RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>gnl|CDD|35001 COG5442, FlaF, Flagellar biosynthesis regulator FlaF [Cell motility
           and secretion].
          Length = 115

 Score =  114 bits (287), Expect = 5e-27
 Identities = 54/115 (46%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 1   MRQYYHETIQESSIECRK-REHWILDRSISLLSIAHKSLPNSKQAVEALFYTSRVWVVFI 59
           M Q+ +  + E  +   K RE  +L RSI+LL  A     +S++A+EAL++T RVW  FI
Sbjct: 1   MYQFSYADVMEDGVASAKDRERQLLTRSIALLDAARAPGDDSREAIEALYFTRRVWTRFI 60

Query: 60  QDLVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDGLK 114
           +DL S DN LP E++ NLISIG+WVL+E E IR+ +SN+++ +I++  I+RDGLK
Sbjct: 61  EDLGSPDNQLPMELRANLISIGIWVLRESEAIRQGESNNFEGLIEITQIIRDGLK 115


>gnl|CDD|37654 KOG2443, KOG2443, KOG2443, Uncharacterized conserved protein
           [Function unknown].
          Length = 362

 Score = 30.7 bits (69), Expect = 0.082
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 18  KREHWILDR----SISLLSIAHKSLPNSKQAV---EALFYTSRVWVVFIQDLVSEDNHLP 70
             +HW+ +     S  +  I    LP+ K        LF+    WV     +V+    L 
Sbjct: 170 LTKHWLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFGTNVMVTVATSLD 229

Query: 71  QEVKLNL 77
             +KL  
Sbjct: 230 APIKLVF 236


>gnl|CDD|145046 pfam01691, Adeno_E1B_19K, Adenovirus E1B 19K protein / small
           t-antigen.  This family consists of adenovirus E1B 19K
           protein or small t-antigen. The E1B 19K protein inhibits
           E1A induced apoptosis and hence prolongs the viability
           of the host cell. It can also inhibit apoptosis mediated
           by tumour necrosis factor alpha and Fas antigen. E1B 19K
           blocks apoptosis by interacting with and inhibiting the
           p53-inducible and death- promoting Bax protein. The E1B
           region of adenovirus encodes two proteins E1B 19K the
           small t-antigen as found in this family and E1B 55K the
           large t-antigen which is not found in this family; both
           of these proteins inhibit E1A induced apoptosis.
          Length = 135

 Score = 24.5 bits (54), Expect = 6.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 30  LLSIAHKSLPNSKQAVEALFYTSR-------VWVVFIQDLVSEDNHLPQEVKLNLISIGL 82
            L++ H SL   K  V  L ++S         ++ FI D  S D+HL +   L+L+   L
Sbjct: 64  SLNLGHTSLFEEK-VVPELDFSSPGRTVASLAFLAFILDKWSADSHLSEGYLLDLLCAPL 122

Query: 83  W 83
           W
Sbjct: 123 W 123


>gnl|CDD|39067 KOG3863, KOG3863, KOG3863, bZIP transcription factor NRF1
           [Transcription].
          Length = 604

 Score = 24.2 bits (52), Expect = 6.9
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 62  LVSEDNHLPQEVKLNLISIGLWVLKECERIRRNKSNSYQDIIDVISIVRDG 112
           L+ E + L   + +    +     +  +++R  + N Y      +    DG
Sbjct: 530 LLRERDELDSTLGVMKQQLSELYQEVFQQLRDEEGNPYSPSQYALQQAADG 580


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,360,888
Number of extensions: 60226
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 114
Length of database: 6,263,737
Length adjustment: 80
Effective length of query: 34
Effective length of database: 4,535,017
Effective search space: 154190578
Effective search space used: 154190578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)