Query gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter asiaticus str. psy62] Match_columns 153 No_of_seqs 103 out of 135 Neff 4.9 Searched_HMMs 13730 Date Wed Jun 1 10:03:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780521.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vpza_ b.151.1.1 (A:) Carbon 88.2 0.55 4E-05 24.7 5.6 39 4-42 3-48 (57) 2 d1ulea_ b.29.1.3 (A:) Galectin 45.8 8.9 0.00065 16.6 4.1 36 3-38 11-48 (150) 3 d1hlca_ b.29.1.3 (A:) S-lac le 35.8 13 0.00092 15.5 3.9 30 6-35 6-35 (129) 4 d1rutx4 g.39.1.3 (X:114-146) L 30.7 9.3 0.00068 16.4 1.4 21 7-27 7-29 (33) 5 d1yoxa1 b.82.5.2 (A:5-244) Hyp 26.2 18 0.0013 14.5 2.6 20 4-23 13-33 (240) 6 d1yb5a2 c.2.1.1 (A:121-294) Qu 25.8 12 0.00087 15.7 1.3 13 8-20 25-37 (174) 7 d1qora2 c.2.1.1 (A:113-291) Qu 24.5 12 0.00084 15.8 1.0 13 8-20 25-37 (179) 8 d1v3va2 c.2.1.1 (A:113-294) Le 23.8 12 0.00088 15.7 1.0 13 8-20 26-38 (182) 9 d1kyza2 c.66.1.12 (A:120-362) 22.8 21 0.0015 14.1 3.5 51 9-80 168-218 (243) 10 d1a78a_ b.29.1.3 (A:) Galectin 20.7 23 0.0017 13.8 4.6 30 5-34 8-37 (134) No 1 >d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=88.17 E-value=0.55 Score=24.68 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=31.7 Q ss_pred CEEEEECCCCEEEEEEEE----EE-ECCEEEEEEEC--CCCEEEHH Q ss_conf 658998789889981026----74-18848999972--65223157 Q gi|254780521|r 4 PLRISLKAGERIFLNGAV----VR-VNNKVILELLN--DITFILEH 42 (153) Q Consensus 4 ~Lkl~LKpgERi~INGAV----i~-~drr~~l~i~n--~a~iLre~ 42 (153) =|.|+-|+||.|+||+-+ +. .++.++|-|+. +++|+|+- T Consensus 3 MLvLtRk~gEsI~Igd~I~i~V~~i~g~~VrlGI~AP~~v~I~R~E 48 (57) T d1vpza_ 3 MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREE 48 (57) T ss_dssp CEEEEEETTCEEEETTTEEEEEEEEETTEEEEEEEEETTSCEEEHH T ss_pred EEEEEEECCCEEEECCCEEEEEEEECCCEEEEEEECCCCCCEEHHH T ss_conf 0799601799899799989999997399899999889998194999 No 2 >d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]} Probab=45.83 E-value=8.9 Score=16.57 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=27.5 Q ss_pred CCEEEEECCCCEEEEEEEEEE-ECCEEEEEEECC-CCE Q ss_conf 865899878988998102674-188489999726-522 Q gi|254780521|r 3 SPLRISLKAGERIFLNGAVVR-VNNKVILELLND-ITF 38 (153) Q Consensus 3 s~Lkl~LKpgERi~INGAVi~-~drr~~l~i~n~-a~i 38 (153) ..|.-.||||--|+|.|.+.. +..+.++-+++. ..| T Consensus 11 ~~l~~~~~~g~~i~i~g~~~~~~~~~~~iNl~~~~~DI 48 (150) T d1ulea_ 11 VKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENI 48 (150) T ss_dssp EEEEEEECTTCEEEEECSCBCTTCCCEEEEEECTTCCE T ss_pred EECCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCE T ss_conf 66568975994999998852899985899926899999 No 3 >d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId: 9606]} Probab=35.77 E-value=13 Score=15.55 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=24.2 Q ss_pred EEEECCCCEEEEEEEEEEECCEEEEEEECC Q ss_conf 899878988998102674188489999726 Q gi|254780521|r 6 RISLKAGERIFLNGAVVRVNNKVILELLND 35 (153) Q Consensus 6 kl~LKpgERi~INGAVi~~drr~~l~i~n~ 35 (153) .+.|+||-++.|.|.+..+..+-++-+.++ T Consensus 6 n~~l~~G~~i~v~G~~~~~~~rF~INl~~g 35 (129) T d1hlca_ 6 NMDMKPGSTLKITGSIADGTDGFVINLGQG 35 (129) T ss_dssp EEEECTTCEEEEEEEECTTCCBEEEEEEEE T ss_pred ECCCCCCCEEEEEEEECCCCCEEEEEEECC T ss_conf 788688999999999789999899998859 No 4 >d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} Probab=30.72 E-value=9.3 Score=16.43 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=16.0 Q ss_pred EEECCCCEE-EEEEEEE-EECCE Q ss_conf 998789889-9810267-41884 Q gi|254780521|r 7 ISLKAGERI-FLNGAVV-RVNNK 27 (153) Q Consensus 7 l~LKpgERi-~INGAVi-~~drr 27 (153) -.|-||.|| ++||.+. +.|+. T Consensus 7 n~LVPGDRFHyvNG~lfCE~D~p 29 (33) T d1rutx4 7 NRLVPGDRFHYINGSLFCEHDRP 29 (33) T ss_dssp CBCCTTCEEEEETTEEEEGGGCC T ss_pred CCCCCCCEEEEECCEEEEECCCC T ss_conf 42257750678567798735886 No 5 >d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]} Probab=26.20 E-value=18 Score=14.49 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=14.1 Q ss_pred CEEEEECCCCEEEE-EEEEEE Q ss_conf 65899878988998-102674 Q gi|254780521|r 4 PLRISLKAGERIFL-NGAVVR 23 (153) Q Consensus 4 ~Lkl~LKpgERi~I-NGAVi~ 23 (153) -|+++|+|||.+++ .||.+- T Consensus 13 ~l~v~L~~ge~v~ae~GaMv~ 33 (240) T d1yoxa1 13 TVEIELDPGETVIAEAGAMNY 33 (240) T ss_dssp EEEEEECTTCEEEECTTCEEE T ss_pred EEEEEECCCCEEEEECCEEEE T ss_conf 799995899989997682799 No 6 >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Probab=25.81 E-value=12 Score=15.71 Aligned_cols=13 Identities=46% Similarity=0.887 Sum_probs=11.6 Q ss_pred EECCCCEEEEEEE Q ss_conf 9878988998102 Q gi|254780521|r 8 SLKAGERIFLNGA 20 (153) Q Consensus 8 ~LKpgERi~INGA 20 (153) .++||++++|+|| T Consensus 25 ~~~~g~~VlV~Ga 37 (174) T d1yb5a2 25 CVKAGESVLVHGA 37 (174) T ss_dssp CCCTTCEEEEETC T ss_pred CCCCCCEEEEEEC T ss_conf 8999998999844 No 7 >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Probab=24.52 E-value=12 Score=15.81 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=10.6 Q ss_pred EECCCCEEEEEEE Q ss_conf 9878988998102 Q gi|254780521|r 8 SLKAGERIFLNGA 20 (153) Q Consensus 8 ~LKpgERi~INGA 20 (153) .+||||.++|+|| T Consensus 25 ~l~~g~~Vlv~ga 37 (179) T d1qora2 25 EIKPDEQFLFHAA 37 (179) T ss_dssp CCCTTCEEEESST T ss_pred CCCCCCEEEEECC T ss_conf 8999998999805 No 8 >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Probab=23.83 E-value=12 Score=15.67 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=11.3 Q ss_pred EECCCCEEEEEEE Q ss_conf 9878988998102 Q gi|254780521|r 8 SLKAGERIFLNGA 20 (153) Q Consensus 8 ~LKpgERi~INGA 20 (153) .+|||++++|+|| T Consensus 26 ~v~~G~~VlV~ga 38 (182) T d1v3va2 26 GVKGGETVLVSAA 38 (182) T ss_dssp CCCSSCEEEESST T ss_pred CCCCCCEEEEEEC T ss_conf 9999988999967 No 9 >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Probab=22.78 E-value=21 Score=14.07 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=26.2 Q ss_pred ECCCCEEEEEEEEEEECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 878988998102674188489999726522315750797770465899999999999576796889999999 Q gi|254780521|r 9 LKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRR 80 (153) Q Consensus 9 LKpgERi~INGAVi~~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~ 80 (153) |+||-|++|...++..+. ++-..+....++-+++|.+.+...+.....|.. T Consensus 168 l~pgg~~li~d~~~~~~~---------------------~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ 218 (243) T d1kyza2 168 LPDNGKVIVAECILPVAP---------------------DSSLATKGVVHIDVIMLAHNPGGKERTQKEFED 218 (243) T ss_dssp CCSSSCEEEEECEECSSC---------------------CCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH T ss_pred CCCCCEEEEEEEEECCCC---------------------CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 698763799998734777---------------------885116789999999983478987689999999 No 10 >d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId: 38577]} Probab=20.70 E-value=23 Score=13.79 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.8 Q ss_pred EEEEECCCCEEEEEEEEEEECCEEEEEEEC Q ss_conf 589987898899810267418848999972 Q gi|254780521|r 5 LRISLKAGERIFLNGAVVRVNNKVILELLN 34 (153) Q Consensus 5 Lkl~LKpgERi~INGAVi~~drr~~l~i~n 34 (153) ..+.|+||-.+.|.|.|.-...+-++-+.. T Consensus 8 ~~~gL~~G~~i~i~G~~~~~~~~F~INl~~ 37 (134) T d1a78a_ 8 TNLNLKPGHCVEIKGSIPPDCKGFAVNLGE 37 (134) T ss_dssp EEEEECTTEEEEEEEECCTTCSEEEEEEEE T ss_pred ECCCCCCCCEEEEEEEECCCCCEEEEEEEC T ss_conf 728987698999999978999989999875 Done!