|ref|ZP_02686004.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168467128|ref|ZP_02700970.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822619|ref|ZP_02834619.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446242|ref|YP_002040430.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194450049|ref|YP_002045175.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471560|ref|ZP_03077544.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734983|ref|YP_002114175.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197249054|ref|YP_002146867.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264764|ref|ZP_03164838.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362760|ref|YP_002142397.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198243981|ref|YP_002215961.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200391018|ref|ZP_03217629.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204930747|ref|ZP_03221620.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353086|ref|YP_002226887.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857316|ref|YP_002243967.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213026535|ref|ZP_03340982.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213161845|ref|ZP_03347555.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213419884|ref|ZP_03352950.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424679|ref|ZP_03357444.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582036|ref|ZP_03363862.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648925|ref|ZP_03378978.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213865506|ref|ZP_03387625.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828581|ref|ZP_06546406.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|60392285|sp|P0A1I9|FLGD_SALTY RecName: Full=Basal-body rod modification protein flgD
 gi|60392286|sp|P0A1J0|FLGD_SALTI RecName: Full=Basal-body rod modification protein flgD
 gi|25355188|pir||AI0639 flagellar hook formation protein FlgD [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|534883|dbj|BAA04982.1| flagella [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419693|gb|AAL20106.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502346|emb|CAD08300.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137807|gb|AAO69368.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56128094|gb|AAV77600.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161363965|gb|ABX67733.1| hypothetical protein SPAB_02351 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404905|gb|ACF65127.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194408353|gb|ACF68572.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457924|gb|EDX46763.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710485|gb|ACF89706.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630307|gb|EDX48933.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094237|emb|CAR59742.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212757|gb|ACH50154.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197243019|gb|EDY25639.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197289802|gb|EDY29163.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197938497|gb|ACH75830.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199603463|gb|EDZ02009.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204320206|gb|EDZ05410.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205272867|emb|CAR37796.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322429|gb|EDZ10268.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205331933|gb|EDZ18697.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336417|gb|EDZ23181.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341045|gb|EDZ27809.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347362|gb|EDZ33993.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709119|emb|CAR33452.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261246387|emb|CBG24196.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992950|gb|ACY87835.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157717|emb|CBW17209.1| flagellar hook formation protein FlgD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912163|dbj|BAJ36137.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086384|emb|CBY96157.1| Basal-body rod modification protein flgD [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223794|gb|EFX48857.1| Flagellar basal-body rod modification protein FlgD [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616546|gb|EFY13455.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620513|gb|EFY17377.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622507|gb|EFY19352.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629658|gb|EFY26433.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632622|gb|EFY29368.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636883|gb|EFY33586.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641579|gb|EFY38217.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644069|gb|EFY40615.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650031|gb|EFY46449.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653956|gb|EFY50279.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658488|gb|EFY54750.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663346|gb|EFY59548.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670080|gb|EFY66220.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674856|gb|EFY70947.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676674|gb|EFY72741.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682596|gb|EFY78615.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686651|gb|EFY82630.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129446|gb|ADX16876.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195765|gb|EFZ80941.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198343|gb|EFZ83447.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203173|gb|EFZ88203.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209176|gb|EFZ94113.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209680|gb|EFZ94609.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217864|gb|EGA02579.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222152|gb|EGA06536.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224924|gb|EGA09182.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229666|gb|EGA13789.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232891|gb|EGA16987.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240626|gb|EGA24668.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242940|gb|EGA26961.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323250257|gb|EGA34146.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252632|gb|EGA36470.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258840|gb|EGA42493.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261029|gb|EGA44622.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266938|gb|EGA50423.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269979|gb|EGA53428.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623709|gb|EGE30054.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628166|gb|EGE34509.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 232

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|88858144|ref|ZP_01132786.1| flagellar basal body rod modification protein [Pseudoalteromonas
           tunicata D2]
 gi|88819761|gb|EAR29574.1| flagellar basal body rod modification protein [Pseudoalteromonas
           tunicata D2]
          Length = 240

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +++  +   ++   ++    L Q  F  L+  Q+  QDP  P      +AQ+   S  E 
Sbjct: 14  VDSLRSTKDEKIQTAEEANELSQSDFFTLMTKQLSMQDPMNPTDNEAMMAQMTNMSIAEG 73

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNIT--------NADGSISGVVNAIQVSSTGL 111
              M +   +    + SN   QASS +G+N+              I+G +     +S   
Sbjct: 74  VSNMATKFDQFAVSMTSNQALQASSLVGRNVLIDTHYVQNTPGEPITGRIPLEGPASDIK 133

Query: 112 TAITVDNTEI 121
             I  +   +
Sbjct: 134 VRIEDERGIV 143


>gi|89072316|ref|ZP_01158895.1| flagellar basal body rod modification protein [Photobacterium sp.
           SKA34]
 gi|89051848|gb|EAR57300.1| flagellar basal body rod modification protein [Photobacterium sp.
           SKA34]
          Length = 226

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N +      + +     ++ F+ L++ QI++QDP  P+  +E V QLA FSQ+E +  
Sbjct: 18  STNMSVAGNPNNANDANSLKNEFINLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVESTEN 77

Query: 66  MNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           M   +Q    LL +  +   +  +G+ +      I 
Sbjct: 78  MAKLMQNSMVLLDNMQVLSTAGLVGQTVYVEGSEIE 113


>gi|238916753|ref|YP_002930270.1| flagellar basal-body rod modification protein FlgD [Eubacterium
           eligens ATCC 27750]
 gi|238872113|gb|ACR71823.1| flagellar basal-body rod modification protein FlgD [Eubacterium
           eligens ATCC 27750]
          Length = 185

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 4/130 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           ++NT ++ T +  S S +K TL  + FL+L++ ++++QDP EP   S+ +AQLA F+Q+E
Sbjct: 22  DVNTNISSTGKNNS-SGNKTTLDVNEFLQLMVAEMQNQDPLEPTDNSDYMAQLATFTQVE 80

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            + +MN+   + + S+ + +          N+DG I G V+  + S  G   + +     
Sbjct: 81  ATKEMNTNTLQGMASDLVGKQVIMTTNQ--NSDGFIGGTVDYWE-SINGTVYLGIGGKLY 137

Query: 122 PITTGIRISN 131
            I+    + +
Sbjct: 138 DISDLDTVMD 147


>gi|170725954|ref|YP_001759980.1| flagellar basal body rod modification protein [Shewanella woodyi
           ATCC 51908]
 gi|169811301|gb|ACA85885.1| flagellar hook capping protein [Shewanella woodyi ATCC 51908]
          Length = 270

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +      + + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++    +N  
Sbjct: 58  PDESSIPEPNNQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGINNLNDE 117

Query: 69  --TLQELLKSNNLAQASSYIGK---------NITNADGSISGVVNAIQVSSTGLTAITVD 117
              L  ++ S+   QAS  +G+         +++     + G+++  +   +    +  D
Sbjct: 118 IVNLNTVMTSSQALQASGLVGQKVLIPSDTGHVSAEGRELKGIISTPEAIESITVRVEDD 177


>gi|1857437|gb|AAC45655.1| FlgD [Proteus mirabilis]
          Length = 182

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT +      +   K      +  FL LLITQ+++QDPT PM+ +E  +QLA  S +E  
Sbjct: 7   NTIIGEAPSSYHTKKGGSDDIKGNFLTLLITQMQNQDPTNPMQNNELTSQLAQISTVEGI 66

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             +N T+  ++     +   +A+S +   +  A   I      +  S+ G  A +  +T+
Sbjct: 67  ETLNKTVNTIVGQIDQSQALRATSLVNHMVMIAGNDI-----YVDKSNNGENAGSDADTD 121

Query: 121 IPIT 124
           I   
Sbjct: 122 IDTD 125


>gi|310659038|ref|YP_003936759.1| flagellar hook capping protein [Clostridium sticklandii DSM 519]
 gi|308825816|emb|CBH21854.1| Flagellar hook capping protein [Clostridium sticklandii]
          Length = 128

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query: 6  EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            N   ++    +    LG+DAFL+LL TQ+ HQDP  P    E ++Q+A FS +EQ   
Sbjct: 14 ITNTGTEKNYTRQVNSELGKDAFLRLLTTQLSHQDPLNPTDDKEFLSQMASFSSLEQMQN 73

Query: 66 MNSTLQELLKSNNLAQ 81
          +N++   L K+    Q
Sbjct: 74 LNTSFAGLDKTMQDTQ 89


>gi|153952103|ref|YP_001397314.1| flagellar basal body rod modification protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152939549|gb|ABS44290.1| flagellar hook assembly protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 287

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 41  SNPNATLDKDAFLKLLLVELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 100

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
                 S            IGK  T  +  +
Sbjct: 101 MQKLSDSFSASMSTSALGAIGKMATVNENKV 131


>gi|163744353|ref|ZP_02151713.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
 gi|161381171|gb|EDQ05580.1| Flagellar hook capping protein [Oceanibulbus indolifex HEL-45]
          Length = 222

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLA 80
             ++FL LL  QI +QDP  P+ +++ V+QLA  +Q+EQS+  N++L++   +L +    
Sbjct: 28  SYNSFLTLLTAQISNQDPLNPVDSTQFVSQLAQLTQVEQSIATNASLEQISTMLSTVGAM 87

Query: 81  QASSYIGKNITNADGSI 97
                IG+++      +
Sbjct: 88  SDLQLIGRDVLVPSSQV 104


>gi|254973918|ref|ZP_05270390.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-66c26]
 gi|255091305|ref|ZP_05320783.1| putative basal-body rod modification protein [Clostridium difficile
           CIP 107932]
 gi|255312962|ref|ZP_05354545.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-76w55]
 gi|255515721|ref|ZP_05383397.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-97b34]
 gi|255648815|ref|ZP_05395717.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-37x79]
 gi|260682034|ref|YP_003213319.1| putative basal-body rod modification protein [Clostridium difficile
           CD196]
 gi|260685632|ref|YP_003216765.1| putative basal-body rod modification protein [Clostridium difficile
           R20291]
 gi|306518930|ref|ZP_07405277.1| putative basal-body rod modification protein [Clostridium difficile
           QCD-32g58]
 gi|260208197|emb|CBA60540.1| putative basal-body rod modification protein [Clostridium difficile
           CD196]
 gi|260211648|emb|CBE01905.1| putative basal-body rod modification protein [Clostridium difficile
           R20291]
          Length = 202

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                T              +D F+K+L+ Q+ +QDP  P   +E V+QLA F+ +E+  
Sbjct: 39  GNQTVTDNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMS 98

Query: 65  QMNSTLQELLK-------SNNLAQASSYIGK-----NITNADGSISGVVNAIQVSSTGLT 112
            MN  L  LL        ++ L+ A+S IGK          D +I GVV +  +    + 
Sbjct: 99  AMNDKLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVH 158

Query: 113 A-ITVDNTEIPIT 124
             + VD ++  + 
Sbjct: 159 LELEVDGSDKTVG 171


>gi|315127354|ref|YP_004069357.1| flagellar basal body rod modification protein [Pseudoalteromonas
           sp. SM9913]
 gi|315015868|gb|ADT69206.1| flagellar basal body rod modification protein [Pseudoalteromonas
           sp. SM9913]
          Length = 225

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
             ++  K +    L Q+ F  LL  Q+ +QDP++P    + +AQ+  F+  E    +NS 
Sbjct: 18  QDKQVPKKEESDALTQEDFFSLLTQQLSYQDPSKPADNDQMIAQMTNFTMAEGISNLNSN 77

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSIS 98
            + L   + SN+  QAS+ +GK       ++ 
Sbjct: 78  FESLAASMTSNSALQASTLVGKQALLESDTLE 109


>gi|291286228|ref|YP_003503044.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883388|gb|ADD67088.1| flagellar hook capping protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 232

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 18/138 (13%)

Query: 4   NTEVNPTQQEFSK---SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
            T V+  Q + S    + ++  L Q  FL L ITQ+++QDPT+PM  S  + Q A F+Q+
Sbjct: 6   TTTVDTKQYDTSDIEYNNTQGELSQSDFLNLFITQLQNQDPTDPMDDSAMMEQTATFTQV 65

Query: 61  EQSVQMNSTLQE-------LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA 113
           E    M  +L E       L     +  AS YIGK +     +           S G+ A
Sbjct: 66  ELLTSMEKSLSEIAGGASNLNTQQLMMSASGYIGKLVEFDGNN--------TYLSDGVAA 117

Query: 114 ITVDNTEIPITTGIRISN 131
           ++ +  E+P  T + I +
Sbjct: 118 VSFEAEEVPFKTTVTIKD 135


>gi|83944158|ref|ZP_00956614.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
 gi|83845025|gb|EAP82906.1| flagellar hook assembly protein FlgD [Sulfitobacter sp. EE-36]
          Length = 223

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   +  Q     S  +       FL LL  QI++QDP EP+ +++ VAQLA  SQ+EQ
Sbjct: 8   LNNFTSTNQSSAQDSLGQLGEDYTKFLTLLTAQIQNQDPLEPVDSTQFVAQLAQLSQVEQ 67

Query: 63  SVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSI 97
           +VQ N+ L+ L    +       +  +G+++T     +
Sbjct: 68  AVQTNTQLETLTSQISGLLNLGGTDLLGRDVTVQSDVV 105


>gi|261856361|ref|YP_003263644.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
 gi|261836830|gb|ACX96597.1| flagellar hook capping protein [Halothiobacillus neapolitanus c2]
          Length = 245

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T         +     ++L  ++F+KLL TQ+++QDPT P   S+ +AQLA FS ++   
Sbjct: 22  TGSGANSTSGTSGNGAESLDMNSFMKLLTTQLQNQDPTNPTDNSQMIAQLAQFSSLQGIS 81

Query: 65  QMNST---LQELLKSNNLAQASSYIGKNITNADGS 96
           Q+N+T    Q  L+S+ + QA++ +GK       +
Sbjct: 82  QLNTTVNGFQSTLQSSQIMQAAALVGKAAIVKGDT 116


>gi|144900454|emb|CAM77318.1| Basal-body rod modification protein FlgD [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 226

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
           E        + S ++     D FL +L  Q+K+QDP  PM ++E   QL  FS +EQ + 
Sbjct: 7   ESTGASNNAANSGTRLAENFDTFLTMLTVQLKNQDPLSPMDSTEFTNQLVQFSAVEQQIA 66

Query: 66  MNSTLQELLKSNNLA---QASSYIGKNITNADGSI 97
            N  L+ L+         QA +YIG  I  A  ++
Sbjct: 67  SNKNLENLISVTQTNTKAQAIAYIGHTIEVAASAV 101


>gi|148980303|ref|ZP_01815990.1| flagellar basal body rod modification protein D [Vibrionales
           bacterium SWAT-3]
 gi|145961322|gb|EDK26632.1| flagellar basal body rod modification protein D [Vibrionales
           bacterium SWAT-3]
          Length = 222

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   + +      + +  +  ++ F+ L++ QI++QDP  P   +E VAQLA FSQ+E 
Sbjct: 10  VNNIESASTMTPQDNPNSASALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVES 69

Query: 63  SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
           +     +      +L +  +   ++ I K +T     +S
Sbjct: 70  TENLVQLTQNNSTMLDNLQVLSTAALIDKTVTVKSERLS 108


>gi|209964700|ref|YP_002297615.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
           centenum SW]
 gi|209958166|gb|ACI98802.1| basal-body rod modification protein FlgD, putative [Rhodospirillum
           centenum SW]
          Length = 309

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 9/108 (8%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
             + FL+LL  Q+K+QDP +P + SE   QL  FSQ+EQ +  NS L  L   ++     
Sbjct: 33  NYETFLQLLTAQLKNQDPLQPQETSEFTNQLVQFSQVEQQISTNSKLDNLTGVVQQGQAT 92

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
            A  YIGK +      I        +      +  +D      T  I 
Sbjct: 93  VALQYIGKTVELEPSGI------PLLPGGTTVSYDIDGEVRSATLVIS 134


>gi|22127328|ref|NP_670751.1| flagellar basal body rod modification protein [Yersinia pestis KIM
           10]
 gi|45442795|ref|NP_994334.1| flagellar basal body rod modification protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108809056|ref|YP_652972.1| flagellar basal body rod modification protein [Yersinia pestis
           Antiqua]
 gi|108810747|ref|YP_646514.1| flagellar basal body rod modification protein [Yersinia pestis
           Nepal516]
 gi|145597816|ref|YP_001161892.1| flagellar basal body rod modification protein [Yersinia pestis
           Pestoides F]
 gi|150260250|ref|ZP_01916978.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125]
 gi|162420922|ref|YP_001604848.1| flagellar basal body rod modification protein [Yersinia pestis
           Angola]
 gi|165925067|ref|ZP_02220899.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939088|ref|ZP_02227640.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008806|ref|ZP_02229704.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211874|ref|ZP_02237909.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398737|ref|ZP_02304261.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418933|ref|ZP_02310686.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425065|ref|ZP_02316818.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466341|ref|ZP_02331045.1| basal-body rod modification protein FlgD [Yersinia pestis FV-1]
 gi|218927911|ref|YP_002345786.1| flagellar basal body rod modification protein [Yersinia pestis
           CO92]
 gi|229837407|ref|ZP_04457570.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           Pestoides A]
 gi|229840620|ref|ZP_04460779.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842829|ref|ZP_04462981.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900944|ref|ZP_04516068.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           Nepal516]
 gi|270487674|ref|ZP_06204748.1| flagellar hook capping protein [Yersinia pestis KIM D27]
 gi|294502787|ref|YP_003566849.1| flagellar basal body rod modification protein [Yersinia pestis
           Z176003]
 gi|21960409|gb|AAM87002.1|AE013948_10 putative flagellar assembly protein [Yersinia pestis KIM 10]
 gi|45437661|gb|AAS63211.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774395|gb|ABG16914.1| basal-body rod modification protein [Yersinia pestis Nepal516]
 gi|108780969|gb|ABG15027.1| putative basal-body rod modification protein [Yersinia pestis
           Antiqua]
 gi|115346522|emb|CAL19398.1| putative basal-body rod modification protein [Yersinia pestis CO92]
 gi|145209512|gb|ABP38919.1| basal-body rod modification protein [Yersinia pestis Pestoides F]
 gi|149289658|gb|EDM39735.1| lateral flagellar hook capping protein [Yersinia pestis CA88-4125]
 gi|162353737|gb|ABX87685.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
 gi|165913044|gb|EDR31669.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923267|gb|EDR40418.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992145|gb|EDR44446.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206620|gb|EDR51100.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962927|gb|EDR58948.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051241|gb|EDR62649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055828|gb|EDR65609.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682283|gb|EEO78375.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           Nepal516]
 gi|229690096|gb|EEO82153.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696986|gb|EEO87033.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705530|gb|EEO91540.1| flagellar basal-body rod modification protein flgD [Yersinia pestis
           Pestoides A]
 gi|262360819|gb|ACY57540.1| flagellar basal body rod modification protein [Yersinia pestis
           D106004]
 gi|262364763|gb|ACY61320.1| flagellar basal body rod modification protein [Yersinia pestis
           D182038]
 gi|270336178|gb|EFA46955.1| flagellar hook capping protein [Yersinia pestis KIM D27]
 gi|294353246|gb|ADE63587.1| flagellar basal body rod modification protein [Yersinia pestis
           Z176003]
 gi|320016712|gb|ADW00284.1| Flagellar basal-body rod modification proteinflgD [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 218

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+IN   N           +  L       + F+ LL+ QIK+QDP  P   +E V+Q+A
Sbjct: 1   MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             SQ++ +  M   L+     +        ++ +G+ +      I+
Sbjct: 61  QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106


>gi|217972597|ref|YP_002357348.1| flagellar basal body rod modification protein [Shewanella baltica
           OS223]
 gi|217497732|gb|ACK45925.1| flagellar hook capping protein [Shewanella baltica OS223]
          Length = 256

 Score = 74.7 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
                + L QD F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N     L  
Sbjct: 50  PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109

Query: 73  LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           ++ S+   QAS  +G+ +     + +G ++A   +  G+ +      EI + 
Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159


>gi|253688973|ref|YP_003018163.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755551|gb|ACT13627.1| flagellar hook capping protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 224

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
            K+     Q+ FL LL+ Q+K+QDPT PM   + V+QLA  + +    ++N+TL  +   
Sbjct: 24  EKNSSADLQNQFLTLLVAQLKNQDPTNPMSNDQLVSQLAQLNTVSGIEKLNTTLGSISGQ 83

Query: 74  LKSNNLAQASSYIGKNITNADGSI 97
           + +N   QA++ IG ++      I
Sbjct: 84  INNNQSMQATTLIGHSVMIPGKDI 107


>gi|283833631|ref|ZP_06353372.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
           29220]
 gi|291071314|gb|EFE09423.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
           29220]
          Length = 232

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  V       S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NAGVKAATGNSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QAS+ IG  +     +I
Sbjct: 72  EKLNTTLGSISGQIDNSQSLQASTLIGHGVMIPGTTI 108


>gi|117926845|ref|YP_867462.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
 gi|117610601|gb|ABK46056.1| flagellar hook capping protein [Magnetococcus sp. MC-1]
          Length = 224

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             +P   +++ + +     Q  FL++L  Q++HQDP EPM+ +E  +QLA F  + Q   
Sbjct: 12  VYDPNASKYTSTSTDAKELQSDFLRMLTAQLEHQDPLEPMENTEFTSQLATFEGLSQQQN 71

Query: 66  MNSTLQELLKSN-----NLAQASSYIGKNITNADGSIS 98
               LQ+L++        + QA +YIG+ +     +++
Sbjct: 72  STQLLQQLVELMSGGTDQVGQAVAYIGREVLVEGNTLT 109


>gi|285018210|ref|YP_003375921.1| flagellar hook capping protein flgd [Xanthomonas albilineans GPE
           PC73]
 gi|283473428|emb|CBA15933.1| probable flagellar hook capping protein flgd [Xanthomonas
           albilineans]
          Length = 226

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---N 78
            L Q  FLKL+  Q++HQDP +PM  S+ V+Q+A  S ++    +N T+  L  S     
Sbjct: 31  ALKQADFLKLMTEQLQHQDPLKPMDNSQMVSQMAQLSTVQGIGDLNKTVTALSASMSTDQ 90

Query: 79  LAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITVDNTEIP 122
           + + ++ IG  +           DG+  G+V A       LT    +   I 
Sbjct: 91  VLRGANLIGHKVLVPSASLPLGSDGAAGGMVAATSAGVVNLTVSDANGKAIK 142


>gi|259907633|ref|YP_002647989.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
          pyrifoliae Ep1/96]
 gi|224963255|emb|CAX54739.1| Flagellar basal-body rod modification protein, FlgD [Erwinia
          pyrifoliae Ep1/96]
 gi|283477475|emb|CAY73391.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
          12163]
          Length = 226

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M ++   N          S       +F+ LLI Q+++QDPT PM  ++  +QLA F+  
Sbjct: 1  MSVSPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60

Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95
              ++N ++     +L       A+S++G+ +  A  
Sbjct: 61 AGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98


>gi|254450579|ref|ZP_05064016.1| basal-body rod modification protein FlgD [Octadecabacter
           antarcticus 238]
 gi|198264985|gb|EDY89255.1| basal-body rod modification protein FlgD [Octadecabacter
           antarcticus 238]
          Length = 226

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 1   MEINTEVNPTQQ-----EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           ME+   + P  Q     +   S++  +   + FLK+L  Q+++QDP  P  +SE   QLA
Sbjct: 7   MELTQALTPVSQPAFSPQAEPSETVISSNFETFLKMLTVQMENQDPLNPTDSSEYAQQLA 66

Query: 56  VFSQMEQSVQMNSTLQELLKSNN---LAQASSYIGKN 89
            FS +EQ+V  N  L  L+   N   +AQ + ++GK 
Sbjct: 67  TFSGVEQAVLTNDLLSALMVQMNTTGMAQMADWVGKE 103


>gi|183598616|ref|ZP_02960109.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
 gi|188020795|gb|EDU58835.1| hypothetical protein PROSTU_02016 [Providencia stuartii ATCC 25827]
          Length = 279

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 4   NTEVNP---TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           NT   P        +K+KS+    +D FLK+++TQ+++QDPT+PM+ +E  +QLA  + +
Sbjct: 13  NTTAGPEPLKSNIPNKNKSQTDDMRDTFLKMIVTQMQNQDPTKPMENAELTSQLAQIATL 72

Query: 61  EQSVQMNST---LQELLKSNNLAQASSYIGKNITNADGSI 97
           E   +++     +   + S    QA+  +GK +      I
Sbjct: 73  ESMNKLSDKVSGISSQIGSGQSLQATQLVGKGVLIPRNEI 112


>gi|149189835|ref|ZP_01868115.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
 gi|148836321|gb|EDL53278.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
          Length = 225

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + ++ N       +  +  T  Q+ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ 
Sbjct: 15  VASQSNAGIAANPQDMNSATSLQNEFITLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQS 74

Query: 63  SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           +  M+  +Q    LL +  +   +  +G+ +  +   + 
Sbjct: 75  TENMSMLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEVE 113


>gi|161503736|ref|YP_001570848.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865083|gb|ABX21706.1| hypothetical protein SARI_01821 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 232

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + +     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTGSGSMTGNNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|110677576|ref|YP_680583.1| flagellar basal body rod modification protein [Roseobacter
          denitrificans OCh 114]
 gi|109453692|gb|ABG29897.1| flagellar basal-body rod modification protein, putative
          [Roseobacter denitrificans OCh 114]
          Length = 226

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 8/97 (8%)

Query: 1  MEINTEVNPT---QQEFSKSKSKKTL--GQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
          M+I          Q   +++ +   L    + FLK+L  Q + QDP EP+ +SE  AQLA
Sbjct: 1  MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA 60

Query: 56 VFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKN 89
           FS +EQ V  N  L EL   L SN++ Q +++IG  
Sbjct: 61 QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGME 97


>gi|310764861|gb|ADP09811.1| Flagellar basal-body rod modification protein, FlgD [Erwinia sp.
          Ejp617]
          Length = 226

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M ++   N          S       +F+ LLI Q+++QDPT PM  ++  +QLA F+  
Sbjct: 1  MSVSPVNNTRGPGQVDMGSSAADISGSFMTLLIAQMQNQDPTNPMDNNQLTSQLAQFNTA 60

Query: 61 EQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITNADG 95
              ++N ++     +L       A+S++G+ +  A  
Sbjct: 61 AGVEKLNDSVAIVGGMLVQMQEMGATSWVGREVMIAGD 98


>gi|307293788|ref|ZP_07573632.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
 gi|306879939|gb|EFN11156.1| flagellar hook capping protein [Sphingobium chlorophenolicum L-1]
          Length = 218

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
                  K  +GQ  FL+LL  Q++ QDP EP+  ++ VAQ+A  +      +MN TL+ 
Sbjct: 18  NAKVGTGKSEMGQADFLRLLTAQMQTQDPFEPVDNAQMVAQMATITNSSGIAEMNQTLKN 77

Query: 73  L---LKSNNLAQASSYIGKNITNAD--------GSISGVVNAIQVSSTGLTAITVDNTEI 121
           L   L  + L  A+S+IGK++            G   G V+    +S     +   N  +
Sbjct: 78  LASELTGSRLGDAASWIGKSMLIQSNIAAPDAAGQYMGQVSFADATSGASVDLIDGNGNV 137


>gi|222053609|ref|YP_002535971.1| flagellar hook capping protein [Geobacter sp. FRC-32]
 gi|221562898|gb|ACM18870.1| flagellar hook capping protein [Geobacter sp. FRC-32]
          Length = 221

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA-- 80
           L +D FL+L +TQ+++QDP  P  +S+ + QLA  +++EQS   N+ LQ +L  +N    
Sbjct: 24  LNKDDFLRLFVTQLQNQDPLNPQDSSQFITQLAQITEVEQSYNTNTNLQSILTQSNNMAS 83

Query: 81  -QASSYIGKNITNADGSIS 98
             A S+IGK+I      IS
Sbjct: 84  LSAVSFIGKSILAPGSQIS 102


>gi|269103191|ref|ZP_06155888.1| flagellar basal-body rod modification protein FlgD [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163089|gb|EEZ41585.1| flagellar basal-body rod modification protein FlgD [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 243

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-- 69
           Q+  K+  +  L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN    
Sbjct: 27  QQEQKTTGQNALKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGITKMNDQFG 86

Query: 70  -LQELLKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAI 114
            L   L SN   QASS +G ++           DG++SGVV   Q     +  +
Sbjct: 87  VLNTALTSNQALQASSLVGLDVLIPSATAMKTQDGAMSGVVRVNQGVDNAILRV 140


>gi|158320519|ref|YP_001513026.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
 gi|158140718|gb|ABW19030.1| flagellar hook capping protein [Alkaliphilus oremlandii OhILAs]
          Length = 141

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              + K    LG+DAFL LL+TQ+K+QDP  PM   + +AQ+A FS +EQ   +N+TL 
Sbjct: 18 SGNQEKKQTDALGKDAFLNLLVTQLKNQDPLNPMDDRDFIAQMAQFSSLEQMQNLNTTLT 77

Query: 72 ELLKS 76
              S
Sbjct: 78 NTQSS 82


>gi|239628986|ref|ZP_04672017.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519132|gb|EEQ58998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 213

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
               K +  + FL L++ Q+K+QD   P+  ++ V QLA  S M+Q  QM    +    +
Sbjct: 67  DADDKMVSMEDFLTLMVAQLKNQDFMNPVDDTQYVTQLAQISTMQQMEQMAYNAKSTYVT 126

Query: 77  NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           + + +  S     ++       G+V+ + +       I VD     +   + I
Sbjct: 127 SLVGKYVSAAKFTVSGELKKSEGLVDKVSLL-DEKFVIYVDGEAYDMDEIMEI 178


>gi|170022970|ref|YP_001719475.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169749504|gb|ACA67022.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII]
          Length = 218

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+IN   N           +  L       + F+ LL+ QIK+QDP  P   +E V+Q+A
Sbjct: 1   MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             SQ++ +  M   L+     +        ++ +G+ +      I+
Sbjct: 61  QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106


>gi|254510795|ref|ZP_05122862.1| basal-body rod modification protein FlgD [Rhodobacteraceae
           bacterium KLH11]
 gi|221534506|gb|EEE37494.1| basal-body rod modification protein FlgD [Rhodobacteraceae
           bacterium KLH11]
          Length = 221

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
             ++  T   + FL++L  Q ++QDP EP+ +SE  +QLA FS +EQ VQ N+ L +L  
Sbjct: 21  TQRAALTSDFETFLRMLTVQARNQDPLEPLDSSEYASQLAQFSMVEQQVQANALLSDLSL 80

Query: 74  -LKSNNLAQASSYIGKNITNA 93
            L S NL Q +S++G ++   
Sbjct: 81  TLGSVNLNQLASWVGMDVRTD 101


>gi|51597638|ref|YP_071829.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186896772|ref|YP_001873884.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590920|emb|CAH22576.1| Possible FlgD-like basal-body rod modification protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699798|gb|ACC90427.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+]
          Length = 218

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+IN   N           +  L       + F+ LL+ QIK+QDP  P   +E V+Q+A
Sbjct: 1   MQINESRNSANVGNQSPAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             SQ++ +  M   L+     +        ++ +G+ +      I+
Sbjct: 61  QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVEGHEIT 106


>gi|153950222|ref|YP_001401291.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961717|gb|ABS49178.1| basal-body rod modification protein FlgD [Yersinia
           pseudotuberculosis IP 31758]
          Length = 228

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + SN    
Sbjct: 32  QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSNQSLY 91

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG+ +     +I
Sbjct: 92  ATSLIGRGVMVPGTNI 107


>gi|294140183|ref|YP_003556161.1| basal-body rod modification protein FlgD [Shewanella violacea
           DSS12]
 gi|293326652|dbj|BAJ01383.1| basal-body rod modification protein FlgD [Shewanella violacea
           DSS12]
          Length = 235

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            +++     + + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++    +N  
Sbjct: 23  PEEKSIPEANSQGLSQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISNLNDE 82

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
              L  ++ S+   QAS  +G+ +     +    V    +     T   ++   + I  
Sbjct: 83  IINLNTVMTSSQALQASGLVGQKVLIPSDTGHLSVEDPVLKGVVSTPEAIEIIVVRIED 141


>gi|315281357|ref|ZP_07869997.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
 gi|313614996|gb|EFR88500.1| flagellar hook capping protein [Listeria marthii FSL S4-120]
          Length = 140

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 74/133 (55%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +  N        S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGANQNANNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +  +
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPMTYVTEIN 140


>gi|238762360|ref|ZP_04623331.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
           33638]
 gi|238699345|gb|EEP92091.1| Basal-body rod modification protein [Yersinia kristensenii ATCC
           33638]
          Length = 219

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           E+N++            +   L  + F+ LL+ QI++QDP  PM  +E V+Q+A  SQ++
Sbjct: 9   ELNSKSGAVSPRQDVLPNGDELN-NQFMTLLVAQIQNQDPLNPMDGTEFVSQMAQLSQVQ 67

Query: 62  QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
            +  M   L+     ++       ++ +G+ +      + 
Sbjct: 68  STENMAKMLKSNTVQMERMQSIATANLVGQQVMVESDDVE 107


>gi|51596010|ref|YP_070201.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|170024648|ref|YP_001721153.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis YPIII]
 gi|186895113|ref|YP_001872225.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589292|emb|CAH20913.1| basal-body rod modification protein FlgD [Yersinia
           pseudotuberculosis IP 32953]
 gi|169751182|gb|ACA68700.1| flagellar hook capping protein [Yersinia pseudotuberculosis YPIII]
 gi|186698139|gb|ACC88768.1| flagellar hook capping protein [Yersinia pseudotuberculosis PB1/+]
          Length = 228

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+    
Sbjct: 32  QNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 91

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG+ +     +I
Sbjct: 92  ATSLIGRGVMVPGTNI 107


>gi|149191152|ref|ZP_01869410.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
 gi|148834990|gb|EDL51969.1| flagellar basal body rod modification protein D [Vibrio shilonii
           AK1]
          Length = 221

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   + +     ++ +     ++ F+ L++ QI++QDP  P   +E VAQLA FSQ+E 
Sbjct: 10  VNNIESASTLPPQENPNSAGALKNEFITLMVAQIENQDPLNPTDGTEYVAQLAQFSQVES 69

Query: 63  SVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           +  +   +Q    +L +  +   ++ + K +T     +S
Sbjct: 70  TENLVQLMQNNTTMLDNLQVLSTAALVDKTVTVKSDQLS 108


>gi|238911004|ref|ZP_04654841.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 232

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+ L  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTMLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|57169038|ref|ZP_00368166.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli
           RM2228]
 gi|57019583|gb|EAL56273.1| probable flagellar hook assembly protein Cj0042 [Campylobacter coli
           RM2228]
          Length = 287

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 40  SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
             L   S            IGK  T +D  I
Sbjct: 100 MQLLSNSFSTSMSTSAIGAIGKMATVSDNKI 130


>gi|167994040|ref|ZP_02575132.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205328048|gb|EDZ14812.1| basal-body rod modification protein FlgD [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|332988067|gb|AEF07050.1| flagellar basal body rod modification protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 232

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NTGVKTTTDSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTI 108


>gi|22126391|ref|NP_669814.1| flagellar basal body rod modification protein [Yersinia pestis KIM
           10]
 gi|45441410|ref|NP_992949.1| flagellar basal body rod modification protein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108807172|ref|YP_651088.1| flagellar basal body rod modification protein [Yersinia pestis
           Antiqua]
 gi|108812484|ref|YP_648251.1| flagellar basal body rod modification protein [Yersinia pestis
           Nepal516]
 gi|145598611|ref|YP_001162687.1| flagellar basal body rod modification protein [Yersinia pestis
           Pestoides F]
 gi|149366252|ref|ZP_01888287.1| basal-body rod modification protein FlgD [Yersinia pestis
           CA88-4125]
 gi|165925901|ref|ZP_02221733.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938661|ref|ZP_02227216.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010833|ref|ZP_02231731.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210989|ref|ZP_02237024.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401100|ref|ZP_02306603.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420264|ref|ZP_02312017.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425865|ref|ZP_02317618.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469719|ref|ZP_02334423.1| flagellar basal body rod modification protein [Yersinia pestis
           FV-1]
 gi|218928921|ref|YP_002346796.1| flagellar basal body rod modification protein [Yersinia pestis
           CO92]
 gi|229896241|ref|ZP_04511411.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
           A]
 gi|229897176|ref|ZP_04512332.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897902|ref|ZP_04513053.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902866|ref|ZP_04517983.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
 gi|270486646|ref|ZP_06203720.1| flagellar hook capping protein [Yersinia pestis KIM D27]
 gi|294504031|ref|YP_003568093.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003]
 gi|21959378|gb|AAM86065.1|AE013854_1 basal-body rod modification protein [Yersinia pestis KIM 10]
 gi|45436271|gb|AAS61826.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776132|gb|ABG18651.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
 gi|108779085|gb|ABG13143.1| basal-body rod modification protein FlgD [Yersinia pestis Antiqua]
 gi|115347532|emb|CAL20441.1| basal-body rod modification protein FlgD [Yersinia pestis CO92]
 gi|145210307|gb|ABP39714.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
           F]
 gi|149292665|gb|EDM42739.1| basal-body rod modification protein FlgD [Yersinia pestis
           CA88-4125]
 gi|165913275|gb|EDR31897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922105|gb|EDR39282.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990177|gb|EDR42478.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166208169|gb|EDR52649.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961959|gb|EDR57980.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049489|gb|EDR60897.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055264|gb|EDR65061.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680313|gb|EEO76412.1| basal-body rod modification protein FlgD [Yersinia pestis Nepal516]
 gi|229688943|gb|EEO81008.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693513|gb|EEO83562.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701164|gb|EEO89193.1| basal-body rod modification protein FlgD [Yersinia pestis Pestoides
           A]
 gi|262361783|gb|ACY58504.1| basal-body rod modification protein FlgD [Yersinia pestis D106004]
 gi|262366081|gb|ACY62638.1| basal-body rod modification protein FlgD [Yersinia pestis D182038]
 gi|270335150|gb|EFA45927.1| flagellar hook capping protein [Yersinia pestis KIM D27]
 gi|294354490|gb|ADE64831.1| basal-body rod modification protein FlgD [Yersinia pestis Z176003]
 gi|320015468|gb|ADV99039.1| basal-body rod modification protein FlgD [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 225

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+    
Sbjct: 29  QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG+ +     +I
Sbjct: 89  ATSLIGRGVMVPGTNI 104


>gi|313497760|gb|ADR59126.1| FlgD [Pseudomonas putida BIRD-1]
          Length = 233

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             ++ + S   +   LG+DAFL+LL+TQ+++Q+P +P +  E VAQLA FS +E    +N
Sbjct: 21  QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADGS 96
             +  +   L+S+   QASS +G+N+      
Sbjct: 81  DAVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112


>gi|324113870|gb|EGC07844.1| flagellar hook capping protein [Escherichia fergusonii B253]
 gi|325497617|gb|EGC95476.1| flagellar basal body rod modification protein [Escherichia
           fergusonii ECD227]
          Length = 231

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           + +     T    S +       Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S + 
Sbjct: 9   DASNNGVSTTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
              ++N+TL  +   + ++   QASS IG  +     +I
Sbjct: 69  GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107


>gi|162419120|ref|YP_001606472.1| flagellar basal body rod modification protein [Yersinia pestis
           Angola]
 gi|162351935|gb|ABX85883.1| basal-body rod modification protein FlgD [Yersinia pestis Angola]
          Length = 225

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+    
Sbjct: 29  QNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQIDSSQSLY 88

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG+ +     +I
Sbjct: 89  ATSLIGRGVMVPGTNI 104


>gi|325274801|ref|ZP_08140829.1| flagellar basal body rod modification protein [Pseudomonas sp.
           TJI-51]
 gi|324100069|gb|EGB97887.1| flagellar basal body rod modification protein [Pseudomonas sp.
           TJI-51]
          Length = 233

 Score = 73.5 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             ++ + S   +   LG+DAFL+LL+TQ+++Q+P +P +  E VAQLA FS +E    +N
Sbjct: 21  QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADGS 96
             +  +   L+S+   QASS +G+N+      
Sbjct: 81  DAVTYIAAGLQSSQALQASSLVGRNVVVQTDK 112


>gi|312884835|ref|ZP_07744527.1| flagellar basal body rod modification protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367487|gb|EFP95047.1| flagellar basal body rod modification protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 223

 Score = 73.5 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             +    + + +     Q+ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ +  M 
Sbjct: 18  ASSSLNVNTNPNSAGSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMT 77

Query: 68  STLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           +  Q    LL +  +   ++ +GK +        
Sbjct: 78  TMTQNSMVLLDNLQVLSTANLVGKTVYVPSDEFE 111


>gi|331017027|gb|EGH97083.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 229

 Score = 73.5 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
           LG+DAFL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E    +  T+  +    +S+  
Sbjct: 33  LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92

Query: 80  AQASSYIGKNITNADGSIS 98
            QASS +G+++     S +
Sbjct: 93  LQASSLVGRSVIIDSSSTT 111


>gi|118593644|ref|ZP_01551020.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
 gi|118433755|gb|EAV40416.1| flagellar hook capping protein [Stappia aggregata IAM 12614]
          Length = 219

 Score = 73.5 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
             + FL +L TQI++QDP +P+ ++E   QL  +S +EQ+++ N  L+E+   L SN   
Sbjct: 26  DYELFLSILTTQIQNQDPLDPLDSAEYTNQLVQYSSVEQAIKQNQNLEEIIASLTSNQSM 85

Query: 81  QASSYIGKNITNADGSIS 98
              SYIG  +T    + +
Sbjct: 86  GYVSYIGNEVTADASTTT 103


>gi|84514660|ref|ZP_01002024.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
 gi|84511711|gb|EAQ08164.1| Possible FlgD protein [Loktanella vestfoldensis SKA53]
          Length = 183

 Score = 73.5 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 31  LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
           +L  Q+K+QDP  P+++++   QLA FS +EQ+V  N  L+ L     ++  +S++GK +
Sbjct: 1   MLTAQMKNQDPLNPVESADFATQLATFSGVEQAVLTNDLLRGLSLQIGVSGLASWVGKEV 60

Query: 91  TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
                 +      + +    + A T     +   +G  +
Sbjct: 61  RAP-APVYFDGAPVTLHPNPMAAATAGEIVVRDASGAVV 98


>gi|153001473|ref|YP_001367154.1| flagellar basal body rod modification protein [Shewanella baltica
           OS185]
 gi|160876204|ref|YP_001555520.1| flagellar basal body rod modification protein [Shewanella baltica
           OS195]
 gi|151366091|gb|ABS09091.1| flagellar hook capping protein [Shewanella baltica OS185]
 gi|160861726|gb|ABX50260.1| flagellar hook capping protein [Shewanella baltica OS195]
 gi|315268394|gb|ADT95247.1| flagellar hook capping protein [Shewanella baltica OS678]
          Length = 256

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
                + L QD F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N     L  
Sbjct: 50  PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109

Query: 73  LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           ++ S+   QAS  +G+ +     + +G ++A   +  G+ +      EI + 
Sbjct: 110 VMTSSQALQASGLVGRKVLIP--TDTGNISAESPTMKGVVSTPDKIPEITVR 159


>gi|238751761|ref|ZP_04613249.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
 gi|238710032|gb|EEQ02262.1| Flagellar hook capping protein [Yersinia rohdei ATCC 43380]
          Length = 230

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   L S+   Q
Sbjct: 34  QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQLDSSQSLQ 93

Query: 82  ASSYIGKNITNADGSI-SGVVNAI 104
           AS+ IG  +     SI SG  + +
Sbjct: 94  ASTLIGHGVMIPGTSILSGTKDGV 117


>gi|258625235|ref|ZP_05720147.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
           VM603]
 gi|258582482|gb|EEW07319.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
           VM603]
          Length = 227

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +       +  +  T  Q+ F+ +++ QI++QDP  P+  +E V+QLA FSQ++   
Sbjct: 22  NNGSAGITGNPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSME 81

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            M+  +Q    LL +  +   +  +G+ +  +        +  +    G  A+   + ++
Sbjct: 82  NMSGLMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEF----DLGEKVQNGKIALDNASNQV 137

Query: 122 PI 123
            +
Sbjct: 138 TL 139


>gi|258622487|ref|ZP_05717509.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
           VM573]
 gi|262173353|ref|ZP_06041030.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           MB-451]
 gi|258585187|gb|EEW09914.1| Flagellar basal-body rod modification protein flgD [Vibrio mimicus
           VM573]
 gi|261890711|gb|EEY36698.1| flagellar basal-body rod modification protein FlgD [Vibrio mimicus
           MB-451]
          Length = 227

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +       +  +  T  Q+ F+ +++ QI++QDP  P+  +E V+QLA FSQ++   
Sbjct: 22  NNGSAGITGNPQDTNSATSLQNEFITMMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSIE 81

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            M+  +Q    LL +  +   +  +G+ +  +        +  +    G  A+   + ++
Sbjct: 82  NMSGLMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEF----DLGEKVQNGKIALDNASNQV 137

Query: 122 PI 123
            +
Sbjct: 138 TL 139


>gi|297538895|ref|YP_003674664.1| flagellar hook capping protein [Methylotenera sp. 301]
 gi|297258242|gb|ADI30087.1| flagellar hook capping protein [Methylotenera sp. 301]
          Length = 225

 Score = 73.5 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           ++      S +KS     QD F+ LLITQ+K+QDP  PM  ++  +Q+A  S +    ++
Sbjct: 16  LDSVNGTSSSAKSSVDTAQDRFMTLLITQMKNQDPLNPMDNAQVTSQMAQLSTVTGINKL 75

Query: 67  NSTLQELLKSNNLAQA---SSYIGKNITNADGSIS 98
           NST++ L+ S    Q+   ++ IG N+     S++
Sbjct: 76  NSTVESLMSSMQSGQSYQAANMIGHNVLVPGTSVT 110


>gi|26991078|ref|NP_746503.1| flagellar basal body rod modification protein [Pseudomonas putida
           KT2440]
 gi|24986113|gb|AAN69967.1|AE016635_3 flagellar basal-body rod modification protein FlgD [Pseudomonas
           putida KT2440]
          Length = 233

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             ++ + S   +   LG+DAFL+LL+TQ+++Q+P +P +  E VAQLA FS +E    +N
Sbjct: 21  QTSKTDSSTGAAGSALGKDAFLQLLVTQMQNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADGS 96
             +  +   L+S+   QASS +G+N+      
Sbjct: 81  DAVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112


>gi|254294562|ref|YP_003060585.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
 gi|254043093|gb|ACT59888.1| flagellar hook capping protein [Hirschia baltica ATCC 49814]
          Length = 222

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
            + + +    ++S+S      D FL LL  Q+++QDP EP  ++E   QL  FS +EQ +
Sbjct: 9   NQSSGSTSNSAQSQSALASDFDTFLTLLTAQLQNQDPLEPTDSTEFTNQLVQFSGVEQQI 68

Query: 65  QMNSTLQELLKSNNLAQ---ASSYIGKNITNAD 94
           Q N  L++L+ SNN A     SSY+G+++    
Sbjct: 69  QTNDALEQLIASNNSATGAAMSSYLGQSVEINS 101


>gi|222824501|ref|YP_002576075.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
 gi|222539722|gb|ACM64823.1| flagellar hook assembly protein FlgD [Campylobacter lari RM2100]
          Length = 335

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
               L +DAFLKLL+ +++HQDPT+PM   + + Q A  S +E     N T+ +L+ +  
Sbjct: 41  PGAELDKDAFLKLLLIELQHQDPTDPMDTEKMLTQTAQLSALEMQDNTNKTMTQLVDAMT 100

Query: 79  LAQAS----------SYIGKNITNADGSI 97
             Q S          + +GK  T  D  +
Sbjct: 101 KLQNSIAASTGMSALAAVGKLATVKDDYL 129


>gi|315497295|ref|YP_004086099.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
 gi|315415307|gb|ADU11948.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
          Length = 219

 Score = 73.5 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN--NLAQA 82
            + FL LL  Q+K+QDP  PM ++E  +QL  +S +EQ ++ N  L  L+  +  +L+ A
Sbjct: 28  YETFLSLLTAQLKNQDPLSPMDSTEWTSQLVQYSSVEQQIKTNDYLSTLVAQSGGSLSSA 87

Query: 83  SSYIGKNITNADGSIS 98
            +YIGK+IT    + +
Sbjct: 88  VNYIGKSITADTNTTT 103


>gi|322421728|ref|YP_004200951.1| flagellar hook capping protein [Geobacter sp. M18]
 gi|320128115|gb|ADW15675.1| flagellar hook capping protein [Geobacter sp. M18]
          Length = 221

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
           K    + +D FLKL +TQ+++QDP  P   ++ ++QLA  +Q+EQ+   N+ LQ LL   
Sbjct: 19  KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNTNLQNLLGQG 78

Query: 78  NL---AQASSYIGKNITNADGSIS 98
           +      A S IGK +      + 
Sbjct: 79  SNAGTLAAVSLIGKQVEAPGSQVE 102


>gi|226939375|ref|YP_002794448.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
 gi|226714301|gb|ACO73439.1| flagellar hook capping protein [Laribacter hongkongensis HLHK9]
          Length = 239

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                  +K+KS+    QD FLKLLITQ++ QDP  P+   +  +Q+A  S ++   ++N
Sbjct: 16  AGINGTNTKTKSEADEIQDRFLKLLITQLQTQDPLNPLDNYQMTSQMAQISSVQGIEKLN 75

Query: 68  STLQELLK---SNNLAQASSYIGKNITNADG 95
           S++  L +   ++    A+  IG        
Sbjct: 76  SSVSALTEAYAASQAFAAAGMIGHVSLIEGS 106


>gi|188592116|ref|YP_001796714.1| flagellar basal body rod modification protein [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938490|emb|CAP63477.1| FlgD: Basal-body rod modification protein [Cupriavidus taiwanensis
           LMG 19424]
          Length = 221

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +             +  +  Q+ FL +L+TQ+ +QDP  PM  ++  +QLA  S +  
Sbjct: 7   VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66

Query: 63  SVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
              MN+TL +LL    ++    +++ IG+ +      +
Sbjct: 67  MQTMNATLSQLLGQVSASRAMDSAALIGRTVMVPGKQV 104


>gi|332701536|ref|ZP_08421624.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551685|gb|EGJ48729.1| flagellar hook capping protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 232

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +++ + +N T  E + ++   +L QD FL++L+ Q++ QDPTEP   ++ V Q+  ++Q+
Sbjct: 3   IDVTSYLNSTMPE-ADTEPSSSLDQDDFLQILVAQLEQQDPTEPTDNAQMVDQMTSYAQL 61

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
           EQ   +++ +  L   + S    QA+ YIG  +     +++    +I 
Sbjct: 62  EQLTNISTAMDTLIAGMASLGATQAAGYIGMGVEAGGYTVAKKGESIS 109


>gi|284925345|gb|ADC27697.1| flagellar basal body rod modification protein [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S     L +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 40  SNPNAALDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
                 S            IGK  T +D  I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130


>gi|197120192|ref|YP_002140619.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
 gi|197089552|gb|ACH40823.1| flagellar hook capping protein FlgD [Geobacter bemidjiensis Bem]
          Length = 221

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
           K    + +D FLKL +TQ+++QDP  P   ++ ++QLA  +Q+EQ+   NS LQ +L   
Sbjct: 19  KKSTGMNKDDFLKLFVTQLQNQDPLNPQDGTQFISQLAQLTQVEQAYNTNSNLQNMLNQG 78

Query: 75  KSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
            ++    A + IGK +      +     +  
Sbjct: 79  SNSATLAAVTLIGKQVEAQGNQLELKSGSPS 109


>gi|167034945|ref|YP_001670176.1| flagellar basal body rod modification protein [Pseudomonas putida
           GB-1]
 gi|166861433|gb|ABY99840.1| flagellar hook capping protein [Pseudomonas putida GB-1]
          Length = 233

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             ++   +   +   LG+DAFL+LL+TQ+K+Q+P +P +  E VAQLA FS +E    +N
Sbjct: 21  QASKNNSNTGAAGSALGKDAFLQLLVTQMKNQNPLDPQENGEFVAQLAQFSSLESMQSLN 80

Query: 68  STLQEL---LKSNNLAQASSYIGKNITNADGS 96
            ++  +   L+S+   QASS +G+N+      
Sbjct: 81  DSVTYIAAGLQSSQALQASSLVGRNVIVQTDK 112


>gi|28869139|ref|NP_791758.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967583|ref|ZP_03395731.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
           tomato T1]
 gi|301385712|ref|ZP_07234130.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060076|ref|ZP_07251617.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302134835|ref|ZP_07260825.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28852379|gb|AAO55453.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927884|gb|EEB61431.1| basal-body rod modification protein FlgD [Pseudomonas syringae pv.
           tomato T1]
          Length = 229

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
           LG+DAFL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E    +  T+  +    +S+  
Sbjct: 33  LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTKTVDTIASSYQSSQA 92

Query: 80  AQASSYIGKNITNADGSIS 98
            QASS +G+++     S +
Sbjct: 93  LQASSLVGRSVIIDSSSTT 111


>gi|331005438|ref|ZP_08328817.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC1989]
 gi|330420714|gb|EGG95001.1| Flagellar basal-body rod modification protein FlgD [gamma
           proteobacterium IMCC1989]
          Length = 136

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           MEI +  N       +      + Q+ FL++L+ Q+ +QDP EP+  SE ++Q A  + +
Sbjct: 1   MEIESIGNSQSNTALQRAG---IDQEDFLQVLLAQLNYQDPLEPVDNSEFISQFAELTTL 57

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNIT--NADGSISGVVNAIQVSSTGLTAITV 116
            Q+   N  L  LL   ++ QA   IGK +   ++     G V  I  SS G   +TV
Sbjct: 58  TQTQSSNDKLDSLLTIQSVNQAVQLIGKTVEVNSSGSDTIGQVTTITFSSEGTPQMTV 115


>gi|157414367|ref|YP_001481623.1| flagellar basal body rod modification protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157385331|gb|ABV51646.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747009|gb|ADN90279.1| Flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931631|gb|EFV10596.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 40  SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
                 S            IGK  T +D  I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130


>gi|144900943|emb|CAM77807.1| basal-body rod modification protein flgD precursor
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 220

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLA 80
             D F++LL  Q+++QDP +P  A+E   QL  +S +EQ +  N  L E+L S    +++
Sbjct: 25  DYDMFIQLLCAQLENQDPLDPTDATEFTNQLVQYSNLEQQMATNDKLDEVLSSIDLMSMS 84

Query: 81  QASSYIGKNITNADGSIS----GVVNAIQVSSTGLTAITV 116
               Y+G  +     +IS    G V+A  V S    A  V
Sbjct: 85  SGVGYMGHTVEAEGDTISVQDDGTVDAAWVYSLDSAATDV 124


>gi|57237056|ref|YP_178068.1| flagellar basal body rod modification protein [Campylobacter jejuni
           RM1221]
 gi|86149626|ref|ZP_01067856.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86151430|ref|ZP_01069645.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86154065|ref|ZP_01072266.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597673|ref|ZP_01100906.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121613172|ref|YP_999768.1| flagellar basal body rod modification protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|148926856|ref|ZP_01810534.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|167004742|ref|ZP_02270500.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356433|ref|ZP_03223197.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561734|ref|YP_002343513.1| flagellar basal body rod modification protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315123657|ref|YP_004065661.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|57165860|gb|AAW34639.1| flagellar hook assembly protein [Campylobacter jejuni RM1221]
 gi|85839894|gb|EAQ57153.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85841777|gb|EAQ59024.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842479|gb|EAQ59693.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87248965|gb|EAQ71927.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88189977|gb|EAQ93953.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359440|emb|CAL34222.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|145844433|gb|EDK21541.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345620|gb|EDZ32259.1| flagellar hook protein flgE [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|315017379|gb|ADT65472.1| putative flagellar hook assembly protein [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315057483|gb|ADT71812.1| Flagellar basal-body rod modification protein FlgD [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315929147|gb|EFV08372.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 294

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 40  SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
                 S            IGK  T +D  I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130


>gi|218549197|ref|YP_002382988.1| flagellar basal body rod modification protein [Escherichia
           fergusonii ATCC 35469]
 gi|218356738|emb|CAQ89366.1| flagellar hook assembly protein [Escherichia fergusonii ATCC 35469]
          Length = 231

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           + +          S +       Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S + 
Sbjct: 9   DASNNGVSNTSNNSLTGGNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVS 68

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
              ++N+TL  +   + ++   QASS IG  +     +I
Sbjct: 69  GIEKLNTTLGAISGQIDNSQSLQASSLIGHGVMIPGTTI 107


>gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella
           oneidensis MR-1]
 gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis
           MR-1]
          Length = 253

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
                      + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 41  PSNSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQ 100

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +     + +G ++A      G+ + +     I I 
Sbjct: 101 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYISAESPGLNGVISTSEKIPVINIR 156


>gi|46906947|ref|YP_013336.1| flagellar basal body rod modification protein [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47091658|ref|ZP_00229454.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
           4b H7858]
 gi|217965206|ref|YP_002350884.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
 gi|226223327|ref|YP_002757434.1| flagellar hook assembly protein [Listeria monocytogenes Clip81459]
 gi|254824024|ref|ZP_05229025.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           J1-194]
 gi|254853100|ref|ZP_05242448.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           R2-503]
 gi|254932024|ref|ZP_05265383.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
           HPB2262]
 gi|254994098|ref|ZP_05276288.1| flagellar basal body rod modification protein [Listeria
           monocytogenes FSL J2-064]
 gi|255521909|ref|ZP_05389146.1| flagellar basal body rod modification protein [Listeria
           monocytogenes FSL J1-175]
 gi|290893993|ref|ZP_06556968.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           J2-071]
 gi|300764508|ref|ZP_07074501.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           N1-017]
 gi|46880213|gb|AAT03513.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019977|gb|EAL10714.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
           4b H7858]
 gi|217334476|gb|ACK40270.1| flagellar hook capping protein [Listeria monocytogenes HCC23]
 gi|225875789|emb|CAS04492.1| Putative flagellar hook assembly protein [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606449|gb|EEW19057.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           R2-503]
 gi|290556439|gb|EFD89978.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           J2-071]
 gi|293583576|gb|EFF95608.1| flagellar hook assembly protein FlgD [Listeria monocytogenes
           HPB2262]
 gi|293593252|gb|EFG01013.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           J1-194]
 gi|300514862|gb|EFK41916.1| flagellar hook assembly protein FlgD [Listeria monocytogenes FSL
           N1-017]
 gi|307570235|emb|CAR83414.1| flagellar hook assembly protein [Listeria monocytogenes L99]
 gi|313610130|gb|EFR85449.1| flagellar hook capping protein [Listeria monocytogenes FSL F2-208]
 gi|328467263|gb|EGF38343.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 1816]
 gi|328475659|gb|EGF46408.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 220]
 gi|332311121|gb|EGJ24216.1| Flagellar hook assembly protein FlgD [Listeria monocytogenes str.
           Scott A]
          Length = 140

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +           S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +  +
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPMTYVTEIN 140


>gi|258592497|emb|CBE68806.1| putative basal-body rod modification protein flgD [NC10 bacterium
           'Dutch sediment']
          Length = 234

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 15/109 (13%)

Query: 1   MEINTEVNPT------QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQL 54
           MEI      T          + S   + LG+DAFLKLL+ Q+++Q+P  P++ ++ +AQ 
Sbjct: 1   MEITNGSTTTVQSPQGAGAATSSALDRGLGKDAFLKLLVAQLRNQNPLNPLQGTDFIAQT 60

Query: 55  AVFSQMEQSVQMNSTLQELLKSNNLAQA---------SSYIGKNITNAD 94
           A F+ +EQ  Q+N+++ +L  S+              SSYIGK +T   
Sbjct: 61  AQFTSLEQLQQINASIAQLSASSAATSGSNSLDAVLASSYIGKVVTANG 109


>gi|126175147|ref|YP_001051296.1| flagellar basal body rod modification protein [Shewanella baltica
           OS155]
 gi|125998352|gb|ABN62427.1| flagellar hook capping protein [Shewanella baltica OS155]
          Length = 256

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
                + L QD F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N     L  
Sbjct: 50  PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDEIVNLNS 109

Query: 73  LLKSNNLAQASSYIGKNITNADG---------SISGVVNAIQVSSTGLTAITVDNTEIPI 123
           ++ S+   QAS  +G+ +              +I GV++           +  +  ++  
Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDTGNISAESPTIKGVISTPSKIPELSVRVEDEKGQVVA 169

Query: 124 TTGIRISN 131
           T  +  S+
Sbjct: 170 TFKVDGSD 177


>gi|315926888|gb|EFV06254.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315926905|gb|EFV06271.1| flagellar hook capping family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 294

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 40  SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 99

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
                 S            IGK  T +D  I
Sbjct: 100 MQKLSDSFSTSMSTSALGAIGKMATVSDNKI 130


>gi|305432528|ref|ZP_07401690.1| flagellar hook assembly protein [Campylobacter coli JV20]
 gi|304444567|gb|EFM37218.1| flagellar hook assembly protein [Campylobacter coli JV20]
          Length = 286

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           S    TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++
Sbjct: 39  SNPNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVET 98

Query: 77  NNLAQAS----------SYIGKNITNADGSI 97
             L   S            IGK  T +D  I
Sbjct: 99  MQLLSNSFSTSMSTSAIGAIGKMATVSDNKI 129


>gi|16802738|ref|NP_464223.1| flagellar basal body rod modification protein [Listeria
           monocytogenes EGD-e]
 gi|47095262|ref|ZP_00232873.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
           1/2a F6854]
 gi|116872085|ref|YP_848866.1| flagellar basal body rod modification protein [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|224498778|ref|ZP_03667127.1| flagellar basal body rod modification protein [Listeria
           monocytogenes Finland 1988]
 gi|224501999|ref|ZP_03670306.1| flagellar basal body rod modification protein [Listeria
           monocytogenes FSL R2-561]
 gi|254829353|ref|ZP_05234040.1| flgD [Listeria monocytogenes FSL N3-165]
 gi|254830313|ref|ZP_05234968.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 10403S]
 gi|254900068|ref|ZP_05259992.1| flagellar basal body rod modification protein [Listeria
           monocytogenes J0161]
 gi|254911379|ref|ZP_05261391.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
 gi|254935706|ref|ZP_05267403.1| flgD [Listeria monocytogenes F6900]
 gi|255028842|ref|ZP_05300793.1| flagellar basal body rod modification protein [Listeria
           monocytogenes LO28]
 gi|284801026|ref|YP_003412891.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 08-5578]
 gi|284994168|ref|YP_003415936.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 08-5923]
 gi|16410085|emb|CAC98774.1| lmo0696 [Listeria monocytogenes EGD-e]
 gi|47016333|gb|EAL07255.1| flagellar hook assembly protein FlgD [Listeria monocytogenes str.
           1/2a F6854]
 gi|116740963|emb|CAK20083.1| flagellar hook assembly protein FlgD [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|258601766|gb|EEW15091.1| flgD [Listeria monocytogenes FSL N3-165]
 gi|258608289|gb|EEW20897.1| flgD [Listeria monocytogenes F6900]
 gi|284056588|gb|ADB67529.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 08-5578]
 gi|284059635|gb|ADB70574.1| flagellar basal body rod modification protein [Listeria
           monocytogenes 08-5923]
 gi|293589316|gb|EFF97650.1| flagellar hook assembly protein FlgD [Listeria monocytogenes J2818]
          Length = 140

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 74/133 (55%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +  +        S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +  +
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDN 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPMTYVTEIN 140


>gi|297183503|gb|ADI19633.1| flagellar hook capping protein [uncultured delta proteobacterium
           HF0770_45N15]
          Length = 262

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 3   INTEVNPTQQEFSKSKSKK-TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           I T  +  Q   ++  +    LG+  FL LL+TQ+ +QDPT+PMK  + + Q+A    +E
Sbjct: 10  ITTAKSTQQNMTARGTADNRELGKQDFLNLLMTQLANQDPTDPMKPEQMMQQMASLGTVE 69

Query: 62  QSVQMNSTLQELLKSNNL---AQASSYIGKNITNADGSI---SGVVNAIQVS 107
           Q   +N+  ++++        A ASS +G+++     S+   SGV   +   
Sbjct: 70  QLQNLNAQTRQVIGLQKQIARASASSLLGRDVEVGSTSLSVQSGVTQPVSFK 121


>gi|95928664|ref|ZP_01311411.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135454|gb|EAT17106.1| flagellar hook capping protein [Desulfuromonas acetoxidans DSM 684]
          Length = 220

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
            + S K LG+  FL+LL+ Q+++QDP EP   +E +AQLA FS +EQ    N+ L  ++ 
Sbjct: 18  ATASSKALGEADFLELLVAQLENQDPLEPQSNTEFIAQLATFSSLEQQTMTNNKLDSVIS 77

Query: 76  S---NNLAQASSYIGKNITNADGSISGVVNAIQV 106
           +            +GK +     +     + +++
Sbjct: 78  ATADMQQLAGIDMLGKTVVAQSDNFYLNGDQVEI 111


>gi|254456986|ref|ZP_05070414.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
 gi|207085778|gb|EDZ63062.1| flagellar hook capping protein [Campylobacterales bacterium GD 1]
          Length = 221

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   N      + +  K  LG+D F+ LL+ +++HQDPTEPM + + + Q +  + +E 
Sbjct: 8   LNAATNVDTVASTAAVDKTVLGKDDFMTLLLVELQHQDPTEPMDSEKILTQTSQLAGLES 67

Query: 63  SVQMNSTLQELLKSNNLAQA---SSYIGKNITNADGSI 97
           +   N  L+ L  S + +Q     S IGK       +I
Sbjct: 68  AENTNKALESLAASLSASQNFSSISAIGKTADLGSNAI 105


>gi|223039165|ref|ZP_03609455.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
 gi|222879526|gb|EEF14617.1| flagellar hook assembly protein [Campylobacter rectus RM3267]
          Length = 234

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
           Q+ + +     L +DAF+KLL+T++++QDPT PM   + + Q +  + +E     N  +Q
Sbjct: 25  QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNKMMQ 84

Query: 72  EL---LKSNNLAQASSYIGKNITNADGSI 97
           +L   LK++    A S +GK     D  I
Sbjct: 85  KLADQLKNSTNMYAVSVLGKMAKIGDSGI 113


>gi|311992299|gb|ADQ26723.1| hook capping protein [Aeromonas hydrophila]
          Length = 241

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
            KK L Q++FLKLL  Q+ +QDP +P+  ++ ++Q+   S  +    +++   +L  L+ 
Sbjct: 24  PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 83

Query: 76  SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           S+   QAS+ +G+N+           DGS+ GVV     +      IT+++  
Sbjct: 84  SSQALQASALVGQNVLLQSNVGYLEKDGSLQGVVAVGTENKYSNVKITIEDES 136


>gi|260779348|ref|ZP_05888240.1| flagellar basal-body rod modification protein FlgD [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605512|gb|EEX31807.1| flagellar basal-body rod modification protein FlgD [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 226

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +     +     +  +  T  ++ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ +
Sbjct: 17  SGANTTSVTGNPQDANSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQST 76

Query: 64  VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             M S +Q    LL +  +   +  +G+ +  +     
Sbjct: 77  ENMASMMQNSMVLLDNMQVLSTAGLVGQTVFVSGNEFE 114


>gi|302185584|ref|ZP_07262257.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. syringae 642]
          Length = 229

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N+  NPT    + + +   LG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 16  LNSLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++    GS S
Sbjct: 73  MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSGSTS 111


>gi|315637838|ref|ZP_07893028.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
 gi|315482079|gb|EFU72693.1| flagellar hook assembly protein [Campylobacter upsaliensis JV21]
          Length = 285

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
                   +    ++      L +DAFLKLL+ +++HQDPT+PM + + + Q +  + +E
Sbjct: 20  NTTQNNGGSLTPNNQGNPGAVLDKDAFLKLLLIEMQHQDPTDPMDSDKMLTQTSQLAALE 79

Query: 62  QSVQMNSTLQELLKSN----------NLAQASSYIGKNITNADGSI 97
                N+T+Q+++                 A   IGK  T AD  I
Sbjct: 80  MQQNTNNTMQQMVAQMEKLSNAMGTSQSIGALGAIGKMATIADNKI 125


>gi|302382559|ref|YP_003818382.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
          15264]
 gi|302193187|gb|ADL00759.1| flagellar hook capping protein [Brevundimonas subvibrioides ATCC
          15264]
          Length = 222

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          ++  T         + +++  T   + FL LL +Q+K+QDP  P+ +++   QL   S +
Sbjct: 2  VDAVTTTTEAASRTTAARTSLTSNFETFLSLLTSQLKNQDPLSPLDSNQFTQQLTQMSGV 61

Query: 61 EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92
          EQ +  N  L       +   L  A++YIGK+ T 
Sbjct: 62 EQQLMTNDLLTSLLAAQQGGGLGGAANYIGKDATA 96


>gi|157959903|ref|YP_001499937.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
 gi|157844903|gb|ABV85402.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
          Length = 219

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           +++     T    +   +     ++ F+ L+I QI++QDPT P+  +E V+QLA FSQ+E
Sbjct: 5   DVSNTSGATDNIQNSPGNDAASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVE 64

Query: 62  QSVQM--NSTLQE-LLKSNNLAQASSYIGKNITNADGSIS 98
               M  N ++Q  ++++  + Q++  +GKN        +
Sbjct: 65  SLEHMRTNQSMQMVMMENLGIVQSAQLVGKNAMVPAADFT 104


>gi|163742531|ref|ZP_02149917.1| basal-body rod modification protein FlgD [Phaeobacter
          gallaeciensis 2.10]
 gi|161384116|gb|EDQ08499.1| basal-body rod modification protein FlgD [Phaeobacter
          gallaeciensis 2.10]
          Length = 230

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           K  +      + FLK+L  Q ++QDP EP+ ++E  AQLA FS +EQ VQ N  L+ + 
Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83

Query: 75 KSNNLAQASSYIG 87
              LA  ++  G
Sbjct: 84 AQLGLANMAAMSG 96


>gi|254475002|ref|ZP_05088388.1| flagellar hook capping protein [Ruegeria sp. R11]
 gi|214029245|gb|EEB70080.1| flagellar hook capping protein [Ruegeria sp. R11]
          Length = 228

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            K  +      + FLK+L  Q ++QDP EP+ ++E  AQLA FS +EQ VQ N  L  +
Sbjct: 21 TPKKATGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNDLLTAM 80

Query: 74 LKSNNLAQASSYIG 87
               LA  ++  G
Sbjct: 81 QAQLGLANMAAMSG 94


>gi|288940408|ref|YP_003442648.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
 gi|288895780|gb|ADC61616.1| flagellar hook capping protein [Allochromatium vinosum DSM 180]
          Length = 236

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+         S       LGQ  FLKL+ITQ+ +QDPT P++  +  +Q+A FS +   
Sbjct: 21  NSTTGTAAGTASTGSGNNALGQSDFLKLMITQLTNQDPTNPVENEDFASQMAQFSTLTGI 80

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNA 93
            ++ S+ + L   L      +A++ +G+++   
Sbjct: 81  EELTSSFETLSKTLLQGQTVEAATLVGQSVLVP 113


>gi|150019074|ref|YP_001311328.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905539|gb|ABR36372.1| flagellar hook capping protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 339

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           + + +     +      K+  T+ +++FLK+L  Q+ + DPT+   +S  V+Q+A F+ M
Sbjct: 13  VNVVSSGTTDRGTKILRKTDNTMDKNSFLKILSAQLSNLDPTQNQDSSAYVSQMAQFASM 72

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTA-ITVDNT 119
           EQ   +N+T+ +   S       + I     N    I G V  +   S G    + V+  
Sbjct: 73  EQMQNLNTTMSD--SSYQQMVGRTVITNEKDNNGSYIQGYVTQVLKESGGTYLNMLVNGK 130

Query: 120 EIPIT 124
           E  I 
Sbjct: 131 EAKIA 135


>gi|309779446|ref|ZP_07674207.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA]
 gi|308921687|gb|EFP67323.1| basal-body rod modification protein FlgD [Ralstonia sp. 5_7_47FAA]
          Length = 218

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 49/80 (61%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
           +K +  Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +L  N 
Sbjct: 24  TKGSDLQNTFMQLLVAQLKNQDPLNPMDNSQMTSQLAQINTVNGIQQLNTTMSSMLTQNA 83

Query: 79  LAQASSYIGKNITNADGSIS 98
             QASS IG+++     +++
Sbjct: 84  TTQASSMIGRSVQVPTNNLT 103


>gi|126734092|ref|ZP_01749839.1| flagellar basal-body rod modification protein, putative
          [Roseobacter sp. CCS2]
 gi|126716958|gb|EBA13822.1| flagellar basal-body rod modification protein, putative
          [Roseobacter sp. CCS2]
          Length = 220

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 1  MEINT---EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVF 57
          M++     +V  T    S + ++     + FL++L  Q+K+QDP  P+ +++   QLA F
Sbjct: 1  MDVTQPTQQVASTPPAPSAASTQIGSDFEVFLQMLTAQMKYQDPLNPVDSTDYATQLATF 60

Query: 58 SQMEQSVQMNSTLQELLKSNN---LAQASSYIGKNITNA 93
          S +EQ+V  N  L+ L    N   L   ++ +GK + + 
Sbjct: 61 SGVEQAVLTNDLLKSLTTQMNTGGLVDMAALVGKQVKST 99


>gi|163738073|ref|ZP_02145489.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
 gi|161388689|gb|EDQ13042.1| flagellar hook capping protein [Phaeobacter gallaeciensis BS107]
          Length = 230

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           K  +      + FLK+L  Q ++QDP EP+ ++E  AQLA FS +EQ VQ N  L+ + 
Sbjct: 24 PKKTTGIASDFETFLKMLTAQARYQDPLEPIDSTEYSAQLAQFSMVEQQVQGNEVLEGIQ 83

Query: 75 KSNNLAQASSYIG 87
              LA  ++  G
Sbjct: 84 AQLGLANMAAMSG 96


>gi|116694218|ref|YP_728429.1| flagellar basal body rod modification protein [Ralstonia eutropha
           H16]
 gi|113528717|emb|CAJ95064.1| flagellar basal body rod modification protein [Ralstonia eutropha
           H16]
          Length = 221

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +             +  +  Q+ FL +L+TQ+ +QDP  PM  ++  +QLA  S +  
Sbjct: 7   VGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSG 66

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSIS 98
              MN+TL +LL     +    +++ IG  +      +S
Sbjct: 67  MQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVS 105


>gi|255323567|ref|ZP_05364697.1| flagellar hook assembly protein [Campylobacter showae RM3277]
 gi|255299281|gb|EET78568.1| flagellar hook assembly protein [Campylobacter showae RM3277]
          Length = 234

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
           Q+ + +     L +DAF+KLL+T++++QDPT PM   + + Q +  + +E     N  +Q
Sbjct: 25  QKAAGTNPNAQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLASLEMQENTNKMMQ 84

Query: 72  EL---LKSNNLAQASSYIGKNITNADGSISGVVN 102
           +L   LK++    A   +GK     D   SG+V 
Sbjct: 85  KLADQLKNSTNMYAVGVLGKMAKIGD---SGIVK 115


>gi|56460253|ref|YP_155534.1| flagellar basal body rod modification protein [Idiomarina
           loihiensis L2TR]
 gi|56179263|gb|AAV81985.1| Flagellar hook capping protein [Idiomarina loihiensis L2TR]
          Length = 227

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
           +    +  L Q+ F +LL  Q+  QDP++P++  + +AQ+  F+  E    ++    +  
Sbjct: 24  ADPDERSKLEQEDFFRLLTEQLSMQDPSKPVENDQMIAQMTNFTMAEGITGLSERFDQFA 83

Query: 74  --LKSNNLAQASSYIGKNITNADGS--------ISGVVNAIQVSSTGLTAITVDNTEIPI 123
             + SN   QAS+ +G+ +              ++G++   Q +      I + ++    
Sbjct: 84  SDMTSNQALQASTMVGRKVLVPTDQANLETGAGVTGMIATPQSAQN--VKINIKDSTGAT 141

Query: 124 TTGIRISN 131
              I I +
Sbjct: 142 VKTIEIGD 149


>gi|146281770|ref|YP_001171923.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
           A1501]
 gi|145569975|gb|ABP79081.1| basal-body rod modification protein FlgD [Pseudomonas stutzeri
           A1501]
          Length = 226

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 13/120 (10%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNL 79
           LG+  F+ LL+TQ+ +Q+P +P   SE VAQLA FS +E    +N+++  LL   +S+  
Sbjct: 29  LGKTDFMMLLVTQLNNQNPLDPQDNSEFVAQLAQFSSLESMENLNASMTSLLSTYQSSQA 88

Query: 80  AQASSYIGKNITNADG--------SISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            QA+S +G ++    G        S+SG V  +  SS     + + ++   +   I + +
Sbjct: 89  LQATSLVGSSVIVETGSALVDTSESLSGTV--VMPSSGSNVNVKIYDSTGSLVKTISLGD 146


>gi|317492429|ref|ZP_07950858.1| flagellar hook capping protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919768|gb|EFV41098.1| flagellar hook capping protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 233

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ ++  N T    S +        ++FL LL+ Q+K+QDPT P++ +E  +QLA  + +
Sbjct: 11  VDNSSATNKTNGTNSLTSQNSQDLSNSFLTLLVAQLKNQDPTNPLQNNELTSQLAQINTV 70

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI-SGVVNAIQVSSTGLTAITV 116
               ++N+TL  +   + SN   QASS IG  +     +I +G       +ST      +
Sbjct: 71  SGIEKLNTTLGSISGQINSNQSLQASSLIGHGVMIPGKNILAGKEEGATTTSTTPFGFEL 130

Query: 117 DNTEIPITTGIRISN 131
           ++     +  + IS+
Sbjct: 131 ESG--AQSVVVTISD 143


>gi|171059413|ref|YP_001791762.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
 gi|170776858|gb|ACB34997.1| flagellar hook capping protein [Leptothrix cholodnii SP-6]
          Length = 224

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
             +  +         + S      D FLKLL+ Q+++QDP  PM  ++  +Q+A  + + 
Sbjct: 10  NSSASIYSQLSGSGSTASTTEASADRFLKLLVAQMQNQDPLSPMDNAQVTSQMAQINTVS 69

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
              ++N ++Q +          Q +  +G+ +  A 
Sbjct: 70  GIEKVNESIQAMGGQFTQMQALQGAQLVGQGVMVAG 105


>gi|152975164|ref|YP_001374681.1| flagellar basal body rod modification protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023916|gb|ABS21686.1| flagellar hook capping protein [Bacillus cytotoxicus NVH 391-98]
          Length = 174

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
             T  +  + K+   +G+D FLKL +T +++QDP   M   + + Q++  S MEQ   M 
Sbjct: 25  AGTTTKADEQKTPGVMGKDDFLKLFLTSLQYQDPFNAMDMDQMMNQMSQMSLMEQVQNMT 84

Query: 68  S---TLQELLKSNNLAQASSYIGKNITNA---DGSISGVVNAIQVSSTGLTAITVDNTEI 121
                L++ + +  L     ++GK I         ISG V+A+++++     + V +  +
Sbjct: 85  KAVNALKDTVNTTALDGGMKFLGKYILGPSTDGNQISGKVDAVRLAANNEIQLVVGDKIV 144

Query: 122 PITTGIRISN 131
            +     +S+
Sbjct: 145 LMKYVTNVSD 154


>gi|291562026|emb|CBL40842.1| Flagellar hook capping protein [butyrate-producing bacterium SS3/4]
          Length = 189

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 1   MEINTEVNPTQQE--FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
           + +++  NP Q     + S SK T+  ++F+KLL  Q+ +QD T PM  SE ++Q+   +
Sbjct: 5   ITVSSTANPYQAGVYSAGSNSKNTMDVNSFIKLLAAQLSNQDMTSPMDNSEMMSQMTNMA 64

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKNIT---------NADGSISGVVNAIQVSST 109
            ++    M  +L           A S IG+ +T          A+G   G V ++  +  
Sbjct: 65  MVQSLTAMTESLNTSAAVTTQTYAGSLIGQEVTVAVTDPDTGAANGVKYGKVISVDFTQG 124

Query: 110 G-LTAITVDNTEIPITTGIRIS 130
             +  +  D+T   +++ + + 
Sbjct: 125 DPVVRLEGDDTSYKMSSVLGVG 146


>gi|330961195|gb|EGH61455.1| flagellar basal body rod modification protein [Pseudomonas
          syringae pv. maculicola str. ES4326]
          Length = 214

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 6/98 (6%)

Query: 3  INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
          +NT  NPT    + + +   LG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 1  MNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 57

Query: 63 SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSI 97
             + +T+  +     S+   QASS +G+++     S 
Sbjct: 58 MQNLTTTVDTIASSYKSSQALQASSLVGRSVIIDSSST 95


>gi|302878275|ref|YP_003846839.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
 gi|302581064|gb|ADL55075.1| flagellar hook capping protein [Gallionella capsiferriformans ES-2]
          Length = 227

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +   +N T    + S +     QD F+KLL+TQ+K+QDP  PM  ++  +Q+A  S +  
Sbjct: 14  VFAALNGTSSTSTASATSAAASQDRFMKLLVTQLKNQDPLNPMDNAQMTSQMAQISTVSG 73

Query: 63  SVQMNSTLQELLKSN---NLAQASSYIGKNITNADG 95
             ++N+TLQ L  S       QA++ IG+ +     
Sbjct: 74  IDKLNATLQALSASMTPNQTLQAATMIGRGVLVTGN 109


>gi|148258442|ref|YP_001243027.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. BTAi1]
 gi|146410615|gb|ABQ39121.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            + +++       +FL LL TQ+ HQ+P +P+  ++   QL  F+Q+EQ ++ N+ L+ L
Sbjct: 28  SASARTGIADNFQSFLTLLTTQLNHQNPLDPLNVNQFTQQLVQFAQVEQQLKGNTLLERL 87

Query: 74  LK---SNNLAQASSYIGKNITNADGSIS 98
           ++   S    QA   +G+         S
Sbjct: 88  VEAQKSTQSTQALMLVGRTAVVDGSEAS 115


>gi|319764538|ref|YP_004128475.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
 gi|330826754|ref|YP_004390057.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
 gi|317119099|gb|ADV01588.1| flagellar hook capping protein [Alicycliphilus denitrificans BC]
 gi|329312126|gb|AEB86541.1| flagellar hook capping protein [Alicycliphilus denitrificans K601]
          Length = 220

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81
           QD FLKLL+ Q+ +QDP  P+  ++   Q+A  + +     +N T+Q + +        Q
Sbjct: 32  QDRFLKLLVAQLNNQDPMNPLDNAQMTTQMAQINTVTGLQTLNLTMQTMAEQFSTMQQIQ 91

Query: 82  ASSYIGKNI-------TNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
             S IG+++       + ADG+  G+ +    ++     I      +
Sbjct: 92  GISLIGRSVLSEGDRMSFADGTGKGMFDLAGAATNVKVDIVTAGGVV 138


>gi|152997583|ref|YP_001342418.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
 gi|150838507|gb|ABR72483.1| flagellar hook capping protein [Marinomonas sp. MWYL1]
          Length = 234

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
            Q+ FLKL I Q+K QDPT P   ++ VAQ++ FS +E+   ++  L+ +   L SN   
Sbjct: 42  DQNVFLKLYIEQLKGQDPTAPQDTNDMVAQMSQFSSLERLTSISDQLENMATSLTSNQAL 101

Query: 81  QASSYIGKNITNADGSI 97
            AS+ +GK+I      +
Sbjct: 102 SASTLVGKSILMDGSKV 118


>gi|117619792|ref|YP_857344.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561199|gb|ABK38147.1| flagellar hook capping protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
            KK L Q++FLKLL  Q+ +QDP +P+  ++ ++Q+   S  +    +++   +L  L+ 
Sbjct: 25  PKKELDQESFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSQGISSLSNQIGSLNSLMT 84

Query: 76  SNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           S+   QAS+ +G+N+           DGS+ GVV     +      IT+++  
Sbjct: 85  SSQALQASALVGQNVLLQSNVGYLEKDGSLPGVVAVGTENKYSNVKITIEDES 137


>gi|163750571|ref|ZP_02157809.1| flagellar basal body rod modification protein [Shewanella benthica
           KT99]
 gi|161329726|gb|EDQ00715.1| flagellar basal body rod modification protein [Shewanella benthica
           KT99]
          Length = 268

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            +++     S + L QD F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 56  PEEKSIPEASSQGLSQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMAAFSTVDGISKLNDE 115

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGS---------ISGVVNAIQVSSTGLTAITVD 117
              L  ++ S+   QAS  +G+ +     +         + GVV+  +   T +  I  D
Sbjct: 116 IINLNAVMTSSQALQASGLVGQKVLIPSDTGYLSEEGSVLKGVVSTPEAIETIVVRIEDD 175


>gi|23092314|gb|AAN08639.1| FlgD [Aeromonas hydrophila]
          Length = 244

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            +N     T Q    +  KK L Q +FLKLL  Q+ +QDP +P+  ++ ++Q++  S  E
Sbjct: 7   NVNGISRTTSQTAGTTTPKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMSSMSTSE 66

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTG 110
               +++ + +L   + S+   QASS +G+N+         + +GS+SGVV     +   
Sbjct: 67  GIASLSTQMGKLNDQMISSQALQASSLVGQNVLLQSNMGYLDKEGSLSGVVAVGTTNKYS 126

Query: 111 LTAITVDNTE 120
              IT++N +
Sbjct: 127 NIKITIENEK 136


>gi|260867438|ref|YP_003233840.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
           11128]
 gi|257763794|dbj|BAI35289.1| flagellar hook assembly protein FlgD [Escherichia coli O111:H- str.
           11128]
 gi|323175694|gb|EFZ61288.1| basal-body rod modification protein flgD [Escherichia coli 1180]
          Length = 231

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|256370962|ref|YP_003108786.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007546|gb|ACU53113.1| flagellar hook capping protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 159

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
            +L  + FL LL+T++++Q+P  PM  S+ V+Q +  S++E    + S L ++  S  + 
Sbjct: 24  ASLTANEFLNLLVTELQNQNPLSPMDPSQMVSQTSSLSEVELLSTIQSALTQMASSQGIL 83

Query: 81  QASSYIGKNITNAD--GSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            ASS IG+++T  D  G ++G V+ +  S+ G+  + V    +PI   I + 
Sbjct: 84  SASSLIGQSVTYQDGSGEVAGQVSGVGQSANGVV-LDVGGQSVPIANVIAVG 134


>gi|85712253|ref|ZP_01043304.1| flagellar basal body rod modification protein [Idiomarina baltica
           OS145]
 gi|85693880|gb|EAQ31827.1| flagellar basal body rod modification protein [Idiomarina baltica
           OS145]
          Length = 227

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
            E +    ++ L Q+ F KLL  Q+  QDPT+P+   + ++Q+  FS  E   Q++S   
Sbjct: 21  AEAADPSEQQKLEQEDFFKLLTEQLNMQDPTKPVDNDQMISQMTSFSMAEGISQLSSQFT 80

Query: 72  EL---LKSNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITV 116
           +    + SN   QAS+ +G+++            G+ +G +   Q        I  
Sbjct: 81  QFTQNMSSNQALQASTMVGRDVLVPSNKTFVESGGTATGAIALEQSGYGTKVTIKD 136


>gi|28900121|ref|NP_799776.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153837050|ref|ZP_01989717.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260365771|ref|ZP_05778267.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus K5030]
 gi|260880693|ref|ZP_05893048.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260897701|ref|ZP_05906197.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus Peru-466]
 gi|260899388|ref|ZP_05907783.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ4037]
 gi|1272367|gb|AAA97475.1| LfgD [Vibrio parahaemolyticus]
 gi|28808404|dbj|BAC61609.1| LfgD [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749638|gb|EDM60383.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308086232|gb|EFO35927.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308091965|gb|EFO41660.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308109288|gb|EFO46828.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308114994|gb|EFO52534.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus K5030]
 gi|328470100|gb|EGF41011.1| flagellar basal body rod modification protein [Vibrio
           parahaemolyticus 10329]
          Length = 227

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
               K+  +  Q+ F+ L++ QI++QDP  P+  +E V QLA FSQ++ +  M+  +Q  
Sbjct: 28  NPTDKNSASSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNS 87

Query: 73  --LLKSNNLAQASSYIGKNITNADGSIS 98
             LL +  +   +  +G+ +        
Sbjct: 88  MVLLDNMQVLSTAGLVGQTVYVNSKEFE 115


>gi|153948005|ref|YP_001399633.1| flagellar basal body rod modification protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959500|gb|ABS46961.1| basal-body rod modification protein FlgD [Yersinia
           pseudotuberculosis IP 31758]
          Length = 218

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M+IN   N           +  L       + F+ LL+ QIK+QDP  P   +E V+Q+A
Sbjct: 1   MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             SQ++ +  M   L+     +        ++ +G+ +      ++
Sbjct: 61  QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVESNEMT 106


>gi|307137710|ref|ZP_07497066.1| flagellar basal body rod modification protein [Escherichia coli
           H736]
 gi|331641619|ref|ZP_08342754.1| basal-body rod modification protein FlgD [Escherichia coli H736]
 gi|331038417|gb|EGI10637.1| basal-body rod modification protein FlgD [Escherichia coli H736]
          Length = 231

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|167623360|ref|YP_001673654.1| flagellar basal body rod modification protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353382|gb|ABZ75995.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
          Length = 267

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            Q+      + + L Q+ F  LL  Q+  QDP +P+   + + Q+A FS ++   ++N  
Sbjct: 55  PQESSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEE 114

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSIS 98
              L  L  S+   QAS  +G+ +     +  
Sbjct: 115 IGNLNALTSSSQALQASGLVGQKVLIPSDTAH 146


>gi|239995126|ref|ZP_04715650.1| flagellar basal body rod modification protein [Alteromonas
           macleodii ATCC 27126]
 gi|332140545|ref|YP_004426283.1| flagellar basal body rod modification protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327550567|gb|AEA97285.1| flagellar basal body rod modification protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 228

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
              +++ L Q+ F  +L  Q+ +QDPT P+   + VAQ+  F+  +   Q+N   +    
Sbjct: 23  ADGTEQQLTQEDFFSMLTEQLANQDPTAPVDNDQMVAQMTSFTMADGISQLNEKFESFAA 82

Query: 74  -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            + SN   QASS IG+N+      + G V  +     G++ + V+   +
Sbjct: 83  SMTSNQALQASSLIGQNVL-----VQGNVGYMANEGDGISGVIVNEKTV 126


>gi|15801192|ref|NP_287209.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 EDL933]
 gi|12514613|gb|AAG55821.1|AE005317_10 flagellar biosynthesis, initiation of hook assembly [Escherichia
           coli O157:H7 str. EDL933]
          Length = 231

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|212637784|ref|YP_002314309.1| flagellar hook capping protein [Shewanella piezotolerans WP3]
 gi|212559268|gb|ACJ31722.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
          Length = 221

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 1   MEINTEVNPTQQEFS-----KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M + +  N +    S        +     ++ F+ L+I QIK+QDPT P+  +E V QLA
Sbjct: 1   MNVTSTSNNSDVASSADVMNSPGNDAAAIKNEFMTLMIAQIKNQDPTNPIDGTEYVTQLA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNA 93
            FSQ+E   QM +       ++++  + Q++  +GKN    
Sbjct: 61  QFSQVESLEQMRANQSSQMVMMENLGIVQSAHLVGKNAMVP 101


>gi|194438126|ref|ZP_03070219.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
 gi|253773901|ref|YP_003036732.1| flagellar basal body rod modification protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161181|ref|YP_003044289.1| flagellar basal body rod modification protein [Escherichia coli B
           str. REL606]
 gi|300928373|ref|ZP_07143907.1| flagellar hook capping protein [Escherichia coli MS 187-1]
 gi|194423062|gb|EDX39056.1| flagellar hook capping protein FlgD [Escherichia coli 101-1]
 gi|242376879|emb|CAQ31596.1| flagellar biosynthesis, initiation of hook assembly [Escherichia
           coli BL21(DE3)]
 gi|253324945|gb|ACT29547.1| flagellar hook capping protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973082|gb|ACT38753.1| flagellar basal body rod modification protein D [Escherichia coli B
           str. REL606]
 gi|253977296|gb|ACT42966.1| flagellar basal body rod modification protein D [Escherichia coli
           BL21(DE3)]
 gi|300463631|gb|EFK27124.1| flagellar hook capping protein [Escherichia coli MS 187-1]
 gi|323962674|gb|EGB58252.1| flagellar hook capping protein [Escherichia coli H489]
 gi|323973336|gb|EGB68525.1| flagellar hook capping protein [Escherichia coli TA007]
          Length = 231

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     +I     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTILAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|260767922|ref|ZP_05876856.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
 gi|260615952|gb|EEX41137.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
 gi|315179625|gb|ADT86539.1| flagellar basal body rod modification protein D [Vibrio furnissii
           NCTC 11218]
          Length = 226

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T  N          +  T  Q+ F+ L++ QI++QDP  P+  +E V QLA FSQ++   
Sbjct: 18  TTTNTGISSNGLDANDSTSLQNEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSME 77

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
            M+S +Q    LL +  +   +  +G+ +  +     
Sbjct: 78  NMSSLMQNSMVLLDNMQVLSTAGLVGQTVYVSGNEFE 114


>gi|325109019|ref|YP_004270087.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305]
 gi|324969287|gb|ADY60065.1| flagellar hook capping protein [Planctomyces brasiliensis DSM 5305]
          Length = 160

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +    P Q           L  +AFLKL+I Q+++QDPTEP    E + Q++    ++ S
Sbjct: 9   SPTGQPVQIVDGNDTGFNALDPEAFLKLMIVQLQNQDPTEPTSNEELLNQISTMRSLQSS 68

Query: 64  VQMNSTLQELLKSNN-------LAQASSYIGKNITN-------------ADGSISGVVNA 103
           +++   +  L  S          + A+  IG ++T                  + G+V  
Sbjct: 69  IELEDMIASLANSQTSSASANFASSAAGLIGHSVTGTIPESTDEEGETIPAEEVEGIVER 128

Query: 104 IQVSSTGLTAITVDNTEIPITTGIRIS 130
             +   G   +T+ + E+P+     ++
Sbjct: 129 A-ILRDGKAYVTIGDKELPVENIASVT 154


>gi|167644974|ref|YP_001682637.1| flagellar hook capping protein [Caulobacter sp. K31]
 gi|167347404|gb|ABZ70139.1| flagellar hook capping protein [Caulobacter sp. K31]
          Length = 232

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M +    N    + + S++     +  FLKLL TQ+K+QDP  P   S+  +Q+   + +
Sbjct: 1  MAVTATSNTVTDKINNSRTSLASNEQTFLKLLTTQLKNQDPLSPTDTSQMTSQITQMTGV 60

Query: 61 EQSVQMNSTLQELLKSNN---LAQASSYIGKNITNAD 94
          EQ +  N  L  L+  +    +++  + +GK +T   
Sbjct: 61 EQQLVTNELLTALVGMSTGGGISEGVNLMGKQVTAET 97


>gi|291558203|emb|CBL35320.1| Flagellar hook capping protein [Eubacterium siraeum V10Sc8a]
          Length = 224

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +     +  F  S    T+  D F  LL+ ++ +QDP EP   +E V+Q+A F+ ++ 
Sbjct: 10  VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117
                    + LK +    A+  +GK +T     +    +SGV   + + S     + VD
Sbjct: 70  QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVSI-SGSDVKVVVD 121

Query: 118 NTEIPITTGIRISN 131
             +  ++    IS+
Sbjct: 122 GKQYDLSAVKAISD 135


>gi|91224200|ref|ZP_01259463.1| flagellar basal-body rod modification protein D [Vibrio
           alginolyticus 12G01]
 gi|91191111|gb|EAS77377.1| flagellar basal-body rod modification protein D [Vibrio
           alginolyticus 12G01]
          Length = 227

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +NT+   +       K   +    ++ F+ L++ QI++QDP  P+  +E V QLA FSQ+
Sbjct: 15  VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90
           + +  M+ T+Q+   LL +  +   +  +G+ +
Sbjct: 75  QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107


>gi|167626154|ref|YP_001676448.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
 gi|167356176|gb|ABZ78789.1| flagellar hook capping protein [Shewanella halifaxensis HAW-EB4]
          Length = 220

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---L 73
             +     ++ F+ L+I QI++QDPT P+  +E V+QLA FSQ+E   QM +       +
Sbjct: 21  PGNDSASIKNEFMTLMIAQIQNQDPTNPIDGTEYVSQLAQFSQVESLEQMRANQSTQMVI 80

Query: 74  LKSNNLAQASSYIGKNITNADGSIS 98
           +++  + Q++  +GK+        +
Sbjct: 81  MENLGIVQSAQLVGKDAMVPASEFT 105


>gi|74311637|ref|YP_310056.1| flagellar basal body rod modification protein [Shigella sonnei
           Ss046]
 gi|73855114|gb|AAZ87821.1| flagellar protein for initiation of hook assembly [Shigella sonnei
           Ss046]
          Length = 231

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|30062612|ref|NP_836783.1| flagellar basal body rod modification protein [Shigella flexneri 2a
           str. 2457T]
 gi|30040858|gb|AAP16589.1| flagellar hook formation protein FlgD [Shigella flexneri 2a str.
           2457T]
 gi|313650474|gb|EFS14881.1| basal-body rod modification protein flgD [Shigella flexneri 2a str.
           2457T]
 gi|332758234|gb|EGJ88557.1| basal-body rod modification protein flgD [Shigella flexneri
           4343-70]
 gi|332761420|gb|EGJ91704.1| basal-body rod modification protein flgD [Shigella flexneri K-671]
 gi|332767682|gb|EGJ97875.1| flagellar hook capping family protein [Shigella flexneri 2930-71]
 gi|333005536|gb|EGK25054.1| basal-body rod modification protein flgD [Shigella flexneri K-218]
 gi|333019309|gb|EGK38592.1| basal-body rod modification protein flgD [Shigella flexneri K-304]
          Length = 231

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|323967016|gb|EGB62442.1| flagellar hook capping protein [Escherichia coli M863]
 gi|323976552|gb|EGB71640.1| flagellar hook capping protein [Escherichia coli TW10509]
 gi|327253474|gb|EGE65112.1| basal-body rod modification protein flgD [Escherichia coli STEC_7v]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|16129038|ref|NP_415593.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107921|ref|AP_001701.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|110805092|ref|YP_688612.1| flagellar basal body rod modification protein [Shigella flexneri 5
           str. 8401]
 gi|170080726|ref|YP_001730046.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191168471|ref|ZP_03030259.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
 gi|209918329|ref|YP_002292413.1| flagellar basal body rod modification protein [Escherichia coli
           SE11]
 gi|218553654|ref|YP_002386567.1| flagellar basal body rod modification protein [Escherichia coli
           IAI1]
 gi|218694609|ref|YP_002402276.1| flagellar basal body rod modification protein [Escherichia coli
           55989]
 gi|238900329|ref|YP_002926125.1| flagellar hook assembly protein [Escherichia coli BW2952]
 gi|256018668|ref|ZP_05432533.1| flagellar basal body rod modification protein [Shigella sp. D9]
 gi|256023227|ref|ZP_05437092.1| flagellar basal body rod modification protein [Escherichia sp.
           4_1_40B]
 gi|260854558|ref|YP_003228449.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
           11368]
 gi|293433365|ref|ZP_06661793.1| basal-body rod modification protein flgD [Escherichia coli B088]
 gi|300816777|ref|ZP_07096997.1| flagellar hook capping protein [Escherichia coli MS 107-1]
 gi|300821144|ref|ZP_07101293.1| flagellar hook capping protein [Escherichia coli MS 119-7]
 gi|300922601|ref|ZP_07138701.1| flagellar hook capping protein [Escherichia coli MS 182-1]
 gi|300950170|ref|ZP_07164115.1| flagellar hook capping protein [Escherichia coli MS 116-1]
 gi|300954385|ref|ZP_07166839.1| flagellar hook capping protein [Escherichia coli MS 175-1]
 gi|301029710|ref|ZP_07192764.1| flagellar hook capping protein [Escherichia coli MS 196-1]
 gi|301328555|ref|ZP_07221616.1| flagellar hook capping protein [Escherichia coli MS 78-1]
 gi|301644987|ref|ZP_07244953.1| flagellar hook capping protein [Escherichia coli MS 146-1]
 gi|309798069|ref|ZP_07692444.1| flagellar hook capping protein [Escherichia coli MS 145-7]
 gi|331652128|ref|ZP_08353147.1| basal-body rod modification protein FlgD [Escherichia coli M718]
 gi|331667475|ref|ZP_08368339.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
 gi|331676866|ref|ZP_08377562.1| basal-body rod modification protein FlgD [Escherichia coli H591]
 gi|332279737|ref|ZP_08392150.1| flagellar hook protein FlgE [Shigella sp. D9]
 gi|2494526|sp|P75936|FLGD_ECOLI RecName: Full=Basal-body rod modification protein flgD
 gi|1787315|gb|AAC74159.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4062652|dbj|BAA35883.1| flagellar hook assembly protein [Escherichia coli str. K12 substr.
           W3110]
 gi|110614640|gb|ABF03307.1| basal-body rod modification protein FlgD [Shigella flexneri 5 str.
           8401]
 gi|169888561|gb|ACB02268.1| flagellar hook assembly protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|190901490|gb|EDV61251.1| flagellar hook capping protein FlgD [Escherichia coli B7A]
 gi|209911588|dbj|BAG76662.1| flagellar hook formation protein FlgD [Escherichia coli SE11]
 gi|218351341|emb|CAU97047.1| flagellar hook assembly protein [Escherichia coli 55989]
 gi|218360422|emb|CAQ97974.1| flagellar hook assembly protein [Escherichia coli IAI1]
 gi|238861107|gb|ACR63105.1| flagellar hook assembly protein [Escherichia coli BW2952]
 gi|257753207|dbj|BAI24709.1| flagellar hook assembly protein FlgD [Escherichia coli O26:H11 str.
           11368]
 gi|260449785|gb|ACX40207.1| flagellar hook capping protein [Escherichia coli DH1]
 gi|291324184|gb|EFE63606.1| basal-body rod modification protein flgD [Escherichia coli B088]
 gi|299877398|gb|EFI85609.1| flagellar hook capping protein [Escherichia coli MS 196-1]
 gi|300318621|gb|EFJ68405.1| flagellar hook capping protein [Escherichia coli MS 175-1]
 gi|300421078|gb|EFK04389.1| flagellar hook capping protein [Escherichia coli MS 182-1]
 gi|300450517|gb|EFK14137.1| flagellar hook capping protein [Escherichia coli MS 116-1]
 gi|300526443|gb|EFK47512.1| flagellar hook capping protein [Escherichia coli MS 119-7]
 gi|300530551|gb|EFK51613.1| flagellar hook capping protein [Escherichia coli MS 107-1]
 gi|300844947|gb|EFK72707.1| flagellar hook capping protein [Escherichia coli MS 78-1]
 gi|301076716|gb|EFK91522.1| flagellar hook capping protein [Escherichia coli MS 146-1]
 gi|308118352|gb|EFO55614.1| flagellar hook capping protein [Escherichia coli MS 145-7]
 gi|309701347|emb|CBJ00648.1| basal-body rod modification protein FlgD [Escherichia coli ETEC
           H10407]
 gi|315135707|dbj|BAJ42866.1| flagellar basal body rod modification protein [Escherichia coli
           DH1]
 gi|315618245|gb|EFU98835.1| basal-body rod modification protein flgD [Escherichia coli 3431]
 gi|323156882|gb|EFZ43016.1| basal-body rod modification protein flgD [Escherichia coli EPECa14]
 gi|323165583|gb|EFZ51370.1| basal-body rod modification protein flgD [Shigella sonnei 53G]
 gi|323185802|gb|EFZ71163.1| basal-body rod modification protein flgD [Escherichia coli 1357]
 gi|323937815|gb|EGB34079.1| flagellar hook capping protein [Escherichia coli E1520]
 gi|323942544|gb|EGB38711.1| flagellar hook capping protein [Escherichia coli E482]
 gi|324017421|gb|EGB86640.1| flagellar hook capping protein [Escherichia coli MS 117-3]
 gi|324117354|gb|EGC11261.1| flagellar hook capping protein [Escherichia coli E1167]
 gi|331050406|gb|EGI22464.1| basal-body rod modification protein FlgD [Escherichia coli M718]
 gi|331065060|gb|EGI36955.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
 gi|331075555|gb|EGI46853.1| basal-body rod modification protein FlgD [Escherichia coli H591]
 gi|332102089|gb|EGJ05435.1| flagellar hook protein FlgE [Shigella sp. D9]
 gi|332342621|gb|AEE55955.1| flagellar basal-body rod modification protein FlgD [Escherichia
           coli UMNK88]
 gi|333008277|gb|EGK27751.1| basal-body rod modification protein flgD [Shigella flexneri K-272]
 gi|333019767|gb|EGK39039.1| basal-body rod modification protein flgD [Shigella flexneri K-227]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|109899403|ref|YP_662658.1| flagellar basal body rod modification protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701684|gb|ABG41604.1| flagellar hook capping protein [Pseudoalteromonas atlantica T6c]
          Length = 228

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
             +S + L Q+ F  LL  Q+ +QDP++P+   + VAQ+  F+  +   Q+N   +    
Sbjct: 23  ADESNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82

Query: 74  -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            + SN   QASS IG+ +      + G V  +     G++ + ++++   + T I I N
Sbjct: 83  SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDST-TLNTKITIEN 135


>gi|296102909|ref|YP_003613055.1| flagellar basal-body rod modification protein FlgD [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057368|gb|ADF62106.1| flagellar basal-body rod modification protein FlgD [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 236

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           ++   + T        +   L Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +  
Sbjct: 15  VSGAKSSTGSSSLTGSNASDL-QSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSG 73

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
             ++N+TL  +   + ++   QA+S IG  +     +I
Sbjct: 74  IEKLNTTLGSVSGQIDNSQSLQAASLIGHGVMIPGTTI 111


>gi|187732739|ref|YP_001880753.1| flagellar basal body rod modification protein [Shigella boydii CDC
           3083-94]
 gi|187429731|gb|ACD09005.1| flagellar hook capping protein FlgD [Shigella boydii CDC 3083-94]
 gi|320173528|gb|EFW48724.1| Flagellar basal-body rod modification protein FlgD [Shigella
           dysenteriae CDC 74-1112]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|15830707|ref|NP_309480.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|91210227|ref|YP_540213.1| flagellar basal body rod modification protein [Escherichia coli
           UTI89]
 gi|110641251|ref|YP_668981.1| flagellar basal body rod modification protein [Escherichia coli
           536]
 gi|117623261|ref|YP_852174.1| flagellar basal body rod modification protein [Escherichia coli
           APEC O1]
 gi|157160602|ref|YP_001457920.1| flagellar basal body rod modification protein [Escherichia coli HS]
 gi|168747149|ref|ZP_02772171.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758632|ref|ZP_02783639.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764487|ref|ZP_02789494.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767734|ref|ZP_02792741.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773920|ref|ZP_02798927.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783605|ref|ZP_02808612.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|168802020|ref|ZP_02827027.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC508]
 gi|170020529|ref|YP_001725483.1| flagellar basal body rod modification protein [Escherichia coli
           ATCC 8739]
 gi|191172470|ref|ZP_03034011.1| flagellar hook capping protein FlgD [Escherichia coli F11]
 gi|195935465|ref|ZP_03080847.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809154|ref|ZP_03251491.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815597|ref|ZP_03256776.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822404|ref|ZP_03262723.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396598|ref|YP_002269921.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|215486284|ref|YP_002328715.1| flagellar basal body rod modification protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217328509|ref|ZP_03444591.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218557957|ref|YP_002390870.1| flagellar basal body rod modification protein [Escherichia coli
           S88]
 gi|237706939|ref|ZP_04537420.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
 gi|254792457|ref|YP_003077294.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|291282095|ref|YP_003498913.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
 gi|300902466|ref|ZP_07120448.1| flagellar hook capping protein [Escherichia coli MS 84-1]
 gi|300982622|ref|ZP_07176206.1| flagellar hook capping protein [Escherichia coli MS 200-1]
 gi|301023262|ref|ZP_07187059.1| flagellar hook capping protein [Escherichia coli MS 69-1]
 gi|301304986|ref|ZP_07211088.1| flagellar hook capping protein [Escherichia coli MS 124-1]
 gi|307310147|ref|ZP_07589797.1| flagellar hook capping protein [Escherichia coli W]
 gi|312971212|ref|ZP_07785390.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
 gi|331657137|ref|ZP_08358099.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
 gi|331662481|ref|ZP_08363404.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
 gi|13360917|dbj|BAB34876.1| flagellar biosynthesis FlgD protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|91071801|gb|ABE06682.1| flagellar hook formation protein FlgD [Escherichia coli UTI89]
 gi|110342843|gb|ABG69080.1| basal-body rod modification protein FlgD [Escherichia coli 536]
 gi|115512385|gb|ABJ00460.1| flagellar hook formation protein FlgD [Escherichia coli APEC O1]
 gi|157066282|gb|ABV05537.1| flagellar hook capping protein FlgD [Escherichia coli HS]
 gi|169755457|gb|ACA78156.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
 gi|187770545|gb|EDU34389.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018077|gb|EDU56199.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999082|gb|EDU68068.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354575|gb|EDU72994.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363218|gb|EDU81637.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365529|gb|EDU83945.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189375919|gb|EDU94335.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC508]
 gi|190907354|gb|EDV66952.1| flagellar hook capping protein FlgD [Escherichia coli F11]
 gi|208728955|gb|EDZ78556.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732245|gb|EDZ80933.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737889|gb|EDZ85572.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157998|gb|ACI35431.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209773388|gb|ACI85006.1| flagellar biosynthesis FlgD protein [Escherichia coli]
 gi|209773390|gb|ACI85007.1| flagellar biosynthesis FlgD protein [Escherichia coli]
 gi|209773392|gb|ACI85008.1| flagellar biosynthesis FlgD protein [Escherichia coli]
 gi|209773394|gb|ACI85009.1| flagellar biosynthesis FlgD protein [Escherichia coli]
 gi|209773396|gb|ACI85010.1| flagellar biosynthesis FlgD protein [Escherichia coli]
 gi|215264356|emb|CAS08713.1| flagellar hook assembly protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217318936|gb|EEC27362.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218364726|emb|CAR02416.1| flagellar hook assembly protein [Escherichia coli S88]
 gi|226898149|gb|EEH84408.1| flagellar hook protein FlgE [Escherichia sp. 3_2_53FAA]
 gi|254591857|gb|ACT71218.1| flagellar hook assembly protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|281178184|dbj|BAI54514.1| flagellar hook formation protein FlgD [Escherichia coli SE15]
 gi|284920898|emb|CBG33961.1| basal-body rod modification protein FlgD [Escherichia coli 042]
 gi|290761968|gb|ADD55929.1| Flagellar hook protein FlgE [Escherichia coli O55:H7 str. CB9615]
 gi|294491980|gb|ADE90736.1| Flagellar hook capping protein [Escherichia coli IHE3034]
 gi|300307087|gb|EFJ61607.1| flagellar hook capping protein [Escherichia coli MS 200-1]
 gi|300397107|gb|EFJ80645.1| flagellar hook capping protein [Escherichia coli MS 69-1]
 gi|300405498|gb|EFJ89036.1| flagellar hook capping protein [Escherichia coli MS 84-1]
 gi|300839704|gb|EFK67464.1| flagellar hook capping protein [Escherichia coli MS 124-1]
 gi|306909865|gb|EFN40359.1| flagellar hook capping protein [Escherichia coli W]
 gi|307627455|gb|ADN71759.1| flagellar basal body rod modification protein [Escherichia coli
           UM146]
 gi|310336414|gb|EFQ01600.1| basal-body rod modification protein flgD [Escherichia coli 1827-70]
 gi|315060353|gb|ADT74680.1| flagellar hook assembly protein [Escherichia coli W]
 gi|315253876|gb|EFU33844.1| flagellar hook capping protein [Escherichia coli MS 85-1]
 gi|315287370|gb|EFU46781.1| flagellar hook capping protein [Escherichia coli MS 110-3]
 gi|315296706|gb|EFU56001.1| flagellar hook capping protein [Escherichia coli MS 16-3]
 gi|320179225|gb|EFW54183.1| Flagellar basal-body rod modification protein FlgD [Shigella boydii
           ATCC 9905]
 gi|320189758|gb|EFW64414.1| Flagellar basal-body rod modification protein FlgD [Escherichia
           coli O157:H7 str. EC1212]
 gi|320196443|gb|EFW71066.1| Flagellar basal-body rod modification protein FlgD [Escherichia
           coli WV_060327]
 gi|320200971|gb|EFW75555.1| Flagellar basal-body rod modification protein FlgD [Escherichia
           coli EC4100B]
 gi|320637526|gb|EFX07326.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. G5101]
 gi|320643087|gb|EFX12288.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320648545|gb|EFX17200.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H- str. H 2687]
 gi|320653859|gb|EFX21933.1| flagellar basal body rod modification protein [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659339|gb|EFX26908.1| flagellar basal body rod modification protein [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320664474|gb|EFX31625.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323174796|gb|EFZ60411.1| basal-body rod modification protein flgD [Escherichia coli LT-68]
 gi|323379086|gb|ADX51354.1| flagellar hook capping protein [Escherichia coli KO11]
 gi|323953239|gb|EGB49105.1| flagellar hook capping protein [Escherichia coli H252]
 gi|323957899|gb|EGB53611.1| flagellar hook capping protein [Escherichia coli H263]
 gi|324007915|gb|EGB77134.1| flagellar hook capping protein [Escherichia coli MS 57-2]
 gi|324013349|gb|EGB82568.1| flagellar hook capping protein [Escherichia coli MS 60-1]
 gi|326339297|gb|EGD63111.1| Flagellar basal-body rod modification protein FlgD [Escherichia
           coli O157:H7 str. 1125]
 gi|326344742|gb|EGD68490.1| Flagellar basal-body rod modification protein FlgD [Escherichia
           coli O157:H7 str. 1044]
 gi|331055385|gb|EGI27394.1| basal-body rod modification protein FlgD [Escherichia coli TA206]
 gi|331060903|gb|EGI32867.1| basal-body rod modification protein FlgD [Escherichia coli TA143]
 gi|332088751|gb|EGI93863.1| basal-body rod modification protein flgD [Shigella boydii 5216-82]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|291532059|emb|CBK97644.1| Flagellar hook capping protein [Eubacterium siraeum 70/3]
          Length = 224

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +     +  F  S    T+  D F  LL+ ++ +QDP EP   +E V+Q+A F+ ++ 
Sbjct: 10  VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117
                    + LK +    A+  +GK +T     +    +SGV   + + S     + VD
Sbjct: 70  QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNI-SGSDVKVVVD 121

Query: 118 NTEIPITTGIRISN 131
             +  ++    IS+
Sbjct: 122 GKQYDLSAVKAISD 135


>gi|167750724|ref|ZP_02422851.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
 gi|167656403|gb|EDS00533.1| hypothetical protein EUBSIR_01702 [Eubacterium siraeum DSM 15702]
          Length = 224

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + +     +  F  S    T+  D F  LL+ ++ +QDP EP   +E V+Q+A F+ ++ 
Sbjct: 10  VQSNHEKYKDLFKNSGKNDTISTDTFFSLLMAEMSNQDPLEPTSNTEFVSQMAQFTALQA 69

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNIT-----NADGSISGVVNAIQVSSTGLTAITVD 117
                    + LK +    A+  +GK +T     +    +SGV   + + S     + VD
Sbjct: 70  QQ-------DNLKYSMSNYAAGLVGKTLTMNAQSDDGTLLSGVCTGVNI-SGSDVKVVVD 121

Query: 118 NTEIPITTGIRISN 131
             +  ++    IS+
Sbjct: 122 GKQYDLSAVKAISD 135


>gi|281600494|gb|ADA73478.1| Flagellar hook protein FlgE [Shigella flexneri 2002017]
          Length = 229

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +     ++
Sbjct: 92  ASNLIGHGVMIPGTTV 107


>gi|127512278|ref|YP_001093475.1| flagellar basal body rod modification protein [Shewanella loihica
           PV-4]
 gi|126637573|gb|ABO23216.1| flagellar hook capping protein [Shewanella loihica PV-4]
          Length = 260

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
            +   ++        + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   +
Sbjct: 44  SMRLQEESSIPEAKSQELTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITK 103

Query: 66  MNS---TLQELLKSNNLAQASSYIGKNITNADGS 96
           +N     L  ++ S+   QAS  +G+ +     +
Sbjct: 104 LNEEIVNLNTVMTSSQALQASGLVGQKVLIPSDT 137


>gi|332759649|gb|EGJ89954.1| basal-body rod modification protein flgD [Shigella flexneri
           2747-71]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|331646333|ref|ZP_08347436.1| basal-body rod modification protein FlgD [Escherichia coli M605]
 gi|330910889|gb|EGH39399.1| flagellar basal-body rod modification protein FlgD [Escherichia
           coli AA86]
 gi|331045085|gb|EGI17212.1| basal-body rod modification protein FlgD [Escherichia coli M605]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|218704483|ref|YP_002412002.1| flagellar basal body rod modification protein [Escherichia coli
           UMN026]
 gi|293404359|ref|ZP_06648353.1| basal-body rod modification protein flgD [Escherichia coli
           FVEC1412]
 gi|298380139|ref|ZP_06989744.1| basal-body rod modification protein flgD [Escherichia coli
           FVEC1302]
 gi|300899594|ref|ZP_07117833.1| flagellar hook capping protein [Escherichia coli MS 198-1]
 gi|331672595|ref|ZP_08373384.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
 gi|331682577|ref|ZP_08383196.1| basal-body rod modification protein FlgD [Escherichia coli H299]
 gi|218431580|emb|CAR12459.1| flagellar hook assembly protein [Escherichia coli UMN026]
 gi|291428945|gb|EFF01970.1| basal-body rod modification protein flgD [Escherichia coli
           FVEC1412]
 gi|298279837|gb|EFI21345.1| basal-body rod modification protein flgD [Escherichia coli
           FVEC1302]
 gi|300356865|gb|EFJ72735.1| flagellar hook capping protein [Escherichia coli MS 198-1]
 gi|331070238|gb|EGI41604.1| basal-body rod modification protein FlgD [Escherichia coli TA280]
 gi|331080208|gb|EGI51387.1| basal-body rod modification protein FlgD [Escherichia coli H299]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|168790010|ref|ZP_02815017.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC869]
 gi|261227020|ref|ZP_05941301.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256254|ref|ZP_05948787.1| flagellar basal body rod modification protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370461|gb|EDU88877.1| flagellar hook capping protein FlgD [Escherichia coli O157:H7 str.
           EC869]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|82777310|ref|YP_403659.1| flagellar basal body rod modification protein [Shigella dysenteriae
           Sd197]
 gi|309788142|ref|ZP_07682748.1| basal-body rod modification protein flgD [Shigella dysenteriae
           1617]
 gi|81241458|gb|ABB62168.1| initiation of hook assembly [Shigella dysenteriae Sd197]
 gi|308923994|gb|EFP69495.1| basal-body rod modification protein flgD [Shigella dysenteriae
           1617]
          Length = 231

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVIIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|269965643|ref|ZP_06179756.1| Flagellar basal-body rod modification protein flgD [Vibrio
           alginolyticus 40B]
 gi|269829711|gb|EEZ83947.1| Flagellar basal-body rod modification protein flgD [Vibrio
           alginolyticus 40B]
          Length = 227

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 3   INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +NT+   +       K   +    ++ F+ L++ QI++QDP  P+  +E V QLA FSQ+
Sbjct: 15  VNTKAKDSNGISPNPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQV 74

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNI 90
           + +  M+ T+Q+   LL +  +   +  +G+ +
Sbjct: 75  QSTENMSKTMQQSMVLLDNMQVLSTAGLVGQTV 107


>gi|24051371|gb|AAN42702.1| flagellar hook protein FlgE [Shigella flexneri 2a str. 301]
          Length = 642

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|170682037|ref|YP_001744105.1| flagellar basal body rod modification protein [Escherichia coli
           SMS-3-5]
 gi|170519755|gb|ACB17933.1| flagellar hook capping protein FlgD [Escherichia coli SMS-3-5]
          Length = 231

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSDEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|157165774|ref|YP_001466012.1| flagellar basal body rod modification protein [Campylobacter
           concisus 13826]
 gi|112801160|gb|EAT98504.1| flagellar hook assembly protein [Campylobacter concisus 13826]
          Length = 235

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             + + +     L +DAF+KLL+T+++HQDPT PM   + + Q +  + +E     N  +
Sbjct: 27  AAKGTGTNPNSQLDKDAFMKLLLTELQHQDPTSPMDTEKMLTQTSQLASVEMQENTNKAM 86

Query: 71  QEL---LKSNNLAQASSYIGKNITNADGSIS 98
           +EL   LKSN  A A S +GK ++    +++
Sbjct: 87  KELVNQLKSNANAYAISALGKMVSTGSNAVT 117


>gi|124268255|ref|YP_001022259.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
 gi|124261030|gb|ABM96024.1| flagellar hook capping protein [Methylibium petroleiphilum PM1]
          Length = 217

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+  +        + +K   G + FLKLL+TQ+K+QDP  PM  ++  +Q+A  + +   
Sbjct: 8   NSSSSVYDALNGSTTTKTDDGSERFLKLLVTQMKNQDPMNPMDNAQVTSQIAQINTVTGI 67

Query: 64  VQMNSTLQ---ELLKSNNLAQASSYIGKNITNADGSIS 98
             +N T++     + S+ + Q +  +G  +  A   + 
Sbjct: 68  STLNQTVKSLSSQMLSSQVLQGAGLVGHTVLMAGSKLH 105


>gi|188492655|ref|ZP_02999925.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
 gi|188487854|gb|EDU62957.1| flagellar hook capping protein FlgD [Escherichia coli 53638]
          Length = 231

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  + +   ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMSPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|218700422|ref|YP_002408051.1| flagellar basal body rod modification protein [Escherichia coli
           IAI39]
 gi|300938640|ref|ZP_07153369.1| flagellar hook capping protein [Escherichia coli MS 21-1]
 gi|218370408|emb|CAR18215.1| flagellar hook assembly protein [Escherichia coli IAI39]
 gi|300456425|gb|EFK19918.1| flagellar hook capping protein [Escherichia coli MS 21-1]
          Length = 231

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSDEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|254227982|ref|ZP_04921412.1| Flagellar hook capping protein [Vibrio sp. Ex25]
 gi|262396036|ref|YP_003287889.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           Ex25]
 gi|151939478|gb|EDN58306.1| Flagellar hook capping protein [Vibrio sp. Ex25]
 gi|262339630|gb|ACY53424.1| flagellar basal-body rod modification protein FlgD [Vibrio sp.
           Ex25]
          Length = 227

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE- 72
             K  +  +  ++ F+ L++ QI++QDP  P+  +E V QLA FSQ++ +  M+ T+Q+ 
Sbjct: 28  NPKDMNSASSLENEFISLMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSRTMQQS 87

Query: 73  --LLKSNNLAQASSYIGKNITNADGSIS 98
             LL +  +   +  +G+ +        
Sbjct: 88  MILLDNMQVLSTAGLVGQTVYVNSKEFE 115


>gi|194432371|ref|ZP_03064658.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
 gi|194419258|gb|EDX35340.1| flagellar hook capping protein FlgD [Shigella dysenteriae 1012]
 gi|332092821|gb|EGI97889.1| basal-body rod modification protein flgD [Shigella dysenteriae
           155-74]
          Length = 231

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMLPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|289433974|ref|YP_003463846.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170218|emb|CBH26758.1| flagellar hook assembly protein FlgD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 140

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +           S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +   
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPLTYVTEIN 140


>gi|261339375|ref|ZP_05967233.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318176|gb|EFC57114.1| basal-body rod modification protein FlgD [Enterobacter cancerogenus
           ATCC 35316]
          Length = 236

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---L 74
            S  +  Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +    ++N+TL  +   +
Sbjct: 29  GSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQI 88

Query: 75  KSNNLAQASSYIGKNITNADGSI 97
            S+   QA++ IG  +     +I
Sbjct: 89  DSSQSLQAANLIGHGVMIPGTTI 111


>gi|218689028|ref|YP_002397240.1| flagellar basal body rod modification protein [Escherichia coli
           ED1a]
 gi|306814076|ref|ZP_07448249.1| flagellar basal body rod modification protein [Escherichia coli
           NC101]
 gi|218426592|emb|CAR07420.1| flagellar hook assembly protein [Escherichia coli ED1a]
 gi|305852713|gb|EFM53161.1| flagellar basal body rod modification protein [Escherichia coli
           NC101]
          Length = 231

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|146311245|ref|YP_001176319.1| flagellar basal body rod modification protein [Enterobacter sp.
           638]
 gi|145318121|gb|ABP60268.1| flagellar hook capping protein [Enterobacter sp. 638]
          Length = 236

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
           + +  +  Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +    ++N+TL  +   
Sbjct: 28  TGNSASDLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQ 87

Query: 74  LKSNNLAQASSYIGKNITNADGSI 97
           L  +   QAS+ IG  +     +I
Sbjct: 88  LNDSQSLQASNLIGHGVMIPGTTI 111


>gi|77918789|ref|YP_356604.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM
           2380]
 gi|77544872|gb|ABA88434.1| flagellar hook initiation protein FlgD [Pelobacter carbinolicus DSM
           2380]
          Length = 218

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               +            LG+D FL LL+TQ+++QDP  P   +E  +QLA +S +EQ   
Sbjct: 8   NQTASSSMTGSLTGSSNLGKDDFLLLLVTQLQNQDPLNPQDPTEFTSQLAQYSSLEQLFT 67

Query: 66  MNSTLQELLKSNNL---AQASSYIGKNITNADGSISGVVNAIQVSST 109
           +N  LQ+L  +N       A   +G+++     S       + +   
Sbjct: 68  VNDQLQQLETTNGNVVQMTALGLMGQDVVVQSDSFKLGGTPVTLGYD 114


>gi|293409441|ref|ZP_06653017.1| basal-body rod modification protein flgD [Escherichia coli B354]
 gi|291469909|gb|EFF12393.1| basal-body rod modification protein flgD [Escherichia coli B354]
          Length = 231

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|114799290|ref|YP_758991.1| putative basal-body rod modification protein FlgD [Hyphomonas
           neptunium ATCC 15444]
 gi|114739464|gb|ABI77589.1| putative basal-body rod modification protein FlgD [Hyphomonas
           neptunium ATCC 15444]
          Length = 216

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNLA 80
             ++F+KLL  Q+++QDP  PM +++ V QLA FS +EQ V  N+ L     ++   N  
Sbjct: 26  EYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGDLNGL 85

Query: 81  QASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
            AS ++G+++T A   +    +    S       T     +  + G  +
Sbjct: 86  MASQWLGEDVTFASSFMPYTGSEATFSYEAPEGATKSTLTVKDSEGNAV 134


>gi|26247215|ref|NP_753255.1| flagellar basal body rod modification protein [Escherichia coli
           CFT073]
 gi|227886567|ref|ZP_04004372.1| flagellar basal body rod modification protein [Escherichia coli
           83972]
 gi|300974379|ref|ZP_07172591.1| flagellar hook capping protein [Escherichia coli MS 45-1]
 gi|301051141|ref|ZP_07197971.1| flagellar hook capping protein [Escherichia coli MS 185-1]
 gi|26107616|gb|AAN79815.1|AE016759_89 Basal-body rod modification protein flgD [Escherichia coli CFT073]
 gi|227836771|gb|EEJ47237.1| flagellar basal body rod modification protein [Escherichia coli
           83972]
 gi|300297162|gb|EFJ53547.1| flagellar hook capping protein [Escherichia coli MS 185-1]
 gi|300410622|gb|EFJ94160.1| flagellar hook capping protein [Escherichia coli MS 45-1]
 gi|307553077|gb|ADN45852.1| flagellar hook capping protein FlgD [Escherichia coli ABU 83972]
 gi|315291069|gb|EFU50432.1| flagellar hook capping protein [Escherichia coli MS 153-1]
          Length = 231

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|117919771|ref|YP_868963.1| flagellar basal body rod modification protein [Shewanella sp.
           ANA-3]
 gi|117612103|gb|ABK47557.1| basal-body rod modification protein FlgD [Shewanella sp. ANA-3]
          Length = 259

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
                      + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 47  PTSSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQ 106

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +     + +G ++A      G+ + +     I + 
Sbjct: 107 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYISAESPGLNGVISTSEKIPVINVR 162


>gi|222032828|emb|CAP75567.1| Basal-body rod modification protein flgD [Escherichia coli LF82]
 gi|312945637|gb|ADR26464.1| flagellar basal body rod modification protein [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 231

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|330875982|gb|EGH10131.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330967089|gb|EGH67349.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 229

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 3/89 (3%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
             + + S  TLG+DAFL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E    + ST+  
Sbjct: 23  TPTATNSTGTLGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLESMQNLTSTVDT 82

Query: 73  LLK---SNNLAQASSYIGKNITNADGSIS 98
           +     S+   QASS +G+++     S +
Sbjct: 83  IATSYKSSQALQASSLVGRSVIIDSSSTT 111


>gi|315301939|ref|ZP_07872941.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
 gi|313629692|gb|EFR97823.1| flagellar hook capping protein [Listeria ivanovii FSL F6-596]
 gi|313634373|gb|EFS00968.1| flagellar hook capping protein [Listeria seeligeri FSL N1-067]
 gi|313639058|gb|EFS04045.1| flagellar hook capping protein [Listeria seeligeri FSL S4-171]
          Length = 140

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +           S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGATQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-ITVD 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +   
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKLKEQ 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPLTYVTEIN 140


>gi|283955453|ref|ZP_06372951.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793080|gb|EFC31851.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 286

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
              TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N T+Q+++++  
Sbjct: 39  PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNITMQKMVETME 98

Query: 79  LAQAS----------SYIGKNITNADGSI 97
               S            IGK  T  +  +
Sbjct: 99  KLSNSFSTSMSTAAVGAIGKMATVNENKV 127


>gi|84683989|ref|ZP_01011891.1| Possible FlgD protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84667742|gb|EAQ14210.1| Possible FlgD protein [Rhodobacterales bacterium HTCC2654]
          Length = 227

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 15 SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL 74
           KSKS  +   + FLK+L  Q+++QDP  P+++S+   QLA FS +EQ VQ N  L+ L 
Sbjct: 25 PKSKSAISSDFETFLKMLTVQMENQDPLNPIESSDYAVQLATFSGVEQQVQTNDLLKALQ 84

Query: 75 KSNNLAQASSYIG 87
              +   S   G
Sbjct: 85 TQLGVMSMSDLAG 97


>gi|332533176|ref|ZP_08409045.1| flagellar basal-body rod modification protein FlgD
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037458|gb|EGI73912.1| flagellar basal-body rod modification protein FlgD
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 226

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           QQ  +       L Q+ F  LL  Q+ +QDP+ P    + +AQ+  F+  +    +N+  
Sbjct: 20  QQVATSDNESDALTQEDFFSLLTQQLSYQDPSNPADNDQMIAQMTSFTMAQGITDLNTNF 79

Query: 71  QEL---LKSNNLAQASSYIGKNITNADGSI 97
           + L   + SN+  QAS+ +GK       ++
Sbjct: 80  ESLASSMTSNSALQASTLVGKQALLESNTL 109


>gi|304409979|ref|ZP_07391598.1| flagellar hook capping protein [Shewanella baltica OS183]
 gi|307302308|ref|ZP_07582066.1| flagellar hook capping protein [Shewanella baltica BA175]
 gi|304351388|gb|EFM15787.1| flagellar hook capping protein [Shewanella baltica OS183]
 gi|306914346|gb|EFN44767.1| flagellar hook capping protein [Shewanella baltica BA175]
          Length = 256

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQE 72
                + L QD F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N     L  
Sbjct: 50  PEAKSQQLTQDDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGIGKLNDQIVNLNS 109

Query: 73  LLKSNNLAQASSYIGKNITNADGS 96
           ++ S+   QAS  +G+ +     +
Sbjct: 110 VMTSSQALQASGLVGRKVLIPTDT 133


>gi|193064562|ref|ZP_03045642.1| flagellar hook capping protein FlgD [Escherichia coli E22]
 gi|194428429|ref|ZP_03060969.1| flagellar hook capping protein FlgD [Escherichia coli B171]
 gi|260843315|ref|YP_003221093.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
           12009]
 gi|192927814|gb|EDV82428.1| flagellar hook capping protein FlgD [Escherichia coli E22]
 gi|194413481|gb|EDX29763.1| flagellar hook capping protein FlgD [Escherichia coli B171]
 gi|257758462|dbj|BAI29959.1| flagellar hook assembly protein FlgD [Escherichia coli O103:H2 str.
           12009]
 gi|323163757|gb|EFZ49576.1| basal-body rod modification protein flgD [Escherichia coli E128010]
          Length = 231

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIHGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|302387790|ref|YP_003823612.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
 gi|302198418|gb|ADL05989.1| flagellar hook capping protein [Clostridium saccharolyticum WM1]
          Length = 192

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +      + + S   L  D F KLL  Q+++QD + PM  SE + Q+   + M+   
Sbjct: 8   NNYSSLINSLTDNSSSGGLTTDGFFKLLAAQLQNQDMSSPMDNSEMMTQMTQIAMMQAMN 67

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS-------GVVNAIQVSST--GLTAIT 115
             ++ +++  + N +   +S +GK +  A    +       G V  + + S    +    
Sbjct: 68  NFSTAMEDFSQINTINYGTSMMGKEVMIAAADKTGQIKKINGTVTRVDIFSGIPTIYIND 127

Query: 116 VDNTEIPITTGIRISN 131
            D T   I   + +  
Sbjct: 128 DDKTGYSIANIMSVYE 143


>gi|253998489|ref|YP_003050552.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
 gi|253985168|gb|ACT50025.1| flagellar hook capping protein [Methylovorus sp. SIP3-4]
          Length = 218

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  +       S S S     QD F+ LLITQ+K QDP  PM  ++  +QLA  S +   
Sbjct: 6   NDLLTTMNTRKSGSGSTAADAQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
            ++NST++ +   ++S+   QAS+ IG+ +     S++
Sbjct: 66  DKLNSTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103


>gi|237751427|ref|ZP_04581907.1| flagellar basal body rod modification protein [Helicobacter bilis
          ATCC 43879]
 gi|229372793|gb|EEO23184.1| flagellar basal body rod modification protein [Helicobacter bilis
          ATCC 43879]
          Length = 507

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 47/83 (56%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++   ++    L +DAF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGSTAAREKKKESAQIANGLDKDAFMKLFLEQLKNQDPTSPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T++E+ ++   +Q ++
Sbjct: 67 MQEENKKTMKEVAQAMKASQETN 89


>gi|83950599|ref|ZP_00959332.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
 gi|83838498|gb|EAP77794.1| Possible FlgD protein [Roseovarius nubinhibens ISM]
          Length = 227

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 1  MEINTEVNPTQQEFSKSKSKK-----------TLGQDAFLKLLITQIKHQDPTEPMKASE 49
          M++ T    T Q     ++             +   + FLK+L  Q+++QDP  P++ ++
Sbjct: 1  MDVTTSTTSTGQAAQSGQASTQAESDSSSRAISADFETFLKMLTVQMRNQDPLNPVEGTD 60

Query: 50 QVAQLAVFSQMEQSVQMNSTLQEL 73
             QLA FS +EQ V+ N  L  L
Sbjct: 61 FAVQLATFSTVEQQVRTNDLLGAL 84


>gi|295096226|emb|CBK85316.1| Flagellar hook capping protein [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 236

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              +      S + S  +  Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +    
Sbjct: 16  NSTSSATGSSSLTGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIE 75

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           ++N+TL  +   + ++   QA++ IG  +     +I
Sbjct: 76  KLNTTLGSVSGQIDNSQSLQAANLIGHGVMIPGTTI 111


>gi|323190587|gb|EFZ75859.1| basal-body rod modification protein flgD [Escherichia coli RN587/1]
          Length = 231

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|323947623|gb|EGB43627.1| flagellar hook capping protein [Escherichia coli H120]
          Length = 231

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +     ++
Sbjct: 92  ASNLIGHGVMIPGTTV 107


>gi|311280018|ref|YP_003942249.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
 gi|308749213|gb|ADO48965.1| flagellar hook capping protein [Enterobacter cloacae SCF1]
          Length = 230

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT V  T    S + S     Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +   
Sbjct: 12  NTGVQSTSSSTSLTGSSAADLQSSFLTLLVAQLKNQDPTNPMQNNELTSQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + +    QA++ IG  +     ++
Sbjct: 72  EKLNTTLGSISGQIDNGQSLQATALIGHGVMIPGTTV 108


>gi|32490789|ref|NP_871043.1| hypothetical protein WGLp040 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165995|dbj|BAC24186.1| flgD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 279

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
            + +      D FLK+++ QIK+QDPT P+  +    Q+          ++N ++QE+ +
Sbjct: 74  NNSNNLQSLTDNFLKMILVQIKNQDPTHPIDNNHLTTQMTQMHTALGIEKLNKSIQEIKQ 133

Query: 76  SNNLAQA---SSYIGKNITNADGSI 97
           + N +Q    S++IGK +      I
Sbjct: 134 TMNNSQYINLSNWIGKTVMIEGNPI 158


>gi|332305614|ref|YP_004433465.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172943|gb|AEE22197.1| flagellar hook capping protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 228

 Score = 70.8 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 9/119 (7%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL-- 73
              S + L Q+ F  LL  Q+ +QDP++P+   + VAQ+  F+  +   Q+N   +    
Sbjct: 23  ADDSNQNLSQEDFFSLLTEQLANQDPSKPVDNDQMVAQMTSFTMADGISQLNEKFETFAT 82

Query: 74  -LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            + SN   QASS IG+ +      + G V  +     G++ + +++T   + T I I N
Sbjct: 83  SMTSNQALQASSLIGQQVL-----LQGDVAHMASEGQGVSGVVINDTT-TLNTKITIEN 135


>gi|304397203|ref|ZP_07379082.1| flagellar hook capping protein [Pantoea sp. aB]
 gi|304355352|gb|EFM19720.1| flagellar hook capping protein [Pantoea sp. aB]
          Length = 224

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           +    S + +     Q+ FL +L+TQ+K+QDPT PM  S+   QLA  + +    ++N+T
Sbjct: 17  SSSNTSGTGNNAQDLQNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTT 76

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  +   + ++   Q+S+ IG  +    G I
Sbjct: 77  LGSISGQINTSQSLQSSTLIGHGVMVNGGQI 107


>gi|330445347|ref|ZP_08308999.1| flagellar hook capping family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489538|dbj|GAA03496.1| flagellar hook capping family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
            +   K  L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN     L 
Sbjct: 30  QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVGNDQMIAQMASFATVDGINKMNEQFGSLN 89

Query: 74  --LKSNNLAQASSYIGKNITNADGS 96
             + SN   QASS +G+++   + +
Sbjct: 90  SAMTSNQALQASSLVGQDVLIPNST 114


>gi|302343733|ref|YP_003808262.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
 gi|301640346|gb|ADK85668.1| flagellar hook capping protein [Desulfarculus baarsii DSM 2075]
          Length = 282

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ---ELLKSNNL 79
           LGQDAFL + + Q+ +Q+P +PM  +E  AQLA FSQ+E+  Q+  +++   +L  S + 
Sbjct: 28  LGQDAFLTMFMAQVTNQNPLDPMDNTEFTAQLATFSQLEKLTQIAESMEGISDLQTSMDK 87

Query: 80  AQASSYIGKNITNADG 95
           + A  Y+GK +T +  
Sbjct: 88  SVALGYLGKEVTVSGN 103


>gi|91794996|ref|YP_564647.1| flagellar hook capping protein [Shewanella denitrificans OS217]
 gi|91716998|gb|ABE56924.1| flagellar hook capping protein [Shewanella denitrificans OS217]
          Length = 220

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           ++ + T        +     ++ F+ L+I QIK+QDPT+P++++E V+QLA FSQ+E   
Sbjct: 9   SQGSHTANVLQSPGNDAASLKNEFMTLMIAQIKNQDPTKPIESAEYVSQLAQFSQVESLE 68

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
            M         ++++  + Q++S IGK+ T    ++ 
Sbjct: 69  YMRKNQSSQMVMMENLGIVQSASLIGKSATVPASNLQ 105


>gi|82544459|ref|YP_408406.1| flagellar basal body rod modification protein [Shigella boydii
           Sb227]
 gi|81245870|gb|ABB66578.1| initiation of hook assembly [Shigella boydii Sb227]
 gi|320186978|gb|EFW61691.1| Flagellar basal-body rod modification protein FlgD [Shigella
           flexneri CDC 796-83]
 gi|332094132|gb|EGI99184.1| basal-body rod modification protein flgD [Shigella boydii 3594-74]
          Length = 231

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+ L  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTMLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|163853492|ref|YP_001641535.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
 gi|163665097|gb|ABY32464.1| flagellar hook capping protein [Methylobacterium extorquens PA1]
          Length = 226

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                +            FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ NS+
Sbjct: 17  ASAASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSS 76

Query: 70  LQELLKSNN---LAQASSYIGKNITNADGSI 97
           L  +L ++     + AS  IG+ IT    + 
Sbjct: 77  LDTILTNSKAASASSASGLIGRTITADGATT 107


>gi|226944491|ref|YP_002799564.1| flagellar basal body rod modification protein [Azotobacter
           vinelandii DJ]
 gi|226719418|gb|ACO78589.1| Flagellar hook capping protein [Azotobacter vinelandii DJ]
          Length = 222

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           + + +N T      + +   L ++ F+ LLI Q+++QDP +PM+ +E  +QLA  + +  
Sbjct: 8   VVSAINGTTSTTQSASTSDEL-RENFMTLLIAQLQNQDPLKPMENAELTSQLAQINTLNG 66

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
             ++N+TL+ +   +      QA++ +G  +  +   +
Sbjct: 67  IEELNATLEGITGQIDETQALQAAALVGHGVLVSGSQV 104


>gi|167948871|ref|ZP_02535945.1| flagellar basal body rod modification protein [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 113

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 12 QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +    + L  + F+ L++T++ HQDP +PM+ +E   Q++ F+ +     +N +  
Sbjct: 17 SATPQEPVDQGLEMEDFMNLMVTELTHQDPFKPMENTELATQISQFAAVSGIDDLNKSFT 76

Query: 72 ELLKSNNLAQASSYIGKNITNADG 95
           L  S +L   ++  G+    A G
Sbjct: 77 GLSSSMHLRSGAT--GRQFVGAPG 98


>gi|149911703|ref|ZP_01900311.1| flagellar basal body rod modification protein [Moritella sp. PE36]
 gi|149805233|gb|EDM65250.1| flagellar basal body rod modification protein [Moritella sp. PE36]
          Length = 237

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 11/110 (10%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
             E +   S+K LGQ+ F  LL  ++  QDP +P++ SE VAQ+A F+  +    M S  
Sbjct: 24  AAEQAAESSRKELGQEDFFSLLTQELAFQDPFKPVENSEMVAQMASFTTADGIANMGSKF 83

Query: 71  QEL---LKSNNLAQASSYIGKNITN--------ADGSISGVVNAIQVSST 109
           ++L   + SN   QASS +G  +          A  S+SG +   Q +  
Sbjct: 84  EQLTTIMSSNQALQASSLVGTKVLAPASTAFLSAGESVSGRIELPQNAPN 133


>gi|89069831|ref|ZP_01157166.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
 gi|89044632|gb|EAR50748.1| Possible FlgD protein [Oceanicola granulosus HTCC2516]
          Length = 183

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 31  LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
           +L  Q+K+QDP  P+++++   QLA FSQ+EQ V  N  L  L   L +  L Q + ++G
Sbjct: 1   MLTVQLKNQDPLNPVESADYAVQLATFSQVEQQVLTNDLLTSLSEQLGAAGLGQVADWVG 60

Query: 88  KN------ITNADGSISGVVNAIQVSSTGLTAITVDNT 119
           +       ++    +I  VV   + +      +  +N 
Sbjct: 61  REARVAAAVSYVGTAIDVVVKPAEGADLAYIVLRDENG 98


>gi|313624711|gb|EFR94666.1| flagellar hook capping protein [Listeria innocua FSL J1-023]
          Length = 140

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +           S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+     D 
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPMTYVTEIN 140


>gi|150390480|ref|YP_001320529.1| flagellar hook capping protein [Alkaliphilus metalliredigens
          QYMF]
 gi|149950342|gb|ABR48870.1| flagellar hook capping protein [Alkaliphilus metalliredigens
          QYMF]
          Length = 134

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 39/59 (66%)

Query: 14 FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
            K K+   L +DAFLKLL+TQ+ +QDP  PM+  E ++Q+A FS +EQ   +N  L++
Sbjct: 17 NEKKKNTSDLDKDAFLKLLVTQMSNQDPLNPMEDREFISQMAQFSSLEQMQNLNDGLKD 75


>gi|212634347|ref|YP_002310872.1| flagellar basal body rod modification protein [Shewanella
           piezotolerans WP3]
 gi|212555831|gb|ACJ28285.1| Flagellar hook capping protein [Shewanella piezotolerans WP3]
          Length = 267

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +      + + L Q+ F  LL  Q+  QDP +P+   + + Q+A FS ++   ++N  
Sbjct: 55  PAENSIPEPNSQELSQEDFFSLLSQQLSMQDPFKPVDNDQMIQQMASFSTVDGISKLNEE 114

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  L  S+   QAS  +G+ +       +G V+A + +   + +      ++ + 
Sbjct: 115 IVNLNALTTSSQALQASGLVGQKVLIPSD--TGYVSAEEPNIKAIVSTPEAIKDLTVR 170


>gi|153831740|ref|ZP_01984407.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
 gi|148872250|gb|EDL71067.1| flagellar basal body rod modification protein [Vibrio harveyi HY01]
          Length = 228

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
                  +  T  Q+ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ +  M+  +Q
Sbjct: 27  SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86

Query: 72  E---LLKSNNLAQASSYIGKNITNADGSIS 98
               LL +  +   +  +G+ +  +     
Sbjct: 87  NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116


>gi|330830304|ref|YP_004393256.1| flagellar hook capping protein [Aeromonas veronii B565]
 gi|328805440|gb|AEB50639.1| Flagellar hook capping protein [Aeromonas veronii B565]
          Length = 246

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 11/113 (9%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELLK 75
            KK L Q +FLKLL  Q+ +QDP +P+  ++ ++Q+   S  E    +++    L  L+ 
Sbjct: 25  PKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLMT 84

Query: 76  SNNLAQASSYIGKNITNA--------DGSISGVVNAIQVSSTGLTAITVDNTE 120
           S+   QAS+ +G+N+           +GSISGVV     +      ITV++ +
Sbjct: 85  SSQALQASALVGQNVLLPSNIGYLEKEGSISGVVAVGVENKYSNVKITVEDEK 137


>gi|238752867|ref|ZP_04614332.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
 gi|238708906|gb|EEQ01159.1| Basal-body rod modification protein [Yersinia rohdei ATCC 43380]
          Length = 218

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 1   MEINTEVNPTQQEFSK-----SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M IN   + +    +               + F+ LL+ QI++QDP  P   +E V+Q+A
Sbjct: 1   MNINENKSLSGNSGNSLLPAGDTITGDQLNNQFMTLLVAQIQNQDPLNPTDGTEFVSQMA 60

Query: 56  VFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSI-------SGVVNAIQ 105
             SQ++ +  M   L+     ++       ++ +G+N+    G+I       SG +   Q
Sbjct: 61  QLSQVQSTENMAKLLKSNTVQMEKMQAMATANLVGQNVMVESGTIELDNKKQSGRLTLQQ 120

Query: 106 VSSTGLTAITV 116
            +S  +  +T 
Sbjct: 121 AASDVVVYLTD 131


>gi|16799779|ref|NP_470047.1| flagellar basal body rod modification protein [Listeria innocua
           Clip11262]
 gi|16413156|emb|CAC95936.1| lin0704 [Listeria innocua Clip11262]
 gi|313620065|gb|EFR91578.1| flagellar hook capping protein [Listeria innocua FSL S4-378]
          Length = 140

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           +  +        S   KTLG+D F+KL +T +++QDP+ P+  +E ++Q+A  S MEQ  
Sbjct: 8   SGASQDTNNAVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVA 67

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTAITVD- 117
            M + + +L    +++ L  A ++IGK+   ++     ISG V ++Q ++ G+     D 
Sbjct: 68  NMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGQVESVQQTTNGVMLKIKDQ 127

Query: 118 NTEIPITTGIRIS 130
           ++ +P+T    I+
Sbjct: 128 DSLVPMTYVTEIN 140


>gi|330953720|gb|EGH53980.1| flagellar basal body rod modification protein [Pseudomonas syringae
           Cit 7]
          Length = 229

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    +K+ S  TLG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 16  LNTLQNPT---PTKTDSTGTLGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++     S S
Sbjct: 73  MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111


>gi|156976140|ref|YP_001447046.1| flagellar basal body rod modification protein [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527734|gb|ABU72819.1| hypothetical protein VIBHAR_04911 [Vibrio harveyi ATCC BAA-1116]
          Length = 228

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
                  +  T  Q+ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ +  M+  +Q
Sbjct: 27  SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86

Query: 72  E---LLKSNNLAQASSYIGKNITNADGSIS 98
               LL +  +   +  +G+ +  +     
Sbjct: 87  NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116


>gi|157961170|ref|YP_001501204.1| flagellar basal body rod modification protein [Shewanella pealeana
           ATCC 700345]
 gi|157846170|gb|ABV86669.1| flagellar hook capping protein [Shewanella pealeana ATCC 700345]
          Length = 270

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
            ++      + + L Q+ F  LL  Q+  QDP +P++  + + Q+A FS ++   ++N  
Sbjct: 58  PEENPIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEE 117

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSIS 98
              L  L  S+   QAS  +G+ +     +  
Sbjct: 118 IINLNALTSSSQALQASGLVGQKVLIPSDTAH 149


>gi|317009563|gb|ADU80143.1| flagellar basal body rod modification protein [Helicobacter
          pylori India7]
          Length = 306

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|94495412|ref|ZP_01301992.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
 gi|94424800|gb|EAT09821.1| flagellar scaffolding protein [Sphingomonas sp. SKA58]
          Length = 219

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +  ++      +      T+ Q +FLKLL  Q+++QDP EP+  +E V+Q+A  +     
Sbjct: 10  SAGLSVYNPNATVGTGSATMDQASFLKLLTAQMQYQDPFEPVDNAEMVSQMATITNSSGI 69

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLT 112
            +MN+ L  +   L    L  A+S+IGK+        + +A G  +G V+    ++    
Sbjct: 70  AEMNANLASIKQELTGTRLGDAASWIGKSMLVQSNVAVPDASGYYAGQVSFADATNGATV 129

Query: 113 AITVDNTEI 121
            +   +  +
Sbjct: 130 DLVDGSGNV 138


>gi|260768783|ref|ZP_05877717.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
 gi|260616813|gb|EEX41998.1| flagellar basal-body rod modification protein FlgD [Vibrio
           furnissii CIP 102972]
          Length = 234

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++    V     + + + +  +   + F+ L++ Q+++QDP  P   ++ V QLA F+Q+
Sbjct: 10  VDTRVTVQSASTKTTTNANSTSSLYNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQV 69

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           + +  M S L     ++ +  +   +  +G++++    ++         +  G   +T  
Sbjct: 70  QSTDNMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEG---TYNGSIELTSS 126

Query: 118 NTEIPITTGIRISN 131
           +  + +       N
Sbjct: 127 SNTVTLELVDEAGN 140


>gi|145298490|ref|YP_001141331.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851262|gb|ABO89583.1| flagellar hook capping protein FlgD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 242

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 11/114 (9%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS---TLQELL 74
             KK L Q +FLKLL  Q+ +QDP +P+  ++ ++Q+   S  E    +++    L  L+
Sbjct: 23  APKKELDQASFLKLLTMQLSYQDPFKPVDNAQMLSQMTSMSTSEGINSLSTQMGNLNTLM 82

Query: 75  KSNNLAQASSYIGKNI--------TNADGSISGVVNAIQVSSTGLTAITVDNTE 120
            S+   QAS+ +G+N+           +GSI GVV     +      ITV++ +
Sbjct: 83  TSSQALQASALVGQNVLLQSNVGFLENEGSIGGVVAVGVENKYTSVKITVEDEK 136


>gi|188583763|ref|YP_001927208.1| flagellar hook capping protein [Methylobacterium populi BJ001]
 gi|179347261|gb|ACB82673.1| flagellar hook capping protein [Methylobacterium populi BJ001]
          Length = 223

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +            FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ N++L 
Sbjct: 16  AAATADTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLD 75

Query: 72  ELLKSNN---LAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEI 121
            +L ++     + AS  IG+ IT        ADG  +  +   + ++  +  I   +  +
Sbjct: 76  TILTNSKAASASSASGLIGRTITADGASTDLADGKATWTLTPERAAAKAVVTIKSSDGTV 135

Query: 122 PITTGIR 128
             T    
Sbjct: 136 VATKTTT 142


>gi|157157345|ref|YP_001462309.1| flagellar basal body rod modification protein [Escherichia coli
           E24377A]
 gi|157079375|gb|ABV19083.1| flagellar hook capping protein FlgD [Escherichia coli E24377A]
          Length = 231

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMILGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|283955492|ref|ZP_06372987.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792953|gb|EFC31727.1| flagellar hook assembly protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 292

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
              TL +DAFLKLL+ +++HQDPT+PM + + + Q +  S +E     N+T+Q+++++  
Sbjct: 43  PNATLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETME 102

Query: 79  LAQAS----------SYIGKNITNADGSI 97
               S            IGK  T  +  +
Sbjct: 103 KLSNSFSTSMSTAAVGAIGKMATVNENKV 131


>gi|119469949|ref|ZP_01612754.1| flagellar basal body rod modification protein D [Alteromonadales
           bacterium TW-7]
 gi|119446659|gb|EAW27932.1| flagellar basal body rod modification protein D [Alteromonadales
           bacterium TW-7]
          Length = 226

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
            +  +    L Q+ F  LL  Q+  QDP++P    + +AQ+  F+  E    +NS  + L
Sbjct: 23  TTTEEQSDALTQEDFFSLLTQQLSFQDPSKPADNDQMIAQMTNFTMAEGISNLNSNFESL 82

Query: 74  ---LKSNNLAQASSYIGKNITNADGSI 97
              + SN+  QAS+ +GK       S+
Sbjct: 83  AASMTSNSALQASTLVGKQALLESDSL 109


>gi|271500065|ref|YP_003333090.1| flagellar hook capping protein [Dickeya dadantii Ech586]
 gi|270343620|gb|ACZ76385.1| flagellar hook capping protein [Dickeya dadantii Ech586]
          Length = 223

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM  ++ V+QLA  + +    ++N+TL  +   + SN   Q
Sbjct: 31  QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG  +     ++
Sbjct: 91  AASLIGHGVLVPGSTV 106


>gi|300918677|ref|ZP_07135258.1| flagellar hook capping protein [Escherichia coli MS 115-1]
 gi|300414171|gb|EFJ97481.1| flagellar hook capping protein [Escherichia coli MS 115-1]
          Length = 231

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA  S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGYGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|254563422|ref|YP_003070517.1| flagellar basal-body rod modification protein [Methylobacterium
           extorquens DM4]
 gi|254270700|emb|CAX26704.1| putative flagellar basal-body rod modification protein (Synonyms :
           FlgD flaV, fla FIV, fla FVI) [Methylobacterium
           extorquens DM4]
          Length = 226

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +            FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ NS+L 
Sbjct: 19  AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78

Query: 72  ELLKSNN---LAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVDNTEI 121
            +L ++     + AS  IG+ IT          G  +  +   + ++  +  +   +  +
Sbjct: 79  TILTNSKAASASSASGLIGRTITADGAATDLTNGKATWTLTPDRAAARAVITLKASDGTV 138

Query: 122 PITTGIR 128
             T    
Sbjct: 139 VATKTTT 145


>gi|154174409|ref|YP_001407312.1| flagellar basal body rod modification protein [Campylobacter curvus
           525.92]
 gi|112803496|gb|EAU00840.1| flagellar hook assembly protein [Campylobacter curvus 525.92]
          Length = 235

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              + +     L +DAF+KLL+T++++QDPT PM   + + Q +  + +E     NST++
Sbjct: 28  TGTTGANPNSQLDKDAFMKLLLTELQYQDPTSPMDTEKMLTQTSQLAALEMQENTNSTMR 87

Query: 72  EL---LKSNNLAQASSYIGKNITNADGSI 97
           +L   L+SN  A A S +GK ++    ++
Sbjct: 88  QLVAQLQSNANAYAISALGKMVSTGSNAV 116


>gi|269960115|ref|ZP_06174491.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi
           1DA3]
 gi|269835086|gb|EEZ89169.1| Flagellar basal-body rod modification protein flgD [Vibrio harveyi
           1DA3]
          Length = 228

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
                  +  T  Q+ F+ L++ QI++QDP  P+  +E V+QLA FSQ++ +  M+  +Q
Sbjct: 27  SANPSDMNSATSLQNEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQVQSTENMSMLMQ 86

Query: 72  E---LLKSNNLAQASSYIGKNITNADGSIS 98
               LL +  +   +  +G+ +  +     
Sbjct: 87  NSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 116


>gi|66046708|ref|YP_236549.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. syringae B728a]
 gi|63257415|gb|AAY38511.1| Flagellar hook capping protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972412|gb|EGH72478.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 229

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    + + +   LG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 16  LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++     S S
Sbjct: 73  MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111


>gi|224418357|ref|ZP_03656363.1| flagellar basal body rod modification protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253827677|ref|ZP_04870562.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141888|ref|ZP_07804081.1| flagellar basal body rod modification protein [Helicobacter
           canadensis MIT 98-5491]
 gi|253511083|gb|EES89742.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130919|gb|EFR48536.1| flagellar basal body rod modification protein [Helicobacter
           canadensis MIT 98-5491]
          Length = 356

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 14  FSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL 73
             +      LG +AF+KL + Q+K+QDPT PM+  E + Q A  +Q+E   QM + ++++
Sbjct: 96  AEEEDDNNGLGTEAFMKLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQTQMKNAMEQM 155

Query: 74  LKSNNLAQASS 84
             +    Q ++
Sbjct: 156 TTTMQSMQETN 166


>gi|208434812|ref|YP_002266478.1| hook assembly protein, flagella [Helicobacter pylori G27]
 gi|208432741|gb|ACI27612.1| hook assembly protein, flagella [Helicobacter pylori G27]
          Length = 316

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|90579908|ref|ZP_01235716.1| flagellar basal body rod modification protein [Vibrio angustum S14]
 gi|90438793|gb|EAS63976.1| flagellar basal body rod modification protein [Vibrio angustum S14]
          Length = 241

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
            +   K  L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN     L 
Sbjct: 30  QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLN 89

Query: 74  --LKSNNLAQASSYIGKNITNADGS 96
             + SN   QASS +G+++   + +
Sbjct: 90  SAMTSNQALQASSLVGQDVLIPNST 114


>gi|317012716|gb|ADU83324.1| flagellar basal body rod modification protein [Helicobacter
          pylori Lithuania75]
          Length = 316

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|260597444|ref|YP_003210015.1| flagellar basal body rod modification protein [Cronobacter
          turicensis z3032]
 gi|260216621|emb|CBA29915.1| Basal-body rod modification protein flgD [Cronobacter turicensis
          z3032]
          Length = 202

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
          + S  +  Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +    ++N+TL  +   
Sbjct: 2  TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 61

Query: 74 LKSNNLAQASSYIGKNITNADGSI 97
          + ++    AS+ IG  +     +I
Sbjct: 62 IDNSQSLAASALIGHGVMIPGSTI 85


>gi|257484950|ref|ZP_05638991.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011041|gb|EGH91097.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 228

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    + + +   LG+DAFL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 15  LNTLQNPTPTATNSTGT---LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++     S +
Sbjct: 72  MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110


>gi|163789643|ref|ZP_02184081.1| flagellar hook assembly protein [Carnobacterium sp. AT7]
 gi|159875175|gb|EDP69241.1| flagellar hook assembly protein [Carnobacterium sp. AT7]
          Length = 143

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQD------PTEPMKASEQVAQLAVFSQM 60
           +   +   S  K    L  + FL+++   IK          +     ++ +AQLA F+ +
Sbjct: 9   MGSIKNVSSTEKKNNELATEDFLQIMAASIKTPSLPGESGGSGGGGETDYLAQLAQFNTL 68

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTGLTAITVD 117
           +Q   ++ TL   +      Q  S +GK +  A    G ++G V+ ++    G   I V 
Sbjct: 69  DQLTTVSETLNMSVLMTQQQQGLSLLGKEVKVAGAESGFVNGTVDKVKF-DKGYATIQVG 127

Query: 118 NTEIPITTGIRISN 131
             +  +   + + +
Sbjct: 128 GKDYALNDILEVGD 141


>gi|308062225|gb|ADO04113.1| flagellar basal body rod modification protein [Helicobacter
          pylori Cuz20]
          Length = 319

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AFLKL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|120598231|ref|YP_962805.1| flagellar basal body rod modification protein [Shewanella sp.
           W3-18-1]
 gi|120558324|gb|ABM24251.1| flagellar hook capping protein [Shewanella sp. W3-18-1]
          Length = 253

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +        + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 41  PTESIVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNKE 100

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QA+  +G+ +     + +G V++   S  G+ + T     I + 
Sbjct: 101 IVNLNSVMTSSQALQATGLVGRKVLLP--TDTGYVSSENPSMKGVISTTEKIPVINVR 156


>gi|146293691|ref|YP_001184115.1| flagellar basal body rod modification protein [Shewanella
           putrefaciens CN-32]
 gi|145565381|gb|ABP76316.1| flagellar hook capping protein [Shewanella putrefaciens CN-32]
 gi|319427090|gb|ADV55164.1| flagellar hook capping protein [Shewanella putrefaciens 200]
          Length = 253

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS- 68
             +        + L Q+ F  LL  Q+  QDP +P+   + +AQ+A FS ++   ++N  
Sbjct: 41  PTESIVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNKE 100

Query: 69  --TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
              L  ++ S+   QAS  +G+ +     + +G V++   S  G+ + T     I + 
Sbjct: 101 IVNLNSVMTSSQALQASGLVGRKVLLP--TDTGYVSSENPSMKGVISTTEKIPVINVR 156


>gi|109947807|ref|YP_665035.1| flagellar basal body rod modification protein [Helicobacter
          acinonychis str. Sheeba]
 gi|109715028|emb|CAK00036.1| flagellar hook assembly protein [Helicobacter acinonychis str.
          Sheeba]
          Length = 292

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L +DAF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|254779510|ref|YP_003057616.1| flagellar basal body rod modification protein [Helicobacter
          pylori B38]
 gi|254001422|emb|CAX29417.1| Flagellar hook assembly protein FlgD [Helicobacter pylori B38]
          Length = 306

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|156934441|ref|YP_001438357.1| flagellar basal body rod modification protein [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532695|gb|ABU77521.1| hypothetical protein ESA_02272 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
           + S  +  Q +FL LL+ Q+K+QDPT PM+ +E   QLA  S +    ++N+TL  +   
Sbjct: 26  TGSNASDLQSSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSISGQ 85

Query: 74  LKSNNLAQASSYIGKNITNADGSI 97
           + ++    AS+ IG  +     +I
Sbjct: 86  IDNSQSLAASALIGHGVMIPGSTI 109


>gi|89075494|ref|ZP_01161905.1| flagellar basal body rod modification protein [Photobacterium sp.
           SKA34]
 gi|89048766|gb|EAR54337.1| flagellar basal body rod modification protein [Photobacterium sp.
           SKA34]
          Length = 241

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
            +   K  L QD FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN     L 
Sbjct: 30  QEVTGKNQLKQDDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGINKMNEQFGSLN 89

Query: 74  --LKSNNLAQASSYIGKNITNADGS 96
             + SN   QASS +G+++   + +
Sbjct: 90  SAMTSNQALQASSLVGQDVLIPNST 114


>gi|71737896|ref|YP_275564.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289627762|ref|ZP_06460716.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289651648|ref|ZP_06482991.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298487858|ref|ZP_07005898.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71558449|gb|AAZ37660.1| flagellar basal-body rod modification protein FlgD [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|298157583|gb|EFH98663.1| Flagellar basal-body rod modification protein flgD [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320325092|gb|EFW81161.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329351|gb|EFW85344.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330866421|gb|EGH01130.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330880521|gb|EGH14670.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330889086|gb|EGH21747.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330986467|gb|EGH84570.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 228

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    + + +   LG+DAFL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 15  LNTLQNPTPTATNSTGT---LGKDAFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 71

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++     S +
Sbjct: 72  MQNLTSTVDTIATSYKSSQALQASSLVGRSVIIDSSSTT 110


>gi|94312668|ref|YP_585877.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
 gi|93356520|gb|ABF10608.1| flagellar hook capping protein [Cupriavidus metallidurans CH34]
          Length = 222

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++  +   Q      +     Q+ FL +L+TQ+ +QDP  P+  S+  +QLA  S +   
Sbjct: 9   SSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGL 68

Query: 64  VQMNSTLQELLKS---NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
             MN+T+ +LL+    +    +++ IGK +           +A+ VS      I VD   
Sbjct: 69  QTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPG-------SAVSVSGGVPGQIGVDIPS 121

Query: 121 IPITTGIRISN 131
              +  +++ +
Sbjct: 122 TADSVTVQVLD 132


>gi|73539449|ref|YP_299816.1| flagellar basal body rod modification protein [Ralstonia eutropha
           JMP134]
 gi|72122786|gb|AAZ64972.1| Flagellar hook capping protein [Ralstonia eutropha JMP134]
          Length = 226

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                   +     Q  FLK+L+TQ+ +QDP  PM  ++  +QLA  S +     MNSTL
Sbjct: 20  NAALQSGSASAADLQSNFLKMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSSMQTMNSTL 79

Query: 71  QELLKSNNLAQ---ASSYIGKNITNADGSIS 98
            +LL   + ++   +++ IG+ +       S
Sbjct: 80  TQLLNQTSASRAMDSAALIGRTVMVPGSQFS 110


>gi|15645523|ref|NP_207699.1| flagellar basal body rod modification protein [Helicobacter
          pylori 26695]
 gi|2314043|gb|AAD07953.1| hook assembly protein, flagella (flgD) [Helicobacter pylori
          26695]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|217032454|ref|ZP_03437947.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
 gi|298736141|ref|YP_003728666.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
 gi|216945862|gb|EEC24482.1| hypothetical protein HPB128_175g15 [Helicobacter pylori B128]
 gi|298355330|emb|CBI66202.1| Flagellar hook capping protein FlgD [Helicobacter pylori B8]
          Length = 341

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|299822272|ref|ZP_07054158.1| flagellar hook capping protein [Listeria grayi DSM 20601]
 gi|299815801|gb|EFI83039.1| flagellar hook capping protein [Listeria grayi DSM 20601]
          Length = 145

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
                 + +  +L +D F+KL +T +++QDP+ P+  ++ ++Q++  + MEQ   M+S +
Sbjct: 18  DSNALTNAATNSLNKDDFMKLFLTSLQYQDPSSPLDTNQMMSQMSQLAMMEQVSNMSSAV 77

Query: 71  QELLKSNNLAQASSYIG------KNITNADGSISGVVNAIQVSSTGLTA-ITVDNTEIPI 123
            +L      +   S +G      K +      +SG+V +IQ ++ G+   +  ++T +P+
Sbjct: 78  NKLSDQAQSSAMQSAVGFIGKSIKGVNLNGDVVSGLVESIQQTTNGVMLKLKDNDTVVPL 137

Query: 124 TTGIRISN 131
           T    ++N
Sbjct: 138 TYITEVNN 145


>gi|312968851|ref|ZP_07783058.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
 gi|312286253|gb|EFR14166.1| basal-body rod modification protein flgD [Escherichia coli 2362-75]
          Length = 231

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q +FL LL+ Q+K+QDPT PM+ +E  +QLA+ S +    ++N+TL  +   + ++   Q
Sbjct: 32  QSSFLTLLVAQLKNQDPTNPMENNELTSQLALISTVSGIEKLNTTLGSISGQIDNSQSLQ 91

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           AS+ IG  +     ++     + + + T  T   V+  +        I++
Sbjct: 92  ASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITD 141


>gi|315586852|gb|ADU41233.1| hook assembly protein [Helicobacter pylori 35A]
          Length = 316

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|317177696|dbj|BAJ55485.1| flagellar basal body rod modification protein [Helicobacter
          pylori F16]
          Length = 311

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|207092211|ref|ZP_03239998.1| flagellar basal body rod modification protein [Helicobacter
          pylori HPKX_438_AG0C1]
          Length = 311

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGSKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|323492339|ref|ZP_08097492.1| flagellar basal body rod modification protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313386|gb|EGA66497.1| flagellar basal body rod modification protein [Vibrio brasiliensis
           LMG 20546]
          Length = 226

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++ +              S  +L  + F+ L++ QI++QDP  P+  +E V+QLA FSQ+
Sbjct: 15  LDTSGAQQGISGNPLDMNSASSLE-NEFISLMVAQIQNQDPLNPLDGTEYVSQLAQFSQV 73

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           + +  M++ +Q    LL +  +   +  +G+ +  +     
Sbjct: 74  QSTENMSTMMQNSMVLLDNMQVLSTAGLVGQTVYVSSNEFE 114


>gi|332673745|gb|AEE70562.1| hook assembly protein [Helicobacter pylori 83]
          Length = 319

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|323700470|ref|ZP_08112382.1| flagellar hook capping protein [Desulfovibrio sp. ND132]
 gi|323460402|gb|EGB16267.1| flagellar hook capping protein [Desulfovibrio desulfuricans ND132]
          Length = 225

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + +       + ++S  +L  D F+ LL T++++QDPTEP+  ++ V Q+  +SQ+EQ  
Sbjct: 11  SLLASYTDTTTTTESATSLTSDDFITLLCTELEYQDPTEPVDNTQMVDQMTQYSQLEQLT 70

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
           +MN  +  L   L +  ++    Y+GK +     +I+   + + 
Sbjct: 71  EMNEKMDTLTDALDAQGISSGLDYLGKEVEADGYTINKDGDDVS 114


>gi|218532350|ref|YP_002423166.1| flagellar hook capping protein [Methylobacterium chloromethanicum
           CM4]
 gi|218524653|gb|ACK85238.1| flagellar hook capping protein [Methylobacterium chloromethanicum
           CM4]
          Length = 226

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +            FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ NS+L 
Sbjct: 19  AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78

Query: 72  ELLKSNN---LAQASSYIGKNITNADGSI 97
            +L ++     + AS  IG+ IT    + 
Sbjct: 79  TILTNSKAASASSASGLIGRTITADGATT 107


>gi|317014316|gb|ADU81752.1| flagellar basal body rod modification protein [Helicobacter
          pylori Gambia94/24]
          Length = 301

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|188527732|ref|YP_001910419.1| flagellar basal body rod modification protein [Helicobacter
          pylori Shi470]
 gi|188143972|gb|ACD48389.1| flagellar basal body rod modification protein [Helicobacter
          pylori Shi470]
          Length = 324

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AFLKL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|187926955|ref|YP_001893300.1| flagellar hook capping protein [Ralstonia pickettii 12J]
 gi|241665284|ref|YP_002983643.1| flagellar hook capping protein [Ralstonia pickettii 12D]
 gi|187728709|gb|ACD29873.1| flagellar hook capping protein [Ralstonia pickettii 12J]
 gi|240867311|gb|ACS64971.1| flagellar hook capping protein [Ralstonia pickettii 12D]
          Length = 215

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 50/94 (53%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T    T    + S +  T  Q+ F++LL+ Q+++QDP  PM  S+  +QLA  + +    
Sbjct: 7   TSTPSTNTSNNLSITSGTDLQNTFMQLLVAQLQNQDPLNPMDNSQMTSQLAQINTVNGIQ 66

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
           Q+N+T+  +   N   QASS IG+ +     +++
Sbjct: 67  QLNTTMSSMATQNAATQASSLIGRTVQVPSSTLT 100


>gi|322378867|ref|ZP_08053284.1| flagellar basal body rod modification protein [Helicobacter suis
           HS1]
 gi|322380409|ref|ZP_08054615.1| flagellar basal body rod modification protein [Helicobacter suis
           HS5]
 gi|321147199|gb|EFX41893.1| flagellar basal body rod modification protein [Helicobacter suis
           HS5]
 gi|321148677|gb|EFX43160.1| flagellar basal body rod modification protein [Helicobacter suis
           HS1]
          Length = 446

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 45/83 (54%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           E+       +++  + K    L +DAF+KL + Q+K+QDPT PM+  + ++Q A  SQ+E
Sbjct: 19  EVTGAKAAMEKKKHEPKVANGLNKDAFMKLFLEQLKNQDPTAPMETDKIISQTAQLSQVE 78

Query: 62  QSVQMNSTLQELLKSNNLAQASS 84
              +    ++E+  +    + ++
Sbjct: 79  MQEENKKAMKEVADAMQSTKETN 101


>gi|240140912|ref|YP_002965392.1| putative flagellar basal-body rod modification protein (Synonyms :
           FlgD flaV, fla FIV, fla FVI) [Methylobacterium
           extorquens AM1]
 gi|240010889|gb|ACS42115.1| putative flagellar basal-body rod modification protein (Synonyms :
           FlgD flaV, fla FIV, fla FVI) [Methylobacterium
           extorquens AM1]
          Length = 226

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 10/127 (7%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQ 71
              +            FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ NS+L 
Sbjct: 19  AASTTDTKSIAGNFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNSSLD 78

Query: 72  ELLKSNN---LAQASSYIGKNITNAD-------GSISGVVNAIQVSSTGLTAITVDNTEI 121
            +L ++     + AS  IG+ IT          G  +  +   + ++  +  +   +  +
Sbjct: 79  TILTNSKAASASSASGLIGRTITADGAATDLTNGKATWTLTPDRAAARAVITLKASDGTV 138

Query: 122 PITTGIR 128
             T    
Sbjct: 139 VATKTTT 145


>gi|149195337|ref|ZP_01872424.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
 gi|149134529|gb|EDM23018.1| Flagellar hook capping protein [Caminibacter mediatlanticus TB-2]
          Length = 223

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 1  MEINTEVNP--TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
          M + T  N   T            L +DAF++L + Q++ QDPT+PM   + + Q A  S
Sbjct: 1  MAVTTINNNVTTSGNDFVYNPNSQLDKDAFMQLFLKQLEMQDPTDPMDTDKMLEQTAYLS 60

Query: 59 QMEQSVQMNSTLQEL---LKSNNLAQASSYIGK 88
           ME +  M +TL  L   L+  +   + S IGK
Sbjct: 61 TMEMNQNMQTTLDNLANTLQQTSSLNSISAIGK 93


>gi|308063737|gb|ADO05624.1| flagellar basal body rod modification protein [Helicobacter
          pylori Sat464]
          Length = 309

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AFLKL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFLKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|34497158|ref|NP_901373.1| flagellar basal body rod modification protein [Chromobacterium
           violaceum ATCC 12472]
 gi|34103015|gb|AAQ59378.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
           ATCC 12472]
          Length = 225

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N +    +   +  K+    G D F+ LL+ QI++Q P +P   S+ V+QLA  SQM+ +
Sbjct: 15  NQQGGEQKVAPAAGKNGAQPGNDMFMTLLLAQIRNQSPLDPADPSQFVSQLAQMSQMQST 74

Query: 64  VQMNSTLQELLKSNNLAQASSY---IGKNITNADGSI 97
             M   LQ         Q  +    +GK +      I
Sbjct: 75  QDMLKQLQSQGAMLRELQGVALGAQVGKPVLLQTDRI 111


>gi|313200564|ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688]
 gi|312439880|gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688]
          Length = 218

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  +       S S S  +  QD F+ LLITQ+K QDP  PM  ++  +QLA  S +   
Sbjct: 6   NDLLTTMNTRKSSSGSSASDVQDRFMTLLITQMKSQDPLNPMDNAQVTSQLAQLSTVTGI 65

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
            ++N+T++ +   ++S+   QAS+ IG+ +     S++
Sbjct: 66  DKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLT 103


>gi|270156915|ref|ZP_06185572.1| flagellar basal body rod modification protein FlgD [Legionella
           longbeachae D-4968]
 gi|289164658|ref|YP_003454796.1| Flagellar basal-body rod modification protein FlgD [Legionella
           longbeachae NSW150]
 gi|269988940|gb|EEZ95194.1| flagellar basal body rod modification protein FlgD [Legionella
           longbeachae D-4968]
 gi|288857831|emb|CBJ11677.1| Flagellar basal-body rod modification protein FlgD [Legionella
           longbeachae NSW150]
          Length = 224

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
           S  KK   +  FL  ++ QI++QD  +     E ++QLA F+  +  + M  +LQ++   
Sbjct: 21  SPLKKNFEEQVFLHSMVEQIENQDMMQRQINHEFLSQLAQFATHDGCIAMQESLQQMSTS 80

Query: 74  LKSNNLAQASSYIGKNITNADG 95
           L+SN   QAS+ +G+ +     
Sbjct: 81  LQSNQALQASALVGRKVLVETD 102


>gi|210135098|ref|YP_002301537.1| flagellar basal body rod modification protein [Helicobacter
          pylori P12]
 gi|210133066|gb|ACJ08057.1| flagellar hook assembly protein [Helicobacter pylori P12]
          Length = 339

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|108563314|ref|YP_627630.1| flagellar basal body rod modification protein [Helicobacter
          pylori HPAG1]
 gi|107837087|gb|ABF84956.1| hook assembly protein, flagella [Helicobacter pylori HPAG1]
          Length = 327

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|307131610|ref|YP_003883626.1| flagellar basal-body rod modification protein flgD [Dickeya
           dadantii 3937]
 gi|306529139|gb|ADM99069.1| Flagellar basal-body rod modification protein flgD [Dickeya
           dadantii 3937]
          Length = 223

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM  ++ V+QLA  + +    ++N+TL  +   + SN   Q
Sbjct: 31  QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSIQ 90

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG  +      +
Sbjct: 91  AASLIGHGVLVPGTKV 106


>gi|317180243|dbj|BAJ58029.1| flagellar basal body rod modification protein [Helicobacter
          pylori F32]
          Length = 329

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|308183060|ref|YP_003927187.1| flagellar basal body rod modification protein [Helicobacter
          pylori PeCan4]
 gi|308065245|gb|ADO07137.1| flagellar basal body rod modification protein [Helicobacter
          pylori PeCan4]
          Length = 306

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|257866384|ref|ZP_05646037.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257873100|ref|ZP_05652753.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257800342|gb|EEV29370.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257807264|gb|EEV36086.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 143

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSV 64
                 +++K    +  D FLK+L   + +        +    ++ ++QL  F+ +E   
Sbjct: 13  ANTSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLN 72

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
           +++ TL   +      QA S I K +T  DG  ++SG +  ++ +  G   I V+  E  
Sbjct: 73  ELSETLTTSVILQQQQQAFSLINKQVTLMDGIETLSGTIEKVRFA-NGYATIVVNGKEYS 131

Query: 123 ITTGIRIS 130
           ++    I 
Sbjct: 132 MSAIQEIG 139


>gi|242278415|ref|YP_002990544.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
 gi|242121309|gb|ACS79005.1| flagellar hook capping protein [Desulfovibrio salexigens DSM 2638]
          Length = 226

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNL 79
           L Q  FL LL TQ+++QDPT P   +  + Q+  ++ +++ V  N  L+ ++        
Sbjct: 30  LDQVDFLTLLTTQLQYQDPTNPTDNTAMINQMTNYAMLDEDVAQNENLEAIINQLDALAS 89

Query: 80  AQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
              +  IG+ +    GS S       V     T +T+D  +     GI I +
Sbjct: 90  LSTAGLIGEEVMAPGGSFS-------VEGGEATGVTIDLQDDASEVGINIYD 134


>gi|317011117|gb|ADU84864.1| flagellar basal body rod modification protein [Helicobacter
          pylori SouthAfrica7]
          Length = 382

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 45/83 (54%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  + +    L +DAF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPQIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|71906390|ref|YP_283977.1| flagellar hook capping protein [Dechloromonas aromatica RCB]
 gi|71846011|gb|AAZ45507.1| Flagellar hook capping protein [Dechloromonas aromatica RCB]
          Length = 229

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQ 81
           QD+FL +L TQ+K+QDP  PM  ++  +QLA  S +E    +N+TL  LL S   +   Q
Sbjct: 37  QDSFLTMLTTQLKNQDPLNPMDNAQMTSQLAQISTLEGIQGLNTTLTSLLSSYNTSQALQ 96

Query: 82  ASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
           A+  IG  +       SG+  +  +S  G+T  +  N+ +
Sbjct: 97  AAGAIGSQVLVEG---SGLALSSGISQGGVTLGSAANSVV 133


>gi|87119677|ref|ZP_01075574.1| flagellar basal body rod modification protein [Marinomonas sp.
           MED121]
 gi|86165153|gb|EAQ66421.1| flagellar basal body rod modification protein [Marinomonas sp.
           MED121]
          Length = 230

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 15  SKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL- 73
           +K  SK     D F+ L I Q+K QDPT+P   ++ V+Q+A  S +E+   +++ L+ + 
Sbjct: 30  AKEDSKALTDTDVFMTLYIEQLKAQDPTDPQDTNKMVSQIAEMSSLEELSTISTQLESMT 89

Query: 74  --LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
             L S+    AS+ +G+ I     + S       +   G   I +   E+ ++T + I N
Sbjct: 90  SALTSSQAISASTLVGQKIMANTNTAS-------LDEGGTVPIKMTIPEVSLSTTLEIRN 142


>gi|308184692|ref|YP_003928825.1| flagellar basal body rod modification protein [Helicobacter
          pylori SJM180]
 gi|308060612|gb|ADO02508.1| flagellar basal body rod modification protein [Helicobacter
          pylori SJM180]
          Length = 346

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|310767289|gb|ADP12239.1| flagellar basal body rod modification protein [Erwinia sp. Ejp617]
          Length = 224

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+TQ+K+QDPT PM  ++   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 32  QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 92  ASTLIGHGVMLNGTQI 107


>gi|226314864|ref|YP_002774760.1| hypothetical protein BBR47_52790 [Brevibacillus brevis NBRC 100599]
 gi|226097814|dbj|BAH46256.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 310

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  + P      K +    L Q+AF+KL++ Q+KHQDP  PM  S+ + Q ++ + +E+ 
Sbjct: 11  NPYIQPHMSYKGKKEFSTELDQNAFMKLMLEQLKHQDPMSPMDNSQFIQQTSMLTMVEKI 70

Query: 64  VQMNSTLQELLKSN-NLAQASSYIGKNITNA------------DGSISGVVNAIQVSSTG 110
            +M + +++   S   L +    +G+  + +                 GV++A+ +    
Sbjct: 71  TKMTTLMEQSNNSMVTLDKYEKLVGRTASYSLTTKDEMTGETKTEKKEGVLDAVYMDQGK 130

Query: 111 LTAITVDNTE-IPITTG 126
           +       +  IP+   
Sbjct: 131 IYFRIAGESTPIPLADV 147


>gi|299066541|emb|CBJ37731.1| putative Flagellar hook capping protein (flgD) [Ralstonia
          solanacearum CMR15]
          Length = 134

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
          T    +    + S    +L    FLK+L+TQ+ +QDP +PM   + +AQ+A F+ + QS 
Sbjct: 2  TIAAASSATGTSSSQVNSLNMQDFLKVLLTQLTYQDPLKPMDNQQFMAQIAQFTALGQSQ 61

Query: 65 QMNSTLQELLKSNNLAQASSYIGKNIT 91
          QMNS ++ L+ +    Q+   IG+ + 
Sbjct: 62 QMNSNIETLVSNQASLQSVGLIGRTVD 88


>gi|297380104|gb|ADI34991.1| hook assembly protein, flagella [Helicobacter pylori v225d]
          Length = 316

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|307637596|gb|ADN80046.1| Flagellar basal-body rod modification protein [Helicobacter
          pylori 908]
 gi|325996189|gb|ADZ51594.1| Flagellar basal-body rod modification protein [Helicobacter
          pylori 2018]
 gi|325997785|gb|ADZ49993.1| Flagellar basal-body rod modification protein [Helicobacter
          pylori 2017]
          Length = 325

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|283478795|emb|CAY74711.1| Basal-body rod modification protein flgD [Erwinia pyrifoliae DSM
           12163]
          Length = 226

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+TQ+K+QDPT PM  ++   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 34  QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 93

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 94  ASTLIGHGVMLNGTQI 109


>gi|251789167|ref|YP_003003888.1| flagellar basal body rod modification protein [Dickeya zeae
           Ech1591]
 gi|247537788|gb|ACT06409.1| flagellar hook capping protein [Dickeya zeae Ech1591]
          Length = 223

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM  ++ V+QLA  + +    ++N+TL  +   + SN   Q
Sbjct: 31  QNSFLTLLVAQLKNQDPTNPMDNNQLVSQLAQLNTVSGIEKLNTTLGSISTQINSNQSVQ 90

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG  +     ++
Sbjct: 91  AASLIGHGVLVPGSTV 106


>gi|15611910|ref|NP_223561.1| flagellar basal body rod modification protein [Helicobacter
          pylori J99]
 gi|4155413|gb|AAD06421.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 363

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|261839697|gb|ACX99462.1| flagellar basal body rod modification protein [Helicobacter
          pylori 52]
          Length = 354

 Score = 68.1 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|157146227|ref|YP_001453546.1| flagellar basal body rod modification protein [Citrobacter koseri
           ATCC BAA-895]
 gi|157083432|gb|ABV13110.1| hypothetical protein CKO_01984 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+ V  T    S + S  +  Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12  NSGVASTSSGSSLTGSSASDLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            ++N+TL  +   + ++   QAS+ IG  +     +I
Sbjct: 72  EKLNTTLGAISGQIDNSQSLQASTLIGHGVMIPGTTI 108


>gi|126730148|ref|ZP_01745960.1| Possible FlgD protein [Sagittula stellata E-37]
 gi|126709528|gb|EBA08582.1| Possible FlgD protein [Sagittula stellata E-37]
          Length = 188

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 31  LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS---NNLAQASSYIG 87
           +L  Q+++QDP  P+ ++E   QLA FS +EQ VQ N  L+ +  +   N+L +   +IG
Sbjct: 1   MLTVQVQNQDPLNPVDSTEYATQLATFSSVEQQVQTNELLRNISATLGGNSLNEFGRWIG 60

Query: 88  KNITNADGSISGVVNAIQVSSTGLTAIT 115
                      G+V A  +         
Sbjct: 61  ME---------GLVRAPAMFDGVAPVTI 79


>gi|317182207|dbj|BAJ59991.1| flagellar basal body rod modification protein [Helicobacter
          pylori F57]
          Length = 321

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|163803168|ref|ZP_02197051.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
 gi|159173068|gb|EDP57901.1| flagellar basal body rod modification protein D [Vibrio sp. AND4]
          Length = 228

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLG-----QDAFLKLLITQIKHQDPTEPMKASEQVAQLAV 56
           + +     +      S +   +      ++ F+ L++ QI++QDP  P+  +E V+QLA 
Sbjct: 12  DASVATTTSGDTGGISANPSDMNSATSLENEFISLMVAQIQNQDPLNPLDGTEYVSQLAQ 71

Query: 57  FSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           FSQ++ +  M   +Q    LL +  +   +  +G+ +  +     
Sbjct: 72  FSQVQSTENMAMLMQNSMVLLDNMQVLSTAGLVGQTVYVSANEFE 116


>gi|332994163|gb|AEF04218.1| flagellar basal body rod modification protein [Alteromonas sp. SN2]
          Length = 229

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 8/108 (7%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
             +++ L Q+ F  +L  Q+ +QDPT+P+   + VAQ+  F+  +   Q+N   +     
Sbjct: 25  DGTEQQLSQEDFFAMLTEQLANQDPTKPVDNDQMVAQMTSFTMADGISQLNDKFESFAAS 84

Query: 74  LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
           + SN   QASS IG+N+      + G V  +   + G++ + V+   +
Sbjct: 85  MTSNQALQASSLIGQNVL-----VQGNVGHMSSDAAGVSGVVVNEQSV 127


>gi|260222466|emb|CBA32058.1| hypothetical protein Csp_D30220 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 184

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSY 85
          +KLL+ Q+ +QDP  PM  ++  +Q+A  + +    ++N+T++ +     S  + Q +S 
Sbjct: 1  MKLLVAQLNNQDPMNPMDNAQMTSQIAQINTVSGIQELNATMKSMAEQFTSMQVLQGASM 60

Query: 86 IGKNITNADGSIS 98
          +G  +    G++S
Sbjct: 61 VGHGVLVESGTLS 73


>gi|238785498|ref|ZP_04629481.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
 gi|238713600|gb|EEQ05629.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
          Length = 230

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             +      + S S     Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    +
Sbjct: 15  NSSSGTNTNATSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +N+TL  +   + S+   QASS IG  +     ++
Sbjct: 75  LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109


>gi|259908813|ref|YP_002649169.1| flagellar basal body rod modification protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224964435|emb|CAX55944.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
           pyrifoliae Ep1/96]
          Length = 224

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+TQ+K+QDPT PM  ++   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 32  QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVERLNTTLGSISGQITSGQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 92  ASTLIGHGVMLNGTQI 107


>gi|217034409|ref|ZP_03439823.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
 gi|216943140|gb|EEC22612.1| hypothetical protein HP9810_884g14 [Helicobacter pylori 98-10]
          Length = 324

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVANAMKSNKETN 89


>gi|238793997|ref|ZP_04637615.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
 gi|238726629|gb|EEQ18165.1| Flagellar hook capping protein [Yersinia intermedia ATCC 29909]
          Length = 230

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                    + S S     Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    +
Sbjct: 15  TNATGANSTTGSGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +N+TL  +   + S+   QASS IG  +     ++
Sbjct: 75  LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTTV 109


>gi|289679030|ref|ZP_06499920.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. syringae FF5]
 gi|330899400|gb|EGH30819.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330943206|gb|EGH45613.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330975975|gb|EGH76041.1| flagellar basal body rod modification protein [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 229

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 6/99 (6%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +NT  NPT    + + +   LG+D+FL+LL+TQ+K+Q+P +P   ++ VAQLA FS +E 
Sbjct: 16  LNTLQNPTPTATNSTGT---LGKDSFLQLLVTQMKNQNPLDPQDNTQFVAQLAQFSSLES 72

Query: 63  SVQMNSTLQELLK---SNNLAQASSYIGKNITNADGSIS 98
              + ST+  +     S+   QASS +G+++     S S
Sbjct: 73  MQNLTSTVDTIASSYKSSQALQASSLVGRSVIIDASSTS 111


>gi|255598719|ref|XP_002537066.1| Basal-body rod modification protein flgD, putative [Ricinus
           communis]
 gi|223517601|gb|EEF25315.1| Basal-body rod modification protein flgD, putative [Ricinus
           communis]
          Length = 222

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                  S S     QD F+ LL+TQ+K+QDP  PM  ++  +Q+A  + +    ++N T
Sbjct: 16  NSVNTRNSASTTDETQDRFMTLLVTQMKNQDPLNPMDNAQVTSQMAQLNTVTGINKLNET 75

Query: 70  LQELLKSNNLAQA---SSYIGKNITNADGSIS 98
           +  L+ S  L Q+   +S IG+N+     +++
Sbjct: 76  MSSLIGSVQLGQSYQATSMIGRNVLVEGKTLT 107


>gi|261838283|gb|ACX98049.1| hook assembly protein [Helicobacter pylori 51]
          Length = 334

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAAQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|317178741|dbj|BAJ56529.1| flagellar basal body rod modification protein [Helicobacter
          pylori F30]
          Length = 329

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+       +++  +      L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGAKAVQERKKEQPAIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             +   T+QE+  +    + ++
Sbjct: 67 MQEENKKTMQEVASAMKSNKETN 89


>gi|332162902|ref|YP_004299479.1| Basal-body rod modification protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604251|emb|CBY25749.1| flagellar basal-body rod modification protein FlgD [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667132|gb|ADZ43776.1| Basal-body rod modification protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863352|emb|CBX73475.1| hypothetical protein YEW_ES20700 [Yersinia enterocolitica W22703]
          Length = 219

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           E+N++   +        +   L  + F+ LL+ QI++QDP  PM  +E V Q+A  SQ++
Sbjct: 9   ELNSKSIMSGSRQEVLPNGDELN-NQFMTLLVAQIQNQDPLNPMDGTEFVGQMAQLSQVQ 67

Query: 62  QSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
            +  M   L+     ++        + +G+ +      + 
Sbjct: 68  STENMAKMLKSNTVQMERVQAMATVNLVGQQVMVESDEVE 107


>gi|242310748|ref|ZP_04809903.1| flagellar basal body rod modification protein [Helicobacter
           pullorum MIT 98-5489]
 gi|239523146|gb|EEQ63012.1| flagellar basal body rod modification protein [Helicobacter
           pullorum MIT 98-5489]
          Length = 379

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 44/81 (54%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           NT    T     + +    LG +AF++L + Q+K+QDPT PM+  E + Q A  +Q+E  
Sbjct: 98  NTFPGDTPIIKDEEEDNNGLGTEAFMRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQ 157

Query: 64  VQMNSTLQELLKSNNLAQASS 84
            QM + ++++  +    Q ++
Sbjct: 158 TQMKNAMEQMTTTMQSMQETN 178


>gi|257871295|ref|ZP_05650948.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257875997|ref|ZP_05655650.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|325567525|ref|ZP_08144192.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC
           12755]
 gi|257805459|gb|EEV34281.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257810163|gb|EEV38983.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|325158958|gb|EGC71104.1| flagellar hook assembly protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 143

 Score = 67.8 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA----SEQVAQLAVFSQMEQSV 64
                 +++K    +  D FLK+L   + +        +    ++ ++QL  F+ +E   
Sbjct: 13  ANTSALTQTKKSSDISMDDFLKILAASMSNPSMGGSDSSGGGSTDYISQLVQFTTLESLN 72

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADG--SISGVVNAIQVSSTGLTAITVDNTEIP 122
           +++ TL   +      QA S I K +T  DG  ++SG +  ++ +  G   I V+  E  
Sbjct: 73  ELSETLTTSVILQQQQQAFSLINKQVTLMDGTETLSGTIEKVRFA-NGYATIVVNGKEYS 131

Query: 123 ITTGIRIS 130
           ++    I 
Sbjct: 132 MSAIQEIG 139


>gi|189426346|ref|YP_001953523.1| flagellar hook capping protein [Geobacter lovleyi SZ]
 gi|189422605|gb|ACD97003.1| flagellar hook capping protein [Geobacter lovleyi SZ]
          Length = 223

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 23  LGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---L 79
           +  DAFLKL I QI++QDP  P   ++ ++Q++  +Q+EQS    + L  LL + +    
Sbjct: 27  MDTDAFLKLFIAQIQYQDPLAPQDTNDMLSQISQLTQVEQSYNTATALNNLLTAQSNSLA 86

Query: 80  AQASSYIGKNITNADGSI 97
             +   IGK+I     S+
Sbjct: 87  LSSVGLIGKDIVALGDSL 104


>gi|83720138|ref|YP_440800.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis E264]
 gi|167617584|ref|ZP_02386215.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis Bt4]
 gi|257140549|ref|ZP_05588811.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis E264]
 gi|83653963|gb|ABC38026.1| basal-body rod modification protein FlgD [Burkholderia
           thailandensis E264]
          Length = 278

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 46  SGASSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 105

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 106 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 142


>gi|288958685|ref|YP_003449026.1| flagellar basal-body rod modification protein [Azospirillum sp.
           B510]
 gi|288910993|dbj|BAI72482.1| flagellar basal-body rod modification protein [Azospirillum sp.
           B510]
          Length = 251

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           E +       Q+ + +          FL +L TQ+K+QDP +P+  ++   QL  F+ +E
Sbjct: 33  ETSKTPQTDAQKTASATKGLGDNFQTFLTMLTTQMKNQDPLKPLDTNDMTKQLVDFANVE 92

Query: 62  QSVQMNSTLQELLKSNN---LAQASSYIGKNITNADGSIS 98
           Q++  NS L +L++  +    +   +Y+G+ +     +  
Sbjct: 93  QNIGTNSRLDKLVQLQSAGTASTNLAYLGRTVAFQGDTFQ 132


>gi|146305249|ref|YP_001185714.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina ymp]
 gi|145573450|gb|ABP82982.1| flagellar hook capping protein [Pseudomonas mendocina ymp]
          Length = 225

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
           + + + S  T  ++ FL L++ QI++QDPT+P+ ++E + Q A  SQ++    M S  + 
Sbjct: 21  KQAVNVSDATQLENNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKS 80

Query: 73  ---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
              LL +     A+  +G+ +  A   +    + ++       A       +  + G++
Sbjct: 81  NLVLLDNLQTLTAAGLVGQEVKVATEKLELGADKVKGEVNLEHAAGKLTLVVTDSNGVK 139


>gi|224373465|ref|YP_002607837.1| flagellar hook capping protein [Nautilia profundicola AmH]
 gi|223589079|gb|ACM92815.1| flagellar hook capping protein [Nautilia profundicola AmH]
          Length = 223

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LK 75
               L +DAF+KL + +++ QDPT+PM   + + Q A  S ME +  M  +L  L   L 
Sbjct: 21  PDSQLDKDAFMKLFLAELQMQDPTDPMDTDKMLEQTAYLSTMEMNDNMQKSLDNLSNVLS 80

Query: 76  SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
           + +     S IGK        ++     +      +        +I     I
Sbjct: 81  TTSQFSTLSAIGKMADTGYRYVN-----VTDDDNSVNFDLYFGDDIASGNVI 127


>gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074136|gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum
           seropedicae SmR1]
          Length = 240

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           M   +  + T      + +     Q+ FL LL+ Q+K+QDP  PM  S+  +Q+A  S +
Sbjct: 12  MNGTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNSQLTSQMAQLSTV 71

Query: 61  EQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLT 112
               Q+NSTL  L+    S+    +++ IG ++     S+       + +S    
Sbjct: 72  SGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTKDASGNDV 126


>gi|114777403|ref|ZP_01452400.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
 gi|114552185|gb|EAU54687.1| Flagellar hook capping protein [Mariprofundus ferrooxydans PV-1]
          Length = 221

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
                  Q   +   ++  LG+   FLKLL+ Q+++Q+P +P   ++  +QLA F+ +EQ
Sbjct: 5   TAATASGQAAQTTRTTQNDLGKKDIFLKLLVAQMQNQNPLKPQDPTQMSSQLAQFNMVEQ 64

Query: 63  SVQMNSTLQELLKSNN-----LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
               N+ LQ+L+ +++      +  +SY+GKN+T     I+    A   S          
Sbjct: 65  QTSSNALLQQLVDASSTQKATSSNGASYLGKNVTVQQDQINYTGTASNFSVVTDHPAAQA 124

Query: 118 NTEIPITTGIRI 129
              +  +TG  +
Sbjct: 125 QITVSDSTGTPV 136


>gi|123442785|ref|YP_001006762.1| flagellar basal body rod modification protein [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|122089746|emb|CAL12599.1| basal-body rod modification protein FlgD [Yersinia enterocolitica
          subsp. enterocolitica 8081]
          Length = 191

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIG 87
          +L+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + ++   QASS IG
Sbjct: 1  MLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDNSQSLQASSLIG 60

Query: 88 KNITNADGSI 97
          + +     ++
Sbjct: 61 RGVMVPGTNV 70


>gi|15895425|ref|NP_348774.1| flagellar hook assembly protein FlgD [Clostridium acetobutylicum
           ATCC 824]
 gi|15025149|gb|AAK80114.1|AE007716_3 Flagellar hook assembly protein FlgD [Clostridium acetobutylicum
           ATCC 824]
 gi|325509571|gb|ADZ21207.1| Flagellar hook assembly protein FlgD [Clostridium acetobutylicum EA
           2018]
          Length = 239

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           I               +  TLGQDAFLK+LI ++ HQDPT    +++ +AQLA FS +EQ
Sbjct: 16  ITENSKTAGGTQIVRNAGNTLGQDAFLKILIAEMSHQDPTSQQDSTQYIAQLAQFSNLEQ 75

Query: 63  SVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGL 111
              +N T+     S+ +    +   K          G V  +  +   +
Sbjct: 76  MTNLNRTMTFSGASSLMGGTVTL--KQYDPDGVPYRGEVQKVTKNGDTI 122


>gi|296283233|ref|ZP_06861231.1| flagellar hook capping protein [Citromicrobium bathyomarinum
          JL354]
          Length = 215

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 3/95 (3%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
          T   P       + ++     D FLKLL TQ+++QDP +PM+ SE   QL  +SQ+EQS+
Sbjct: 2  TSGVPGNGTGGAAGAELNANFDMFLKLLTTQMQNQDPLDPMETSEYTQQLTQYSQVEQSI 61

Query: 65 QMNSTLQEL---LKSNNLAQASSYIGKNITNADGS 96
          Q  + L+++   L + ++AQ+++++G+       +
Sbjct: 62 QQTAALKDILSALSTQDIAQSANFLGQRAELDSST 96


>gi|330501136|ref|YP_004378005.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina NK-01]
 gi|328915422|gb|AEB56253.1| flagellar basal body rod modification protein [Pseudomonas
           mendocina NK-01]
          Length = 225

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)

Query: 13  EFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
           + S + S  T  ++ FL L++ QI++QDPT+P+ ++E + Q A  SQ++    M S  + 
Sbjct: 21  KQSVNVSDATQLENNFLTLMVAQIQNQDPTKPVDSTEFLNQFAAMSQVKSLENMASLSKS 80

Query: 73  ---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIR 128
              LL +     A+  +G+ +  A   +    + ++       A       +  + G++
Sbjct: 81  NLVLLDNLQTLTAAGLVGQEVKVATEQLELGTDKVKGELNLEHAAGKLALVVTDSNGVK 139


>gi|238799106|ref|ZP_04642562.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
 gi|238717053|gb|EEQ08913.1| Flagellar hook capping protein [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                    + S S     Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    +
Sbjct: 15  NSTSGTNSTAASGSTSQDLQNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEK 74

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +N+TL  +   + S+   QASS IG  +     ++
Sbjct: 75  LNTTLGSISGQIDSSQSLQASSLIGHGVMIPGTNV 109


>gi|291613037|ref|YP_003523194.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
 gi|291583149|gb|ADE10807.1| flagellar hook capping protein [Sideroxydans lithotrophicus ES-1]
          Length = 220

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           QD FL LL+TQ+K+QDP  PM  ++  +Q+A  S +    Q+NST+Q L   + ++   Q
Sbjct: 28  QDRFLTLLVTQLKNQDPLNPMDNAQVTSQMAQLSTVSGINQLNSTVQALSASMATSQSLQ 87

Query: 82  ASSYIGKNITNADGSI 97
           A+S IG         I
Sbjct: 88  ATSMIGHAALVPGAQI 103


>gi|312172059|emb|CBX80316.1| Basal-body rod modification protein flgD [Erwinia amylovora ATCC
           BAA-2158]
          Length = 223

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+TQ+K+QDPT PM  ++   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 31  QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 91  ASTLIGHGVMVNGTQI 106


>gi|170743225|ref|YP_001771880.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
 gi|168197499|gb|ACA19446.1| flagellar hook capping protein [Methylobacterium sp. 4-46]
          Length = 233

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T    T+   +   +      + FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ +
Sbjct: 10  TGSAGTKTNTASDSATIAGNFNQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFASVEQQL 69

Query: 65  QMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96
           + N  L  ++   K+   + A+  +GK +T    +
Sbjct: 70  KTNDRLDTMVAASKAATASSAAGLVGKTVTADGAT 104


>gi|83309604|ref|YP_419868.1| flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
 gi|82944445|dbj|BAE49309.1| Flagellar hook capping protein [Magnetospirillum magneticum AMB-1]
          Length = 274

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
           K+      + FL +L TQ+KHQDP  PM +++   QL  FS +EQ +  NS L++L+   
Sbjct: 24  KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 83

Query: 75  KSNNLAQASSYIGKNITNAD 94
           ++   +Q  SY+G+ +  + 
Sbjct: 84  QTAQTSQGISYLGQTVEVSG 103


>gi|205373382|ref|ZP_03226186.1| flagellar basal body rod modification protein [Bacillus
          coahuilensis m4-4]
          Length = 94

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 50/85 (58%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          + I++ +  +  +  + +    LGQDAF+K+L+ ++++QDP  PM+  + +AQLA FSQ+
Sbjct: 3  ISIDSNLLLSTYQNEQRQVDNKLGQDAFMKILMAELQNQDPMNPMQDKDFIAQLATFSQL 62

Query: 61 EQSVQMNSTLQELLKSNNLAQASSY 85
          E+   M+ +L  +       Q  S+
Sbjct: 63 EELTGMSDSLDSMNAIQQQNQLLSF 87


>gi|292487938|ref|YP_003530813.1| basal-body rod modification protein FlgD [Erwinia amylovora
           CFBP1430]
 gi|292899157|ref|YP_003538526.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
           49946]
 gi|291199005|emb|CBJ46116.1| flagellar hook formation protein FlgD [Erwinia amylovora ATCC
           49946]
 gi|291553360|emb|CBA20405.1| Basal-body rod modification protein flgD [Erwinia amylovora
           CFBP1430]
          Length = 223

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL LL+TQ+K+QDPT PM  ++   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 31  QNNFLTLLVTQLKNQDPTNPMDNAQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 91  ASTLIGHGVMVNGTQI 106


>gi|32265683|ref|NP_859715.1| flagellar basal body rod modification protein [Helicobacter
          hepaticus ATCC 51449]
 gi|32261731|gb|AAP76781.1| flagellar hook assembly protein FlgD [Helicobacter hepaticus ATCC
          51449]
          Length = 273

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+        +E  K ++   L  DAF++L + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             Q   T+ E+ ++    Q ++
Sbjct: 67 MQEQNKKTMVEVAEAMKSTQETN 89


>gi|317047690|ref|YP_004115338.1| flagellar hook capping protein [Pantoea sp. At-9b]
 gi|316949307|gb|ADU68782.1| flagellar hook capping protein [Pantoea sp. At-9b]
          Length = 224

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 3   INTEVNPT---QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQ 59
           +N  ++PT       S + +     Q+ FL +L+TQ+++QDPT PM  S+   QLA  + 
Sbjct: 7   VNENLDPTVLSSSSSSSTGNSAEDLQNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINT 66

Query: 60  MEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +    ++N+TL  +   + ++   Q+++ IG  +      I
Sbjct: 67  LSGIEKLNTTLGSISGQISTSQNLQSTTLIGHGVMVDGSQI 107


>gi|83747655|ref|ZP_00944691.1| FlgD [Ralstonia solanacearum UW551]
 gi|207739738|ref|YP_002258131.1| basal-body rod modification protein flgd [Ralstonia solanacearum
          IPO1609]
 gi|83725707|gb|EAP72849.1| FlgD [Ralstonia solanacearum UW551]
 gi|206593120|emb|CAQ60026.1| basal-body rod modification protein flgd [Ralstonia solanacearum
          IPO1609]
          Length = 218

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
          Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +   +  +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89

Query: 85 YIGKNITNA 93
           IG+ +   
Sbjct: 90 LIGRTVEVP 98


>gi|315497624|ref|YP_004086428.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
 gi|315415636|gb|ADU12277.1| flagellar hook capping protein [Asticcacaulis excentricus CB 48]
          Length = 224

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--LKSNNLAQA 82
            + FL LL  QIK+QDP  PM +++   QL  ++ +EQ ++ N  L+ L  L + N+A +
Sbjct: 29  YETFLGLLTAQIKNQDPLSPMDSTQWTNQLVQYTSVEQQLKANEYLKSLVGLGAGNMASS 88

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
            + IGK       + +     +       +  +    E+    G  +
Sbjct: 89  VNMIGKTAIADIDTQTFKDKPLTWHYELASTASQVGVEVLDADGKTV 135


>gi|300696912|ref|YP_003747573.1| flagellar hook assembly protein, basal-body rod modification
          [Ralstonia solanacearum CFBP2957]
 gi|299073636|emb|CBJ53156.1| flagellar hook assembly protein, basal-body rod modification
          [Ralstonia solanacearum CFBP2957]
          Length = 218

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
          Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+TL  +   +  +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTLSSMATQSAASQASS 89

Query: 85 YIGKNITNA 93
           IG+ +   
Sbjct: 90 LIGRTVEVP 98


>gi|56551508|ref|YP_162347.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761152|ref|ZP_04759241.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|56543082|gb|AAV89236.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374771|gb|EER64232.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 230

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
                 L    FL LL TQ+K+QDP  P+  ++  AQ+A FS +    Q+N+T+  +   
Sbjct: 31  KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90

Query: 74  LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           + ++ L   S++IGK         T+ DG+ +G V     +S    ++     ++  +
Sbjct: 91  VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148


>gi|291276998|ref|YP_003516770.1| flagellar-hook assembly protein FlgD [Helicobacter mustelae
          12198]
 gi|290964192|emb|CBG40038.1| Putative flagellar-hook assembly protein, FlgD [Helicobacter
          mustelae 12198]
          Length = 279

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
           K    L +DAF+KL + Q+K+QDPT PM+  + + Q A  +Q+E   +   T++E+  +
Sbjct: 23 PKIANGLDKDAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMKEVASA 82

Query: 77 NNLAQASS 84
              + S+
Sbjct: 83 MQSTKESN 90


>gi|167835110|ref|ZP_02461993.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis MSMB43]
          Length = 268

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +     +    S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 36  SGTNANSNVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 95

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   + ++   QA+  IG N+     ++
Sbjct: 96  AQLNTALTSLSSQITASQQTQAAMLIGSNVLAPGNTV 132


>gi|23015642|ref|ZP_00055412.1| COG1843: Flagellar hook capping protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 277

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL--- 74
           K+      + FL +L TQ+KHQDP  PM +++   QL  FS +EQ +  NS L++L+   
Sbjct: 28  KATLGSNFNTFLTMLTTQLKHQDPLSPMDSTQFTNQLVQFSSVEQQINANSNLEKLIKLQ 87

Query: 75  KSNNLAQASSYIGKNITNAD 94
           ++   +Q  SY+G+ +  A 
Sbjct: 88  QTAQTSQGISYLGQTVEVAG 107


>gi|218288301|ref|ZP_03492600.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|258511378|ref|YP_003184812.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|218241660|gb|EED08833.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|257478104|gb|ACV58423.1| flagellar hook capping protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 159

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 65/117 (55%), Gaps = 11/117 (9%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST-------LQEL 73
            +L ++ F++LL+TQ+++QDP  P+  ++ +AQLA FS +E+  Q+  T       +Q L
Sbjct: 41  NSLNENDFMQLLVTQLQNQDPLNPVDNTQMLAQLAQFSALEEMTQVAQTDAQVLSAVQNL 100

Query: 74  LKSNNLAQASSYIGKNIT---NADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
               +L  A S IG ++T    +   + G V+++ ++  G   I V+ T  P+T  +
Sbjct: 101 ESEMSLLMAHSLIGASVTVQDASGNQVQGTVSSVTMNQ-GTPQIVVNGTSYPLTQVV 156


>gi|260752885|ref|YP_003225778.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552248|gb|ACV75194.1| flagellar hook capping protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 230

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
                 L    FL LL TQ+K+QDP  P+  ++  AQ+A FS +    Q+N+T+  +   
Sbjct: 31  KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAQMAQFSSVAGINQLNTTVSSIQSD 90

Query: 74  LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           + ++ L   S++IGK         T+ DG+ +G V     +S    ++     ++  +
Sbjct: 91  VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148


>gi|220925889|ref|YP_002501191.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060]
 gi|219950496|gb|ACL60888.1| flagellar hook capping protein [Methylobacterium nodulans ORS 2060]
          Length = 228

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
                      S   +      + FL LL TQ+++Q+P +P+  ++   QL  F+ +EQ 
Sbjct: 11  TANRTGGSASPSSDAATIAGNFNQFLTLLTTQLRNQNPLDPLDTNQFTQQLVQFASVEQQ 70

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGS 96
           ++ N  L  LL   K++  A A+  +G+ +T    +
Sbjct: 71  LKTNDRLDSLLTASKASAAATAAGLVGQTVTADGTT 106


>gi|167579487|ref|ZP_02372361.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis TXDOH]
          Length = 289

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 57  SGASSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 116

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 117 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 153


>gi|300693337|ref|YP_003749310.1| flagellar hook assembly protein, basal-body rod modification
           [Ralstonia solanacearum PSI07]
 gi|299075374|emb|CBJ34669.1| flagellar hook assembly protein, basal-body rod modification
           [Ralstonia solanacearum PSI07]
          Length = 218

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 51/105 (48%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +   +  +QASS
Sbjct: 30  QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89

Query: 85  YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
            IG+ +     ++S   +      +           I  + G  +
Sbjct: 90  LIGRTVEVPSSTLSLSSSTASFGISVPNGADDAVVTIKNSAGTTV 134


>gi|207728345|ref|YP_002256739.1| basal-body rod modification protein flgd [Ralstonia solanacearum
           MolK2]
 gi|206591591|emb|CAQ57203.1| basal-body rod modification protein flgd [Ralstonia solanacearum
           MolK2]
          Length = 218

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 52/105 (49%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +   +  +QASS
Sbjct: 30  QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 89

Query: 85  YIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
            IG+ +     ++S   +      +           I  ++G  +
Sbjct: 90  LIGRTVEVPSSTLSLSSSTASFGISVPNGADDAVVTIKNSSGTTV 134


>gi|313905133|ref|ZP_07838502.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
 gi|313470036|gb|EFR65369.1| flagellar hook capping protein [Eubacterium cellulosolvens 6]
          Length = 176

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 50/109 (45%)

Query: 9   PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
              +  S +  K TL   ++ KLL  Q+ +QD + PM  S+ + Q++  + ++    +  
Sbjct: 19  AATKATSVTTDKNTLSITSYFKLLAAQLANQDMSNPMSTSDMMNQMSQMAMVQSLTALTE 78

Query: 69  TLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           + +     +  + A+  IGK +T    S +     +Q  S   T ++V+
Sbjct: 79  STKSATSMSQQSYAAGMIGKEVTYNGKSYTSNGTLVQAGSRTGTIVSVN 127


>gi|17548565|ref|NP_521905.1| basal-body rod modification protein FlgD [Ralstonia solanacearum
           GMI1000]
 gi|17430813|emb|CAD17495.1| probable basal-body rod modification protein flgd [Ralstonia
           solanacearum GMI1000]
          Length = 221

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +   +  +QASS
Sbjct: 33  QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGIAQLNTTMSSMATQSAASQASS 92

Query: 85  YIGKNITNA 93
            IG+ +   
Sbjct: 93  LIGRTVEVP 101


>gi|306820121|ref|ZP_07453769.1| flagellar hook capping protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551899|gb|EFM39842.1| flagellar hook capping protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 158

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 35/54 (64%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
            +D F+KL + Q+KHQDP EPMK  + + Q+A F+ +EQ   M ++ ++  K+ 
Sbjct: 64  DKDTFIKLFVAQMKHQDPMEPMKNEQYMTQMAQFTAVEQMSNMATSFEKFAKNF 117


>gi|87307399|ref|ZP_01089544.1| probable basal-body rod modification protein FlgD [Blastopirellula
           marina DSM 3645]
 gi|87290139|gb|EAQ82028.1| probable basal-body rod modification protein FlgD [Blastopirellula
           marina DSM 3645]
          Length = 169

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
            D FLKL+I ++++QDP EPMK SE + Q+     +  + Q+++TL  +L   N+  A++
Sbjct: 1   MDQFLKLMIAELQNQDPMEPMKNSEMLEQIGQIRNITATEQLSTTLTNVLDGQNILSATT 60

Query: 85  YIGKNI---TNADGSISGVVNAIQVSSTG--------LTAITVDNTEIPITTGIRI 129
            IG  +   T+    + GVV   Q++                     + +     +
Sbjct: 61  LIGGQVQALTDQGDVVFGVVTGAQITPNDDGVREVFLKVMTDDGIATVKLDDIFTV 116


>gi|238764391|ref|ZP_04625341.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
 gi|238697417|gb|EEP90184.1| Flagellar hook capping protein [Yersinia kristensenii ATCC 33638]
          Length = 228

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+   Q
Sbjct: 32  QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           ASS IG  +     ++
Sbjct: 92  ASSLIGHGVMIPGTNV 107


>gi|238788314|ref|ZP_04632108.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641]
 gi|238723560|gb|EEQ15206.1| Flagellar hook capping protein [Yersinia frederiksenii ATCC 33641]
          Length = 230

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+   Q
Sbjct: 34  QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGAISGQIDSSQSLQ 93

Query: 82  ASSYIGKNITNADGSI 97
           ASS IG  +     SI
Sbjct: 94  ASSLIGHGVMIPGTSI 109


>gi|4378859|gb|AAD19727.1| basal-body rod modification protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 230

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
                 L    FL LL TQ+K+QDP  P+  ++  A +A FS +    Q+N+T+  +   
Sbjct: 31  KDPTAALSSTDFLTLLTTQLKYQDPDSPVDNTQMAAPMAQFSSVAGINQLNTTVSSIQSD 90

Query: 74  LKSNNLAQASSYIGKN-------ITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
           + ++ L   S++IGK         T+ DG+ +G V     +S    ++     ++  +
Sbjct: 91  VSNSRLGNVSNWIGKAGLVSSNIATSIDGTFAGQVKLDSAASDVKISLADSAGKVVYS 148


>gi|238758111|ref|ZP_04619291.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
 gi|238703649|gb|EEP96186.1| Flagellar hook capping protein [Yersinia aldovae ATCC 35236]
          Length = 230

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q++FL LL+ Q+K+QDPT PM+ +E   QLA  + +    ++N+TL  +   + S+   Q
Sbjct: 34  QNSFLTLLVAQLKNQDPTNPMQNNELTTQLAQINTVSGIEKLNTTLGSISGQIDSSQSLQ 93

Query: 82  ASSYIGKNITNADGSI 97
           ASS IG  +     +I
Sbjct: 94  ASSLIGHGVMIPGTAI 109


>gi|299068731|emb|CBJ39970.1| flagellar hook assembly protein, basal-body rod modification
          [Ralstonia solanacearum CMR15]
          Length = 218

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 42/69 (60%)

Query: 25 QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
          Q+ F++LL+ Q+K+QDP  PM  S+  +QLA  + +    Q+N+T+  +   +  +QASS
Sbjct: 30 QNTFMQLLVAQLKNQDPLNPMDNSQLTSQLAQINTVNGISQLNTTMSSMATQSAASQASS 89

Query: 85 YIGKNITNA 93
           IG+ +   
Sbjct: 90 LIGRTVEVP 98


>gi|224436454|ref|ZP_03657468.1| flagellar basal body rod modification protein [Helicobacter
          cinaedi CCUG 18818]
 gi|313142966|ref|ZP_07805159.1| flagellar basal body rod modification protein [Helicobacter
          cinaedi CCUG 18818]
 gi|313127997|gb|EFR45614.1| flagellar basal body rod modification protein [Helicobacter
          cinaedi CCUG 18818]
          Length = 273

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 2  EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
          E+        +E  K ++   L  DAF++L + Q+K+QDPT PM+  + + Q A  +Q+E
Sbjct: 7  EVTGSAAKIAKEKEKVRNINELDNDAFMRLFLEQLKNQDPTAPMETDKIITQTAQLTQVE 66

Query: 62 QSVQMNSTLQELLKSNNLAQASS 84
             Q   T+ E+ ++    Q ++
Sbjct: 67 MQEQNKKTMVEVAEAMKSTQETN 89


>gi|311087753|gb|ADP67832.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           JF98 (Acyrthosiphon pisum)]
          Length = 236

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           IN E          +       Q  FL LLI QIK+QDPT+P+K S+  +QLA  +    
Sbjct: 21  INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
             ++N+T+ +       N   Q S+ IG+++   +  I
Sbjct: 81  MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118


>gi|15616945|ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219681698|ref|YP_002468084.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|257471394|ref|ZP_05635393.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           LSR1 (Acyrthosiphon pisum)]
 gi|11386806|sp|P57421|FLGD_BUCAI RecName: Full=Basal-body rod modification protein flgD
 gi|25355178|pir||D84969 basal-body rod modification protein flgD [imported] - Buchnera sp.
           (strain APS)
 gi|10039010|dbj|BAB13044.1| basal-body rod modification protein flgD [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
 gi|219624541|gb|ACL30696.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
          Length = 236

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           IN E          +       Q  FL LLI QIK+QDPT+P+K S+  +QLA  +    
Sbjct: 21  INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
             ++N+T+ +       N   Q S+ IG+++   +  I
Sbjct: 81  MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118


>gi|268680905|ref|YP_003305336.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
          6946]
 gi|268618936|gb|ACZ13301.1| flagellar hook capping protein [Sulfurospirillum deleyianum DSM
          6946]
          Length = 229

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
          D FL+LL+T+++HQDPT+PM + + + Q A  S +E S    + L+EL    +     S 
Sbjct: 32 DDFLQLLLTELEHQDPTDPMDSDKILTQTAQLSSLEASQNTTAALEELSDQLSANTNFSA 91

Query: 86 IG 87
          IG
Sbjct: 92 IG 93


>gi|219682253|ref|YP_002468637.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219621986|gb|ACL30142.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|311086077|gb|ADP66159.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           LL01 (Acyrthosiphon pisum)]
 gi|311086648|gb|ADP66729.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087234|gb|ADP67314.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           JF99 (Acyrthosiphon pisum)]
          Length = 236

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           IN E          +       Q  FL LLI QIK+QDPT+P+K S+  +QLA  +    
Sbjct: 21  INNEAVKKNDNNLPNDINPPDLQKNFLSLLIAQIKNQDPTDPIKNSDLTSQLAQINTASG 80

Query: 63  SVQMNSTLQELLKS---NNLAQASSYIGKNITNADGSI 97
             ++N+T+ +       N   Q S+ IG+++   +  I
Sbjct: 81  MQKLNNTVDQFSNQISKNQNIQLSTLIGRHVMVPNKKI 118


>gi|315180487|gb|ADT87401.1| flagellar basal body rod modification protein D [Vibrio furnissii
           NCTC 11218]
          Length = 164

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           ++    V     + + + +  +   + F+ L++ Q+++QDP  P   ++ V QLA F+Q+
Sbjct: 10  VDTRVTVQSASTKTTTNANSTSSLYNEFITLMVAQVQNQDPLNPTDGTQYVTQLAQFAQV 69

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVD 117
           + +  M S L     ++ +  +   +  +G++++    ++         +  G   +T  
Sbjct: 70  QSTDNMVSILNNNAIMMDNLQVLTTAGLVGQSVSVRTDTLHADGEG---TYNGSIELTSS 126

Query: 118 NTEIPITTGIRISN 131
           +  + +       N
Sbjct: 127 SNTVTLELVDEAGN 140


>gi|23011250|ref|ZP_00051667.1| COG1843: Flagellar hook capping protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 223

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN---LA 80
               FL LL TQ+K+Q+P +P+  ++   QL  F+ +EQ ++ N++L  +L ++     +
Sbjct: 28  NFTQFLTLLTTQLKNQNPLDPLDTNQFTQQLVQFAGVEQQLKTNASLDTILTNSKASAAS 87

Query: 81  QASSYIGKNITNADGSI 97
            AS  IG+ +     + 
Sbjct: 88  SASGLIGRTVVADGATT 104


>gi|34498341|ref|NP_902556.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
           ATCC 12472]
 gi|34104195|gb|AAQ60554.1| basal-body rod modification protein FlgD [Chromobacterium violaceum
           ATCC 12472]
          Length = 224

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N      + S +     Q+ FL LL  Q+  QDP  PM  S+  +Q+A  SQ+     
Sbjct: 10  AANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQS 69

Query: 66  MNSTLQELLKSNNLAQAS---SYIGKNITNADGSI 97
           +N T+Q+L+ S N +Q+      IG N+  A  ++
Sbjct: 70  LNLTMQQLVASQNASQSMMATGMIGNNVLVAGNTL 104


>gi|21672603|ref|NP_660670.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
 gi|25008457|sp|Q8K9K7|FLGD_BUCAP RecName: Full=Basal-body rod modification protein flgD
 gi|21623234|gb|AAM67881.1| basal-body rod modification protein FlgD [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 226

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST---LQELLKSNNLAQ 81
           Q  FL LL+ Q+K+QDPT+P+K SE  +QLA  +      ++NST       +  +   Q
Sbjct: 32  QKNFLSLLMAQMKNQDPTDPIKNSELTSQLAQINTATGIERLNSTVGIFSNKINQSQNIQ 91

Query: 82  ASSYIGKNITNADGSI 97
            SS IG ++      I
Sbjct: 92  VSSLIGHHVMIPSSQI 107


>gi|312962589|ref|ZP_07777079.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
          WH6]
 gi|311283169|gb|EFQ61760.1| basal-body rod modification protein FlgD [Pseudomonas fluorescens
          WH6]
          Length = 241

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
          T+ +        +   ++LG+DAFL+LL+TQ+K+Q+P  P      VAQLA FS +E   
Sbjct: 24 TDNSSLGDASKAATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83

Query: 65 QMNS 68
           +N 
Sbjct: 84 TLND 87


>gi|89092135|ref|ZP_01165090.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
           MED92]
 gi|89083870|gb|EAR63087.1| basal-body rod modification protein FlgD [Oceanospirillum sp.
           MED92]
          Length = 235

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
              N T+   S S S+     D F++L+I Q+++QDPT P   ++ + Q+A  SQ+E   
Sbjct: 16  NTQNQTKSTQSSSTSQSQEDSDMFMRLMIAQLQNQDPTSPADTNDFMQQIATMSQVESIN 75

Query: 65  QMNSTL----QELLKSNNLAQASSYIGKNITNADGS 96
            +  T+    Q +L S    QASS +G+++  A  +
Sbjct: 76  NLTQTVQSTSQSMLASQAALQASSMVGQSVYIAGDT 111


>gi|322832563|ref|YP_004212590.1| flagellar hook capping protein [Rahnella sp. Y9602]
 gi|321167764|gb|ADW73463.1| flagellar hook capping protein [Rahnella sp. Y9602]
          Length = 234

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQ-----------DAFLKLLITQIKHQDPTEPMKASE 49
           M I T +N T    + + +                  +FL LL+ Q+K+QDPT PM  S+
Sbjct: 1   MAITTSINDTTDNTTIASTSSGGSSTTGTSSADDLSSSFLTLLVAQLKNQDPTNPMDNSQ 60

Query: 50  QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNAIQV 106
             +QLA  S +    ++N+TL  +   + S +  QASS IG  +  +  +I  +V +   
Sbjct: 61  LTSQLAQISTVSGIEKLNTTLGSISGQITSGSSVQASSLIGHGVMVSGSAI--LVGSDTD 118

Query: 107 SSTGLTAITVDNTEIPITTGIRISN 131
            +   T    +      TT   +S+
Sbjct: 119 GTVSTTPFGFELETASDTTTATVSD 143


>gi|307719962|ref|YP_003891102.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306978055|gb|ADN08090.1| flagellar hook capping protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 220

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
            K  LG+D F+KLL+ Q+++QDPTEPM   + + Q +  + +E +    + L++L  S  
Sbjct: 23  PKGVLGKDDFMKLLLVQLQYQDPTEPMDTEKILTQTSQLASLESADNTKTALEKLAASLG 82

Query: 79  LAQA---SSYIGKNITNADGSI 97
            AQ     S IGK       +I
Sbjct: 83  NAQQFSTISAIGKTADLGSDAI 104


>gi|224825163|ref|ZP_03698269.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
 gi|224602834|gb|EEG09011.1| flagellar hook capping protein [Lutiella nitroferrum 2002]
          Length = 230

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
               +    S S S     Q+ FL LL TQ+K QDP  PM+ +E  +Q+A  SQ+     
Sbjct: 15  NTGNSTSSSSVSASSAEGIQNRFLTLLTTQLKSQDPLNPMENNEITSQMAQISQVTGLEN 74

Query: 66  MNSTLQELLKSN---NLAQASSYIGKNITNADGSIS 98
           ++ ++  LL+S        A+S +GK+      +++
Sbjct: 75  LSKSINSLLQSQYGTQSLLAASLVGKSAMIDGNTLT 110


>gi|261341495|ref|ZP_05969353.1| putative basal-body rod modification protein FlgD [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316291|gb|EFC55229.1| putative basal-body rod modification protein FlgD [Enterobacter
           cancerogenus ATCC 35316]
          Length = 234

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +     T    + + +      + F+KLL+ QI++QDP  P   +E V QLA  +Q++  
Sbjct: 11  SDTATTTDSGIAPNDNSAAGMTNLFMKLLVAQIQNQDPLNPTDGTEYVGQLAQLTQVQSM 70

Query: 64  VQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
             M   +Q    L+ +       + +G+ +     ++ 
Sbjct: 71  ENMTVGMQNIGVLMDNLQTLSTGNLVGQKVMVQTDTLQ 108


>gi|115353119|ref|YP_774958.1| flagellar basal body rod modification protein [Burkholderia
           ambifaria AMMD]
 gi|115283107|gb|ABI88624.1| flagellar hook capping protein [Burkholderia ambifaria AMMD]
          Length = 248

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            + T+   T    +   S   L Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + + 
Sbjct: 17  NLPTDTMNTSNVSTTGTSASDL-QATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVS 75

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
              Q+N++L  L   L +    QA+  IG N+      +
Sbjct: 76  GIAQLNTSLTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114


>gi|325529013|gb|EGD06026.1| flagellar basal body rod modification protein [Burkholderia sp.
          TJI49]
          Length = 229

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10 TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
               S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 2  NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 61

Query: 70 LQEL---LKSNNLAQASSYIGKNITNADGSI 97
          L  L   L +    QA+  IG N+     ++
Sbjct: 62 LTSLSTQLAAGQQTQAALLIGSNVLAPGNTV 92


>gi|218886712|ref|YP_002436033.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757666|gb|ACL08565.1| flagellar hook capping protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 222

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
             DAFL+LLI ++++QDPT P   +E + Q+A FS +EQ   +N T   +   L + +L 
Sbjct: 24  DSDAFLQLLIAELQNQDPTNPTDNTEMINQIASFSTVEQLSALNDTATSIYDSLTAMSLN 83

Query: 81  QASSYIGKNITNADGSIS 98
            A S+IG+++      IS
Sbjct: 84  SAVSFIGQSVLAQGDDIS 101


>gi|32477562|ref|NP_870556.1| basal-body rod modification protein FlgD [Rhodopirellula baltica SH
           1]
 gi|32448116|emb|CAD77633.1| probable basal-body rod modification protein FlgD [Rhodopirellula
           baltica SH 1]
          Length = 164

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            +     Q   S ++   +L  D+FLKLLI ++++QDP +P+  ++ V Q+    ++  +
Sbjct: 28  TSSERSAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGAT 87

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSST 109
            Q+ +TL +L  S  L  AS  IG+ ++       + +GVV+ I V + 
Sbjct: 88  DQLTNTLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 136


>gi|172061973|ref|YP_001809625.1| flagellar basal body rod modification protein [Burkholderia
           ambifaria MC40-6]
 gi|171994490|gb|ACB65409.1| flagellar hook capping protein [Burkholderia ambifaria MC40-6]
          Length = 248

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
             +  S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+      +
Sbjct: 84  LTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114


>gi|327543122|gb|EGF29558.1| flagellar hook capping protein [Rhodopirellula baltica WH47]
          Length = 153

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
            +     Q   S ++   +L  D+FLKLLI ++++QDP +P+  ++ V Q+    ++  +
Sbjct: 17  TSSERSAQISESANEGYNSLDVDSFLKLLINELQNQDPLDPVDNAQMVQQIGQIREIGAT 76

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITN---ADGSISGVVNAIQVSST 109
            Q+ +TL +L  S  L  AS  IG+ ++       + +GVV+ I V + 
Sbjct: 77  DQLTNTLSDLSNSQQLVTASGLIGRTVSGLADDQSNTTGVVDKITVETN 125


>gi|170737037|ref|YP_001778297.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
 gi|169819225|gb|ACA93807.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
          Length = 241

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDA-FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
            +N          + +         A F +LL+ Q+K+QDP  PM+A++ V Q A  SQ+
Sbjct: 6   NVNNVTGVGGSVATPTAGNGEGDVSAMFTRLLVAQVKNQDPLAPMEANQFVTQFAQMSQV 65

Query: 61  EQSVQMNSTLQELLKSNNLAQASSY---IGKNITNADGSIS 98
           E    + +      ++       +    +G  +      + 
Sbjct: 66  EAMRTLANLSAATARTQESMLVVTLGSQVGSQVRVRSEKVE 106


>gi|91785635|ref|YP_560841.1| flagellar basal body rod modification protein [Burkholderia
           xenovorans LB400]
 gi|91689589|gb|ABE32789.1| putative flagellar hook capping protein [Burkholderia xenovorans
           LB400]
          Length = 240

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+  + T    S S +  T  Q+ FL+LL+ Q+K+QDPT PM +S+  +QLA  + +   
Sbjct: 26  NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85

Query: 64  VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98
            Q+N+TL  L    +  Q S     IG  +     S+S
Sbjct: 86  SQLNTTLTSLATQMSAGQQSQAALLIGSTVLAPGSSVS 123


>gi|188534171|ref|YP_001907968.1| flagellar basal body rod modification protein [Erwinia tasmaniensis
           Et1/99]
 gi|188029213|emb|CAO97085.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
           tasmaniensis Et1/99]
          Length = 223

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q  FL LL+TQ+K+QDPT PM  S+   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 31  QGNFLTLLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGVEKLNTTLGSISGQITSGQSLQ 90

Query: 82  ASSYIGKNITNADGSI 97
           AS+ IG  +      I
Sbjct: 91  ASTLIGHGVMVNGSQI 106


>gi|126454100|ref|YP_001064563.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 1106a]
 gi|134283615|ref|ZP_01770314.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
 gi|167717659|ref|ZP_02400895.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei DM98]
 gi|242315536|ref|ZP_04814552.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
 gi|126227742|gb|ABN91282.1| flagellar hook capping protein [Burkholderia pseudomallei 1106a]
 gi|134245024|gb|EBA45119.1| flagellar hook capping protein [Burkholderia pseudomallei 305]
 gi|242138775|gb|EES25177.1| flagellar hook capping protein [Burkholderia pseudomallei 1106b]
          Length = 280

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 48  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144


>gi|254182141|ref|ZP_04888738.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
 gi|184212679|gb|EDU09722.1| flagellar hook capping protein [Burkholderia pseudomallei 1655]
          Length = 280

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 48  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144


>gi|118581833|ref|YP_903083.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
 gi|118504543|gb|ABL01026.1| flagellar hook capping protein [Pelobacter propionicus DSM 2379]
          Length = 220

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 18  KSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN 77
           KS   +    FL+L I Q+++QDP  P  A+  + QL+  S +EQS    + L  LL + 
Sbjct: 19  KSSLGMDSSDFLQLFIAQMQYQDPLAPTDATAMMNQLSQLSLVEQSYNQTTALSNLLAAQ 78

Query: 78  N---LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
           N      + S+IGK +      I           T   ++  + +     T + IS+
Sbjct: 79  NNSLSMGSVSFIGKTVKANGDDIV-------FDGTSSPSLQYNLSSASAATTLTISD 128


>gi|254255086|ref|ZP_04948403.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
 gi|124899731|gb|EAY71574.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
          Length = 220

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M+              +     L    F  LLI QI++QDP  PM AS+ V Q A  SQ+
Sbjct: 13 MDAGGPGVLPPGGAQPNDGPSNL----FTTLLIAQIRNQDPLAPMDASQFVNQFAQMSQV 68

Query: 61 EQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
          E    + + L  L      +     +G  +
Sbjct: 69 EAMQTL-ANLTALTAGMQESTLVVTLGAQV 97


>gi|170703095|ref|ZP_02893915.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
 gi|170131992|gb|EDT00500.1| flagellar hook capping protein [Burkholderia ambifaria IOP40-10]
          Length = 248

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
             +  S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTRNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+      +
Sbjct: 84  LTSLSSQLAAGQQTQAALLIGTNVLAPGNGV 114


>gi|118475635|ref|YP_891219.1| flagellar basal body rod modification protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414861|gb|ABK83281.1| flagellar hook assembly protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 263

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                + +     L +DAFLKLL+ ++++QDPTEPM +++ + Q +  + +E     N  
Sbjct: 32  NNASGTGTNPYSQLDKDAFLKLLLVELQYQDPTEPMDSAKMLEQTSQLATLEMQENTNKV 91

Query: 70  LQELLKSNN---LAQASSYIGK 88
           +++L           A S +GK
Sbjct: 92  MKQLTTQMQSSLSMTAMSALGK 113


>gi|254251190|ref|ZP_04944508.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
 gi|124893799|gb|EAY67679.1| Flagellar hook capping protein [Burkholderia dolosa AUO158]
          Length = 245

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTNNVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+      +
Sbjct: 84  LTSLSTQLAAGQQTQAALLIGSNVLAPGNGV 114


>gi|326796598|ref|YP_004314418.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
 gi|326547362|gb|ADZ92582.1| flagellar hook capping protein [Marinomonas mediterranea MMB-1]
          Length = 236

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLA 80
            ++ F++L I Q+K+QDPT P +  + V+Q+A FS +EQ   M+ST+  +   L S+   
Sbjct: 44  DKNVFMELYIAQLKNQDPTAPQETGDMVSQMAEFSSLEQLTDMSSTMTSMSEALVSSQAL 103

Query: 81  QASSYIGKNITNADGSIS 98
            AS+ +GK++     +IS
Sbjct: 104 TASTLVGKSVYVDQDTIS 121


>gi|229592131|ref|YP_002874250.1| flagellar basal body rod modification protein [Pseudomonas
          fluorescens SBW25]
 gi|229363997|emb|CAY51547.1| flagellar biosynthesis, initiation of hook assembly [Pseudomonas
          fluorescens SBW25]
          Length = 241

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
          T+ +        +   ++LG+DAFL+LL+TQ+K+Q+P  P      VAQLA FS +E   
Sbjct: 24 TDNSSVGDAAKSATGNQSLGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGIN 83

Query: 65 QMNS 68
           +N 
Sbjct: 84 TLND 87


>gi|317152825|ref|YP_004120873.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943076|gb|ADU62127.1| flagellar hook capping protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 225

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 3/97 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           + +  + +    S +  +LG   FL LLITQ+++QDPTEP+  +E V Q+  FSQ+E   
Sbjct: 11  SLLTASSETADTSTASTSLGSMDFLNLLITQLQYQDPTEPVDNTEMVNQMTQFSQLESLT 70

Query: 65  QMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
            +   L E    L +++   A SY+GK +  +  S+S
Sbjct: 71  SIEDKLDELTSSLSASSTTSAISYLGKEVEASGYSLS 107


>gi|186477696|ref|YP_001859166.1| flagellar basal body rod modification protein [Burkholderia
           phymatum STM815]
 gi|184194155|gb|ACC72120.1| flagellar hook capping protein [Burkholderia phymatum STM815]
          Length = 237

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   + +    S S +  +  Q+ FL+LLI Q+K+QDPT PM +S+  +QLA  + +  
Sbjct: 22  MNGAKSASSSSSSSSATSGSDLQNTFLQLLIAQMKNQDPTSPMDSSQMTSQLAQINTVTG 81

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
             Q+NS+L  L   L +N   QA++ I   +     S S
Sbjct: 82  IGQLNSSLTSLASQLTTNQQTQAANLINSTVLAPGDSFS 120


>gi|439980|gb|AAA73466.1| unknown [Treponema phagedenis]
          Length = 97

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 44  PMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI--SGVV 101
           PM+ ++ VAQ+A F+ +EQ   ++ + ++L    + ++A + +GK +   DGSI  SGV+
Sbjct: 3   PMEDTQFVAQMAQFTSLEQMTNVSQSFEKLNNLLSGSEAVNAVGKQVNIEDGSIKVSGVI 62

Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRIS 130
            A   +   +  + VD      +T   + 
Sbjct: 63  TA--ATRGEIPQVQVDGKWYDWSTVKTVY 89


>gi|237810460|ref|YP_002894911.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei MSHR346]
 gi|237503425|gb|ACQ95743.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei MSHR346]
          Length = 280

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 48  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTL 144


>gi|308186392|ref|YP_003930523.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
 gi|308056902|gb|ADO09074.1| Basal-body rod modification protein flgD [Pantoea vagans C9-1]
          Length = 224

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL +L+TQ+K+QDPT PM  S+   QLA  + +    ++N+TL  +   + ++   Q
Sbjct: 32  QNQFLTMLVTQLKNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 91

Query: 82  ASSYIGKNITNADGSI 97
           +S+ IG  +    G I
Sbjct: 92  SSTLIGHGVMVNGGQI 107


>gi|206558967|ref|YP_002229727.1| flagellar basal body rod modification protein [Burkholderia
           cenocepacia J2315]
 gi|198035004|emb|CAR50876.1| basal-body rod modification protein FlgD [Burkholderia cenocepacia
           J2315]
          Length = 234

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T+   T    S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    
Sbjct: 6   TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 65

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           Q+N++L  L   L +    QA+  IG N+     S+
Sbjct: 66  QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 101


>gi|114569240|ref|YP_755920.1| flagellar hook capping protein [Maricaulis maris MCS10]
 gi|114339702|gb|ABI64982.1| flagellar hook capping protein [Maricaulis maris MCS10]
          Length = 221

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          ++  + +  T    + S++      + FL LL  Q+K+QDP  P+ +++ V QL  FS +
Sbjct: 2  VDAVSGLGATSPSLANSQTGLADNFEMFLTLLTEQMKNQDPLNPLDSTQFVNQLVDFSSV 61

Query: 61 EQSV 64
          EQ +
Sbjct: 62 EQQI 65


>gi|295678059|ref|YP_003606583.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
 gi|295437902|gb|ADG17072.1| flagellar hook capping protein [Burkholderia sp. CCGE1002]
          Length = 235

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL+LL+ Q+K+QDPT PM +S+  +QLA  S ++    +N++L  L   L ++  AQ
Sbjct: 42  QNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQISTVQGISNLNTSLTSLSTQLSASQQAQ 101

Query: 82  ASSYIGKNITNADGSIS 98
           ++  IG  +     S++
Sbjct: 102 SALLIGSTVLAPGNSVT 118


>gi|171321837|ref|ZP_02910738.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
 gi|171092875|gb|EDT38127.1| flagellar hook capping protein [Burkholderia ambifaria MEX-5]
          Length = 248

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
              + S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+      +
Sbjct: 84  LTSLSTQLAAGQQTQAALLIGTNVLAPGNGV 114


>gi|300716217|ref|YP_003741020.1| flagellar biosynthesis, initiation of hook assembly [Erwinia
           billingiae Eb661]
 gi|299062053|emb|CAX59169.1| Flagellar biosynthesis, initiation of hook assembly [Erwinia
           billingiae Eb661]
          Length = 223

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q  FL LL+TQ+++QDPT PM  S+   QLA  + +    ++N+TL  +   + S    Q
Sbjct: 31  QSNFLTLLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQINSGQSLQ 90

Query: 82  ASSYIGKNITNADGSI 97
           A++ IG  +      +
Sbjct: 91  ATTLIGHGVMVDGTQV 106


>gi|296157457|ref|ZP_06840292.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
 gi|295892229|gb|EFG72012.1| flagellar hook capping protein [Burkholderia sp. Ch1-1]
          Length = 240

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+  + T    S S +  T  Q+ FL+LL+ Q+K+QDPT PM +S+  +QLA  + +   
Sbjct: 26  NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85

Query: 64  VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSIS 98
            Q+N+TL  L    +  Q S     IG  +     S+S
Sbjct: 86  SQLNTTLTSLATQMSAGQQSQAALLIGSTVLAPGSSVS 123


>gi|157738167|ref|YP_001490851.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
 gi|315636310|ref|ZP_07891560.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
 gi|157700021|gb|ABV68181.1| flagellar hook assembly protein FlgD [Arcobacter butzleri RM4018]
 gi|315479399|gb|EFU70082.1| flagellar hook assembly protein FlgD [Arcobacter butzleri JV22]
          Length = 226

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME---QSV 64
           + +   ++ S S  +L  + FLKL+I Q+K QDPT+P  +++ +      S +    Q +
Sbjct: 12  DASGNTYTTSVSNDSLTTNDFLKLMIEQLKLQDPTKPYDSAKMLETQMQMSTLNANMQMI 71

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNA--IQVSSTGLTAITVDNTEI 121
               ++    +  +++ A+  IG +I N   + SG + +  ++       ++ V   E+
Sbjct: 72  STLESISTAFQQTSISNAAGLIGSSIENGSKNSSGSLKSYYVESIENVDGSLIVKGREL 130


>gi|83593868|ref|YP_427620.1| flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576782|gb|ABC23333.1| Flagellar hook capping protein [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
                  ++S SK       FL +L TQ+K+Q+P  P   +E   QL  +SQ+EQ +  N
Sbjct: 14  GKATSTSAESLSKLDENYKLFLTVLTTQLKNQNPLNPTDPNEMTQQLISYSQVEQQILGN 73

Query: 68  STLQELL---KSNNLAQASSYIGKNITNADGS 96
             L+ L+    +     A +++GK +     +
Sbjct: 74  QYLENLVLSTNNQTAETALAFVGKEVVYTSDN 105


>gi|315125983|ref|YP_004067986.1| LfgD [Pseudoalteromonas sp. SM9913]
 gi|315014497|gb|ADT67835.1| LfgD [Pseudoalteromonas sp. SM9913]
          Length = 217

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 1   MEINTEVNPTQQEFSKSK-----SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA 55
           M++N+ V         +      S        FL+LL+ QI +Q+P +PM  ++ V+QLA
Sbjct: 1   MQVNSAVPSAADATKNTTNIAGNSSADEMSTMFLELLVAQISNQNPLQPMDGTQYVSQLA 60

Query: 56  VFSQMEQSVQMNSTLQ---ELLKSNNLAQASSYIGKNITN--------ADGSISGVVNAI 104
            FS +E    +        + + S  + +A++ +G+ +           DGS+SG+VN  
Sbjct: 61  EFSNVESLQSIRQNTADGLDYVSSLAVLEATNMVGQTVDVQASSIALEQDGSVSGMVNLG 120

Query: 105 QVSSTGLTAITVDNTEI 121
           + + +    +   + E+
Sbjct: 121 EAADSVTVQLYNQDGEL 137


>gi|187925762|ref|YP_001897404.1| flagellar basal body rod modification protein [Burkholderia
           phytofirmans PsJN]
 gi|187716956|gb|ACD18180.1| flagellar hook capping protein [Burkholderia phytofirmans PsJN]
          Length = 240

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N+  + T    S S +  T  Q+ FL+LL+ Q+K+QDPT PM +S+  +QLA  + +   
Sbjct: 26  NSASSSTSSTGSTSGTSATDLQNTFLQLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGI 85

Query: 64  VQMNSTLQELLKSNNLAQASS---YIGKNITNADGSI 97
            Q+N+TL  L    +  Q S     IG  +     S+
Sbjct: 86  SQLNTTLSSLATQMSAGQQSQAALLIGSTVLAPGSSV 122


>gi|167568106|ref|ZP_02361022.1| flagellar basal body rod modification protein [Burkholderia
           oklahomensis EO147]
          Length = 282

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q  FLKLL+TQ+++QDPT P+ +++  +QLA  + +    Q+N++L  L   L +    Q
Sbjct: 71  QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130

Query: 82  ASSYIGKNITNADGSI 97
           A+  IG N+     ++
Sbjct: 131 AAMLIGSNVLAPGNTV 146


>gi|167574224|ref|ZP_02367098.1| flagellar basal body rod modification protein [Burkholderia
           oklahomensis C6786]
          Length = 282

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q  FLKLL+TQ+++QDPT P+ +++  +QLA  + +    Q+N++L  L   L +    Q
Sbjct: 71  QTTFLKLLVTQLQNQDPTSPVDSAQMTSQLAQINTVSGIAQLNTSLTSLSSQLTAGQQTQ 130

Query: 82  ASSYIGKNITNADGSI 97
           A+  IG N+     ++
Sbjct: 131 AAMLIGSNVLAPGNTV 146


>gi|52427987|gb|AAU48580.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
           23344]
          Length = 255

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 26  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 85

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 86  AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 122


>gi|67641537|ref|ZP_00440314.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
           horse 4]
 gi|121598638|ref|YP_994290.1| flagellar basal body rod modification protein [Burkholderia mallei
           SAVP1]
 gi|124386481|ref|YP_001028061.1| flagellar basal body rod modification protein [Burkholderia mallei
           NCTC 10229]
 gi|126451230|ref|YP_001082868.1| flagellar basal body rod modification protein [Burkholderia mallei
           NCTC 10247]
 gi|161579514|ref|YP_104797.2| flagellar basal body rod modification protein [Burkholderia mallei
           ATCC 23344]
 gi|167001536|ref|ZP_02267331.1| basal-body rod modification protein FlgD [Burkholderia mallei
           PRL-20]
 gi|254175221|ref|ZP_04881882.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
           10399]
 gi|254201895|ref|ZP_04908259.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
 gi|254207229|ref|ZP_04913580.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
 gi|254359731|ref|ZP_04976002.1| basal-body rod modification protein FlgD [Burkholderia mallei
           2002721280]
 gi|121227448|gb|ABM49966.1| basal-body rod modification protein FlgD [Burkholderia mallei
           SAVP1]
 gi|124294501|gb|ABN03770.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
           10229]
 gi|126244100|gb|ABO07193.1| basal-body rod modification protein FlgD [Burkholderia mallei NCTC
           10247]
 gi|147747789|gb|EDK54865.1| basal-body rod modification protein FlgD [Burkholderia mallei FMH]
 gi|147752771|gb|EDK59837.1| basal-body rod modification protein FlgD [Burkholderia mallei JHU]
 gi|148028945|gb|EDK86877.1| basal-body rod modification protein FlgD [Burkholderia mallei
           2002721280]
 gi|160696266|gb|EDP86236.1| basal-body rod modification protein FlgD [Burkholderia mallei ATCC
           10399]
 gi|238522488|gb|EEP85932.1| basal-body rod modification protein FlgD [Burkholderia mallei GB8
           horse 4]
 gi|243062737|gb|EES44923.1| basal-body rod modification protein FlgD [Burkholderia mallei
           PRL-20]
          Length = 277

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 48  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144


>gi|221199738|ref|ZP_03572781.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD2M]
 gi|221208657|ref|ZP_03581657.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD2]
 gi|221215570|ref|ZP_03588533.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD1]
 gi|221164558|gb|EED97041.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD1]
 gi|221171468|gb|EEE03915.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD2]
 gi|221179977|gb|EEE12381.1| basal-body rod modification protein FlgD [Burkholderia multivorans
           CGD2M]
          Length = 247

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+     ++
Sbjct: 84  LTSLSTQLAAGQQTQAALLIGSNVLAPGDTV 114


>gi|242238968|ref|YP_002987149.1| flagellar hook capping protein [Dickeya dadantii Ech703]
 gi|242131025|gb|ACS85327.1| flagellar hook capping protein [Dickeya dadantii Ech703]
          Length = 225

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ F+ LL+ Q+++QDPT+PM  S+   QLA  S +    ++N+TL  +   L +N + Q
Sbjct: 31  QNEFMTLLVAQLQNQDPTDPMDNSQLTTQLAQISMLSGIEEINTTLGSITSQLDTNEMLQ 90

Query: 82  ASSYIGKNITNADGSIS 98
           AS+ IG  +     SI+
Sbjct: 91  ASTLIGNGVLIEGNSIT 107


>gi|328958278|ref|YP_004375664.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4]
 gi|328674602|gb|AEB30648.1| putative flagellar hook assembly protein [Carnobacterium sp. 17-4]
          Length = 142

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 11/141 (7%)

Query: 1   MEINTE-VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDP------TEPMKASEQVAQ 53
           ME +T+ +  +    S  K+   L  + FL+++   IK                ++ +AQ
Sbjct: 1   MEFSTDYMMGSVNNTSTRKTGTELSTEDFLQIMAASIKMPSMPGEGGSGGGGGETDYLAQ 60

Query: 54  LAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNAD---GSISGVVNAIQVSSTG 110
           LA F+ ++Q   ++ TL   +      QA S + K +  A    G +SG V+ ++    G
Sbjct: 61  LAQFNTLDQLTTVSETLNLNVLMTQQQQALSLLNKEVKVAGADSGFVSGTVDKVKFDQ-G 119

Query: 111 LTAITVDNTEIPITTGIRISN 131
              I VD  +  +   + + +
Sbjct: 120 YATIQVDGKDYTLNDILEVGD 140


>gi|170751442|ref|YP_001757702.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170657964|gb|ACB27019.1| flagellar hook capping protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 228

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL-- 74
           + ++       FL LL TQ+K+Q+P +PM  ++   QL  F+ +EQ ++ N  L  +L  
Sbjct: 24  NATEIASNFTQFLTLLTTQLKNQNPLDPMDTNQFTQQLVQFAGVEQQLKTNDRLDSILSA 83

Query: 75  -KSNNLAQASSYIGKNITN-------ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTG 126
            +S + A A+SYIGK ++        + GS S  +N  + +S  +  +      +  T  
Sbjct: 84  SQSASSASATSYIGKTVSADGSASQLSGGSASWTLNPARAASKAVITVLDSKNNVVATQT 143

Query: 127 IRIS 130
             +S
Sbjct: 144 TALS 147


>gi|307731364|ref|YP_003908588.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
 gi|307585899|gb|ADN59297.1| flagellar hook capping protein [Burkholderia sp. CCGE1003]
          Length = 240

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ FL LL+ Q+K+QDPT PM +S+  +QLA  + +    Q+N+TL  L    +  Q S 
Sbjct: 47  QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 106

Query: 85  ---YIGKNITNADGSIS 98
               IG  +     S+S
Sbjct: 107 AALLIGSTVLAPGSSVS 123


>gi|161526187|ref|YP_001581199.1| flagellar basal body rod modification protein [Burkholderia
           multivorans ATCC 17616]
 gi|189349097|ref|YP_001944725.1| flagellar basal body rod modification protein [Burkholderia
           multivorans ATCC 17616]
 gi|160343616|gb|ABX16702.1| flagellar hook capping protein [Burkholderia multivorans ATCC
           17616]
 gi|189333119|dbj|BAG42189.1| flagellar basal-body rod modification protein [Burkholderia
           multivorans ATCC 17616]
          Length = 247

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
                S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTNNVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+     ++
Sbjct: 84  LTSLSTQLAAGQQTQAALLIGSNVLAPGNTV 114


>gi|126440236|ref|YP_001057321.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 668]
 gi|162210025|ref|YP_331877.2| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 1710b]
 gi|167736702|ref|ZP_02409476.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 14]
 gi|167822317|ref|ZP_02453788.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 9]
 gi|167843907|ref|ZP_02469415.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei B7210]
 gi|167892409|ref|ZP_02479811.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 7894]
 gi|167900907|ref|ZP_02488112.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909126|ref|ZP_02496217.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 112]
 gi|167917163|ref|ZP_02504254.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei BCC215]
 gi|217425024|ref|ZP_03456520.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
 gi|226199857|ref|ZP_03795408.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254188071|ref|ZP_04894583.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196785|ref|ZP_04903209.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
 gi|254259219|ref|ZP_04950273.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
 gi|254295813|ref|ZP_04963270.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
 gi|126219729|gb|ABN83235.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
 gi|157805801|gb|EDO82971.1| flagellar hook capping protein [Burkholderia pseudomallei 406e]
 gi|157935751|gb|EDO91421.1| flagellar hook capping protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653528|gb|EDS86221.1| flagellar hook capping protein [Burkholderia pseudomallei S13]
 gi|217392044|gb|EEC32070.1| flagellar hook capping protein [Burkholderia pseudomallei 576]
 gi|225928208|gb|EEH24244.1| flagellar hook capping protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254217908|gb|EET07292.1| flagellar hook capping protein [Burkholderia pseudomallei 1710a]
          Length = 280

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 48  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 107

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 108 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 144


>gi|296282280|ref|ZP_06860278.1| flagellar hook capping protein [Citromicrobium bathyomarinum
          JL354]
          Length = 102

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 44/76 (57%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
          T  +      ++ ++   LGQ  FL+LL  Q++ QDP EP+   E +AQ+A FS +  + 
Sbjct: 11 TSASSKPNTNTQGRTMDQLGQADFLRLLTVQMQQQDPFEPVDNKEMLAQMAQFSSLAGTA 70

Query: 65 QMNSTLQELLKSNNLA 80
          + N+TL+++++  +  
Sbjct: 71 ETNTTLEKIVEKLDAL 86


>gi|107023954|ref|YP_622281.1| flagellar basal body rod modification protein [Burkholderia
           cenocepacia AU 1054]
 gi|116691041|ref|YP_836664.1| flagellar basal body rod modification protein [Burkholderia
           cenocepacia HI2424]
 gi|105894143|gb|ABF77308.1| flagellar hook capping protein [Burkholderia cenocepacia AU 1054]
 gi|116649130|gb|ABK09771.1| flagellar hook capping protein [Burkholderia cenocepacia HI2424]
          Length = 248

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T+   T    S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    
Sbjct: 20  TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           Q+N++L  L   L +    QA+  IG N+     S+
Sbjct: 80  QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 115


>gi|161723213|ref|YP_106899.2| flagellar basal body rod modification protein [Burkholderia
           pseudomallei K96243]
          Length = 283

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 51  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 110

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 111 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 147


>gi|167813801|ref|ZP_02445481.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 91]
          Length = 283

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 51  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 110

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 111 AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 147


>gi|52208327|emb|CAH34260.1| putative basal-body rod modification protein [Burkholderia
           pseudomallei K96243]
          Length = 261

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +   +      S S +     Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +   
Sbjct: 29  SGANSGINVASSLSTTSAADLQTTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGI 88

Query: 64  VQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
            Q+N+ L  L   L +    QA+  IG N+     ++
Sbjct: 89  AQLNTALTSLSSQLTAGQQTQAAMLIGSNVLAPGNTV 125


>gi|170694391|ref|ZP_02885545.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
 gi|170140814|gb|EDT08988.1| flagellar hook capping protein [Burkholderia graminis C4D1M]
          Length = 243

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ FL LL+ Q+K+QDPT PM +S+  +QLA  + +    Q+N+TL  L    +  Q S 
Sbjct: 50  QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109

Query: 85  ---YIGKNITNADGSIS 98
               IG  +     S+S
Sbjct: 110 AALLIGSTVLAPGSSVS 126


>gi|237752019|ref|ZP_04582499.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
          BAA-430]
 gi|229376586|gb|EEO26677.1| flagellar biosynthesis protein [Helicobacter winghamensis ATCC
          BAA-430]
          Length = 262

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
          ++L + Q+K+QDPT PM+  E + Q A  +Q+E   +M   ++++  +    Q ++
Sbjct: 1  MRLFLEQLKNQDPTAPMETQEILTQTAQLTQVEAQEKMKKAMEDMTTTMKSMQETN 56


>gi|78067838|ref|YP_370607.1| flagellar basal body rod modification protein [Burkholderia sp.
           383]
 gi|77968583|gb|ABB09963.1| Flagellar hook capping protein [Burkholderia sp. 383]
          Length = 251

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
              + S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N++
Sbjct: 24  NTNKVSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNTS 83

Query: 70  LQEL---LKSNNLAQASSYIGKNITNADGSI 97
           L  L   L +    QA+  IG N+     ++
Sbjct: 84  LTSLSTQLTAGQQTQAALLIGTNVLAPGNAV 114


>gi|291617019|ref|YP_003519761.1| FlgD [Pantoea ananatis LMG 20103]
 gi|291152049|gb|ADD76633.1| FlgD [Pantoea ananatis LMG 20103]
 gi|327393470|dbj|BAK10892.1| basal-body rod modification protein FlgD [Pantoea ananatis AJ13355]
          Length = 223

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQ 81
           Q+ FL +L+TQ+++QDPT PM  S+   QLA  + +    ++N+TL  +   + ++   Q
Sbjct: 31  QNQFLTMLVTQLQNQDPTNPMDNSQLTTQLAQINTLSGIEKLNTTLGSISGQISTSQSLQ 90

Query: 82  ASSYIGKNITNADGSI 97
           +S+ IG  +      I
Sbjct: 91  SSTLIGHGVMVNGSQI 106


>gi|323527714|ref|YP_004229867.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
 gi|323384716|gb|ADX56807.1| flagellar hook capping protein [Burkholderia sp. CCGE1001]
          Length = 243

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 25  QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           Q+ FL LL+ Q+K+QDPT PM +S+  +QLA  + +    Q+N+TL  L    +  Q S 
Sbjct: 50  QNTFLSLLVAQLKNQDPTNPMDSSQMTSQLAQINTVSGISQLNTTLSSLATQMSAGQQSQ 109

Query: 85  ---YIGKNITNADGSIS 98
               IG  +     SIS
Sbjct: 110 AALLIGSTVLAPGSSIS 126


>gi|238782791|ref|ZP_04626820.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
 gi|238716214|gb|EEQ08197.1| Flagellar hook capping protein [Yersinia bercovieri ATCC 43970]
          Length = 187

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 36  IKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASSYIGKNITN 92
           +++QDPT PM  ++  +QLA F+      Q+NSTL     L+ S     A+ ++G+N+  
Sbjct: 1   MQNQDPTNPMDNNQLTSQLAQFNTASGVQQLNSTLNSVGTLVTSMQQMNAAEWVGRNVWI 60

Query: 93  ADGSISGVVNAIQVSSTGLTAITVDNTEIPITT 125
              S+    +             VD   + +T 
Sbjct: 61  EGESVISFADDGNKEFAFAADTDVDKVTVTLTD 93


>gi|296274023|ref|YP_003656654.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
 gi|296098197|gb|ADG94147.1| flagellar hook capping protein [Arcobacter nitrofigilis DSM 7299]
          Length = 156

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 61/105 (58%), Gaps = 3/105 (2%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
           E+++  +   Q+++++ S   L  + FLKL++ Q+K QDPT+P  +   + Q    S ++
Sbjct: 5   EVSSVTDANGQQYTQAISNDKLTNEDFLKLMLEQMKQQDPTKPQDSQNMLNQQMQMSSIQ 64

Query: 62  QSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVVNA 103
            ++ M+++++ L    + ++L+ A++ I K +   +   +G++ +
Sbjct: 65  TNLDMSNSMKALQATFQQSSLSNATNLINKIVDTGEVDDNGILKS 109


>gi|54307269|ref|YP_128289.1| flagellar basal-body rod modification protein FlgD [Photobacterium
           profundum SS9]
 gi|46911689|emb|CAG18487.1| Hypothetical flagellar basal-body rod modification protein FlgD
           [Photobacterium profundum SS9]
          Length = 224

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 3   INTEVNPTQQEFSKSKSKKTLG--QDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +N   + + ++ S+  +   +    + FL +++ QI++Q+P EP   ++ + QL + S +
Sbjct: 9   VNQYSHGSTEQNSQQVAGNGMNPSSNQFLTMMVAQIQNQNPLEPADGTQFLTQLGMMSAV 68

Query: 61  EQSVQMNSTLQEL---LKSNNLAQASSYIGKNI---------TNADGSISGVVNAIQVSS 108
           E    + + +  +   + +  + QA++ +GK +          +    I G V   Q + 
Sbjct: 69  ESLEGVKTGMMNMNIGITNLEMLQATNLVGKKVLMEANQGVDVSEGQIIDGRVQFDQPAD 128

Query: 109 TGLTAITVDNTEI 121
           T    +  +  ++
Sbjct: 129 TAKVMVYDEEGKV 141


>gi|153953784|ref|YP_001394549.1| hypothetical protein CKL_1159 [Clostridium kluyveri DSM 555]
 gi|219854400|ref|YP_002471522.1| hypothetical protein CKR_1057 [Clostridium kluyveri NBRC 12016]
 gi|146346665|gb|EDK33201.1| FlgD [Clostridium kluyveri DSM 555]
 gi|219568124|dbj|BAH06108.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 265

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 2   EINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPT--EPMKASEQVAQLAVFSQ 59
           + +++      +  K  +   +  + FLK+L  ++++QDPT      ++E ++QLA FS 
Sbjct: 48  DKSSDTTENGTKIVKKNTGYDMDLNMFLKILCAELENQDPTDSSSQGSTEYISQLAQFSA 107

Query: 60  MEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
           ++Q + +N+T +    ++ + +  +   ++  +    I+G V  +      +    +  
Sbjct: 108 LQQMMNLNNTNKVTTANSLVNKYVTLSDRD--SEGNYITGKVVGVVKDGDDVELKLITG 164


>gi|170734375|ref|YP_001766322.1| flagellar basal body rod modification protein [Burkholderia
           cenocepacia MC0-3]
 gi|254246964|ref|ZP_04940285.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
 gi|124871740|gb|EAY63456.1| Flagellar hook capping protein [Burkholderia cenocepacia PC184]
 gi|169817617|gb|ACA92200.1| flagellar hook capping protein [Burkholderia cenocepacia MC0-3]
          Length = 248

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T+   T    S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    
Sbjct: 20  TDTMNTNNVSSTNGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIA 79

Query: 65  QMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           Q+N++L  L   L +    QA+  IG N+     S+
Sbjct: 80  QLNTSLTSLSTQLAAGQQTQAALLIGTNVLAPGNSV 115


>gi|262273530|ref|ZP_06051344.1| flagellar basal-body rod modification protein FlgD [Grimontia
           hollisae CIP 101886]
 gi|262222508|gb|EEY73819.1| flagellar basal-body rod modification protein FlgD [Grimontia
           hollisae CIP 101886]
          Length = 223

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
                  E     +      + FL +++ Q+++Q+P  P   ++ + QL + S +E    
Sbjct: 13  SHQAVASETQVGANGMNPSSNDFLTMMVAQVQNQNPLNPTDGTQYLTQLGMMSAVESLES 72

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNIT 91
           +   L  L   + +  + QA++ +GK + 
Sbjct: 73  VKVGLNNLNIGMTNVEMLQATNLVGKKVL 101


>gi|152990376|ref|YP_001356098.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2]
 gi|151422237|dbj|BAF69741.1| flagellar hook capping protein FlgD [Nitratiruptor sp. SB155-2]
          Length = 220

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           K+  +  + ++ FLK+L+   + QDP E    ++ +       ++E      +++  L  
Sbjct: 22  KNVDQSKMDKEGFLKVLLANFQFQDPFEAQDIAKFIDNTVKLRELEVLNNFETSVNTLAN 81

Query: 76  -SNNLAQASSYIGKNITNADGSI 97
            +  L  A++ IGK +       
Sbjct: 82  GTQQLLSAANLIGKKVVYTGNET 104


>gi|225850268|ref|YP_002730502.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
 gi|225645795|gb|ACO03981.1| flagellar hook capping protein FlgD [Persephonella marina EX-H1]
          Length = 215

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS---VQMNSTLQELLK 75
               +  + FLK+L+  ++ QDP +    ++ +       +ME      +    L+E  +
Sbjct: 22  DNSKMENEDFLKVLLADLQWQDPLQANDITDFIQNTVKLREMEVLNSFQETVELLKETNE 81

Query: 76  SNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGI 127
           +N+L  AS  IGK +             ++   + ++    DN +I   T +
Sbjct: 82  ANSLLYASGLIGKKVVYEGNQ-----TFVENGRSSVSFRLDDNADIVTVTVM 128


>gi|134297199|ref|YP_001120934.1| flagellar basal body rod modification protein [Burkholderia
           vietnamiensis G4]
 gi|134140356|gb|ABO56099.1| flagellar hook capping protein [Burkholderia vietnamiensis G4]
          Length = 248

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN-- 67
              + S + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+N  
Sbjct: 24  NTNKVSTTGTSASDLQATFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQLNSS 83

Query: 68  -STLQELLKSNNLAQASSYIGKNITNADGSIS 98
            S+L   L +    QA+  IG N+      +S
Sbjct: 84  LSSLSTQLAAGQQTQAALLIGTNVLAPGNDVS 115


>gi|148259133|ref|YP_001233260.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
 gi|326402286|ref|YP_004282367.1| putative flagellar hook capping protein [Acidiphilium multivorum
           AIU301]
 gi|146400814|gb|ABQ29341.1| flagellar hook capping protein [Acidiphilium cryptum JF-5]
 gi|325049147|dbj|BAJ79485.1| putative flagellar hook capping protein [Acidiphilium multivorum
           AIU301]
          Length = 253

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN--- 78
           +   + FL +L TQ+++QDPT PM +S+  ++L  FSQ+EQ +  N +L +LL+      
Sbjct: 60  SSNYNDFLTMLTTQLQNQDPTSPMSSSQFTSELVQFSQVEQQISTNQSLTQLLQLTQAGD 119

Query: 79  LAQASSYIGKNITNADGSI 97
           L QASS +G  +T     +
Sbjct: 120 LTQASSMLGSKVTATSSQL 138


>gi|167585193|ref|ZP_02377581.1| flagellar basal body rod modification protein [Burkholderia
           ubonensis Bu]
          Length = 250

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 6   EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
             N      + S +  +  Q  FLKLL+TQ+K+QDPT P+ +S+  +QLA  + +    Q
Sbjct: 24  NTNKVSTTGTLSTTSASDLQSTFLKLLVTQLKNQDPTSPVDSSQMTSQLAQINTVSGIAQ 83

Query: 66  MNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           +NS+L  L   L +    QA+  IG N+      +
Sbjct: 84  LNSSLTSLSTQLTAGQQTQAAMLIGTNVLAPGNGV 118


>gi|157147103|ref|YP_001454422.1| flagellar basal body rod modification protein [Citrobacter koseri
           ATCC BAA-895]
 gi|157084308|gb|ABV13986.1| hypothetical protein CKO_02880 [Citrobacter koseri ATCC BAA-895]
          Length = 227

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 28  FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE---LLKSNNLAQASS 84
           F++LL+ QI++QDP  P   +E V+QLA  +Q++    M+  +     L+ +       +
Sbjct: 35  FMQLLVAQIQNQDPLNPTDGTEYVSQLAQLTQVQSMETMSQLMANSSVLMDNLQTLTTGN 94

Query: 85  YIGKNITNADGSI 97
            +G+++     +I
Sbjct: 95  LVGQHVMVQTDAI 107


>gi|85710163|ref|ZP_01041228.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
 gi|85688873|gb|EAQ28877.1| Flagellar hook capping protein [Erythrobacter sp. NAP1]
          Length = 117

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 9  PTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
                 +  +  +L  + FL+L+  Q+ +QDP EP    + +AQLA FS +E      +
Sbjct: 20 NAPSTIRRESAAASLDSEDFLRLMTAQLANQDPLEPQSNEQMLAQLAQFSNLENGTASRA 79

Query: 69 TLQELLKSNNLA 80
          TL E+    +  
Sbjct: 80 TLDEISAKLDAL 91


>gi|238028850|ref|YP_002913081.1| flagellar basal body rod modification protein [Burkholderia glumae
           BGR1]
 gi|237878044|gb|ACR30377.1| Flagellar hook capping protein [Burkholderia glumae BGR1]
          Length = 258

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           V+        + +  +  Q  FLKLL+TQ+++QDPT P+ +S+  +QLA  + +    Q+
Sbjct: 20  VDTMSNNSGVASTSASDLQQTFLKLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSGIAQL 79

Query: 67  N---STLQELLKSNNLAQASSYIGKNITNADGSIS 98
           N   S+L   + +    QA+  IG N+     ++S
Sbjct: 80  NSSLSSLSSQITAGQQTQAALLIGSNVLAPGSTLS 114


>gi|103488386|ref|YP_617947.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
 gi|98978463|gb|ABF54614.1| flagellar hook capping protein [Sphingopyxis alaskensis RB2256]
          Length = 100

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
          M IN   N     F    + + +GQ  FL+L+  Q+  QDP  P+  +E VAQ+A FS +
Sbjct: 1  MSINGISNNNPV-FHSPGTSQQMGQSDFLRLMTAQLSQQDPFNPVDNTEMVAQMAQFSSL 59

Query: 61 EQSVQMNSTLQELLKSNNLAQA 82
              + N+ L ++ +       
Sbjct: 60 AGISETNTVLAQISEQLAAQTQ 81


>gi|327478808|gb|AEA82118.1| flagellar basal body rod modification protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 221

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q + + + S  T  ++ F+ L++ QIK+QDPT+P+ ++E + Q +V SQ++    M S  
Sbjct: 19  QVKRAVNVSDATTMENNFISLMVAQIKYQDPTKPVDSTEFLNQFSVMSQVKSMENMTSLA 78

Query: 71  QE---LLKSNNLAQASSYIGKNITNA 93
           Q    L+ +     A+  +G+ +  A
Sbjct: 79  QNNLVLMDNLQTLTAAGLVGQQVRVA 104


>gi|313681186|ref|YP_004058924.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154046|gb|ADR32724.1| flagellar hook capping protein [Sulfuricurvum kujiense DSM 16994]
          Length = 224

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 11/116 (9%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL--- 73
           ++ K +LG+D FLKLL+ ++K+QDPT PM + + ++Q +  + +E +   N  L+ L   
Sbjct: 24  NEDKSSLGKDDFLKLLLLELKYQDPTSPMDSEKILSQTSQLATLESTENTNKALETLAAS 83

Query: 74  LKSNNLAQASSYIGKN--------ITNADGSISGVVNAIQVSSTGLTAITVDNTEI 121
           L S+      S IGK         +   D S +  +   +  ++G   I     ++
Sbjct: 84  LTSSMQYSGISAIGKMADTGSNAIVKEKDTSATFEIYFPEKVASGKVNILDSAGKV 139


>gi|323341380|ref|ZP_08081624.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644]
 gi|323091257|gb|EFZ33885.1| flagellar hook assembly protein [Lactobacillus ruminis ATCC 25644]
          Length = 157

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 7   VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKA-----SEQVAQLAVFSQME 61
              +Q   +   +  T+  D FLK++ T + +   +    +     ++ ++Q+A FS ME
Sbjct: 26  AANSQTLKNIGNNNSTIKIDDFLKIISTAMSNPSLSGDSSSSGSSGTDYISQMAQFSTME 85

Query: 62  QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGS---ISGVVNAIQVSSTGLTAITVDN 118
              ++N T+   +  +   QA S IGK +   D      +G V  +     G   I+V+ 
Sbjct: 86  TLNELNKTVTTAMMISQQQQAFSLIGKTVDMVDEKNQPFTGKVERVSFK-NGFAQISVNG 144

Query: 119 TEIPITTGIRISN 131
               +++   +  
Sbjct: 145 KYYDMSSLSGVGE 157


>gi|209521588|ref|ZP_03270286.1| flagellar hook capping protein [Burkholderia sp. H160]
 gi|209497971|gb|EDZ98128.1| flagellar hook capping protein [Burkholderia sp. H160]
          Length = 237

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N   + +    S S +  +  Q+ FL+LL+ Q+K+QDPT PM +S+  +QLA  S ++ 
Sbjct: 22  MNGTSSSSSSTSSTSGTSASDLQNTFLQLLVAQMKNQDPTNPMDSSQMTSQLAQISTVQG 81

Query: 63  SVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSIS 98
              +N++L  L   L +   +QA+  IG  + ++  SI+
Sbjct: 82  ISNLNTSLSSLSTQLTAGQQSQAALLIGSTVLSSGNSIT 120


>gi|296135674|ref|YP_003642916.1| flagellar hook capping protein [Thiomonas intermedia K12]
 gi|295795796|gb|ADG30586.1| flagellar hook capping protein [Thiomonas intermedia K12]
          Length = 232

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
           + F  LL+TQ+ +QDP  PM  ++  AQLA FS       M  ++  L   L      QA
Sbjct: 38  NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97

Query: 83  SSYIGKNITNADGSIS 98
           ++ +G+ +   + SIS
Sbjct: 98  ANLVGQTVVFDNNSIS 113


>gi|39933721|ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas
           palustris CGA009]
 gi|39647568|emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas
           palustris CGA009]
          Length = 265

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL LLI+++++QDP      ++ + QL  ++   Q  ++NS++  L  S +      + 
Sbjct: 75  DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 134

Query: 84  SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           +YIG  +     + +    +     T   A +  +  I  ++G  +
Sbjct: 135 NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTV 180


>gi|294339844|emb|CAZ88207.1| putative Basal-body rod modification protein flgD [Thiomonas sp.
           3As]
          Length = 232

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQA 82
           + F  LL+TQ+ +QDP  PM  ++  AQLA FS       M  ++  L   L      QA
Sbjct: 38  NTFYTLLVTQLTNQDPMNPMSNTDLSAQLAQFSTASGIQSMQQSMATLTAQLAQTQGLQA 97

Query: 83  SSYIGKNITNADGSIS 98
           ++ +G+ +   + S+S
Sbjct: 98  ANLVGQTVVFDNNSLS 113


>gi|207110586|ref|ZP_03244748.1| flagellar basal body rod modification protein [Helicobacter
          pylori HPKX_438_CA4C1]
          Length = 95

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLK 75
           +     L ++AF+KL + Q+K+QDPT PM+  + + Q A  +Q+E   +   T+QE+  
Sbjct: 2  ATTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVAS 61

Query: 76 SN 77
          + 
Sbjct: 62 AM 63


>gi|255021353|ref|ZP_05293401.1| Flagellar basal-body rod modification protein FlgD
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969216|gb|EET26730.1| Flagellar basal-body rod modification protein FlgD
           [Acidithiobacillus caldus ATCC 51756]
          Length = 231

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQAS 83
            F  LL+TQ+ +QDP  P+   +  AQLA FS       + S+L  L+     N   QA+
Sbjct: 40  TFYNLLVTQLTNQDPLNPLSNQDLSAQLAQFSVANGVQAIQSSLTGLMSQINQNQGLQAA 99

Query: 84  SYIGKNITNADG 95
           S IGK++T +  
Sbjct: 100 SLIGKSVTTSGN 111


>gi|319790417|ref|YP_004152050.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1]
 gi|317114919|gb|ADU97409.1| flagellar hook capping protein [Thermovibrio ammonificans HB-1]
          Length = 218

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
               + ++ FLK+L+  ++ QDP +    S+ +       +ME      +++ +++ + N
Sbjct: 24  DNSKMSKEDFLKILLANLQWQDPLQAEDISQFIDDSVKLREMEALNDFENSVDKMVSTLN 83

Query: 79  LAQ---ASSYIGKNITNADGSI-----SGVVNAIQVSSTGLTAITV 116
                 AS +IGK I             G V+    S      + V
Sbjct: 84  SLSLFYASGFIGKLILYKGNQTYVENGKGYVSFTLPSDAASVTVEV 129


>gi|325295416|ref|YP_004281930.1| flagellar hook capping protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065864|gb|ADY73871.1| flagellar hook capping protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 219

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 19  SKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNN 78
               + Q+ FLK+L+  I+ QDP      SE +       ++E      S +Q  + +  
Sbjct: 26  DNSKMSQEDFLKVLLADIQWQDPLNAKDISEFINNAVKLQELEVLNSFESNIQTFVSTLQ 85

Query: 79  LAQ---ASSYIGKNITNADGSI 97
                 AS++IGK +       
Sbjct: 86  SQSLFFASNFIGKLVEYEGNQT 107


>gi|225871933|ref|YP_002753387.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793508|gb|ACO33598.1| FlgD domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 210

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 16  KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            S +   +  + FL LL+ ++K+QDPT     ++ + QL   + ++Q + +N  L
Sbjct: 52  NSTATSGITSNDFLTLLVAEMKNQDPTSNTDPNQYIDQLVQVNSLQQLISINQEL 106


>gi|332296629|ref|YP_004438552.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179732|gb|AEE15421.1| flagellar hook capping protein [Thermodesulfobium narugense DSM
           14796]
          Length = 139

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
           +AFL LLI Q+K+QDP + M  +E + +L+  +  +Q   M++++Q  + + N   A++ 
Sbjct: 32  NAFLTLLIAQLKNQDPLDAMSTNEFMNELSALTTTQQMTNMSNSVQNSMTNINNLYATNL 91

Query: 86  IGKNITN---ADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
           IGK I      + + S  V  + + +   + +  + + I +++ + +S
Sbjct: 92  IGKKIQYTAADNSTQSATVTQVTIKNGNPSLVLDNGSTINLSSVVSVS 139


>gi|254286493|ref|ZP_04961450.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
 gi|150423442|gb|EDN15386.1| flagellar hook capping protein [Vibrio cholerae AM-19226]
          Length = 101

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
           Q++  ++  +K+L Q+ FL LL  Q+  QDP +P+   + +AQ+A F+ ++   +MN+  
Sbjct: 24  QKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQF 83

Query: 71  QEL---LKSNNLAQASSY 85
           + L   + SN   QASS 
Sbjct: 84  ESLNSSMTSNQALQASSL 101


>gi|34558067|ref|NP_907882.1| flagellar basal body rod modification protein [Wolinella
          succinogenes DSM 1740]
 gi|34483785|emb|CAE10782.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
          Length = 270

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 16 KSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE 72
             +  TL +DAF++L + Q+K QDPT PM+  + + Q A+ +Q+EQ  +M  TL  
Sbjct: 20 AQNNNGTLDKDAFMRLFLEQLKSQDPTSPMETEKILEQTAMLTQLEQQEEMKKTLSS 76


>gi|283784084|ref|YP_003363949.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
 gi|282947538|emb|CBG87090.1| lateral flagellar rod protein [Citrobacter rodentium ICC168]
          Length = 270

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLA 80
           G + FL L + +I++QDPT+P   ++ + QL+  +Q+    +M+   +T   L+ +  + 
Sbjct: 63  GVETFLTLFVAEIQNQDPTDPADPTDYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVM 122

Query: 81  QASSYIGKNITNADGSIS 98
              + +G +I     ++ 
Sbjct: 123 ALGNLVGDDIMVQTTTLQ 140


>gi|225849152|ref|YP_002729316.1| flagellar hook capping protein FlgD [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644122|gb|ACN99172.1| putative flagellar hook capping protein FlgD [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 219

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQ---VAQLAVFSQM 60
           +T      +    +     +    FLK+L+T ++ QDP      S+      +L     +
Sbjct: 11  DTVNTGKPKVVDANYDNSKISNSDFLKILLTDLQWQDPLNAKDISDFLDNTVKLRQMESL 70

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
           +   ++   L +   +N++  ASS IGK +       
Sbjct: 71  DSFQKLADALSKF--TNSILTASSLIGKKVKYEGNQT 105


>gi|149184206|ref|ZP_01862524.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
 gi|148831526|gb|EDL49959.1| flagellar hook capping protein [Erythrobacter sp. SD-21]
          Length = 71

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA 80
           +LGQ  FL+LL  Q++ QDP  P+   E ++Q+A FS +    + N++L+ +    +L 
Sbjct: 2  DSLGQGDFLRLLTVQMQQQDPFNPVDNKEMLSQMAQFSSLAGVAETNASLERIADQLDLL 61


>gi|300854214|ref|YP_003779198.1| putative flagellar hook protein FlgD [Clostridium ljungdahlii DSM
           13528]
 gi|300434329|gb|ADK14096.1| predicted flagellar hook protein FlgD [Clostridium ljungdahlii DSM
           13528]
          Length = 239

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQ--DPTEPMKASEQVAQLAVFS 58
           ++ N+  + T       K    + ++ FLK+L  ++ +Q    ++   +++ ++QLA FS
Sbjct: 20  IDTNSSSDTTSNGTKIVKKNNDIDKNMFLKILSAELANQDPTSSDSQSSTQYISQLAQFS 79

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDN 118
            +EQ   +NS+ +    ++ + +  ++   +      ++SG V  +      +    +  
Sbjct: 80  SLEQMANLNSSTKMGTANSLMNKYVTF--SDTDEQGNNVSGQVVGVIKDGDDIELNVLMG 137

Query: 119 TE 120
            E
Sbjct: 138 QE 139


>gi|301648571|ref|ZP_07248286.1| flagellar hook capping protein [Escherichia coli MS 146-1]
 gi|301073358|gb|EFK88164.1| flagellar hook capping protein [Escherichia coli MS 146-1]
          Length = 246

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 46  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 105

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 106 GNLVGDDIMVQT 117


>gi|300900361|ref|ZP_07118537.1| flagellar hook capping protein [Escherichia coli MS 198-1]
 gi|300356129|gb|EFJ71999.1| flagellar hook capping protein [Escherichia coli MS 198-1]
          Length = 225

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26 DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
          D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 25 DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 84

Query: 83 SSYIGKNITNAD 94
           + +G +I    
Sbjct: 85 GNLVGDDIMVQT 96


>gi|224825776|ref|ZP_03698880.1| flagellar basal body rod modification protein [Lutiella nitroferrum
           2002]
 gi|224602000|gb|EEG08179.1| flagellar basal body rod modification protein [Lutiella nitroferrum
           2002]
          Length = 226

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           +  +T  +      + +   ++ G D F+ LL+ QIK+Q+P +P   S+ V QL   +QM
Sbjct: 8   LNDSTASSQGATPVASNGQSQSSGSDMFMTLLMAQIKNQNPLDPADPSQFVNQLVQMNQM 67

Query: 61  EQSVQMNSTLQE---LLKSNNLAQASSYIGKNITNADGSIS 98
           + S+ M S L++   LL+        + +G ++     ++ 
Sbjct: 68  QTSLGMLSQLKDNAVLLRELQGLGLGNQVGNSVLVQSNTVQ 108


>gi|116626494|ref|YP_828650.1| flagellar hook capping protein [Candidatus Solibacter usitatus
          Ellin6076]
 gi|116229656|gb|ABJ88365.1| flagellar hook capping protein [Candidatus Solibacter usitatus
          Ellin6076]
          Length = 99

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 8  NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN 67
          + T    + +     + +D FL+LL+ QIK+QDP  P    + + QLA F Q+EQS+ M 
Sbjct: 13 SGTSAASTSTGGTSAVTKDMFLQLLVAQIKNQDPLSPTDGVQFLTQLAQFQQLEQSINMG 72

Query: 68 STLQEL 73
            +  +
Sbjct: 73 QDVTAI 78


>gi|315616828|gb|EFU97445.1| flagellar hook capping family protein [Escherichia coli 3431]
          Length = 244

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|58038900|ref|YP_190864.1| basal-body rod modification protein FlgD [Gluconobacter oxydans
           621H]
 gi|58001314|gb|AAW60208.1| Basal-body rod modification protein FlgD [Gluconobacter oxydans
           621H]
          Length = 246

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 24  GQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQAS 83
             + FL LL TQ++HQDP+ P       A+LA F+ ++Q V+ N+ L  L+ +    Q +
Sbjct: 54  NFNQFLTLLTTQLQHQDPSNPTSTDSFTAELAQFAGVQQQVETNTNLTSLISATQDNQMA 113

Query: 84  ---SYIGKNITNADGSI 97
              S IGK  T +  S+
Sbjct: 114 SAVSLIGKTTTASSSSL 130


>gi|188997540|ref|YP_001931791.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932607|gb|ACD67237.1| flagellar hook capping protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 218

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           ++  +   +    +     + Q+ FLK+L+  +K QDP      S+ +       QME  
Sbjct: 11  DSATSNKPKVVDANYDNSKMSQNDFLKVLLADLKWQDPMNAKDISDFIDNSVKLRQMESL 70

Query: 64  VQMNSTLQELLK-SNNLAQASSYIGKNITNADGSI 97
             +   +  L   +N++  ASS IGK +       
Sbjct: 71  DSIQKLVDTLSTFTNSIVNASSMIGKKVKYEGNQT 105


>gi|327254553|gb|EGE66169.1| flagellar hook capping family protein [Escherichia coli STEC_7v]
          Length = 237

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T  + T      + S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TAESNTVAASDTTSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|330818586|ref|YP_004362291.1| basal-body rod modification protein FlgD [Burkholderia gladioli
           BSR3]
 gi|327370979|gb|AEA62335.1| basal-body rod modification protein FlgD [Burkholderia gladioli
           BSR3]
          Length = 259

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           +N     T    S + S   L Q  FL LL+TQ+++QDPT P+ +S+  +QLA  + +  
Sbjct: 14  VNNTPTDTMNANSSNTSAADL-QQTFLTLLVTQLQNQDPTSPVDSSQMTSQLAQINTVSG 72

Query: 63  SVQ---MNSTLQELLKSNNLAQASSYIGKNITNADGSIS 98
             Q     ++L   + +    QA+  +G N+     ++S
Sbjct: 73  IAQLNSSLTSLSSQITAGQQTQAAMLVGSNVLAPGNTLS 111


>gi|170679856|ref|YP_001742372.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
 gi|170517574|gb|ACB15752.1| lateral flagellar rod protein LfgD [Escherichia coli SMS-3-5]
          Length = 237

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|323975931|gb|EGB71025.1| flagellar hook capping protein [Escherichia coli TW10509]
          Length = 237

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|331645417|ref|ZP_08346521.1| putative flagellar hook capping protein [Escherichia coli M605]
 gi|331045579|gb|EGI17705.1| putative flagellar hook capping protein [Escherichia coli M605]
          Length = 237

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T  +          S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|170021361|ref|YP_001726315.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
 gi|260853465|ref|YP_003227356.1| putative lateral flagellar hook assembly protein [Escherichia coli
           O26:H11 str. 11368]
 gi|260866412|ref|YP_003232814.1| putative lateral flagellar hook assembly protein [Escherichia coli
           O111:H- str. 11128]
 gi|169756289|gb|ACA78988.1| flagellar hook capping protein [Escherichia coli ATCC 8739]
 gi|257752114|dbj|BAI23616.1| predicted lateral flagellar hook assembly protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257762768|dbj|BAI34263.1| predicted lateral flagellar hook assembly protein [Escherichia coli
           O111:H- str. 11128]
 gi|323158104|gb|EFZ44203.1| flagellar hook capping family protein [Escherichia coli EPECa14]
 gi|323178495|gb|EFZ64073.1| flagellar hook capping family protein [Escherichia coli 1180]
          Length = 237

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T  +          S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|300936124|ref|ZP_07151063.1| flagellar hook capping protein [Escherichia coli MS 21-1]
 gi|306813305|ref|ZP_07447498.1| putative lateral flagellar hook assembly protein [Escherichia coli
           NC101]
 gi|300458702|gb|EFK22195.1| flagellar hook capping protein [Escherichia coli MS 21-1]
 gi|305854068|gb|EFM54507.1| putative lateral flagellar hook assembly protein [Escherichia coli
           NC101]
          Length = 237

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|126443508|ref|YP_001061245.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei 668]
 gi|134280664|ref|ZP_01767374.1| basal-body rod modification protein FlgD, putative [Burkholderia
           pseudomallei 305]
 gi|167725929|ref|ZP_02409165.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei DM98]
 gi|167905089|ref|ZP_02492294.1| flagellar basal body rod modification protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|254299687|ref|ZP_04967136.1| LfgD [Burkholderia pseudomallei 406e]
 gi|126222999|gb|ABN86504.1| flagellar hook capping protein [Burkholderia pseudomallei 668]
 gi|134247686|gb|EBA47770.1| basal-body rod modification protein FlgD, putative [Burkholderia
           pseudomallei 305]
 gi|157809654|gb|EDO86824.1| LfgD [Burkholderia pseudomallei 406e]
          Length = 241

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64
              Q   S   +      D F KLL  QI++Q+P EPM AS+ V Q+        +    
Sbjct: 26  GAGQHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
            +      L++S  +    S +G  +     S+           T    I +DN E  +T
Sbjct: 86  NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVT 139

Query: 125 TGIR 128
             + 
Sbjct: 140 VVLT 143


>gi|218703524|ref|YP_002411043.1| lateral flagellar rod FlgD-like protein [Escherichia coli UMN026]
 gi|293403354|ref|ZP_06647445.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378966|ref|ZP_06988847.1| flagellar basal-body rod modification protein FlgD [Escherichia
           coli FVEC1302]
 gi|218430621|emb|CAR11487.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli UMN026]
 gi|291429207|gb|EFF02227.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280079|gb|EFI21583.1| flagellar basal-body rod modification protein FlgD [Escherichia
           coli FVEC1302]
          Length = 237

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|293408366|ref|ZP_06652205.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471544|gb|EFF14027.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 234

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 34  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 93

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 94  GNLVGDDIMVQT 105


>gi|331671803|ref|ZP_08372599.1| putative flagellar hook capping protein [Escherichia coli TA280]
 gi|331070792|gb|EGI42151.1| putative flagellar hook capping protein [Escherichia coli TA280]
          Length = 237

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T  +          S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TAESNNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|326386929|ref|ZP_08208543.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
          DSM 19370]
 gi|326208609|gb|EGD59412.1| flagellar hook capping protein [Novosphingobium nitrogenifigens
          DSM 19370]
          Length = 90

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKS 76
            LG   FLKLL  Q+ HQDPT+P+  ++ VAQLA FS +  + Q N+ L  +   
Sbjct: 26 NKLGATDFLKLLTAQLNHQDPTQPVDNTQMVAQLAQFSSLAAANQTNTQLSTISDQ 81


>gi|307136857|ref|ZP_07496213.1| putative lateral flagellar hook assembly protein [Escherichia coli
           H736]
 gi|331640712|ref|ZP_08341859.1| putative flagellar hook capping protein [Escherichia coli H736]
 gi|331040086|gb|EGI12294.1| putative flagellar hook capping protein [Escherichia coli H736]
          Length = 237

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|323191537|gb|EFZ76798.1| flagellar hook capping family protein [Escherichia coli RN587/1]
          Length = 237

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|167567749|ref|ZP_02360665.1| flagellar basal body rod modification protein [Burkholderia
           oklahomensis EO147]
 gi|167574700|ref|ZP_02367574.1| flagellar basal body rod modification protein [Burkholderia
           oklahomensis C6786]
          Length = 223

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 11  QQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            +  + + + +    D F KLL  QI++Q+P EPM +S+ V QL +  Q +    +    
Sbjct: 20  NKTPAPNANPEGSPADLFAKLLDAQIRNQNPLEPMDSSQFVTQLMMMQQTQAMETVAVLT 79

Query: 71  QELLKSNNLAQASSY---IGKNITNADGSIS 98
            + L + +     +    +G  +     SI 
Sbjct: 80  NQNLATTSSMLVVALGSQVGAAVMAKADSIE 110


>gi|125657217|gb|ABN48705.1| flagellar hook capping protein [Burkholderia pseudomallei]
          Length = 231

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64
              Q   S   +      D F KLL  QI++Q+P EPM AS+ V Q+        +    
Sbjct: 16  GAGQHTPSPYANGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 75

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
            +      L++S  +    S +G  +     S+           T    I +DN E  +T
Sbjct: 76  NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSLE------LKDDTRDARIVLDNAESDVT 129

Query: 125 TGIR 128
             + 
Sbjct: 130 VVLT 133


>gi|323181546|gb|EFZ66966.1| flagellar hook capping family protein [Escherichia coli 1357]
          Length = 237

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T+ +          S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TQESSNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|316936124|ref|YP_004111106.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
 gi|315603838|gb|ADU46373.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
          Length = 222

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82
           + FL LL+TQ+++Q+P EP   ++ V+QL  ++  EQ   +NS L  L  S N      +
Sbjct: 31  NDFLTLLVTQLQNQNPLEPTDTNDFVSQLTSYANFEQQQALNSNLSSLTASLNSLLTLNS 90

Query: 83  SSYIGKNITNADGSIS 98
           S+YIG+ +T    S +
Sbjct: 91  SNYIGQTVTAKADSGT 106


>gi|300817271|ref|ZP_07097489.1| flagellar hook capping protein [Escherichia coli MS 107-1]
 gi|307313520|ref|ZP_07593141.1| flagellar hook capping protein [Escherichia coli W]
 gi|300530247|gb|EFK51309.1| flagellar hook capping protein [Escherichia coli MS 107-1]
 gi|306906688|gb|EFN37199.1| flagellar hook capping protein [Escherichia coli W]
 gi|315059541|gb|ADT73868.1| flagellar hook assembly protein [Escherichia coli W]
 gi|323379900|gb|ADX52168.1| flagellar hook capping protein [Escherichia coli KO11]
          Length = 237

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|256020227|ref|ZP_05434092.1| flagellar hook capping protein [Shigella sp. D9]
 gi|332281389|ref|ZP_08393802.1| lateral flagellar rod protein [Shigella sp. D9]
 gi|332103741|gb|EGJ07087.1| lateral flagellar rod protein [Shigella sp. D9]
          Length = 237

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
           T+ +          S  +   D FL L + +I++QDPT+P  A+E + QL+  +Q+    
Sbjct: 16  TQESSNVAASDTQSSSDSSPVDTFLTLFVAEIQNQDPTDPTDATEYIDQLSSMAQVAMME 75

Query: 65  QMN---STLQELLKSNNLAQASSYIGKNITNAD 94
           +M+   +T   L+ +  +    + +G +I    
Sbjct: 76  EMSVQANTNAVLMSNIQVMALGNLVGDDIMVQT 108


>gi|167576661|ref|ZP_02369535.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis TXDOH]
          Length = 241

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64
              Q+  S S +      D F KLL  QI++Q+P EPM AS+ V Q+        +    
Sbjct: 26  GAGQRVPSPSPNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
            +      L++S  +    S +G  +     S+
Sbjct: 86  NLTQNSAALMQSMFVVSLGSQVGAQVMVRTDSL 118


>gi|27464951|gb|AAN63048.1| flagellar component FlgD [Vibrio vulnificus]
          Length = 181

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 42 TEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNAD 94
           +P+   + +AQ+A F+ ++   +MNS  + L   + SN   QASS +G+++    
Sbjct: 1  FKPVSNDQMIAQMASFATVDGIGKMNSQFESLNSSMTSNQALQASSLVGRDVLVPG 56


>gi|90422389|ref|YP_530759.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
 gi|90104403|gb|ABD86440.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
          Length = 218

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL LL+T++++Q+P +P   ++ V+Q+  ++  EQ   +N+ L  L  S N      ++
Sbjct: 28  DFLTLLVTELQNQNPLDPTDTTDFVSQMTSYANFEQQQTLNTNLSSLATSFNSLLTLNST 87

Query: 84  SYIGKNITNADGSIS 98
           +YIG+ +T    S +
Sbjct: 88  NYIGQTVTAKADSAT 102


>gi|295687863|ref|YP_003591556.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
 gi|295429766|gb|ADG08938.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
          Length = 94

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 22 TLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL 79
           LG   FLKLL+TQ+++Q+P +P   +E  +QLA +SQ+EQ + MN TL  +  + + 
Sbjct: 25 KLGTTDFLKLLMTQLENQNPLDPSDPTEFTSQLATYSQLEQQISMNDTLTTMSDTMSN 82


>gi|15606897|ref|NP_214278.1| flagellar hook assembly protein [Aquifex aeolicus VF5]
 gi|2984144|gb|AAC07679.1| flagellar hook assembly protein [Aquifex aeolicus VF5]
          Length = 209

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 21 KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSN 77
            +  + FLK+ +  +++QDP      S+ +  +   +Q++   +M   L+ L   +   
Sbjct: 24 DNMSANDFLKIYLETLRYQDPFNQTDISKSLDDMVKINQIKYFTEMKQFLESLKAWMNQM 83

Query: 78 NLAQASSYIGKN 89
               ++ IGK 
Sbjct: 84 TFLNTATLIGKE 95


>gi|213615927|ref|ZP_03371753.1| flagellar basal body rod modification protein [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 97

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 4  NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
          NT V  T    S + S     Q +FL LL+ Q+K+QDPT P++ +E   QLA  S +   
Sbjct: 12 NTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGI 71

Query: 64 VQMNSTLQEL---LKSNNLAQASSYI 86
           ++N+TL  +   + ++   QA++ I
Sbjct: 72 EKLNTTLGAISGQIDNSQSLQATTLI 97


>gi|16125153|ref|NP_419717.1| flagellar hook assembly protein FlgD [Caulobacter crescentus CB15]
 gi|221233883|ref|YP_002516319.1| basal-body rod modification protein FlgD [Caulobacter crescentus
           NA1000]
 gi|3493242|gb|AAC33328.1| putative scaffolding protein [Caulobacter crescentus CB15]
 gi|13422165|gb|AAK22885.1| flagellar hook assembly protein FlgD, putative [Caulobacter
           crescentus CB15]
 gi|220963055|gb|ACL94411.1| Basal-body rod modification protein FlgD [Caulobacter crescentus
           NA1000]
          Length = 227

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +          + S++     ++ FL+LL TQ+K+QDP  P   ++   Q+   + +EQ 
Sbjct: 7   SQNTASVLDRINNSRTSLATNKETFLQLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
           +  N  L  L+       L++  + IGK +     + +
Sbjct: 67  LVTNDLLAALVGMNTGTGLSEGVAMIGKQVAAISDTST 104


>gi|192289141|ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
 gi|192282890|gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
          Length = 222

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL LLI+++++QDP      ++ + QL  ++   Q  ++NS++  L  S +      + 
Sbjct: 32  DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 91

Query: 84  SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           +YIG  +     + +    +     T   A +  +  I  ++G  +
Sbjct: 92  NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTV 137


>gi|295690743|ref|YP_003594436.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
 gi|295432646|gb|ADG11818.1| flagellar hook capping protein [Caulobacter segnis ATCC 21756]
          Length = 242

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           +          +  ++      + FLKLL TQ+K+QDP  P   ++   Q+   + +EQ 
Sbjct: 7   SQNTTSVLDRINNGRTSMASNTETFLKLLTTQLKNQDPLSPTDTTQMTQQITQMTGVEQQ 66

Query: 64  VQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
           +  N  L  L+       L +  S IGK +T    S +
Sbjct: 67  LVTNDLLAALVGMNTGTGLTEGVSMIGKQVTATTDSST 104


>gi|188493605|ref|ZP_03000875.1| flagellar hook capping protein [Escherichia coli 53638]
 gi|188488804|gb|EDU63907.1| flagellar hook capping protein [Escherichia coli 53638]
          Length = 237

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++Q+PT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 37  DTFLTLFVAEIQNQEPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 96

Query: 83  SSYIGKNITNAD 94
            + +G +I    
Sbjct: 97  GNLVGDDIMVQT 108


>gi|167614836|ref|ZP_02383471.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis Bt4]
 gi|257141421|ref|ZP_05589683.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis E264]
          Length = 241

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64
              Q+  S   +      D F KLL  QI++Q+P EPM AS+ V Q+        +    
Sbjct: 26  GAGQRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 85

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
            +      L++S  +    S +G  +     S+
Sbjct: 86  NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSL 118


>gi|50954408|ref|YP_061696.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50950890|gb|AAT88591.1| flagellar hook assembly protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 90

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 5  TEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSV 64
                       +  +T+G + F+ LL+ Q+++QDPT PM  ++ V Q    + M    
Sbjct: 11 NSTPSLYATQPTRQPVQTMGAEQFMHLLVVQLQNQDPTSPMDTAQMVQQTTQLAMMRSMQ 70

Query: 65 QM 66
           +
Sbjct: 71 DI 72


>gi|83716169|ref|YP_438388.1| flagellar basal body rod modification protein [Burkholderia
           thailandensis E264]
 gi|83649994|gb|ABC34058.1| basal-body rod modification protein FlgD, putative [Burkholderia
           thailandensis E264]
          Length = 231

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 8   NPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLA---VFSQMEQSV 64
              Q+  S   +      D F KLL  QI++Q+P EPM AS+ V Q+        +    
Sbjct: 16  GAGQRMPSPYSNGANSPTDLFAKLLAAQIQNQNPLEPMDASQFVTQIMMGQQTEALGVVA 75

Query: 65  QMNSTLQELLKSNNLAQASSYIGKNITNADGSI 97
            +      L++S  +    S +G  +     S+
Sbjct: 76  NLTQNSAALMESMLVVSLGSQVGTQVMVRTDSL 108


>gi|328545576|ref|YP_004305685.1| flagellar hook capping protein [polymorphum gilvum SL003B-26A1]
 gi|326415317|gb|ADZ72380.1| Flagellar hook capping protein [Polymorphum gilvum SL003B-26A1]
          Length = 222

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLA---QAS 83
            FL L++TQ+++Q+P +P      + ++  ++  +   +++  L  +  S +        
Sbjct: 31  DFLSLMLTQLQNQNPLDPTDTDTYLDRMVSYASYDTQTEISEQLSSIASSVSQMISGSGL 90

Query: 84  SYIGKNITNADGSIS 98
            Y+G+ +     + +
Sbjct: 91  GYLGQTVEAYGNTTT 105


>gi|283834456|ref|ZP_06354197.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
           29220]
 gi|291070003|gb|EFE08112.1| basal-body rod modification protein FlgD [Citrobacter youngae ATCC
           29220]
          Length = 295

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQA 82
           D FL L + +I++QDPT+P   +  + QL+  +Q+    +M+   +T   L+ +  +   
Sbjct: 70  DTFLTLFVAEIENQDPTDPTDPTAYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMAL 129

Query: 83  SSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            + +G +I     + +  +     +  G   +    T++ +       +
Sbjct: 130 GNMVGDDIMVQ--TTTLDIEDNSKAIQGRVTLDDSCTDVDLHFTDEAGD 176


>gi|86747890|ref|YP_484386.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
 gi|86570918|gb|ABD05475.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
          Length = 220

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQA 82
           + F+ LLIT++++Q+P EP   ++ V QL  ++  EQ   +N+ L  L  S N      +
Sbjct: 29  NEFMTLLITELQNQNPLEPTSTTDFVNQLTSYANYEQQQTLNANLTTLTTSLNSLLTLNS 88

Query: 83  SSYIGKNITNADGSIS 98
           S+YIG+ +T    + +
Sbjct: 89  SNYIGQTVTAKADTGT 104


>gi|94968674|ref|YP_590722.1| putative basal-body rod modification protein FlgD [Candidatus
          Koribacter versatilis Ellin345]
 gi|94550724|gb|ABF40648.1| putative basal-body rod modification protein FlgD [Candidatus
          Koribacter versatilis Ellin345]
          Length = 92

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 1  MEINTEVNPTQQEFSKSKSKKTLGQDA--FLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
          M I           + S     +G     F +LL+ Q+K QDPT PM  S+ V+QL   +
Sbjct: 1  MNITGPAVGQATNAATSGPVSGMGDLDTTFAQLLVAQLKSQDPTSPMDPSQLVSQLVGLN 60

Query: 59 QMEQSVQMNSTLQELLK--SNNLAQASSYIGK 88
           ++    +   L  L    +++ A   +  GK
Sbjct: 61 TLDAVTSIYQLLAGLATIPTSSAANHYAAGGK 92


>gi|323171062|gb|EFZ56711.1| flagellar hook capping family protein [Escherichia coli LT-68]
          Length = 234

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 37/69 (53%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
           DAFL L + +I++QDPT+  +  +Q++ +A  + ME+     +T   L+ +  +    + 
Sbjct: 37  DAFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96

Query: 86  IGKNITNAD 94
           +G +I    
Sbjct: 97  VGDDIMVQT 105


>gi|320107028|ref|YP_004182618.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
 gi|319925549|gb|ADV82624.1| flagellar hook capping protein [Terriglobus saanensis SP1PR4]
          Length = 94

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%)

Query: 6  EVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ 65
              T    + + S  T+  D F+ LL+ ++++QDPT P   ++ + QL   + ++Q + 
Sbjct: 17 SAMDTSTNPTTATSNDTITSDDFMTLLVAEMQNQDPTAPSDPTQYIQQLVGVNSLQQLIG 76

Query: 66 MNSTLQELLKS 76
          +N+ + EL  S
Sbjct: 77 INTGIGELTSS 87


>gi|59889779|emb|CAH19135.1| Lateral flagellar rod protein (FlgD-like) [Escherichia coli]
 gi|284920043|emb|CBG33100.1| lateral flagellar rod protein (FlgD-like) [Escherichia coli 042]
          Length = 234

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 36/69 (52%)

Query: 26  DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSY 85
           D FL L + +I++QDPT+  +  +Q++ +A  + ME+     +T   L+ +  +    + 
Sbjct: 37  DTFLTLFVAEIQNQDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNL 96

Query: 86  IGKNITNAD 94
           +G +I    
Sbjct: 97  VGDDIMVQT 105


>gi|91978425|ref|YP_571084.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5]
 gi|91684881|gb|ABE41183.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB5]
          Length = 242

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ N +L  LLK        QA ++IG N        
Sbjct: 53  PLDPLDTNQFTQQLVQFAGVEQQLKTNDSLSSLLKLQTTAQTTQAMNFIGANA------- 105

Query: 98  SGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
             VV+  +    G TA    +T+ P++  + I N
Sbjct: 106 --VVDGSKSHFDGKTAGWSLSTDKPVSAQVSIQN 137


>gi|39934379|ref|NP_946655.1| flagellar hook capping protein [Rhodopseudomonas palustris CGA009]
 gi|192289902|ref|YP_001990507.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
 gi|39648228|emb|CAE26747.1| possible flagellar basal-body rod modification protein FlgD
           [Rhodopseudomonas palustris CGA009]
 gi|192283651|gb|ACF00032.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 37  KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93
           K+Q+PT+P+  ++   QL  F+ +EQ ++ N +L  L++        QA S +G N    
Sbjct: 50  KNQNPTDPLDTNQFTQQLVQFAGIEQQLKTNDSLSSLVQLQTTAQATQAMSLVGANAIVD 109

Query: 94  DGSIS 98
              + 
Sbjct: 110 GSKVQ 114


>gi|90422504|ref|YP_530874.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
 gi|90104518|gb|ABD86555.1| flagellar hook capping protein [Rhodopseudomonas palustris BisB18]
          Length = 237

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ NS L+ L+K        QA +++G      DG  
Sbjct: 53  PLDPLDTNQFTQQLVQFAGVEQQLKSNSQLESLVKLQTGAQATQALNFVGATAVV-DGKT 111

Query: 98  SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           + +   +      +   +     I   TG  +
Sbjct: 112 TELTKGVAAWGINVPKSSTVTVNITNATGQTV 143


>gi|316935454|ref|YP_004110436.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
 gi|315603168|gb|ADU45703.1| flagellar hook capping protein [Rhodopseudomonas palustris DX-1]
          Length = 239

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 37  KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93
           K+Q+P +P+  ++   QL  F+ +EQ ++ N +L  L++        QA ++IG +    
Sbjct: 50  KNQNPMDPLDTNQFTQQLVQFAGIEQQLKSNESLSSLVELQTTAQATQALNFIGASAVVD 109

Query: 94  DGSIS 98
                
Sbjct: 110 GSKTQ 114


>gi|218462420|ref|ZP_03502511.1| flagellar basal body rod modification protein [Rhizobium etli Kim
          5]
          Length = 61

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 17 SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFS 58
          ++ K TL  D FL+LLI Q+K+QDPT+PM ASEQ++QLA FS
Sbjct: 20 AQKKATLNYDNFLQLLIAQMKNQDPTDPMDASEQMSQLASFS 61


>gi|289809013|ref|ZP_06539642.1| flagellar basal body rod modification protein [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 43

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 27 AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNS 68
          +FL LL+ Q+K+QDPT P++ +E   QLA  S +    ++N+
Sbjct: 2  SFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNT 43


>gi|163781857|ref|ZP_02176857.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883077|gb|EDP76581.1| flagellar hook assembly protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 210

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 21  KTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL- 79
             +  + F+K+ +  +K QDP +    S+ +  +   +Q++    M   +   +   N  
Sbjct: 25  DNMSANEFMKIYLETLKFQDPFKQQDLSKSLEDVVKLNQVKFYTDMKGFMDNFVAWMNQV 84

Query: 80  --AQASSYIGKNITNADGSI 97
              Q  + IGK    A  ++
Sbjct: 85  TFMQTINLIGKEFVFASDTL 104


>gi|153840218|ref|ZP_01992885.1| flagellar basal body rod modification protein [Vibrio
          parahaemolyticus AQ3810]
 gi|149746114|gb|EDM57244.1| flagellar basal body rod modification protein [Vibrio
          parahaemolyticus AQ3810]
          Length = 59

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 31 LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIG 87
          L++ QI++QDP  P+  +E V QLA FSQ++ +  M+  +Q  +   +  Q  S  G
Sbjct: 1  LMVAQIQNQDPLNPLDGTEYVGQLAQFSQVQSTENMSKVMQNSMVLLDNMQVLSTAG 57


>gi|146341768|ref|YP_001206816.1| putative basal-body rod modification protein flgD [Bradyrhizobium
           sp. ORS278]
 gi|146194574|emb|CAL78599.1| putative basal-body rod modification protein flgD [Bradyrhizobium
           sp. ORS278]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL+LL++++++QDP      ++ V Q+  ++       +N+++  L  S +      + 
Sbjct: 28  DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 87

Query: 84  SYIGKNITNADGS 96
           +YIG  +     +
Sbjct: 88  NYIGHTVEAKSDT 100


>gi|75674799|ref|YP_317220.1| flagellar hook capping protein [Nitrobacter winogradskyi Nb-255]
 gi|74419669|gb|ABA03868.1| Flagellar hook capping protein [Nitrobacter winogradskyi Nb-255]
          Length = 230

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ N  L  L+   ++    QA  ++GKN     G+ 
Sbjct: 55  PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLSNLVSLQQTTQATQALDFVGKNAVIDGGTA 114

Query: 98  S 98
           +
Sbjct: 115 T 115


>gi|148254599|ref|YP_001239184.1| putative basal-body rod modification protein flgD [Bradyrhizobium
           sp. BTAi1]
 gi|146406772|gb|ABQ35278.1| putative basal-body rod modification protein flgD [Bradyrhizobium
           sp. BTAi1]
          Length = 221

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL+LL++++++QDP      ++ V Q+  ++       +N+++  L  S +      + 
Sbjct: 31  DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 90

Query: 84  SYIGKNITNADGS 96
           +YIG  +     +
Sbjct: 91  NYIGHTVEAKTDT 103


>gi|86751225|ref|YP_487721.1| flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
 gi|86574253|gb|ABD08810.1| Flagellar hook capping protein [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
           P EP+  ++   QL  F+ +EQ ++ N TL  LLK        QA ++IG          
Sbjct: 51  PLEPLDTNQFTQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIG---------A 101

Query: 98  SGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           + VV+  +    G TA    +T+ P+T  + +
Sbjct: 102 TAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSV 133


>gi|148253401|ref|YP_001237986.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. BTAi1]
 gi|146405574|gb|ABQ34080.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. BTAi1]
          Length = 230

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ N  L  L+   ++    QA +++GK       + 
Sbjct: 55  PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLGSLISMQQTTQATQALAFVGKTAVVNGSTT 114


>gi|289548123|ref|YP_003473111.1| flagellar hook capping protein [Thermocrinis albus DSM 14484]
 gi|289181740|gb|ADC88984.1| flagellar hook capping protein [Thermocrinis albus DSM 14484]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 17  SKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME---QSVQMNSTLQEL 73
           ++    L    FLK+ +  ++ QDP +    S+ +  +   +Q++           L++L
Sbjct: 15  TQGVDNLSPQDFLKIYLETLRFQDPFQQQDLSKMLDDMVKLNQVKFFNDVRNTLENLKDL 74

Query: 74  LKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
                LA   S + + +          V++  +   G T   + + +I 
Sbjct: 75  TLQMTLAAGLSVLNREV---------YVSSEDIIPNGATYYLMSDRDIK 114


>gi|299131956|ref|ZP_07025151.1| flagellar hook capping protein [Afipia sp. 1NLS2]
 gi|298592093|gb|EFI52293.1| flagellar hook capping protein [Afipia sp. 1NLS2]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96
           P +P+  ++  AQL  F+Q+EQ ++ N  L  L+         QA S++G+ I+    +
Sbjct: 57  PLDPLDTNQFTAQLVQFAQVEQQLKANDQLSSLVALQKTAQSTQALSFVGQTISVDGST 115


>gi|260774937|ref|ZP_05883838.1| flagellar basal-body rod modification protein FlgD [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609192|gb|EEX35350.1| flagellar basal-body rod modification protein FlgD [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 173

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 50  QVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNA--------DGSIS 98
            +AQ+A F+ ++   +MN+  + L   + SN   QASS +G+++           DGS++
Sbjct: 1   MIAQMASFATVDGIGKMNNQFETLNASMTSNQALQASSLVGRDVLVPGAAGVKADDGSMA 60

Query: 99  GVVNAIQVSSTGLTAITV 116
            +V   Q     +  +  
Sbjct: 61  AMVKLPQSVDNLMVRVED 78


>gi|322432990|ref|YP_004210239.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
 gi|321165217|gb|ADW70921.1| flagellar hook capping protein [Acidobacterium sp. MP5ACTX9]
          Length = 162

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 10  TQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNST 69
           T    +      +     FL LL+ ++++QDPT PM ++  V Q+   +Q++Q + +N T
Sbjct: 36  TTSSTTSDGLTGSTAGTTFLNLLVKELQNQDPTAPMDSTAMVGQMISLNQLDQLISINQT 95

Query: 70  LQELLKSNNLA 80
           L     +   +
Sbjct: 96  LGGSSSTATAS 106


>gi|115522803|ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
 gi|115516750|gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 27  AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNL---AQAS 83
            FL LL+ ++++Q+P +P   ++  +QL  ++  EQ   +NS L  L  S N      +S
Sbjct: 31  DFLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLNSS 90

Query: 84  SYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRI 129
           +YIG+ +T    S +    +I    +  +A       +  ++G  +
Sbjct: 91  NYIGQTVTAKADSATLENGSISFGYSLNSAAKNVTLTVSDSSGNTV 136


>gi|333004884|gb|EGK24404.1| basal-body rod modification protein flgD [Shigella flexneri VA-6]
          Length = 180

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 45  MKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSISGVV 101
           M+ +E  +QLA  S +    ++N+TL  +   + ++   QAS+ IG  +     ++    
Sbjct: 1   MENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGT 60

Query: 102 NAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            + + + T  T   V+  +        I++
Sbjct: 61  GSEEGAVTTTTPFGVELQQAADKVTATITD 90


>gi|331666545|ref|ZP_08367419.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
 gi|331065769|gb|EGI37653.1| basal-body rod modification protein FlgD [Escherichia coli TA271]
          Length = 195

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 37 KHQDPTEPMKASEQVAQLAVFSQMEQSVQMN---STLQELLKSNNLAQASSYIGKNITNA 93
          K+QDPT+P  A+E + QL+  +Q+    +M+   +T   L+ +  +    + +G +I   
Sbjct: 6  KNQDPTDPTDATEYIDQLSSMAQVAMMEEMSVQANTNAVLMSNIQVMALGNLVGDDIMVQ 65

Query: 94 D 94
           
Sbjct: 66 T 66


>gi|161511086|ref|NP_773637.2| flagellar hook assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 235

 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ N  L +L+   ++    QA  ++GK       + 
Sbjct: 56  PLDPLDTNQFTQQLVQFAGVEQQLKTNDALSQLVTLQQTTQATQALGFVGKTALVDGSTA 115

Query: 98  SGVVNAIQVSSTGLTAITVDNT 119
           +   ++        +  TVD T
Sbjct: 116 TMKNSSATWHLNVPSDSTVDIT 137


>gi|163749771|ref|ZP_02157017.1| putative transporter [Shewanella benthica KT99]
 gi|161330584|gb|EDQ01542.1| putative transporter [Shewanella benthica KT99]
          Length = 576

 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++ + QL+ FS +E   + N  L   L    L Q S  IGK +  +            
Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVLKQESVLIGKTLKGSGFR--------A 317

Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
           +    + AI  D  EI    G  +
Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341


>gi|157376094|ref|YP_001474694.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318468|gb|ABV37566.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++ + QL+ FS +E   + N  L   L    + Q S  IGK +  A            
Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVVKQESVLIGKTLKGAGFR--------A 317

Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
           +    + AI  D  E+    G  +
Sbjct: 318 LFDAAVVAIRRDGEEVSGKLGEVV 341


>gi|157376121|ref|YP_001474721.1| TrkA domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|157318495|gb|ABV37593.1| TrkA-C domain protein [Shewanella sediminis HAW-EB3]
          Length = 575

 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 51  VAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTG 110
           V QL+ FS +E   + N  L   L    + Q S  IGK +  A            +    
Sbjct: 271 VMQLSQFSGLEMFAEKNGLLDSNLTEVVVRQESILIGKTLKGAGFR--------ALFDGA 322

Query: 111 LTAITVDNTEIPITTGIRI 129
           + AI  D  +I    G  +
Sbjct: 323 VVAIRRDGEDISGKLGEVV 341


>gi|209884349|ref|YP_002288206.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5]
 gi|209872545|gb|ACI92341.1| flagellar hook capping protein [Oligotropha carboxidovorans OM5]
          Length = 239

 Score = 40.4 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 5   TEVNPTQQEFSKSKSKKTLGQDA----FLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           T      Q  + +KS  + G       FL LL TQ+++Q+P +P+  ++   QL  F+Q+
Sbjct: 12  TSAGAAAQNNTSTKSSSSTGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAQV 71

Query: 61  EQSVQMNSTLQELLKSN---NLAQASSYIGKNITNADGS 96
           EQ ++ N  L  L+         QA  ++G+ I+    +
Sbjct: 72  EQQLKANDQLSALVALQKTAQSTQALGFVGQTISVDGST 110


>gi|115523065|ref|YP_779976.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
 gi|115517012|gb|ABJ04996.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53]
          Length = 243

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQ-DAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQ 62
           N   +      S  K+         FL LL TQ+++Q+P +P+  ++   QL  F+ +EQ
Sbjct: 16  NPNYSANSSSSSSGKTSGIADNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQ 75

Query: 63  SVQMNSTLQELLKSN---NLAQASSYIGKNITNADGSI 97
            ++ NS L+ L+K        QA +++G        + 
Sbjct: 76  QLKSNSQLEALVKLQTGAQATQALNFVGATAIVDGATT 113


>gi|85713553|ref|ZP_01044543.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A]
 gi|85699457|gb|EAQ37324.1| Flagellar hook capping protein [Nitrobacter sp. Nb-311A]
          Length = 230

 Score = 39.6 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQD--AFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQME 61
            T +  +    + +    TL  +   FL LL TQ+++Q+P +P+  ++   QL  F+ +E
Sbjct: 16  TTALPASSPGSAATSDNNTLAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVE 75

Query: 62  QSVQMNSTLQELL---KSNNLAQASSYIGKNITNADGSIS 98
           Q ++ N  L  L+   ++    QA  ++GKN      + +
Sbjct: 76  QQLRTNDQLSNLVSMQQTAQATQALDFVGKNAVVDGSTAT 115


>gi|146342727|ref|YP_001207775.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. ORS278]
 gi|146195533|emb|CAL79560.1| putative flagellar basal-body rod modification protein FlgD
           [Bradyrhizobium sp. ORS278]
          Length = 231

 Score = 39.6 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKSNNLAQASSYIGKNITNADGSI 97
           P +P+  ++   QL  F+ +EQ ++ N  L  L    ++    QA +++GK         
Sbjct: 56  PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQT 115


>gi|205373383|ref|ZP_03226187.1| hypothetical protein Bcoam_08725 [Bacillus coahuilensis m4-4]
          Length = 114

 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 49  EQVAQLAVFSQMEQSVQMNSTLQELLK---SNNLAQASSYIGKNITNADGS---ISGVVN 102
           +   +   F+  + ++ +   + EL      N+L +AS+ IGK++T    +   +S +V+
Sbjct: 27  KFTGETVEFTLEDGTILLPENISELKSPQVGNSLVEASNLIGKSVTWLGENEEQLSSIVS 86

Query: 103 AIQVSSTGLTAITVDNTEIPITTGIRI 129
           ++      +   T D+ +I  +  + I
Sbjct: 87  SVSQKDGEIYIHTKDSQKIKASDLVTI 113


>gi|162147458|ref|YP_001601919.1| basal-body rod modification protein flgD [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545567|ref|YP_002277796.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786035|emb|CAP55617.1| putative basal-body rod modification protein flgD
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533244|gb|ACI53181.1| flagellar hook capping protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 258

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 37  KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSN---NLAQASSYIGKNITNA 93
           ++QDP+ PM +     +LA F+ +EQ VQ N+ L  L+  N    L   +S +GK  T  
Sbjct: 64  QNQDPSSPMSSDTFTQELAQFAGVEQQVQTNTNLSTLISLNEESQLNSDASLVGKTATAD 123

Query: 94  DGSISGVVNAIQVSSTGLTAITV 116
             ++     +  +S TG    TV
Sbjct: 124 STTLPLQNGSASLSFTGTAGETV 146


>gi|294140272|ref|YP_003556250.1| transporter, sodium/sulfate symporter family [Shewanella violacea
           DSS12]
 gi|293326741|dbj|BAJ01472.1| transporter, sodium/sulfate symporter family [Shewanella violacea
           DSS12]
          Length = 575

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++ + QL+ FS +E   + N  L   L    + Q S  I K +  +            
Sbjct: 267 DITKMM-QLSQFSGLEMFAEKNGLLDSNLTEVVIKQESVLIDKTLKGSGFR--------A 317

Query: 106 VSSTGLTAITVDNTEIPITTGIRI 129
           +    + AI  D  EI    G  +
Sbjct: 318 LFDAAVVAIRRDGEEISGKLGEVV 341


>gi|218461407|ref|ZP_03501498.1| flagellar basal body rod modification protein [Rhizobium etli Kim
           5]
          Length = 58

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 91  TNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRISN 131
            +ADG++ G V +++V S G+ A T D  +I +  GI +++
Sbjct: 3   ESADGTVKGTVESVKVYSDGIIATTTDGGKILVQAGITVAD 43


>gi|152980389|ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
 gi|151280466|gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp.
           Marseille]
          Length = 455

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++  +QLA   +M     +   L   L+            K +      + G++N++ 
Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVI----RMEGIINSMT 389

Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129
                   +   + +  I    G+++
Sbjct: 390 PQERAKPELIKASRKRRIATGAGVQV 415


>gi|193222405|emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog)
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++  +QLA   +M     +   L   L+            K +      + G++N++ 
Sbjct: 334 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 389

Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129
                   +   + +  I    G+++
Sbjct: 390 PQERAKPDLIKASRKRRIATGAGVQV 415


>gi|134095939|ref|YP_001101014.1| GTP-binding signal recognition particle protein [Herminiimonas
           arsenicoxydans]
          Length = 396

 Score = 37.7 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 46  KASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQ 105
             ++  +QLA   +M     +   L   L+            K +      + G++N++ 
Sbjct: 275 DLNDFKSQLAQMKKMGGMSNLMDKLPAQLQQAASGANMGMADKQVV----RMEGIINSMT 330

Query: 106 VSSTGLTAITVDNTE--IPITTGIRI 129
                   +   + +  I    G+++
Sbjct: 331 PQERAKPDLIKASRKRRIATGAGVQV 356


>gi|315125523|ref|YP_004067526.1| two-component system [Pseudoalteromonas sp. SM9913]
 gi|315014036|gb|ADT67374.1| probable two-component system [Pseudoalteromonas sp. SM9913]
          Length = 392

 Score = 37.3 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 29  LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQ------MNSTLQELLKSNNLA 80
            K ++ Q+K+Q+  +    S+   QL     + Q+        +N  + +L  ++   
Sbjct: 286 FKDIVAQLKNQNAMQTNAISQLTEQLEQLQSLMQTQNDLPASQLNEQITQLSHTSQQL 343


>gi|206895859|ref|YP_002246689.1| basal-body rod modification protein FlgD [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206738476|gb|ACI17554.1| basal-body rod modification protein FlgD [Coprothermobacter
          proteolyticus DSM 5265]
          Length = 97

 Score = 37.3 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 39/73 (53%)

Query: 7  VNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
           + +Q      +    L +D FLKLL+ ++K QDP  PM  +    Q+ + + +++ +++
Sbjct: 6  TSSSQGATGSEQKVPGLNRDDFLKLLLAELKAQDPLSPMDTNTMTTQITLLNVLQELIEI 65

Query: 67 NSTLQELLKSNNL 79
           + LQ L+ + + 
Sbjct: 66 KTMLQNLVSAKSQ 78


>gi|170039141|ref|XP_001847404.1| cytochrome P450 [Culex quinquefasciatus]
 gi|167862754|gb|EDS26137.1| cytochrome P450 [Culex quinquefasciatus]
          Length = 504

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 12  QEFSKSKSKKTLGQDAFLKLLITQIKH-QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTL 70
            +  + + K  + ++ F+ LLI Q+K+ +DP   +   E  AQ  VF  +  S   ++ +
Sbjct: 263 HDTVRQREKNNVQRNDFMNLLI-QLKNSEDPDARITMDEMAAQSFVF-FLAGSETSSTAM 320

Query: 71  QELLKSNNLAQASS 84
              +    + Q   
Sbjct: 321 VNCMYELAMNQDIQ 334


>gi|195953026|ref|YP_002121316.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932638|gb|ACG57338.1| flagellar hook assembly protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 240

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 22  TLGQDAFLKLLITQIKHQDPTEPMKAS-----EQVAQLAVFSQMEQSVQMNSTLQELLKS 76
            L   A++++  T++K+QDP                QL        + Q    L+ LL  
Sbjct: 41  NLSASAYMEIYTTELKYQDPASSSGNDVTSMINATVQLQQIGYYSIAQQQTQALEALLSQ 100

Query: 77  NNLAQASSYIGKNITNADG------SISGVVNAIQVSSTGLTAITVDNTEIP 122
                + + IGK    +        ++S  ++A    S     I   NT + 
Sbjct: 101 MTTLNSINMIGKEFVFSTSGIDTTKNVSYYLDAPTSMSNVSVEIMNGNTPVK 152


>gi|312374950|gb|EFR22408.1| hypothetical protein AND_15276 [Anopheles darlingi]
          Length = 906

 Score = 35.4 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 49  EQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS 84
           + + Q+    Q+ Q  Q+N  + +L + N L+Q  S
Sbjct: 657 QMINQMGQMGQLGQMNQLNQ-MNQLNQMNQLSQMQS 691


>gi|92116311|ref|YP_576040.1| flagellar hook capping protein [Nitrobacter hamburgensis X14]
 gi|91799205|gb|ABE61580.1| flagellar hook capping protein [Nitrobacter hamburgensis X14]
          Length = 230

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 41  PTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS-------YIGKNITNA 93
           P +P+  ++   QL  F+ +EQ ++ N  L  L+      Q ++       ++GKN    
Sbjct: 55  PLDPLDTNQFTQQLVQFAGVEQQLKTNDQLTSLVS----LQQTAQATQALDFVGKNAVVD 110

Query: 94  DGSIS 98
             + +
Sbjct: 111 GSTAT 115


>gi|194334553|ref|YP_002016413.1| TrkA-C domain-containing protein [Prosthecochloris aestuarii DSM
           271]
 gi|194312371|gb|ACF46766.1| TrkA-C domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 593

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 31  LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQE--LLKSNNLAQASSYIGK 88
           LL     +QD  +P++        A    +E  +  NS+L+   + +S   +Q  + +  
Sbjct: 290 LLTA---YQD-LQPVEVELFGGNGAGMHMVEGVIAYNSSLENKTIKESQFRSQYDAAV-V 344

Query: 89  NITNADGSISGVVNAIQVSSTGLTAITVD 117
            +      ISG + +I + +  +  +   
Sbjct: 345 AVLRGGERISGKIGSISLKAGDVLLLLAG 373


>gi|195476086|ref|XP_002085980.1| GE22675 [Drosophila yakuba]
 gi|194185762|gb|EDW99373.1| GE22675 [Drosophila yakuba]
          Length = 214

 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 39  QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS-YIGKNITNADGSI 97
           Q P +P    E +      S ME    M +T+Q ++++ N+ +    Y+G  IT +  + 
Sbjct: 70  QVPVQPQSKLESMMFTMQQSMMELMSFMKTTMQTIVQNQNMGEYIEYYLGHFITLSTMAA 129

Query: 98  SGVVNAIQVSSTGLTAITVDNT 119
           +G+ N I        A  V+N 
Sbjct: 130 AGLGNTISDILGITMATYVENG 151


>gi|195451169|ref|XP_002072798.1| GK13491 [Drosophila willistoni]
 gi|194168883|gb|EDW83784.1| GK13491 [Drosophila willistoni]
          Length = 603

 Score = 34.6 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 3   INTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVA-QLAVFSQME 61
           IN  V+   QE   + +   +   +FL         QDP    K ++ +A Q A  +++E
Sbjct: 481 INPRVSAQPQETGANNATSGIDAQSFLPKQWADGNWQDPQAVAKYNQVIADQKARINELE 540

Query: 62  QSVQMNSTLQELLKS 76
             +  ++ LQE ++S
Sbjct: 541 DLLTQHNILQETIQS 555


>gi|124802089|ref|XP_001347360.1| transcription factor with AP2 domain(s), putative [Plasmodium
            falciparum 3D7]
 gi|23494939|gb|AAN35273.1| transcription factor with AP2 domain(s), putative [Plasmodium
            falciparum 3D7]
          Length = 1597

 Score = 34.2 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 31   LLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKNI 90
            L+ TQ+ +Q        ++   Q+      + + QM + +   + +    Q ++ +   +
Sbjct: 1038 LMKTQLNNQ--MTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQMTNQVNNQMTNQM 1095

Query: 91   TNA 93
            TN 
Sbjct: 1096 TNQ 1098


>gi|118488401|gb|ABK96017.1| unknown [Populus trichocarpa]
          Length = 305

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 39  QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS----YIGKNITNAD 94
           QDPT+         Q      +E        L+ L +S++    +       G+ + +A 
Sbjct: 56  QDPTKGNDVDAIFNQARQLGAVEG------PLENLNQSSSSRSFTGTGRLLSGETVPSAP 109

Query: 95  GSISGVVNAIQVSSTGLTAITVDN 118
                VV+ I   + G      D 
Sbjct: 110 QQPEAVVHNIVFWTNG--FTVDDG 131


>gi|224118108|ref|XP_002331560.1| predicted protein [Populus trichocarpa]
 gi|222873784|gb|EEF10915.1| predicted protein [Populus trichocarpa]
          Length = 309

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 12/84 (14%)

Query: 39  QDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASS----YIGKNITNAD 94
           QDPT+         Q      +E        L+ L +S++    +       G+ + +A 
Sbjct: 56  QDPTKGNDVDAIFNQARQLGAVEG------PLENLNQSSSSRSFTGTGRLLSGETVPSAP 109

Query: 95  GSISGVVNAIQVSSTGLTAITVDN 118
                VV+ I   + G      D 
Sbjct: 110 QQPEAVVHNIVFWTNG--FTVDDG 131


>gi|255027495|ref|ZP_05299481.1| flagellar basal body rod modification protein [Listeria
           monocytogenes FSL J2-003]
          Length = 77

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 59  QMEQSVQMNSTLQELLKSNNLAQASSYIGKN---ITNADGSISGVVNAIQVSSTGLTA-I 114
           Q+         L E  +++ L  A ++IGK+   ++     ISG V ++Q ++ G+   +
Sbjct: 2   QVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKL 61

Query: 115 TVDNTEIPITTGIRIS 130
             +++ +P+T    I+
Sbjct: 62  KDNDSLVPMTYVTEIN 77


>gi|1335715|emb|CAA35521.1| unnamed protein product [Plasmodium falciparum]
          Length = 1256

 Score = 33.9 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 4   NTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQS 63
           N  +N       K++    +        +  Q+ +Q        ++   Q+      + +
Sbjct: 747 NGLMNNQMINQMKTQLNNQMTNQM-TNQMTNQMTNQ--MTNQMTNQMTNQMTNQMTNQMT 803

Query: 64  VQMNSTLQELLKSNNLAQASSYIGKNITNA 93
            Q+N+ +   + +    Q ++ +   + N 
Sbjct: 804 NQVNNQMTNQMTNQVNNQMTNQMTNQVNNQ 833


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.305    0.136    0.341 

Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 838,369,940
Number of Sequences: 14124377
Number of extensions: 25018235
Number of successful extensions: 97790
Number of sequences better than 10.0: 1490
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 93966
Number of HSP's gapped (non-prelim): 2698
length of query: 131
length of database: 4,842,793,630
effective HSP length: 96
effective length of query: 35
effective length of database: 3,486,853,438
effective search space: 122039870330
effective search space used: 122039870330
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.3 bits)
S2: 76 (33.9 bits)