HHsearch alignment for GI: 254780523 and conserved domain: PRK12803

>PRK12803 flagellin; Provisional.
Probab=100.00  E-value=0  Score=309.06  Aligned_cols=325  Identities=10%  Similarity=0.006  Sum_probs=222.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
T Consensus         1 ~~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal   80 (335)
T PRK12803          1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL   80 (335)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96726799999999999999999999998510066477421588999999999999989999853988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765-200243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN-~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
T Consensus        81 ~ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~~~~~~  160 (335)
T PRK12803         81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINT  160 (335)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             99999999999999985367899899999999999999999999984836886144676533231117650654223565


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
T Consensus       161 ~~~~~~~----------~~~~t~~~~~g~~~~~~~~~----~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  225 (335)
T PRK12803        161 PASLSGS----------QASWTLRVHVGANQDEAIAV----NIYAANVA-NLFSGEGAQQAAPVQEGAQQEGAQAAPAPA  225 (335)
T ss_pred             CCCCCCC----------CCCEEEEEEECCCCCCEEEE----EEEECHHH-HHHCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             2211355----------55236899863777633788----53200366-654145520111110011001100012200


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
T Consensus       226 -------~~~~-~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~~~Nl~aa~SrI~Da  297 (335)
T PRK12803        226 -------AAPA-QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDA  297 (335)
T ss_pred             -------CCCC-CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             -------0001-35654543000086599999999999999999999870899999999989999999999975315630


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999999999999997368
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
T Consensus       298 D~A~E~~~ltk~qil~Qa~~amLaQAN~~  326 (335)
T PRK12803        298 TMTDEVVASTTNSILTQSAMAMIAQANQV  326 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             59999999999999999999999997617