RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780522|ref|YP_003064935.1| flagellar biosynthesis
regulatory protein FlaF [Candidatus Liberibacter asiaticus str. psy62]
         (114 letters)



>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 209

 Score = 25.7 bits (56), Expect = 1.1
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 18 KREHWILDRSISLLSIAHKS---LPNSKQAVEALFYTSRVWVVFIQD 61
           RE W+  R +  L++ ++        +Q  + LF  +   V F+ D
Sbjct: 28 DRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLD 74


>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
           factor large subunit DdrA {Klebsiella oxytoca [TaxId:
           571]}
          Length = 241

 Score = 25.5 bits (56), Expect = 1.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 57  VFIQDLVSEDNHLPQEVK 74
           +FIQDL++ D  +P  V 
Sbjct: 165 IFIQDLLAVDTSVPVSVT 182


>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 23.7 bits (51), Expect = 4.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 33 IAHKSLPNSKQAVEALFYTSRVWVVFIQDLVSEDNHLPQEVKLNLIS 79
          +  ++LPN + A +A          FI  + SE N +  + +   IS
Sbjct: 13 MIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,672
Number of extensions: 16162
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 10
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)