RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780521|ref|YP_003064934.1| flagellar biosynthesis
repressor FlbT [Candidatus Liberibacter asiaticus str. psy62]
(153 letters)
>gnl|CDD|179127 PRK00794, flbT, flagellar biosynthesis repressor FlbT; Reviewed.
Length = 132
Score = 126 bits (320), Expect = 2e-30
Identities = 51/118 (43%), Positives = 75/118 (63%)
Query: 3 SPLRISLKAGERIFLNGAVVRVNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQ 62
S L++SLK GERIF+NGAV+R + KV LELLND TF+ E V++ E+A TP QLY I Q
Sbjct: 2 SGLKLSLKPGERIFINGAVLRNDRKVSLELLNDATFLRERDVLQPEDATTPLRQLYFIAQ 61
Query: 63 MIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
++ + P + R + L + + ++ LK I+ L+ +GR++EALK +R L
Sbjct: 62 LMLIGPAGAEDARAEFARRLEQLLAVFTDPDILAGLKAIDELVEAGRYYEALKALRGL 119
>gnl|CDD|148792 pfam07378, FlbT, Flagellar protein FlbT. This family consists of
several FlbT proteins. FlbT is a post-transcriptional
regulator of flagellin. FlbT is associated with the 5'
untranslated region (UTR) of fljK (25 kDa flagellin)
mRNA and that this association requires a predicted loop
structure in the transcript. Mutations within this loop
abolish FlbT association and result in increased mRNA
stability. It is therefore thought that FlbT promotes
the degradation of flagellin mRNA by associating with
the 5' UTR.
Length = 126
Score = 107 bits (270), Expect = 1e-24
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 5 LRISLKAGERIFLNGAVVR-VNNKVILELLNDITFILEHHVIREEEAITPFHQLYLIVQM 63
L++SLK GERI +NGAV+R + + LE+ ND + E +++ E+A TP +LY VQ+
Sbjct: 1 LKLSLKPGERIIINGAVIRNGDRRSRLEIENDAPILREKDILQPEDATTPVRRLYFAVQL 60
Query: 64 IFLVPTKKDYLIDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTL 120
+ + P +D L + L + L L+ +GR+++ALK +R L
Sbjct: 61 MLIGPEDRDDARALFLELLEELSAAFADPDSRALLDEATELVLAGRYYKALKALRKL 117
>gnl|CDD|183748 PRK12791, flbT, flagellar biosynthesis repressor FlbT; Reviewed.
Length = 131
Score = 44.0 bits (104), Expect = 2e-05
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 4 PLRISLKAGERIFLNGAVVRVNNKVILELL--NDITFILEHHVIREEEAITPFHQLYLIV 61
PLR+ LK ERI + G V N+ L D + E ++ E A TP ++YL V
Sbjct: 2 PLRVELKPFERIVI-GQSVITNSDTRARFLIDGDAPILREKDILTAETADTPAKRVYLCV 60
Query: 62 QMIFLVPTKKDYLIDLGRRYINILFNIIQNQQLILAL-KNIESLINSGRFFEALKNIRTL 120
Q+++L Y Y+ ++ +I+ + + I + I +G ++ALK +R L
Sbjct: 61 QLMYLSNDIPAY----HGTYLGLIRELIEAVPSAWPIIEAINNHILNGDLYKALKELRKL 116
>gnl|CDD|162107 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 41 EHHVIREEEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINI 84
EH + + F+ +Y + Q F PT++ L DL + + ++
Sbjct: 726 EHDFLDAQFRYFSFYNMYAVTQGNFDYPTQQQLLYDLHQSFSSV 769
>gnl|CDD|180201 PRK05686, fliG, flagellar motor switch protein G; Validated.
Length = 339
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 74 LIDLGRRYINILFNIIQNQQLILALKN 100
L+DL R I L + N L LALK
Sbjct: 247 LVDLDDRSIQRLLREVDNDVLALALKG 273
>gnl|CDD|132689 TIGR03650, violacein_E, violacein biosynthesis enzyme VioE. This
enzyme catalyzes the third step in violacein
biosynthesis from a pair of Trp residues, as in
Chromobacterium violaceum, but the first step that
distinguishes that pathway from staurosporine (an
indolocarbazole antibiotic) biosynthesis.
Length = 184
Score = 26.8 bits (59), Expect = 2.2
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 48 EEAITPFHQLYLIVQMIFLVPTKKDYLIDLGRRYINI 84
++ PFH+L+L +D L LG R+I
Sbjct: 94 DDETGPFHELFL----------PQDVLRRLGARHIGR 120
>gnl|CDD|184503 PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 528
Score = 26.8 bits (60), Expect = 2.3
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 112 EALKNIR---TLSFIDNIDPNG 130
EAL+ + FIDN DP+G
Sbjct: 134 EALQPNSDGLNIHFIDNTDPDG 155
>gnl|CDD|183005 PRK11162, mltA, murein transglycosylase A; Provisional.
Length = 355
Score = 26.8 bits (60), Expect = 2.4
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 75 IDLGRRYINILFNIIQNQQLILALKNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIF 134
D G++Y + F Q L+ IN+G F E + IR S P +
Sbjct: 26 TDRGQQYKDGKFT--QPLSLVNQPNASGKPINAGDFAEQVNQIRNSS------PRLYGRY 77
Query: 135 ASIFQSIRQEIKS 147
++ + ++++ + +
Sbjct: 78 SNTYNAVQEWLLA 90
>gnl|CDD|149139 pfam07899, Frigida, Frigida-like protein. This family is composed
of plant proteins that are similar to FRIGIDA protein
expressed by Arabidopsis thaliana. This protein is
probably nuclear and is required for the regulation of
flowering time in the late-flowering phenotype. It is
known to increase RNA levels of flowering locus C.
Allelic variation at the FRIGIDA locus is a major
determinant of natural variation in flowering time.
Length = 294
Score = 26.1 bits (58), Expect = 3.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 101 IESLINSGRFFEALKNIRTLSFIDNIDP 128
IE LIN GR +A+ I +D P
Sbjct: 185 IEELINRGRQIDAVHFIYEFGLVDKFPP 212
>gnl|CDD|149034 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 77
Score = 25.3 bits (56), Expect = 6.9
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 90 QNQQLILAL-KNIESLINSGRFFEALKNIRTLSFIDNI 126
+ +Q I L +E+ +++G + EA +R L F++ +
Sbjct: 34 EVKQRIKELLAELEAALDAGDWEEAADLVRRLKFLEKL 71
>gnl|CDD|182075 PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.
Length = 120
Score = 25.2 bits (55), Expect = 8.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 73 YLIDLGRRYINILFNIIQNQQLILAL 98
++ G+ Y + + II+N L + L
Sbjct: 26 HISAEGQAYRDNVARIIKNAMLDIGL 51
>gnl|CDD|179219 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 24.9 bits (55), Expect = 8.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 31 ELLNDITFILEHHVIREEEAITPFHQLY 58
LL+ + ++E +PFH+ Y
Sbjct: 5 TLLSRERLGKKGKTSKDELGRSPFHKDY 32
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors.
Length = 402
Score = 24.8 bits (54), Expect = 9.4
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 76 DLGRRY---INILFNIIQNQQLILALKNIESLINSG 108
DL R +N+ FN ++ + LI+ALK++ ++SG
Sbjct: 290 DLEHRVPGNLNVSFNYVEGESLIMALKDLA--VSSG 323
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 24.7 bits (55), Expect = 9.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 13/39 (33%)
Query: 99 KNIESLINSGRFFEALKNIRTLSFIDNIDPNGSAIFASI 137
+ +ESLI +G F D++ PN +A+ AS+
Sbjct: 864 RVLESLIKAGAF-------------DSLGPNRAALLASL 889
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.326 0.142 0.395
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,541,342
Number of extensions: 163119
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 39
Length of query: 153
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,157,793
Effective search space: 282729924
Effective search space used: 282729924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)