Query gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62] Match_columns 114 No_of_seqs 106 out of 148 Neff 5.5 Searched_HMMs 33803 Date Wed Jun 1 16:40:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780522.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1vh6_A Flagellar protein FLIS 91.8 0.9 2.6E-05 24.3 9.9 105 2-112 9-116 (145) 2 >1orj_A Flagellar protein FLIS 72.8 6.6 0.00019 19.1 10.0 109 2-112 5-116 (130) 3 >1sj7_A Talin 1; structural pr 67.0 8.8 0.00026 18.4 4.4 88 2-93 70-172 (174) 4 >1sj8_A Talin 1; structural pr 63.9 6.8 0.0002 19.1 3.1 88 2-93 70-172 (178) 5 >1o9d_A 14-3-3-like protein C; 58.5 9.2 0.00027 18.3 3.0 58 4-62 15-73 (89) 6 >2br9_A 14-3-3E, 14-3-3 protei 39.9 6.8 0.0002 19.0 -0.1 53 4-57 15-68 (68) 7 >2o02_A 14-3-3 protein zeta/de 38.7 6.5 0.00019 19.2 -0.3 52 4-56 15-67 (68) 8 >1k78_A Paired box protein PAX 34.1 30 0.00089 15.2 2.5 21 68-88 1-21 (52) 9 >1ydx_A Type I restriction enz 33.7 25 0.00074 15.7 2.0 10 48-57 26-35 (98) 10 >2npm_A 14-3-3 domain containi 25.7 15 0.00043 17.1 -0.3 52 4-56 16-68 (70) 11 >2dw3_A Intrinsic membrane pro 24.1 38 0.0011 14.6 1.6 12 49-60 15-26 (77) 12 >2nrg_A Intrinsic membrane pro 22.6 42 0.0012 14.4 1.6 12 49-60 16-27 (82) No 1 >>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} (A:) Probab=91.77 E-value=0.9 Score=24.25 Aligned_cols=105 Identities=9% Similarity=0.131 Sum_probs=84.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 2699999972237979999999999999999998368--88399999999999999999999609889989899999999 Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79 (114) Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Lis 79 (114) .++|.++.- .+.+|=+.=-.+|..+...|..|.... .+..+..++|..-+.+-+-|..-|-.. .++=.+|.+ T Consensus 9 ~~aY~~~~v-~tasp~~Li~mLyd~ai~~l~~a~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~~-----~eiA~~L~~ 82 (145) T 1vh6_A 9 YTAYQQNSV-NTATPGELTLXLYNGCLKFIRLAAQAIENDDXERKNENLIKAQNIIQELNFTLNRN-----IELSASXGA 82 (145) T ss_dssp ------------CCTTHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTTHHHH T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHH T ss_conf 999998535-04999999999999999999999999985799999999999999999988652468-----089999999 Q ss_pred HHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 999999999-999547843127999999999951 Q gi|254780522|r 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDG 112 (114) Q Consensus 80 L~~fv~~~t-~~v~~~~~~~l~~LI~IN~~I~~G 112 (114) |-.|+.++. ...+..+.+.++..+.|=..+.+| T Consensus 83 LY~y~~~~L~~A~~~~d~~~i~ev~~il~~L~ea 116 (145) T 1vh6_A 83 XYDYXYRRLVQANIKNDTGXLAEVEGYVTDFRDA 116 (145) T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999998869999999999999999999 No 2 >>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four helix bundle; 2.25A {Aquifex aeolicus VF5} (A:) Probab=72.81 E-value=6.6 Score=19.13 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=71.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 2699999972237979999999999999999998368--883999-9999999999999999960988998989999999 Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL--PNSKQA-VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLI 78 (114) Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~--~~~~~~-~eAL~~N~rLWt~~~~dl~~~~N~LP~~LRa~Li 78 (114) ++.|.++ +-.+.+|=+.=-.+|..+...|..|...- .+.++. .++...-.|.=.+|...-.+=+-.-..++=.+|. T Consensus 5 ~~~Y~~~-~v~~a~p~~Li~mLyd~ai~~l~~A~~ai~~~d~~~k~~~~~~~l~ka~~Ii~eL~~~Ld~e~g~eia~~L~ 83 (130) T 1orj_A 5 AEAYFQN-MVETATPLEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLD 83 (130) T ss_dssp GGGTSCT-TCCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHH T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 9999987-286399999999999999999999999998367688878899999999999999995548523648898799 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999999999999547843127999999999951 Q gi|254780522|r 79 SIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112 (114) Q Consensus 79 sL~~fv~~~t~~v~~~~~~~l~~LI~IN~~I~~G 112 (114) +|-.|+.++...+-- +.+.++..+.|=..+.+| T Consensus 84 ~LY~y~~~~L~~an~-~~d~l~ev~~il~~L~ea 116 (130) T 1orj_A 84 TIYTIILNTLVKVDK-TKEELQKILEILKDLREA 116 (130) T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHH T ss_conf 999999999998768-899999999999999999 No 3 >>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} (A:) Probab=67.03 E-value=8.8 Score=18.38 Aligned_cols=88 Identities=9% Similarity=0.035 Sum_probs=52.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHH----------C-CCCHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 26999999722379799999999999999----999983----------6-88839999999999999999999960988 Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISL----LSIAHK----------S-LPNSKQAVEALFYTSRVWVVFIQDLVSED 66 (114) Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~----L~~A~~----------~-~~~~~~~~eAL~~N~rLWt~~~~dl~~~~ 66 (114) .-+-++++.-++.+|.++.|.+..-+... |....+ . ...+..+.+|- |+|=..|. ||.... T Consensus 70 ~AaTA~vv~lTs~~~~~~dytavG~aittIssNl~emsk~vrllaALmdd~~~~g~~Ll~Aa---r~L~~Afs-dlLkaa 145 (174) T 1sj7_A 70 TAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAA---KGLAGAVS-ELLRSA 145 (174) T ss_dssp HHHHHHHHHHSCSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH---HHHHHHHH-HHHHHT T ss_pred HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHHHHH-HHHHHC T ss_conf 99999996422689444660321217999962379999989999988213567668999999---99999999-999846 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 998989999999999999999999954 Q gi|254780522|r 67 NHLPQEVKLNLISIGLWVLKECERIRR 93 (114) Q Consensus 67 N~LP~~LRa~LisL~~fv~~~t~~v~~ 93 (114) ||-..+-|++|+.=+.-|-..+..++. T Consensus 146 ~p~s~e~rq~lL~AA~~VG~as~~lL~ 172 (174) T 1sj7_A 146 QPASAEPRQNLLQAAGNVGQASGELLQ 172 (174) T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 876678506899999999999999986 No 4 >>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} (A:1-178) Probab=63.88 E-value=6.8 Score=19.06 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=53.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHH---------H-HHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 26999999722379799999999999999----999---------9-8368-8839999999999999999999960988 Q gi|254780522|r 2 RQYYHETIQESSIECRKREHWILDRSISL----LSI---------A-HKSL-PNSKQAVEALFYTSRVWVVFIQDLVSED 66 (114) Q Consensus 2 r~~Y~~~~~~s~~~~R~~E~~~l~~~~~~----L~~---------A-~~~~-~~~~~~~eAL~~N~rLWt~~~~dl~~~~ 66 (114) .-+-++++.-++..|.++.|.+..-+... |.. | .+.. ..+..+.+|- |+|=..|..-| ... T Consensus 70 ~AaTA~vv~lTs~~~~~~dytavG~aittIssNl~emsk~vrl~aaL~dd~~~~g~~Ll~Aa---r~L~~AfsdlL-kaa 145 (178) T 1sj8_A 70 TAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGGNGRPLLQAA---KGLAGAVSELL-RSA 145 (178) T ss_dssp HHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHH---HHHHHHHHHHH-HHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHH T ss_conf 99999989988777887459999999999999999999999999988764566677568999---99999999999-999 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 998989999999999999999999954 Q gi|254780522|r 67 NHLPQEVKLNLISIGLWVLKECERIRR 93 (114) Q Consensus 67 N~LP~~LRa~LisL~~fv~~~t~~v~~ 93 (114) ||-..+-|++|+.=+.-|-..+..++. T Consensus 146 ~p~s~e~rq~lL~AA~~VG~as~~lL~ 172 (178) T 1sj8_A 146 QPASAEPRQNLLQAAGNVGQASGELLQ 172 (178) T ss_dssp CTTCCSCTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 875122204789999989999877873 No 5 >>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} (A:172-260) Probab=58.48 E-value=9.2 Score=18.27 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=45.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999722379799999999999999999983-68883999999999999999999996 Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDL 62 (114) Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~-~~~~~~~~~eAL~~N~rLWt~~~~dl 62 (114) +|.+++. .+..+.+.=..+|..++..+....+ .-.++.-...-|..|-.||+.-..+- T Consensus 15 F~YEI~~-~~~~A~~lAk~afd~Ai~~ld~l~eesykDstlImqLLrDNLtlWt~~~~~~ 73 (89) T 1o9d_A 15 FYYEILN-SPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDD 73 (89) T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTC----- T ss_pred HHHHHHC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9999913-8599999999999999876412784458999999999999999875248666 No 6 >>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural genomics consortium, SGC; HET: SEP; 1.75A {Homo sapiens} PDB: 2o98_A* (A:167-234) Probab=39.89 E-value=6.8 Score=19.03 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=39.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH Q ss_conf 99999972237979999999999999999998368-8839999999999999999 Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVV 57 (114) Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~-~~~~~~~eAL~~N~rLWt~ 57 (114) +|.+++. .+..+.+.-..+|..++..+....+.. .++.-..+=|..|-.||+. T Consensus 15 F~yEI~~-~~~~A~~lAk~afd~Ai~~ld~l~ee~ykDstlImqLLrdNltlWts 68 (68) T 2br9_A 15 FYYEILN-SPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 68 (68) T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999847-99999999999999999876437843479999999999988877349 No 7 >>2o02_A 14-3-3 protein zeta/delta; 14-3-3, adapter protein, pathogen, protein binding/toxin complex; 1.50A {Homo sapiens} (A:163-230) Probab=38.69 E-value=6.5 Score=19.16 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH Q ss_conf 99999972237979999999999999999998368-883999999999999999 Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWV 56 (114) Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~-~~~~~~~eAL~~N~rLWt 56 (114) +|.+++. .+..+.+.-..+|..++..+....+.. .++.-..+=|..|-.||+ T Consensus 15 F~yEI~~-~~~~A~~lAk~afd~Ai~~ld~l~ee~ykDs~lImqLLrdNltlWt 67 (68) T 2o02_A 15 FYYEILN-SPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWT 67 (68) T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999817-9899999999999999987505881017899999999998887723 No 8 >>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} (A:32-83) Probab=34.07 E-value=30 Score=15.23 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=16.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 989899999999999999999 Q gi|254780522|r 68 HLPQEVKLNLISIGLWVLKEC 88 (114) Q Consensus 68 ~LP~~LRa~LisL~~fv~~~t 88 (114) |||..+|..|+.|+.--.+-+ T Consensus 1 PLp~~~R~kIVela~~G~Rpc 21 (52) T 1k78_A 1 PLPDVVRQRIVELAHQGVRPC 21 (52) T ss_dssp CCCHHHHHHHHHHHHTTCCHH T ss_pred ECCHHHHHHHHHHHHCCCCHH T ss_conf 797999999999999699899 No 9 >>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:165-220,A:365-406) Probab=33.68 E-value=25 Score=15.71 Aligned_cols=10 Identities=0% Similarity=-0.110 Sum_probs=3.4 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780522|r 48 LFYTSRVWVV 57 (114) Q Consensus 48 L~~N~rLWt~ 57 (114) +.-||+|-.- T Consensus 26 ieinrklrde 35 (98) T 1ydx_A 26 IEINRKLRDE 35 (98) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 10 >>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.52A {Cryptosporidium parvum} (A:191-260) Probab=25.71 E-value=15 Score=17.10 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=36.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH Q ss_conf 99999972237979999999999999999998368-883999999999999999 Q gi|254780522|r 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWV 56 (114) Q Consensus 4 ~Y~~~~~~s~~~~R~~E~~~l~~~~~~L~~A~~~~-~~~~~~~eAL~~N~rLWt 56 (114) +|.+++. ....+.+.=..+|..+...+....+.. .++.-..+=|..|-.+|+ T Consensus 16 F~YEi~~-~~~~A~~lak~afd~a~~~ld~l~ee~y~ds~~I~qLLrdNl~lW~ 68 (70) T 2npm_A 16 FHYEILN-EPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWT 68 (70) T ss_dssp HHHHTSC-CHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999907-9999999999999999987634672016999999999998888754 No 11 >>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A (A:) Probab=24.06 E-value=38 Score=14.63 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780522|r 49 FYTSRVWVVFIQ 60 (114) Q Consensus 49 ~~N~rLWt~~~~ 60 (114) .-|.|||..|+- T Consensus 15 ktnlrlwvafqm 26 (77) T 2dw3_A 15 KTNLRLWVAFQM 26 (77) T ss_dssp HHHHHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 644047888988 No 12 >>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides} (A:) Probab=22.60 E-value=42 Score=14.36 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780522|r 49 FYTSRVWVVFIQ 60 (114) Q Consensus 49 ~~N~rLWt~~~~ 60 (114) .-|.|||..|+- T Consensus 16 ktnlrlwvafqm 27 (82) T 2nrg_A 16 KTNLRLWVAFQM 27 (82) T ss_dssp HHHHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 643168899988 Done!