BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
(114 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|222147592|ref|YP_002548549.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium vitis
S4]
gi|221734580|gb|ACM35543.1| FLAF protein [Agrobacterium vitis S4]
Length = 115
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
M Q Y+E +++ + ++RE +LDRSI LLS A + ++ +EAL+YT RVW+ FI
Sbjct: 1 MYQFSYNEIMEDGVADAKERERQVLDRSIDLLSQAKTAGKYGREGIEALYYTRRVWIRFI 60
Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+DL DN L E++ NLISI LW+LKEC+RIR+ +S++YQ IIDV +I+RDGLK
Sbjct: 61 EDLKQPDNQLGTELRANLISIALWILKECDRIRKRESDNYQGIIDVTTIIRDGLK 115
>gi|116250503|ref|YP_766341.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
leguminosarum bv. viciae 3841]
gi|115255151|emb|CAK06225.1| putative flagellar synthesis related protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 115
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/111 (54%), Positives = 83/111 (74%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L E++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLEIELRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115
>gi|110632637|ref|YP_672845.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium sp.
BNC1]
gi|110283621|gb|ABG61680.1| flagellar FlaF [Chelativorans sp. BNC1]
Length = 115
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 77/111 (69%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E + +S + + RE +L RSI LL+ A ++ P S++A+EA+ + +RVW ++DL
Sbjct: 5 SYSEVLSDSVADAKDRERQLLTRSIDLLTQAREAGPRSREAIEAILFMNRVWTSLVEDLG 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
N LP+E++ NLISIGLW+L+E E +R+ +S+++ +I++ I+RDGL+
Sbjct: 65 DPGNALPKELRANLISIGLWLLREGEEVRQGRSDNFDGLIEISQIIRDGLR 115
>gi|254780522|ref|YP_003064935.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040199|gb|ACT56995.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 114
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ
Sbjct: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK
Sbjct: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
>gi|241203127|ref|YP_002974223.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857017|gb|ACS54684.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 115
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LL+ A + ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLAAAREKEKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L ++ NLISI +W+LKEC+RIR+ +SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLEIGLRANLISIAIWILKECDRIRKRQSNNYQGIIDVTTIIRDGLK 115
>gi|209547949|ref|YP_002279866.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209533705|gb|ACI53640.1| flagellar FlaF family protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 115
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/111 (54%), Positives = 82/111 (73%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LLS+A + ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIDLLSLAREKEKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L E++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLEIELRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115
>gi|222084888|ref|YP_002543417.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
K84]
gi|221722336|gb|ACM25492.1| flagellin synthesis regulator protein [Agrobacterium radiobacter
K84]
Length = 115
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 61/111 (54%), Positives = 82/111 (73%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q++ + ++RE +LDRSI+LL+ A ++A+EALFYT RVWV FI+DL
Sbjct: 5 SYAEVMQDAVADAKERERQVLDRSITLLAAARDKEKYGREAIEALFYTRRVWVSFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S DN L E++ NLISI LW+LKEC+RIRR +S +YQ IIDV +I+RDGLK
Sbjct: 65 SPDNQLNVELRANLISIALWILKECDRIRRRQSENYQGIIDVTTIIRDGLK 115
>gi|86356333|ref|YP_468225.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli CFN
42]
gi|218671598|ref|ZP_03521268.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
GR56]
gi|86280435|gb|ABC89498.1| flagellin synthesis regulator protein [Rhizobium etli CFN 42]
Length = 115
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/111 (53%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LLS+A ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLSLARDKEKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115
>gi|114706625|ref|ZP_01439526.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
gi|114538017|gb|EAU41140.1| flagellar protein flaF [Fulvimarina pelagi HTCC2506]
Length = 115
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 75/110 (68%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E Q+++++ R+RE D SI+LL A KS P S+ A+EA++ T +W + ++DL
Sbjct: 5 SYAEVAQDTAVDARERERQAFDHSIALLEKAEKSGPRSRDAIEAIYITRSLWSILVEDLG 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
S DN LP+E++ LISIGLW++ E E IR KS +++ I+++ ++RDGL
Sbjct: 65 SADNGLPEELRAELISIGLWIMSEAEAIRVGKSTNFKGIVEITRLIRDGL 114
>gi|190890385|ref|YP_001976927.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
gi|190695664|gb|ACE89749.1| flagellin synthesis regulator protein [Rhizobium etli CIAT 652]
gi|327193062|gb|EGE59974.1| flagellin synthesis regulator protein [Rhizobium etli CNPAF512]
Length = 115
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLALARDKDKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115
>gi|254473396|ref|ZP_05086793.1| flagellar FlaF [Pseudovibrio sp. JE062]
gi|211957512|gb|EEA92715.1| flagellar FlaF [Pseudovibrio sp. JE062]
Length = 115
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 69/112 (61%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
+ Y ET+++SS + R +E + ++ L A + S +A +AL R+W + I D
Sbjct: 3 QMSYAETLEDSSEDRRGQERELFSLVVAQLQAADEHGSASSEAAQALTSVHRLWSILISD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L S +N LP E++ +LISIG+W +K+ + IR KS+ ++ +I++ +VRDGL
Sbjct: 63 LGSPENGLPAELRADLISIGIWCVKQADLIREGKSDDFKSLIEINELVRDGL 114
>gi|315500093|ref|YP_004088896.1| flagellar flaf family protein [Asticcacaulis excentricus CB 48]
gi|315418105|gb|ADU14745.1| flagellar FlaF family protein [Asticcacaulis excentricus CB 48]
Length = 136
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61
Q Y +T Q S + R+ E+ + + L A + + ++AL + R+W V D
Sbjct: 4 QAYQKTAQRS-EDPRQTEYRLFGQVTRALMEAAELDRSEVSRRMDALDWNRRLWSVLGTD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LP+ ++ ++S+ +WV + + R + +I+V ++ GL
Sbjct: 63 CALPGNGLPETLRAQIVSLSIWVNRHTSAVMRGQEE-IAPLIEVNRLIMQGL 113
>gi|218462422|ref|ZP_03502513.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli Kim
5]
Length = 115
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 58/111 (52%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +Q+S + ++RE +LDRSI LL++A ++A+EALFYT RVW+ FI+DL
Sbjct: 5 SYAEVMQDSVADAKEREWQVLDRSIELLALARDKEKYGREAIEALFYTRRVWISFIEDLK 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L +++ NLISI +W+LKEC+RIR+ SN+YQ IIDV +I+RDGLK
Sbjct: 65 HPDNQLDVQLRANLISIAIWILKECDRIRKRLSNNYQGIIDVTTIIRDGLK 115
>gi|296445193|ref|ZP_06887153.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
gi|296257367|gb|EFH04434.1| flagellar FlaF family protein [Methylosinus trichosporium OB3b]
Length = 115
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 73/112 (65%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
R Y +T Q+SS R RE +L+R+I LL++A P S+++ EA R+W++F+ D
Sbjct: 3 RHLYAQTAQDSSAVARGRERDVLERAIRLLAVAKVKGPRSRESFEATDNLRRLWLLFVDD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L S+ N LP+ ++ +LISIGLWV++E + I K +++ +I++ ++ DGL
Sbjct: 63 LSSDGNALPEALRASLISIGLWVMREVDAIDSGKCDNFDGLIEINQMIADGL 114
>gi|302383513|ref|YP_003819336.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
15264]
gi|302194141|gb|ADL01713.1| flagellar FlaF family protein [Brevundimonas subvibrioides ATCC
15264]
Length = 120
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFI 59
M + Y + + R+ E+ + + L A + K ++AL + R+W V
Sbjct: 1 MLKAYAQ-ASTRTETPREMEYRLFGQVTRALMHAATVDPSDVKTRIDALDWNRRLWSVLA 59
Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D N L ++ +ISI L+V + I R + ++ +ID+ + GL
Sbjct: 60 TDCSDPSNQLNTPLRAQIISISLFVGRHSSAIMRGE-EDFEALIDINRSIMQGL 112
>gi|239834424|ref|ZP_04682752.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
intermedium LMG 3301]
gi|239822487|gb|EEQ94056.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
intermedium LMG 3301]
Length = 114
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 75/109 (68%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + R+RE + DRSI++L +A ++ S++ ++A ++T+++W I DL S
Sbjct: 6 YEDVMTDDMASARERERTLFDRSIAMLELAKENGSGSREGIDATYFTTKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL
Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114
>gi|153011505|ref|YP_001372719.1| flagellar biosynthesis regulatory protein FlaF [Ochrobactrum
anthropi ATCC 49188]
gi|151563393|gb|ABS16890.1| flagellar FlaF family protein [Ochrobactrum anthropi ATCC 49188]
Length = 114
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 74/109 (67%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DRSI++L A + S++A++A ++T+++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERALFDRSIAMLEAAKANGSGSREAIDAAYFTTKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E+K +IS+G++VLKE ERIR+ +SN Y +I++ +RDGL
Sbjct: 66 EENVLPKELKAAIISVGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114
>gi|260466600|ref|ZP_05812788.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
gi|259029606|gb|EEW30894.1| flagellar FlaF family protein [Mesorhizobium opportunistum WSM2075]
Length = 115
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 78/111 (70%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + S + + RE +L RSI +LS A + +S +AVEAL +T+RVW F++DL
Sbjct: 5 SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAVEALHFTNRVWTTFVEDLG 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S DN LP+E++ NLISIGLW+L+E E IR+ ++++++ +I+V I+RDG++
Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTDNFEGLIEVSQIIRDGIQ 115
>gi|83858827|ref|ZP_00952349.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
gi|83853650|gb|EAP91502.1| flaF protein [Oceanicaulis alexandrii HTCC2633]
Length = 118
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60
Q Y +T + + R+ E+ +L L + +Q V AL RVW F
Sbjct: 3 YQAY-KTASSRTEDPRQTEYRLLGEVTRGLMEVRDAPKSEIRQRVAALDRNRRVWSAFAA 61
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D S N+LP ++ +IS+ ++V KE R ++ + +ID+ + GL
Sbjct: 62 DCASSHNNLPDSLRAGIISLSIFVSKETSAAMRGET-DVETLIDINRTIMQGL 113
>gi|217976243|ref|YP_002360390.1| flagellar biosynthesis regulatory protein FlaF [Methylocella
silvestris BL2]
gi|217501619|gb|ACK49028.1| flagellar FlaF family protein [Methylocella silvestris BL2]
Length = 115
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 72/111 (64%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E+++ S ECR+RE LD ++ LL A S A EAL + R+W I+DL+
Sbjct: 5 SYAESLESSPGECRERERRALDHALQLLEKARHDGVGSAAAAEALHFLCRLWKALIEDLI 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S +N LP ++ +L+S+G+WVL+E + IR KS++++ +I++ S +R+GL+
Sbjct: 65 SPENDLPDVLRGDLVSVGIWVLREADSIREEKSSNFRGLIEICSAIRNGLR 115
>gi|225628426|ref|ZP_03786460.1| Protein flaF [Brucella ceti str. Cudo]
gi|254706499|ref|ZP_05168327.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M163/99/10]
gi|254711216|ref|ZP_05173027.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis B2/94]
gi|254711815|ref|ZP_05173626.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M644/93/1]
gi|254714884|ref|ZP_05176695.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M13/05/1]
gi|256030155|ref|ZP_05443769.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M292/94/1]
gi|256158334|ref|ZP_05456238.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M490/95/1]
gi|256252732|ref|ZP_05458268.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
B1/94]
gi|260166793|ref|ZP_05753604.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
gi|261216574|ref|ZP_05930855.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M13/05/1]
gi|261219810|ref|ZP_05934091.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
B1/94]
gi|261313953|ref|ZP_05953150.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M163/99/10]
gi|261318807|ref|ZP_05958004.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis B2/94]
gi|261319444|ref|ZP_05958641.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M644/93/1]
gi|261756170|ref|ZP_05999879.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
gi|265987186|ref|ZP_06099743.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M292/94/1]
gi|265996849|ref|ZP_06109406.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M490/95/1]
gi|225616272|gb|EEH13320.1| Protein flaF [Brucella ceti str. Cudo]
gi|260918394|gb|EEX85047.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
B1/94]
gi|260921663|gb|EEX88231.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M13/05/1]
gi|261292134|gb|EEX95630.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M644/93/1]
gi|261298030|gb|EEY01527.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis B2/94]
gi|261302979|gb|EEY06476.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M163/99/10]
gi|261736154|gb|EEY24150.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. F5/99]
gi|262551146|gb|EEZ07307.1| flagellar biosynthesis regulatory protein FlaF [Brucella ceti
M490/95/1]
gi|264659383|gb|EEZ29644.1| flagellar biosynthesis regulatory protein FlaF [Brucella
pinnipedialis M292/94/1]
Length = 114
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 74/109 (67%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DRSI++L +A + S++ ++A ++TS++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEVARANGAESREGIDAAYFTSKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL
Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114
>gi|170748122|ref|YP_001754382.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
radiotolerans JCM 2831]
gi|170654644|gb|ACB23699.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
2831]
Length = 119
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 67/112 (59%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
+ Y ET+ +S R+RE DR+I L+ A + +++ EA + R+W + I DL
Sbjct: 8 EAYRETMGDSPAIGREREREAFDRAIELMKRADAAEASAELRWEATSFLQRLWSMLIDDL 67
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ N LP +++ +LISIGLW + ++I R ++ ++ +I V +++RDGL+
Sbjct: 68 ANPANSLPPQLRADLISIGLWNMSRSDQILRGDASGFEPLIYVNTLIRDGLR 119
>gi|23500851|ref|NP_700291.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis 1330]
gi|62317954|ref|YP_223807.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 1 str. 9-941]
gi|83269931|ref|YP_419222.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
biovar Abortus 2308]
gi|148558679|ref|YP_001258001.1| flagellar biosynthesis regulatory protein FlaF [Brucella ovis ATCC
25840]
gi|161621179|ref|YP_001595065.1| flagellar biosynthesis regulatory protein FlaF [Brucella canis ATCC
23365]
gi|163845454|ref|YP_001623109.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis ATCC
23445]
gi|189023205|ref|YP_001932946.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
S19]
gi|225686882|ref|YP_002734854.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
ATCC 23457]
gi|237817499|ref|ZP_04596490.1| Protein flaF [Brucella abortus str. 2308 A]
gi|254691614|ref|ZP_05154868.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 6 str. 870]
gi|254695090|ref|ZP_05156918.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 3 str. Tulya]
gi|254698186|ref|ZP_05160014.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 2 str. 86/8/59]
gi|254699259|ref|ZP_05161087.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
str. 513]
gi|254702380|ref|ZP_05164208.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
str. 686]
gi|254720776|ref|ZP_05182587.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
gi|254731631|ref|ZP_05190209.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 4 str. 292]
gi|256015895|ref|YP_003105904.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
CCM 4915]
gi|256059807|ref|ZP_05450002.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
5K33]
gi|256112179|ref|ZP_05453100.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 3 str. Ether]
gi|256256801|ref|ZP_05462337.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 9 str. C68]
gi|256261981|ref|ZP_05464513.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 2 str. 63/9]
gi|260544139|ref|ZP_05819960.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
NCTC 8038]
gi|260568717|ref|ZP_05839186.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
str. 40]
gi|260757245|ref|ZP_05869593.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 6 str. 870]
gi|260759390|ref|ZP_05871738.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 4 str. 292]
gi|260762633|ref|ZP_05874965.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 2 str. 86/8/59]
gi|260883049|ref|ZP_05894663.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 9 str. C68]
gi|261215441|ref|ZP_05929722.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 3 str. Tulya]
gi|261323787|ref|ZP_05962984.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
5K33]
gi|261749699|ref|ZP_05993408.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
str. 513]
gi|261752943|ref|ZP_05996652.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
str. 686]
gi|265985834|ref|ZP_06098569.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
gi|265993606|ref|ZP_06106163.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 3 str. Ether]
gi|294852965|ref|ZP_06793637.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
gi|297250154|ref|ZP_06933855.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
abortus bv. 5 str. B3196]
gi|306840133|ref|ZP_07472918.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
2653]
gi|306841279|ref|ZP_07473990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
gi|23464515|gb|AAN34296.1| flagellar protein FlaF, putative [Brucella suis 1330]
gi|62198147|gb|AAX76446.1| hypothetical FlaF [Brucella abortus bv. 1 str. 9-941]
gi|82940205|emb|CAJ13261.1| flagellar protein FlaF, putative [Brucella melitensis biovar
Abortus 2308]
gi|148369964|gb|ABQ62836.1| putative flagellar protein FlaF [Brucella ovis ATCC 25840]
gi|161337990|gb|ABX64294.1| flagellar FlaF family protein [Brucella canis ATCC 23365]
gi|163676177|gb|ABY40287.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021779|gb|ACD74500.1| flagellar protein FlaF, putative [Brucella abortus S19]
gi|225642987|gb|ACO02900.1| Protein flaF [Brucella melitensis ATCC 23457]
gi|237787334|gb|EEP61551.1| Protein flaF [Brucella abortus str. 2308 A]
gi|255998555|gb|ACU50242.1| flagellar biosynthesis regulatory protein FlaF [Brucella microti
CCM 4915]
gi|260097410|gb|EEW81284.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
NCTC 8038]
gi|260155382|gb|EEW90463.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 4
str. 40]
gi|260669708|gb|EEX56648.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 4 str. 292]
gi|260673054|gb|EEX59875.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 2 str. 86/8/59]
gi|260677353|gb|EEX64174.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 6 str. 870]
gi|260872577|gb|EEX79646.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 9 str. C68]
gi|260917048|gb|EEX83909.1| flagellar biosynthesis regulatory protein FlaF [Brucella abortus
bv. 3 str. Tulya]
gi|261299767|gb|EEY03264.1| flagellar biosynthesis regulatory protein FlaF [Brucella neotomae
5K33]
gi|261739452|gb|EEY27378.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 5
str. 513]
gi|261742696|gb|EEY30622.1| flagellar biosynthesis regulatory protein FlaF [Brucella suis bv. 3
str. 686]
gi|262764476|gb|EEZ10508.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 3 str. Ether]
gi|263091465|gb|EEZ16001.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 2 str. 63/9]
gi|264664426|gb|EEZ34687.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. 83/13]
gi|294818620|gb|EFG35620.1| flagellar protein FlaF [Brucella sp. NVSL 07-0026]
gi|297174023|gb|EFH33387.1| flaF, flagellar biosynthesis regulatory protein FlaF [Brucella
abortus bv. 5 str. B3196]
gi|306288681|gb|EFM60012.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO2]
gi|306404778|gb|EFM61072.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. NF
2653]
gi|326411300|gb|ADZ68364.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
M28]
gi|326554589|gb|ADZ89228.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
M5-90]
Length = 114
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 73/109 (66%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL
Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114
>gi|167646850|ref|YP_001684513.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter sp.
K31]
gi|167349280|gb|ABZ72015.1| flagellar FlaF family protein [Caulobacter sp. K31]
Length = 120
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
Y +T + R+ E+ + + L A ++ + ++AL + RVW D
Sbjct: 5 AYQQTATRT-ENPREMEYRLFGQVTRALMAASEAPADDIATRIDALDWNRRVWSALATDC 63
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+N LP +++ ++IS+ LWV + + R K ++ +I++ ++ GL
Sbjct: 64 SLPENTLPVQLRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113
>gi|17988506|ref|NP_541139.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. 16M]
gi|256042863|ref|ZP_05445809.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. Rev.1]
gi|260564100|ref|ZP_05834585.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. 16M]
gi|265989298|ref|ZP_06101855.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. Rev.1]
gi|17984298|gb|AAL53403.1| flaf protein [Brucella melitensis bv. 1 str. 16M]
gi|260151743|gb|EEW86836.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. 16M]
gi|262999967|gb|EEZ12657.1| flagellar biosynthesis regulatory protein FlaF [Brucella melitensis
bv. 1 str. Rev.1]
Length = 114
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 73/109 (66%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DR+I++L A + S++ ++A ++TS++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERMLFDRTIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ +RDGL
Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIRDGL 114
>gi|319781662|ref|YP_004141138.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167550|gb|ADV11088.1| flagellar FlaF family protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 115
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 77/111 (69%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + S + + RE +L RSI +L+ A + S +A+EAL +T+RVW F++DL
Sbjct: 5 SYADIQSNSVADAKDRERELLTRSIDMLAAAAVAGHGSMEAIEALHFTNRVWTAFVEDLG 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++
Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115
>gi|319409166|emb|CBI82810.1| Flaf protein [Bartonella schoenbuchensis R1]
Length = 122
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 65/109 (59%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE + DR I L A P S + EA+ + ++W++ I+DL
Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLFLDAKAKGPGSHEVNEAVQFARKLWIILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+N LP E+K +LISIG ++LKE +++ K + ++++ +RDGL
Sbjct: 66 AENALPPELKASLISIGFFILKEIQKLDEGKVADFDVLVEISESIRDGL 114
>gi|306845416|ref|ZP_07477990.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
gi|306274159|gb|EFM55975.1| flagellar biosynthesis regulatory protein FlaF [Brucella sp. BO1]
Length = 114
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 73/109 (66%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I++ ++DGL
Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLIEITQSIQDGL 114
>gi|328545488|ref|YP_004305597.1| flagellar protein flaF [polymorphum gilvum SL003B-26A1]
gi|326415229|gb|ADZ72292.1| Flagellar protein flaF [Polymorphum gilvum SL003B-26A1]
Length = 116
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 71/111 (63%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y +TI + ++ R E +D I+ L A + S++AVEA+F T R+W FI+ L
Sbjct: 5 SYAQTIDDLCVDQRSDERQAMDIVIAQLERAREKGLKSREAVEAIFNTRRLWSFFIESLA 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ N LP ++ +LISIG+WV+KE ER+R+ ++ + +IDV ++VRDGLK
Sbjct: 65 DDANELPPSLRADLISIGIWVIKEVERVRQRETETLDALIDVNAMVRDGLK 115
>gi|315122287|ref|YP_004062776.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495689|gb|ADR52288.1| flagellar biosynthesis regulatory protein FlaF [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 114
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 86/114 (75%), Positives = 102/114 (89%)
Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
MRQYY+E +QESS+E RKRE WIL++SISLLS A +S PNS++ VEAL+YT+RVWVVFIQ
Sbjct: 1 MRQYYNEIVQESSVESRKREFWILNKSISLLSSAQQSKPNSREVVEALYYTNRVWVVFIQ 60
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DLVSE N L +EVKLNLISIGLW+L+ECERIRRN+SN+YQ IIDV S+VRDGLK
Sbjct: 61 DLVSESNQLTEEVKLNLISIGLWILEECERIRRNESNNYQAIIDVTSVVRDGLK 114
>gi|13472595|ref|NP_104162.1| flagellar biosynthesis regulatory protein FlaF [Mesorhizobium loti
MAFF303099]
gi|14023341|dbj|BAB49948.1| flagellar protein; FlaF [Mesorhizobium loti MAFF303099]
Length = 115
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 79/111 (71%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + S + + RE +L RSI +LS A + +S +A+EAL +T+RVW +F++DL
Sbjct: 5 SYADVQSTSVSDAKDRERELLTRSIDMLSAAAAAGQDSMEAIEALNFTNRVWTIFVEDLG 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S DN LP+E++ NLISIGLW+L+E E IR+ ++N+++ +I+V I+RDG++
Sbjct: 65 SSDNALPKELRANLISIGLWLLREAEDIRQGRTNNFEGLIEVSQIIRDGIQ 115
>gi|295689336|ref|YP_003593029.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
gi|295431239|gb|ADG10411.1| flagellar FlaF family protein [Caulobacter segnis ATCC 21756]
Length = 120
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
Y + + R+ E+ + + L A ++ + + ++AL + +VW D
Sbjct: 5 AYQQAA-TRAENPREMEYRLFGQVTRALMEASQAPADDFAKRIDALDWNRKVWSALATDC 63
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
DN LP E++ ++IS+ LWV + + R K ++ +I++ I+ GL
Sbjct: 64 SLPDNQLPMELRASIISLSLWVSRHSSAVMR-KEEEFEPLIEINRIIMQGL 113
>gi|325291965|ref|YP_004277829.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
H13-3]
gi|325059818|gb|ADY63509.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium sp.
H13-3]
Length = 114
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +++ + + RE L +SI LL A S + + +EALFYT RVW+ FI+DL
Sbjct: 5 SYAEIMEDGVADAKDRERQALTKSIDLLVEAKDS-SSQRHTIEALFYTRRVWIRFIEDLK 63
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+N L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 64 QPENQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114
>gi|170744546|ref|YP_001773201.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
sp. 4-46]
gi|168198820|gb|ACA20767.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
Length = 115
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 68/113 (60%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
R Y+E ++++ CR+RE DR+++LL A + + EA+ + R+W V I+D
Sbjct: 3 RFSYNEILEDAPDLCRERERAAFDRALALLRKADAADAKFEDRGEAVSFLQRLWDVLIED 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
L++ +N LP+ ++ +L+SIGLW ++E R S +IDV + +RDGL+
Sbjct: 63 LLNPENGLPEPLRTDLVSIGLWSMREASEALRLPERSLAPLIDVNTAIRDGLR 115
>gi|90418362|ref|ZP_01226274.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
gi|90338034|gb|EAS51685.1| flagellar protein FlaF [Aurantimonas manganoxydans SI85-9A1]
Length = 115
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/111 (41%), Positives = 72/111 (64%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E Q+ ++ R+RE LD SI L A P S+ A+EA++ T +W + I+DL
Sbjct: 5 SYAEVAQDIEVDARERERQALDHSIEQLKKADAEGPRSRAAIEAIYTTRSLWALVIEDLA 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
S DN LP+ ++ LISIGLW+++E E IR KS +++ II++ +++R+GLK
Sbjct: 65 SADNGLPEALRAELISIGLWIMREAEAIRLGKSENFKGIIEITTLIREGLK 115
>gi|15887922|ref|NP_353603.1| flagellar biosynthesis regulatory protein FlaF [Agrobacterium
tumefaciens str. C58]
gi|15155518|gb|AAK86388.1| FLAF protein [Agrobacterium tumefaciens str. C58]
Length = 114
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E +++ + RE L +SI LL A S + + ++EALFYT RVW+ FI+DL
Sbjct: 5 SYAEIMEDGVANAKDRERQALTKSIDLLVEARDS-SSQRHSIEALFYTRRVWIRFIEDLK 63
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN L E++ NLISI +W+LKECE IR+ +S ++Q IIDV +I+RDGLK
Sbjct: 64 QPDNQLAMELRANLISIAIWILKECELIRKRQSTNFQGIIDVTTIIRDGLK 114
>gi|118589963|ref|ZP_01547367.1| flagellar protein flaF [Stappia aggregata IAM 12614]
gi|118437460|gb|EAV44097.1| flagellar protein flaF [Stappia aggregata IAM 12614]
Length = 116
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 66/112 (58%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
Y E + + + R EH + I L++A + S +AV+ALFYT R+W F++
Sbjct: 3 NLSYAEVMDDLCSDQRLNEHEAMTIVIGKLNVAKERGVKSPEAVDALFYTRRLWSYFLEH 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L E N LP E + NLIS+G+WVLKE E +R+ + + DII + SI+RD L
Sbjct: 63 LADEANELPIETRANLISVGIWVLKEVEALRQWEQEDFSDIIQINSIIRDSL 114
>gi|161485648|ref|NP_420272.2| flagellar biosynthesis regulatory protein FlaF [Caulobacter
crescentus CB15]
gi|221234463|ref|YP_002516899.1| flagellar biosynthesis regulatory protein FlaF [Caulobacter
crescentus NA1000]
gi|220963635|gb|ACL94991.1| flagellar biosynthesis regulatory protein flaF [Caulobacter
crescentus NA1000]
Length = 120
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
Y + + R+ E+ + + L A ++ + ++AL + +VW D
Sbjct: 5 AYQQAA-TRAENPREMEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDC 63
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+N LP E++ ++IS+ LWV + + R K ++ +I++ ++ GL
Sbjct: 64 ALPENQLPMELRASIISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 113
>gi|300024585|ref|YP_003757196.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526406|gb|ADJ24875.1| flagellar FlaF family protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 114
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 76/112 (67%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
+ Y ET+ +S+ R+ E +++S+S+L A K+ NS++AV+A+ + +R+W ++D
Sbjct: 3 KFSYEETLSDSAGRKRENERLAIEQSVSMLRSAEKAGANSREAVDAICFLNRLWSFLLED 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
LV +N LP +++ NLISIG+W+LKE + I KS ++ +IDV S++ +GL
Sbjct: 63 LVKPENALPDDIRANLISIGIWMLKEADAISSGKSKNFAGLIDVSSVIAEGL 114
>gi|115523196|ref|YP_780107.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris BisA53]
gi|115517143|gb|ABJ05127.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
Length = 115
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 64/110 (58%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y I++S+ E R RE+ LD I LL + EAL + ++W F+QDL
Sbjct: 5 SYDNMIEDSAHEARAREYQALDHGIDLLKRLQNGDLQPFEQTEALLFMRKLWTFFVQDLS 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
S N LP+ ++ LISIGLWV+KE +RIR+ K+ D+I + +I+RD L
Sbjct: 65 SPKNGLPESLRAELISIGLWVIKEADRIRQEKATDIDDLIAINTIIRDSL 114
>gi|254505115|ref|ZP_05117266.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
gi|222441186|gb|EEE47865.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
Length = 116
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 69/112 (61%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
Y E + I+ R EH + I+ L+ AH+ S +AV+ALFYT RVW F+++
Sbjct: 3 NLSYAEVMDNLCIDDRLNEHKAMCIIIAKLTAAHEKGVRSPEAVDALFYTRRVWGFFMEN 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L + N LP E + NLIS+G+WVLKE E +R+ + + DII++ SI+RD L
Sbjct: 63 LADDANQLPDETRANLISVGIWVLKEAEALRQWEREDFSDIIEINSIIRDSL 114
>gi|121602017|ref|YP_989380.1| flagellar biosynthesis regulatory protein FlaF [Bartonella
bacilliformis KC583]
gi|120614194|gb|ABM44795.1| Flaf protein [Bartonella bacilliformis KC583]
Length = 122
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 68/109 (62%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE + DR I LL A + P + +A EA+ + ++WV+ I+DL
Sbjct: 6 YEDVMEDDAMSARERERSLFDRCIKLLQDAKEKGPGTYEANEAVQFARKLWVILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+N LPQ +K +LISIG ++LKE +R+ + + ++++ +RDGL
Sbjct: 66 AENALPQTLKASLISIGFFILKEIQRLDEGEIADFDVLVEISESIRDGL 114
>gi|329889088|ref|ZP_08267431.1| protein flaF [Brevundimonas diminuta ATCC 11568]
gi|328844389|gb|EGF93953.1| protein flaF [Brevundimonas diminuta ATCC 11568]
Length = 120
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQD 61
Q Y +T + R+ E+ + + L A + ++AL + R+W
Sbjct: 4 QAY-KTAATRAESPREMEYRLFGQVTRALMHAATLDKSDVAGRMDALDWNRRLWSTLATA 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N +PQ ++ IS+ L+V + + R + + + +ID+ ++ GL
Sbjct: 63 CSDSANAMPQAMRAQFISLSLFVNRNTSEVMRGE-DDFSTLIDINRMIMQGL 113
>gi|92116893|ref|YP_576622.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
hamburgensis X14]
gi|91799787|gb|ABE62162.1| flagellar FlaF [Nitrobacter hamburgensis X14]
Length = 121
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
Q Y T Q SS R+ E L ++ L + + AL + R+W +F+
Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLQEIQNNWTGPDKNMHNALLFNRRLWSIFMSA 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
S+DN P EV+ N+ +IG++V+K+ + + +ID+ + GL
Sbjct: 65 ADSDDNQQPLEVRQNIANIGVFVMKQTIDMQMNPDPAKLKSLIDINCNLAAGL 117
>gi|75675299|ref|YP_317720.1| flagellar biosynthesis regulatory protein FlaF [Nitrobacter
winogradskyi Nb-255]
gi|74420169|gb|ABA04368.1| putative flagellar protein FlaF [Nitrobacter winogradskyi Nb-255]
Length = 121
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
Q Y T Q SS R+ E L ++ L +AL + R+W +F+
Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLREVQDKWEGPDNDMHKALLFNRRLWSIFMSA 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
S+ N P EV+ N+ +IG++V+K+ + +ID+ + GL
Sbjct: 65 ADSDSNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117
>gi|222053750|ref|YP_002536112.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
gi|221563039|gb|ACM19011.1| flagellar FlaF family protein [Geobacter sp. FRC-32]
Length = 128
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQD 61
Y IQ+ ++ R+ E +L R+ +L + K+ EAL + ++W F +
Sbjct: 9 YAN-IQKEALTGRELEASVLTRAAQMLKHCQDNWNAPDREKKLQEALKFNQKIWSFFQAE 67
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
L DN LP++++ +++S+ L+V K I +S +ID+ + GL+
Sbjct: 68 LSVPDNPLPKKLREDILSLSLFVDKRIFEIIAFPESEKLTIVIDINMNIAAGLR 121
>gi|85715037|ref|ZP_01046022.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
gi|85698234|gb|EAQ36106.1| putative flagellar protein FlaF [Nitrobacter sp. Nb-311A]
Length = 121
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
Q Y T Q SS R+ E L ++ L + +AL + R+W +F+
Sbjct: 6 QAYARTAQTSS-SPREIEAQALLKAARQLREIQEHWKGPDNDMHKALLFNRRLWSIFMSA 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
SE N P EV+ N+ +IG++V+K+ + +ID+ + GL
Sbjct: 65 ADSESNPQPLEVRQNIANIGVFVMKQTVDMQLNPDPAKLTALIDINCNLAAGL 117
>gi|27381966|ref|NP_773495.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
japonicum USDA 110]
gi|27355136|dbj|BAC52120.1| fliC [Bradyrhizobium japonicum USDA 110]
Length = 117
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 64/111 (57%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
+ Y ++ES + R RE L I L K + + V++L Y R+W +FI+DL
Sbjct: 7 EAYEAVVEESGYQERGRERQALSLGIDRLERIEKGPFSFEDLVQSLLYVRRLWTIFIEDL 66
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+N LP +++ ++ISIGLWV+KE +R+R KS +I++ ++RD L
Sbjct: 67 SHPENGLPDKLRADIISIGLWVIKEADRLREEKSGDVMQLIEINRLIRDAL 117
>gi|254294686|ref|YP_003060709.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
gi|254043217|gb|ACT60012.1| flagellar FlaF family protein [Hirschia baltica ATCC 49814]
Length = 134
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQD 61
Q Y +T + + R E + L A + V++L +VW D
Sbjct: 4 QAYQKTA-NRTADPRDVEFRLFAEVTRDLMEATKAEKHEISKVVKSLDKNRQVWNAMAMD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LP +++ +IS+ L+V + RN+S + +ID+ + GL
Sbjct: 63 CAQPGNALPDDLRAGIISLSLFVNRHTSEASRNRSE-IETLIDINRNIMQGL 113
>gi|260429492|ref|ZP_05783469.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
SE45]
gi|260420115|gb|EEX13368.1| flagellar biosynthesis regulatory protein FlaF [Citreicella sp.
SE45]
Length = 125
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDL 62
Y E S+ R E+ + R + A ++ P + Q VEAL+ R+W D+
Sbjct: 10 AYAENA-TSTRTDRATEYDLFARVTHRIKAAAEAGPKAYPQLVEALYDNRRLWTTLAVDV 68
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LPQE++ + + +V ++ K+ +++V + + GL
Sbjct: 69 ADPSNKLPQELRAQIFYLSEFVQLHTGKVLARKAR-LAPLLEVNAAIMRGL 118
>gi|319403981|emb|CBI77569.1| Flaf protein [Bartonella rochalimae ATCC BAA-1498]
Length = 122
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 67/109 (61%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE ++ DR I LL A P S +A +A+ + ++WV+ I+DL
Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGSCEAKDAVQFARKLWVILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL
Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114
>gi|163794166|ref|ZP_02188139.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
gi|159180780|gb|EDP65299.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
Length = 124
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 4 YYHETIQE-SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
Y T ++ R E+ +L + L A + ++ + A+ +VW VF+ DL
Sbjct: 6 AYRRTQGAVATQNGRDLEYRLLAQVTGALIKARDGMATLQERLNAILRNEKVWGVFLADL 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN LPQ++K + S+ L+V+KE + + + D+I + + GLK
Sbjct: 66 NHPDNGLPQQLKGGIASLALFVMKETQLVIDTNA-PLDDLILINRQIMAGLK 116
>gi|294679040|ref|YP_003579655.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
gi|294477860|gb|ADE87248.1| flagellar FlaF family protein [Rhodobacter capsulatus SB 1003]
Length = 125
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQ 60
+ Y Q + R E+ I R L A N V AL+ R+W
Sbjct: 8 KTAYANPGQPT-RTLRGTEYEIFARVTHRLKQAAGLDKSNFPAVVRALYDNRRLWTTLAV 66
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
D+ DN LP ++ + + + ++ + ++ S +ID+ + + GL+
Sbjct: 67 DVALPDNELPDTLRARIFYLNQFTQAHSAKVLKGEA-SIDVLIDINTAIMRGLR 119
>gi|149912825|ref|ZP_01901359.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
gi|149813231|gb|EDM73057.1| flagellar protein FlaF, putative [Roseobacter sp. AzwK-3b]
Length = 124
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 11 ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLP 70
++ R E+ R L+ A K+ + + AL+ R+W++ D+ + N LP
Sbjct: 16 RATNTPRDTEYDAFARVTRRLTAAAKTPGDVPELAAALYDNRRLWMILASDVALKSNPLP 75
Query: 71 QEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
++K LI + + ++ K+ + + +I+V V GL+
Sbjct: 76 GDLKARLIYLAEFAEVHGRKVLAGKATA-EPLIEVNRAVMQGLQ 118
>gi|319406997|emb|CBI80634.1| Flaf protein [Bartonella sp. 1-1C]
Length = 122
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 67/109 (61%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL
Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL
Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114
>gi|319898659|ref|YP_004158752.1| Flaf protein [Bartonella clarridgeiae 73]
gi|319402623|emb|CBI76168.1| Flaf protein [Bartonella clarridgeiae 73]
Length = 122
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 67/109 (61%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE ++ DR I LL A P + +A EA+ + ++WV+ I+DL
Sbjct: 6 YEDVMEDDAMSARERERFLFDRCIKLLLDAKMKGPGTCEAKEAVQFARKLWVILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL
Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114
>gi|158422274|ref|YP_001523566.1| flagellar biosynthesis regulatory protein FlaF [Azorhizobium
caulinodans ORS 571]
gi|158329163|dbj|BAF86648.1| flagellar FlaF protein [Azorhizobium caulinodans ORS 571]
Length = 115
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 68/113 (60%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
+ Y E +++SS E R RE DR++ LL A + ++ + A+ + R+W + I+D
Sbjct: 3 KFSYAEILEDSSTESRARERDAFDRALELLVSAESAGLDTPECRAAMLFLQRLWGLLIRD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
L +N L E++ +L+SIGLW ++E +R+ S+++ +I++ +RDGL+
Sbjct: 63 LTDANNELAPELRADLVSIGLWNIREADRVLEQSSSNFSGLININRTIRDGLQ 115
>gi|163738068|ref|ZP_02145484.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
gi|161388684|gb|EDQ13037.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis BS107]
Length = 123
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 13 SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+ + E+ ++ R + A + P + AL ++W +F ++ S N LP
Sbjct: 18 TRTAKNLEYEVIARVTRRMVAAAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPD 77
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
E+K L+S+G + + ++ K+ + ++++ + + GL+
Sbjct: 78 ELKAQLLSLGEFTHQHTSKVLARKA-DVRLLVEINTAIMRGLR 119
>gi|322421644|ref|YP_004200867.1| flagellar FlaF family protein [Geobacter sp. M18]
gi|320128031|gb|ADW15591.1| flagellar FlaF family protein [Geobacter sp. M18]
Length = 131
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLPNSK---QAVEALFYTSRVWVVFIQDLVSE 65
IQ+ S+ R+ E +L ++ +L +S + ++A+ Y +VW F +L
Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQESWDAPDRETKMLDAIKYNQKVWSFFQAELTEP 72
Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
+ +P++++ +L+++ L+V K + +ID+ + GL+
Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPTPEKLSIVIDINFNIAAGLR 122
>gi|209963551|ref|YP_002296466.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
gi|209957017|gb|ACI97653.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
Length = 124
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y ++++++ R+ EH + + + L + + + A+ R+W + DL
Sbjct: 10 AYRQSMRDTV-SPRQLEHRVFSQVTAELEVCTRQPDAF-ATIRAVDRNRRLWGALVTDLA 67
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
DN LP +K LIS+GLWV + + + +I+V V GL
Sbjct: 68 QPDNLLPDALKAGLISLGLWVNRYSSEVLT-EGRPLNPLIEVNRTVMQGL 116
>gi|115523546|ref|YP_780457.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris BisA53]
gi|115517493|gb|ABJ05477.1| flagellar FlaF family protein [Rhodopseudomonas palustris BisA53]
Length = 121
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQD 61
Q Y T Q+ R E L ++ L + P EAL + ++W +F+ D
Sbjct: 6 QAYARTAQK-VATPRDIEAQALLKAARKLQDVMATWPEGDVDFNEALMFNRKLWSLFVSD 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDGL 113
+ ++N E++ N+ +IG++VL + + + Q +ID+ + GL
Sbjct: 65 ALRDENPESIEIRQNIANIGIFVLTQSAALALKPEVERLQALIDINRNIAAGL 117
>gi|254500444|ref|ZP_05112595.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
gi|222436515|gb|EEE43194.1| Flagellar protein FlaF [Labrenzia alexandrii DFL-11]
Length = 125
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQ 60
Q Y +T Q + + R+ E +L ++ + L + + + +AL Y ++W V +
Sbjct: 7 QAYQKTSQAAPVSPRELEATLLMKAAARLQLIKDEWDDLSLAEVDDALIYNRKLWTVLVT 66
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114
SE++ LP E+K N+ S+G++V K+ + +I + + +GL+
Sbjct: 67 SATSEESSLPLEIKNNIGSLGVFVFKQTMTVITTQDPEKLGALISINRTIAEGLR 121
>gi|254418530|ref|ZP_05032254.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
gi|196184707|gb|EDX79683.1| Flagellar protein FlaF [Brevundimonas sp. BAL3]
Length = 121
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
Q Y + + R E+ + + L A ++AL + R+W D
Sbjct: 4 QAY-KAATSRAETPRDLEYRLFGQVTRALVHASTVDERDLATRIDALDWNRRLWSTLASD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LP ++ +IS+ L++ + + R + ++QD+I++ ++ GL
Sbjct: 63 CGDPANVLPASLRAQIISLSLFINRHSSAVMRGE-ETFQDLIEINRMMMQGL 113
>gi|319405424|emb|CBI79043.1| Flaf protein [Bartonella sp. AR 15-3]
Length = 122
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 67/109 (61%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + +++ ++ R+RE ++ DR I LL A P + +A +A+ + ++WV+ I+DL
Sbjct: 6 YEDIMEDDAMSARERERFLFDRCIKLLLAAKAKGPGTCEAKDAVQFARKLWVILIEDLGQ 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
N LPQ +K +LISIG ++LKE +++ + + ++++ +RDGL
Sbjct: 66 AANALPQALKASLISIGFFILKEIQKLDEGEITDFDVLVEISESIRDGL 114
>gi|323136998|ref|ZP_08072078.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
gi|322397759|gb|EFY00281.1| flagellar FlaF family protein [Methylocystis sp. ATCC 49242]
Length = 115
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
+Q Y E ES R +E L+ +I L++A P + +A EA Y R+W +F++D
Sbjct: 3 QQRYAEIASESGKNARAKEREALEIAIKKLAVAKTRGPLTPEAFEATNYLRRLWAIFMED 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L +++N LP+ ++ +LISIGLW+ +E + I S ++ +I+V ++ DGL
Sbjct: 63 LSNDENGLPESLRASLISIGLWIRREADLIDTGGSVNFDGLIEVNQLIADGL 114
>gi|253702413|ref|YP_003023602.1| flagellar biosynthesis regulatory protein FlaF [Geobacter sp. M21]
gi|251777263|gb|ACT19844.1| flagellar FlaF family protein [Geobacter sp. M21]
Length = 129
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65
IQ+ S+ R+ E +L ++ +L + + +EA+ Y +VW F +L
Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72
Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
+ +P++++ +L+++ L+V K + +ID+ + GL+
Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSPEKLGIVIDINFNIAAGLR 122
>gi|85706200|ref|ZP_01037295.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
gi|85669364|gb|EAQ24230.1| flagellar protein FlaF, putative [Roseovarius sp. 217]
Length = 124
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
Y Q + R E+ R L +A + AL R+W + D+
Sbjct: 10 AYRNQAQ-TIRTERGLEYDAFARITHRLGLAAAKGREDIHNLAAALHDNRRLWTILATDV 68
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
DN LP+E++ ++ + + + + S Q +ID+ + + GL
Sbjct: 69 ADPDNPLPKELRARIVYLAQFSHHHSTMVLNGDA-SIQPLIDINTAMMRGL 118
>gi|120266|sp|P21295|FLAF_CAUCR RecName: Full=Protein flaF
gi|40421|emb|CAA33231.1| unnamed protein product [Caulobacter crescentus CB15]
gi|13422828|gb|AAK23440.1| flaF protein [Caulobacter crescentus CB15]
Length = 102
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 19 REHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
E+ + + L A ++ + ++AL + +VW D +N LP E++ ++
Sbjct: 1 MEYRLFGQVTRALMDASQAPADDIATRIDALDWNRKVWSALATDCALPENQLPMELRASI 60
Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
IS+ LWV + + R K ++ +I++ ++ GL
Sbjct: 61 ISLSLWVGRHSSAVMR-KEEDFEPLIEINRMIMQGL 95
>gi|39936974|ref|NP_949250.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris CGA009]
gi|192292802|ref|YP_001993407.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris TIE-1]
gi|39650831|emb|CAE29354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192286551|gb|ACF02932.1| flagellar FlaF family protein [Rhodopseudomonas palustris TIE-1]
Length = 122
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
Q Y T Q + R+ E L ++ L + EAL + ++W +F+
Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWEEKGAIGLQEALLFNRKLWSIFVT 64
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+ + +DN E++ N+ +IG++V+ + + + + Q +ID+ + GL
Sbjct: 65 EAMRDDNPQSIEIRQNIANIGVFVMSQSSALQIKPEVERLQALIDINRNIAAGL 118
>gi|197120104|ref|YP_002140531.1| flagellar biosynthesis regulatory protein FlaF [Geobacter
bemidjiensis Bem]
gi|197089464|gb|ACH40735.1| flagellar biogenesis regulator FlaF [Geobacter bemidjiensis Bem]
Length = 129
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSLP---NSKQAVEALFYTSRVWVVFIQDLVSE 65
IQ+ S+ R+ E +L ++ +L + + +EA+ Y +VW F +L
Sbjct: 13 IQKESMSGRELEASVLTKAGLMLKAVQDNWDAPDREAKMLEAIKYNQKVWSFFQAELSEP 72
Query: 66 DNHLPQEVKLNLISIGLWVLKECERIRR-NKSNSYQDIIDVISIVRDGLK 114
+ +P++++ +L+++ L+V K + + ++D+ + GL+
Sbjct: 73 GHPMPKKLREDLLNLSLFVDKRFFEVMAFPSAEKLGIVVDINFNIAAGLR 122
>gi|99082813|ref|YP_614967.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria sp.
TM1040]
gi|99039093|gb|ABF65705.1| FlaF protein [Ruegeria sp. TM1040]
Length = 123
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 13 SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+ R E+ IL R + +A + K V A+ ++W +F DL E N LP
Sbjct: 18 TRTARNTEYEILARITHRMIVADSKGSDGFKDLVAAVSDNRKLWTLFTSDLAKEGNKLPT 77
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
E+K L + + + ++ K+ S Q ++++ + + GL+
Sbjct: 78 ELKQRLFHLARFTREHTSKVLARKA-SVQPLVEINTAIMRGLR 119
>gi|86750907|ref|YP_487403.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris HaA2]
gi|86573935|gb|ABD08492.1| Flagellar FlaF [Rhodopseudomonas palustris HaA2]
Length = 122
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
Q Y T Q + R+ E L ++ L S AL + ++W +F+
Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAARQLQDVVTSWDERGAIGLDAALMFNRKLWSIFVS 64
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
D + +DN E++ N+ +IG++VL + + + +I++ + GL
Sbjct: 65 DAMRDDNPQTLEIRQNIANIGVFVLSQSTALQMSPQVEPLNALIEINRNIAAGL 118
>gi|90422627|ref|YP_530997.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris BisB18]
gi|90104641|gb|ABD86678.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
Length = 115
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 62/110 (56%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y I++S E R RE L I LL+ S VEAL Y R+W F+ DL
Sbjct: 5 SYDTVIEDSGQEARARERLALSHGIDLLTRLQSGDLRSPDDVEALLYIRRLWTFFVLDLS 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
S N LP++++ +LISIG WV+KE +RIR+ K+ ++I V ++RD L
Sbjct: 65 SPRNGLPEKLRADLISIGFWVIKEADRIRQEKATDIAELIAVNVVIRDSL 114
>gi|259418039|ref|ZP_05741958.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
TrichCH4B]
gi|259346945|gb|EEW58759.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter sp.
TrichCH4B]
Length = 123
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 13 SIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+ R E+ IL R + +A+ + K V A+ ++W +F DL + N LP
Sbjct: 18 TRTARNTEYEILARITHRMIVANGKGSDGFKDLVAAVSDNRKLWTLFTSDLAKDGNKLPD 77
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
E+K L + + + ++ K+ S Q ++++ + + GL+
Sbjct: 78 ELKQRLFHLARFTREHSSKVLARKA-SVQPLVEINTAIMRGLR 119
>gi|316932810|ref|YP_004107792.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
gi|315600524|gb|ADU43059.1| flagellar FlaF family protein [Rhodopseudomonas palustris DX-1]
Length = 122
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
Q Y T Q + R+ E L ++ L + EAL + ++W +F+
Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAAKQLQDVVTNWDEKGAIGLQEALMFNRKLWSIFVS 64
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+ + +DN E++ N+ +IG++VL + + + + Q +ID+ + GL
Sbjct: 65 EAMRDDNPQSIEIRQNIANIGVFVLSQSSALQIKPEVERLQALIDINRNIAAGL 118
>gi|220921350|ref|YP_002496651.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
gi|219945956|gb|ACL56348.1| flagellar FlaF family protein [Methylobacterium nodulans ORS 2060]
Length = 121
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQD 61
Y + Q ++ R+ E +L ++ + L + + EAL + +VW +
Sbjct: 6 HAYAKVSQ-VALTPREAEAAVLIKAAARLQAVQDNWAEQQAGLNEALTFNQKVWTLLSTA 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
D LP E+K ++ +G +V + + + +I + + GL+
Sbjct: 65 ATEPDAPLPPELKQSMARLGAFVFTRTFDAMVEPAAEKLTALIRINREIASGLR 118
>gi|91976151|ref|YP_568810.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris BisB5]
gi|91682607|gb|ABE38909.1| flagellar FlaF [Rhodopseudomonas palustris BisB5]
Length = 122
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ--AVEALFYTSRVWVVFIQ 60
Q Y T Q + R+ E L ++ L + EAL + ++W +F+
Sbjct: 6 QAYARTAQRT-ASPREIEAQALLKAARQLQDIVTNWSERGAIGLNEALMFNRKLWSIFVS 64
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
D + +DN E++ N+ +IG++VL + + + + + +I++ + GL
Sbjct: 65 DAMRDDNPQSIEIRQNIANIGVFVLSQSAALQMKAEVEPLKALIEINRNIAAGL 118
>gi|254475812|ref|ZP_05089198.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
gi|214030055|gb|EEB70890.1| flagellar protein FlaF, putative [Ruegeria sp. R11]
Length = 123
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 13 SIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+ + E+ ++ R + A + P K+ VEAL ++W +F ++ + +N LP+
Sbjct: 18 TRTAKNLEYEVIARITRRMVAAAQKGRPGFKELVEALKDNRKLWSIFADEVANPENPLPE 77
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
++K L+ + + + ++ K+ + ++++ + + GL+
Sbjct: 78 DLKSQLLYLREFTNQHTSKVMARKA-DVRMLVEINTAIMRGLR 119
>gi|118581735|ref|YP_902985.1| flagellar biosynthesis regulatory protein FlaF [Pelobacter
propionicus DSM 2379]
gi|118504445|gb|ABL00928.1| flagellar FlaF family protein [Pelobacter propionicus DSM 2379]
Length = 127
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVF 58
R Y + + + R+ E +L ++ L + + EA+ Y +VW F
Sbjct: 5 RTAYEQ-QSKQFMSPRELEASVLTKAGLKLKQCQEKWNTPERNALLDEAIRYNQKVWSFF 63
Query: 59 IQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK--SNSYQDIIDVISIVRDGLK 114
+L DN LPQ+++ +++++ L++ K + +ID+ + GL+
Sbjct: 64 QSELSMPDNPLPQKLREDILNLSLFIDKRLFEVLAFPNAPERLTIVIDINFNIAAGLR 121
>gi|149203154|ref|ZP_01880125.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
gi|149143700|gb|EDM31736.1| flagellar protein FlaF, putative [Roseovarius sp. TM1035]
Length = 125
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 2/114 (1%)
Query: 1 MRQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFI 59
+ Q + S R E+ R L A + + AL R+W +
Sbjct: 6 LAQSAYRDQSRSVRTDRGLEYDAFARITQRLVHAAGQDPRDIASLAVALHDNRRLWTILA 65
Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D+ N LPQ ++ ++ + + + + S Q +ID+ + + GL
Sbjct: 66 TDVADPQNPLPQSLRAQVVYLAQFCHHHSSAVLNTNA-SLQPLIDINTAIMRGL 118
>gi|189426400|ref|YP_001953577.1| flagellar biosynthesis regulatory protein FlaF [Geobacter lovleyi
SZ]
gi|189422659|gb|ACD97057.1| flagellar FlaF family protein [Geobacter lovleyi SZ]
Length = 125
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 9 IQESSIECRKREHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSE 65
+Q+ ++ R+ E +L R+ +L ++ ++ +EA+ + +VW F +L
Sbjct: 12 MQKETLSGRELEASVLTRAGLMLKQVQENWAAPDRDEKLLEAIKFNQKVWSFFQAELSDP 71
Query: 66 DNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
+N LP +K +++++ L++ K + + ++D+ + GL+
Sbjct: 72 ENPLPTALKQDILNLSLFIDKRLFEVMADPDKDKLTIVVDIDFNIAAGLR 121
>gi|254509559|ref|ZP_05121626.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
gi|221533270|gb|EEE36258.1| flagellar FlaF family protein [Rhodobacteraceae bacterium KLH11]
Length = 124
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDL 62
Y ++ + R E+ + + L A + V+AL R+W V +
Sbjct: 10 AYAQSAVPT-RTPRDTEYEAISKITHRLKAAAARKGTDFGGFVQALHENRRLWNVLATGV 68
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+N LP ++ + + + ++ NK+ + ++++ V GL+
Sbjct: 69 ADTENALPSALRARIFYLAEFTEHHSSQVLGNKA-GVEPLLEINMAVLRGLR 119
>gi|126738587|ref|ZP_01754292.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
gi|126720386|gb|EBA17092.1| flagellar protein FlaF, putative [Roseobacter sp. SK209-2-6]
Length = 128
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 13 SIECRKREHWILDRSISLLSIA------HKSLPNSKQAVEALFYTSRVWVVFIQDLVSED 66
+ + E+ ++ R+ L A K AL ++W +F DL++++
Sbjct: 18 TRTTKDNEYEVVARATHKLLAAHKVANAKSGPEGFKVLASALHTNRKMWNIFEVDLLAKE 77
Query: 67 NHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
N LPQEVK NL+ + + + ++ K+ + ++++ + + GL+
Sbjct: 78 NQLPQEVKTNLLYLAEFTRQHTSKVLSRKA-GIKPLVEINTAIMRGLR 124
>gi|144897700|emb|CAM74564.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
Length = 145
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 5 YHETIQES---SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQD 61
Y +T S R+ E W L + +S+A K ++ + A+ R+W +F +
Sbjct: 6 YGQTPYNSVPQPGNPRQTEAWALTEAARRMSLAQKEGVATEDLLVAVRLNWRLWTIFQAE 65
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNK-SNSYQDIIDVISIVRDGL 113
L E++ LP +++++++S+ ++ K I +I++ + GL
Sbjct: 66 LSGEESALPDQMRMDMLSLCNFIDKRSVDIIAEPLPEKLDVLININRQIAAGL 118
>gi|254465480|ref|ZP_05078891.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
gi|206686388|gb|EDZ46870.1| flagellar protein FlaF, putative [Rhodobacterales bacterium Y4I]
Length = 123
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN-SKQAVEALFYTSRVWVVFIQDL 62
Y + + + E+ ++ R L A + + + +AL ++W +F DL
Sbjct: 10 AYS-AAKTPTRTAKNFEYEVVTRVTRRLITAAQKGSDGFNELAQALNDNRKLWSIFTADL 68
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ N LP +K NL + + + ++ + K+ + + ++++ + + GL+
Sbjct: 69 AMKSNPLPDNLKQNLFELAEFTRQHTSKVLQRKA-NVRPLVEINTAILRGLR 119
>gi|12330683|gb|AAG52880.1| FlaF [Brucella abortus]
Length = 104
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 66/99 (66%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + + + ++RE + DRSI++L A + S++ ++A ++TS++W I DL S
Sbjct: 6 YEDVMNDDMASAKERERMLFDRSIAMLEAARANGAESREGIDAAYFTSKLWTTIIDDLGS 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDII 103
E+N LP+E++ +ISIG++VLKE ERIR+ +SN Y +I
Sbjct: 66 EENALPKELRAAIISIGIFVLKEIERIRQGESNDYATLI 104
>gi|110677571|ref|YP_680578.1| flagellar biosynthesis regulatory protein FlaF [Roseobacter
denitrificans OCh 114]
gi|109453687|gb|ABG29892.1| flagellar protein, putative [Roseobacter denitrificans OCh 114]
Length = 123
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y T Q R E+ ++ R + A + + EAL +++W D+
Sbjct: 10 AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN LP E++ ++ + + + ++ R K+ + ++++ + + GLK
Sbjct: 68 NPDNLLPDELRARIVYLADFTRQHSHKVMR-KTETAVPLLEINAAILKGLK 117
>gi|114798597|ref|YP_758996.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
neptunium ATCC 15444]
gi|114738771|gb|ABI76896.1| putative flagellar biosynthesis regulatory protein [Hyphomonas
neptunium ATCC 15444]
Length = 128
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV-EALFYTSRVWVVFIQ 60
+ Y + Q + R E+ + ++ L H + A +A++ ++W +
Sbjct: 6 YKAYGQVTQRT-ATGRALEYAVFEQITRDLQSVHDDGGANTGAWGDAIYRNLQLWTIIAT 64
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
DL+S +N LP E K LIS+ +V + +I +DII+V + GL
Sbjct: 65 DLLSAENALPDETKAGLISLSEFVRRTSMKILSGT-EGLEDIIEVNRTIMAGL 116
>gi|209884515|ref|YP_002288372.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
gi|209872711|gb|ACI92507.1| flagellar FlaF [Oligotropha carboxidovorans OM5]
Length = 121
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-QAVEALFYTSRVWVVFIQDL 62
Y Q ++ R+ E L ++ L + + AL + ++W + + +
Sbjct: 7 AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKADVDVSGALLFNRKLWSILLSAV 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
S+++ E++ N+ +IG +V+ + + K + +I++ + GL
Sbjct: 66 TSDESPQSIEIRQNIANIGTFVMTQTAEMQIAPKPELLKPLIEINCNLAAGL 117
>gi|15964435|ref|NP_384788.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
meliloti 1021]
gi|307318932|ref|ZP_07598363.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
gi|10998531|gb|AAG25961.1|AF300968_3 FlaF [Sinorhizobium meliloti]
gi|15073612|emb|CAC45254.1| Putative flagellin synthesis regulator [Sinorhizobium meliloti
1021]
gi|306895346|gb|EFN26101.1| flagellar FlaF family protein [Sinorhizobium meliloti AK83]
Length = 115
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 50/111 (45%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI+DL
Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIEAVYFTRRLWIRFIEDLR 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115
>gi|163794169|ref|ZP_02188142.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
gi|159180783|gb|EDP65302.1| flagellar FlaF family protein [alpha proteobacterium BAL199]
Length = 143
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHK-------SLPNSKQAVEALFYTSRV 54
Y TI++++ R E+ +L + S L + + Q ++AL + ++V
Sbjct: 4 YDAYKRTIKQTAA-PRDVEYRLLAQVTSGLMKSKELREGSNRDPRRMAQIMDALNWNNQV 62
Query: 55 WVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
W F++D+ +E N LP+E++ ++S+G+WV +E + + +I V + GL
Sbjct: 63 WDAFVEDVGTEGNMLPRELRAAIVSLGIWVTRETALVTSGEG-DIDALIAVNRAIMRGL 120
>gi|299131798|ref|ZP_07024993.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
gi|298591935|gb|EFI52135.1| flagellar FlaF family protein [Afipia sp. 1NLS2]
Length = 121
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
Y Q ++ R+ E L ++ L + AL + ++W + + +
Sbjct: 7 AYARVAQ-TTSSPREIEAQALLKAARQLQDVMSNWGKAGTDVSGALLFNRKLWSILLSAV 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
S+++ E++ N+ +IG +VL + + K + +I++ + GL
Sbjct: 66 TSDESPQSIEIRQNIANIGTFVLSQTAEMQIAPKPELLKPLIEINCNLAAGL 117
>gi|304392490|ref|ZP_07374430.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
R2A130]
gi|303295120|gb|EFL89480.1| flagellar biosynthesis regulatory protein FlaF [Ahrensia sp.
R2A130]
Length = 117
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 66/111 (59%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y ET S R E +L +SI LL +A + SK AVEA+++T+R+W FI+DL
Sbjct: 7 GYAETNANSGKAARAGERALLRQSIDLLKLAKEQGTQSKAAVEAVYFTNRLWTAFIEDLG 66
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
E+N L ++ NLISIG+ +L+ RIR + +I++V I+ DGL+
Sbjct: 67 GEENRLEPTLRANLISIGISILRSTGRIREGDETAIDEIVEVSGIILDGLR 117
>gi|296531759|ref|ZP_06894581.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
gi|296267898|gb|EFH13703.1| possible flaF protein [Roseomonas cervicalis ATCC 49957]
Length = 141
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y I+ + + R E+ +L R+ SLL A + EA+ VW F DL
Sbjct: 23 AYGSVIRGT-EDPRDIEYRVLARATSLLEAAQRPNAGPSALPEAIHENRMVWTAFAADLA 81
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+E+N K L+S+ WV E ER+ R S + DV V GLK
Sbjct: 82 AEENGWDMVTKGRLLSLARWVFAESERVLRG-GRSPHALCDVNRAVMAGLK 131
>gi|150395506|ref|YP_001325973.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
medicae WSM419]
gi|150027021|gb|ABR59138.1| flagellar FlaF family protein [Sinorhizobium medicae WSM419]
Length = 115
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/111 (45%), Positives = 81/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E ++E + RE +LDRSI+LL A + +++A+EA+++T R+W+ FI+DL
Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKNGYTREAIEAVYFTRRLWIRFIEDLR 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115
>gi|163744337|ref|ZP_02151697.1| flaF protein [Oceanibulbus indolifex HEL-45]
gi|161381155|gb|EDQ05564.1| flaF protein [Oceanibulbus indolifex HEL-45]
Length = 134
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
Y TI+ES R+ E IL R L+ + ++ +AL+
Sbjct: 5 AYKRTIRES-ETPRQIERRILSRVTHDLAEKGQGFDATEDKSERLNILSTGLRDALYENQ 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
R W DL N +P +K +LISI LWV + + + ++++ + G
Sbjct: 64 RFWSALRYDLAEPGNTMPDALKASLISIALWVERHSTALMAGEGR-LAGLVEINGNIAAG 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|114765256|ref|ZP_01444388.1| flaF protein [Pelagibaca bermudensis HTCC2601]
gi|114542391|gb|EAU45419.1| flaF protein [Roseovarius sp. HTCC2601]
Length = 145
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
Y +TI+ES ++ E + R + + ++ +A+
Sbjct: 5 AYKQTIRES-ASPKQIEARVFARITGSMEQHRANWLAARDKFARTAVLAHGLRDAVAENR 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
+W DL E+N LP E++ NL+SI +WV + C + + +IDV + G
Sbjct: 64 VLWSRLRTDLTDENNQLPAELRANLLSIAMWVDRTCGVVIGG-GDGLPALIDVNQNILGG 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|163733163|ref|ZP_02140607.1| flagellar protein, putative [Roseobacter litoralis Och 149]
gi|161393698|gb|EDQ18023.1| flagellar protein, putative [Roseobacter litoralis Och 149]
Length = 123
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y T Q R E+ ++ R + A + + EAL +++W D+
Sbjct: 10 AYAPT-QAPIKTARSTEYEVIARISHRMKRAMQQ-DDFPALAEALHENNKLWTTLAIDVG 67
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN LP E++ ++ + + ++ R K+ + ++++ + + GLK
Sbjct: 68 NPDNLLPDELRARIVYLADFTRLHSHKVMR-KTETAVPLLEINAAILKGLK 117
>gi|227820878|ref|YP_002824848.1| flagellar biosynthesis regulatory protein FlaF [Sinorhizobium
fredii NGR234]
gi|227339877|gb|ACP24095.1| predicted flagellar protein FlaF [Sinorhizobium fredii NGR234]
Length = 115
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/111 (46%), Positives = 79/111 (71%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E ++E + RE +L+RSI+LL A + S++A+EA++YT RVW+ FI+DL
Sbjct: 5 AYAEIMEEGVAVSKDREWQVLNRSIALLEAAKQQKGYSREAIEAIYYTRRVWIRFIEDLR 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN L E++ NLISIG+W+L E E+IR+ S+++Q IID+ +I+RDGLK
Sbjct: 65 APDNQLNDELRANLISIGIWILNETEKIRKRDSSNFQGIIDITTIIRDGLK 115
>gi|27380953|ref|NP_772482.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium
japonicum USDA 110]
gi|27354119|dbj|BAC51107.1| bll5842 [Bradyrhizobium japonicum USDA 110]
Length = 122
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQA-VEALFYTSRVWVVFIQDL 62
Y ++ R E L ++ + L A + + ++AL + ++W +F+ +
Sbjct: 8 AYARVA-TTTASPRDIEAQTLLKAANKLQDAVNNADPLSEQTMQALMFNRKLWTIFLSEA 66
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+ ++N P +V+ + +I ++VL + + + + ++ +I++ + GL
Sbjct: 67 MRDNNPQPIDVRQKIANISVFVLSQTAALQMSPQFDHFRPLIEINRNIAAGL 118
>gi|197104849|ref|YP_002130226.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
HLK1]
gi|196478269|gb|ACG77797.1| Flagellar biosynthesis regulator FlaF [Phenylobacterium zucineum
HLK1]
Length = 104
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 19 REHWILDRSISLLSIAHK-SLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
E+ + + L A K + K ++AL + RVW V D N LP+E++ ++
Sbjct: 1 MEYRLFAQVTRALMEAAKLPADDLKGRMDALDWNRRVWSVLGADCQQTGNGLPRELRASI 60
Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
IS+ +WV K + R + + +I++ ++ GL
Sbjct: 61 ISLSIWVGKHTSLVIRQQEE-IEPLIEINRMIMQGL 95
>gi|307311577|ref|ZP_07591218.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
gi|306899594|gb|EFN30223.1| flagellar FlaF family protein [Sinorhizobium meliloti BL225C]
Length = 115
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/111 (44%), Positives = 80/111 (72%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y E ++E + RE +LDRSI+LL A + +++A+ A+++T R+W+ FI+DL
Sbjct: 5 AYAEIMEEGVAVSKDREKQVLDRSIALLQAAKEKDGYTREAIAAVYFTRRLWIRFIEDLR 64
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ DN L +E++ NLISIG+W+L E E+IR+ +S+++Q IID+ +I+RDGLK
Sbjct: 65 APDNQLNEELRANLISIGIWILNETEKIRKRESSNFQGIIDITTIIRDGLK 115
>gi|188579928|ref|YP_001923373.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
populi BJ001]
gi|179343426|gb|ACB78838.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
Length = 116
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLS-IAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
R Y E ++++ R+RE DR++ LL + + A+ +W V I
Sbjct: 3 RLSYSEIMEDAPDLGREREREAFDRALGLLRTAEAQGAGAGAERNSAVGSIQELWNVLIS 62
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+
Sbjct: 63 DLLDPENGLPEGLRADLVAIGLWNMREAGEVLSTPERSLSALIEVNTSIRDGLR 116
>gi|84502365|ref|ZP_01000501.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
gi|84389177|gb|EAQ01974.1| hypothetical protein OB2597_20156 [Oceanicola batsensis HTCC2597]
Length = 132
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLS-----------IAHKSLPNSKQAVEALFYTS 52
Y TI+ES R+ E + R L A ++ + L
Sbjct: 5 AYKRTIRES-ESPRQIERRVFLRVTGELEKKSTPFDKAASRADRADLLAGGLRSHLAENL 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
++W DL +N LP ++K LIS+ L+V ++ S ++ + + G
Sbjct: 64 KLWSTIKHDLSQPENGLPVQLKAGLISLALFVERQTANCLGG-SAGLGVLVQINQNLISG 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|170751769|ref|YP_001758029.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
2831]
gi|170658291|gb|ACB27346.1| flagellar FlaF family protein [Methylobacterium radiotolerans JCM
2831]
Length = 123
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAV--EALFYTSRVWVVFIQD 61
Y +T S++ R+ E +L ++ L A + L + EAL + RVW + +
Sbjct: 7 AYAKT-SHSALSPREAESAVLLKAAQKLIGASQGLASGDAGRINEALTFNQRVWTLLTSE 65
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
S+ N LP +VK + +G++VL+ C + + ++ + + + GL+
Sbjct: 66 ATSDVNPLPADVKQGVGRLGVFVLQSCIDTMIAPTPEKIATLVSINNHIAAGLQ 119
>gi|83944194|ref|ZP_00956650.1| flaF protein [Sulfitobacter sp. EE-36]
gi|83845061|gb|EAP82942.1| flaF protein [Sulfitobacter sp. EE-36]
Length = 133
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
Y TI + + R+ E IL S L ++ + + + L+
Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + DG
Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIIDG 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|170739223|ref|YP_001767878.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
gi|168193497|gb|ACA15444.1| flagellar FlaF family protein [Methylobacterium sp. 4-46]
Length = 121
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-AVEALFYTSRVWVVFIQDL 62
Y + Q +++ R+ E +L ++ + L + + + EAL + +VW +
Sbjct: 7 AYAKVAQ-AALTPREAEAAVLIKAAARLQAIQDNWTDQQAGLNEALTFNQKVWTLLSTAA 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
D LP ++K ++ +G +V + + + +I + + GL+
Sbjct: 66 TEPDAPLPADLKQSMAQLGAFVFTRTFDAMIEPHAEKLTALIRINRELASGLR 118
>gi|182680454|ref|YP_001834600.1| flagellar biosynthesis regulatory protein FlaF [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182636337|gb|ACB97111.1| flagellar FlaF family protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 91
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 61/91 (67%)
Query: 24 LDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
+D ++ LL A +S +EAL Y R+W + ++DL + DN LP+ ++ +L+S+G+W
Sbjct: 1 MDHALDLLENARNKGASSIACIEALSYLCRLWTLLMEDLANPDNDLPEVLRADLLSVGIW 60
Query: 84 VLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+LKE + I++ S++ +I++ +++RDGLK
Sbjct: 61 ILKETDAIQKGTSDNLVGLIEICTLIRDGLK 91
>gi|90423003|ref|YP_531373.1| flagellar biosynthesis regulatory protein FlaF [Rhodopseudomonas
palustris BisB18]
gi|90105017|gb|ABD87054.1| flagellar FlaF [Rhodopseudomonas palustris BisB18]
Length = 121
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61
Q Y T Q+ R E L ++ L A + S AL + ++W +F+ D
Sbjct: 6 QAYARTAQQ-IASPRDIEAQALLKAARQLQDAVTNWNESDSGLNAALIFNRKLWSIFVSD 64
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+S+ N ++ N+ +IG++VL +C + + + + +I++ + GL
Sbjct: 65 AISDANPEAIAIRQNIANIGIFVLTQCAALQVKPERDRLHALIEINRNIATGL 117
>gi|56698281|ref|YP_168654.1| flagellar biosynthesis regulatory protein FlaF [Ruegeria pomeroyi
DSS-3]
gi|56680018|gb|AAV96684.1| flagellar protein FlaF, putative [Ruegeria pomeroyi DSS-3]
Length = 125
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLL-SIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
RQ Y + R E+ +L R + S A + + VEAL +R+W V
Sbjct: 8 RQAYS-AASAPTRTPRNMEYEVLSRITHRMHSAAKRGRAGFGELVEALHENNRLWGVLAA 66
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
++ +N LP +++ L + + ++ R +++ + ++++ + V GL+
Sbjct: 67 NVAEGENALPPDLRARLFYLAEFTQVHTSKVLRREASP-RPLLEINTAVLRGLR 119
>gi|114570513|ref|YP_757193.1| flagellar biosynthesis regulatory protein FlaF [Maricaulis maris
MCS10]
gi|114340975|gb|ABI66255.1| flagellar FlaF family protein [Maricaulis maris MCS10]
Length = 126
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQD 61
Q Y ++ + + R E+ + + L A S + +A+ + RVW D
Sbjct: 4 QAYQKSAAR-AEDPRATEYRLFAQVTRSLMNAKSLPIESLQDRAQAIDWNRRVWSNLALD 62
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
S+DN LP+ ++ +IS+ ++V K+ RN + D++D+ V GL
Sbjct: 63 CASQDNKLPEALRAAIISLSIFVSKQGSHAMRNP-EAIDDLVDINRTVMQGL 113
>gi|312115277|ref|YP_004012873.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
gi|311220406|gb|ADP71774.1| flagellar FlaF family protein [Rhodomicrobium vannielii ATCC 17100]
Length = 115
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/110 (41%), Positives = 64/110 (58%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y E + R E + RSI+LL ++ S +A+EAL YT R+WV FI+ L
Sbjct: 6 YQEALATDVRMARSTERASILRSINLLQRGAEAGSRSAEAIEALLYTKRLWVFFIEQLGL 65
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN LP +++ +LISIG+ VL+ E IRR +S + IIDV V +GLK
Sbjct: 66 PDNRLPHKLRADLISIGIAVLRRIEAIRRGESKDFGFIIDVSRSVAEGLK 115
>gi|83955106|ref|ZP_00963762.1| flaF protein [Sulfitobacter sp. NAS-14.1]
gi|83840435|gb|EAP79608.1| flaF protein [Sulfitobacter sp. NAS-14.1]
Length = 133
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQ-----------AVEALFYTS 52
Y TI + + R+ E IL S L ++ + + + L+
Sbjct: 5 AYKRTISHT-EDPRQIERRILASVTSKLENKFEAFDGAAEKSQKLQMLADGLRDTLWENQ 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
RVW+ F DL +DN L +++ LIS+ LWV + + S + + +ID+ + +G
Sbjct: 64 RVWLTFKADLAEKDNGLTADLRAALISLALWVENHTKAVLSG-SKNVKPLIDINRSIING 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|188580879|ref|YP_001924324.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
gi|179344377|gb|ACB79789.1| flagellar FlaF family protein [Methylobacterium populi BJ001]
Length = 124
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + + ++ R+ E +L ++ L + EAL + RVW +
Sbjct: 7 AYAKVAR-VALSPREAEAAVLLKAAGRLQALGAGVEAGPALNEALGFNQRVWTILASAAT 65
Query: 64 SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
N LP +V+ + + +V + + + ++ + + + GL+
Sbjct: 66 DPANPLPVDVRHGMAQLSAYVFHTIMDTMIEPTREKIESLVSLNNHIAAGLQ 117
>gi|126464888|ref|YP_001041864.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
sphaeroides ATCC 17029]
gi|126106703|gb|ABN79228.1| flagellar FlaF family protein [Rhodobacter sphaeroides ATCC 17029]
Length = 121
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
R Y Q S+ R E+ +L + +LL + +A+ ++W+ F
Sbjct: 3 RTAYSAASQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D+ DN LP++++ + + V + R+ +++++ ++D+ V GL
Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114
>gi|154252991|ref|YP_001413815.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
gi|154156941|gb|ABS64158.1| flagellar FlaF family protein [Parvibaculum lavamentivorans DS-1]
Length = 125
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQ 60
Y + ++ + R+ E IL R+ L + N + +AL Y R+W VF
Sbjct: 6 DAYANASRMATKDPREFEATILTRAAGQLQRIRDNWTNETASALRDALLYNRRIWTVFAA 65
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI---RRNKSNSYQDIIDVISIVRDGL 113
+++ LP+E+K N+ ++ +++ K I R +I + + GL
Sbjct: 66 SAAEKEHPLPREIKQNIANLAIFIFKRTSEIESSREPAPQLLDTLIMINREIAAGL 121
>gi|119384358|ref|YP_915414.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
gi|119374125|gb|ABL69718.1| flagellar FlaF family protein [Paracoccus denitrificans PD1222]
Length = 121
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 17 RKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
R E++ + L A +S +EA ++++W + +L+ +N LP ++K
Sbjct: 21 RDNEYFAFSQVTQTLKRACQSGDRYL-MIEAAHSSNQLWTIVATNLMHPENTLPSDIKAG 79
Query: 77 LISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
L+S+ + LK+ + +I+V + GL+
Sbjct: 80 LLSLAFFSLKQGHHVIS-SGVPADPLIEVNMRIMRGLR 116
>gi|288962698|ref|YP_003452992.1| FliL protein [Azospirillum sp. B510]
gi|288914964|dbj|BAI76448.1| FliL protein [Azospirillum sp. B510]
Length = 132
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
YH+TI E + RK E+ + R L + S +AL+ +W DL+
Sbjct: 5 AYHQTIAE-CDDPRKIEYRVFLRITLALEQNRDADWRSAALKDALWRNLELWNALRADLL 63
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+ N LP+ ++ L+S+ V + +R+ R + ++ + V GL+
Sbjct: 64 EDGNALPEALRAGLVSLSFAVNRNTQRVLRGEG-GIDLLLHINRSVMQGLQ 113
>gi|221634510|ref|YP_002523198.1| FlaF protein [Rhodobacter sphaeroides KD131]
gi|221163383|gb|ACM04345.1| FlaF protein [Rhodobacter sphaeroides KD131]
Length = 126
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
R Y Q S+ R E+ +L + +LL + +A+ ++W+ F
Sbjct: 8 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 67
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D+ DN LP++++ + + V + R+ +++++ ++D+ V GL
Sbjct: 68 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 119
>gi|114762155|ref|ZP_01441623.1| flagellar protein FlaF, putative [Pelagibaca bermudensis HTCC2601]
gi|114545179|gb|EAU48182.1| flagellar protein FlaF, putative [Roseovarius sp. HTCC2601]
Length = 125
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 11 ESSIECRKREHWILDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHL 69
S+ R E+ +L R + A ++ P + + V AL+ R+W D+ S +N L
Sbjct: 16 TSTRTDRAIEYDLLARVTHRIKSAAEAGPKAYPRLVRALYDNRRLWTALAVDVASTENAL 75
Query: 70 PQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
PQE++ + + +V ++ K+ +++V + + GL
Sbjct: 76 PQELRAQIFYLAEFVQLHTGKVLARKAR-LAPLLEVNAAILRGL 118
>gi|125654645|ref|YP_001033839.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
sphaeroides 2.4.1]
gi|332561332|ref|ZP_08415647.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
sphaeroides WS8N]
gi|77386305|gb|ABA81734.1| possible FlaF protein [Rhodobacter sphaeroides 2.4.1]
gi|332274131|gb|EGJ19448.1| flagellar biosynthesis regulatory protein FlaF [Rhodobacter
sphaeroides WS8N]
Length = 121
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQ 60
R Y Q S+ R E+ +L + +LL + +A+ ++W+ F
Sbjct: 3 RTAYSAARQGSARTPRSTEYALLAKVTALLKETDRHDALAFPALAQAIEQNRKLWLRFAL 62
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D+ DN LP++++ + + V + R+ +++++ ++D+ V GL
Sbjct: 63 DVAHPDNELPRDLRARIFYLYEIVQQHSARVLAHRADT-GLLVDINRAVMRGL 114
>gi|254559271|ref|YP_003066366.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
gi|254266549|emb|CAX22313.1| Flagellar protein FlaF [Methylobacterium extorquens DM4]
Length = 116
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
R Y E ++++ R+RE DR++S L A + A A + +W V I
Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+
Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSTPDRSLAALIEVNTSIRDGLQ 116
>gi|163850126|ref|YP_001638169.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
extorquens PA1]
gi|218528730|ref|YP_002419546.1| flagellar biosynthesis regulatory protein FlaF [Methylobacterium
chloromethanicum CM4]
gi|240137260|ref|YP_002961729.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
gi|163661731|gb|ABY29098.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
gi|218521033|gb|ACK81618.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
CM4]
gi|240007226|gb|ACS38452.1| Flagellar protein FlaF [Methylobacterium extorquens AM1]
Length = 116
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEA-LFYTSRVWVVFIQ 60
R Y E ++++ R+RE DR++S L A + A A + +W V I
Sbjct: 3 RLSYAEIMEDAPDLGRERERDAFDRALSQLRTAEAQGAAAGPARSAAVGSIQDLWNVLIA 62
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DL+ +N LP+ ++ +L++IGLW ++E + S +I+V + +RDGL+
Sbjct: 63 DLLDPENALPESLRADLVAIGLWNMREAGEVLSAPDRSLAALIEVNTSIRDGLQ 116
>gi|163742536|ref|ZP_02149922.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
gi|161384121|gb|EDQ08504.1| flagellar protein FlaF, putative [Phaeobacter gallaeciensis 2.10]
Length = 88
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 33 IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIR 92
A K P + AL ++W +F ++ S N LP E+K L+S+G + + ++
Sbjct: 4 AAQKGKPGFTELAAALTDNRKLWSIFSVEVASPGNPLPDELKAQLLSLGEFTHQHTSKVL 63
Query: 93 RNKSNSYQDIIDVISIVRDGLK 114
K+ + ++++ + + GL+
Sbjct: 64 ARKA-DVRLLVEINTAIMRGLR 84
>gi|159045900|ref|YP_001534694.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
shibae DFL 12]
gi|157913660|gb|ABV95093.1| flagellar biosynthesis regulatory protein FlaF [Dinoroseobacter
shibae DFL 12]
Length = 123
Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
++ + E+ + + S L + KS + +A+ R+W+ D+ + N+LP
Sbjct: 17 ATRTEQSIEYELFAKMTSALVQSSKSG-KFEAIAKAVHDNRRLWLALAADVSDDANNLPV 75
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
E++ + + + ++ K ++++ + GL
Sbjct: 76 ELRAQVFYLAEFTQHHSSKVLTEKV-PVDPLVEINRSIMSGL 116
>gi|304321142|ref|YP_003854785.1| flagellar protein FlaF [Parvularcula bermudensis HTCC2503]
gi|303300044|gb|ADM09643.1| flagellar protein FlaF, putative [Parvularcula bermudensis
HTCC2503]
Length = 127
Score = 99.9 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAH-KSLPNSKQAVEALFYTSRVWVVFIQD 61
Y + ++S+ R+ E +L + + ++ A + ++ V A+ +W I D
Sbjct: 7 HGYAQV-RKSTASGREVEIQLLTKIAAEMANADPSTPEGFRELVTAVHRNMEMWTALIVD 65
Query: 62 LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
L+ E+N + Q +K+ L+ +G + L ++ ++ + +I + + GLK
Sbjct: 66 LLQEENKIDQTLKVGLLKLGQFSLVHSRKVVCRQAEP-EVLISINRQIAAGLK 117
>gi|86139474|ref|ZP_01058043.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
gi|85823977|gb|EAQ44183.1| flagellar protein FlaF, putative [Roseobacter sp. MED193]
Length = 128
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 18 KREHWILDRSISLLSIAHKSLPNSKQ------AVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+E+ I+ RS L AHK +K EAL ++W +F DL S DN LPQ
Sbjct: 23 DKEYDIVARSTQNLLAAHKVASANKGTEGFKVLTEALHKNRKMWNIFTADLASSDNQLPQ 82
Query: 72 EVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+VK NL + + + ++ K+ + + +I++ V GL+
Sbjct: 83 DVKDNLFYLAEFTRQHTSKVLSRKA-NVRALIEINMAVLRGLR 124
>gi|83594188|ref|YP_427940.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
gi|83577102|gb|ABC23653.1| putative flagellar protein FlaF [Rhodospirillum rubrum ATCC 11170]
Length = 104
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 22 WILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIG 81
++ +L A + +AL + +W + D+ N LP E+K N++S+
Sbjct: 1 MAFTKAAVMLEEARTKPNDKTAFSQALRFNHLLWTIIQADITEPANTLPPELKANIMSLS 60
Query: 82 LWVLKECER-IRRNKSNSYQDIIDVISIVRDGLK 114
L+V ++ +R + + +I + + GL+
Sbjct: 61 LFVDRQTTASLRSGEVGELEILISINRNLAAGLR 94
>gi|163851039|ref|YP_001639082.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
gi|218529868|ref|YP_002420684.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
CM4]
gi|240138172|ref|YP_002962644.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
gi|254560732|ref|YP_003067827.1| flagellar protein FlaF [Methylobacterium extorquens DM4]
gi|163662644|gb|ABY30011.1| flagellar FlaF family protein [Methylobacterium extorquens PA1]
gi|218522171|gb|ACK82756.1| flagellar FlaF family protein [Methylobacterium chloromethanicum
CM4]
gi|240008141|gb|ACS39367.1| putative flagellar protein FlaF [Methylobacterium extorquens AM1]
gi|254268010|emb|CAX23878.1| putative flagellar protein FlaF [Methylobacterium extorquens DM4]
Length = 124
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + ++ R+ E +L ++ L + +AL + RVW +
Sbjct: 7 AYAK-ASRVALSPREAEAAVLLKAAGRLQSLGSQVEAGPALNDALTFNQRVWTILASAAT 65
Query: 64 SEDNHLPQEVKLNLISIGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGLK 114
+ LP EV+ ++ + +V + + + + ++ + + + GL+
Sbjct: 66 EPSSPLPVEVRTSMAQLSAYVFHTILDTMIEPTAQKIESLVSLNNHIAAGLQ 117
>gi|260432288|ref|ZP_05786259.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416116|gb|EEX09375.1| flagellar biosynthesis regulatory protein FlaF [Silicibacter
lacuscaerulensis ITI-1157]
Length = 124
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQDL 62
Y ++ + R E+ + + L A + V+AL R+W V +
Sbjct: 10 AYAQSAAPT-RTPRDTEYEAISKITHRLKAAAARKASDYSGFVQALHDNRRLWSVLANGV 68
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
DN LP +++ + + + + ++ K+ + ++++ V GL+
Sbjct: 69 ADSDNALPNDLRARIFYLSEFTEQHTGQVLAKKA-DVEPLLEINLAVLRGLR 119
>gi|209967004|ref|YP_002299919.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
gi|209960470|gb|ACJ01107.1| flagellar protein FlaF, putative [Rhodospirillum centenum SW]
Length = 138
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y + + + E L A S + + AL ++W+ + DL
Sbjct: 5 SYQQRAA-TQETAQSLELRAFGFVTQGLRQASTSP-DPTARIRALHRNHQLWLTLVSDLA 62
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
+ +N LP+E+K LIS+G+W ++ R +IDV + + G
Sbjct: 63 TPENPLPEELKGRLISLGMWSMRYSLRAMEEDI-PVDPLIDVNTEIAGG 110
>gi|89056693|ref|YP_512144.1| flagellar biosynthesis regulatory protein FlaF [Jannaschia sp.
CCS1]
gi|88866242|gb|ABD57119.1| flagellar protein FlaF putative [Jannaschia sp. CCS1]
Length = 124
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 13 SIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQE 72
R E+ + L+ + ++ + AL ++W + DL DN LPQ
Sbjct: 18 VRTERGTEYAAFQSVTARLNKSRRADAPMSERAAALHDNRKLWTILASDLADSDNGLPQS 77
Query: 73 VKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
++ L + + L + + ++++ +++V + V GL
Sbjct: 78 LRAQLFYLAEFSLLQSRKALS-EADALTALVEVNTAVMRGL 117
>gi|167043519|gb|ABZ08215.1| putative flagellar protein FlaF [uncultured marine microorganism
HF4000_APKG2J17]
Length = 125
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
Y T + ++ R E ++ LL+ A + AL + + + DL
Sbjct: 7 DAYRRT-SKLALPPRAAEAEAFIKAARLLNQASAGPFDYDAYASALRFNQTLRTIIQADL 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
+ +HLP ++ +++++ L+V K+ + K+ +++++ + GL
Sbjct: 66 GRDGSHLPAGLRSDILNLSLYVDKQTLKALSDPKAEYLGELMEIDRAIARGL 117
>gi|260574410|ref|ZP_05842414.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
gi|259023306|gb|EEW26598.1| flagellar FlaF family protein [Rhodobacter sp. SW2]
Length = 126
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIA-HKSLPNSKQAVEALFYTSRVWVVFIQ 60
R Y + + R E+ +L R+ L + + + AL R+W
Sbjct: 9 RSAYAR-PEAPARTLRGIEYDLLARTTHQLKESWTRRKEDFSGFATALNDNLRLWSALAA 67
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
D+ +N LP ++ L + + + + R++++ S + ++D+ + V GL+
Sbjct: 68 DVAEPENGLPAPLRAQLFYLYEFTAEHSRKARQDQA-SVEVLVDINTAVMRGLR 120
>gi|146341919|ref|YP_001206967.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
ORS278]
gi|146194725|emb|CAL78750.1| conserved hypothetical protein; putative FlaF protein
[Bradyrhizobium sp. ORS278]
Length = 96
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 24 LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
+ ++ L + + +AL + R+W +F+ + +EDN P +++ N+ +IG+
Sbjct: 1 MLKAARQLQEVQANWNGPDRNMYKALLFNRRLWTIFMSAMEAEDNPNPLDIRQNIANIGV 60
Query: 83 WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+V+K+ + + +ID+ + GL
Sbjct: 61 FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92
>gi|148256807|ref|YP_001241392.1| flagellar biosynthesis regulatory protein FlaF [Bradyrhizobium sp.
BTAi1]
gi|146408980|gb|ABQ37486.1| hypothetical protein BBta_5526 [Bradyrhizobium sp. BTAi1]
Length = 96
Score = 95.3 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 24 LDRSISLLSIAHKSLPNS-KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
+ ++ L + + +AL + R+W +F+ + DN E++ N+ +IG+
Sbjct: 1 MLKAARQLQDVQANWNGPDRNMYKALLFNRRLWTIFMSAVEMNDNPNSIEIRQNIANIGV 60
Query: 83 WVLKECERI-RRNKSNSYQDIIDVISIVRDGL 113
+V+K+ + + +ID+ + GL
Sbjct: 61 FVMKQTIEMQMDPDPAKLKSLIDINCHIAAGL 92
>gi|310816822|ref|YP_003964786.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
vulgare Y25]
gi|308755557|gb|ADO43486.1| flagellar biosynthesis regulatory protein FlaF [Ketogulonicigenium
vulgare Y25]
Length = 123
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVK 74
+ R E I R + L A N V+AL R+W D+ S N LP +++
Sbjct: 20 DTRSTEQAIFSRITAALIAAE--GANFPTKVKALHDNRRLWTWLAADVASAQNQLPADLR 77
Query: 75 LNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L + + L ++ R + +ID+ + GL
Sbjct: 78 ARLFYLAEFTLDHSSKVLR-EGADLAPLIDINRAMLLGL 115
>gi|163758035|ref|ZP_02165123.1| putative flagellin synthesis regulator protein [Hoeflea
phototrophica DFL-43]
gi|162284324|gb|EDQ34607.1| putative flagellin synthesis regulator protein [Hoeflea
phototrophica DFL-43]
Length = 115
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/115 (46%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
M Q Y + ++ E R+RE ++ SISLL+ A S++A+EA+++ SR+WV F+
Sbjct: 1 MYQFSYADVQEDGVAEAREREREAINHSISLLTAAKAKGVESREAIEAVYFVSRLWVRFV 60
Query: 60 QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
+DL S +N L +E++ NLISIG+W++KE ERIR+ +SN++Q IID+ I+RDGLK
Sbjct: 61 EDLASPENQLEEELRANLISIGIWIIKESERIRKRESNNFQGIIDISIIIRDGLK 115
>gi|89068720|ref|ZP_01156106.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
gi|89045683|gb|EAR51745.1| hypothetical protein OG2516_06766 [Oceanicola granulosus HTCC2516]
Length = 132
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSK-----------QAVEALFYTS 52
Y TI+ES R+ E +L + + L A ++ + +AL
Sbjct: 5 AYKRTIRES-ETPRQIERRVLAQLTARLEDAAQAYDTAATAPERIAILAGGLRDALAENV 63
Query: 53 RVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
VW+ F DL S N LP +++ LIS+ LW+ K+ RI + V V DG
Sbjct: 64 TVWLHFRYDLSSPANELPPALRVQLISLSLWIEKQTNRILGG-GQGLVQLAAVNRSVVDG 122
Query: 113 L 113
L
Sbjct: 123 L 123
>gi|328543142|ref|YP_004303251.1| flagellar protein FlaF [polymorphum gilvum SL003B-26A1]
gi|326412888|gb|ADZ69951.1| Flagellar protein FlaF [Polymorphum gilvum SL003B-26A1]
Length = 97
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 26 RSISLLSIAHKSLPN--SKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
++ + L + + +AL Y ++W V + ++HLPQ++K NL S+G++
Sbjct: 2 KAAARLQLIKDEWDGSSFAEKDDALAYNRKLWTVLVTSATGAESHLPQDLKNNLASLGVF 61
Query: 84 VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
V K + +I + + +GL+
Sbjct: 62 VFKHTINVLIDPAPEKLDTLIFINRSIAEGLR 93
>gi|46200761|ref|ZP_00056442.2| hypothetical protein Magn03011143 [Magnetospirillum magnetotacticum
MS-1]
Length = 161
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE-DNHLPQEV 73
R+ E W L + ++ A + P +AL ++W +F DL+ + + E
Sbjct: 18 NPRETEAWALTEAARRMASASRGEPEG--MRDALRLNWKLWTIFQADLIGKVEAGETTET 75
Query: 74 KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
+N++S+ +V + + ++++ + GL+
Sbjct: 76 VVNMLSLCQFVDFHTVAALTEPDAPKLEVLVNINRNIASGLR 117
>gi|288962053|ref|YP_003452363.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
gi|288914333|dbj|BAI75819.1| hypothetical protein AZL_c05260 [Azospirillum sp. B510]
Length = 181
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 12 SSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQ 71
+S R E W L + IA + K EAL R+W +F + ED P
Sbjct: 20 TSDNPRDVEAWALAEAARR-IIAASHAKDEKAFREALQLNQRLWTIFQAAITEEDCGHPP 78
Query: 72 EVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIVRDGL 113
EV+ N+ ++ L V +E R+ ++++ V GL
Sbjct: 79 EVRTNIAALSLLVDRETTNRLVDLDFGKIDTLVNINRNVASGL 121
>gi|83309790|ref|YP_420054.1| hypothetical protein amb0691 [Magnetospirillum magneticum AMB-1]
gi|82944631|dbj|BAE49495.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 165
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 15 ECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL-VSEDNHLPQEV 73
R+ E W L + ++ A + P E+L ++W +F DL + E
Sbjct: 22 NPRETEAWALTEAARRMASASRGEPEG--MRESLRLNWKLWTIFQADLIGKAEAGEATET 79
Query: 74 KLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
+N++S+ +V + + ++++ + GL+
Sbjct: 80 VVNMLSLCQFVDFHTVAALTEPDAAKLEVLVNINRNIASGLR 121
>gi|307945681|ref|ZP_07661017.1| protein FlaF [Roseibium sp. TrichSKD4]
gi|307771554|gb|EFO30779.1| protein FlaF [Roseibium sp. TrichSKD4]
Length = 97
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 26 RSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
++ + L + + Q +AL Y ++W + + + +N LPQE+K N+ S+G++
Sbjct: 2 KAAARLQLVKDEWQQTSLAQRDDALTYNRKLWTILVTSATNGENPLPQEIKNNIASLGVF 61
Query: 84 VLKECERIR-RNKSNSYQDIIDVISIVRDGLK 114
V K+ + N +I + + +GL+
Sbjct: 62 VFKQTMEAMTDEEGNKLNSLISINRAIAEGLR 93
>gi|118588728|ref|ZP_01546136.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
gi|118438714|gb|EAV45347.1| putative flagellar protein FlaF [Stappia aggregata IAM 12614]
Length = 94
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 26 RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
++ + L + NS + +AL Y ++W + + S ++ LPQ++K N+ ++G++
Sbjct: 2 KAAARLQLIKDEWANSSLAEKDDALVYNRKLWTILVTSATSAESELPQDIKNNIATLGVF 61
Query: 84 VLKECERIRRNKSNS-YQDIIDVISIVRDGLK 114
V K+ + + +I + + +GL+
Sbjct: 62 VFKQTMTVMTTDDENKLDTLISINRSIAEGLR 93
>gi|144897636|emb|CAM74500.1| Flagellar FlaF [Magnetospirillum gryphiswaldense MSR-1]
Length = 122
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 4 YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLV 63
Y Q S + R+ + ++ +LL +S ++ AL R+W + L
Sbjct: 12 AYGR-AQGSVLPLRQADALAFTQAANLLEDCLRSADRTQ-REAALKRNQRLWTQVQRLLS 69
Query: 64 SEDNHLPQEVKLNLISIGLWVLKECERIR-RNKSNSYQDIIDVISIVRDGL 113
D+ LP +V+ NL+ + ++ ++ + ++ + ++ + V GL
Sbjct: 70 RSDHPLPADVRANLLDLSHFIDRQTVKALISGAADDLRPLVKINREVAAGL 120
>gi|254488350|ref|ZP_05101555.1| flagellar protein, putative [Roseobacter sp. GAI101]
gi|214045219|gb|EEB85857.1| flagellar protein, putative [Roseobacter sp. GAI101]
Length = 88
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECER 90
+ A + +EAL ++W ++ DN LP+E++ L + +
Sbjct: 1 MKKAIEKKDLGP-LLEALHENRKLWRTLALNVSQSDNGLPEELRARLYYLSEFTNHHTSE 59
Query: 91 IRRNKSNSYQDIIDVISIVRDGLK 114
+ RNK ++ +++V + + GLK
Sbjct: 60 VIRNKISAI-PLVEVNTAILRGLK 82
>gi|126730143|ref|ZP_01745955.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
gi|126709523|gb|EBA08577.1| flagellar protein FlaF, putative [Sagittula stellata E-37]
Length = 81
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 40 NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSY 99
+ VEAL R+W D+ E N LPQ+++ + + +V ++ ++ K
Sbjct: 2 AYPKLVEALSDNQRLWTTLAIDVADEGNALPQDLRARIFYLAEFVQQQTSKVLTRKGR-I 60
Query: 100 QDIIDVISIVRDGL 113
++++ + + GL
Sbjct: 61 TPLLEINAAILKGL 74
>gi|126734098|ref|ZP_01749845.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
gi|126716964|gb|EBA13828.1| flagellar protein FlaF, putative [Roseobacter sp. CCS2]
Length = 74
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 45 VEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIID 104
+ A+ R+W D+ + N LP+E++ + + + +++ R K++ +ID
Sbjct: 1 MAAIHDNRRMWTTMAVDVADKGNALPKELRAQIFYLAEFTDHHSQQVIRGKADP-AALID 59
Query: 105 VISIVRDGL 113
+ V GL
Sbjct: 60 INMAVLKGL 68
>gi|46200759|ref|ZP_00056440.2| hypothetical protein Magn03011141 [Magnetospirillum magnetotacticum
MS-1]
Length = 124
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
++E L + L A S + + V AL + VWV S + LP ++K NL
Sbjct: 15 EQEALSLAEAAIALDRARSSKDRAAELVAALNHNLEVWVAIRSLARSPGSPLPPDLKANL 74
Query: 78 ISIGLWVLKECERIRRNKSN-SYQDIIDVISIVRDGL 113
I + +V + S +I++ + +GL
Sbjct: 75 IRLSEFVAHTTFTNGATIGDSSLNTLININMQLAEGL 111
>gi|58039254|ref|YP_191218.1| flagellin assembly protein [Gluconobacter oxydans 621H]
gi|58001668|gb|AAW60562.1| Flagellin assembly protein [Gluconobacter oxydans 621H]
Length = 140
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 5 YHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS 64
Y + S + R+ E +LL+ A + V AL ++W + +
Sbjct: 8 YQK-QSGSYLSSREVEVMAFRHVNALLTQASDH----EAKVAALAANLKLWSLLSLSVER 62
Query: 65 EDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
D LP ++ +LI +G W ++ Q +ID+ + + +GL
Sbjct: 63 VDCPLPPVLRDDLIKVGSWAMRYSNSAFNAP-KDLQPLIDINNDMIEGL 110
>gi|254469993|ref|ZP_05083397.1| flagellar FlaF [Pseudovibrio sp. JE062]
gi|211960304|gb|EEA95500.1| flagellar FlaF [Pseudovibrio sp. JE062]
Length = 99
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 26 RSISLLSIAHKSLPNS--KQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLW 83
++ + LS+ + ++ E L + +W +F+ + + + LP E++ N+ ++ L+
Sbjct: 2 KAAARLSVLQREWDTVSREERNETLIFNRTLWTIFVTEATASHSELPLELQNNIANLALF 61
Query: 84 VLKECERIRRN-KSNSYQDIIDVISIVRDGLK 114
+ + + + + +I++ + GL+
Sbjct: 62 MFNRTIEMMGGEEPEALETMININKSLAAGLR 93
>gi|83309788|ref|YP_420052.1| hypothetical protein amb0689 [Magnetospirillum magneticum AMB-1]
gi|82944629|dbj|BAE49493.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 124
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
++E L + L A + + V AL + VWV S + LP ++K NL
Sbjct: 15 EQEALSLAEAAIALDRARSGENRAAELVAALNHNLEVWVAIRSLARSPGSALPPDLKANL 74
Query: 78 ISIGLWVLKECERIRRNKSNS-YQDIIDVISIVRDGL 113
I + +V + +S +I++ + +GL
Sbjct: 75 IRLSEFVAHTTFTNGASIGDSALNTLININMQLAEGL 111
>gi|83594178|ref|YP_427930.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
gi|83577092|gb|ABC23643.1| hypothetical protein Rru_A2846 [Rhodospirillum rubrum ATCC 11170]
Length = 118
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
+ + L + LS A + + AL ++WV + DN LPQ+VK NLI
Sbjct: 17 DAFALTEAAVALSRALAT-ADKPALAAALEGNFQLWVGIRTLVSRSDNPLPQDVKDNLIR 75
Query: 80 IGLWVLKECERIRRN-KSNSYQDIIDVISIVRDGL 113
+ + ++ + ++ + +I+ + +GL
Sbjct: 76 LSQYTAQKTFELHDGVDEDTVESLINTNLQIAEGL 110
>gi|162147450|ref|YP_001601911.1| hypothetical protein GDI_1666 [Gluconacetobacter diazotrophicus PAl
5]
gi|161786027|emb|CAP55609.1| hypothetical protein GDI1666 [Gluconacetobacter diazotrophicus PAl
5]
Length = 132
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
+ Y ++I SS+ R+ + I L A S + AL + R+W + +
Sbjct: 8 KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 65
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
V + PQE + +++ R + + +I + VRDGL
Sbjct: 66 VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 116
>gi|209545559|ref|YP_002277788.1| hypothetical protein Gdia_3448 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533236|gb|ACI53173.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 131
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
+ Y ++I SS+ R+ + I L A S + AL + R+W + +
Sbjct: 7 KAY-QSIAGSSLTGREADAACFRMLIDELKAAEAS-SDHTVRRHALARSQRLWAMIMNAN 64
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
V + PQE + +++ R + + +I + VRDGL
Sbjct: 65 VQDSGLTPQEDRQLFVTLAHRSQLYGIRAMLDPALPLTPLIRIAENVRDGL 115
>gi|296533830|ref|ZP_06896366.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
gi|296265848|gb|EFH11937.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 123
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 16 CRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
R+ E + + L A ++ ++ EAL R+W + L + +N LP ++
Sbjct: 28 PREEEAAAFRSAATTLLAAREAGHEARG--EALRLNRRLWQAVLIALAAPENALPMPLRQ 85
Query: 76 NLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
L ++ +L+E +R R + + + GL
Sbjct: 86 GLATLATTMLREMDRNRP----DLAFLAAINQEIAAGL 119
>gi|239787500|emb|CAX83970.1| conserved uncharacterized protein [uncultured bacterium]
Length = 126
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
+ + L ++ LL A + + + V AL ++WV D +LP E K NL
Sbjct: 19 EAKASALVKAALLLDQAKMNRADKQAMVVALDNNLQLWVAIRTIARQPDYNLPDEAKENL 78
Query: 78 ISIGLWVLKECER-IRRNKSNSYQDIIDVISIVRDG 112
+ +V + + ++++ + +G
Sbjct: 79 AQLSHFVSDLTFKHGLTITDAALDALVNINLRLAEG 114
>gi|46200769|ref|ZP_00056465.2| hypothetical protein Magn03011167 [Magnetospirillum magnetotacticum
MS-1]
Length = 114
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
E + +++ ++ AL + ++WV + ++ LP VK NL
Sbjct: 14 EQDAFGLVEAAITLDQSRGDKAR-LAAALDHNLQLWVAIRTLVTDTNSGLPDAVKTNLTR 72
Query: 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
+ +V ++ N+ +++V + +GL
Sbjct: 73 LSDFVADTTLKKGVDISDNTITTLVNVNLQISEGL 107
>gi|218507949|ref|ZP_03505827.1| flagellar biosynthesis regulatory protein FlaF [Rhizobium etli
Brasil 5]
Length = 98
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MRQ-YYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
M Q Y E +Q+S + ++RE +LDRSI LL++A ++A+E LFYT RVW+ FI
Sbjct: 1 MYQFSYAEVMQDSVADAKEREWQVLDRSIELLALARDKDTYGREAIEVLFYTRRVWISFI 60
>gi|83312910|ref|YP_423174.1| hypothetical protein amb3811 [Magnetospirillum magneticum AMB-1]
gi|82947751|dbj|BAE52615.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 114
Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 20 EHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
E + +++ ++ AL ++WV + + LP VK NL
Sbjct: 14 EQDAFGLVEAAITLDQSRGDKAR-LAAALEQNLQLWVAIRTLVSDATSGLPDAVKTNLTR 72
Query: 80 IGLWVLKEC-ERIRRNKSNSYQDIIDVISIVRDGL 113
+ +V ++ N+ +++V + +GL
Sbjct: 73 LSDFVADTTLKKGVEISDNTITTLVNVNLQISEGL 107
>gi|288962913|ref|YP_003453207.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
gi|288915179|dbj|BAI76663.1| hypothetical protein AZL_e03180 [Azospirillum sp. B510]
Length = 193
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
+ + +TI ++ +++ +L ++ L + ++ AL ++W+ L
Sbjct: 41 ESWADTILRTNFASVEQDSIVLLQAAGSLLDSES----PEKVNVALDQNLKLWIAIKTVL 96
Query: 63 VSEDNHLPQEVKLNLISIGLWVLKECERIRRN--KSNSYQDIIDVISIVRDGL 113
+++D + EVK NL ++ +V+ + +++ + + + +GL
Sbjct: 97 LNDDCPVEPEVKANLRNLAQYVVSTTMLATQGAIETSKLVSLARLNMNIAEGL 149
>gi|296535171|ref|ZP_06897393.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC
49957]
gi|296264499|gb|EFH10902.1| hypothetical protein HMPREF0731_2875 [Roseomonas cervicalis ATCC
49957]
Length = 134
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 11 ESSIECRKREHWILDRSISLLSIAHKSL--PNSKQAVEALFYTSRVWVVFIQDLVSEDNH 68
+++ R++E + L +A + + +AL R++ ++ E
Sbjct: 18 KAARSLREQEAEVYALVSGRLRVAIEGSEIDRVRARADAL----RLFSTVRILVLHESCE 73
Query: 69 LPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
LP ++ ++S+ ++E E+ + + D+ GL
Sbjct: 74 LPAPLRGQIVSLCRVAMREVEK---EDAADLGFLADLCDSFAGGL 115
>gi|144901296|emb|CAM78160.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 110
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 18 KREHWIL--DRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
E R+ +L A + + EAL VWV + S+ +V
Sbjct: 9 AIEEQAFQLSRAAIMLDQAKA---DRSKLEEALELNMAVWVALRTLITSDGCSASSQVVE 65
Query: 76 NLISIGLWV-LKECERIRRNKSNSYQDIIDVISIVRDGL 113
NLI + +V K S +I+V + +GL
Sbjct: 66 NLIRLANFVAEKTIAGAAAATDASIDALINVNLQISEGL 104
>gi|89069827|ref|ZP_01157162.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
gi|89044628|gb|EAR50744.1| flagellar protein FlaF, putative [Oceanicola granulosus HTCC2516]
Length = 62
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
++ +N L ++++ L + +V + + + + +I+V + V GL
Sbjct: 1 MAAEVADRNNALSEDLRARLFYLSEFVGYQTRKALKGQG-GVASLIEVNTAVMRGL 55
>gi|23005490|ref|ZP_00048277.1| hypothetical protein Magn03001225 [Magnetospirillum
magnetotacticum MS-1]
Length = 64
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 2 RQYYHETIQESSIECRKREHWILDRSISLLSIAHKSL-PNSKQAVEALFYTSRVWVVFIQ 60
R Y E ++++ R RE DR++ LL A + A+ Y +W + I
Sbjct: 3 RMSYSEIMEDAPDLGRAREREAFDRALGLLQSAEARGVTAGHERTAAISYIQDLWNLLIA 62
>gi|74316799|ref|YP_314539.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC
25259]
gi|74056294|gb|AAZ96734.1| hypothetical protein Tbd_0781 [Thiobacillus denitrificans ATCC
25259]
Length = 128
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 19 REHWILDRSISLLSIAHKSL---PNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKL 75
E LD + L + +Q AL + W L LP EV+
Sbjct: 23 AEVAQLDGIAAQLMRVQRHWHDDDRERQLAAALAASRSTWHAIQAALAEATLPLPLEVRQ 82
Query: 76 NLISIGLWVLKECERI-RRNKSNSYQDIIDVISIVRDGLK 114
NL+ + ++ + +++ +I + + LK
Sbjct: 83 NLLILSVYAESKIGACEAAPDADTLGSLIALTRTLAGSLK 122
>gi|7799886|emb|CAB91080.1| Env protein [Human immunodeficiency virus 1]
Length = 847
Score = 41.3 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K IS+ + V
Sbjct: 766 LLIAARSVDLLGRRGWEALKY---LWNLLQY--------WSQELKNRAISLLDATAIAVA 814
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI +++ I+++ +R GL
Sbjct: 815 EGTDRIIEIIQRTFRAILNIPRRIRQGL 842
>gi|91176537|gb|ABE26658.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 861
Score = 40.2 bits (93), Expect = 0.093, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
+L L+ + + EAL Y +W + QE+K + +S+
Sbjct: 777 RDLLLIVTRLVELLGRRG------WEALKY---LWNLLQY--------WSQELKNSAVSL 819
Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+ V + +R+ +++ I+++ +R GL
Sbjct: 820 LDAIAIAVAEGTDRVLEGLQRAFRAILNIPRRIRQGL 856
>gi|225348169|gb|ACN87123.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A P ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVEPLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|83312762|ref|YP_423026.1| hypothetical protein amb3663 [Magnetospirillum magneticum AMB-1]
gi|82947603|dbj|BAE52467.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 173
Score = 38.6 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 27 SISLLSIAH--KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWV 84
+L+ A ++ ++ +AL RVW+V + N + +V
Sbjct: 17 IAALMEAADGIEAANDTAAFKDALNANFRVWLVVRE--CGVGNGWAVPTSRD----AEFV 70
Query: 85 LKECERIRRN-KSNSYQDIIDVISIVRDGL 113
+ R + II + V GL
Sbjct: 71 IHGSSGQGRGVNDDDIGAIIPINRRVAHGL 100
>gi|225348165|gb|ACN87121.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 38.2 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A + EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRGGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|256252473|dbj|BAH97593.1| Env [Human immunodeficiency virus 1]
gi|256252483|dbj|BAH97602.1| Env [Human immunodeficiency virus 1]
Length = 858
Score = 38.2 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
L A + EAL Y +W + QE+K + IS+ + V +
Sbjct: 778 LIAARTVNRGLRGGWEALKY---LWNLTQY--------WSQELKNSAISLLNTIAIVVAE 826
Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113
+R+ I+++ +R GL
Sbjct: 827 GTDRVIEALQGVLTAILNIPRRIRQGL 853
>gi|32189807|gb|AAP75718.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 843
Score = 38.2 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A + EAL Y +W + QE+K + IS+ + V
Sbjct: 762 LLIAARVVELLGRGGWEALKY---LWSLLQY--------WSQELKNSAISLLNTTAIVVA 810
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ + I+++ +R GL
Sbjct: 811 EGTDRVLEALQRVGRAILNIPRRIRQGL 838
>gi|222428594|gb|ACM50205.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 850
Score = 38.2 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y W + + QE+K + IS+ + V
Sbjct: 769 LLIAARGLEHLGRRGWEALKY---CWNLLLY--------WSQELKSSAISLLNTTAIVVA 817
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI +++ I + +R GL
Sbjct: 818 EGTDRILEGLQTAFRAFIHIPRRIRQGL 845
>gi|295239063|gb|ADF84323.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 864
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y W + QE+K + +S+ + V
Sbjct: 783 LLIAARIVGLLGRRGWEALKY---WWNLLQY--------WSQELKNSAVSLXXXXAIAVA 831
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ +Y+ I ++ +R GL
Sbjct: 832 EGTDRVIEGLQRAYRGICNIPRRIRQGL 859
>gi|225348175|gb|ACN87126.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|326370908|gb|ADZ56656.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 850
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ E L Y +W + QE+K + +S+ + V
Sbjct: 769 LLIAARLVELLGRRGWEXLKY---LWNLLQY--------WSQELKNSAVSLLNTTAVAVA 817
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ +++ +I + +R GL
Sbjct: 818 EGTDRVIEAVQRAFRALIHIPRRIRQGL 845
>gi|225348177|gb|ACN87127.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348185|gb|ACN87131.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348171|gb|ACN87124.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 843
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838
>gi|225348181|gb|ACN87129.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348211|gb|ACN87144.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348167|gb|ACN87122.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348205|gb|ACN87141.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348209|gb|ACN87143.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|330829383|ref|YP_004392335.1| ABC transporter periplasmic binding protein [Aeromonas veronii
B565]
gi|328804519|gb|AEB49718.1| ABC transporter, periplasmic binding protein [Aeromonas veronii
B565]
Length = 339
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 18 KREHWILDRSISLLSIAHKSLP-NSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN 76
E + + L A + L + + AL Y VV I D+ P ++K
Sbjct: 249 DMEAAAIIKGTPKLEAAKQLLDFAATEQANAL-YNKSFAVVAIPDVAQPRAGYPADIKGQ 307
Query: 77 LI-SIGLWVLKECERIRRNKSNSYQD 101
+I + W +E I S S+
Sbjct: 308 MIDNDFSWAARERNAILAQWSASFDG 333
>gi|225348199|gb|ACN87138.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348193|gb|ACN87135.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|225348195|gb|ACN87136.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.9 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348207|gb|ACN87142.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348203|gb|ACN87140.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348197|gb|ACN87137.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348189|gb|ACN87133.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|225348191|gb|ACN87134.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348183|gb|ACN87130.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348179|gb|ACN87128.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 843
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 762 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 810
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 811 EGTDRIIELVQRGFRAIIHIPRRIRQGL 838
>gi|225348173|gb|ACN87125.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|225348201|gb|ACN87139.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + + QE++ + +++ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQYWI--------QELRNSAVNLLNTTAIAVA 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ II + +R GL
Sbjct: 816 EGTDRIIELVQRGFRAIIHIPRRIRQGL 843
>gi|317408014|gb|ADV17540.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|317408030|gb|ADV17548.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 847
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIAVG 814
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842
>gi|317408010|gb|ADV17538.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ + + I+++ +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844
>gi|317407992|gb|ADV17529.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ + + I+++ +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844
>gi|317407986|gb|ADV17526.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ + + I+++ +R GL
Sbjct: 817 EGTDRVIEALQRAGRAILNIPRRIRQGL 844
>gi|317408024|gb|ADV17545.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 37.5 bits (86), Expect = 0.71, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 821 EGTDRIIEALQRTGRAILNIPRRIRQGL 848
>gi|317408028|gb|ADV17547.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317408022|gb|ADV17544.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317408020|gb|ADV17543.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848
>gi|317408018|gb|ADV17542.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 847
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 766 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 814
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 815 EGTDRIIEALQRAGRAILNIPRRIRQGL 842
>gi|317408012|gb|ADV17539.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 772 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 820
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 821 EGTDRIIEALQRAGRAILNIPRRIRQGL 848
>gi|317408006|gb|ADV17536.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317408000|gb|ADV17533.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317407998|gb|ADV17532.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317407996|gb|ADV17531.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 848
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 767 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 815
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 816 EGTDRIIEALQRAGRAILNIPRRIRQGL 843
>gi|317407994|gb|ADV17530.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.5 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|317408032|gb|ADV17549.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|222428535|gb|ACM50158.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 874
Score = 37.1 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y W + QE+K + +S+ + V
Sbjct: 793 LLIAARIVELLGRRGWEALKY---WWSLLQY--------WSQELKNSAVSLLNATAIAVA 841
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI +++ II + + +R GL
Sbjct: 842 EGTDRIIEVAQRAFRAIIHIPTRIRQGL 869
>gi|239948270|ref|ZP_04700023.1| tetratricopeptide repeat-containing protein [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922546|gb|EER22570.1| tetratricopeptide repeat-containing protein [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 689
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 3 QYYHETIQ--ESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQ 60
+ Y++ +Q + +K +H + R + +S A L N+K EAL Y + +FI
Sbjct: 515 EAYNQVMQLYDMHKPVKKEDHEVFGRIFTQMSRAQLGLGNAK---EALDYARKARTIFIN 571
Query: 61 DLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
D +N V ++ + + E + +
Sbjct: 572 DPSRPNNSRDIAVSPDI-YLAKACVAEADAL 601
>gi|317407990|gb|ADV17528.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 849
Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE+K + IS+ + V
Sbjct: 768 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELKNSAISLLNTTAIVVG 816
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI + + I+++ +R GL
Sbjct: 817 EGTDRIIEALQRAGRAILNIPRRIRQGL 844
>gi|307728681|ref|YP_003905905.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
gi|307583216|gb|ADN56614.1| glycoside hydrolase 15-related protein [Burkholderia sp. CCGE1003]
Length = 591
Score = 37.1 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 32 SIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI 91
AH + P AL T R W +I PQ V+ +L+++ + + I
Sbjct: 180 KRAHHAAPQPLDVQHALDETQRFWRNWIDSFDDSRTAWPQAVRRSLLTLKALMHRRTGAI 239
Query: 92 RRNKSNSY 99
+ S
Sbjct: 240 VAAPTTSL 247
>gi|109828537|sp|Q9QBY2|ENV_HV196 RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env
polyprotein; Contains: RecName: Full=Surface protein
gp120; Short=SU; AltName: Full=Glycoprotein 120;
Short=gp120; Contains: RecName: Full=Transmembrane
protein gp41; Short=TM; AltName: Full=Glycoprotein 41;
Short=gp41; Flags: Precursor
Length = 842
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
++ +L + EAL Y +W + QE+K + IS+
Sbjct: 758 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 800
Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+ V +RI +++ ++ + +R GL
Sbjct: 801 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 837
>gi|6093159|emb|CAB58990.1| ENV protein [Human immunodeficiency virus 1]
Length = 850
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 21/97 (21%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI 80
++ +L + EAL Y +W + QE+K + IS+
Sbjct: 766 RNLILIVTRILER------GLRGGWEALKY---LWNLVQY--------WSQELKNSAISL 808
Query: 81 ----GLWVLKECERIRRNKSNSYQDIIDVISIVRDGL 113
+ V +RI +++ ++ + +R GL
Sbjct: 809 LNTTAIAVAGGTDRIIEIGQRAFRALLHIPRRIRQGL 845
>gi|282761919|gb|ADA84560.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 864
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
L +A + EAL Y +W + QE+K + IS+ + V +
Sbjct: 784 LIVARIVNRGLRGGWEALKY---LWNIIQY--------WSQELKNSAISLFNATAIAVAE 832
Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113
+RI + + I+++ +R GL
Sbjct: 833 GTDRIIEALQKAGRAILNIPRRIRQGL 859
>gi|269961613|ref|ZP_06175975.1| flagellar protein FliS [Vibrio harveyi 1DA3]
gi|269833654|gb|EEZ87751.1| flagellar protein FliS [Vibrio harveyi 1DA3]
Length = 136
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
Q Y + Q S+ K ++ +I L A N E L + +
Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65
Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
L +D ++ NL S+ +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMDDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115
>gi|156602277|gb|ABU87036.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 863
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
L A ++ EAL Y +W + + + QE+K + IS+ + V +
Sbjct: 783 LIAARTVGLLGRRGWEALKY---LWNLLLYWI--------QELKNSAISLLNTTAIAVAE 831
Query: 87 ECERIRRNKSNSYQDIIDVISIVRDG 112
+R+ + + ++++ +R G
Sbjct: 832 ATDRVMDIVQRTIRAVLNIPRRIRQG 857
>gi|222428545|gb|ACM50166.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 867
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL + ++ EAL Y +W + + QE+K + IS+ + V
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112
+ +RI +++ II + +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861
>gi|116518678|gb|ABJ99563.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 867
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL + ++ EAL Y +W + + QE+K + IS+ + V
Sbjct: 786 LLIVTRTVELLGRRGWEALKY---LWNLLQYWI--------QELKNSAISLLNATAIAVA 834
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDG 112
+ +RI +++ II + +R G
Sbjct: 835 EGTDRILEGLQRAFRAIIHIPRRIRQG 861
>gi|296201235|ref|XP_002806838.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 9, axonemal-like
[Callithrix jacchus]
Length = 4478
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L R+ + L+ A + L K + L + ++ EV I
Sbjct: 3278 RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3337
Query: 79 SIG 81
S+
Sbjct: 3338 SLA 3340
>gi|59710072|gb|AAW88565.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 837
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL +A ++ EAL Y +W + + QE+K + IS+ + V
Sbjct: 756 LLIVARTLELLGRRGWEALKY---LWSLLQYWI--------QELKNSAISLLNATAIAVA 804
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +R+ +Y+ I+++ + +R GL
Sbjct: 805 EGTDRVIEIVQRAYRAILNIPTRIRQGL 832
>gi|73955910|ref|XP_863527.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2
isoform 2 [Canis familiaris]
Length = 4359
Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L R+ S L+ A + L K + L + ++ EV I
Sbjct: 3159 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3218
Query: 79 SIG 81
S+
Sbjct: 3219 SLA 3221
>gi|298199679|gb|ADI59774.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 856
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 15/87 (17%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVLK 86
L A ++ EA+ Y +W + + QE+K +++S+ + V +
Sbjct: 776 LIAARIVELLGRRGWEAIKY---LWNILQYWI--------QELKNSVVSLFNATAIXVAE 824
Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113
+RI +++ I ++ +R GL
Sbjct: 825 GTDRIIEAIQAAFRAIXNIPRRIRQGL 851
>gi|323975220|gb|EGB70324.1| hypothetical protein ERFG_03922 [Escherichia coli TW10509]
Length = 249
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +W+ D P E + LI++ VLK
Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 157 DVLNDDPRDLQLL 169
>gi|73955908|ref|XP_851319.1| PREDICTED: similar to dynein, axonemal, heavy polypeptide 9 isoform 2
isoform 1 [Canis familiaris]
Length = 4489
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L R+ S L+ A + L K + L + ++ EV I
Sbjct: 3289 RQALSRATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 3348
Query: 79 SIG 81
S+
Sbjct: 3349 SLA 3351
>gi|312884917|ref|ZP_07744607.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367394|gb|EFP94956.1| flagellar protein FliS [Vibrio caribbenthicus ATCC BAA-2122]
Length = 136
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + Q S+ K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEAGNIPKKGERLGKALDIVIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + E +N D+I++I +
Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHKNDPQPIDDVIEIIREI 115
>gi|301787127|ref|XP_002928979.1| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Ailuropoda
melanoleuca]
Length = 3310
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 18 KRE--HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEV 73
+ E L R+ S L+ A + L K + L + ++ EV
Sbjct: 2162 EVEPKRQALSRATSDLTAAQEKLAAIKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEV 2221
Query: 74 KLNLISIG 81
IS+
Sbjct: 2222 TAGTISLA 2229
>gi|28899028|ref|NP_798633.1| flagellar protein FliS [Vibrio parahaemolyticus RIMD 2210633]
gi|153834159|ref|ZP_01986826.1| flagellar protein FliS [Vibrio harveyi HY01]
gi|153836938|ref|ZP_01989605.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810]
gi|260365226|ref|ZP_05777783.1| flagellar protein FliS [Vibrio parahaemolyticus K5030]
gi|260878776|ref|ZP_05891131.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034]
gi|260897371|ref|ZP_05905867.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466]
gi|260899930|ref|ZP_05908325.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037]
gi|1254205|gb|AAC27805.1| essential polar flagellar protein [Vibrio parahaemolyticus]
gi|28807247|dbj|BAC60517.1| polar flagellar protein FlaJ [Vibrio parahaemolyticus RIMD 2210633]
gi|148869529|gb|EDL68527.1| flagellar protein FliS [Vibrio harveyi HY01]
gi|149749711|gb|EDM60456.1| flagellar protein FliS [Vibrio parahaemolyticus AQ3810]
gi|308088254|gb|EFO37949.1| flagellar protein FliS [Vibrio parahaemolyticus Peru-466]
gi|308094208|gb|EFO43903.1| flagellar protein FliS [Vibrio parahaemolyticus AN-5034]
gi|308107349|gb|EFO44889.1| flagellar protein FliS [Vibrio parahaemolyticus AQ4037]
gi|308115435|gb|EFO52975.1| flagellar protein FliS [Vibrio parahaemolyticus K5030]
gi|328474435|gb|EGF45240.1| flagellar protein FliS [Vibrio parahaemolyticus 10329]
Length = 136
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
Q Y + Q S+ K ++ +I L A N E L + +
Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65
Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
L ED ++ NL S+ +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115
>gi|323965780|gb|EGB61231.1| hypothetical protein ERJG_02852 [Escherichia coli M863]
gi|327250864|gb|EGE62566.1| hypothetical protein ECSTEC7V_4407 [Escherichia coli STEC_7v]
Length = 249
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +W+ D P E + LI++ VLK
Sbjct: 105 LQRATRGFHSPHALDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 156
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 157 DVLNDDPRDLQLL 169
>gi|163801840|ref|ZP_02195737.1| flagellar protein FliS [Vibrio sp. AND4]
gi|159174348|gb|EDP59152.1| flagellar protein FliS [Vibrio sp. AND4]
Length = 136
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
Q Y + Q S+ K ++ +I L A N E L + +
Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPAKGERLGKALDIIIA 65
Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
L +D ++ NL S+ +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMDDGG---DIASNLDSLYEFMITQISTANHQNDPKPIDDVIDIIREI 115
>gi|332227394|ref|XP_003262879.1| PREDICTED: dynein heavy chain 9, axonemal-like [Nomascus
leucogenys]
Length = 250
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L R+ + L+ A + L K + L + ++ EV I
Sbjct: 94 RQALSRATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTAGTI 153
Query: 79 SIG 81
S+
Sbjct: 154 SLA 156
>gi|119442|sp|P18799|ENV_HV1ND RecName: Full=Envelope glycoprotein gp160; AltName: Full=Env
polyprotein; Contains: RecName: Full=Surface protein
gp120; Short=SU; AltName: Full=Glycoprotein 120;
Short=gp120; Contains: RecName: Full=Transmembrane
protein gp41; Short=TM; AltName: Full=Glycoprotein 41;
Short=gp41; Flags: Precursor
gi|328162|gb|AAA44873.1| env polyprotein [Human immunodeficiency virus 1]
Length = 846
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 31 LSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLN----LISIGLWVLK 86
L A ++ EAL Y +W + QE++ + L +I + V +
Sbjct: 766 LIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSASSLLDTIAIAVAE 814
Query: 87 ECERIRRNKSNSYQDIIDVISIVRDGL 113
+R+ + + I++V +R GL
Sbjct: 815 RTDRVIEVVQRACRAILNVPRRIRQGL 841
>gi|297271948|ref|XP_001118299.2| PREDICTED: dynein heavy chain 9, axonemal-like, partial [Macaca
mulatta]
Length = 2536
Score = 35.6 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L ++ + L+ A + L K + L + ++ EV + I
Sbjct: 1336 RQALSKATADLTAAQEKLAAIKAKIAHLNENLAKLTARFEKATADKLKCQQEAEVTASTI 1395
Query: 79 SIG 81
S+
Sbjct: 1396 SLA 1398
>gi|311268434|ref|XP_003132053.1| PREDICTED: dynein heavy chain 9, axonemal-like [Sus scrofa]
Length = 385
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSE--DNHLPQEVKLNLI 78
L ++ S L+ A + L K + L + ++ EV I
Sbjct: 219 RQALSKATSDLTAAQEKLAAVKAKIAHLNENLAKLTAKFEKATADKLKCQQEAEVTAGTI 278
Query: 79 SIG 81
S+
Sbjct: 279 SLA 281
>gi|312948279|gb|ADR29106.1| putative phosphopantetheinyl transferase [Escherichia coli O83:H1
str. NRG 857C]
Length = 249
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +W+ D P E + LI++ VLK +
Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 156
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 157 DVLNDDPRDLQLL 169
>gi|258623959|ref|ZP_05718912.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603]
gi|258583753|gb|EEW08549.1| hypothetical protein VMB_02130 [Vibrio mimicus VM603]
Length = 442
Score = 35.2 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 29 SLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWV 84
LL IA P+ + ++AL +T R W I+ V E++ L + L S+ W
Sbjct: 31 GLLIIASS--PDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWH 86
Query: 85 LKECERIRRNKSNSYQDII 103
+ + N ++
Sbjct: 87 ELQRRLALFHDPNDCDPLL 105
>gi|222035426|emb|CAP78171.1| Uncharacterized protein yieE [Escherichia coli LF82]
Length = 253
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +W+ D P E + LI++ VLK +
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTD 160
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 161 DVLNDDPRDLQLL 173
>gi|26251225|ref|NP_757265.1| hypothetical protein c5419 [Escherichia coli CFT073]
gi|26111658|gb|AAN83839.1|AE016772_17 Hypothetical protein yjiN [Escherichia coli CFT073]
Length = 438
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 270 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 330 DSRVKERIARAGQW 343
>gi|170279728|gb|ACB11844.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 345
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE++ + IS+ + V
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ I ++ +R GL
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340
>gi|15804914|ref|NP_290955.1| hypothetical protein Z5938 [Escherichia coli O157:H7 EDL933]
gi|15834553|ref|NP_313326.1| hypothetical protein ECs5299 [Escherichia coli O157:H7 str. Sakai]
gi|168749498|ref|ZP_02774520.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113]
gi|168754911|ref|ZP_02779918.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|168760588|ref|ZP_02785595.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501]
gi|168766621|ref|ZP_02791628.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168773948|ref|ZP_02798955.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196]
gi|168781630|ref|ZP_02806637.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076]
gi|168784984|ref|ZP_02809991.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|168797913|ref|ZP_02822920.1| putative membrane protein [Escherichia coli O157:H7 str. EC508]
gi|195937351|ref|ZP_03082733.1| hypothetical protein EscherichcoliO157_13015 [Escherichia coli
O157:H7 str. EC4024]
gi|208805722|ref|ZP_03248059.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206]
gi|208813284|ref|ZP_03254613.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045]
gi|208819235|ref|ZP_03259555.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042]
gi|209400166|ref|YP_002273864.1| hypothetical protein ECH74115_5850 [Escherichia coli O157:H7 str.
EC4115]
gi|217324994|ref|ZP_03441078.1| putative membrane protein [Escherichia coli O157:H7 str. TW14588]
gi|254796340|ref|YP_003081177.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
gi|261226698|ref|ZP_05940979.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256914|ref|ZP_05949447.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
FRIK966]
gi|12519355|gb|AAG59521.1|AE005665_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13364777|dbj|BAB38722.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770337|gb|EDU34181.1| putative membrane protein [Escherichia coli O157:H7 str. EC4196]
gi|188016146|gb|EDU54268.1| putative membrane protein [Escherichia coli O157:H7 str. EC4113]
gi|189000699|gb|EDU69685.1| putative membrane protein [Escherichia coli O157:H7 str. EC4076]
gi|189357792|gb|EDU76211.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189364033|gb|EDU82452.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189368870|gb|EDU87286.1| putative membrane protein [Escherichia coli O157:H7 str. EC4501]
gi|189374844|gb|EDU93260.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|189379436|gb|EDU97852.1| putative membrane protein [Escherichia coli O157:H7 str. EC508]
gi|208725523|gb|EDZ75124.1| putative membrane protein [Escherichia coli O157:H7 str. EC4206]
gi|208734561|gb|EDZ83248.1| putative membrane protein [Escherichia coli O157:H7 str. EC4045]
gi|208739358|gb|EDZ87040.1| putative membrane protein [Escherichia coli O157:H7 str. EC4042]
gi|209161566|gb|ACI38999.1| putative membrane protein [Escherichia coli O157:H7 str. EC4115]
gi|209747336|gb|ACI71975.1| hypothetical protein ECs5299 [Escherichia coli]
gi|209747338|gb|ACI71976.1| hypothetical protein ECs5299 [Escherichia coli]
gi|209747340|gb|ACI71977.1| hypothetical protein ECs5299 [Escherichia coli]
gi|217321215|gb|EEC29639.1| putative membrane protein [Escherichia coli O157:H7 str. TW14588]
gi|254595740|gb|ACT75101.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
TW14359]
gi|320190544|gb|EFW65194.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
EC1212]
gi|326345346|gb|EGD69089.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
1125]
gi|326346799|gb|EGD70533.1| Putative inner membrane protein [Escherichia coli O157:H7 str.
1044]
Length = 423
Score = 35.2 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72
DR+ L K+ P +A+ + S +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317
Query: 73 VKLNLISIGLW 83
VK + G W
Sbjct: 318 VKERIARAGQW 328
>gi|254506859|ref|ZP_05118998.1| flagellar protein FliS [Vibrio parahaemolyticus 16]
gi|219550144|gb|EED27130.1| flagellar protein FliS [Vibrio parahaemolyticus 16]
Length = 136
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + Q S+ K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMEQGNIPVKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + E +N D+ID+I +
Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPAKIDDVIDIIREI 115
>gi|323491441|ref|ZP_08096625.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546]
gi|323314310|gb|EGA67390.1| flagellar protein FliS [Vibrio brasiliensis LMG 20546]
Length = 136
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + Q S+ K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + E +N D+I++I +
Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIEIIREI 115
>gi|320638723|gb|EFX08381.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
G5101]
Length = 423
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTSRVWVVFIQDLVSEDNHLPQE 72
DR+ L K+ P +A+ + S +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFLSELWGDLREWLKADINSEDSR 317
Query: 73 VKLNLISIGLW 83
VK + G W
Sbjct: 318 VKERIARAGQW 328
>gi|227885173|ref|ZP_04002978.1| membrane protein [Escherichia coli 83972]
gi|300980678|ref|ZP_07175145.1| conserved domain protein [Escherichia coli MS 45-1]
gi|301048300|ref|ZP_07195333.1| conserved domain protein [Escherichia coli MS 185-1]
gi|227838002|gb|EEJ48468.1| membrane protein [Escherichia coli 83972]
gi|300299860|gb|EFJ56245.1| conserved domain protein [Escherichia coli MS 185-1]
gi|300409205|gb|EFJ92743.1| conserved domain protein [Escherichia coli MS 45-1]
gi|307556575|gb|ADN49350.1| conserved inner membrane protein [Escherichia coli ABU 83972]
gi|315293258|gb|EFU52610.1| conserved domain protein [Escherichia coli MS 153-1]
Length = 426
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|52420935|emb|CAH55814.1| hypothetical protein [Escherichia coli]
Length = 426
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATLALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|83310456|ref|YP_420720.1| hypothetical protein amb1357 [Magnetospirillum magneticum AMB-1]
gi|82945297|dbj|BAE50161.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 159
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 18 KREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL 77
+ LD + L A + ++AL RVW + P
Sbjct: 33 ETGALALDEAAQELDRACDTAS----FLKALERNQRVWRTLAHIAAARAWQFPS---QRQ 85
Query: 78 ISIGLWVLKECERIRRNKSNSYQDIIDVISIVRD 111
++ L + +ID+ V D
Sbjct: 86 VAYALSTDEHGNGA---NDERVNTLIDINREVSD 116
>gi|284165633|ref|YP_003403912.1| aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM
5511]
gi|284015288|gb|ADB61239.1| Aldehyde ferredoxin oxidoreductase [Haloterrigena turkmenica DSM
5511]
Length = 614
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 33/125 (26%)
Query: 9 IQESSIECRKREHWILDRSIS------------LLSIAHKSLPNSKQAVEALF--YTSR- 53
+ SS + R E L + S ++ P+ + V A+ R
Sbjct: 402 MDYSSYDPRGAETMALAYATSDRGACHRRARPVESEAVGRAWPDDRARVAAVAGEQNRRA 461
Query: 54 -VWVVFIQDLVSEDNHLPQEV-------------KLNLISIG--LWVLKECERIRRNKSN 97
+W + D + + L +++ + +L + G +W L +R S
Sbjct: 462 VLWSLIADDFLED--ALSEDLGAEWLAAVGYDVGRADLATAGERIWTLIRLFNVREGFSR 519
Query: 98 SYQDI 102
+
Sbjct: 520 EDDAL 524
>gi|291295580|ref|YP_003506978.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279]
gi|290470539|gb|ADD27958.1| hypothetical protein Mrub_1195 [Meiothermus ruber DSM 1279]
Length = 314
Score = 34.8 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 3 QYYHETIQESSIECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDL 62
Q Y E E +RE + L+ + V+ L Y +W + + +
Sbjct: 126 QGYGEVFGEGPATGFRRERMA--QVAGRLAALE---GSVAVLVDVLEYPWLLWALPAERV 180
Query: 63 VSEDNHLPQEV 73
V +H P E+
Sbjct: 181 VLPGHHTPTEL 191
>gi|300940898|ref|ZP_07155424.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|300454328|gb|EFK17821.1| conserved hypothetical protein [Escherichia coli MS 21-1]
Length = 253
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + + F +W+ D P E + LI++ VLK
Sbjct: 109 LQRATRGFHSPHASDNHTFSSNESLWISKQND--------PNEARAQLITLRRSVLKLTG 160
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 161 DVLNDDPRDLQLL 173
>gi|325498700|gb|EGC96559.1| hypothetical protein ECD227_2797 [Escherichia fergusonii ECD227]
Length = 414
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 246 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 305
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 306 DSRVKERIARAGQW 319
>gi|300926432|ref|ZP_07142228.1| conserved domain protein [Escherichia coli MS 182-1]
gi|300417539|gb|EFK00850.1| conserved domain protein [Escherichia coli MS 182-1]
Length = 426
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAIKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|189010086|ref|ZP_02804946.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189401809|ref|ZP_02778613.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189405695|ref|ZP_02823759.2| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|208807262|ref|ZP_03249599.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
gi|189002295|gb|EDU71281.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4076]
gi|189358906|gb|EDU77325.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4401]
gi|189378705|gb|EDU97121.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC508]
gi|208727063|gb|EDZ76664.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4206]
Length = 198
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +WV D P E + LI++ VLK
Sbjct: 54 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 105
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 106 DVLNDDPRDLQLL 118
>gi|283788348|ref|YP_003368213.1| hypothetical protein ROD_48251 [Citrobacter rodentium ICC168]
gi|282951802|emb|CBG91512.1| putative membrane protein [Citrobacter rodentium ICC168]
Length = 423
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L KS P+ E++ + +W Q L ++ N
Sbjct: 258 RHAFDRATFRLIDKLKSDPDMAARAESIKDYLKEDETFNRYLGELWDDLRQWLKNDINAD 317
Query: 70 PQEVKLNLISIGLW 83
VK + + G W
Sbjct: 318 DSRVKQRIANAGQW 331
>gi|261252317|ref|ZP_05944890.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891]
gi|260935708|gb|EEX91697.1| flagellar biosynthesis protein FliS [Vibrio orientalis CIP 102891]
Length = 136
Score = 34.8 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + Q S+ K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPMKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + E +N D+ID+I +
Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITEANHQNNPQPIDDVIDIIREI 115
>gi|332087028|gb|EGI92162.1| hypothetical protein SB359474_5053 [Shigella boydii 3594-74]
Length = 415
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 306
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 307 DSRVKERIARAGQW 320
>gi|320179370|gb|EFW54328.1| Putative inner membrane protein [Shigella boydii ATCC 9905]
Length = 422
Score = 34.8 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 254 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 313
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 314 DSRVKERIARAGQW 327
>gi|218702562|ref|YP_002410191.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39]
gi|218372548|emb|CAR20422.1| putative phosphopantetheinyl transferase [Escherichia coli IAI39]
Length = 253
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +W+ D P E + LI++ VLK
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWISKQND--------PNETRAQLITLRRSVLKLTG 160
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 161 DVLNDDPRDLQLL 173
>gi|262173960|ref|ZP_06041637.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451]
gi|261891318|gb|EEY37305.1| hypothetical protein VII_001050 [Vibrio mimicus MB-451]
Length = 410
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 36 KSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNL----ISIGLWVLKECERI 91
S P+ + ++AL +T R W I+ V E++ L + L S+ W +
Sbjct: 4 ASSPDQDELLQALHHTRRYWSWLIK--VEEESALSGLLSDGLWEAETSLSEWHELQRRLA 61
Query: 92 RRNKSNSYQDII 103
+ N ++
Sbjct: 62 LFHDPNDCDPLL 73
>gi|170279726|gb|ACB11843.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 345
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 30 LLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLISI----GLWVL 85
LL A ++ EAL Y +W + QE++ + IS+ + V
Sbjct: 264 LLIAARIVELLGRRGWEALKY---LWNLLQY--------WSQELRNSAISLLNTTAIAVA 312
Query: 86 KECERIRRNKSNSYQDIIDVISIVRDGL 113
+ +RI ++ I ++ +R GL
Sbjct: 313 EGTDRIIEVLQRIFRAICNIPRRIRQGL 340
>gi|260871059|ref|YP_003237461.1| hypothetical protein ECO111_5193 [Escherichia coli O111:H- str.
11128]
gi|257767415|dbj|BAI38910.1| conserved predicted inner membrane protein [Escherichia coli
O111:H- str. 11128]
gi|323176232|gb|EFZ61824.1| hypothetical protein ECOK1180_4923 [Escherichia coli 1180]
Length = 426
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|84388106|ref|ZP_00991002.1| flagellar protein FliS [Vibrio splendidus 12B01]
gi|84377173|gb|EAP94043.1| flagellar protein FliS [Vibrio splendidus 12B01]
Length = 136
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 3 QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + +S + K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115
>gi|331665994|ref|ZP_08366888.1| putative membrane protein [Escherichia coli TA143]
gi|331057045|gb|EGI29039.1| putative membrane protein [Escherichia coli TA143]
Length = 426
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|156975436|ref|YP_001446343.1| flagellar protein FliS [Vibrio harveyi ATCC BAA-1116]
gi|156527030|gb|ABU72116.1| hypothetical protein VIBHAR_03167 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSI--AHKSLPNSKQAVEALFYTSRVWVV 57
Q Y + Q S+ K ++ +I L A N E L + +
Sbjct: 6 QAYKKVSVDSQLSAASPHKVIQMLMAGAIERLIQGKAAMQAGNIPTKGERLGKALDIIIA 65
Query: 58 FIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
L ED ++ NL S+ +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMEDGG---DIASNLDSLYEFMITQISAANHQNDPQPIDDVIDIIREI 115
>gi|332083312|gb|EGI88543.1| hypothetical protein SB521682_5192 [Shigella boydii 5216-82]
Length = 426
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|157163782|ref|YP_001461100.1| hypothetical protein EcHS_A4564 [Escherichia coli HS]
gi|300823785|ref|ZP_07103910.1| conserved domain protein [Escherichia coli MS 119-7]
gi|331680443|ref|ZP_08381102.1| putative membrane protein [Escherichia coli H591]
gi|157069462|gb|ABV08717.1| putative membrane protein [Escherichia coli HS]
gi|300523697|gb|EFK44766.1| conserved domain protein [Escherichia coli MS 119-7]
gi|331071906|gb|EGI43242.1| putative membrane protein [Escherichia coli H591]
Length = 426
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|254037361|ref|ZP_04871438.1| putative membrane protein [Escherichia sp. 1_1_43]
gi|300916490|ref|ZP_07133226.1| conserved domain protein [Escherichia coli MS 115-1]
gi|300938248|ref|ZP_07153014.1| conserved domain protein [Escherichia coli MS 21-1]
gi|300948878|ref|ZP_07162942.1| conserved domain protein [Escherichia coli MS 116-1]
gi|300954922|ref|ZP_07167341.1| conserved domain protein [Escherichia coli MS 175-1]
gi|301325222|ref|ZP_07218743.1| conserved domain protein [Escherichia coli MS 78-1]
gi|226840467|gb|EEH72469.1| putative membrane protein [Escherichia sp. 1_1_43]
gi|284924528|emb|CBG37666.1| putative membrane protein [Escherichia coli 042]
gi|300318153|gb|EFJ67937.1| conserved domain protein [Escherichia coli MS 175-1]
gi|300416217|gb|EFJ99527.1| conserved domain protein [Escherichia coli MS 115-1]
gi|300451631|gb|EFK15251.1| conserved domain protein [Escherichia coli MS 116-1]
gi|300456753|gb|EFK20246.1| conserved domain protein [Escherichia coli MS 21-1]
gi|300847939|gb|EFK75699.1| conserved domain protein [Escherichia coli MS 78-1]
gi|315616287|gb|EFU96906.1| conserved hypothetical protein [Escherichia coli 3431]
Length = 426
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIEKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|323935272|gb|EGB31625.1| membrane protein [Escherichia coli E1520]
Length = 426
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|323189811|gb|EFZ75089.1| hypothetical protein ECRN5871_1596 [Escherichia coli RN587/1]
Length = 426
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|300905314|ref|ZP_07123085.1| conserved domain protein [Escherichia coli MS 84-1]
gi|300402802|gb|EFJ86340.1| conserved domain protein [Escherichia coli MS 84-1]
gi|315255812|gb|EFU35780.1| conserved domain protein [Escherichia coli MS 85-1]
Length = 426
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|293417805|ref|ZP_06660427.1| yjiN protein [Escherichia coli B185]
gi|291430523|gb|EFF03521.1| yjiN protein [Escherichia coli B185]
Length = 426
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|188493079|ref|ZP_03000349.1| conserved hypothetical protein [Escherichia coli 53638]
gi|193063751|ref|ZP_03044839.1| conserved hypothetical protein [Escherichia coli E22]
gi|260847153|ref|YP_003224931.1| hypothetical protein ECO103_5118 [Escherichia coli O103:H2 str.
12009]
gi|260858503|ref|YP_003232394.1| hypothetical protein ECO26_5533 [Escherichia coli O26:H11 str.
11368]
gi|300818462|ref|ZP_07098671.1| conserved domain protein [Escherichia coli MS 107-1]
gi|307313729|ref|ZP_07593348.1| protein of unknown function DUF445 [Escherichia coli W]
gi|188488278|gb|EDU63381.1| conserved hypothetical protein [Escherichia coli 53638]
gi|192930738|gb|EDV83344.1| conserved hypothetical protein [Escherichia coli E22]
gi|257757152|dbj|BAI28654.1| conserved predicted inner membrane protein [Escherichia coli
O26:H11 str. 11368]
gi|257762300|dbj|BAI33797.1| conserved predicted inner membrane protein [Escherichia coli
O103:H2 str. 12009]
gi|300528866|gb|EFK49928.1| conserved domain protein [Escherichia coli MS 107-1]
gi|306906552|gb|EFN37065.1| protein of unknown function DUF445 [Escherichia coli W]
gi|315063640|gb|ADT77967.1| conserved inner membrane protein [Escherichia coli W]
gi|320200551|gb|EFW75137.1| Putative inner membrane protein [Escherichia coli EC4100B]
gi|323157634|gb|EFZ43740.1| hypothetical protein ECEPECA14_0488 [Escherichia coli EPECa14]
gi|323380280|gb|ADX52548.1| protein of unknown function DUF445 [Escherichia coli KO11]
Length = 426
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|323960203|gb|EGB55846.1| membrane protein [Escherichia coli H489]
Length = 426
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|148976408|ref|ZP_01813114.1| flagellar protein FliS [Vibrionales bacterium SWAT-3]
gi|145964231|gb|EDK29487.1| flagellar protein FliS [Vibrionales bacterium SWAT-3]
Length = 136
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 3 QYYHETIQES---SIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + +S + K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLTAASPHKIVQMLMAGAIERLIQGKAAMQAGNIPVKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECERI-RRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + +N D+ID+I +
Sbjct: 66 LRSCLSMDDGGD-------IAKNLDQLYEFMITQISAANHKNDPQPIDDVIDIIREI 115
>gi|82546683|ref|YP_410630.1| hypothetical protein SBO_4388 [Shigella boydii Sb227]
gi|187730651|ref|YP_001882917.1| hypothetical protein SbBS512_E4768 [Shigella boydii CDC 3083-94]
gi|218698181|ref|YP_002405848.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|309795608|ref|ZP_07690024.1| conserved domain protein [Escherichia coli MS 145-7]
gi|81248094|gb|ABB68802.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|187427643|gb|ACD06917.1| putatitve membrane protein [Shigella boydii CDC 3083-94]
gi|218354913|emb|CAV02114.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli 55989]
gi|308120732|gb|EFO57994.1| conserved domain protein [Escherichia coli MS 145-7]
gi|320186869|gb|EFW61587.1| Putative inner membrane protein [Shigella flexneri CDC 796-83]
gi|332346393|gb|AEE59727.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 426
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|331650472|ref|ZP_08351544.1| putative membrane protein [Escherichia coli M605]
gi|331040866|gb|EGI13024.1| putative membrane protein [Escherichia coli M605]
Length = 438
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 270 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 330 DSRVKERIARAGQW 343
>gi|218692726|ref|YP_002400938.1| hypothetical protein ECED1_5207 [Escherichia coli ED1a]
gi|218430290|emb|CAR11159.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli ED1a]
Length = 426
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|323965449|gb|EGB60904.1| membrane protein [Escherichia coli M863]
gi|327250256|gb|EGE61975.1| hypothetical protein ECSTEC7V_5061 [Escherichia coli STEC_7v]
Length = 426
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|256019967|ref|ZP_05433832.1| hypothetical protein ShiD9_13687 [Shigella sp. D9]
gi|332281113|ref|ZP_08393526.1| conserved hypothetical protein [Shigella sp. D9]
gi|332103465|gb|EGJ06811.1| conserved hypothetical protein [Shigella sp. D9]
Length = 426
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|168748567|ref|ZP_02773589.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|168759904|ref|ZP_02784911.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|168766204|ref|ZP_02791211.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|168772248|ref|ZP_02797255.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|168786548|ref|ZP_02811555.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|195936335|ref|ZP_03081717.1| hypothetical protein EscherichcoliO157_07703 [Escherichia coli
O157:H7 str. EC4024]
gi|208814251|ref|ZP_03255580.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208818972|ref|ZP_03259292.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209398815|ref|YP_002273240.1| hypothetical protein ECH74115_5143 [Escherichia coli O157:H7 str.
EC4115]
gi|217325378|ref|ZP_03441462.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|254795717|ref|YP_003080554.1| putative phosphopantetheinyl transferase [Escherichia coli O157:H7
str. TW14359]
gi|261225867|ref|ZP_05940148.1| hypothetical protein EscherichiacoliO157_14878 [Escherichia coli
O157:H7 str. FRIK2000]
gi|261258912|ref|ZP_05951445.1| hypothetical protein EscherichiacoliO157EcO_24367 [Escherichia coli
O157:H7 str. FRIK966]
gi|187771634|gb|EDU35478.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4196]
gi|188016986|gb|EDU55108.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4113]
gi|189364644|gb|EDU83063.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4486]
gi|189369686|gb|EDU88102.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4501]
gi|189373370|gb|EDU91786.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC869]
gi|208735528|gb|EDZ84215.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4045]
gi|208739095|gb|EDZ86777.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4042]
gi|209160215|gb|ACI37648.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
EC4115]
gi|217321599|gb|EEC30023.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
TW14588]
gi|254595117|gb|ACT74478.1| predicted phosphopantetheinyl transferase [Escherichia coli O157:H7
str. TW14359]
gi|320191189|gb|EFW65839.1| hypothetical protein ECoD_02610 [Escherichia coli O157:H7 str.
EC1212]
gi|320639439|gb|EFX09054.1| hypothetical protein ECO5101_06068 [Escherichia coli O157:H7 str.
G5101]
gi|320644880|gb|EFX13916.1| hypothetical protein ECO9389_11975 [Escherichia coli O157:H- str.
493-89]
gi|320650146|gb|EFX18642.1| hypothetical protein ECO2687_17425 [Escherichia coli O157:H- str. H
2687]
gi|320655494|gb|EFX23429.1| hypothetical protein ECO7815_14622 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661119|gb|EFX28555.1| hypothetical protein ECO5905_17658 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666246|gb|EFX33252.1| hypothetical protein ECOSU61_05096 [Escherichia coli O157:H7 str.
LSU-61]
gi|326337240|gb|EGD61075.1| hypothetical protein ECoA_05288 [Escherichia coli O157:H7 str.
1044]
gi|326341611|gb|EGD65400.1| hypothetical protein ECF_03196 [Escherichia coli O157:H7 str. 1125]
Length = 249
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +WV D P E + LI++ VLK
Sbjct: 105 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 156
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 157 DVLNDDPRDLQLL 169
>gi|260767711|ref|ZP_05876646.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972]
gi|260617220|gb|EEX42404.1| flagellar biosynthesis protein FliS [Vibrio furnissii CIP 102972]
gi|315179457|gb|ADT86371.1| flagellar protein FliS [Vibrio furnissii NCTC 11218]
Length = 136
Score = 34.4 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 3 QYYHETI---QESSIECRKREHWILDRSISLLSIAHKS------LPNSKQAVEALFYTSR 53
Q Y + Q S+ K ++ +I L + ++ +AL
Sbjct: 6 QAYKKVSVDSQLSAASPHKIVQMLMAGAIERLIQGKAAMMQGNIPAKGERLGKALDIIIS 65
Query: 54 VWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKE-CERIRRNKSNSYQDIIDVISIV 109
+ D + + NL + +++ + +N+ D+ID+I +
Sbjct: 66 LRSCLSMDDGGD-------IAQNLDQLYEFMITQITAANHQNEPQLLDDVIDIIREI 115
>gi|332653418|ref|ZP_08419163.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
gi|332518564|gb|EGJ48167.1| ATP-dependent nuclease subunit A [Ruminococcaceae bacterium D16]
Length = 1206
Score = 34.4 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 14 IECRKREHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEV 73
R+ E ++ + LL +A AL ++ +D + + + E
Sbjct: 839 AVSRQLEREMMSEEMRLLYVAMTRAKEKLILTLALTEGAKALERLAEDAAAPVSPVALE- 897
Query: 74 KLNLISIGLWVLKECERIRRNKSNSYQDII 103
+ S+G W+L + R + + ++
Sbjct: 898 RQQ--SVGQWILLH--ALTRPEGEILRTLV 923
>gi|320644436|gb|EFX13501.1| hypothetical protein ECO9389_14788 [Escherichia coli O157:H- str.
493-89]
gi|320649754|gb|EFX18278.1| hypothetical protein ECO2687_22384 [Escherichia coli O157:H- str. H
2687]
Length = 426
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|330909788|gb|EGH38298.1| putative inner membrane protein [Escherichia coli AA86]
Length = 426
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|324115268|gb|EGC09232.1| hypothetical protein ERIG_00144 [Escherichia fergusonii B253]
Length = 426
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|110644779|ref|YP_672509.1| hypothetical protein ECP_4672 [Escherichia coli 536]
gi|191170706|ref|ZP_03032258.1| putative membrane protein [Escherichia coli F11]
gi|110346371|gb|ABG72608.1| putative membrane protein [Escherichia coli 536]
gi|190908930|gb|EDV68517.1| putative membrane protein [Escherichia coli F11]
gi|324014023|gb|EGB83242.1| conserved domain protein [Escherichia coli MS 60-1]
Length = 426
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|291285721|ref|YP_003502539.1| hypothetical protein G2583_5141 [Escherichia coli O55:H7 str.
CB9615]
gi|290765594|gb|ADD59555.1| conserved hypothetical protein [Escherichia coli O55:H7 str.
CB9615]
gi|320654803|gb|EFX22772.1| hypothetical protein ECO7815_09208 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660655|gb|EFX28116.1| hypothetical protein ECO5905_15158 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320665582|gb|EFX32628.1| hypothetical protein ECOSU61_14826 [Escherichia coli O157:H7 str.
LSU-61]
Length = 426
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|320195296|gb|EFW69924.1| Putative inner membrane protein [Escherichia coli WV_060327]
Length = 426
Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L KS P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKSDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|91213994|ref|YP_543980.1| hypothetical protein UTI89_C5046 [Escherichia coli UTI89]
gi|91075568|gb|ABE10449.1| hypothetical protein YjiN [Escherichia coli UTI89]
Length = 438
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
D + L K+ P +A+ + +W + L ++ N
Sbjct: 270 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 329
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 330 DSRVKERIARAGQW 343
>gi|15804309|ref|NP_290348.1| hypothetical protein Z5207 [Escherichia coli O157:H7 EDL933]
gi|15833903|ref|NP_312676.1| hypothetical protein ECs4649 [Escherichia coli O157:H7 str. Sakai]
gi|291285133|ref|YP_003501951.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str.
CB9615]
gi|12518557|gb|AAG58912.1|AE005602_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13364124|dbj|BAB38072.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|209754008|gb|ACI75311.1| hypothetical protein ECs4649 [Escherichia coli]
gi|209754010|gb|ACI75312.1| hypothetical protein ECs4649 [Escherichia coli]
gi|209754012|gb|ACI75313.1| hypothetical protein ECs4649 [Escherichia coli]
gi|209754014|gb|ACI75314.1| hypothetical protein ECs4649 [Escherichia coli]
gi|209754016|gb|ACI75315.1| hypothetical protein ECs4649 [Escherichia coli]
gi|290765006|gb|ADD58967.1| hypothetical protein G2583_4503 [Escherichia coli O55:H7 str.
CB9615]
Length = 253
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 31 LSIAHKSLPNSKQAVEALFY-TSRVWVVFIQDLVSEDNHLPQEVKLNLISIGLWVLKECE 89
L A + + F +WV D P E + LI++ VLK
Sbjct: 109 LQRATRGFHSPHAPDNHTFSSNESLWVSKQND--------PNEARAQLITLRRSVLKLTG 160
Query: 90 RIRRNKSNSYQDI 102
+ + Q +
Sbjct: 161 DVLNDDPRDLQLL 173
>gi|116071677|ref|ZP_01468945.1| serine/threonine protein kinase [Synechococcus sp. BL107]
gi|116065300|gb|EAU71058.1| serine/threonine protein kinase [Synechococcus sp. BL107]
Length = 640
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 51 TSRVWVVFIQDLVSEDNHLPQEVKLNLISI--GLWVLKECERIRRN-KSNSYQDIID 104
RVW +D ++ LP ++ L S+ W + +++ + + ++
Sbjct: 412 LRRVWNELAEDWLARIEQLPPALRSRLGSLKQADWSDQRAALVKQGVTPRAVEQLVS 468
>gi|191168959|ref|ZP_03030727.1| conserved hypothetical protein [Escherichia coli B7A]
gi|237704083|ref|ZP_04534564.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300928843|ref|ZP_07144350.1| conserved domain protein [Escherichia coli MS 187-1]
gi|190901006|gb|EDV60787.1| conserved hypothetical protein [Escherichia coli B7A]
gi|226901995|gb|EEH88254.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|281181489|dbj|BAI57819.1| conserved hypothetical protein [Escherichia coli SE15]
gi|300463183|gb|EFK26676.1| conserved domain protein [Escherichia coli MS 187-1]
gi|315288309|gb|EFU47708.1| conserved domain protein [Escherichia coli MS 110-3]
gi|323955350|gb|EGB51121.1| membrane protein [Escherichia coli H263]
Length = 426
Score = 34.0 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEDFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|309787444|ref|ZP_07682056.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617]
gi|308925022|gb|EFP70517.1| uncharacterized yjiN domain protein [Shigella dysenteriae 1617]
Length = 190
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 22 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 81
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 82 DSRVKERIARAGQW 95
>gi|306815466|ref|ZP_07449615.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101]
gi|331660971|ref|ZP_08361903.1| putative membrane protein [Escherichia coli TA206]
gi|305851128|gb|EFM51583.1| hypothetical protein ECNC101_02658 [Escherichia coli NC101]
gi|315298314|gb|EFU57569.1| conserved domain protein [Escherichia coli MS 16-3]
gi|331052013|gb|EGI24052.1| putative membrane protein [Escherichia coli TA206]
Length = 426
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMTARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|222036084|emb|CAP78829.1| Uncharacterized protein yjiN [Escherichia coli LF82]
gi|312948970|gb|ADR29797.1| hypothetical protein NRG857_21950 [Escherichia coli O83:H1 str. NRG
857C]
Length = 426
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|301305137|ref|ZP_07211237.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1]
gi|300839642|gb|EFK67402.1| hypothetical protein HMPREF9347_03752 [Escherichia coli MS 124-1]
Length = 237
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 69 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 128
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 129 DSRVKERIARAGQW 142
>gi|323950572|gb|EGB46450.1| hypothetical protein ERKG_02900 [Escherichia coli H252]
gi|324005090|gb|EGB74309.1| conserved domain protein [Escherichia coli MS 57-2]
Length = 426
Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|293476600|ref|ZP_06665008.1| yjiN protein [Escherichia coli B088]
gi|291321053|gb|EFE60495.1| yjiN protein [Escherichia coli B088]
Length = 448
Score = 34.0 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
+ DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 280 RYAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 339
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 340 DSRVKERIARAGQW 353
>gi|117626656|ref|YP_859979.1| hypothetical protein APECO1_2082 [Escherichia coli APEC O1]
gi|115515780|gb|ABJ03855.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|294489948|gb|ADE88704.1| putative membrane protein [Escherichia coli IHE3034]
gi|307629511|gb|ADN73815.1| hypothetical protein UM146_22455 [Escherichia coli UM146]
Length = 426
Score = 34.0 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
D + L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDHATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|215489659|ref|YP_002332090.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
gi|215267731|emb|CAS12191.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 426
Score = 34.0 bits (77), Expect = 7.7, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLNADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|312966059|ref|ZP_07780285.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|312289302|gb|EFR17196.1| conserved hypothetical protein [Escherichia coli 2362-75]
Length = 415
Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 247 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 306
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 307 DSRVKERIARAGQW 320
>gi|170768609|ref|ZP_02903062.1| putatitve membrane protein [Escherichia albertii TW07627]
gi|170122713|gb|EDS91644.1| putatitve membrane protein [Escherichia albertii TW07627]
Length = 498
Score = 34.0 bits (77), Expect = 7.9, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 16 CRKREHWI---LDRSISLLSIAHKSLPNSKQAVEAL--------FYTS---RVWVVFIQD 61
R R H I DR+ L K+ P +A+ + +W +
Sbjct: 322 SRDRTHQIRHTFDRATFALIDKLKNDPEMAARADAVKNYLKKDEAFNRYLGELWGDLREW 381
Query: 62 LVSEDNHLPQEVKLNLISIGLW 83
L ++ N VK + G W
Sbjct: 382 LKTDINAENSHVKERIAQAGQW 403
>gi|218703035|ref|YP_002410664.1| hypothetical protein ECIAI39_4813 [Escherichia coli IAI39]
gi|218373021|emb|CAR20910.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli IAI39]
Length = 426
Score = 34.0 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWRDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|293408026|ref|ZP_06651866.1| conserved hypothetical protein [Escherichia coli B354]
gi|291472277|gb|EFF14759.1| conserved hypothetical protein [Escherichia coli B354]
Length = 426
Score = 33.6 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|331671452|ref|ZP_08372250.1| putative membrane protein [Escherichia coli TA280]
gi|331681318|ref|ZP_08381955.1| putative membrane protein [Escherichia coli H299]
gi|331071297|gb|EGI42654.1| putative membrane protein [Escherichia coli TA280]
gi|331081539|gb|EGI52700.1| putative membrane protein [Escherichia coli H299]
Length = 426
Score = 33.6 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|301021372|ref|ZP_07185398.1| conserved domain protein [Escherichia coli MS 69-1]
gi|300398113|gb|EFJ81651.1| conserved domain protein [Escherichia coli MS 69-1]
Length = 426
Score = 33.6 bits (76), Expect = 9.1, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L ++ N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARTDAVKSYLKEDEAFNRYLSELWGDLREWLKADINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|212536432|ref|XP_002148372.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
gi|210070771|gb|EEA24861.1| conserved hypothetical protein [Penicillium marneffei ATCC 18224]
Length = 551
Score = 33.6 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 27 SISLLSIAHKSLPNSKQAVEALFYTSRVWVVFIQDLVS--EDNHLPQEVKLNLISIGLWV 84
+ L+S A N A+ + R+ I DL + + ++ +L++I L
Sbjct: 417 AQGLMSQARLLGGNIGLAIATIVLNQRL----ISDLKGVVPASEI-DSLRHSLLAISLLT 471
Query: 85 LKECERIRRNKSNSYQDIIDVISIVRDGL 113
++ E +RR+ + ++ +D+ V GL
Sbjct: 472 PQQSEIVRRSFAGAFVTQLDINLGVA-GL 499
>gi|170681238|ref|YP_001746794.1| hypothetical protein EcSMS35_4883 [Escherichia coli SMS-3-5]
gi|194426617|ref|ZP_03059171.1| putative membrane protein [Escherichia coli B171]
gi|194437754|ref|ZP_03069849.1| putative membrane protein [Escherichia coli 101-1]
gi|256025268|ref|ZP_05439133.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
gi|307136543|ref|ZP_07495899.1| conserved inner membrane protein [Escherichia coli H736]
gi|331640385|ref|ZP_08341533.1| putative membrane protein [Escherichia coli H736]
gi|170518956|gb|ACB17134.1| putative membrane protein [Escherichia coli SMS-3-5]
gi|194415356|gb|EDX31624.1| putative membrane protein [Escherichia coli B171]
gi|194423250|gb|EDX39242.1| putative membrane protein [Escherichia coli 101-1]
gi|309704807|emb|CBJ04158.1| putative membrane protein [Escherichia coli ETEC H10407]
gi|323163299|gb|EFZ49128.1| hypothetical protein ECE128010_0522 [Escherichia coli E128010]
gi|323171357|gb|EFZ57004.1| hypothetical protein ECLT68_3997 [Escherichia coli LT-68]
gi|323939656|gb|EGB35860.1| membrane protein [Escherichia coli E482]
gi|323969420|gb|EGB64715.1| membrane protein [Escherichia coli TA007]
gi|331040131|gb|EGI12338.1| putative membrane protein [Escherichia coli H736]
Length = 426
Score = 33.6 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|301019606|ref|ZP_07183765.1| conserved domain protein [Escherichia coli MS 196-1]
gi|299882143|gb|EFI90354.1| conserved domain protein [Escherichia coli MS 196-1]
Length = 426
Score = 33.6 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
>gi|16132157|ref|NP_418756.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str.
K-12 substr. MG1655]
gi|89111048|ref|AP_004828.1| conserved inner membrane protein [Escherichia coli str. K-12
substr. W3110]
gi|218708006|ref|YP_002415525.1| hypothetical protein ECUMN_4947 [Escherichia coli UMN026]
gi|238903429|ref|YP_002929225.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|253775041|ref|YP_003037872.1| hypothetical protein ECBD_3694 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164257|ref|YP_003047367.1| inner membrane protein [Escherichia coli B str. REL606]
gi|297517021|ref|ZP_06935407.1| conserved inner membrane protein [Escherichia coli OP50]
gi|300899279|ref|ZP_07117546.1| conserved domain protein [Escherichia coli MS 198-1]
gi|301646848|ref|ZP_07246696.1| conserved domain protein [Escherichia coli MS 146-1]
gi|331650813|ref|ZP_08351841.1| putative membrane protein [Escherichia coli M718]
gi|732093|sp|P39385|YJIN_ECOLI RecName: Full=Uncharacterized protein yjiN
gi|537177|gb|AAA97232.1| ORF_f426 [Escherichia coli str. K-12 substr. MG1655]
gi|1790793|gb|AAC77292.1| zinc-type alcohol dehydrogenase-like protein [Escherichia coli str.
K-12 substr. MG1655]
gi|85677079|dbj|BAE78329.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
W3110]
gi|218435103|emb|CAR16058.1| conserved hypothetical protein; putative inner membrane protein
[Escherichia coli UMN026]
gi|238860207|gb|ACR62205.1| conserved inner membrane protein [Escherichia coli BW2952]
gi|242379853|emb|CAQ34685.1| hypothetical protein B21_04168 [Escherichia coli BL21(DE3)]
gi|253326085|gb|ACT30687.1| protein of unknown function DUF445 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976160|gb|ACT41831.1| conserved inner membrane protein [Escherichia coli B str. REL606]
gi|253980316|gb|ACT45986.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
gi|260450848|gb|ACX41270.1| protein of unknown function DUF445 [Escherichia coli DH1]
gi|300357122|gb|EFJ72992.1| conserved domain protein [Escherichia coli MS 198-1]
gi|301074979|gb|EFK89785.1| conserved domain protein [Escherichia coli MS 146-1]
gi|315138891|dbj|BAJ46050.1| conserved inner membrane protein [Escherichia coli DH1]
gi|331051267|gb|EGI23316.1| putative membrane protein [Escherichia coli M718]
Length = 426
Score = 33.6 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 21 HWILDRSISLLSIAHKSLPNSKQAVEALF--------YTS---RVWVVFIQDLVSEDNHL 69
DR+ L K+ P +A+ + +W + L + N
Sbjct: 258 RHAFDRATFALIDKLKNDPEMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKVDINSE 317
Query: 70 PQEVKLNLISIGLW 83
VK + G W
Sbjct: 318 DSRVKERIARAGQW 331
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.160 0.464
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,326,723,690
Number of Sequences: 14124377
Number of extensions: 48240031
Number of successful extensions: 210303
Number of sequences better than 10.0: 463
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 209751
Number of HSP's gapped (non-prelim): 556
length of query: 114
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 33
effective length of database: 3,698,719,093
effective search space: 122057730069
effective search space used: 122057730069
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 76 (33.6 bits)