HHsearch alignment for GI: 254780523 and conserved domain: PRK12806
>PRK12806 flagellin; Provisional.
Probab=100.00 E-value=0 Score=284.46 Aligned_cols=348 Identities=10% Similarity=0.031 Sum_probs=223.4
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
T Consensus 3 l~IntN~~Al~a~~~L~~~~~~l~~s~erLSSG~rIN~AaDDaAGlaIs~~m~aqi~gl~qa~~N~~dgiSl~qtAegAL 82 (475)
T PRK12806 3 QVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAM 82 (475)
T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 18966599999999999999999999997430276256530378999999999999889999998998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899999999999985137888988999999999865677777765-200243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN-~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
T Consensus 83 ~ev~~iLqRmReLAvQAaNgTn~~~DR~aiq~Ei~qL~~eIdrIa~~T~fNg~~LLdGs~~~~~~qvG~~~~~~i~~~~~ 162 (475)
T PRK12806 83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIG 162 (475)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEEEECCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 99999999999999986168887788999999999999999878652626888741367777216753788856899614
Q ss_pred C--------------CHHHCCCCCCCC--------CCCCCCCC-----------------------------CCCCCCCC
Q ss_conf 1--------------000101345432--------22456653-----------------------------21123332
Q gi|254780523|r 163 D--------------QMLQGFLEENSK--------SLLAGQHL-----------------------------EVSSMNAQ 191 (357)
Q Consensus 163 ~--------------~~~~~~~~~~~~--------~~~~~~~~-----------------------------~~~~~~~~ 191 (357)
T Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (475)
T PRK12806 163 SIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTSGT 242 (475)
T ss_pred CCCCCCCCCEEEECCCEECCCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 43112225501102311024432014675046531110233302310245430134433211023454533565303442
Q ss_pred CCCCCCCC----CCCCCCCC------------------------CCCC-CEEECCCCCCCEEECCCCCCEEEEEECC---
Q ss_conf 21001233----44444566------------------------5432-0011156652000002564102232035---
Q gi|254780523|r 192 QMTDFIKQ----LEDKFSDD------------------------EYWA-NNWSNASDHNIKYRIKDTEGIDVSANVN--- 239 (357)
Q Consensus 192 ~~~~~~~~----~~~~~~~~------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 239 (357)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~i~~~~~~t~~~ 322 (475)
T PRK12806 243 QAVGAIGGTAGDTYNLTINGVAIYTNLNVATALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTESGTGFT 322 (475)
T ss_pred EEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 13210234556521333124024411320002342268887521233341488713660689840564158850354200
Q ss_pred ---------CCHH-------------HHHHHHHH---------HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------3101-------------12333332---------1002334455511356677777899999999999999
Q gi|254780523|r 240 ---------MRGI-------------RDIMFVAV---------IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR 288 (357)
Q Consensus 240 ---------~~~~-------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~ 288 (357)
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~g~~~idv~t~~~A~~Ai~~ID~AI~~V~~~R 402 (475)
T PRK12806 323 AGTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNSNR 402 (475)
T ss_pred CCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24543132045434411330111122101015401001222334444445333445437779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r 289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357)
Q Consensus 289 a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357)
T Consensus 403 a~lGA~qNRLe~~i~nL~~~~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~ 465 (475)
T PRK12806 403 ANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSL 465 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 987089999999999999999999997546450229999999999999999999999996507