HHsearch alignment for GI: 254780523 and conserved domain: PRK08073
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated.
Probab=100.00 E-value=0 Score=377.18 Aligned_cols=287 Identities=15% Similarity=0.205 Sum_probs=240.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 MRItt~~~~~~~l~~l~~~~~~l~~~q~qissGkki~~~sDDP~~~~~~~~l~~~~~~~~qy~~N~~~a~~~l~~~e~aL 80 (287)
T PRK08073 1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLTQTENTL 80 (287)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90662999999999999999999999999853886798000899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999999999999851378889889999999998656777777652002430410566544321223333322222221
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD 163 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~ 163 (357)
T Consensus 81 ~~~~~~l~r~~el~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~G~ylF~G~~~~~~pf~~d~ty---~G---- 153 (287)
T PRK08073 81 SGVSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEQGRYIFGGDSAEKKPFTEDGTY---QG---- 153 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC---CC----
T ss_conf 99999999999999987168999999999999999999999998527547831006865677860145554---37----
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHH
Q ss_conf 00010134543222456653211233322100123344444566543200111566520000025641022320353101
Q gi|254780523|r 164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI 243 (357)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (357)
T Consensus 154 ------------------------------------------------------~~~~~~~~i~~~~~v~~~~~g~~~-~ 178 (287)
T PRK08073 154 ------------------------------------------------------GTNDVNWRLNDGYEVKAFRNGEAL-L 178 (287)
T ss_pred ------------------------------------------------------CCCCEEEECCCCEEEEEECCCHHH-H
T ss_conf ------------------------------------------------------776603541676257730362167-6
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12333332100233445551135667777789999999999999998668999999999989999999998643332788
Q gi|254780523|r 244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE 323 (357)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD 323 (357)
T Consensus 179 ~~~~~~l~~l~~al-----~~~d~~~~~~~l~~~~~~~d~v~~~~a~vGar~nrle~~~~~~~~~~~~l~~~~S~ieD~D 253 (287)
T PRK08073 179 TPVIKTLKKMSDAM-----QKGDQKALQPLLEENKKNLDGIINRTTEVGSTMNTVETFKTILSEQNLALQENRKEIEDVD 253 (287)
T ss_pred HHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78999999999987-----5777878999999999999999999999989999999999888889999999887755546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 8999999999999999999999997368505209
Q gi|254780523|r 324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL 357 (357)
Q Consensus 324 ~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL 357 (357)
T Consensus 254 ~Aeai~~l~~~~~~lqAal~~~aki~q~SL~dyl 287 (287)
T PRK08073 254 LAVAISDLAYINATYEATLKAVSTMSKTSILDYM 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 9999999999999999999999987055176219