Query         gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 153
No_of_seqs    103 out of 135
Neff          4.9 
Searched_HMMs 13730
Date          Wed Jun  1 10:03:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780521.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1vpza_ b.151.1.1 (A:) Carbon   88.2    0.55   4E-05   24.7   5.6   39    4-42      3-48  (57)
  2 d1ulea_ b.29.1.3 (A:) Galectin  45.8     8.9 0.00065   16.6   4.1   36    3-38     11-48  (150)
  3 d1hlca_ b.29.1.3 (A:) S-lac le  35.8      13 0.00092   15.5   3.9   30    6-35      6-35  (129)
  4 d1rutx4 g.39.1.3 (X:114-146) L  30.7     9.3 0.00068   16.4   1.4   21    7-27      7-29  (33)
  5 d1yoxa1 b.82.5.2 (A:5-244) Hyp  26.2      18  0.0013   14.5   2.6   20    4-23     13-33  (240)
  6 d1yb5a2 c.2.1.1 (A:121-294) Qu  25.8      12 0.00087   15.7   1.3   13    8-20     25-37  (174)
  7 d1qora2 c.2.1.1 (A:113-291) Qu  24.5      12 0.00084   15.8   1.0   13    8-20     25-37  (179)
  8 d1v3va2 c.2.1.1 (A:113-294) Le  23.8      12 0.00088   15.7   1.0   13    8-20     26-38  (182)
  9 d1kyza2 c.66.1.12 (A:120-362)   22.8      21  0.0015   14.1   3.5   51    9-80    168-218 (243)
 10 d1a78a_ b.29.1.3 (A:) Galectin  20.7      23  0.0017   13.8   4.6   30    5-34      8-37  (134)

No 1  
>d1vpza_ b.151.1.1 (A:) Carbon storage regulator homolog, CsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.17  E-value=0.55  Score=24.68  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CEEEEECCCCEEEEEEEE----EE-ECCEEEEEEEC--CCCEEEHH
Q ss_conf             658998789889981026----74-18848999972--65223157
Q gi|254780521|r    4 PLRISLKAGERIFLNGAV----VR-VNNKVILELLN--DITFILEH   42 (153)
Q Consensus         4 ~Lkl~LKpgERi~INGAV----i~-~drr~~l~i~n--~a~iLre~   42 (153)
                      =|.|+-|+||.|+||+-+    +. .++.++|-|+.  +++|+|+-
T Consensus         3 MLvLtRk~gEsI~Igd~I~i~V~~i~g~~VrlGI~AP~~v~I~R~E   48 (57)
T d1vpza_           3 MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREE   48 (57)
T ss_dssp             CEEEEEETTCEEEETTTEEEEEEEEETTEEEEEEEEETTSCEEEHH
T ss_pred             EEEEEEECCCEEEECCCEEEEEEEECCCEEEEEEECCCCCCEEHHH
T ss_conf             0799601799899799989999997399899999889998194999


No 2  
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]}
Probab=45.83  E-value=8.9  Score=16.57  Aligned_cols=36  Identities=8%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             CCEEEEECCCCEEEEEEEEEE-ECCEEEEEEECC-CCE
Q ss_conf             865899878988998102674-188489999726-522
Q gi|254780521|r    3 SPLRISLKAGERIFLNGAVVR-VNNKVILELLND-ITF   38 (153)
Q Consensus         3 s~Lkl~LKpgERi~INGAVi~-~drr~~l~i~n~-a~i   38 (153)
                      ..|.-.||||--|+|.|.+.. +..+.++-+++. ..|
T Consensus        11 ~~l~~~~~~g~~i~i~g~~~~~~~~~~~iNl~~~~~DI   48 (150)
T d1ulea_          11 VKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENI   48 (150)
T ss_dssp             EEEEEEECTTCEEEEECSCBCTTCCCEEEEEECTTCCE
T ss_pred             EECCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCE
T ss_conf             66568975994999998852899985899926899999


No 3  
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.77  E-value=13  Score=15.55  Aligned_cols=30  Identities=13%  Similarity=0.392  Sum_probs=24.2

Q ss_pred             EEEECCCCEEEEEEEEEEECCEEEEEEECC
Q ss_conf             899878988998102674188489999726
Q gi|254780521|r    6 RISLKAGERIFLNGAVVRVNNKVILELLND   35 (153)
Q Consensus         6 kl~LKpgERi~INGAVi~~drr~~l~i~n~   35 (153)
                      .+.|+||-++.|.|.+..+..+-++-+.++
T Consensus         6 n~~l~~G~~i~v~G~~~~~~~rF~INl~~g   35 (129)
T d1hlca_           6 NMDMKPGSTLKITGSIADGTDGFVINLGQG   35 (129)
T ss_dssp             EEEECTTCEEEEEEEECTTCCBEEEEEEEE
T ss_pred             ECCCCCCCEEEEEEEECCCCCEEEEEEECC
T ss_conf             788688999999999789999899998859


No 4  
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.72  E-value=9.3  Score=16.43  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=16.0

Q ss_pred             EEECCCCEE-EEEEEEE-EECCE
Q ss_conf             998789889-9810267-41884
Q gi|254780521|r    7 ISLKAGERI-FLNGAVV-RVNNK   27 (153)
Q Consensus         7 l~LKpgERi-~INGAVi-~~drr   27 (153)
                      -.|-||.|| ++||.+. +.|+.
T Consensus         7 n~LVPGDRFHyvNG~lfCE~D~p   29 (33)
T d1rutx4           7 NRLVPGDRFHYINGSLFCEHDRP   29 (33)
T ss_dssp             CBCCTTCEEEEETTEEEEGGGCC
T ss_pred             CCCCCCCEEEEECCEEEEECCCC
T ss_conf             42257750678567798735886


No 5  
>d1yoxa1 b.82.5.2 (A:5-244) Hypothetical protein PA3696 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.20  E-value=18  Score=14.49  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=14.1

Q ss_pred             CEEEEECCCCEEEE-EEEEEE
Q ss_conf             65899878988998-102674
Q gi|254780521|r    4 PLRISLKAGERIFL-NGAVVR   23 (153)
Q Consensus         4 ~Lkl~LKpgERi~I-NGAVi~   23 (153)
                      -|+++|+|||.+++ .||.+-
T Consensus        13 ~l~v~L~~ge~v~ae~GaMv~   33 (240)
T d1yoxa1          13 TVEIELDPGETVIAEAGAMNY   33 (240)
T ss_dssp             EEEEEECTTCEEEECTTCEEE
T ss_pred             EEEEEECCCCEEEEECCEEEE
T ss_conf             799995899989997682799


No 6  
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.81  E-value=12  Score=15.71  Aligned_cols=13  Identities=46%  Similarity=0.887  Sum_probs=11.6

Q ss_pred             EECCCCEEEEEEE
Q ss_conf             9878988998102
Q gi|254780521|r    8 SLKAGERIFLNGA   20 (153)
Q Consensus         8 ~LKpgERi~INGA   20 (153)
                      .++||++++|+||
T Consensus        25 ~~~~g~~VlV~Ga   37 (174)
T d1yb5a2          25 CVKAGESVLVHGA   37 (174)
T ss_dssp             CCCTTCEEEEETC
T ss_pred             CCCCCCEEEEEEC
T ss_conf             8999998999844


No 7  
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=24.52  E-value=12  Score=15.81  Aligned_cols=13  Identities=23%  Similarity=0.534  Sum_probs=10.6

Q ss_pred             EECCCCEEEEEEE
Q ss_conf             9878988998102
Q gi|254780521|r    8 SLKAGERIFLNGA   20 (153)
Q Consensus         8 ~LKpgERi~INGA   20 (153)
                      .+||||.++|+||
T Consensus        25 ~l~~g~~Vlv~ga   37 (179)
T d1qora2          25 EIKPDEQFLFHAA   37 (179)
T ss_dssp             CCCTTCEEEESST
T ss_pred             CCCCCCEEEEECC
T ss_conf             8999998999805


No 8  
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}
Probab=23.83  E-value=12  Score=15.67  Aligned_cols=13  Identities=31%  Similarity=0.682  Sum_probs=11.3

Q ss_pred             EECCCCEEEEEEE
Q ss_conf             9878988998102
Q gi|254780521|r    8 SLKAGERIFLNGA   20 (153)
Q Consensus         8 ~LKpgERi~INGA   20 (153)
                      .+|||++++|+||
T Consensus        26 ~v~~G~~VlV~ga   38 (182)
T d1v3va2          26 GVKGGETVLVSAA   38 (182)
T ss_dssp             CCCSSCEEEESST
T ss_pred             CCCCCCEEEEEEC
T ss_conf             9999988999967


No 9  
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=22.78  E-value=21  Score=14.07  Aligned_cols=51  Identities=12%  Similarity=0.119  Sum_probs=26.2

Q ss_pred             ECCCCEEEEEEEEEEECCEEEEEEECCCCEEEHHHCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             878988998102674188489999726522315750797770465899999999999576796889999999
Q gi|254780521|r    9 LKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRR   80 (153)
Q Consensus         9 LKpgERi~INGAVi~~drr~~l~i~n~a~iLre~dil~~eeA~TP~rrlYf~vQ~mll~p~~~~~~~~~~~~   80 (153)
                      |+||-|++|...++..+.                     ++-..+....++-+++|.+.+...+.....|..
T Consensus       168 l~pgg~~li~d~~~~~~~---------------------~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~  218 (243)
T d1kyza2         168 LPDNGKVIVAECILPVAP---------------------DSSLATKGVVHIDVIMLAHNPGGKERTQKEFED  218 (243)
T ss_dssp             CCSSSCEEEEECEECSSC---------------------CCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH
T ss_pred             CCCCCEEEEEEEEECCCC---------------------CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             698763799998734777---------------------885116789999999983478987689999999


No 10 
>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId: 38577]}
Probab=20.70  E-value=23  Score=13.79  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=23.8

Q ss_pred             EEEEECCCCEEEEEEEEEEECCEEEEEEEC
Q ss_conf             589987898899810267418848999972
Q gi|254780521|r    5 LRISLKAGERIFLNGAVVRVNNKVILELLN   34 (153)
Q Consensus         5 Lkl~LKpgERi~INGAVi~~drr~~l~i~n   34 (153)
                      ..+.|+||-.+.|.|.|.-...+-++-+..
T Consensus         8 ~~~gL~~G~~i~i~G~~~~~~~~F~INl~~   37 (134)
T d1a78a_           8 TNLNLKPGHCVEIKGSIPPDCKGFAVNLGE   37 (134)
T ss_dssp             EEEEECTTEEEEEEEECCTTCSEEEEEEEE
T ss_pred             ECCCCCCCCEEEEEEEECCCCCEEEEEEEC
T ss_conf             728987698999999978999989999875


Done!