HHsearch alignment of GI: 254780523 and MMDB domain: 1ucu_A_41-169_400-454
>1ucu_A (A:41-169,A:400-454) Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium}
Probab=100.00 E-value=3.5e-32 Score=195.99 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=156.6
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12899999999999999999999999999999999999988889999999999998513788898899999999986567
Q gi|254780523|r 43 LQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122 (357)
Q Consensus 43 sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~ 122 (357)
||||++++++.+|+.++.++++|.+|++.+.+||+++|++|.++.++|+|+|+++++++||+++++||.+++.|+.++++
T Consensus 1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~ 80 (184)
T 1ucu_A 1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 80 (184)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10699999999999999999999999999999999999999999999999999999761688765668888877555555
Q ss_pred HHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777652-00243041056654432122333332222222100010134543222456653211233322100123344
Q gi|254780523|r 123 SFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201 (357)
Q Consensus 123 ~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (357)
+|.+++|. .++|.|+|.|.....+||...................
T Consensus 81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 126 (184)
T 1ucu_A 81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQT---------------------------------- 126 (184)
T ss_dssp HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCC----------------------------------
T ss_conf 5555542456655432144554315521444411231033333222----------------------------------
Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44456654320011156652000002564102232035310112333332100233445551135667777789999999
Q gi|254780523|r 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281 (357)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 281 (357)
..........++..||.++
T Consensus 127 -------------------------------------------------------------~~~~~~~a~~~~~~~d~ai 145 (184)
T 1ucu_A 127 -------------------------------------------------------------LGLAATTTENPLQKIDAAL 145 (184)
T ss_dssp -------------------------------------------------------------TTCCCSCCSSHHHHHHHHH
T ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHHHH
T ss_conf -------------------------------------------------------------3324788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999998668999999999989999999998643332
Q gi|254780523|r 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320 (357)
Q Consensus 282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~ 320 (357)
..|...|+++|+.||||++....|....++++...|+||
T Consensus 146 ~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~ 184 (184)
T 1ucu_A 146 AQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999879999999999999999999999854687