HHsearch alignment for GI: 254780523 and conserved domain: PRK08869
>PRK08869 flagellin; Reviewed.
Probab=100.00 E-value=0 Score=313.60 Aligned_cols=347 Identities=10% Similarity=0.004 Sum_probs=225.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 3 ~~IntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL 82 (377)
T PRK08869 3 VNVNTNVSAMTAQRNLNGATSALNQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAM 82 (377)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57826199999999999999999999998611066478201689999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 83 ~~i~~iL~RmrELavqaaNgt~s~~DR~ai~~Ei~~L~~ei~~ian~t~fnG~~Ll~G~~~~~-~~q~g~~~g~~~~~~~ 161 (377)
T PRK08869 83 NETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTK-SFQIGANSGEAVSLDL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-EEECCCCCCCEEEEEE
T ss_conf 999999999999999763465555579999999999999999999865548877424777660-2621467884599850
Q ss_pred CCH-HHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC---------CCCCCCCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 100-0101345432224566532112--3332210012334---------444456654320011156652000002564
Q gi|254780523|r 163 DQM-LQGFLEENSKSLLAGQHLEVSS--MNAQQMTDFIKQL---------EDKFSDDEYWANNWSNASDHNIKYRIKDTE 230 (357)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (357)
T Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (377)
T PRK08869 162 SNMRSDAKIMGGASYVAEEGKDKDWTVSGDNSGLTLSFTDKGGEAQSININAKAGDDIEELATYINGQTDAVGASVTEDG 241 (377)
T ss_pred CCCCHHHHCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 43201121367514522554455420014665326874036665225787325551378888875155543135641575
Q ss_pred CEEEEEECCCCHHHHH-----HHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1022320353101123-----333321-0023344555113566777778999999999999999866899999999998
Q gi|254780523|r 231 GIDVSANVNMRGIRDI-----MFVAVI-GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF 304 (357)
Q Consensus 231 ~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~ 304 (357)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tt~~~a~~ai~~iD~Ai~~v~~~ra~lGA~~NrLe~~~~~ 321 (377)
T PRK08869 242 KLQLFAANSSATGDLSFSGALAAELGLGNKGPVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 321 (377)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16886125544443000310222211244431112210012253399999999999999999999872899999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999986433327888999999999999999999999997368
Q gi|254780523|r 305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 305 l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 322 l~~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~ 368 (377)
T PRK08869 322 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQA 368 (377)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999987423351319999999999999999999999997317