HHsearch alignment of GI: 254780523 and MMDB domain: 1io1_A_1-117_348-398

>1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium}
Probab=99.96  E-value=9.5e-28  Score=171.33  Aligned_cols=166  Identities=10%  Similarity=0.035  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Q ss_conf             99999999999999999999999999988889999999999998513788898899999999986567777776520-02
Q gi|254780523|r   55 WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DE  133 (357)
Q Consensus        55 l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~  133 (357)
                      |+.++.++++|.+|+..+.+||+++|++|.++.++|+|+||++++++||+++++||.+++.|+.++++++.+++|++ ++
T Consensus         1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn   80 (168)
T 1io1_A            1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN   80 (168)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             94166659999998999999999999999999999999999999850578999999999999999999999999736208


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             43041056654432122333332222222100010134543222456653211233322100123344444566543200
Q gi|254780523|r  134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN  213 (357)
Q Consensus       134 g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (357)
                      |.|+|.|.....+||....................                                             
T Consensus        81 G~~Lf~Gs~t~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  115 (168)
T 1io1_A           81 GVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTL---------------------------------------------  115 (168)
T ss_dssp             TBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTTT---------------------------------------------
T ss_pred             CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCC---------------------------------------------
T ss_conf             80112567725897237765313653143320103---------------------------------------------


Q ss_pred             EECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11156652000002564102232035310112333332100233445551135667777789999999999999998668
Q gi|254780523|r  214 WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI  293 (357)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa  293 (357)
                                                                        .........++..||.++..|...|+.+|+
T Consensus       116 --------------------------------------------------~~t~~~a~~~~~~~d~a~~~v~~~r~~lga  145 (168)
T 1io1_A          116 --------------------------------------------------GLAATTTENPLQKIDAALAQVDTLRSDLAA  145 (168)
T ss_dssp             --------------------------------------------------TCCCSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------------------------------------------544788999999999999999999987658


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999899999999986
Q gi|254780523|r  294 SEKNINEERVFLQNKNNIIDTY  315 (357)
Q Consensus       294 ~~~~l~~~~~~l~~~~~~l~~~  315 (357)
                      .|||||+....+....++++..
T Consensus       146 ~qnr~~~t~~nl~~~~~n~~~a  167 (168)
T 1io1_A          146 VQNRFNSAITNLGNTVNNLTSA  167 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9885899999899999999851