HHsearch alignment for GI: 254780523 and conserved domain: PRK12802
>PRK12802 flagellin; Provisional.
Probab=100.00 E-value=0 Score=299.19 Aligned_cols=271 Identities=14% Similarity=0.065 Sum_probs=220.3
Q ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r 3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH 82 (357)
Q Consensus 3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~ 82 (357)
T Consensus 2 ~m~I~tN~~a~~a~~~L~~~~~~l~~s~~rlSSGkri~~~sDDpa~~a~a~~l~s~~~~~~q~~~N~~~a~s~l~~ad~a 81 (282)
T PRK12802 2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA 81 (282)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71783769999999999999999999999872205516764449999999999999998999998899999899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888999999999999851378889889999999998656777777652-0024304105665443212233333222222
Q gi|254780523|r 83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKS 161 (357)
Q Consensus 83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~ 161 (357)
T Consensus 82 L~~i~~~l~R~reLavqaan~t~s~~dr~ai~~Ei~~L~~qi~~ian~t~fnG~~lf~g~~~~~~-~~vg~~~~~~~--- 157 (282)
T PRK12802 82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMT-FQVGANTGQSN--- 157 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE-EEECCCCCCEE---
T ss_conf 99999999999999997623789999999999999999999999987462788530058887557-87647888604---
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf 21000101345432224566532112333221001233444445665432001115665200000256410223203531
Q gi|254780523|r 162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR 241 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (357)
T Consensus 158 ------------------------------~~~~~~~~~~~---------------------------------~~~~~~ 174 (282)
T PRK12802 158 ------------------------------QITFGLSASFD---------------------------------ATGLGV 174 (282)
T ss_pred ------------------------------EEEEEECCCCC---------------------------------CCCCCC
T ss_conf ------------------------------78752012235---------------------------------434243
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01123333321002334455511356677777899999999999999986689999999999899999999986433327
Q gi|254780523|r 242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG 321 (357)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d 321 (357)
T Consensus 175 ~-----------~~~~~~~~~~~~~~~~~~~~l~~id~ai~~v~~~ra~~Ga~~nrle~~~~~l~~~~~nl~~~~s~i~D 243 (282)
T PRK12802 175 G-----------SGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQD 243 (282)
T ss_pred C-----------HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2-----------02331244221105469999999999999999999987499889999998899999999998766660
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 888999999999999999999999997368
Q gi|254780523|r 322 VEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 322 aD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 244 aD~A~e~~~l~~~qi~~Qaa~a~laqANq~ 273 (282)
T PRK12802 244 TDFAAETAQLTKQQTLQQASTSVLAQANQL 273 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 059999999999999999999999999676