HHsearch alignment of GI: 254780523 and MMDB domain: 1io1_A_1-117_348-398
>1io1_A (A:1-117,A:348-398) Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium}
Probab=99.96 E-value=9.5e-28 Score=171.33 Aligned_cols=166 Identities=10% Similarity=0.035 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Q ss_conf 99999999999999999999999999988889999999999998513788898899999999986567777776520-02
Q gi|254780523|r 55 WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DE 133 (357)
Q Consensus 55 l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~ 133 (357)
|+.++.++++|.+|+..+.+||+++|++|.++.++|+|+||++++++||+++++||.+++.|+.++++++.+++|++ ++
T Consensus 1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn 80 (168)
T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 94166659999998999999999999999999999999999999850578999999999999999999999999736208
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 43041056654432122333332222222100010134543222456653211233322100123344444566543200
Q gi|254780523|r 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN 213 (357)
Q Consensus 134 g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (357)
|.|+|.|.....+||....................
T Consensus 81 G~~Lf~Gs~t~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 115 (168)
T 1io1_A 81 GVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTL--------------------------------------------- 115 (168)
T ss_dssp TBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTTT---------------------------------------------
T ss_pred CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCC---------------------------------------------
T ss_conf 80112567725897237765313653143320103---------------------------------------------
Q ss_pred EECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11156652000002564102232035310112333332100233445551135667777789999999999999998668
Q gi|254780523|r 214 WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa 293 (357)
.........++..||.++..|...|+.+|+
T Consensus 116 --------------------------------------------------~~t~~~a~~~~~~~d~a~~~v~~~r~~lga 145 (168)
T 1io1_A 116 --------------------------------------------------GLAATTTENPLQKIDAALAQVDTLRSDLAA 145 (168)
T ss_dssp --------------------------------------------------TCCCSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------------------------------------------544788999999999999999999987658
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999899999999986
Q gi|254780523|r 294 SEKNINEERVFLQNKNNIIDTY 315 (357)
Q Consensus 294 ~~~~l~~~~~~l~~~~~~l~~~ 315 (357)
.|||||+....+....++++..
T Consensus 146 ~qnr~~~t~~nl~~~~~n~~~a 167 (168)
T 1io1_A 146 VQNRFNSAITNLGNTVNNLTSA 167 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9885899999899999999851