HHsearch alignment for GI: 254780522 and conserved domain: COG1516
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones].
Probab=93.33 E-value=0.64 Score=25.49 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 269999997223797999999999999999999836--888399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKS--LPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~--~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
T Consensus 7 ~~aY~qn~V-~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E---~Ggeia~nL~~ 82 (132)
T COG1516 7 YQAYQQNQV-NTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYE---KGGEIAQNLDA 82 (132)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH---HCCHHHHHHHH
T ss_conf 999998888-30889999999999999999999999980267999899999999999999753976---26639998999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
T Consensus 83 LY~y~~~rL~~ANl~nd~~~i~eV~~ll~~l~ea 116 (132)
T COG1516 83 LYDYMVRRLVQANLKNDASKIDEVIGLLRELREA 116 (132)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988616899999999999999999