Query         gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 357
No_of_seqs    142 out of 3151
Neff          10.7
Searched_HMMs 39220
Date          Sun May 29 23:19:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780523.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK08870 flgL flagellar hook-a 100.0       0       0  398.2  34.9  353    4-357     1-403 (403)
  2 PRK12717 flgL flagellar hook-a 100.0       0       0  391.5  34.7  354    4-357     1-523 (523)
  3 PRK06663 flagellar hook-associ 100.0       0       0  391.7  32.0  354    3-357     2-419 (420)
  4 PRK07192 flgL flagellar hook-a 100.0       0       0  385.2  33.1  297    4-357     1-305 (305)
  5 PRK12718 flgL flagellar hook-a 100.0       0       0  381.3  35.0  354    4-357     1-509 (510)
  6 PRK07701 flgL flagellar hook-a 100.0       0       0  381.0  31.5  294    4-357     1-300 (301)
  7 PRK08073 flgL flagellar hook-a 100.0       0       0  377.2  33.0  287    4-357     1-287 (287)
  8 PRK08027 flgL flagellar hook-a 100.0       0       0  375.3  33.9  314    4-357     1-316 (317)
  9 PRK08913 flgL flagellar hook-a 100.0       0       0  374.9  34.3  301    3-357     2-302 (302)
 10 PRK06008 flgL flagellar hook-a 100.0       0       0  366.8  33.8  348    1-357     1-348 (348)
 11 pfam07164 consensus            100.0       0       0  353.2  33.1  347    1-357     1-347 (347)
 12 COG1344 FlgL Flagellin and rel 100.0       0       0  333.4  33.7  345    4-357     1-357 (360)
 13 PRK06819 flagellin; Validated  100.0       0       0  315.1  33.1  347    3-351     1-362 (371)
 14 PRK08869 flagellin; Reviewed   100.0       0       0  313.6  31.6  347    4-351     3-368 (377)
 15 PRK12804 flagellin; Provisiona 100.0       0       0  312.5  30.2  290    4-351     1-298 (307)
 16 PRK12803 flagellin; Provisiona 100.0       0       0  309.1  30.1  325    4-351     1-326 (335)
 17 PRK12807 flagellin; Provisiona 100.0       0       0  307.2  30.2  277    4-351     1-278 (287)
 18 PRK12802 flagellin; Provisiona 100.0       0       0  299.2  30.2  271    3-351     2-273 (282)
 19 PRK12805 flagellin; Provisiona 100.0       0       0  295.7  30.6  276    4-351     1-277 (287)
 20 PRK12808 flagellin; Provisiona 100.0       0       0  292.9  32.5  348    4-351     1-451 (460)
 21 PRK08412 flgL flagellar hook-a 100.0       0       0  294.9  29.3  146    4-149     1-146 (777)
 22 PRK13588 flagellin B; Provisio 100.0       0       0  286.9  32.1  345    4-351     3-505 (514)
 23 PRK12806 flagellin; Provisiona 100.0       0       0  284.5  32.9  348    4-351     3-465 (475)
 24 PRK08026 flagellin; Validated  100.0       0       0  282.6  32.2  138    4-141     3-141 (566)
 25 PRK12584 flagellin A; Reviewed 100.0       0       0  282.6  31.9  347    4-351     3-501 (510)
 26 PRK08411 flagellin; Reviewed   100.0       0       0  277.9  32.0  141    4-144     3-144 (573)
 27 PRK13589 flagellin; Provisiona 100.0       0       0  275.8  32.0  141    4-144     3-144 (573)
 28 TIGR02550 flagell_flgL flagell 100.0   4E-43       0  257.2  26.8  349    5-357     1-393 (393)
 29 PRK12687 flagellin; Reviewed   100.0 3.4E-39 8.5E-44  235.4  29.1  297    3-351     1-302 (311)
 30 pfam00669 Flagellin_N Bacteria 100.0 2.1E-33 5.4E-38  203.1  17.6  138    6-143     1-139 (139)
 31 pfam00700 Flagellin_C Bacteria  99.8 2.1E-19 5.5E-24  125.2  10.4   84  274-357     1-84  (84)
 32 PRK12688 flagellin; Reviewed    98.5 1.9E-07   5E-12   58.7   4.3  102    5-106     3-104 (888)
 33 PRK07191 flgK flagellar hook-a  97.4  0.0064 1.6E-07   33.6  23.1   70  282-351   379-448 (456)
 34 PRK07521 flgK flagellar hook-a  97.2    0.01 2.6E-07   32.5  26.7   70  282-351   404-473 (482)
 35 PRK06799 flgK flagellar hook-a  97.0   0.018 4.6E-07   31.1  18.1   66  286-351   358-423 (431)
 36 PRK06665 flgK flagellar hook-a  96.6    0.03 7.7E-07   29.9   9.5   71  281-351   548-618 (628)
 37 PRK12714 flgK flagellar hook-a  96.6   0.035   9E-07   29.5   9.5   70  282-351   546-615 (624)
 38 PRK06945 flgK flagellar hook-a  96.5   0.043 1.1E-06   29.0   9.5   71  281-351   571-641 (649)
 39 PRK05683 flgK flagellar hook-a  96.4   0.048 1.2E-06   28.7   9.7   71  281-351   598-668 (676)
 40 PRK12715 flgK flagellar hook-a  96.2   0.061 1.6E-06   28.1   9.7   70  282-351   571-640 (649)
 41 PRK07739 flgK flagellar hook-a  96.1    0.07 1.8E-06   27.8  24.5   70  282-351   418-487 (500)
 42 PRK08871 flgK flagellar hook-a  96.0   0.079   2E-06   27.5   9.7   71  281-351   548-618 (626)
 43 TIGR02492 flgK_ends flagellar   95.9   0.083 2.1E-06   27.4  17.0   74  278-351   415-488 (495)
 44 PRK12688 flagellin; Reviewed    95.8   0.093 2.4E-06   27.1   9.1   84  264-347   792-875 (888)
 45 PRK08147 flgK flagellar hook-a  95.6    0.12   3E-06   26.6  28.3   72  280-351   468-539 (547)
 46 PRK08471 flgK flagellar hook-a  85.7     1.9 4.8E-05   19.8  27.3   70  281-350   533-602 (612)
 47 COG1256 FlgK Flagellar hook-as  83.3     2.5 6.2E-05   19.2  20.7   72  280-351   472-543 (552)
 48 pfam06429 DUF1078 Domain of un  75.5     4.3 0.00011   17.9   3.9   31  321-351     2-32  (39)
 49 PRK05681 flgC flagellar basal   63.0     8.4 0.00021   16.3   3.9   34  318-351    96-129 (139)
 50 pfam10498 IFT57 Intra-flagella  62.0     8.8 0.00022   16.2  12.4   50  291-341   239-288 (355)
 51 PRK12631 flgC flagellar basal   55.7      11 0.00029   15.5   3.9   35  317-351    95-129 (138)
 52 PRK12632 flgC flagellar basal   54.0      12 0.00031   15.4   3.9   33  319-351    88-120 (130)
 53 PRK12782 flgC flagellar basal   52.9      13 0.00032   15.3   3.9   36  316-351    93-128 (138)
 54 TIGR01395 FlgC flagellar basal  50.0      11 0.00028   15.6   2.0   37  317-353   104-140 (147)
 55 PRK12629 flgC flagellar basal   46.9      16  0.0004   14.7   3.9   36  316-351    91-126 (135)
 56 PRK06802 flgC flagellar basal   45.0      17 0.00043   14.6   3.9   33  318-350    98-130 (141)
 57 PRK12630 flgC flagellar basal   44.8      17 0.00044   14.5   3.9   35  317-351   100-134 (143)
 58 PRK12628 flgC flagellar basal   41.0      20  0.0005   14.2   3.9   34  318-351    98-131 (140)
 59 PRK06797 flgB flagellar basal   40.1      20 0.00052   14.1   3.8   26  322-347    99-124 (135)
 60 PRK06664 fliD flagellar hook-a  39.5      21 0.00053   14.1   5.6   46  276-321   606-651 (684)
 61 PRK06004 flgB flagellar basal   38.1      22 0.00056   13.9   4.2   26  322-347    89-114 (126)
 62 PRK06798 fliD flagellar cappin  35.8      24 0.00061   13.7   5.5   47  275-321   361-407 (440)
 63 PRK05682 flgE flagellar hook p  33.8      26 0.00066   13.5   2.0   27  320-346   375-401 (414)
 64 PRK05680 flgB flagellar basal   30.5      29 0.00075   13.2   4.2   25  322-346    99-123 (137)
 65 PRK12622 flgB flagellar basal   29.4      31 0.00079   13.1   4.3   27  321-347    99-125 (135)
 66 PRK12621 flgB flagellar basal   29.0      31  0.0008   13.1   4.2   26  322-347    97-122 (136)
 67 PRK12623 flgB flagellar basal   27.8      33 0.00084   13.0   4.3   25  322-346    96-120 (131)
 68 PRK12624 flgB flagellar basal   26.8      34 0.00088   12.9   4.2   25  322-346   106-130 (143)
 69 PRK13723 conjugal transfer pil  26.8      34 0.00088   12.9   7.4   16  275-290   373-388 (457)
 70 PRK06003 flgB flagellar basal   26.7      35 0.00088   12.8   3.9   28  322-349    90-117 (126)
 71 PRK12627 flgB flagellar basal   26.5      35 0.00089   12.8   4.2   15  327-341    96-110 (128)
 72 PRK08724 fliD flagellar cappin  26.4      35 0.00089   12.8   4.7   46  276-321   613-658 (686)
 73 PRK12685 flgB flagellar basal   25.5      36 0.00093   12.7   4.2   28  320-347    77-104 (116)
 74 PRK12625 flgB flagellar basal   23.9      39   0.001   12.5   4.1   25  322-346    95-119 (132)
 75 PRK12817 flgG flagellar basal   22.7      41  0.0011   12.4   3.8   32  319-350   220-251 (261)
 76 PRK08032 fliD flagellar cappin  21.3      44  0.0011   12.2   7.8   70  275-345   389-458 (463)
 77 PRK07182 flgB flagellar basal   20.5      46  0.0012   12.1   4.0   19  112-130    13-33  (148)
 78 PRK12641 flgF flagellar basal   20.2      47  0.0012   12.1   3.9   30  320-349   209-238 (252)

No 1  
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=398.15  Aligned_cols=353  Identities=13%  Similarity=0.167  Sum_probs=249.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||+++|++++++|++.+.+|.++|+||||||||++|||||++++++++|+.++.++++|++|+..+.+||+++|++|
T Consensus         1 MRIst~~~~~~~~~~l~~~~~~l~~~~eqlSTGkrI~~~sDDp~~~~~~~~l~~~~~~l~q~~~N~~~~~s~l~~ad~aL   80 (403)
T PRK08870          1 MRISTAQMYQQSVNSMLDQQAKLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQESALLDQYTKNINLARNRLQQEESTL   80 (403)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95656999999999999999999999999740686488213899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765200-243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||++++++||+++++||++++.|+.++++++++++|+++ .|+|+|+|.+.+++||.....+...+....
T Consensus        81 ~~~~~il~r~relavqaangt~~~~dr~ai~~E~~~l~~~i~~iaNt~~~~G~~lF~G~~~~t~pf~~~~~g~~~y~Gd~  160 (403)
T PRK08870         81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLSLANSKDESGNYLFAGTQSGTQPFAFDASGNVVYSGDS  160 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEECCCCCEEEECCC
T ss_conf             99999999999999986246787056999999999999999999840554661220466666640443488745860576


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCC------
Q ss_conf             100010134543222456653211----------------233322100-123344444566543200111566------
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVS----------------SMNAQQMTD-FIKQLEDKFSDDEYWANNWSNASD------  219 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------  219 (357)
                      ..... .............+...+                ......... ...........+..+...+....+      
T Consensus       161 ~~~~~-~v~~~~~v~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  239 (403)
T PRK08870        161 GQRQV-QVADSVTVATNDPGDEVFMSVPNGFGDYVPAAYAANTGSGLLVSVAKTTPSAPTNGDTYTITFGDTAGAPTYEV  239 (403)
T ss_pred             CCEEE-EECCCCEEEECCCHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf             52468-74155046504745777641346765201022234455532431010045555667634899831577513898


Q ss_pred             --------------------------CCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             --------------------------520000025641022320353101123333321002334455511356677777
Q gi|254780523|r  220 --------------------------HNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKM  273 (357)
Q Consensus       220 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (357)
                                                ..+......+..+...+......+..+.......................+..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  319 (403)
T PRK08870        240 TDSSTGTVVTAQAYDAGQPINFNGVEVQISGAPAAGDSFTLTPAAGVSIFDTLDDAIAALESPVDNSVSDAALQNELAQA  319 (403)
T ss_pred             ECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             50566531234444567612305548997035466642785147653199899999998636677643105568899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             89999999999999998668999999999989999999998643332788899999999999999999999999736850
Q gi|254780523|r  274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI  353 (357)
Q Consensus       274 ~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL  353 (357)
                      +..|+.++++|...|+++|++++|||...++++....++++.++++||+|++|++++|++.|++|||++++++||.+|||
T Consensus       320 l~~id~a~~~v~~~ra~lGa~~nrle~~~~~l~~~~~~l~~~~S~i~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~SL  399 (403)
T PRK08870        320 LTNLDNALNNVLTARASVGARLNELESYEAVHEDNKLVNTSALSSLEDLDYASAISEFEKQQAALQAAQQAFSKVQSLSL  399 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999999999999859999999999888889999999876512547999999999999999999999998834517


Q ss_pred             HHCC
Q ss_conf             5209
Q gi|254780523|r  354 LNYL  357 (357)
Q Consensus       354 ~dyL  357 (357)
                      ||||
T Consensus       400 ~dyL  403 (403)
T PRK08870        400 FNYI  403 (403)
T ss_pred             HHHC
T ss_conf             6209


No 2  
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=100.00  E-value=0  Score=391.47  Aligned_cols=354  Identities=15%  Similarity=0.148  Sum_probs=239.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||+++|++.+++|++.+++|.+.++||||||||++|+|||++++++.+|+.++..++||.+|+..+.+||+++|++|
T Consensus         1 MRIs~~~~~~~~~~nl~~~~~~l~~~~eqLSSGkrIn~asDDpag~a~~~~l~~~i~~l~Q~~~N~~~a~s~lq~aE~aL   80 (523)
T PRK12717          1 MRISTAQFYESSAANYQRNYSNLVKTQEEISSGIRINTAADDPVGAARLLQLEQQQAMLDQYKGNITTIKNSLGQEETTL   80 (523)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91636999999999999999999999998732686688113999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf             8899999999999985137888988999999999865677777765200-243041056654432122333332222-22
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAK-KS  161 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~-~~  161 (357)
                      .++.++|+|+||++||++||+++++||++|+.|+++++++|.+++|+++ +|+|+|+|.+.+.+||.....+...+. ..
T Consensus        81 ~~v~~iLqr~reLavQaaNgt~s~~DR~ai~~Ei~ql~~el~~iaNtt~~nG~~lf~G~~~~~~pf~~~~~g~~~y~gd~  160 (523)
T PRK12717         81 NSINDVLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSRDANGQYLFAGSKSDTPPYVRNADGTYSYQGDQ  160 (523)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCCCEEEECCC
T ss_conf             99999999999999987168999889999999999999999988604555762674576667664044588738985465


Q ss_pred             CCCHHHC------CCCCCCCCCC--------------------------C-------------------------CCCCC
Q ss_conf             2100010------1345432224--------------------------5-------------------------66532
Q gi|254780523|r  162 FDQMLQG------FLEENSKSLL--------------------------A-------------------------GQHLE  184 (357)
Q Consensus       162 ~~~~~~~------~~~~~~~~~~--------------------------~-------------------------~~~~~  184 (357)
                      .......      .........+                          .                         .....
T Consensus       161 ~~~~~~i~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (523)
T PRK12717        161 TQLNLQVGDGLNLATNDTGYSAFEQAVNTSRTQSTLLSPATDDGRVGLSNGLVTSSTTYNAQFRAGEPYTLTFTSGTQFK  240 (523)
T ss_pred             CCEEEEECCCEEEECCCCCHHHHHHCCCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
T ss_conf             52578740542331267406555420244432000123345665156403410133211244346752145530453147


Q ss_pred             CCCCCCCCCC-------CCCCCCCC----------------------CCCCCCCCCCEEECCC-----------------
Q ss_conf             1123332210-------01233444----------------------4456654320011156-----------------
Q gi|254780523|r  185 VSSMNAQQMT-------DFIKQLED----------------------KFSDDEYWANNWSNAS-----------------  218 (357)
Q Consensus       185 ~~~~~~~~~~-------~~~~~~~~----------------------~~~~~~~~~~~~~~~~-----------------  218 (357)
                      .....+....       .+......                      ...........+....                 
T Consensus       241 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (523)
T PRK12717        241 ITDASGNDVTSEASGGGKFDPGTFGGQTISFRGVDLELNVNLKEGDDALPDAALAGHSFTLQSKPDTFTATRSPGNTSTA  320 (523)
T ss_pred             EECCCCCEEEEEECCCCEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCEE
T ss_conf             52156641234303552231135666247640312454201235665554322245203421455402331036775314


Q ss_pred             ---CCCCEE-------ECCCCCCE-------------------------------------EEEEECCCCH---------
Q ss_conf             ---652000-------00256410-------------------------------------2232035310---------
Q gi|254780523|r  219 ---DHNIKY-------RIKDTEGI-------------------------------------DVSANVNMRG---------  242 (357)
Q Consensus       219 ---~~~~~~-------~~~~~~~~-------------------------------------~~~~~~~~~~---------  242 (357)
                         ...+..       ....+..+                                     ...+...+..         
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~g~~~~i~~~~~~g~~~~~~~~  400 (523)
T PRK12717        321 QVSGGSITDQAAYNSTFPSGGAVLKFTSATDYELYAQPVTADSKPVSSGTVTGNTATAAGVSFTLSGTPAAGDQFSVQVN  400 (523)
T ss_pred             EECCCCEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEEEEECC
T ss_conf             64165200111123322578706872256642000033456653323452024411312237885256677864788227


Q ss_pred             ---HHHHHHHHHHHCC-C----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---1123333321002-3----3445551135667777789999999999999998668999999999989999999998
Q gi|254780523|r  243 ---IRDIMFVAVIGTE-F----LSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDT  314 (357)
Q Consensus       243 ---~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~  314 (357)
                         ....+........ .    .............+..++..|+.++++|...|+++|+++||||...+.++...++++.
T Consensus       401 ~~~~~~i~~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~al~~id~a~~~v~~~ra~lGA~~Nrle~~~~~~~~~~~n~~~  480 (523)
T PRK12717        401 THQTQNILDTISQLRAALSTPTDGDPAASQALRAALASALGNLASAIDQVSTARSSIGARGNALDIQGTTNESLSLANTS  480 (523)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65553188899999998516666653677889999999999999999999999998858999999999989999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             6433327888999999999999999999999997368505209
Q gi|254780523|r  315 YISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       315 ~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      .+|+|||+||+|++++|++.|+.|||++++++|++||||||||
T Consensus       481 a~S~i~D~D~Ae~~t~lt~~qil~qAa~s~~aqi~qlSLfdyl  523 (523)
T PRK12717        481 TQSSIRDSDPAEATTRLTLQQTMLEASQQAFVKISQLSLFNQL  523 (523)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf             8887653039999999999999999999999998574186319


No 3  
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=391.69  Aligned_cols=354  Identities=15%  Similarity=0.133  Sum_probs=237.0

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
                      .+||||+++|++.+++|++.+++|.++|+||||||||++|||||++++++++|+.++..++||.+|+..+.+||+++|++
T Consensus         2 ~~RIst~~~~~~~~~~l~~~~~~l~~~qeqlSSGkrI~~~SDDP~~~a~~~~l~~~~~~~~Qy~~N~~~a~s~l~~~e~~   81 (420)
T PRK06663          2 INRISHPMQYNNLKFSLREQESKITKLLNQLQTGKRIRKLRDDPTGATHSIRLDSRLFKLNTYEKNIDTGRSRLQYAEGY   81 (420)
T ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             71406399999999999999999999999874248658933599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCC---
Q ss_conf             888999999999999851378889889999999998656777777652002-4304105665443212233333222---
Q gi|254780523|r   83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDE-GQYLFSGINSSEKPLNGYFTKDSLA---  158 (357)
Q Consensus        83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~-g~~~f~G~~~~~~p~~~~~~~~~~~---  158 (357)
                      |+++.++|+|+|+++++++||+++++||++|+.|+.+++++|++++|++++ |.|+|+|.+...+||..........   
T Consensus        82 L~~~~~il~r~relavqaaNgt~s~~dR~aia~Ei~~l~~~l~~iaNt~~~~G~~lF~G~~~~~~pf~~~~~~~~~~~~~  161 (420)
T PRK06663         82 LQSLGNILQRARELAVQGANGTYQGDDKKAIAKEIDELLEDLVAIANAKGADGYSLFSGTKIDREPFEPIESKIKGLQGD  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999997426899867799999999999999999984055588464477137888764234443343332


Q ss_pred             ------------CCCCCCHHHCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             ------------222210001013454322245665321-------------1233322100123344444566543200
Q gi|254780523|r  159 ------------KKSFDQMLQGFLEENSKSLLAGQHLEV-------------SSMNAQQMTDFIKQLEDKFSDDEYWANN  213 (357)
Q Consensus       159 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (357)
                                  +....................+.....             ...........+.........+......
T Consensus       162 ~~~~~~~~i~y~G~~~~~~~~i~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  241 (420)
T PRK06663        162 ELKNQIIGVEYNGNQGEQLTEIENGEYIPTNYPGNKVFWGQNQSITSSVDNSGFVVKEDTKIYIDGVEIHLTAGDTADDI  241 (420)
T ss_pred             CCCCCEEEEEECCCCCCCEEEECCCCEEEECCCCCCEEECCCCCCEECCCCCCCEECCCCEEEECCEEEEECCCCCHHHH
T ss_conf             33553256785255430004403661563025752102225533000125654033146336631426751157518888


Q ss_pred             EE--CCCCCCCEEECC-------CCCCEEEEEECCCCHHHHHHHH--------------------------HHHHCCCCC
Q ss_conf             11--156652000002-------5641022320353101123333--------------------------321002334
Q gi|254780523|r  214 WS--NASDHNIKYRIK-------DTEGIDVSANVNMRGIRDIMFV--------------------------AVIGTEFLS  258 (357)
Q Consensus       214 ~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~  258 (357)
                      ..  ......+.....       .....+......+.........                          ........ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-  320 (420)
T PRK06663        242 IAKINESSAPVKASLDPVLNSISISTTTPHQIWITDEEGSTVLRDLGLLTQNTKEPPYNLSNSAEVRGRSIFDVLIQLR-  320 (420)
T ss_pred             HHHHCCCCCCEEEEEECCCCCEEEECCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf             8751477752257630245541331156541355205664100012322345567764434333335523888899887-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             45551135667777789999999999999998668999999999989999999998643332788899999999999999
Q gi|254780523|r  259 KNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKI  338 (357)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~  338 (357)
                      ..............++..|+.+++++...|+++|+|++|++...++++....++++.+|++||+|++|++++|+++++.|
T Consensus       321 ~~~~~~~~~~~~~~~l~~ld~a~~~v~~~ra~iGar~nrle~~~~~~~~~~~~l~~~~S~i~DaD~a~~it~l~~~~~~~  400 (420)
T PRK06663        321 DALIQNDQELIGGRDLAELDEALENILRRLADLGAKENRLERSYERISKEIMDMTEDMSKYTDLDVTKAITNLKMLELAH  400 (420)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             65532415656665899999999999999999879999999999988889999999886330523999999999999999


Q ss_pred             HHHHHHHHHHHCCCHHHCC
Q ss_conf             9999999997368505209
Q gi|254780523|r  339 EMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       339 qas~~~~a~i~~~SL~dyL  357 (357)
                      ||++++|+||.++||||||
T Consensus       401 qAa~~~~a~i~~~SLfdyL  419 (420)
T PRK06663        401 QVSLGVSAKIMKTTLLDFL  419 (420)
T ss_pred             HHHHHHHHHHCCCCHHHHC
T ss_conf             9999999987066288760


No 4  
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=385.20  Aligned_cols=297  Identities=18%  Similarity=0.214  Sum_probs=244.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||+++|++++++|++.+.+|.++|+||||||||++|||||+++.++++|+.++.++++|.+|+..+.+||+++|++|
T Consensus         1 MRIst~~~~~~~l~~l~~~~~~l~~~q~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~d~aL   80 (305)
T PRK07192          1 MRISTNQLYSTMLRSIQQSQAGLMKLQQQMSTGKRILTPSDDPIASVRLLELNREQANIKQYRSNIANLSNSLSAQEGHL   80 (305)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95656999999999999999999999999833785389423899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765200-243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||+++++.||+++++||.+++.|+.++++++..++|+++ .|.|+|+|.+++.+||.....+....+...
T Consensus        81 ~~~~~il~r~rel~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~~G~ylF~G~~~~~~pf~~~~~~~~~~y~G~  160 (305)
T PRK07192         81 SGVNDQLQSVRDLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGRYLFSGTASNTQPITFDPAGGKYTYNGN  160 (305)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCEEEEECC
T ss_conf             99999999999999985068898267998888999989999999874142651353254356664133378870688448


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCC--
Q ss_conf             100010134543222456653211233322100123344444566543200111566520000025641022320353--
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM--  240 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  240 (357)
                      .                                                        ......+..+..+.....+..  
T Consensus       161 ~--------------------------------------------------------~~~~~~i~~~~~~~~~~~g~~~f  184 (305)
T PRK07192        161 S--------------------------------------------------------DQRQVQVGEGVQLPVNVTLQSVF  184 (305)
T ss_pred             C--------------------------------------------------------CCEEEEECCCEEEEECCCHHHHH
T ss_conf             7--------------------------------------------------------64478841670443045388875


Q ss_pred             -----CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----101123333321002334455511356677777899999999999999986689999999999899999999986
Q gi|254780523|r  241 -----RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY  315 (357)
Q Consensus       241 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~  315 (357)
                           ..+..+ .........+............+..+++.|+.++++|...|+++|++++|||...++++....++++.
T Consensus       185 ~~~~~~~f~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ld~a~~~v~~~~a~iGa~~nrle~~~~~~~~~~~~l~~~  263 (305)
T PRK07192        185 EGGGLDVLNAL-DKLIDDLKTPTLPAGDPALTAAIDEALGAIDNALDNVLGTLTEVGSRQKELDLLQKNHEDMKLQNAKI  263 (305)
T ss_pred             CCCCHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             25735689999-99998741666555433369999999999999999999999998599999999998899999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             433327888999999999999999999999997368505209
Q gi|254780523|r  316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       316 ~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      ++++||+|++|++++|++.|++|||++++|+||.+|||||||
T Consensus       264 ~s~i~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~lSL~dyl  305 (305)
T PRK07192        264 LSDLQDLDYAEAYTDLSNQMAALEATQKTFVKVNSLSLFNLI  305 (305)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf             877545579999999999999999999999988167387309


No 5  
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=100.00  E-value=0  Score=381.31  Aligned_cols=354  Identities=14%  Similarity=0.091  Sum_probs=243.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||.++|++.+++|.+.|++|.++|+||+|||||.+|||||+++++++.++..+..+++|.+|+..+++||...|++|
T Consensus         1 MRISt~~~~~~~~~~~~~~q~~l~~~q~qlssGkri~~psDDPvaa~~~~~l~~~~~~~~qy~~N~~~a~~~L~~~e~~L   80 (510)
T PRK12718          1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL   80 (510)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93536999999999999999999999999850786688210999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCC-CCC-CCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765200-2430410566544321223-333-322222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGY-FTK-DSLAKK  160 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~-~~~-~~~~~~  160 (357)
                      .++.++|+|+||++++|.||+++++||++|+.|+++++++|+.++|+++ .|.|+|+|.+++++||... ..+ ..+.+.
T Consensus        81 ~~v~~~l~~~~el~v~a~ngt~s~~dr~aia~El~~~~~~l~~laNs~d~~G~ylFaG~~~~t~Pf~~~~~~G~~~Y~Gd  160 (510)
T PRK12718         81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGD  160 (510)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEECCCCCEEEEECC
T ss_conf             99999999999999985178889788999999999999999999646587887744673578998313489851898257


Q ss_pred             CCCCHHHC------CCCCCCCCCCCC------------------CC---------CCCCCCCCCC---------------
Q ss_conf             22100010------134543222456------------------65---------3211233322---------------
Q gi|254780523|r  161 SFDQMLQG------FLEENSKSLLAG------------------QH---------LEVSSMNAQQ---------------  192 (357)
Q Consensus       161 ~~~~~~~~------~~~~~~~~~~~~------------------~~---------~~~~~~~~~~---------------  192 (357)
                      ........      .........+..                  .+         .......+..               
T Consensus       161 ~gq~~~qv~~~~~~~~~d~G~~vF~~v~~g~~~~~~~a~~~ntg~g~~s~vs~d~~~~~~~~g~~~~i~ft~~~~td~~~  240 (510)
T PRK12718        161 LGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQ  240 (510)
T ss_pred             CCCEEEEECCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf             76246873576366347776123102467874432466655667774321002564444446765310102233455422


Q ss_pred             --------------------------CCCC------CCC-----CCCCCCCCCCCCCEEE--------------------
Q ss_conf             --------------------------1001------233-----4444456654320011--------------------
Q gi|254780523|r  193 --------------------------MTDF------IKQ-----LEDKFSDDEYWANNWS--------------------  215 (357)
Q Consensus       193 --------------------------~~~~------~~~-----~~~~~~~~~~~~~~~~--------------------  215 (357)
                                                ...+      +..     .......+..|.....                    
T Consensus       241 ~~v~~~~~~~~~~~~~~~n~~~~~g~~i~~~gv~~~l~g~~~~gd~~t~~~~~~~~~~~~~~~~~t~s~~~t~~s~~d~~  320 (510)
T PRK12718        241 YSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGL  320 (510)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             20014665555444444556666663011145213421466667511102566443344556677664433444566665


Q ss_pred             ----------CCCCCCC---------------EEECCCCC-----CEEEEEECC------------CCHHHHHHHHHHHH
Q ss_conf             ----------1566520---------------00002564-----102232035------------31011233333210
Q gi|254780523|r  216 ----------NASDHNI---------------KYRIKDTE-----GIDVSANVN------------MRGIRDIMFVAVIG  253 (357)
Q Consensus       216 ----------~~~~~~~---------------~~~~~~~~-----~~~~~~~~~------------~~~~~~~~~~~~~~  253 (357)
                                .......               ......+.     .+.+.+...            ......++..+..+
T Consensus       321 ~~~~~~~~~~~~ga~g~~~~~t~~~~~~~~~~~~~~~~G~~i~~~Gv~~~i~G~Pa~GDsf~v~~~~~~~~~vf~Tl~~l  400 (510)
T PRK12718        321 TGKNLSVAFLDDGAGGLLYSVTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDL  400 (510)
T ss_pred             CCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             56653112114776631320234677766555555577760453444897446768886233227875545599999999


Q ss_pred             CCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             0233-----44555113566777778999999999999999866899999999998999999999864333278889999
Q gi|254780523|r  254 TEFL-----SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAH  328 (357)
Q Consensus       254 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~  328 (357)
                      ....     ..........+.+..+++.|+.++++|...|+++|+|+|+||...+.++...+.++..+|++||+||+|++
T Consensus       401 i~aL~tp~~~~~~~~~~~~~~l~~al~~ld~a~~~v~~~ra~vGaRlN~ld~~~~~~~~~~l~~~~~lS~leDlD~aeAi  480 (510)
T PRK12718        401 IGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNIYQAT  480 (510)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99984857798789999999999999989999999999999887888899999865476787999988750236899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             99999999999999999997368505209
Q gi|254780523|r  329 AQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       329 t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      ++|++.|+.|||++++|+||++|||||||
T Consensus       481 s~l~~qq~~LQAaQqsF~ki~~LSLFn~~  509 (510)
T PRK12718        481 SDLLLRQVALQAASLALQRIQGNSLFSMG  509 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999999999998656511146


No 6  
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=381.04  Aligned_cols=294  Identities=15%  Similarity=0.174  Sum_probs=240.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||+|+++|++++++|++.+.+|.++++||||||||++|||||++++++++|+.++.++++|.+|+..+.+||+++|++|
T Consensus         1 MRIst~~~~~~~~~~l~~~~~~l~~~~~qlsSGkri~~~sDDp~~~~~~~~l~~~~~~~~q~~~N~~~a~s~l~~~e~~L   80 (301)
T PRK07701          1 MRVTQGMIANNSLRNINKSLEKLDKYQEQLSTGKKITKPSDDPVVAMKSLRYRTDLAQVEQYQRNASDAKNWLENTESAL   80 (301)
T ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97164999999999999999999999998733685278010899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999999851378889889999999998656777777652002430410566544321223333322222221
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD  163 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~  163 (357)
                      .++.++|+|+||++++++||++++++|.+++.|+.++++++..++|++++|+|+|+|.+.+.+||.....+.........
T Consensus        81 ~~~~~~l~r~rel~vqa~ngt~s~~dr~~ia~E~~~l~~~l~~~aNt~~~G~ylF~G~~~~~~pf~~~~~~~~~~~~~~~  160 (301)
T PRK07701         81 NEATDILQRARELAVQAANGTNTEEDRQAIAQEIEQLKDQLIQIANTQVNGRYIFNGTNTDTPPVTENGDGTYTFENSTD  160 (301)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCEEEEECCC
T ss_conf             99999999999999986059998777999999999889999999705517813205755677640117876145663167


Q ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCC---
Q ss_conf             00010134543222456653211233322100123344444566543200111566520000025641022320353---
Q gi|254780523|r  164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM---  240 (357)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  240 (357)
                      .                                                       ......+.++..+...+.+..   
T Consensus       161 ~-------------------------------------------------------~~~~~~i~~g~~~~~n~~g~~~f~  185 (301)
T PRK07701        161 S-------------------------------------------------------SDVKIEISKGVKINVNVDGNSAFG  185 (301)
T ss_pred             C-------------------------------------------------------CEEEEEECCCCEEEECCCHHHHHC
T ss_conf             6-------------------------------------------------------306888427715773155487642


Q ss_pred             ---CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---10112333332100233445551135667777789999999999999998668999999999989999999998643
Q gi|254780523|r  241 ---RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS  317 (357)
Q Consensus       241 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s  317 (357)
                         ......+........     .........+..+++.|+.++++|...|+++|++++||+...++++...+++++.++
T Consensus       186 ~~~~~~~~i~~~l~~~~~-----~l~~~~~~~~~~~l~~id~a~~~v~~~ra~~Ga~~nrle~~~~~~~~~~~~l~~~~s  260 (301)
T PRK07701        186 GDSGGGQNLFEMLDNLEN-----ALESGTHTGVSNALGDIDQFINNVLAERAELGARSNRLELIENRLSDQEINATKLLS  260 (301)
T ss_pred             CCCCCCHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             435553049998999998-----742677889999999999999999999998618999999999889999999999988


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             3327888999999999999999999999997368505209
Q gi|254780523|r  318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      +++|+|+++++++|++.|++|||+++++++|.++||||||
T Consensus       261 ~i~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q~SL~dyl  300 (301)
T PRK07701        261 DNEDVDLAEVITDLKTQENVYRAALAVGARIIQPSLVDFL  300 (301)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_conf             7755459999999999999999999999988356098870


No 7  
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=377.18  Aligned_cols=287  Identities=15%  Similarity=0.205  Sum_probs=240.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||+++|++++++|+..+.+|.++|+||+|||||++|||||+++.++++++.+++++++|.+|+..+.+||+++|++|
T Consensus         1 MRItt~~~~~~~l~~l~~~~~~l~~~q~qissGkki~~~sDDP~~~~~~~~l~~~~~~~~qy~~N~~~a~~~l~~~e~aL   80 (287)
T PRK08073          1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLTQTENTL   80 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             90662999999999999999999999999853886798000899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999999851378889889999999998656777777652002430410566544321223333322222221
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFD  163 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~  163 (357)
                      +++.++|+|+||++++++||++++++|++++.|+++++++++.++|++++|+|+|+|.+.+.+||......   .+    
T Consensus        81 ~~~~~~l~r~~el~vqa~ngt~s~~dr~aia~Ei~~l~~~l~~~aNt~~~G~ylF~G~~~~~~pf~~d~ty---~G----  153 (287)
T PRK08073         81 SGVSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEQGRYIFGGDSAEKKPFTEDGTY---QG----  153 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCC---CC----
T ss_conf             99999999999999987168999999999999999999999998527547831006865677860145554---37----


Q ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHH
Q ss_conf             00010134543222456653211233322100123344444566543200111566520000025641022320353101
Q gi|254780523|r  164 QMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGI  243 (357)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
                                                                            ....+...+.++..+.....+... +
T Consensus       154 ------------------------------------------------------~~~~~~~~i~~~~~v~~~~~g~~~-~  178 (287)
T PRK08073        154 ------------------------------------------------------GTNDVNWRLNDGYEVKAFRNGEAL-L  178 (287)
T ss_pred             ------------------------------------------------------CCCCEEEECCCCEEEEEECCCHHH-H
T ss_conf             ------------------------------------------------------776603541676257730362167-6


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             12333332100233445551135667777789999999999999998668999999999989999999998643332788
Q gi|254780523|r  244 RDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVE  323 (357)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD  323 (357)
                      ..++..........     .....+.+...++.++.++++|...++++|++++||+...+++++..+.+++.+|++||+|
T Consensus       179 ~~~~~~l~~l~~al-----~~~d~~~~~~~l~~~~~~~d~v~~~~a~vGar~nrle~~~~~~~~~~~~l~~~~S~ieD~D  253 (287)
T PRK08073        179 TPVIKTLKKMSDAM-----QKGDQKALQPLLEENKKNLDGIINRTTEVGSTMNTVETFKTILSEQNLALQENRKEIEDVD  253 (287)
T ss_pred             HHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             78999999999987-----5777878999999999999999999999989999999999888889999999887755546


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             8999999999999999999999997368505209
Q gi|254780523|r  324 QHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       324 ~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      ++|++++|++.+++|||++++|+||.++||||||
T Consensus       254 ~Aeai~~l~~~~~~lqAal~~~aki~q~SL~dyl  287 (287)
T PRK08073        254 LAVAISDLAYINATYEATLKAVSTMSKTSILDYM  287 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf             9999999999999999999999987055176219


No 8  
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=100.00  E-value=0  Score=375.34  Aligned_cols=314  Identities=14%  Similarity=0.139  Sum_probs=244.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||||.++|++++++|++.+.+|.++|+||+|||||.+|||||+++.+++.|+..++.+++|.+|+..+.+||...|++|
T Consensus         1 MRIst~~~~~~~~~~l~~~~~~l~~~q~qlssGk~i~~~SDDP~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L   80 (317)
T PRK08027          1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL   80 (317)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91766999999999999999999999999860786688101999999999999999999999999999999999899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765200-243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTD-EGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~-~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      +++.++++|+|++++++.||++++++|++++.|+++++++++.++|+++ .|+|+|+|++++++||......+.......
T Consensus        81 ~~~~~~l~~~rel~v~a~n~t~~~~~r~a~a~ei~~l~~~l~~~aN~~~~~G~ylF~G~~~~t~Pf~~~~~~y~G~~~~~  160 (317)
T PRK08027         81 SQVTTAIQSAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTEKAPFDEATGGYVGGTESI  160 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             99999999999999975068998778999999999999999999726476886445887789998406898723787664


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                                  ...............+..++..+....                            ...+.........
T Consensus       161 ------------~~~v~~~~~~~~~~~G~~vf~~~~~~~----------------------------~~~~~~~~~~~~i  200 (317)
T PRK08027        161 ------------TQQVDAARSMVIGHTGDQIFDSITSNA----------------------------VPEPDGSASETNL  200 (317)
T ss_pred             ------------EEECCCCCEEEECCCCHHHHHCCCCCC----------------------------CCCCCCCCCCCCH
T ss_conf             ------------463167632440577115550266566----------------------------5688888652329


Q ss_pred             HHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             112333332100-2334455511356677777899999999999999986689999999999899999999986433327
Q gi|254780523|r  243 IRDIMFVAVIGT-EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG  321 (357)
Q Consensus       243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d  321 (357)
                      +..+........ ...............+...+..|+.++++|...|+++|+|++|||...+.+++..+.+++.++++||
T Consensus       201 f~~ld~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~v~~~~a~iG~r~n~le~~~~~~~~~~l~~~~~~S~~eD  280 (317)
T PRK08027        201 FAMLDTAIAALKTPVAGSDADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVD  280 (317)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999987274568840156899999999999999999999999999899999999997667799899999876136


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             888999999999999999999999997368505209
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      +|++|++++|++.|++|||++++|+||.+|||||||
T Consensus       281 ~D~aeaisel~~~q~alqAa~~~faki~~lSLfd~l  316 (317)
T PRK08027        281 VDWNSAISSYVMQQAALQASYKTFTDMQGMSLFQLN  316 (317)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf             589999999999999999999999998347398760


No 9  
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=374.90  Aligned_cols=301  Identities=14%  Similarity=0.197  Sum_probs=265.4

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
                      +|||||++++++++++|++.|.+|.++++|||||||+++|+|||.++.+++.|+.+++++++|++|+..+.+||..+|++
T Consensus         2 ~MRist~~~~~~~l~~i~~~q~~l~~~q~qlsTGk~~~~~sddp~~~~~~l~l~~~~~~~~qy~~n~~~a~~~l~~~~~a   81 (302)
T PRK08913          2 IMRVATFANSSQMIAGALRTQQTMASLQIQESSGLKSESFAGLGASAQQAVNLQVSVTRAQSYIDAATLAQSKVEVMYSA   81 (302)
T ss_pred             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15754599999999999999999999999971487378866478999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88899999999999985137888988999999999865677777765200243041056654432122333332222222
Q gi|254780523|r   83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      |++|.++++++|++++++.|++.  .++.+++.|+++++++++.++|++++|+|+|+|.+++++||...........   
T Consensus        82 L~~~~~~~~~~~~l~v~a~~~t~--~~~~a~a~e~~~~~~~lv~~~Nt~~~GrYlFsGt~t~t~P~~~~~~~~~~~~---  156 (302)
T PRK08913         82 VSQIADLVQQLRSSLSAASTGTS--TDATSAASSAQQALTQMASLLNTQYGGQYVFAGADTTTAPVDFSSFASVAGD---  156 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEECCCCCCCCC---
T ss_conf             99999999999999986148985--5799999999999999999860744986255170289887321576655677---


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                                                                 .+......++.+.+......+..+..+...+.+++..
T Consensus       157 -------------------------------------------~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~a~~~~  193 (302)
T PRK08913        157 -------------------------------------------SASSADTSYYVGDDELTSVRVSATQSVAYGVTADNSA  193 (302)
T ss_pred             -------------------------------------------CCCCCCCEEEECCCCEEEEEECCCCEEECCCCCCCHH
T ss_conf             -------------------------------------------7765553277358725788855874032377888478


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
                      +..++.........      .......+...++.|+.++++|...++++|++++|||...++|+.....+++.++++||+
T Consensus       194 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~l~~a~~~l~~~~a~lG~~~~rle~~~~~~~~~~~~l~~~~s~ledv  267 (302)
T PRK08913        194 FEDVMRALMLVANS------SSLSSSTLSSALDLASTATDDLGDVQSRLSNAASRITAASSLQTEYKSFAETLLGDLTDV  267 (302)
T ss_pred             HHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999976447------875479999999999999999999999980999999999987899999999998863575


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             88999999999999999999999997368505209
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      |++|++++|++.|++|||+|++++||.+|||||||
T Consensus       268 D~aea~t~l~~~~~~lqAs~~~~ari~qlSL~dyL  302 (302)
T PRK08913        268 DVAAVTAQLSTYQAQLTASYSAISKMKSLNLASYL  302 (302)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf             99999999999999999999999986056086209


No 10 
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=366.76  Aligned_cols=348  Identities=31%  Similarity=0.467  Sum_probs=318.4

Q ss_pred             CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97613218999999999999999999999999720220464212899999999999999999999999999999999999
Q gi|254780523|r    1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ   80 (357)
Q Consensus         1 m~~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e   80 (357)
                      |+++.|||..+++.+++++.+.|.+|.++++|++|||+.+.++++|.++.+++.|+.++.++++|++++..+..||..++
T Consensus         1 m~~~~Ist~~~~~~lr~~~~~~q~~l~~~~~E~sTG~~ad~~~~lg~~~~~~~~l~~~~~~~~~~~~~~~~~~~rl~~~q   80 (348)
T PRK06008          1 MKTSFISTYALQNALRLTIAKLQAELVKAQTEATTGRYADVGLSLGSKTGRSVSLRREYDRLASLTDSNSLVTQRLTATQ   80 (348)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97500128999999999999999999999998713710565431126689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98888999999999999851378889889999999998656777777652002430410566544321223333322222
Q gi|254780523|r   81 AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKK  160 (357)
Q Consensus        81 ~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~  160 (357)
                      .+|++|.+.++++++.++.+.++..+   ...+..++++.+++++..+|++++|+|+|+|..++++|+............
T Consensus        81 ~aL~~i~~~~~~~~~~l~~~~~~~~~---~~~~~~~a~~~l~~lv~~lNt~~~G~yLFaG~~tdt~P~~d~~~~~s~~~~  157 (348)
T PRK06008         81 TALGQLIDAAQSFLNDLLAANASAET---GSVVAQSARSALSSLTSTLNTSVNGEYLFAGINTDVKPLTDYTAPGSAAKT  157 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf             99999999999999999824688860---889999999999999998726538852226867898875334567652024


Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCC
Q ss_conf             22100010134543222456653211233322100123344444566543200111566520000025641022320353
Q gi|254780523|r  161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM  240 (357)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                      ...........      ...........++.++..+++.++...+.+.+|...|+.+.+..+..++..++.+...+.+++
T Consensus       158 ~~d~~~~~~~~------~~~~~~~~a~it~~~~~~~~~~~~~~~f~~~~~~~~~s~as~~~~~~~I~~~~~v~~s~~An~  231 (348)
T PRK06008        158 AVDTAFQTFFG------FAQDDPAVSNITAAQMQTFLDGTFAPLFNDANWSANWSSASDTNITSRISPTETAETSTSANA  231 (348)
T ss_pred             HHHHHHHHHHC------CCCCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCC
T ss_conf             47777765403------677762043200566643304642113467630114355777652101378863303667886


Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             10112333332100233445551135667777789999999999999998668999999999989999999998643332
Q gi|254780523|r  241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI  320 (357)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~  320 (357)
                      .+++.+.................+.....+..++..|+.+++++...|+++|.+++|++...++++.....++..++++|
T Consensus       232 ~~~r~~~~~~~~~a~~~~~~l~~~a~~~~~~~a~~~l~~a~~~l~~~ra~lG~~q~rie~a~~r~~~~~~~l~~~~s~le  311 (348)
T PRK06008        232 EGFRKLAMAYVMVSELGDIGLSSEAQQTVTDKAITLTGQAITGLTTQQATLGLAQSRVKKANTRLDAQIKLLKGQILDLE  311 (348)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88999999999985025788986789999999999999999999999998659999999999989999999999987421


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             7888999999999999999999999997368505209
Q gi|254780523|r  321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       321 daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      |+|++|++++|+++|++|||+|++++||++|||+|||
T Consensus       312 ~vD~~Ea~t~l~~~q~qLeasy~~tarl~~LSL~nyL  348 (348)
T PRK06008        312 GVDPYEASTRVNALQTQIETSYSLTSQLQQLSLVNYL  348 (348)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_conf             7689999999999999999999999998513297419


No 11 
>pfam07164 consensus
Probab=100.00  E-value=0  Score=353.23  Aligned_cols=347  Identities=29%  Similarity=0.459  Sum_probs=312.3

Q ss_pred             CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97613218999999999999999999999999720220464212899999999999999999999999999999999999
Q gi|254780523|r    1 MKTTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQ   80 (357)
Q Consensus         1 m~~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e   80 (357)
                      |+++.|||..+++.++.++.+.|.+|.++++|++|||+.+.++++|.++.+++.|+.++.++++|++++..+..||..++
T Consensus         1 m~~~~ist~~~~~~~r~~~~r~Q~~l~~~~~E~sTG~~ad~~~~lg~~~~~~~~L~~~~~~l~~~~~~~~~a~~rl~~~q   80 (347)
T pfam07164         1 MKASFISTLALQNAMRSTILKNQAELVKAQTEATTGRHADVGLALGARTARSVSLRRDLDRLSVLVDTNSLVTQRLAATQ   80 (347)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96520218988989999999999999999998703820564001033389999899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98888999999999999851378889889999999998656777777652002430410566544321223333322222
Q gi|254780523|r   81 AHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLNGYFTKDSLAKK  160 (357)
Q Consensus        81 ~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~  160 (357)
                      ++|++|.+.++++++.++.+.++..+.   ..++.+.++.+++++..+|++++|+|+|+|..++.+|+..+.++......
T Consensus        81 ~aL~~i~~~~~~~~~~l~~~~~~~~~~---~~~~~~a~~~l~~li~~LNt~~~GryLFaG~~Td~~Pl~~~~~~~~~~~~  157 (347)
T pfam07164        81 TALGQMAEAAQEFLKDLVTATSSDAPT---LTVVSQASSALQNFTSALNTSFNGEYLFAGINTDVKPIDDYADGSAAKNA  157 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf             999999999999999998406898517---99999999999999999843508852326867898865245767532000


Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCC
Q ss_conf             22100010134543222456653211233322100123344444566543200111566520000025641022320353
Q gi|254780523|r  161 SFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNM  240 (357)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                      .. .....      ..............++.....++..++...+....|...|..+.+..+..++..++.+...+.+++
T Consensus       158 ~~-~~~~~------~~~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~is~~e~~~~~~~An~  230 (347)
T pfam07164       158 VD-TAFAA------AFGFAQTDPSVASITKAQMEDFLTTTFAAQFNDAFWATNWSKASDQNMTSRISTTEVADTSTSANS  230 (347)
T ss_pred             HH-HHHHH------HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             23-68888------760367870154411777765533543212455420145555777765510368844630465772


Q ss_pred             CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             10112333332100233445551135667777789999999999999998668999999999989999999998643332
Q gi|254780523|r  241 RGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI  320 (357)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~  320 (357)
                      .+++.+.....+.................+..++..|+.+++++...|+++|++++|+|...++++..+..++..++++|
T Consensus       231 ~~~r~~~~~~~~~~~~~~~~ls~~~~~~~~~~a~~~l~~a~~~l~~~~a~lG~~q~rie~a~~r~~~~~~~l~~~~~~le  310 (347)
T pfam07164       231 DGFRKFALAAVMVMELMDPKLSSEAFDMVVTKALGLIGQAITGLTQEQSTLGLSQSRVSKATTSLKAQQKILNTHILDLE  310 (347)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88999999999987325778787899999999999999999999999998638998899999989999999999987411


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             7888999999999999999999999997368505209
Q gi|254780523|r  321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       321 daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      |+|++|++++|+.+|++||++|++++||++|||+|||
T Consensus       311 ~vD~aEa~trl~~~q~qLeasy~vtarl~~LSL~nyL  347 (347)
T pfam07164       311 GVDPYEASTRVNTLQTQIETSYSLTSRLQKMSLINYL  347 (347)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6589999999999999999999999998342397409


No 12 
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=100.00  E-value=0  Score=333.37  Aligned_cols=345  Identities=16%  Similarity=0.140  Sum_probs=242.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||+|++.+..++++++..+.+|.+.++|||||+||++|+|||+++.++.+|+.++.+|++|.+|+..+.++|+++|++|
T Consensus         1 mrI~tn~~a~~~~~~l~~~~~~l~k~~~rlSSG~rI~~a~Ddaa~~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL   80 (360)
T COG1344           1 MRINTNMAALNALRNLNKNQSELAKSQERLSSGLRINSASDDAAGLAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGAL   80 (360)
T ss_pred             CEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96032999999999999999999999998523531478240589999999999999988999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      +++.++|+|+||++|++.||++++.||.+++.|+.++++++..++|++ ++|.|+|+|.+++ +||.....+........
T Consensus        81 ~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~iAntt~fnG~~lf~G~~t~-~p~~~~~~~~~~~~~~~  159 (360)
T COG1344          81 SEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIANTTSFNGEYLFAGSKTD-KPFDFQNAGGETIKGSF  159 (360)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC-CCCEECCCCCCEEEECC
T ss_conf             99999999999999986369999899999999999999999999852665885654776788-87200268762356303


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC---CCEEE----CCCCCCCEEE--CCCCCC
Q ss_conf             100010134543222456653211233322100123--344444566543---20011----1566520000--025641
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIK--QLEDKFSDDEYW---ANNWS----NASDHNIKYR--IKDTEG  231 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~----~~~~~~~~~~--~~~~~~  231 (357)
                      ...... .............................  ............   ...+.    ..........  ...+..
T Consensus       160 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (360)
T COG1344         160 NSDSSG-TVSVGLDITNTGDLSFTSLGTTAKDEPIDAGDVTAGPTNLFGAGANAADGASLGKALDAATTNTQIGANVGQT  238 (360)
T ss_pred             CCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_conf             345544-3400144665430110135653222455543221356543323332211011353111110110002223443


Q ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02232035310112333332100233445551135667777789999999999999998668999999999989999999
Q gi|254780523|r  232 IDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNI  311 (357)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~  311 (357)
                      .........     .......  ..................++..+|.+++++...|+++|++++|++...+++....++
T Consensus       239 ~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~id~Al~~i~~~ra~lGa~qnrl~~~~~~l~~~~~n  311 (360)
T COG1344         239 TTLNINDGN-----VMTASAA--GALADPGSSVATADGAQAALGTIDSALDNITSARAELGAVQNRLESAINNLSNQSDN  311 (360)
T ss_pred             EEECCCCCC-----HHHHHHH--HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             000245320-----1456543--344035543110446887999999999999999998738999999999889889999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             9986433327888999999999999999999999997368505209
Q gi|254780523|r  312 IDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       312 l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      ++..+++|+|+||+|++++|+++|+++|+++++++++++++|++|+
T Consensus       312 l~~~~s~i~D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~  357 (360)
T COG1344         312 LTAAESRIVDVDMAEESTELTKLQILQQASLQALAQANQLSLLVLS  357 (360)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998864007769999999999999999999999999860288897


No 13 
>PRK06819 flagellin; Validated
Probab=100.00  E-value=0  Score=315.13  Aligned_cols=347  Identities=10%  Similarity=0.013  Sum_probs=225.5

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
                      +++|.|+..+...+++|++.+..|.+.++||||||||++|+|||++++++.+|+.++..+++|.+|+..+.+||+++|++
T Consensus         1 m~~IntN~~A~~a~~~L~~~~~~l~ks~~rLSSG~rIn~asDDaAg~aia~~~~~~i~~l~q~~~N~~~~~s~lqtae~a   80 (371)
T PRK06819          1 MAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGA   80 (371)
T ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98686369999999999999999999999852216637710148899999999999988999999899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8889999999999998513788898899999999986567777776520-024304105665443212233333222222
Q gi|254780523|r   83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKS  161 (357)
Q Consensus        83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~  161 (357)
                      |.++.++|+|+||+++++.||++++.||+.+..|+.+++++|.+++|.+ |+|.++|.|......++...... ... ..
T Consensus        81 L~~i~~iLqRmRELavqAaNgt~s~~DR~~i~~Ei~ql~~ei~~ia~~t~fnG~~ll~g~~~~~~qvg~~~~~-~i~-i~  158 (371)
T PRK06819         81 LNEINNNLQRVRELTVQAQNGSNSASDLDSIQDEINQRLAEIDRVSDQTDFNGVKVLAENTTMSIQVGANDGE-TID-IN  158 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCCC-EEE-EE
T ss_conf             9999999999999999744677776789999999999999999998756788875017887524763277873-699-85


Q ss_pred             CCCHHHCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCEEECCCCC
Q ss_conf             210001013454322245665321----------12333221001233444445665432001-1156652000002564
Q gi|254780523|r  162 FDQMLQGFLEENSKSLLAGQHLEV----------SSMNAQQMTDFIKQLEDKFSDDEYWANNW-SNASDHNIKYRIKDTE  230 (357)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  230 (357)
                      ........................          ............................. ................
T Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (371)
T PRK06819        159 LQKIDSKSLGLGSYSVSGVSGALTSLTDTSVTGVTTTTALDFSDISTFAAGATVHGIGDVGTDGAYADGYVVRYFTTDGK  238 (371)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             04344432245543335655542110233443322221111222100001100233221000012245520110123443


Q ss_pred             CEEEE---EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10223---203531011233333210023344555113566777778999999999999999866899999999998999
Q gi|254780523|r  231 GIDVS---ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQN  307 (357)
Q Consensus       231 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~  307 (357)
                      .....   .....................................++..||.+++.|...|+++|++++|||+..++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~al~~iD~Ai~~v~~~Ra~lGA~qNrle~~~~nl~~  318 (371)
T PRK06819        239 QYKGEVDATNGKVTFADDANGDPIDDATALEAAAQFSPAGKATASPLETLDDALKQVDGLRSSLGAVQNRFESTVTNLNN  318 (371)
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10000123445300002234420000010134332001577899899999999999999999872999999999998999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999986433327888999999999999999999999997368
Q gi|254780523|r  308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       308 ~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ..++++..+|+|+|+||++++++|.+.|+.+|++.+++++..+.
T Consensus       319 ~~~nl~aa~s~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~  362 (371)
T PRK06819        319 TVTNLTSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQV  362 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999997532773039999999999999999999999997707


No 14 
>PRK08869 flagellin; Reviewed
Probab=100.00  E-value=0  Score=313.60  Aligned_cols=347  Identities=10%  Similarity=0.004  Sum_probs=225.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      .+|.|+......+++|++.+..|.+.++||||||||++|+|||++++++.+|+.++.+++++.+|+..+.+||+++|++|
T Consensus         3 ~~IntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL   82 (377)
T PRK08869          3 VNVNTNVSAMTAQRNLNGATSALNQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGAM   82 (377)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57826199999999999999999999998611066478201689999999999999999999998999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||++|+++||++++.||+++..|+.+++++|.+++|.+ |+|.|+|.|..... +|..............
T Consensus        83 ~~i~~iL~RmrELavqaaNgt~s~~DR~ai~~Ei~~L~~ei~~ian~t~fnG~~Ll~G~~~~~-~~q~g~~~g~~~~~~~  161 (377)
T PRK08869         83 NETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTK-SFQIGANSGEAVSLDL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-EEECCCCCCCEEEEEE
T ss_conf             999999999999999763465555579999999999999999999865548877424777660-2621467884599850


Q ss_pred             CCH-HHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC---------CCCCCCCCCCCCEEECCCCCCCEEECCCCC
Q ss_conf             100-0101345432224566532112--3332210012334---------444456654320011156652000002564
Q gi|254780523|r  163 DQM-LQGFLEENSKSLLAGQHLEVSS--MNAQQMTDFIKQL---------EDKFSDDEYWANNWSNASDHNIKYRIKDTE  230 (357)
Q Consensus       163 ~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (357)
                      ... ......................  ....+........         ................+........+....
T Consensus       162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  241 (377)
T PRK08869        162 SNMRSDAKIMGGASYVAEEGKDKDWTVSGDNSGLTLSFTDKGGEAQSININAKAGDDIEELATYINGQTDAVGASVTEDG  241 (377)
T ss_pred             CCCCHHHHCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             43201121367514522554455420014665326874036665225787325551378888875155543135641575


Q ss_pred             CEEEEEECCCCHHHHH-----HHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1022320353101123-----333321-0023344555113566777778999999999999999866899999999998
Q gi|254780523|r  231 GIDVSANVNMRGIRDI-----MFVAVI-GTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVF  304 (357)
Q Consensus       231 ~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~  304 (357)
                      ................     ...... ..........+.........++..||.++++|...|+++|+++||||...++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tt~~~a~~ai~~iD~Ai~~v~~~ra~lGA~~NrLe~~~~~  321 (377)
T PRK08869        242 KLQLFAANSSATGDLSFSGALAAELGLGNKGPVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN  321 (377)
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16886125544443000310222211244431112210012253399999999999999999999872899999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999986433327888999999999999999999999997368
Q gi|254780523|r  305 LQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       305 l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ++...++++..+|.|+|+||++++++|++.|+.+|++.+++++..+.
T Consensus       322 l~~~~~n~~aa~S~I~DaD~A~E~t~l~k~qil~Qa~~amLaqANq~  368 (377)
T PRK08869        322 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQA  368 (377)
T ss_pred             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999987423351319999999999999999999999997317


No 15 
>PRK12804 flagellin; Provisional
Probab=100.00  E-value=0  Score=312.53  Aligned_cols=290  Identities=12%  Similarity=0.038  Sum_probs=219.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||+|++.....+++|++.+.+|.++|+||||||||++|+|||++++++++|+.++.++++|.+|+..+.+||+++|++|
T Consensus         1 mrIt~n~~a~~al~~L~~~~~~l~~~q~rLSSGkrI~~asDDpa~~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al   80 (307)
T PRK12804          1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL   80 (307)
T ss_pred             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95624299999999999999999999998541176377421799999999999999999999998999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137-8889889999999998656777777652-------0024304105665443212233333
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLE-GKTDNNKFPINAGMLRDSYESFVTFANM-------TDEGQYLFSGINSSEKPLNGYFTKD  155 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n-~t~~~~d~~~~a~e~~~~~~~l~~~aN~-------~~~g~~~f~G~~~~~~p~~~~~~~~  155 (357)
                      .++.++|+|+||++++++| |++++.||.+++.|+.++++++..++|.       .|+|.++|.|.....+|........
T Consensus        81 ~~~~~il~R~rELavqaaN~Gt~s~~dr~ai~~Ei~~L~~qi~~~~n~~~i~~~t~f~G~~~~~g~~~~~~~~~~~~~~~  160 (307)
T PRK12804         81 TETHSILQRVRELVVQAGNTGTQDGTDLGAIQEEIKALVDEIGNGTDKNGISDRTEFNGKKLLDGTFKPAAPAAGTKSLT  160 (307)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf             99999999999999985367778888999999999999999974303340231042078761256654567677776169


Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEE
Q ss_conf             22222221000101345432224566532112333221001233444445665432001115665200000256410223
Q gi|254780523|r  156 SLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVS  235 (357)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
                      ...+......                           +............                       +......
T Consensus       161 ~~~g~~~~~~---------------------------~~v~~~~~~~~~~-----------------------~~~~~~~  190 (307)
T PRK12804        161 FQIGANAAQQ---------------------------LSVNIEAMSADAL-----------------------GVKDADG  190 (307)
T ss_pred             EEECCCCCCE---------------------------EEEEEEECCCHHH-----------------------CCCCCCC
T ss_conf             9854777643---------------------------7887542330231-----------------------3555554


Q ss_pred             EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             20353101123333321002334455511356677777899999999999999986689999999999899999999986
Q gi|254780523|r  236 ANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTY  315 (357)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~  315 (357)
                      ...........        ...............+...+..|+.++++|...|+++|++++||+...++++....+++..
T Consensus       191 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~id~al~~v~~~ra~lGA~~nrle~~~~~l~~~~~nl~~~  262 (307)
T PRK12804        191 TLVTGKSVSDI--------DVTKFADIAADADGGFDDQLDIVDGAIKQVSDQRSKLGAVQNRLEHTINNLGASSENLTAA  262 (307)
T ss_pred             CCCCCCCCCHH--------HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             21234210000--------2233200011001007889999999999999999886899999999998899999999998


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433327888999999999999999999999997368
Q gi|254780523|r  316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       316 ~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +|+++|+||++++++|+++|+.+||+.++.++..+.
T Consensus       263 ~s~i~DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~  298 (307)
T PRK12804        263 ESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQ  298 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             743560069999999999999999999999998266


No 16 
>PRK12803 flagellin; Provisional
Probab=100.00  E-value=0  Score=309.06  Aligned_cols=325  Identities=10%  Similarity=0.006  Sum_probs=222.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      ++|.|+......+++|.+.+..|.+.++||||||||++|+|||++++++.+|+.++.+++++.+|+.++.+||+++|++|
T Consensus         1 ~~IntN~~a~~A~~~l~~~~~~l~~s~~rLSSG~RInsa~DDaAGlaIa~~l~sqi~~l~qa~rNa~daiS~lqtaegal   80 (335)
T PRK12803          1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL   80 (335)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96726799999999999999999999998510066477421588999999999999989999853988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765-200243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN-~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|||||+||++||++++.||.++..|+.++.++|.++++ ++|+|.++|.|......+......+........
T Consensus        81 ~ei~~iLqRmrELavqAaNgT~s~~dr~~i~~E~~qL~~eI~~Ia~~T~fNg~~ll~g~~~~~~~~~~~~~~~~~~~~~~  160 (335)
T PRK12803         81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQNVRTAEELGMQPAKINT  160 (335)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             99999999999999985367899899999999999999999999984836886144676533231117650654223565


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                      .......          ..........+......+..    ........ ....+.+.........+...........+.
T Consensus       161 ~~~~~~~----------~~~~t~~~~~g~~~~~~~~~----~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  225 (335)
T PRK12803        161 PASLSGS----------QASWTLRVHVGANQDEAIAV----NIYAANVA-NLFSGEGAQQAAPVQEGAQQEGAQAAPAPA  225 (335)
T ss_pred             CCCCCCC----------CCCEEEEEEECCCCCCEEEE----EEEECHHH-HHHCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             2211355----------55236899863777633788----53200366-654145520111110011001100012200


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
                             .... ..................++..||.+++.|...|+++|+.++|||+..+.+....++++..+|+|+|+
T Consensus       226 -------~~~~-~~g~~~~~~i~t~~~A~~ai~~iD~Ai~~v~~~Ra~lGA~qNRLe~~~~nl~~~~~Nl~aa~SrI~Da  297 (335)
T PRK12803        226 -------AAPA-QGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDA  297 (335)
T ss_pred             -------CCCC-CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             -------0001-35654543000086599999999999999999999870899999999989999999999975315630


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999999999999997368
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      |||+++++|.+.|+..|++.+++++..+.
T Consensus       298 D~A~E~~~ltk~qil~Qa~~amLaQAN~~  326 (335)
T PRK12803        298 TMTDEVVASTTNSILTQSAMAMIAQANQV  326 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             59999999999999999999999997617


No 17 
>PRK12807 flagellin; Provisional
Probab=100.00  E-value=0  Score=307.21  Aligned_cols=277  Identities=10%  Similarity=0.051  Sum_probs=225.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||.|++.....+.+|++.+.+|.+.++||||||||++|+|||++++.+.+|+.++.++++|.+|+..+.+||+++|++|
T Consensus         1 mrIntN~~a~~a~~~l~~~~~~l~~~~~rlSSG~rIn~asDD~ag~aia~~l~s~~~~~~~~~~N~~~a~s~l~tad~al   80 (287)
T PRK12807          1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM   80 (287)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95514299999999999999999999998600166478553799999999999999989999988998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776-5200243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFA-NMTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~a-N~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||+++++.||++++.||.++..|+.+++++|..++ |++|+|.++|.|......|+..............
T Consensus        81 ~~i~~il~RmrELavqa~n~t~s~~dR~ai~~E~~~L~~~i~~Ia~nt~fnG~~l~~g~~~~~~~~~~~~~~~~~~~~~~  160 (287)
T PRK12807         81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD  160 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             99999999999999987447998888999999999999999999985738987402788765454435677526787412


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                      ..                         ...                 ......          ..            ...
T Consensus       161 ~~-------------------------~~~-----------------~~~~~~----------~~------------~~~  176 (287)
T PRK12807        161 SS-------------------------ATN-----------------QQITIK----------LA------------NTT  176 (287)
T ss_pred             CC-------------------------CCC-----------------CEEEEE----------EC------------CCC
T ss_conf             56-------------------------666-----------------337887----------41------------331


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
                      ...+    ..   ..................+..|+.++++|...|+.+|++++||+...+.+.....+++..+|+++|+
T Consensus       177 ~~~~----~~---~~~~~~~~~~~~~~a~~~l~~id~ai~~v~~~ra~lGA~~nrle~~~~~l~~~~~~l~~~~S~i~Da  249 (287)
T PRK12807        177 AEKL----GI---DATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDA  249 (287)
T ss_pred             HHHH----CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3442----32---3323433345477799999999999999999999989999999999989999999999998877710


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999999999999997368
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ||++++++|.++|+.+||+.+++++..+.
T Consensus       250 D~A~e~~~l~~~qil~Qaa~a~lsqAN~~  278 (287)
T PRK12807        250 DMAKEMSEMTKFKILNEAGISMLSQANQT  278 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             49999999999999999999999998467


No 18 
>PRK12802 flagellin; Provisional
Probab=100.00  E-value=0  Score=299.19  Aligned_cols=271  Identities=14%  Similarity=0.065  Sum_probs=220.3

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
                      .+||.|++.+...+++|++.+.+|.+.++||||||||++|+|||++++.+++|+.++..+++|.+|+..+.+||+++|++
T Consensus         2 ~m~I~tN~~a~~a~~~L~~~~~~l~~s~~rlSSGkri~~~sDDpa~~a~a~~l~s~~~~~~q~~~N~~~a~s~l~~ad~a   81 (282)
T PRK12802          2 ALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEGA   81 (282)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             71783769999999999999999999999872205516764449999999999999998999998899999899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             888999999999999851378889889999999998656777777652-0024304105665443212233333222222
Q gi|254780523|r   83 LSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKS  161 (357)
Q Consensus        83 L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~  161 (357)
                      |.++.++|+|+||++++++|++++++||.+++.|+.++++++..++|. +++|.|+|.|.....+ |..........   
T Consensus        82 L~~i~~~l~R~reLavqaan~t~s~~dr~ai~~Ei~~L~~qi~~ian~t~fnG~~lf~g~~~~~~-~~vg~~~~~~~---  157 (282)
T PRK12802         82 LQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMT-FQVGANTGQSN---  157 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE-EEECCCCCCEE---
T ss_conf             99999999999999997623789999999999999999999999987462788530058887557-87647888604---


Q ss_pred             CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf             21000101345432224566532112333221001233444445665432001115665200000256410223203531
Q gi|254780523|r  162 FDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMR  241 (357)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (357)
                                                    .+.......+.                                 ......
T Consensus       158 ------------------------------~~~~~~~~~~~---------------------------------~~~~~~  174 (282)
T PRK12802        158 ------------------------------QITFGLSASFD---------------------------------ATGLGV  174 (282)
T ss_pred             ------------------------------EEEEEECCCCC---------------------------------CCCCCC
T ss_conf             ------------------------------78752012235---------------------------------434243


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             01123333321002334455511356677777899999999999999986689999999999899999999986433327
Q gi|254780523|r  242 GIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG  321 (357)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d  321 (357)
                      .           ................+...+..|+.++++|...|+++|++++||+...+++.....+++..+++++|
T Consensus       175 ~-----------~~~~~~~~~~~~~~~~~~~~l~~id~ai~~v~~~ra~~Ga~~nrle~~~~~l~~~~~nl~~~~s~i~D  243 (282)
T PRK12802        175 G-----------SGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISNLQNINENASAARGRVQD  243 (282)
T ss_pred             C-----------HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             2-----------02331244221105469999999999999999999987499889999998899999999998766660


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             888999999999999999999999997368
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +|+++++++|++.|+.+||+++++++..+.
T Consensus       244 aD~A~e~~~l~~~qi~~Qaa~a~laqANq~  273 (282)
T PRK12802        244 TDFAAETAQLTKQQTLQQASTSVLAQANQL  273 (282)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             059999999999999999999999999676


No 19 
>PRK12805 flagellin; Provisional
Probab=100.00  E-value=0  Score=295.68  Aligned_cols=276  Identities=12%  Similarity=0.104  Sum_probs=217.6

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||.|++.+...+++|++.+.+|.+.++||||||||++|+|||++++++.+|+.++.++++|.+|+..+.+||+++|++|
T Consensus         1 mrIntN~~a~~a~~~L~~~~~~l~~s~~rLSSG~rIn~asDDaag~aia~~l~s~~~~~~q~~~N~~da~s~lqtad~aL   80 (287)
T PRK12805          1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL   80 (287)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95545499999999999999999999998602355167431699999999999999989999988999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||++|+++||+++++||.++..|+.++.++|..+++++ |+|.++|.|......+.............  
T Consensus        81 ~~i~~iL~RmreLavqaangt~s~~dr~~i~~Ei~~L~~~i~~ia~~t~fng~~ll~~~~~~~~~~~~~~~~~~~~~~--  158 (287)
T PRK12805         81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDL--  158 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEECCCCCCE--
T ss_conf             998999999999999755788887889999999999999999998735678852557777777424787514776623--


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCH
Q ss_conf             10001013454322245665321123332210012334444456654320011156652000002564102232035310
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRG  242 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                                   ...     ...  ...+..           .   .......  +                       
T Consensus       159 -------------~~~-----~~~--~~~~~~-----------~---~~~~~~~--~-----------------------  179 (287)
T PRK12805        159 -------------INI-----DLF--NAKGLS-----------A---GTITLGS--G-----------------------  179 (287)
T ss_pred             -------------EEE-----ECC--CCCCCC-----------C---CCCCCCC--C-----------------------
T ss_conf             -------------676-----402--223444-----------2---2200255--4-----------------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             11233333210023344555113566777778999999999999999866899999999998999999999864333278
Q gi|254780523|r  243 IRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGV  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~da  322 (357)
                                 ...................++..||.+++.|...|+++|++++||+...+++.....+++..+|+++|+
T Consensus       180 -----------~~~~~~~~~~~~~~~~a~~a~~~id~ai~~v~~~ra~lGA~~NrLe~~~~~l~~~~~nl~~~~S~i~Da  248 (287)
T PRK12805        180 -----------STVAGYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDA  248 (287)
T ss_pred             -----------CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             -----------200010000012477899999999999999999999999999999999999999999999987537722


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999999999999997368
Q gi|254780523|r  323 EQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       323 D~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      |||+++++|.+.|+.+|++.+++++..+.
T Consensus       249 D~A~e~~~l~k~qil~Qaa~amlaQAN~~  277 (287)
T PRK12805        249 DMAAEMSEMTKYKILTQTSISMLSQANQT  277 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             19999999999999999999999998327


No 20 
>PRK12808 flagellin; Provisional
Probab=100.00  E-value=0  Score=292.91  Aligned_cols=348  Identities=11%  Similarity=0.063  Sum_probs=221.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||-|+...-..+++|.+.+..|.+.++|||||+||++++|||++++++.+||.++..|++..+|..++.+.++++|++|
T Consensus         1 m~IntN~~Al~a~~~L~~~~~~l~~s~eRLSSG~RIN~A~DdAAGlaIs~rm~sqi~gl~qa~~Na~dgiS~~qtAEgal   80 (460)
T PRK12808          1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM   80 (460)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96644699999999999999999999998501165266410288999999999999889999998998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654432122333332--2222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDS--LAKK  160 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~--~~~~  160 (357)
                      +++.++|+|||||+||++||++++.||+++..|+.+++++|.++++.+ |+|.++|.|......+.........  ....
T Consensus        81 ~ev~~iLqRmReLAVQAANgTns~~DR~aiQ~Ei~qL~~EIdrIa~~T~fNg~~LLdGs~~~~~~~~~~~~~~~~~i~i~  160 (460)
T PRK12808         81 NSVSNILLRMRDLANQSANGTNTDKNQAALQKEFAELQKQIDYIADNTQFNDKNLLDGSNSSIAIQTLDSSDGGKQIGID  160 (460)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEE
T ss_conf             99999999999999986156688788999999999999999999873856887600577875026741267876068641


Q ss_pred             CCCCHHHC------CCCCCCCCC-------------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------
Q ss_conf             22100010------134543222-------------------------4566532112333221001233444-------
Q gi|254780523|r  161 SFDQMLQG------FLEENSKSL-------------------------LAGQHLEVSSMNAQQMTDFIKQLED-------  202 (357)
Q Consensus       161 ~~~~~~~~------~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------  202 (357)
                      ........      .........                         ..................+......       
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (460)
T PRK12808        161 LKSASLEALGINNLSIGANGNGLAKATELAGVADDTAANASAAAAKKIDDTTGDTDVKRDAAKVKAYTKQYKALKAALDA  240 (460)
T ss_pred             CCCCCHHHCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             23232010255530001323333311242020132113331112010133334320023332110000011210000244


Q ss_pred             ----------CCCCCCCCCCE-------EECCCCC---------CCEEECC------CCCC---------EEEEEECCCC
Q ss_conf             ----------44566543200-------1115665---------2000002------5641---------0223203531
Q gi|254780523|r  203 ----------KFSDDEYWANN-------WSNASDH---------NIKYRIK------DTEG---------IDVSANVNMR  241 (357)
Q Consensus       203 ----------~~~~~~~~~~~-------~~~~~~~---------~~~~~~~------~~~~---------~~~~~~~~~~  241 (357)
                                ...........       .......         .......      ....         ..........
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (460)
T PRK12808        241 KDTGLIDDAKKLVDGANTLLNAQAIKKAEETAAKATLTTDITAATLVDKYSDAKSDATTDTRAKAYLDAKAAYDKVKGSM  320 (460)
T ss_pred             CCCCCCCCCHHCCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCC
T ss_conf             11111232011013321021022332100000112224444210110022234443445430000000000000235654


Q ss_pred             ----------H---------HHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----------0---------112333332100233--4455511356677777899999999999999986689999999
Q gi|254780523|r  242 ----------G---------IRDIMFVAVIGTEFL--SKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINE  300 (357)
Q Consensus       242 ----------~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~  300 (357)
                                .         ...............  ...............++..||.+++.|...|+++|+.+||||+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~A~~Ai~~ID~AI~~v~~~Ra~lGA~qNRLe~  400 (460)
T PRK12808        321 NSKDVTKLSAAIDRFSKDDASGDAAEVLVAKGDAAKAATTNGTTSTATDSLSAVKAIDEALKTIADNRATLGATLNRLDF  400 (460)
T ss_pred             CCCCCEEECCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             43211011010101012455521455566521210012245442115559999999999999999999988189999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999899999999986433327888999999999999999999999997368
Q gi|254780523|r  301 ERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       301 ~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ..+++....++++..+|.|+|+|||+++++|++.|+..||+.+|.++..+.
T Consensus       401 ~i~nL~~~~eN~~aa~SrI~DaDmA~E~a~ltk~qILqQAgtamLAQANq~  451 (460)
T PRK12808        401 NVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQT  451 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999997667660659999999999999999999999996517


No 21 
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=100.00  E-value=0  Score=294.87  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=144.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      |||+.++.|++++.++++.+++|.++++|+|||+||+.|+|||++....++||.++..++||.++...+..+++.+|.+|
T Consensus         1 Mrvt~~~~~~~~~~~~~~~~~~l~~~~~q~ssg~kI~~~~dd~~~~~~~~~l~~~i~~l~q~~~~~~~a~~~~~~td~aL   80 (777)
T PRK08412          1 MRVTFGSKYNQMNNYQNALQNKLNDANTQIASGLKIQYGYQDSDINNQNLKLQYEENTLDQGIDVAQNAYTSTLNTDKAL   80 (777)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93122133899999887889999999998642672336454746665553156677657899987887999998799999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520024304105665443212
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMTDEGQYLFSGINSSEKPLN  149 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~~~g~~~f~G~~~~~~p~~  149 (357)
                      .++.++|+|+|+++|||+|++++..+|.+++.|+++++++++++||++++|+|+|+|.+.+++||.
T Consensus        81 ~e~~~~l~~~k~~~vqaand~~~~~sr~aia~el~~lk~~~~~iant~~~g~~lf~G~~~~~kpf~  146 (777)
T PRK08412         81 QEFSKTMEAFKTKLIQAANDVHSETSREAIANDLERLKEHMINIANTSIGGEFLFGGSKVDRPPFD  146 (777)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
T ss_conf             999999999999999860256887789999999999999998642255676798625545668646


No 22 
>PRK13588 flagellin B; Provisional
Probab=100.00  E-value=0  Score=286.93  Aligned_cols=345  Identities=12%  Similarity=0.054  Sum_probs=221.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||-|+...-..+++|.+.+..|.+..||||||+||++++|||++.+++.+||.++..|++..+|..++.+.++++|++|
T Consensus         3 ~~IntNi~Al~a~~~L~~~~~~l~~slerLSSG~RIN~A~DDAAGlaIs~rmrsQi~gl~qA~rNa~dgiSliQTAEGAL   82 (514)
T PRK13588          3 FRINTNIAALNAHANGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQAANLGQAIRNANDAIGIVQTADKAM   82 (514)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47956899999999999999999999997521065356430377899999999999889999986888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCC----
Q ss_conf             889999999999998513788898899999999986567777776520-024304105665443212233333222----
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLA----  158 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~----  158 (357)
                      .++.++|+|||||+||++|++++++||.++..|+.+++++|.++++++ |+|.++|-|......+...........    
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~t~s~~dR~alQ~Ei~qL~~EIdrIa~~T~FNg~~LLdGs~~~~~~qvGa~~~~ti~~~~~  162 (514)
T PRK13588         83 DEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIG  162 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEECCCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999999999999987037898889999999999999999877652623888503677777128853788854788504


Q ss_pred             -------C-CCCC-------------CHHHC------CCCCCCCCC--------C--CCC----------------CCCC
Q ss_conf             -------2-2221-------------00010------134543222--------4--566----------------5321
Q gi|254780523|r  159 -------K-KSFD-------------QMLQG------FLEENSKSL--------L--AGQ----------------HLEV  185 (357)
Q Consensus       159 -------~-~~~~-------------~~~~~------~~~~~~~~~--------~--~~~----------------~~~~  185 (357)
                             + ....             .....      .........        .  ...                +...
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  242 (514)
T PRK13588        163 ATSSDKIGHVRFETSSFSGEGMLASAAAQNLTEVGLKFKQVDGVNDYKIETVRISTSAGTGIGALAEIINKFSDTLGVRA  242 (514)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEE
T ss_conf             54355434302320243333320000034555410244202454431023457630146406778765304455443047


Q ss_pred             -CCC--------CCCCCCCC----------------------CCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEE
Q ss_conf             -123--------33221001----------------------23344444566543200111566520000025641022
Q gi|254780523|r  186 -SSM--------NAQQMTDF----------------------IKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDV  234 (357)
Q Consensus       186 -~~~--------~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (357)
                       ...        .......+                      +..... .... .. ................++..+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-tg-~~~~~~~~g~~~~~~~~g~~i~~  319 (514)
T PRK13588        243 SYNVMATGGTPIQSGTVRELTINGVEIGTVNDVHKNDADGRLINAINS-VKDR-TG-VEASLDIQGRINLTSRDGRAISV  319 (514)
T ss_pred             EEEEEECCCCCCCCCCCEEEEECCEEECCCEEEECCCCCCHHHHHHHC-CCCC-CC-EEEEEECCCCEEEEECCCCEEEE
T ss_conf             899863145322344301355414010221010024654025554303-2344-44-26896046607887237723898


Q ss_pred             E-----------------------------EECCCC-------------HHHHHHH---------------------HHH
Q ss_conf             3-----------------------------203531-------------0112333---------------------332
Q gi|254780523|r  235 S-----------------------------ANVNMR-------------GIRDIMF---------------------VAV  251 (357)
Q Consensus       235 ~-----------------------------~~~~~~-------------~~~~~~~---------------------~~~  251 (357)
                      .                             ....+.             .......                     ...
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  399 (514)
T PRK13588        320 HGASASGQVFGGGNFAGISGTQHAFVGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIIDANVASAAG  399 (514)
T ss_pred             ECCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCC
T ss_conf             40455550003441010245532000211355204420354123333333101345530023201224410242000134


Q ss_pred             HHCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             1002------3344555113566777778999999999999999866899999999998999999999864333278889
Q gi|254780523|r  252 IGTE------FLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQH  325 (357)
Q Consensus       252 ~~~~------~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~a  325 (357)
                      ....      .......+.........+++.||.+++.|...|++||+.|||||+..+.|....++++..+|+|+|+|||
T Consensus       400 ~~~~~~~~~~~~~~~~~~v~t~~~A~~ai~~iD~Ai~~Vs~~Ra~LGA~QNRLe~ti~nL~~~~eNl~aA~SrI~DaDmA  479 (514)
T PRK13588        400 ANANGAQAETNSQGIGAGVTSLKGAMIVMDMAESARKQLDKIRSDLGSVQNQLVSTINNISVTQVNVKAAESQIRDVDFA  479 (514)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20124322121333355653277799999999999999999998772999999999998999999999998889852199


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999997368
Q gi|254780523|r  326 TAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       326 e~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +|+++|++.|+..||+.+|.++..++
T Consensus       480 ~Ema~lTk~qIL~QAg~amLAQANq~  505 (514)
T PRK13588        480 EESANFSKYNILAQSGSFAMAQANAV  505 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999998256


No 23 
>PRK12806 flagellin; Provisional
Probab=100.00  E-value=0  Score=284.46  Aligned_cols=348  Identities=10%  Similarity=0.031  Sum_probs=223.4

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      .+|-|+...-..+++|.+.+..|.+.++|||||+||++++|||++++++.+||.++..+++..+|..++.+.++++|++|
T Consensus         3 l~IntN~~Al~a~~~L~~~~~~l~~s~erLSSG~rIN~AaDDaAGlaIs~~m~aqi~gl~qa~~N~~dgiSl~qtAegAL   82 (475)
T PRK12806          3 QVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAM   82 (475)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             18966599999999999999999999997430276256530378999999999999889999998998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8899999999999985137888988999999999865677777765-200243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFAN-MTDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN-~~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|||||+||++|+++++.||.++..|+.+++++|.++++ ++|+|+++|.|......+...............
T Consensus        83 ~ev~~iLqRmReLAvQAaNgTn~~~DR~aiq~Ei~qL~~eIdrIa~~T~fNg~~LLdGs~~~~~~qvG~~~~~~i~~~~~  162 (475)
T PRK12806         83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFSIG  162 (475)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCEEEECCCCCCCEEEECCCCCCEEEEEEC
T ss_conf             99999999999999986168887788999999999999999878652626888741367777216753788856899614


Q ss_pred             C--------------CHHHCCCCCCCC--------CCCCCCCC-----------------------------CCCCCCCC
Q ss_conf             1--------------000101345432--------22456653-----------------------------21123332
Q gi|254780523|r  163 D--------------QMLQGFLEENSK--------SLLAGQHL-----------------------------EVSSMNAQ  191 (357)
Q Consensus       163 ~--------------~~~~~~~~~~~~--------~~~~~~~~-----------------------------~~~~~~~~  191 (357)
                      .              ............        ........                             ......+.
T Consensus       163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (475)
T PRK12806        163 SIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTSGT  242 (475)
T ss_pred             CCCCCCCCCEEEECCCEECCCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf             43112225501102311024432014675046531110233302310245430134433211023454533565303442


Q ss_pred             CCCCCCCC----CCCCCCCC------------------------CCCC-CEEECCCCCCCEEECCCCCCEEEEEECC---
Q ss_conf             21001233----44444566------------------------5432-0011156652000002564102232035---
Q gi|254780523|r  192 QMTDFIKQ----LEDKFSDD------------------------EYWA-NNWSNASDHNIKYRIKDTEGIDVSANVN---  239 (357)
Q Consensus       192 ~~~~~~~~----~~~~~~~~------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  239 (357)
                      ........    .+......                        .... .......+.........+..+.......   
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~i~~~~~~t~~~  322 (475)
T PRK12806        243 QAVGAIGGTAGDTYNLTINGVAIYTNLNVATALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTESGTGFT  322 (475)
T ss_pred             EEEEECCCCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf             13210234556521333124024411320002342268887521233341488713660689840564158850354200


Q ss_pred             ---------CCHH-------------HHHHHHHH---------HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------3101-------------12333332---------1002334455511356677777899999999999999
Q gi|254780523|r  240 ---------MRGI-------------RDIMFVAV---------IGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQR  288 (357)
Q Consensus       240 ---------~~~~-------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~  288 (357)
                               ...+             .....+..         ...........+.........++..||.+++.|...|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~g~~~idv~t~~~A~~Ai~~ID~AI~~V~~~R  402 (475)
T PRK12806        323 AGTDGLTVTGGAFDGALRGTLSISAVDTIAIGGTVANIGLSANISKDTVGIDSLDVSTASGAQTAIKRIDAALNSVNSNR  402 (475)
T ss_pred             CCCCCEEECCCCCCCCCCCEEEECCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             24543132045434411330111122101015401001222334444445333445437779999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  289 AVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       289 a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +++|+.|||||+..++++...++++..+|.|+|+|||+|+++|++.|+..||+.+|.++..+.
T Consensus       403 a~lGA~qNRLe~~i~nL~~~~eN~~aA~SrI~DaDmA~E~s~ltk~qILqQA~~amLAQANq~  465 (475)
T PRK12806        403 ANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSL  465 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             987089999999999999999999997546450229999999999999999999999996507


No 24 
>PRK08026 flagellin; Validated
Probab=100.00  E-value=0  Score=282.62  Aligned_cols=138  Identities=10%  Similarity=0.037  Sum_probs=132.2

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      .+|-|+...-..+++|.+.+..|.+..||||||+||++++|||++.+++.+||.++..|++..+|..++.+.++++|++|
T Consensus         3 ~~INtNi~Al~a~~~L~~~~~~l~~sleRLSSGlRIN~A~DDAAGlaIs~rm~sQi~GL~qA~rNa~DgiSliQTAEGAL   82 (566)
T PRK08026          3 QVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGAL   82 (566)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37966799999999999999999999997510166466321467899999999999889999986988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGI  141 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~  141 (357)
                      +++.++|+|||||+||++|+++++.||.++..|+.+++++|.++++++ |+|+++|.|.
T Consensus        83 ~ev~~iLqRmRELAVQAANgTns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LL~g~  141 (566)
T PRK08026         83 SEINNNLQRIRELTVQAATGTNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKD  141 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf             99999999999999986047899999999999999999999988874738989602788


No 25 
>PRK12584 flagellin A; Reviewed
Probab=100.00  E-value=0  Score=282.61  Aligned_cols=347  Identities=8%  Similarity=-0.001  Sum_probs=221.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      .||-|+...-...++|.+.+..|.+..||||||+||++++|||++.+++.+||.++..|+|..+|..++.+.++++|++|
T Consensus         3 ~~INtNi~Alna~~~L~~~~~~ls~sleRLSSGlRIN~AaDDAAGlaIserm~sQI~gL~qA~rNa~DgiSliQTAEGAL   82 (510)
T PRK12584          3 FQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAM   82 (510)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37965599999999999989999999987533266466430666889999999999889999884887999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|||||+||++|++++++||.++..|+.+++++|.++++.+ |+|.++|.|......... ............
T Consensus        83 ~ev~~iLqRmRELAVQAAN~tns~~dR~aiQ~Ei~qL~~EIdRIa~~T~FNg~~LLdGs~~~~~~qv-Ga~~~~~i~~~i  161 (510)
T PRK12584         83 DEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQV-GAYSNQSIKASI  161 (510)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEECCCCCCCCCEEEE-CCCCCCEEEEEC
T ss_conf             9999999999999998603889888999999999999999856623165788862267778730775-578885588743


Q ss_pred             CC-------------------------HHHCCCCCCCCC-------C----------------CCCCCCCC--CC-----
Q ss_conf             10-------------------------001013454322-------2----------------45665321--12-----
Q gi|254780523|r  163 DQ-------------------------MLQGFLEENSKS-------L----------------LAGQHLEV--SS-----  187 (357)
Q Consensus       163 ~~-------------------------~~~~~~~~~~~~-------~----------------~~~~~~~~--~~-----  187 (357)
                      ..                         ............       .                ....+...  ..     
T Consensus       162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~dg~~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  241 (510)
T PRK12584        162 GSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSD  241 (510)
T ss_pred             CCCCCCCCCCEEEECCCEEECCCCEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEECC
T ss_conf             54545444423430253121144035554213564420120046640467513678876513454433045677774022


Q ss_pred             ---CC---------CCCCCCC---CCC-C-------CCCCCCCCCCC--------CEEECCCCCCCEEEC----------
Q ss_conf             ---33---------3221001---233-4-------44445665432--------001115665200000----------
Q gi|254780523|r  188 ---MN---------AQQMTDF---IKQ-L-------EDKFSDDEYWA--------NNWSNASDHNIKYRI----------  226 (357)
Q Consensus       188 ---~~---------~~~~~~~---~~~-~-------~~~~~~~~~~~--------~~~~~~~~~~~~~~~----------  226 (357)
                         ..         +......   ... .       ........+..        .......+..+....          
T Consensus       242 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tg~~a~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~  321 (510)
T PRK12584        242 VAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSTDGRGIEIKTDSVSNGPSAL  321 (510)
T ss_pred             CEECCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEE
T ss_conf             10013531023203413310111013565146776531223454316885156716776315752487512444564215


Q ss_pred             ---CCCCCEE-------------------EEEECCCCH--------H--HHHHHHH----------------HHHC----
Q ss_conf             ---2564102-------------------232035310--------1--1233333----------------2100----
Q gi|254780523|r  227 ---KDTEGID-------------------VSANVNMRG--------I--RDIMFVA----------------VIGT----  254 (357)
Q Consensus       227 ---~~~~~~~-------------------~~~~~~~~~--------~--~~~~~~~----------------~~~~----  254 (357)
                         ..+....                   ..+......        +  .......                ....    
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (510)
T PRK12584        322 TMVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYNA  401 (510)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCC
T ss_conf             77415410023433323036653145321344214444332032025654202344311223554343201102555321


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             ---23344555113566777778999999999999999866899999999998999999999864333278889999999
Q gi|254780523|r  255 ---EFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQL  331 (357)
Q Consensus       255 ---~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l  331 (357)
                         ..................+++.||.+++.|...|++||+.|||||+..+.|....+++...+|+|+|+|||+|+++|
T Consensus       402 ~~~~~~~~~~~~v~t~~~A~~ai~~iD~AI~~V~~~Ra~LGA~QNRLe~ti~NL~~~~eNltaA~SrI~DaD~A~Ema~~  481 (510)
T PRK12584        402 VIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANF  481 (510)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00135542355543377799999999999999999997664899989999988999999999998889853089999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999997368
Q gi|254780523|r  332 STLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       332 ~~~q~~~qas~~~~a~i~~~  351 (357)
                      ++.|+..||+.+|.+|..++
T Consensus       482 tk~qIL~QAgtamLAQANq~  501 (510)
T PRK12584        482 NKNNILAQSGSYAMSQANTV  501 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999986176


No 26 
>PRK08411 flagellin; Reviewed
Probab=100.00  E-value=0  Score=277.90  Aligned_cols=141  Identities=12%  Similarity=0.047  Sum_probs=135.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||-|+...-..+++|.+.+..|.+..+|||||+||++++|||++.+++.+|+.++..|++..+|..++.+.++++|++|
T Consensus         3 l~INtNi~alna~r~L~~s~~~l~~sleRLSSGlRINsA~DDAAGLaISerm~sQI~GL~qA~rNanDgISl~QTAEGAL   82 (573)
T PRK08411          3 FRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAM   82 (573)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             27956799999999999999999999987500065566330477899999999998889999986988999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSS  144 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~  144 (357)
                      .+++++|+|||||+||++|++++++||+++..|+.+++++|.++++++ |+|++||-|....
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~tns~~DR~alQ~Ei~qL~~EIdRIa~tT~FNg~kLLdGs~~~  144 (573)
T PRK08411         83 DEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN  144 (573)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEECCCCCCC
T ss_conf             99999999999999996146899899999999999999999766110438988702688776


No 27 
>PRK13589 flagellin; Provisional
Probab=100.00  E-value=0  Score=275.78  Aligned_cols=141  Identities=11%  Similarity=0.041  Sum_probs=135.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||-|+...-..+++|.+.+..|.+..+|||||+||++++|||++.+++.+||.++..|+|..+|..++.+.++++|++|
T Consensus         3 l~INtNi~alna~rnL~~~~~~l~~sleRLSSGlRINsA~DDAAGLaISermrsQI~GL~qA~rNAnDgISliQTAEGAL   82 (573)
T PRK13589          3 FRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAM   82 (573)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37956899999999999999999999987510065456330467889999999998889999984998999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCC
Q ss_conf             889999999999998513788898899999999986567777776520-0243041056654
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSS  144 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~  144 (357)
                      .+++++|+|||||+||++|++++++||.++..|+.+++++|.++++++ |+|++||-|....
T Consensus        83 ~Ev~~iLqRmRELAVQAAN~tns~~DR~alQ~Ei~qL~~EIdRIa~tT~FNg~kLLdGs~~~  144 (573)
T PRK13589         83 DEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFIN  144 (573)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEECCCCCC
T ss_conf             99999999999999997046899899999999999999999666121648999810688777


No 28 
>TIGR02550 flagell_flgL flagellar hook-associated protein 3; InterPro: IPR013384    FlgL (or HAP3) proteins are flagellar hook-associated proteins encoded in bacterial flagellar operons. An N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved in this family, though members show considerable length heterogeneity between these two well-conserved terminal regions - proteins in this family range from 287 to more than 500 residues in length. ; GO: 0001539 ciliary or flagellar motility, 0009424 flagellin-based flagellum hook.
Probab=100.00  E-value=4e-43  Score=257.23  Aligned_cols=349  Identities=14%  Similarity=0.121  Sum_probs=249.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32189999999999999999999999997202204642128999999999999999999999999999999999999888
Q gi|254780523|r    5 GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS   84 (357)
Q Consensus         5 ~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~   84 (357)
                      ||++.++|++....+...+.++.+.+.|++||||+..|+|||.++.+++.++...+.+++|.+|+..+.+||...|+.|.
T Consensus         1 r~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~g~~~~~~sddp~~~~~~~~~~~~~~~~~q~~~n~~~~~~~l~~~~~~l~   80 (393)
T TIGR02550         1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS   80 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96513567777777777777888877776420110244222578888887777777766666667777766665544444


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             89999999999998513788898899999999986567777776520-0243041056654432122333332-222222
Q gi|254780523|r   85 SMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDS-LAKKSF  162 (357)
Q Consensus        85 ~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~-~~~~~~  162 (357)
                      ++.+.+++++++++++.|+++++.+|..++.|+.+++++++.++|++ ..|+|+|+|.+.+++||........ .+....
T Consensus        81 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~e~~~~~~~l~~~an~~d~~g~y~f~g~~~~~~pf~~~~~~~~~~~~g~~  160 (393)
T TIGR02550        81 SVGDLLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLLSLANTKDGNGRYIFSGTKTDTPPFSEDGGGSGVTYAGDG  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45677888888887642255787789999999999998777641011357632204655565553214665431003653


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------C-------------------CCCCCCC----C
Q ss_conf             1000101345432224566532112333221001233444--------4-------------------4566543----2
Q gi|254780523|r  163 DQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLED--------K-------------------FSDDEYW----A  211 (357)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------------------~~~~~~~----~  211 (357)
                       ........................... .. ........        .                   .......    .
T Consensus       161 -~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (393)
T TIGR02550       161 -QRIVQVASSRSMPIGLPGDKVFMSIPN-DG-YVVNAAASQTDLLAAILVDTIGRYTFVDPLEAGLELLGVLANDAVSAT  237 (393)
T ss_pred             -CCCEEEECCCCCCCCCCCCHHCCCCCC-CC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             -000123023410134442001012443-32-211000112110000001101121111122220011000010100000


Q ss_pred             CEEECCCCCCCEEECCCCCCEEE---------EEECCCCHHHHHHHHHHHHCCCCCCC-CCC-HHHHHHHHHHHHHHHHH
Q ss_conf             00111566520000025641022---------32035310112333332100233445-551-13566777778999999
Q gi|254780523|r  212 NNWSNASDHNIKYRIKDTEGIDV---------SANVNMRGIRDIMFVAVIGTEFLSKN-LTD-GARNVLTKKMLSTVQQG  280 (357)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~a  280 (357)
                      ............. .........         ........+................. ... ......+...+..++.+
T Consensus       238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T TIGR02550       238 DIITESLEIGTTG-IKIKLNDELSSVLTGLAPPGNLEKSVFSTGDDLFAALKSLEDALSSGDQAAILAALSASLNELDKA  316 (393)
T ss_pred             CCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             0000000002121-123332100010001221001101210025789999887654202320356677777887667767


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             99999999986689999999999899999999986433327888999999999999999999999997368505209
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSILNYL  357 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL~dyL  357 (357)
                      .+.+...|+++|+++++++.....+......++..+++++|+|++++++++...+..++|++.+++++.++||||||
T Consensus       317 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~d~d~~~~i~~~~~~~~~~~a~~~~~~~~~~~sl~~~~  393 (393)
T TIGR02550       317 LDNVLSARAEVGARLNRLELLESRLSEQKLVLTEVLSDLEDVDLAEAISDLTMQQSALQAALKAFAKIQQLSLFDYL  393 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             76666655554335666666665434445566666555441026788888888899999999876665200222039


No 29 
>PRK12687 flagellin; Reviewed
Probab=100.00  E-value=3.4e-39  Score=235.38  Aligned_cols=297  Identities=10%  Similarity=0.056  Sum_probs=208.1

Q ss_pred             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61321899999999999999999999999972022046421289999999999999999999999999999999999998
Q gi|254780523|r    3 TTGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAH   82 (357)
Q Consensus         3 ~~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~   82 (357)
                      +++|.|+.-....+.+|...+..|.+.++|||||+||++|+|||++++++.+||.++..+++..+|++.+.+.+++++.+
T Consensus         1 M~sI~TN~~A~~A~~~L~~~~~~l~~s~~RLSTG~RInsA~DDAAglaIa~~mrs~~~gl~~a~~n~~~g~s~v~ta~~a   80 (311)
T PRK12687          1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTA   80 (311)
T ss_pred             CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97320339999999999998999999999853236335531218899999999988988999998887478999999999


Q ss_pred             HHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             8889----999999999998513788898899999999986567777776520-02430410566544321223333322
Q gi|254780523|r   83 LSSM----QKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSL  157 (357)
Q Consensus        83 L~~i----~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~  157 (357)
                      |.++    .++|.+++++++++.++   ..||..+..|+.++.+++.++++.. |+|..+|.+........ ........
T Consensus        81 l~~v~~~~~~~l~~l~~~~~~a~~~---~~Dr~~iq~E~~~L~~ei~~ia~~t~fNG~nlL~~~~~~~~~~-~~~~~~~~  156 (311)
T PRK12687         81 LTSVVGDSKSGLTALKAKLVAAREP---GIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDSSPSSYN-ATKSVVSS  156 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC-CCCCCCCC
T ss_conf             9988988999999999999854567---4138999999999999999999756534424304676444454-42100000


Q ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEE
Q ss_conf             22222100010134543222456653211233322100123344444566543200111566520000025641022320
Q gi|254780523|r  158 AKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSAN  237 (357)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (357)
                      .....                  ...............       ...+.... ..... ......     .....    
T Consensus       157 ~~~~~------------------g~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~-~~~~~~-----~~~~~----  200 (311)
T PRK12687        157 FTRVG------------------GTVAIKTIDVNIAKL-------ALYDTNGS-STTGI-LDKTVT-----VGTAT----  200 (311)
T ss_pred             EECCC------------------CCCEEEEEEEECHHH-------HHCCCCCC-CCCCC-HHHHHC-----CCCCC----
T ss_conf             00247------------------731000145311012-------10035664-31110-000000-----34332----


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             35310112333332100233445551135667777789999999999999998668999999999989999999998643
Q gi|254780523|r  238 VNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS  317 (357)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s  317 (357)
                      .            ...................+...+..||.+++.|...|+.+|+.++||++..+++.+..++++..++
T Consensus       201 ~------------~~~~~~~~~~~~~~~~~~~~~~~i~~id~Ai~~v~~~ra~lGA~~nRLe~~~~nl~~~~~nl~aa~g  268 (311)
T PRK12687        201 A------------SVSSIDIHLLTDSATDLTKLDGYIGIVDQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVG  268 (311)
T ss_pred             C------------CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2------------1001210110111445788987999999999999999998707899999999899999999998676


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3327888999999999999999999999997368
Q gi|254780523|r  318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +|+|+||++|.++|+++|+..|++.++.++..+.
T Consensus       269 rI~DADmA~Esa~l~k~QilqQag~amLaqANq~  302 (311)
T PRK12687        269 QLVDADMNAESTRLQALQTQQQLGIQALSIANQG  302 (311)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8756659999999999999999999999998457


No 30 
>pfam00669 Flagellin_N Bacterial flagellin N-terminal helical region. Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.
Probab=100.00  E-value=2.1e-33  Score=203.12  Aligned_cols=138  Identities=25%  Similarity=0.299  Sum_probs=134.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21899999999999999999999999972022046421289999999999999999999999999999999999998888
Q gi|254780523|r    6 ISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSS   85 (357)
Q Consensus         6 Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~   85 (357)
                      |+|++.+...+++|++.+.+|.++++||||||||++|+|||+++.++++|+.++..+++|.+|+..+.+||+.+|++|.+
T Consensus         1 I~tN~~a~~al~~l~~~~~~l~~~~~qlSTGkri~~~sDdp~~~~~~~~l~~~~~~~~q~~~N~~~a~~~l~~~e~al~~   80 (139)
T pfam00669         1 ISTNALALAARRTLNRNQAELQKAQEELSTGLRIDSALDLGAGTAISVSLRSQIRGLSQAVRNNNLGISRLQTAQGALSE   80 (139)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96519999999999999999999999987268457844269999999999999999999999899999999978899999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCC
Q ss_conf             999999999999851378889889999999998656777777652-0024304105665
Q gi|254780523|r   86 MQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINS  143 (357)
Q Consensus        86 i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~  143 (357)
                      |.+++.|+||+++++.|+++++++|.+++.|+.++++++..++|. .+.|.|+|+|+++
T Consensus        81 i~~~l~r~kel~v~a~n~~~~~~dr~ai~~Ei~~l~~~i~~~an~t~~nG~~lFsGt~T  139 (139)
T pfam00669        81 VTDILQRLRELAVQAANGGNSDIDRASAQAEIQQLTSELNNIANTTSFNGEYLFSGTNT  139 (139)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99999999999998846899999999999999999999999998577187301289696


No 31 
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=99.81  E-value=2.1e-19  Score=125.24  Aligned_cols=84  Identities=23%  Similarity=0.402  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             89999999999999998668999999999989999999998643332788899999999999999999999999736850
Q gi|254780523|r  274 LSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI  353 (357)
Q Consensus       274 ~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL  353 (357)
                      ++.||.++++|...|+++|+.++|++...++++....+++..+++++|+|++|++++|.+.|+.+||++++++|+.++||
T Consensus         1 i~~id~Ai~~v~~~ra~lGa~qnRl~~~~~~l~~~~~n~~~a~s~i~D~D~Aee~t~l~~~qil~qas~a~~aqanqlsl   80 (84)
T pfam00700         1 IDILDEAITQLTSQRSDLGAVQNRLESANTNLKNQSDNLKAAISRIEDVDPAEASTRVTKLQILLQASYALTAQANQLSL   80 (84)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             91889999999999998859999999999889999999999998866650999999999999999999999999867888


Q ss_pred             HHCC
Q ss_conf             5209
Q gi|254780523|r  354 LNYL  357 (357)
Q Consensus       354 ~dyL  357 (357)
                      +|||
T Consensus        81 ln~L   84 (84)
T pfam00700        81 LNLL   84 (84)
T ss_pred             HHHC
T ss_conf             8649


No 32 
>PRK12688 flagellin; Reviewed
Probab=98.45  E-value=1.9e-07  Score=58.72  Aligned_cols=102  Identities=11%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32189999999999999999999999997202204642128999999999999999999999999999999999999888
Q gi|254780523|r    5 GISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLS   84 (357)
Q Consensus         5 ~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~   84 (357)
                      .|-=+.--+|.+..|+.--.=|...|.||+||||++.+-|+|.-+..+..|..+.+.+....+-+..+...|+.+.+.+.
T Consensus         3 ~IvLS~avRQNLlSLQsTAdLLATTQsRLssGKKVNtALDNPTNFFTAagLdsRaSdInnLLDGI~NGVQilQAANTGIT   82 (888)
T PRK12688          3 GVVLSNAVRQNLSSLQATADLLATTQSRLSSGKKVNTALDNPTNFFTAASLDSRASDINNLLDGIGNGVQILQAANTGIT   82 (888)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCH
T ss_conf             34417888767777777899998877765236612212368753110012341045677777521225553345403606


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             8999999999999851378889
Q gi|254780523|r   85 SMQKIVQDMVGPLVILLEGKTD  106 (357)
Q Consensus        85 ~i~~~l~~~~~~~v~a~n~t~~  106 (357)
                      +.+++...+|..+.|+......
T Consensus        83 sL~kLvDsaKSIAnQALqt~~g  104 (888)
T PRK12688         83 SLNKLVDSAKSIANQALQTNVG  104 (888)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6899999899999987652036


No 33 
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.39  E-value=0.0064  Score=33.61  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +......+.+|...+..+...+..+.....++..+..+.++++-|+.++|-++|-.|||+-++.+-+.+|
T Consensus       379 ~~~~~lvs~ig~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLi~~Q~aY~AsArvitt~dem  448 (456)
T PRK07191        379 DAATALVGYIAITSNQNHSELENAENVRNQAERYWESFSGVNNDEEAMNLMEYQRAYQSNMKVIATGDKL  448 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999984658178999999999999999999999999999


No 34 
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=97.23  E-value=0.01  Score=32.52  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +......+.+|...+......+..+.....++..+..+.+|++-|+.++|-++|.+|||+-++..-+.+|
T Consensus       404 ~~~~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvitt~dem  473 (482)
T PRK07521        404 DLAASSLSWLEQQRSSASSEASYQSALLSRAQEALSNATGVDTDDEMALLLDLEQSYAASAKVISTVDEM  473 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999984138059999999999999999999999999999


No 35 
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.97  E-value=0.018  Score=31.11  Aligned_cols=66  Identities=9%  Similarity=0.010  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  286 EQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       286 ~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ...+.+|..........+........++..+..+.++++-|+.++|-++|-.|||+-++.+-+.+|
T Consensus       358 ~~v~~~~~~~~~a~~~~~~~~~~~~~~~~~r~svsGVnlDEE~~nLl~~QqaY~A~AkvIst~dem  423 (431)
T PRK06799        358 QFIVGVASDKSAVNAYQKIHTDLLEGIQQEKMSLEGVNMEEEMVNLMAFQKYFVANSKAITTMNEV  423 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999982538388899999999999999999999999999


No 36 
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.63  E-value=0.03  Score=29.86  Aligned_cols=71  Identities=10%  Similarity=0.023  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .+......+++|...+..+...+..+.....++..+..+.+|++-||.++|-++|-+|||+-++.+-+.+|
T Consensus       548 ~d~y~~lv~~vG~~~~~a~~~~~~~~~l~~~~~~~r~svSGVnlDEE~anLikfQqaY~AsArvIst~dem  618 (628)
T PRK06665        548 DDFFANTASNIGIKGQIAEITKNSQNQILKELTDMRQSVSGVNKDEELANMIEFQQSYNASAKFINVSNEL  618 (628)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999987636029999999999999999999999999999


No 37 
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=96.56  E-value=0.035  Score=29.47  Aligned_cols=70  Identities=10%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +......+++|......+...+..+.....++..+..+.+|.+-||.++|-++|-.|+|+-++..-+.+|
T Consensus       546 ~~y~~lvs~vG~~a~~a~~~~~~~~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvIttadem  615 (624)
T PRK12714        546 GALSGLTTSVGSAARAANYSADAQKVINDQAQASRDSISGVNLDEEAADMLKLQQAYQAAAQMISTADTM  615 (624)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999870306168999999999999999999999999999


No 38 
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.48  E-value=0.043  Score=29.02  Aligned_cols=71  Identities=11%  Similarity=0.027  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .+......+++|......+...+..+.....++..+..+.+|.+-||.++|-++|-+|+|+-++.+-+.+|
T Consensus       571 ~~~y~~~vs~iG~~a~~a~~~~~~q~~l~~~~~~~r~SvSGVnlDEEl~nLikyQqaY~AaArvItt~deM  641 (649)
T PRK06945        571 TGAYAQLVNDIGNKASQLKVSSAAQTALLTQITTAQQSVSGVNLDEEAANLLQYQQLYQANAKVIQTASTL  641 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999974406139999999999999999999999999999


No 39 
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.39  E-value=0.048  Score=28.72  Aligned_cols=71  Identities=11%  Similarity=-0.033  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .+......+++|..-+..+...+..+.....++..+..+.+|++-||.++|-++|-+|+|+-++..-+.+|
T Consensus       598 ~d~y~~lvs~vG~~a~~A~~~~~~q~~l~~~~~~~r~SvSGVnlDEE~anLikfQqaY~AaArvItt~deM  668 (676)
T PRK05683        598 TDAYGKLVERVGTLASQARADADATAAVLKQAQDSRDSLSGVSLDEEAANLIKFQQYYTASSQIIKAAQET  668 (676)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999985625039999999999999999999999999999


No 40 
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=96.21  E-value=0.061  Score=28.15  Aligned_cols=70  Identities=9%  Similarity=-0.030  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +.-....+++|...+..+...+..+.....++..+..+.++.+-||.++|-++|-+|||+-++.+-+.+|
T Consensus       571 d~Y~~lvs~vG~~t~~A~~~~~~~~~l~~q~~~~r~SvSGVNLDEE~aNLi~fQqaY~AsArvIsta~em  640 (649)
T PRK12715        571 DRYGSLLAEVGGRTNQAKTSFESADILHKQALDFQDSKSGVNLDEEGANLLVFQQAYQAAGKLMEISNQI  640 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999899999999999999860315168899999999999999999999999999


No 41 
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=96.10  E-value=0.07  Score=27.83  Aligned_cols=70  Identities=9%  Similarity=0.041  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      +......+.+|......+...+..+.....++..+..+.+||+.|+.++|-++|-.|||+-++.+-+.+|
T Consensus       418 ~~~~~~v~~vg~~~~~a~~~~~~~~~~~~~~~~~~~s~SGVnlDEE~~nLi~~Q~aYqAnAkvItt~dem  487 (500)
T PRK07739        418 DFYQSLIGKLGVDAQEANRMAENSEVLVDQVDNRRQSVSAVSLDEEMTNMIQFQHAYNAAARMITAIDEM  487 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999987129669999999999999999999999999999


No 42 
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=95.99  E-value=0.079  Score=27.53  Aligned_cols=71  Identities=8%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .+-.....+++|......+...+.-+.....++..+..+.+|++-|+.++|-++|-+|+|+-++..-+.+|
T Consensus       548 ~d~y~~lvs~iG~~~~~a~~~~~~~~~~~~~~~~~~~svSGVnlDEEl~nLikyQqaY~AaArvItt~dem  618 (626)
T PRK08871        548 IDLYHNLNTEVGLKKATATRLAEVARLEKEAAQSRVASISGVNLDEEAANMMKFQQAYMASSRIMQAANDT  618 (626)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999999860115039999999999999999999999999999


No 43 
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway .   The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=95.94  E-value=0.083  Score=27.42  Aligned_cols=74  Identities=11%  Similarity=0.010  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  278 QQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       278 ~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ....+......+.+|...++.+...+..+.....++..+..+.+|-+-||+++|-++|-.|+|+-++.+-+-+|
T Consensus       415 ~~~~~~y~~~~s~~g~~~~~a~~~~~~~~~~l~~~~~~~~s~sGVs~DEE~~~l~~~Q~~Y~A~ak~i~t~d~m  488 (495)
T TIGR02492       415 ESLDDFYASLVSQIGSDASQAESALEAQEALLNQLQEARSSISGVSLDEEMANLIQYQKAYQASAKVISTVDEM  488 (495)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             43899998877899999999888888899999999998876416679999999999998899999999999999


No 44 
>PRK12688 flagellin; Reviewed
Probab=95.83  E-value=0.093  Score=27.13  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13566777778999999999999999866899999999998999999999864333278889999999999999999999
Q gi|254780523|r  264 GARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYM  343 (357)
Q Consensus       264 ~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~  343 (357)
                      ..+.....+.+..|..+...+..+.+.+|+...-++..+++-++.+..|+..-+++.-+|..|+..+-+.+.+-..-+.+
T Consensus       792 Fidn~a~Nkvl~~lntAsstLrsqAsalGsNLsiVQ~RQDFsKnlInVLqTGssNLTlADtNEEAANSQALsTRqSiavS  871 (888)
T PRK12688        792 FIDNNATNAVLAKLSTASTTLRSQASAFGSNLSIVQARQDFSKSLINVLQTGSSNLTLADTNEEAANSQALSTRQSIAVS  871 (888)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             00141478899987777798887777634760356555577788888874476435224443555422455443578888


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780523|r  344 ITTK  347 (357)
Q Consensus       344 ~~a~  347 (357)
                      +.+-
T Consensus       872 ALsL  875 (888)
T PRK12688        872 ALSL  875 (888)
T ss_pred             HHHH
T ss_conf             8866


No 45 
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=95.59  E-value=0.12  Score=26.61  Aligned_cols=72  Identities=10%  Similarity=-0.003  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       280 a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ..+......+.+|...+..+...+..+.....++..+..+.+|++-|+.++|-++|-+|+|+-++.+-+.+|
T Consensus       468 ~~~~~~~~vs~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVnlDEE~~nLi~~Q~aY~AsArvist~dem  539 (547)
T PRK08147        468 FNDAYASLVSDVGNQTATLKTSSTTQANVVTQLTTQQQSVSGVNLDEEYGNLQRFQQYYLANAQVLQTASTL  539 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999999999999984317669999999999999999999999999999


No 46 
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=85.68  E-value=1.9  Score=19.85  Aligned_cols=70  Identities=10%  Similarity=-0.029  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999998668999999999989999999998643332788899999999999999999999999736
Q gi|254780523|r  281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK  350 (357)
Q Consensus       281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~  350 (357)
                      .+......+++|......+...+..+.....++..+..+.+|++-||.++|-++|-+|||+-++.+-+.+
T Consensus       533 ~~~y~~lvs~vG~~~~~a~~~~~~~~~~~~~~~~~r~svSGVnlDEE~~nLik~QqaY~AsArvista~e  602 (612)
T PRK08471        533 EEYYRFLTGKIASDTEKNNRINDTNKSLLNSVKKEYQSISGVSTDEELTNLIKFQSSYGAAAKIITTVDQ  602 (612)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999998510603999999999999999999999999999


No 47 
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=83.27  E-value=2.5  Score=19.24  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999986689999999999899999999986433327888999999999999999999999997368
Q gi|254780523|r  280 GLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       280 a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      -.+-.....+.+|...+..+...+..+.....++..+..+.++++-|+.++|.+.|-.|+|+-++...+.+|
T Consensus       472 ~~d~y~~l~~~i~~~~~~a~~~~~~~~~~l~~~~~~~~S~SGVnlDEE~anLi~~Qq~Y~AsAKvI~tvd~m  543 (552)
T COG1256         472 FSDYYAGLVGWIGIKASTASSESDAKEALLNQLTSERQSISGVNLDEEMANLIQFQQAYQASAKVIQTVDEM  543 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999888999998887411214799999999999860137787799999999999999999999999999


No 48 
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=75.55  E-value=4.3  Score=17.86  Aligned_cols=31  Identities=10%  Similarity=0.078  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7888999999999999999999999997368
Q gi|254780523|r  321 GVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       321 daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ++|+.++.++|-..|..|||..++......+
T Consensus         2 nV~~~~Em~~mi~~qr~yqa~~k~i~~~~em   32 (39)
T pfam06429         2 NVDLVEEMVNLIEAQRAYEANAKVIQTADEM   32 (39)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8878999999999999989999999889999


No 49 
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=63.05  E-value=8.4  Score=16.27  Aligned_cols=34  Identities=9%  Similarity=0.047  Sum_probs=23.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3327888999999999999999999999997368
Q gi|254780523|r  318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ..-++|+.++.++|-..+-.|||.+.++....+|
T Consensus        96 ~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m  129 (139)
T PRK05681         96 KYPNVNVVVEMVDMISASRSYEANVEVLNAAKSM  129 (139)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4289888999999999999999999999999999


No 50 
>pfam10498 IFT57 Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.01  E-value=8.8  Score=16.16  Aligned_cols=50  Identities=10%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             668999999999989999999998643332788899999999999999999
Q gi|254780523|r  291 LGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMS  341 (357)
Q Consensus       291 lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas  341 (357)
                      |--..+.+....+++...--.++.++..+..- |.+...+|...+..|+-.
T Consensus       239 L~kl~~d~~~~LekI~sREk~lN~ql~~~~~e-yr~~~~~l~~~~~~y~~~  288 (355)
T pfam10498       239 LKKLSQDLSKALEKISSREKHLNNQLEQLVQE-YREARRTLSQVQEKYNQA  288 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999988999998763899999-999999999999999999


No 51 
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=55.70  E-value=11  Score=15.54  Aligned_cols=35  Identities=9%  Similarity=0.077  Sum_probs=21.9

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             33327888999999999999999999999997368
Q gi|254780523|r  317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       317 s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      -..-++|+.++.++|-..+-.|||-..++...++|
T Consensus        95 V~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m  129 (138)
T PRK12631         95 IYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSM  129 (138)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             84489888999999999999999999999999999


No 52 
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=54.03  E-value=12  Score=15.38  Aligned_cols=33  Identities=9%  Similarity=0.059  Sum_probs=19.7

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             327888999999999999999999999997368
Q gi|254780523|r  319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       319 l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .-++|+.++.++|-..+-.|||.+.++...++|
T Consensus        88 ~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M  120 (130)
T PRK12632         88 GSNVDLVIEIADAREAQRSYEANLRMFDQARQM  120 (130)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899788999999999999999999999999999


No 53 
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=52.86  E-value=13  Score=15.27  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=21.7

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433327888999999999999999999999997368
Q gi|254780523|r  316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       316 ~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .-..-++|+.++.++|-..+-.|||...++...++|
T Consensus        93 yV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m  128 (138)
T PRK12782         93 YVKLPNVNMLIEMADMREANRSYEANLQVIKQARAM  128 (138)
T ss_pred             CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             854689888999999999999999999999999999


No 54 
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299   These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=49.97  E-value=11  Score=15.59  Aligned_cols=37  Identities=8%  Similarity=0.036  Sum_probs=27.0

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             3332788899999999999999999999999736850
Q gi|254780523|r  317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKLSI  353 (357)
Q Consensus       317 s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~SL  353 (357)
                      -.+=.+|+.+|+.+|-..+-.|||-++++...++|.+
T Consensus       104 V~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~  140 (147)
T TIGR01395       104 VKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLL  140 (147)
T ss_pred             EECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7058558543232112002478899999999999999


No 55 
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=46.92  E-value=16  Score=14.73  Aligned_cols=36  Identities=8%  Similarity=0.048  Sum_probs=21.5

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             433327888999999999999999999999997368
Q gi|254780523|r  316 ISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       316 ~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      .-..-++|+.++.++|-..+-.|||-+.++...++|
T Consensus        91 yV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m  126 (135)
T PRK12629         91 YVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKEL  126 (135)
T ss_pred             CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             884689888999999999999999999999999999


No 56 
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=45.02  E-value=17  Score=14.56  Aligned_cols=33  Identities=9%  Similarity=0.048  Sum_probs=17.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             332788899999999999999999999999736
Q gi|254780523|r  318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQK  350 (357)
Q Consensus       318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~  350 (357)
                      ..-++|+.++.++|-..+-.|||-+.++...++
T Consensus        98 ~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~  130 (141)
T PRK06802         98 FYPDVNVVSEMADMMSASRSFETNVEVLNSVKS  130 (141)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             468989899999999999999999999999999


No 57 
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=44.81  E-value=17  Score=14.54  Aligned_cols=35  Identities=9%  Similarity=0.005  Sum_probs=19.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             33327888999999999999999999999997368
Q gi|254780523|r  317 SKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       317 s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      -..=++|+.++.++|-..+-.|||-+.++...++|
T Consensus       100 V~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m  134 (143)
T PRK12630        100 VSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSM  134 (143)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             84689888999999999999999999999999999


No 58 
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=41.01  E-value=20  Score=14.20  Aligned_cols=34  Identities=9%  Similarity=0.112  Sum_probs=18.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3327888999999999999999999999997368
Q gi|254780523|r  318 KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL  351 (357)
Q Consensus       318 ~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~  351 (357)
                      ..-++|+.++.++|-..+-.|||-+.++...++|
T Consensus        98 ~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M  131 (140)
T PRK12628         98 YTSNINYVEEMANIISASRSYQMNIELLNTTKQL  131 (140)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3489888999999999999999999999999999


No 59 
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=40.08  E-value=20  Score=14.12  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=19.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      ||+-.+.++|...++.|||+++....
T Consensus        99 VD~d~Em~~~a~N~l~Yqas~~~Ln~  124 (135)
T PRK06797         99 VDVTTEMLDLMKANQLYGISINAINT  124 (135)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             57899999999999999999999825


No 60 
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=39.54  E-value=21  Score=14.07  Aligned_cols=46  Identities=9%  Similarity=0.011  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999986689999999999899999999986433327
Q gi|254780523|r  276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG  321 (357)
Q Consensus       276 ~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d  321 (357)
                      .|+..++.+...-+.+..+...|+....+++.++..++.++..+|.
T Consensus       606 ~l~~~l~~~~~~~G~i~~~~~~l~~~i~~~~~~i~~~~~rl~~~e~  651 (684)
T PRK06664        606 MLLEYLKPYTQAGGIVYNKVKSLDEKIANNNKKVEEYEKKLESRER  651 (684)
T ss_pred             HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999876568645306667999998999999999999999999


No 61 
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=38.11  E-value=22  Score=13.94  Aligned_cols=26  Identities=12%  Similarity=0.003  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      ||+.++..++...+..||++.+.+.+
T Consensus        89 Vdle~Em~~~aen~~~Y~~~~~~~~~  114 (126)
T PRK06004         89 VNLEDEMLKVSDNQMDYAAATSLYQK  114 (126)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             46999999999999999999999999


No 62 
>PRK06798 fliD flagellar capping protein; Validated
Probab=35.77  E-value=24  Score=13.73  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999986689999999999899999999986433327
Q gi|254780523|r  275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG  321 (357)
Q Consensus       275 ~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d  321 (357)
                      ..++..++.+....+-+..|...|+....+++.+...++.++..+++
T Consensus       361 ~~l~~~l~~~~~~~G~i~~r~~sl~~~i~~l~~q~~~l~~r~~~~~~  407 (440)
T PRK06798        361 KMMEKPLDKIFGDEGIIGERSKSIDSRVSKLDKKIKDIDTQNKQKQD  407 (440)
T ss_pred             HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998652889602207778999999999999999999999999


No 63 
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=33.80  E-value=26  Score=13.54  Aligned_cols=27  Identities=7%  Similarity=0.001  Sum_probs=22.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             278889999999999999999999999
Q gi|254780523|r  320 IGVEQHTAHAQLSTLINKIEMSYMITT  346 (357)
Q Consensus       320 ~daD~ae~~t~l~~~q~~~qas~~~~a  346 (357)
                      -.+|++++.++|=..|-.|||.-+++.
T Consensus       375 SNVDla~E~t~mI~~QRaYqANskvIt  401 (414)
T PRK05682        375 SNVDLTTELVDMIVAQRNYQANAKTIK  401 (414)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHEEEE
T ss_conf             017799999999999877467403456


No 64 
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=30.49  E-value=29  Score=13.23  Aligned_cols=25  Identities=4%  Similarity=-0.019  Sum_probs=12.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITT  346 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a  346 (357)
                      ||+.++.++|...++.||++.+...
T Consensus        99 Vdle~Em~~~a~N~l~Y~a~~~~l~  123 (137)
T PRK05680         99 VDMDVERTEFAKNSLMYQALLTALN  123 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             0879999999999999999999999


No 65 
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=29.40  E-value=31  Score=13.12  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788899999999999999999999999
Q gi|254780523|r  321 GVEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       321 daD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      .||+-++.++|...++.||+..+..+.
T Consensus        99 nVDid~Em~~la~N~l~Y~al~~~l~~  125 (135)
T PRK12622         99 NVDIDSEMKALVQNQMMYHLFTNIQAH  125 (135)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             758899999999999999999999998


No 66 
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=28.96  E-value=31  Score=13.08  Aligned_cols=26  Identities=8%  Similarity=0.001  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      ||+-++.++|...++.||++.+...+
T Consensus        97 Vdid~Em~~la~N~l~Y~a~~~~l~~  122 (136)
T PRK12621         97 VNLDKEMAKMAKNSLQYNALTTVIKG  122 (136)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65489999999999999999999999


No 67 
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=27.78  E-value=33  Score=12.96  Aligned_cols=25  Identities=4%  Similarity=-0.129  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITT  346 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a  346 (357)
                      +|+-++.++|...++.||+..+..+
T Consensus        96 VDid~Em~~laeN~l~Y~a~~~~l~  120 (131)
T PRK12623         96 VDIDNEMVNQAANTLMYNALITQLN  120 (131)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7799999999999999999999999


No 68 
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=26.80  E-value=34  Score=12.85  Aligned_cols=25  Identities=8%  Similarity=-0.070  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITT  346 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a  346 (357)
                      ||+-++.++|...++.||+..+..+
T Consensus       106 VDid~Em~~la~N~l~Y~al~~~l~  130 (143)
T PRK12624        106 VDVEKEVVEASNSQMQYMLMIERLN  130 (143)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6899999999999999999999999


No 69 
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=26.77  E-value=34  Score=12.85  Aligned_cols=16  Identities=13%  Similarity=-0.010  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998
Q gi|254780523|r  275 STVQQGLSGIIEQRAV  290 (357)
Q Consensus       275 ~~l~~a~~~i~~~~a~  290 (357)
                      ..|.+.+..+....+.
T Consensus       373 ~yL~e~l~~~r~al~~  388 (457)
T PRK13723        373 QYIQELIQQARAMLAT  388 (457)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999862


No 70 
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=26.73  E-value=35  Score=12.85  Aligned_cols=28  Identities=7%  Similarity=0.119  Sum_probs=17.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999999999999999999973
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITTKLQ  349 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a~i~  349 (357)
                      ||+.++..++...+..|+++.+.+.+-.
T Consensus        90 V~le~Em~~~aen~~~Y~~~~~l~~~~~  117 (126)
T PRK06003         90 VSLEQEMMKAGEINRDYSLNTAIVKSFH  117 (126)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5799999999999999999999999999


No 71 
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=26.48  E-value=35  Score=12.82  Aligned_cols=15  Identities=0%  Similarity=-0.079  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780523|r  327 AHAQLSTLINKIEMS  341 (357)
Q Consensus       327 ~~t~l~~~q~~~qas  341 (357)
                      +..++...+..||++
T Consensus        96 Em~~~aen~~~Y~~~  110 (128)
T PRK12627         96 EMLRSAEAKRQHDRA  110 (128)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 72 
>PRK08724 fliD flagellar capping protein; Validated
Probab=26.38  E-value=35  Score=12.81  Aligned_cols=46  Identities=13%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999986689999999999899999999986433327
Q gi|254780523|r  276 TVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIG  321 (357)
Q Consensus       276 ~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~d  321 (357)
                      .++..++.....-+.+-.|.+.|.....++..+...++.++..+|.
T Consensus       613 ~l~~~i~~~~~~~G~i~~r~~sl~~~~~~l~d~~~~l~~Rm~~~e~  658 (686)
T PRK08724        613 RVEDAIQSMTGVTGSIRTREKSLREQNYRLNDDQVALDRRMESLEK  658 (686)
T ss_pred             HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999987631678546446767999998889899999999999999


No 73 
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=25.54  E-value=36  Score=12.72  Aligned_cols=28  Identities=18%  Similarity=0.036  Sum_probs=19.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2788899999999999999999999999
Q gi|254780523|r  320 IGVEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       320 ~daD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      =.||+-++.++|...++.||++.+...+
T Consensus        77 N~Vdld~Em~~~aeN~l~Y~a~~~~l~~  104 (116)
T PRK12685         77 NTVELGKEQARYSQNAMDYQTSLTFLNM  104 (116)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8537899999999999999999999999


No 74 
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=23.93  E-value=39  Score=12.54  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8889999999999999999999999
Q gi|254780523|r  322 VEQHTAHAQLSTLINKIEMSYMITT  346 (357)
Q Consensus       322 aD~ae~~t~l~~~q~~~qas~~~~a  346 (357)
                      ||+-++.++|...++.||++.+...
T Consensus        95 Vdid~Em~~~aeN~l~Y~a~~~~l~  119 (132)
T PRK12625         95 VDIQQEQSAFMQNALEYQMSLGFLD  119 (132)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1479999999999999999999999


No 75 
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.73  E-value=41  Score=12.41  Aligned_cols=32  Identities=6%  Similarity=0.007  Sum_probs=26.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32788899999999999999999999999736
Q gi|254780523|r  319 SIGVEQHTAHAQLSTLINKIEMSYMITTKLQK  350 (357)
Q Consensus       319 l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~  350 (357)
                      --.+|+.+++++|-..|-+||+..++....-+
T Consensus       220 ~SNV~~~~EMv~li~~qRaye~n~k~i~t~De  251 (261)
T PRK12817        220 NSNVDLGKEMTDMIITQRAFQLSSKGIKTADE  251 (261)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12173999999999999999999899999999


No 76 
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.26  E-value=44  Score=12.24  Aligned_cols=70  Identities=10%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999986689999999999899999999986433327888999999999999999999999
Q gi|254780523|r  275 STVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMIT  345 (357)
Q Consensus       275 ~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~  345 (357)
                      ..+...++.....-+.+..+...++.....++.++..++.++..+|+. |.+-.+.|......+|+....+
T Consensus       389 ~~~~~~l~~~~~~~G~i~~~~~~l~~~i~~l~~~i~~l~~rl~~~e~~-~~~QFtame~~~~~mnsq~s~L  458 (463)
T PRK08032        389 TQIATNLKSWLSTTGIIKAATDGVNKTLKKLTKQYNAVSDSIDATVAR-YKAQFTQLDKMMTSLNSTSSYL  458 (463)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998757897201576679999999999999999999999999-9999999999999999899999


No 77 
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=20.50  E-value=46  Score=12.14  Aligned_cols=19  Identities=26%  Similarity=0.226  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHH--HHHH
Q ss_conf             999999865677777--7652
Q gi|254780523|r  112 INAGMLRDSYESFVT--FANM  130 (357)
Q Consensus       112 ~~a~e~~~~~~~l~~--~aN~  130 (357)
                      ..+-.++..+.+++.  +||.
T Consensus        13 ~~aL~lR~~RqevlAsNIANa   33 (148)
T PRK07182         13 PMAMQLRLTRAELLSANLANV   33 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999998612216


No 78 
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=20.17  E-value=47  Score=12.10  Aligned_cols=30  Identities=13%  Similarity=0.135  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             278889999999999999999999999973
Q gi|254780523|r  320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQ  349 (357)
Q Consensus       320 ~daD~ae~~t~l~~~q~~~qas~~~~a~i~  349 (357)
                      -.+|+.+++++|-..|-+||+..++....-
T Consensus       209 SNVd~~~EM~~lI~~qRaye~n~K~i~~~D  238 (252)
T PRK12641        209 SNVNLEKNMIEMISNARQFEMQMKIISMCD  238 (252)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             446699999999999999999999999999


Done!