RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A
{Streptococcus pyogenes} PDB: 3eif_A* (A:616-828)
Length = 213
Score = 61.1 bits (147), Expect = 5e-11
Identities = 7/108 (6%), Positives = 26/108 (24%), Gaps = 3/108 (2%)
Query: 20 KKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQEL---LKS 76
+ ++ + K Q + ++ + + ++E ++
Sbjct: 4 YDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIED 63
Query: 77 NNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPIT 124
++ + I S + AI+ +
Sbjct: 64 IESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDY 111
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 29.1 bits (65), Expect = 0.21
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGK 88
L QIK E + ++ + + + + L A G
Sbjct: 33 LVTREAQIKDWVENELEALKLEAEEIPS-EDQNEFLLERTREIHNEAESQLRAAQQQWGN 91
Query: 89 NITNADGSIS 98
+ D I+
Sbjct: 92 DFYKRDPRIA 101
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase,
structural genomics, structural genomics consortium,
SGC, alternative splicing; 1.60A {Homo sapiens} PDB:
3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
(A:97-281)
Length = 185
Score = 26.1 bits (56), Expect = 1.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 29 LKLLITQIKHQDPTEPMKASEQVAQLAVFSQMEQSVQM 66
L L+T+ DP++ + +E V L+ QME+ + M
Sbjct: 147 LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEKDIAM 184
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein
structure initiative; 3.15A
{Methanothermobacterthermautotrophicus} (A:)
Length = 97
Score = 25.6 bits (56), Expect = 2.7
Identities = 5/46 (10%), Positives = 19/46 (41%)
Query: 62 QSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVS 107
+ + + + +++ +GK + ++ + G V ++V
Sbjct: 4 SHHHHHHSSGLVPRGSHMRIVEEMVGKEVLDSSAKVIGKVKDVEVD 49
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation,
oxidoreductase, heparin binding, heparin-binding,
oxidative stress, antioxidant; 1.70A {Homo sapiens} (A:)
Length = 222
Score = 25.5 bits (55), Expect = 2.8
Identities = 9/78 (11%), Positives = 16/78 (20%), Gaps = 15/78 (19%)
Query: 55 AVFSQMEQSVQMNSTLQELLKSNNLAQASSYIGKN---------------ITNADGSISG 99
S S K + Q + + A ++G
Sbjct: 3 GEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGTLHAACQVQPSATLDAAQPRVTG 62
Query: 100 VVNAIQVSSTGLTAITVD 117
VV Q++
Sbjct: 63 VVLFRQLAPRAKLDAFFA 80
>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase;
structural genomics, PSI-2, protein structure
initiative; 1.90A {Agrobacterium tumefaciens str} (A:)
Length = 380
Score = 25.0 bits (54), Expect = 3.5
Identities = 12/52 (23%), Positives = 16/52 (30%)
Query: 79 LAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTEIPITTGIRIS 130
L SYI + G G + A +V A+ VD I
Sbjct: 252 LWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIH 303
>2c9v_A Superoxide dismutase [CU-ZN]; oxidoreductase, acetylation,
amyotrophic lateral sclerosis, antioxidant, copper,
disease mutation, human Cu; HET: SO4; 1.07A {Homo
sapiens} (A:)
Length = 153
Score = 24.7 bits (53), Expect = 4.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
DG + G++N Q S G + +
Sbjct: 9 KGDGPVQGIINFEQKESNGPVKVWGSIKGLT 39
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR;
2.10A {Homo sapiens} (A:)
Length = 237
Score = 24.4 bits (52), Expect = 5.2
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 25 QDAFLKLLITQIKHQDPTEPMK-------------ASEQVAQLAVFSQMEQSVQMNSTLQ 71
+ L I + + + Q+ + F ++ ++++ LQ
Sbjct: 171 RSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQ 230
Query: 72 ELLKSNN 78
E+L +
Sbjct: 231 EMLLGGS 237
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} (A:)
Length = 244
Score = 24.5 bits (52), Expect = 5.6
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 12/63 (19%)
Query: 25 QDAFLKLLITQIK--HQDPTEPMK----------ASEQVAQLAVFSQMEQSVQMNSTLQE 72
Q+ L I+ H D K + + +N+
Sbjct: 178 QEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPP 237
Query: 73 LLK 75
L K
Sbjct: 238 LYK 240
>1xtm_B Hypothetical superoxide dismutase-like protein YOJM; SOD,
Cu-Zn SOD, SOD-like, superoxide dismutase mutants,
structural genomics; 1.60A {Bacillus subtilis} PDB:
1xtl_B 1s4i_B 1u3n_A (B:)
Length = 175
Score = 23.9 bits (51), Expect = 7.3
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVD 117
+ N +G G + + GL I +
Sbjct: 26 LVNREGKAVGFIEIKESDDEGLD-IHIS 52
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A
{Schistosoma mansoni} (A:)
Length = 156
Score = 24.0 bits (51), Expect = 7.5
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 92 NADGSISGVVNAIQVSSTGLTAITVDNTEIP 122
+ GVV Q + G + + + +
Sbjct: 11 TGTAGVKGVVKFTQETDNGPVHVHAEFSGLK 41
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core,
antioxidant, metal binding, greek KEY beta barrel,
oxidoreductase; 1.63A {Mycobacterium tuberculosis} (A:)
Length = 208
Score = 23.9 bits (51), Expect = 8.2
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 90 ITNADGSISGVVNAIQVSSTGLTAITVDN 118
+T DG+ + I
Sbjct: 44 LTAPDGTKVATAKFEFANGYATVTIATTG 72
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.307 0.121 0.306
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 732,818
Number of extensions: 24774
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 17
Length of query: 131
Length of database: 4,956,049
Length adjustment: 78
Effective length of query: 53
Effective length of database: 2,319,259
Effective search space: 122920727
Effective search space used: 122920727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.8 bits)