HHsearch alignment for GI: 254780522 and conserved domain: COG1516

>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones].
Probab=93.33  E-value=0.64  Score=25.49  Aligned_cols=107  Identities=13%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             269999997223797999999999999999999836--888399999999999999999999609889989899999999
Q gi|254780522|r    2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKS--LPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS   79 (114)
Q Consensus         2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~--~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis   79 (114)
T Consensus         7 ~~aY~qn~V-~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E---~Ggeia~nL~~   82 (132)
T COG1516           7 YQAYQQNQV-NTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYE---KGGEIAQNLDA   82 (132)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH---HCCHHHHHHHH
T ss_conf             999998888-30889999999999999999999999980267999899999999999999753976---26639998999


Q ss_pred             HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999-999547843127999999999951
Q gi|254780522|r   80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG  112 (114)
Q Consensus        80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G  112 (114)
T Consensus        83 LY~y~~~rL~~ANl~nd~~~i~eV~~ll~~l~ea  116 (132)
T COG1516          83 LYDYMVRRLVQANLKNDASKIDEVIGLLRELREA  116 (132)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999988616899999999999999999