RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780521|ref|YP_003064934.1| flagellar biosynthesis
repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
         (153 letters)



>gnl|CDD|35002 COG5443, FlbT, Flagellar biosynthesis regulator FlbT [Cell motility
           and secretion].
          Length = 148

 Score =  132 bits (333), Expect = 5e-32
 Identities = 63/148 (42%), Positives = 95/148 (64%)

Query: 1   MNSPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLI 60
           M S LRISLK GE+IF+NGAV+RV+ KV LELLND+TF+LE+HV++ ++A TP  QLY I
Sbjct: 1   MKSTLRISLKPGEKIFINGAVLRVDRKVALELLNDVTFLLENHVLQPDQATTPLRQLYFI 60

Query: 61  VQMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
            QM+ + P   +   ++ R+ +N+L    ++ +++ ALK I+ L+ +GR FEALK IR L
Sbjct: 61  AQMMLINPAGAEQATEMFRKSLNMLLACFKDAEILAALKRIDGLVMAGRAFEALKAIRGL 120

Query: 121 SFIDNIDPNGSAIFASIFQSIRQEIKSW 148
             I++          +  +  R+    W
Sbjct: 121 YPIEDEILGAQEHVPATVEQGRKAGAPW 148


>gnl|CDD|37588 KOG2377, KOG2377, KOG2377, Uncharacterized conserved protein
           [Function unknown].
          Length = 657

 Score = 28.9 bits (64), Expect = 0.67
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 54  FHQLYLIVQMIFLVPTKKD--YLIDLGRRYINI-LFNIIQNQQLILALKNIESLINSGRF 110
           F+ L+  +Q   L  +K     L+ L   Y      ++   ++L    + IE L++ G+ 
Sbjct: 528 FYMLHQFLQYHVLSDSKPVACLLLSLESFYPPAHQLSLDMLKRLSAHDEIIEVLLSKGQV 587

Query: 111 FEALKNIRTLSFIDNIDP----------NGSAIFASIFQSIRQEIKSWKST 151
             AL+  R +   DN+              + +F +IF+   Q  +  + T
Sbjct: 588 LAALRFARGIGGHDNVSARKFLEAAKQTEDNMLFYTIFRFFEQRNQRLRET 638


>gnl|CDD|31086 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase
           [Lipid metabolism].
          Length = 385

 Score = 28.2 bits (63), Expect = 1.0
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 96  LALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFASIFQSIRQEIKS 147
           +AL N ESL+ +G              +  +D   +AIF  +    ++ +K 
Sbjct: 116 IALANKESLVTAGELVMDAAKESGAQLLP-VDSEHNAIFQCLQGETQKGVKK 166


>gnl|CDD|145153 pfam01837, DUF39, Domain of unknown function DUF39.  This presumed
           domain is about is about 320 residues long. It is found
           in proteins that have two C-terminal pfam00571 domains.
           The function of this domain is unknown. One member has
           been misannotated as an inosine monophosphate
           dehydrogenase based on the similarity to the CBS
           domains.
          Length = 300

 Score = 27.1 bits (61), Expect = 2.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 2   NSPLRISLKAGERIFLNGAV 21
           N P   ++  G RIFL GA 
Sbjct: 184 NDPGLRTIGIGTRIFLGGAE 203


>gnl|CDD|145059 pfam01706, FliG_C, FliG C-terminal domain.  FliG is a component of
           the flageller rotor, present in about 25 copies per
           flagellum. This domain functions specifically in motor
           rotation.
          Length = 110

 Score = 25.9 bits (58), Expect = 4.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 72  DYLIDLGRRYINILFNIIQNQQLILALKN 100
           + L+ L  R I  L   +    L LALK 
Sbjct: 23  EDLVRLDDRDIQRLLREVDKDVLALALKG 51


>gnl|CDD|39703 KOG4503, KOG4503, KOG4503, Uncharacterized conserved membrane
           protein [Function unknown].
          Length = 230

 Score = 25.7 bits (56), Expect = 5.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 27  KVILELLNDITFILEHHVIREEEAITPFHQLYLIVQ 62
           K I+ L ND+ + +E      +  I      YLI +
Sbjct: 104 KFIVGLQNDVGYKMESRKAEIQHQIAECKTSYLINK 139


>gnl|CDD|34689 COG5085, COG5085, Predicted membrane protein [Function unknown].
          Length = 230

 Score = 25.7 bits (56), Expect = 5.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 27  KVILELLNDITFILEHHVIREEEAITPFHQLYLIVQ 62
           K I+ L ND+ + +E      +  I      YLI +
Sbjct: 104 KFIVGLQNDVGYKMESRKAEIQHQIAECKTSYLINK 139


>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian
           STARD1-STARD15 and related proteins.  This family
           includes the steroidogenic acute regulatory protein
           (StAR)-related lipid transfer (START) domains of
           mammalian STARD1-STARD15, and related domains, such as
           the START domain of the Arabidopsis homeobox protein
           GLABRA 2. The mammalian STARDs are grouped into 8
           subfamilies. This family belongs to the SRPBCC
           (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
           superfamily of proteins that bind hydrophobic ligands.
           SRPBCC domains have a deep hydrophobic ligand-binding
           pocket. For some members of this family, specific lipids
           that bind in this pocket are known; these include
           cholesterol (STARD1/STARD3/ STARD4/STARD5),
           25-hydroxycholesterol (STARD5), phosphatidylcholine
           (STARD2/ STARD7/STARD10), phosphatidylethanolamine
           (STARD10) and ceramides (STARD11). The START domain is
           found either alone or in association with other domains.
           Mammalian STARDs participate in the control of various
           cellular processes including lipid trafficking between
           intracellular compartments, lipid metabolism, and
           modulation of signaling events. Mutation or altered
           expression of STARDs is linked to diseases such as
           cancer, genetic disorders, and autoimmune disease. The
           Arabidopsis homeobox protein GLABRA 2 suppresses root
           hair formation in hairless epidermal root cells.
          Length = 193

 Score = 25.4 bits (56), Expect = 6.0
 Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 31/151 (20%)

Query: 20  AVVRVNNKVILELLNDITF-------ILEHHVIREEEAITPFHQLYLIVQMIFLVPTKKD 72
            V+  + + + ELL DI           E  VI E +  T    +Y   +  + V + +D
Sbjct: 45  GVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHT--DIIYYKTKPPWPV-SPRD 101

Query: 73  YLIDLGRRYINILFNIIQNQQLILALKNIES-------------LINSGRFFEALKNIRT 119
           ++    RR ++          +I++ K+++              +  SG   E L   +T
Sbjct: 102 FVYLRRRRKLD------DGTYVIVS-KSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKT 154

Query: 120 -LSFIDNIDPNGSAIFASIFQSIRQEIKSWK 149
            ++++  +DP GS   + +  + ++++ S+ 
Sbjct: 155 KVTYVLQVDPKGSIPKSLVNSAAKKQLASFL 185


>gnl|CDD|34452 COG4843, COG4843, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 179

 Score = 24.9 bits (54), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 82  INILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFI-DNID 127
           IN+L+  I   +LIL LK    L      FE +  +  LS + DN+D
Sbjct: 14  INVLYVTIYTVRLILTLKGYRYLAALVSVFEMIVYVVGLSLVLDNLD 60


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.326    0.142    0.395 

Gapped
Lambda     K      H
   0.267   0.0811    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,854,812
Number of extensions: 98342
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 17
Length of query: 153
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 67
Effective length of database: 4,405,363
Effective search space: 295159321
Effective search space used: 295159321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)