HHsearch alignment for GI: 254780523 and conserved domain: PRK12584
>PRK12584 flagellin A; Reviewed.
Probab=100.00 E-value=0 Score=282.61 Aligned_cols=347 Identities=8% Similarity=-0.001 Sum_probs=221.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 3 ~~INtNi~Alna~~~L~~~~~~ls~sleRLSSGlRIN~AaDDAAGlaIserm~sQI~gL~qA~rNa~DgiSliQTAEGAL 82 (510)
T PRK12584 3 FQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAM 82 (510)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37965599999999999989999999987533266466430666889999999999889999884887999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 83 ~ev~~iLqRmRELAVQAAN~tns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LLdGs~~~~~~qv-Ga~~~~~i~~~i 161 (510)
T PRK12584 83 DEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQV-GAYSNQSIKASI 161 (510)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECCCCCCCCCEEEE-CCCCCCEEEEEC
T ss_conf 9999999999999998603889888999999999999999856623165788862267778730775-578885588743
Q ss_pred CC-------------------------HHHCCCCCCCCC-------C----------------CCCCCCCC--CC-----
Q ss_conf 10-------------------------001013454322-------2----------------45665321--12-----
Q gi|254780523|r 163 DQ-------------------------MLQGFLEENSKS-------L----------------LAGQHLEV--SS----- 187 (357)
Q Consensus 163 ~~-------------------------~~~~~~~~~~~~-------~----------------~~~~~~~~--~~----- 187 (357)
T Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dg~~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 241 (510)
T PRK12584 162 GSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSD 241 (510)
T ss_pred CCCCCCCCCCEEEECCCEEECCCCEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECC
T ss_conf 54545444423430253121144035554213564420120046640467513678876513454433045677774022
Q ss_pred ---CC---------CCCCCCC---CCC-C-------CCCCCCCCCCC--------CEEECCCCCCCEEEC----------
Q ss_conf ---33---------3221001---233-4-------44445665432--------001115665200000----------
Q gi|254780523|r 188 ---MN---------AQQMTDF---IKQ-L-------EDKFSDDEYWA--------NNWSNASDHNIKYRI---------- 226 (357)
Q Consensus 188 ---~~---------~~~~~~~---~~~-~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~~---------- 226 (357)
T Consensus 242 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tg~~a~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~ 321 (510)
T PRK12584 242 VAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSTDGRGIEIKTDSVSNGPSAL 321 (510)
T ss_pred CEECCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEE
T ss_conf 10013531023203413310111013565146776531223454316885156716776315752487512444564215
Q ss_pred ---CCCCCEE-------------------EEEECCCCH--------H--HHHHHHH----------------HHHC----
Q ss_conf ---2564102-------------------232035310--------1--1233333----------------2100----
Q gi|254780523|r 227 ---KDTEGID-------------------VSANVNMRG--------I--RDIMFVA----------------VIGT---- 254 (357)
Q Consensus 227 ---~~~~~~~-------------------~~~~~~~~~--------~--~~~~~~~----------------~~~~---- 254 (357)
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (510)
T PRK12584 322 TMVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNA 401 (510)
T ss_pred EEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCC
T ss_conf 77415410023433323036653145321344214444332032025654202344311223554343201102555321
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf ---23344555113566777778999999999999999866899999999998999999999864333278889999999
Q gi|254780523|r 255 ---EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL 331 (357)
Q Consensus 255 ---~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l 331 (357)
T Consensus 402 ~~~~~~~~~~~~v~t~~~A~~ai~~iD~AI~~V~~~Ra~LGA~QNRLe~ti~NL~~~~eNltaA~SrI~DaD~A~Ema~~ 481 (510)
T PRK12584 402 VIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANF 481 (510)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00135542355543377799999999999999999997664899989999988999999999998889853089999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999997368
Q gi|254780523|r 332 STLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 332 ~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 482 tk~qIL~QAgtamLAQANq~ 501 (510)
T PRK12584 482 NKNNILAQSGSYAMSQANTV 501 (510)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999986176