BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780520|ref|YP_003064933.1| flagellar basal body rod
modification protein [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 131

 Score =  261 bits (667), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60
           MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM
Sbjct: 1   MEINTEVNPTQQEFSKSKSKKTLGQDAFLKLLITQIKHQDPTEPMKASEQVAQLAVFSQM 60

Query: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120
           EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE
Sbjct: 61  EQSVQMNSTLQELLKSNNLAQASSYIGKNITNADGSISGVVNAIQVSSTGLTAITVDNTE 120

Query: 121 IPITTGIRISN 131
           IPITTGIRISN
Sbjct: 121 IPITTGIRISN 131


>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 392

 Score = 24.6 bits (52), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 89  NITNADGSISGVVNAIQVSSTGLTAI 114
           NI  +DG +  V+N  ++   GLTAI
Sbjct: 290 NIIQSDGFLENVINIAKILFEGLTAI 315


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 21.9 bits (45), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 62  QSVQMNSTLQELLKSNNLAQA 82
           QS++MN  L+E+ K+ N +Q 
Sbjct: 553 QSIEMNRLLREMEKNPNSSQC 573


>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 494

 Score = 20.8 bits (42), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 37  KHQDPTEPMKASEQVAQLAVFSQMEQSVQMNSTLQELLKSNNLAQ 81
           K ++ + P ++ E ++   V   ++QS Q+ + +Q ++K  NLA+
Sbjct: 139 KKRESSSP-RSKENISVTIVTEMIQQSSQVVADIQSVVKGVNLAR 182


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.307    0.121    0.306 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,955
Number of Sequences: 1233
Number of extensions: 1981
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 328,796
effective HSP length: 65
effective length of query: 66
effective length of database: 248,651
effective search space: 16410966
effective search space used: 16410966
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 34 (17.7 bits)