HHsearch alignment for GI: 254780523 and conserved domain: PRK06663
>PRK06663 flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=391.69 Aligned_cols=354 Identities=15% Similarity=0.133 Sum_probs=237.0
Q ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r 3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82 (357)
Q Consensus 3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~ 82 (357)
T Consensus 2 ~~RIst~~~~~~~~~~l~~~~~~l~~~qeqlSSGkrI~~~SDDP~~~a~~~~l~~~~~~~~Qy~~N~~~a~s~l~~~e~~ 81 (420)
T PRK06663 2 INRISHPMQYNNLKFSLREQESKITKLLNQLQTGKRIRKLRDDPTGATHSIRLDSRLFKLNTYEKNIDTGRSRLQYAEGY 81 (420)
T ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71406399999999999999999999999874248658933599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCC---
Q ss_conf 888999999999999851378889889999999998656777777652002-4304105665443212233333222---
Q gi|254780523|r 83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLA--- 158 (357)
Q Consensus 83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~-g~~~f~G~~~~~~p~~~~~~~~~~~--- 158 (357)
T Consensus 82 L~~~~~il~r~relavqaaNgt~s~~dR~aia~Ei~~l~~~l~~iaNt~~~~G~~lF~G~~~~~~pf~~~~~~~~~~~~~ 161 (420)
T PRK06663 82 LQSLGNILQRARELAVQGANGTYQGDDKKAIAKEIDELLEDLVAIANAKGADGYSLFSGTKIDREPFEPIESKIKGLQGD 161 (420)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999997426899867799999999999999999984055588464477137888764234443343332
Q ss_pred ------------CCCCCCHHHCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ------------222210001013454322245665321-------------1233322100123344444566543200
Q gi|254780523|r 159 ------------KKSFDQMLQGFLEENSKSLLAGQHLEV-------------SSMNAQQMTDFIKQLEDKFSDDEYWANN 213 (357)
Q Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (357)
T Consensus 162 ~~~~~~~~i~y~G~~~~~~~~i~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 241 (420)
T PRK06663 162 ELKNQIIGVEYNGNQGEQLTEIENGEYIPTNYPGNKVFWGQNQSITSSVDNSGFVVKEDTKIYIDGVEIHLTAGDTADDI 241 (420)
T ss_pred CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCEECCCCCCCEECCCCEEEECCEEEEECCCCCHHHH
T ss_conf 33553256785255430004403661563025752102225533000125654033146336631426751157518888
Q ss_pred EE--CCCCCCCEEECC-------CCCCEEEEEECCCCHHHHHHHH--------------------------HHHHCCCCC
Q ss_conf 11--156652000002-------5641022320353101123333--------------------------321002334
Q gi|254780523|r 214 WS--NASDHNIKYRIK-------DTEGIDVSANVNMRGIRDIMFV--------------------------AVIGTEFLS 258 (357)
Q Consensus 214 ~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 258 (357)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 320 (420)
T PRK06663 242 IAKINESSAPVKASLDPVLNSISISTTTPHQIWITDEEGSTVLRDLGLLTQNTKEPPYNLSNSAEVRGRSIFDVLIQLR- 320 (420)
T ss_pred HHHHCCCCCCEEEEEECCCCCEEEECCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 8751477752257630245541331156541355205664100012322345567764434333335523888899887-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 45551135667777789999999999999998668999999999989999999998643332788899999999999999
Q gi|254780523|r 259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~ 338 (357)
T Consensus 321 ~~~~~~~~~~~~~~~l~~ld~a~~~v~~~ra~iGar~nrle~~~~~~~~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~ 400 (420)
T PRK06663 321 DALIQNDQELIGGRDLAELDEALENILRRLADLGAKENRLERSYERISKEIMDMTEDMSKYTDLDVTKAITNLKMLELAH 400 (420)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 65532415656665899999999999999999879999999999988889999999886330523999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHCC
Q ss_conf 9999999997368505209
Q gi|254780523|r 339 EMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 339 qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 401 qAa~~~~a~i~~~SLfdyL 419 (420)
T PRK06663 401 QVSLGVSAKIMKTTLLDFL 419 (420)
T ss_pred HHHHHHHHHHCCCCHHHHC
T ss_conf 9999999987066288760