Query gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 114
No_of_seqs 106 out of 148
Neff 5.5
Searched_HMMs 39220
Date Sun May 29 22:49:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780522.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12793 flaF flagellar biosyn 100.0 2.1E-42 0 270.9 15.2 114 1-114 1-115 (115)
2 pfam07309 FlaF Flagellar prote 100.0 1.8E-38 4.5E-43 247.7 15.2 111 2-113 3-113 (113)
3 PRK12794 flaF flagellar biosyn 100.0 4.3E-38 1.1E-42 245.4 15.2 111 2-114 5-116 (122)
4 COG5442 FlaF Flagellar biosynt 100.0 2.9E-33 7.4E-38 216.9 13.7 114 1-114 1-115 (115)
5 pfam02561 FliS Flagellar prote 96.1 0.11 2.9E-06 29.9 13.8 107 2-112 5-114 (122)
6 COG1516 FliS Flagellin-specifi 93.3 0.64 1.6E-05 25.5 12.9 107 2-112 7-116 (132)
7 PRK05685 fliS flagellar protei 85.4 2.9 7.5E-05 21.6 13.3 107 3-112 8-120 (131)
8 TIGR00444 mazG MazG family pro 63.2 6.5 0.00017 19.5 2.6 46 59-104 2-48 (253)
9 COG5040 BMH1 14-3-3 family pro 43.1 16 0.00042 17.2 2.0 58 4-62 181-239 (268)
10 smart00101 14_3_3 14-3-3 homol 38.0 31 0.0008 15.5 3.8 55 4-59 179-234 (244)
11 TIGR00439 ftsX putative protei 34.5 10 0.00026 18.4 -0.2 46 26-72 87-134 (314)
12 smart00351 PAX Paired Box doma 27.4 47 0.0012 14.4 2.5 24 65-88 14-37 (125)
13 pfam11921 DUF3439 Domain of un 27.0 11 0.00028 18.2 -1.1 19 76-94 4-22 (122)
14 TIGR01940 nqrE NADH:ubiquinone 23.2 51 0.0013 14.2 1.8 37 75-112 93-130 (203)
15 cd00131 PAX Paired Box domain 22.5 59 0.0015 13.9 2.2 24 65-88 14-37 (128)
16 PHA01159 hypothetical protein 21.5 41 0.001 14.8 1.0 19 63-81 73-91 (114)
17 pfam00292 PAX 'Paired box' dom 21.2 63 0.0016 13.7 2.2 24 65-88 14-37 (125)
18 COG3755 Uncharacterized protei 21.0 63 0.0016 13.7 3.7 45 15-60 40-85 (127)
No 1
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=100.00 E-value=2.1e-42 Score=270.91 Aligned_cols=114 Identities=45% Similarity=0.798 Sum_probs=110.9
Q ss_pred CHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 926-9999997223797999999999999999999836888399999999999999999999609889989899999999
Q gi|254780522|r 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 1 ~r~-~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
|+| +|++|+|+|+.+||++||++|+|++++|+.|+++|.++.++++||+||||||++|++||++|+|+||++||++|||
T Consensus 1 my~~sYae~~~ds~~~~Re~E~~al~r~~~~L~~a~~~~~~~~~~~eAl~~nrrlWt~~~~Dl~~~~N~LP~~LRa~lis 80 (115)
T PRK12793 1 MYQFSYAEVMEDSPASARERERQAFDRSIDLLEAARAKGAGSREAIEALLFTRRLWTTLIEDLGSPENALPEELRADLIS 80 (115)
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 93035999987553483999999999999999999876999799999999999999999998579879999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999954784312799999999995159
Q gi|254780522|r 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 80 L~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
||+||+|||++|+.+++.+|++||+||++||+|||
T Consensus 81 l~~fv~k~t~~v~~~~~~~~~~LIeIN~~I~~GLr 115 (115)
T PRK12793 81 IGIWVLKEADRIRQGESNNFAGLIEINTSIRDGLR 115 (115)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999999985885343069999999985773
No 2
>pfam07309 FlaF Flagellar protein FlaF. This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis.
Probab=100.00 E-value=1.8e-38 Score=247.69 Aligned_cols=111 Identities=35% Similarity=0.594 Sum_probs=106.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688839999999999999999999960988998989999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL~ 81 (114)
.++|+++++ ++.+||++||++|+++|++|+.|++++....+.++||+||+|||++|++||++|+|+||++||++|||||
T Consensus 3 ~~AY~~~~~-~~~t~Re~E~~~l~~~~~~L~~A~~~~~~~~~~~~AL~~N~rLWt~~~~dl~~~~N~LP~eLRa~lisL~ 81 (113)
T pfam07309 3 QSAYARVAQ-STATPREREAQALARATARLQQARKAGAAGREALEALHFNRKLWTIFAADLASPDNPLPQELRANLISLG 81 (113)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 888998874-3379499999999999999999986786739999999999999999999864988999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999995478431279999999999515
Q gi|254780522|r 82 LWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113 (114)
Q Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (114)
+||++||.+++.+++.+|++||+||++||+||
T Consensus 82 ~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GL 113 (113)
T pfam07309 82 LFVLKHTSKVLAGPADDLDPLIEINRAIADGL 113 (113)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999998087544178999999988309
No 3
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=100.00 E-value=4.3e-38 Score=245.43 Aligned_cols=111 Identities=27% Similarity=0.434 Sum_probs=103.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 26999999722379799999999999999999983688-83999999999999999999996098899898999999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~-~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~LisL 80 (114)
.++|+++.+. +.+||++||++|+++|++|+.|.++++ ++.++++||+||||||++|++||++|+|+||++||++||||
T Consensus 5 ~~AY~~~~~~-t~tpR~~E~~~~~~~t~~L~~a~~~~~~~~~~l~~AL~~N~rLWt~~~~dl~~~~N~LP~~LRa~lisL 83 (122)
T PRK12794 5 AQAYARTAQP-TRTPREIEYQALAKATRQLQDAQSNGPDGFAALAEALHFNRKLWSIFASDVASPDNPLPIELRANIANL 83 (122)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999987620-379499999999999999999987387327999999999999999999986698799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999954784312799999999995159
Q gi|254780522|r 81 GLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 81 ~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
|+||++||.+++.++ +++++|||||++||+||+
T Consensus 84 ~~fv~~~t~~vl~~~-~~l~~LI~IN~~I~~GL~ 116 (122)
T PRK12794 84 SEFVLKQSSKVLRKP-EKLTPLIEINRNIAAGLS 116 (122)
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC
T ss_conf 999999999998586-031289999999997653
No 4
>COG5442 FlaF Flagellar biosynthesis regulator FlaF [Cell motility and secretion]
Probab=100.00 E-value=2.9e-33 Score=216.86 Aligned_cols=114 Identities=46% Similarity=0.829 Sum_probs=110.6
Q ss_pred CHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 926-9999997223797999999999999999999836888399999999999999999999609889989899999999
Q gi|254780522|r 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 1 ~r~-~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
|+| +|+++|.++..+.+++|+++|+|.+.+|.+|++.+.++.+..+||+||+|||+.|++||.+|||+||.||||+|||
T Consensus 1 myqf~yadvm~~~va~akdRer~~ltRsiall~aa~a~~~~sre~IeAl~ftrrvW~~fieDl~~pdNqLp~ELRAnlIS 80 (115)
T COG5442 1 MYQFSYADVMEDGVASAKDRERQLLTRSIALLDAARAPGDDSREAIEALYFTRRVWTRFIEDLGSPDNQLPMELRANLIS 80 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 95301999985113427899999998899999987655400899999999899999999998069622143999987899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999954784312799999999995159
Q gi|254780522|r 80 IGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114 (114)
Q Consensus 80 L~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~GLr 114 (114)
||+||++|+++++.+++++|++|||||+.|++||+
T Consensus 81 igiwvlre~e~Ir~~es~nfeglIeit~iIrdGL~ 115 (115)
T COG5442 81 IGIWVLRESEAIRQGESNNFEGLIEITQIIRDGLK 115 (115)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999888999985534253248989999985339
No 5
>pfam02561 FliS Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.
Probab=96.09 E-value=0.11 Score=29.94 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
+++|.++.-. +.+|-+.=-.+|..+...|..|...- .+..+..+++..-+..-.-|..-|-.+ --.++=.||.+
T Consensus 5 y~aY~~~~v~-tasp~~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~l~ka~~Ii~~L~~sLd~e---~GgeiA~nL~~ 80 (122)
T pfam02561 5 YQAYQQNAVN-TASPLELIIMLYDKAIKALVRAAEFIENEDIEKKNENISKAQNIITELRSTLDEE---KGGEIAQNLLA 80 (122)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHH
T ss_conf 9999998682-2999999999999999999999999885789999999999999999999750853---36399998999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-.|+.++- ...+..+.+.++..+.+=..|++|
T Consensus 81 LY~~~~~~L~~An~~~d~~~l~ev~~~l~~lrea 114 (122)
T pfam02561 81 IYTYMNKRLVQANLKNDASKLDEVEALLRDLREA 114 (122)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988768999999999999999999
No 6
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.64 Score=25.49 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 269999997223797999999999999999999836--888399999999999999999999609889989899999999
Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKS--LPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114)
Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~--~~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114)
.++|.++.- +++||-+.=-.+|..+...|..|+.. ..+.++..+.+..-...-+-+..-|-.+ =-.++=.||..
T Consensus 7 ~~aY~qn~V-~taSP~~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E---~Ggeia~nL~~ 82 (132)
T COG1516 7 YQAYQQNQV-NTASPHKLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYE---KGGEIAQNLDA 82 (132)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH---HCCHHHHHHHH
T ss_conf 999998888-30889999999999999999999999980267999899999999999999753976---26639998999
Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999-999547843127999999999951
Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-.|..++- .+-...+...++..+.+=+.+++|
T Consensus 83 LY~y~~~rL~~ANl~nd~~~i~eV~~ll~~l~ea 116 (132)
T COG1516 83 LYDYMVRRLVQANLKNDASKIDEVIGLLRELREA 116 (132)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999988616899999999999999999
No 7
>PRK05685 fliS flagellar protein FliS; Validated
Probab=85.43 E-value=2.9 Score=21.58 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=78.9
Q ss_pred HHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 699999---972237979999999999999999998368--883999999999999999999996098899898999999
Q gi|254780522|r 3 QYYHET---IQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77 (114)
Q Consensus 3 ~~Y~~~---~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~L 77 (114)
++|.++ .+-.+.+|-+.=-.+|..+...|..|...- .+..+..+++..-+..-+.|..-|--+ -..++=.||
T Consensus 8 ~~Y~~~~~e~~v~tasP~~Li~mLydgai~~l~~A~~ai~~~d~~~~~~~i~ka~~Ii~eL~~sLd~e---~GgeiA~nL 84 (131)
T PRK05685 8 QAYQQVSVESQVSSASPHRLIQMLFEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDME---KGGEVAKNL 84 (131)
T ss_pred HHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHH
T ss_conf 99875307773551999999999999999999999999984899999999999999999999761864---333899999
Q ss_pred HHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999-999547843127999999999951
Q gi|254780522|r 78 ISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 78 isL~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
.+|-.|+.++- ...+..+.+.++..+.|=..+++|
T Consensus 85 ~~lY~y~~~~L~~an~~~d~~~l~ev~~il~~lrea 120 (131)
T PRK05685 85 SALYDYMIRRLLEANLRNDVQAIDEVEGLLREIKEA 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998878999999999999999999
No 8
>TIGR00444 mazG MazG family protein; InterPro: IPR011551 This group of prokaryotic proteins has no known function. It includes the uncharacterised protein MazG in Escherichia coli..
Probab=63.23 E-value=6.5 Score=19.52 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=38.5
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 999609889989899999999999999999999547-8431279999
Q gi|254780522|r 59 IQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRN-KSNSYQDIID 104 (114)
Q Consensus 59 ~~dl~~~~N~LP~~LRa~LisL~~fv~~~t~~v~~~-~~~~l~~LI~ 104 (114)
+..|-+|.||=|=+++++--||.-++.-+|=.|+.. +.+|++.|++
T Consensus 2 ~~~LR~P~gGCPWD~~Qt~~Sl~~Y~~EE~YEv~~Ai~~~D~~~l~E 48 (253)
T TIGR00444 2 IAQLRDPKGGCPWDKKQTYQSLIPYLVEETYEVLEAIEKEDIDDLRE 48 (253)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 54326834689752577799888788889999999987318278999
No 9
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=43.05 E-value=16 Score=17.17 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999722379799999999999999999983-68883999999999999999999996
Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDL 62 (114)
Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~-~~~~~~~~~eAL~~N~rLWt~~~~dl 62 (114)
+|-++ .+|+..+--.--++|+.++..|..-.+ +..++.-...-|..|..|||-=.+--
T Consensus 181 FyYEI-lnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~s 239 (268)
T COG5040 181 FYYEI-LNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEYS 239 (268)
T ss_pred EEEHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCC
T ss_conf 54015-069288889989889999998765226650300999999973132340333213
No 10
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=38.05 E-value=31 Score=15.51 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997223797999999999999999999836-8883999999999999999999
Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKS-LPNSKQAVEALFYTSRVWVVFI 59 (114)
Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~-~~~~~~~~eAL~~N~rLWt~~~ 59 (114)
+|.+++. .+..+-+.-..+|..++..|....+. -.++.-...=|..|-.||+.-.
T Consensus 179 F~YEI~~-~~~~A~~lAk~Afd~Ai~~ld~l~ee~ykdstlImqLLrDNltlWts~~ 234 (244)
T smart00101 179 FYYEILN-SPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDL 234 (244)
T ss_pred HHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999946-8899999999999999987600463557889999999998898720668
No 11
>TIGR00439 ftsX putative protein insertion permease FtsX; InterPro: IPR004513 FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX; FtsE mutants are viable only in high salt, supporting possible roles in cell division, as previously indicated, or in transport.; GO: 0007049 cell cycle, 0016021 integral to membrane.
Probab=34.54 E-value=10 Score=18.40 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHH
Q ss_conf 999999999836-8883999999999999999999996-0988998989
Q gi|254780522|r 26 RSISLLSIAHKS-LPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQE 72 (114)
Q Consensus 26 ~~~~~L~~A~~~-~~~~~~~~eAL~~N~rLWt~~~~dl-~~~~N~LP~~ 72 (114)
-|-.+|++-+.- .-++-.+-|+|.+- |=|+.|...+ .-+|||||+.
T Consensus 87 ~Vv~~l~~~kgve~~~y~sred~L~Ef-~sWsgfg~~l~mLd~NPLPaV 134 (314)
T TIGR00439 87 TVVSKLRRDKGVEKINYISREDALAEF-KSWSGFGELLEMLDDNPLPAV 134 (314)
T ss_pred HHHHHHHHHCCCCHHHCCCHHHHHHHH-HCCCCCCHHHHHHCCCCCCCE
T ss_conf 999999874062021011356677886-334643005676417879736
No 12
>smart00351 PAX Paired Box domain.
Probab=27.40 E-value=47 Score=14.44 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889989899999999999999999
Q gi|254780522|r 65 EDNHLPQEVKLNLISIGLWVLKEC 88 (114)
Q Consensus 65 ~~N~LP~~LRa~LisL~~fv~~~t 88 (114)
.+-|||.++|..|+.|+..=.+-+
T Consensus 14 nGRPLp~~~R~kIveLa~~G~rpc 37 (125)
T smart00351 14 NGRPLPDEERQRIVELAQNGVRPC 37 (125)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 994197899999999998599899
No 13
>pfam11921 DUF3439 Domain of unknown function (DUF3439). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 46 to 94 amino acids in length. This domain is found associated with pfam01462, pfam00560.
Probab=26.97 E-value=11 Score=18.20 Aligned_cols=19 Identities=11% Similarity=0.380 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999547
Q gi|254780522|r 76 NLISIGLWVLKECERIRRN 94 (114)
Q Consensus 76 ~LisL~~fv~~~t~~v~~~ 94 (114)
+|.||+.|+.+++..+...
T Consensus 4 gIlYLSRWIsqnsgvV~~~ 22 (122)
T pfam11921 4 GIDYLSRWIQKNSGIVKDS 22 (122)
T ss_pred CCHHHHHHHHHCCCEEECC
T ss_conf 4089999998788848457
No 14
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; InterPro: IPR010967 NADH can be oxidized by the respiratory chain of bacteria via NADH:quinone oxidoreductases that belong to three distinct enzyme families: NDH-1, NDH-2, and NQR. The NQR-type enzymes are sodium-motive NADH:quinone oxidoreductases consisting of six subunits (NqrA-F) and several cofactors: FAD, 2 FMN, a 2Fe-2S cluster and riboflavin. The NADH:quinone oxidoreductase activity of these enzymes is stimulated by sodium ions and is coupled with pumping of Na+ but not H+. Subunits NqrA, NqrC and NqrF represent the three major subunits of the NQR complex, which are alpha, gamma and beta, respectively. Subunits NqrB, NqrD and NqrE are very hydrophobic polypeptides that were found to co-localise with the alpha subunit . This entry represents the NqrE subunit.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=23.18 E-value=51 Score=14.22 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999-9999999547843127999999999951
Q gi|254780522|r 75 LNLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDG 112 (114)
Q Consensus 75 a~LisL~~fv-~~~t~~v~~~~~~~l~~LI~IN~~I~~G 112 (114)
|-+..+=+-+ +|..-..-..=+ =+=|||-||.+|..|
T Consensus 93 AAlvQilEm~lerF~p~LY~aLG-iFLPLitvnCAIlGg 130 (203)
T TIGR01940 93 AALVQILEMVLERFSPSLYNALG-IFLPLITVNCAILGG 130 (203)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 99999999999830677898875-776799998999987
No 15
>cd00131 PAX Paired Box domain
Probab=22.48 E-value=59 Score=13.89 Aligned_cols=24 Identities=13% Similarity=0.488 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889989899999999999999999
Q gi|254780522|r 65 EDNHLPQEVKLNLISIGLWVLKEC 88 (114)
Q Consensus 65 ~~N~LP~~LRa~LisL~~fv~~~t 88 (114)
.+-|||..+|..|+.|+..=.+-+
T Consensus 14 nGRPLp~~~R~kIVeLa~~G~Rpc 37 (128)
T cd00131 14 NGRPLPDSIRQRIVELAQSGIRPC 37 (128)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 994385889999999998599788
No 16
>PHA01159 hypothetical protein
Probab=21.55 E-value=41 Score=14.80 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=13.9
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 0988998989999999999
Q gi|254780522|r 63 VSEDNHLPQEVKLNLISIG 81 (114)
Q Consensus 63 ~~~~N~LP~~LRa~LisL~ 81 (114)
.+-=|.||.++|.-++-.|
T Consensus 73 ~s~fnaLPsdlR~~l~~fg 91 (114)
T PHA01159 73 ESRFNALPSDIRYILTEFG 91 (114)
T ss_pred HHHHHCCCHHHHHHHHHHC
T ss_conf 9998639888999999948
No 17
>pfam00292 PAX 'Paired box' domain.
Probab=21.15 E-value=63 Score=13.72 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 889989899999999999999999
Q gi|254780522|r 65 EDNHLPQEVKLNLISIGLWVLKEC 88 (114)
Q Consensus 65 ~~N~LP~~LRa~LisL~~fv~~~t 88 (114)
.+-|||..+|..|+.|+..=.+-+
T Consensus 14 nGRPLp~~~R~kIVeLa~~G~RpC 37 (125)
T pfam00292 14 NGRPLPNHIRQKIVELAHSGVRPC 37 (125)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 994286889999999998499788
No 18
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=63 Score=13.71 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97999999999999-99999983688839999999999999999999
Q gi|254780522|r 15 ECRKREHWILDRSI-SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60 (114)
Q Consensus 15 ~~R~~E~~~l~~~~-~~L~~A~~~~~~~~~~~eAL~~N~rLWt~~~~ 60 (114)
+....||...+.=. ..-+.+-..-.+++ ...||..-||=|..|..
T Consensus 40 ~C~~~e~~~aDa~LN~AY~~ll~~l~~~~-~~~aL~kaQRAWi~fRD 85 (127)
T COG3755 40 DCAGQEYQAADAELNKAYKALLKRLQDSP-RTKALQKAQRAWIAFRD 85 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHH
T ss_conf 88877899999999999999998720576-88999999999999725
Done!