HHsearch alignment of GI: 254780523 and MMDB domain: 1ucu_A_41-169_400-454

>1ucu_A (A:41-169,A:400-454) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=100.00  E-value=3.5e-32  Score=195.99  Aligned_cols=183  Identities=10%  Similarity=0.021  Sum_probs=156.6

Q ss_pred             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             12899999999999999999999999999999999999988889999999999998513788898899999999986567
Q gi|254780523|r   43 LQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE  122 (357)
Q Consensus        43 sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~  122 (357)
                      ||||++++++.+|+.++.++++|.+|++.+.+||+++|++|.++.++|+|+|+++++++||+++++||.+++.|+.++++
T Consensus         1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~   80 (184)
T 1ucu_A            1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN   80 (184)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             10699999999999999999999999999999999999999999999999999999761688765668888877555555


Q ss_pred             HHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77777652-00243041056654432122333332222222100010134543222456653211233322100123344
Q gi|254780523|r  123 SFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE  201 (357)
Q Consensus       123 ~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (357)
                      +|.+++|. .++|.|+|.|.....+||...................                                  
T Consensus        81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~~~~~~~~~~----------------------------------  126 (184)
T 1ucu_A           81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQT----------------------------------  126 (184)
T ss_dssp             HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTT----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCC----------------------------------
T ss_conf             5555542456655432144554315521444411231033333222----------------------------------


Q ss_pred             CCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             44456654320011156652000002564102232035310112333332100233445551135667777789999999
Q gi|254780523|r  202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL  281 (357)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  281 (357)
                                                                                   ..........++..||.++
T Consensus       127 -------------------------------------------------------------~~~~~~~a~~~~~~~d~ai  145 (184)
T 1ucu_A          127 -------------------------------------------------------------LGLAATTTENPLQKIDAAL  145 (184)
T ss_dssp             -------------------------------------------------------------TTCCCSCCSSHHHHHHHHH
T ss_pred             -------------------------------------------------------------CCCHHHHHHHHHHHHHHHH
T ss_conf             -------------------------------------------------------------3324788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999998668999999999989999999998643332
Q gi|254780523|r  282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI  320 (357)
Q Consensus       282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~  320 (357)
                      ..|...|+++|+.||||++....|....++++...|+||
T Consensus       146 ~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~  184 (184)
T 1ucu_A          146 AQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999879999999999999999999999854687