HHsearch alignment for GI: 254780523 and conserved domain: PRK12805
>PRK12805 flagellin; Provisional.
Probab=100.00 E-value=0 Score=295.68 Aligned_cols=276 Identities=12% Similarity=0.104 Sum_probs=217.6
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 1 mrIntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~s~~~~~~q~~~N~~da~s~lqtad~aL 80 (287)
T PRK12805 1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80 (287)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95545499999999999999999999998602355167431699999999999999989999988999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 81 ~~i~~iL~RmreLavqaangt~s~~dr~~i~~Ei~~L~~~i~~ia~~t~fng~~ll~~~~~~~~~~~~~~~~~~~~~~-- 158 (287)
T PRK12805 81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDL-- 158 (287)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEECCCCCCE--
T ss_conf 998999999999999755788887889999999999999999998735678852557777777424787514776623--
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf 10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r 163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (357)
T Consensus 159 -------------~~~-----~~~--~~~~~~-----------~---~~~~~~~--~----------------------- 179 (287)
T PRK12805 159 -------------INI-----DLF--NAKGLS-----------A---GTITLGS--G----------------------- 179 (287)
T ss_pred -------------EEE-----ECC--CCCCCC-----------C---CCCCCCC--C-----------------------
T ss_conf -------------676-----402--223444-----------2---2200255--4-----------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r 243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV 322 (357)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da 322 (357)
T Consensus 180 -----------~~~~~~~~~~~~~~~~a~~a~~~id~ai~~v~~~ra~lGA~~NrLe~~~~~l~~~~~nl~~~~S~i~Da 248 (287)
T PRK12805 180 -----------STVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDA 248 (287)
T ss_pred -----------CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----------200010000012477899999999999999999999999999999999999999999999987537722
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88999999999999999999999997368
Q gi|254780523|r 323 EQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 249 D~A~e~~~l~k~qil~Qaa~amlaQAN~~ 277 (287)
T PRK12805 249 DMAAEMSEMTKYKILTQTSISMLSQANQT 277 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 19999999999999999999999998327