HHsearch alignment for GI: 254780523 and conserved domain: PRK12717

>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional.
Probab=100.00  E-value=0  Score=391.47  Aligned_cols=354  Identities=15%  Similarity=0.148  Sum_probs=239.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
T Consensus         1 MRIs~~~~~~~~~~nl~~~~~~l~~~~eqLSSGkrIn~asDDpag~a~~~~l~~~i~~l~Q~~~N~~~a~s~lq~aE~aL   80 (523)
T PRK12717          1 MRISTAQFYESSAANYQRNYSNLVKTQEEISSGIRINTAADDPVGAARLLQLEQQQAMLDQYKGNITTIKNSLGQEETTL   80 (523)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91636999999999999999999999998732686688113999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf             8899999999999985137888988999999999865677777765200-243041056654432122333332222-22
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAK-KS  161 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~-~~  161 (357)
T Consensus        81 ~~v~~iLqr~reLavQaaNgt~s~~DR~ai~~Ei~ql~~el~~iaNtt~~nG~~lf~G~~~~~~pf~~~~~g~~~y~gd~  160 (523)
T PRK12717         81 NSINDVLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSRDANGQYLFAGSKSDTPPYVRNADGTYSYQGDQ  160 (523)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCCEEEECCC
T ss_conf             99999999999999987168999889999999999999999988604555762674576667664044588738985465


Q ss_pred             CCCHHHC------CCCCCCCCCC--------------------------C-------------------------CCCCC
Q ss_conf             2100010------1345432224--------------------------5-------------------------66532
Q gi|254780523|r  162 FDQMLQG------FLEENSKSLL--------------------------A-------------------------GQHLE  184 (357)
Q Consensus       162 ~~~~~~~------~~~~~~~~~~--------------------------~-------------------------~~~~~  184 (357)
T Consensus       161 ~~~~~~i~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (523)
T PRK12717        161 TQLNLQVGDGLNLATNDTGYSAFEQAVNTSRTQSTLLSPATDDGRVGLSNGLVTSSTTYNAQFRAGEPYTLTFTSGTQFK  240 (523)
T ss_pred             CCEEEEECCCEEEECCCCCHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf             52578740542331267406555420244432000123345665156403410133211244346752145530453147


Q ss_pred             CCCCCCCCCC-------CCCCCCCC----------------------CCCCCCCCCCEEECCC-----------------
Q ss_conf             1123332210-------01233444----------------------4456654320011156-----------------
Q gi|254780523|r  185 VSSMNAQQMT-------DFIKQLED----------------------KFSDDEYWANNWSNAS-----------------  218 (357)
Q Consensus       185 ~~~~~~~~~~-------~~~~~~~~----------------------~~~~~~~~~~~~~~~~-----------------  218 (357)
T Consensus       241 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (523)
T PRK12717        241 ITDASGNDVTSEASGGGKFDPGTFGGQTISFRGVDLELNVNLKEGDDALPDAALAGHSFTLQSKPDTFTATRSPGNTSTA  320 (523)
T ss_pred             EECCCCCEEEEEECCCCEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCEE
T ss_conf             52156641234303552231135666247640312454201235665554322245203421455402331036775314


Q ss_pred             ---CCCCEE-------ECCCCCCE-------------------------------------EEEEECCCCH---------
Q ss_conf             ---652000-------00256410-------------------------------------2232035310---------
Q gi|254780523|r  219 ---DHNIKY-------RIKDTEGI-------------------------------------DVSANVNMRG---------  242 (357)
Q Consensus       219 ---~~~~~~-------~~~~~~~~-------------------------------------~~~~~~~~~~---------  242 (357)
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~g~~~~i~~~~~~g~~~~~~~~  400 (523)
T PRK12717        321 QVSGGSITDQAAYNSTFPSGGAVLKFTSATDYELYAQPVTADSKPVSSGTVTGNTATAAGVSFTLSGTPAAGDQFSVQVN  400 (523)
T ss_pred             EECCCCEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEEEEECC
T ss_conf             64165200111123322578706872256642000033456653323452024411312237885256677864788227


Q ss_pred             ---HHHHHHHHHHHCC-C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---1123333321002-3----3445551135667777789999999999999998668999999999989999999998
Q gi|254780523|r  243 ---IRDIMFVAVIGTE-F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT  314 (357)
Q Consensus       243 ---~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~  314 (357)
T Consensus       401 ~~~~~~i~~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~lGA~~Nrle~~~~~~~~~~~n~~~  480 (523)
T PRK12717        401 THQTQNILDTISQLRAALSTPTDGDPAASQALRAALASALGNLASAIDQVSTARSSIGARGNALDIQGTTNESLSLANTS  480 (523)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65553188899999998516666653677889999999999999999999999998858999999999989999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             6433327888999999999999999999999997368505209
Q gi|254780523|r  315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       315 ~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
T Consensus       481 a~S~i~D~D~Ae~~t~lt~~qil~qAa~s~~aqi~qlSLfdyl  523 (523)
T PRK12717        481 TQSSIRDSDPAEATTRLTLQQTMLEASQQAFVKISQLSLFNQL  523 (523)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf             8887653039999999999999999999999998574186319