HHsearch alignment for GI: 254780523 and conserved domain: PRK06663

>PRK06663 flagellar hook-associated protein FlgL; Validated.
Probab=100.00  E-value=0  Score=391.69  Aligned_cols=354  Identities=15%  Similarity=0.133  Sum_probs=237.0

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
T Consensus         2 ~~RIst~~~~~~~~~~l~~~~~~l~~~qeqlSSGkrI~~~SDDP~~~a~~~~l~~~~~~~~Qy~~N~~~a~s~l~~~e~~   81 (420)
T PRK06663          2 INRISHPMQYNNLKFSLREQESKITKLLNQLQTGKRIRKLRDDPTGATHSIRLDSRLFKLNTYEKNIDTGRSRLQYAEGY   81 (420)
T ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             71406399999999999999999999999874248658933599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCC---
Q ss_conf             888999999999999851378889889999999998656777777652002-4304105665443212233333222---
Q gi|254780523|r   83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLA---  158 (357)
Q Consensus        83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~-g~~~f~G~~~~~~p~~~~~~~~~~~---  158 (357)
T Consensus        82 L~~~~~il~r~relavqaaNgt~s~~dR~aia~Ei~~l~~~l~~iaNt~~~~G~~lF~G~~~~~~pf~~~~~~~~~~~~~  161 (420)
T PRK06663         82 LQSLGNILQRARELAVQGANGTYQGDDKKAIAKEIDELLEDLVAIANAKGADGYSLFSGTKIDREPFEPIESKIKGLQGD  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999997426899867799999999999999999984055588464477137888764234443343332


Q ss_pred             ------------CCCCCCHHHCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             ------------222210001013454322245665321-------------1233322100123344444566543200
Q gi|254780523|r  159 ------------KKSFDQMLQGFLEENSKSLLAGQHLEV-------------SSMNAQQMTDFIKQLEDKFSDDEYWANN  213 (357)
Q Consensus       159 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (357)
T Consensus       162 ~~~~~~~~i~y~G~~~~~~~~i~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  241 (420)
T PRK06663        162 ELKNQIIGVEYNGNQGEQLTEIENGEYIPTNYPGNKVFWGQNQSITSSVDNSGFVVKEDTKIYIDGVEIHLTAGDTADDI  241 (420)
T ss_pred             CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCEECCCCCCCEECCCCEEEECCEEEEECCCCCHHHH
T ss_conf             33553256785255430004403661563025752102225533000125654033146336631426751157518888


Q ss_pred             EE--CCCCCCCEEECC-------CCCCEEEEEECCCCHHHHHHHH--------------------------HHHHCCCCC
Q ss_conf             11--156652000002-------5641022320353101123333--------------------------321002334
Q gi|254780523|r  214 WS--NASDHNIKYRIK-------DTEGIDVSANVNMRGIRDIMFV--------------------------AVIGTEFLS  258 (357)
Q Consensus       214 ~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~  258 (357)
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-  320 (420)
T PRK06663        242 IAKINESSAPVKASLDPVLNSISISTTTPHQIWITDEEGSTVLRDLGLLTQNTKEPPYNLSNSAEVRGRSIFDVLIQLR-  320 (420)
T ss_pred             HHHHCCCCCCEEEEEECCCCCEEEECCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf             8751477752257630245541331156541355205664100012322345567764434333335523888899887-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             45551135667777789999999999999998668999999999989999999998643332788899999999999999
Q gi|254780523|r  259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI  338 (357)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~  338 (357)
T Consensus       321 ~~~~~~~~~~~~~~~l~~ld~a~~~v~~~ra~iGar~nrle~~~~~~~~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~  400 (420)
T PRK06663        321 DALIQNDQELIGGRDLAELDEALENILRRLADLGAKENRLERSYERISKEIMDMTEDMSKYTDLDVTKAITNLKMLELAH  400 (420)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             65532415656665899999999999999999879999999999988889999999886330523999999999999999


Q ss_pred             HHHHHHHHHHHCCCHHHCC
Q ss_conf             9999999997368505209
Q gi|254780523|r  339 EMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       339 qas~~~~a~i~~~SL~dyL  357 (357)
T Consensus       401 qAa~~~~a~i~~~SLfdyL  419 (420)
T PRK06663        401 QVSLGVSAKIMKTTLLDFL  419 (420)
T ss_pred             HHHHHHHHHHCCCCHHHHC
T ss_conf             9999999987066288760