Query gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] Match_columns 357 No_of_seqs 142 out of 3151 Neff 10.7 Searched_HMMs 33803 Date Wed Jun 1 18:19:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780523.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2d4x_A Flagellar HOOK-associa 100.0 7.7E-34 2.3E-38 205.2 17.3 247 42-327 1-248 (248) 2 >1ucu_A Phase 1 flagellin; fla 100.0 3.5E-32 1E-36 196.0 20.5 183 43-320 1-184 (184) 3 >1io1_A Phase 1 flagellin; bet 100.0 9.5E-28 2.8E-32 171.3 15.5 166 55-315 1-167 (168) 4 >2zbi_A Flagellin homolog; fla 100.0 1.6E-27 4.8E-32 170.0 15.9 168 57-319 2-170 (174) 5 >1ory_B Flagellin; flagellar c 97.3 0.00012 3.4E-09 42.9 2.4 45 307-351 2-46 (55) 6 >1ucu_A Phase 1 flagellin; fla 96.8 0.0033 9.7E-08 34.9 6.1 42 4-45 2-43 (80) 7 >1ucu_A Phase 1 flagellin; fla 96.1 0.018 5.4E-07 30.7 6.3 55 297-351 16-71 (80) 8 >2d4y_A HAP1, flagellar HOOK-a 92.0 0.55 1.6E-05 22.5 13.7 93 39-131 57-152 (376) 9 >3bj4_A Potassium voltage-gate 19.5 42 0.0012 12.0 4.4 27 290-316 14-40 (49) 10 >3hfe_A Potassium voltage-gate 15.7 52 0.0015 11.5 3.1 20 290-309 7-26 (31) No 1 >>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} (A:) Probab=100.00 E-value=7.7e-34 Score=205.20 Aligned_cols=247 Identities=14% Similarity=0.105 Sum_probs=174.5 Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 21289999999999999999999999999999999999998888999999999999851378889889999999998656 Q gi|254780523|r 42 GLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSY 121 (357) Q Consensus 42 ~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~ 121 (357) -||||+++.++++|+.+++++++|.+|+..+.+||+++|++|.++.++|+|+|+++++++||++++++|.+++.|+.+++ T Consensus 1 ~SDDp~~~~~a~~l~~~~~~~~q~~~Ni~~a~~~l~~ae~aL~~i~~~l~~~k~l~vqa~ngt~s~~dr~~i~~ei~~l~ 80 (248) T 2d4x_A 1 MSDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIR 80 (248) T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 99688999999999999999999999999999999999999999999999999999975147765222899988999988 Q ss_pred HHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 777777652-0024304105665443212233333222222210001013454322245665321123332210012334 Q gi|254780523|r 122 ESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQL 200 (357) Q Consensus 122 ~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (357) +++.+++|+ +++|.|+|+|.....+||................................. ....... T Consensus 81 ~~i~~~an~t~~~g~~lf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 148 (248) T 2d4x_A 81 DQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQQVDSARTMVIGHTGAQI------------FNSITSN 148 (248) T ss_dssp HHHHHHHTCBCTTSCBTTSTTCTTSCSBCTTTCCBCSCSSCEEEECSSSCEEEESCCHHHH------------HSCCCTT T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH------------HCCCCCC T ss_conf 9999998621024531125755466530046754435332111123544322224332011------------0133312 Q ss_pred CCCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 44445665432001115665200000256410223203531011233333210023344555113566777778999999 Q gi|254780523|r 201 EDKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280 (357) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 280 (357) ..............................................+..++.+ T Consensus 149 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (248) T 2d4x_A 149 ---------------------------AVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNS 201 (248) T ss_dssp ---------------------------CCCCTTSCCCCCCHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHHHHH T ss_pred ---------------------------CCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf ---------------------------22222322100023444200000100000000001110001112234678999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999999986689999999999899999999986433327888999 Q gi|254780523|r 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327 (357) Q Consensus 281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~ 327 (357) ++.+...++.+|++++|++...+.+.....++++.+++++|+|++++ T Consensus 202 ~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~s~i~d~D~a~v 248 (248) T 2d4x_A 202 LNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVDVDWNSV 248 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999998299999999999899999999999888763283259 No 2 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:41-169,A:400-454) Probab=100.00 E-value=3.5e-32 Score=195.99 Aligned_cols=183 Identities=10% Similarity=0.021 Sum_probs=156.6 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 12899999999999999999999999999999999999988889999999999998513788898899999999986567 Q gi|254780523|r 43 LQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122 (357) Q Consensus 43 sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~ 122 (357) ||||++++++.+|+.++.++++|.+|++.+.+||+++|++|.++.++|+|+|+++++++||+++++||.+++.|+.++++ T Consensus 1 SDDpa~~a~s~~l~s~i~~l~q~~~N~~~a~s~lqtae~aL~~i~~iLqrirelavqaangt~s~~dR~ai~~Ei~~L~~ 80 (184) T 1ucu_A 1 KDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLN 80 (184) T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 10699999999999999999999999999999999999999999999999999999761688765668888877555555 Q ss_pred HHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 77777652-00243041056654432122333332222222100010134543222456653211233322100123344 Q gi|254780523|r 123 SFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201 (357) Q Consensus 123 ~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (357) +|.+++|. .++|.|+|.|.....+||................... T Consensus 81 ei~~ian~T~fnG~~Lf~Gs~~~t~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 126 (184) T 1ucu_A 81 EIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQINSQT---------------------------------- 126 (184) T ss_dssp HHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTT---------------------------------- T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCCC---------------------------------- T ss_conf 5555542456655432144554315521444411231033333222---------------------------------- Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 44456654320011156652000002564102232035310112333332100233445551135667777789999999 Q gi|254780523|r 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGL 281 (357) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 281 (357) ..........++..||.++ T Consensus 127 -------------------------------------------------------------~~~~~~~a~~~~~~~d~ai 145 (184) T 1ucu_A 127 -------------------------------------------------------------LGLAATTTENPLQKIDAAL 145 (184) T ss_dssp -------------------------------------------------------------TTCCCSCCSSHHHHHHHHH T ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHHHH T ss_conf -------------------------------------------------------------3324788999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999998668999999999989999999998643332 Q gi|254780523|r 282 SGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSI 320 (357) Q Consensus 282 ~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~ 320 (357) ..|...|+++|+.||||++....|....++++...|+|| T Consensus 146 ~~~~~~r~~lga~qnrl~~~~~nl~~~~~n~~~a~s~i~ 184 (184) T 1ucu_A 146 AQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIE 184 (184) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999879999999999999999999999854687 No 3 >>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} (A:1-117,A:348-398) Probab=99.96 E-value=9.5e-28 Score=171.33 Aligned_cols=166 Identities=10% Similarity=0.035 Sum_probs=138.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CC Q ss_conf 99999999999999999999999999988889999999999998513788898899999999986567777776520-02 Q gi|254780523|r 55 WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANMT-DE 133 (357) Q Consensus 55 l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~ 133 (357) |+.++.++++|.+|+..+.+||+++|++|.++.++|+|+||++++++||+++++||.+++.|+.++++++.+++|++ ++ T Consensus 1 lrsqi~~l~q~~~N~~da~s~lqtAe~aL~~i~~iL~rirelavqaaNgt~s~~DR~ai~~Ei~qL~~eI~~ianst~fn 80 (168) T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (168) T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 94166659999998999999999999999999999999999999850578999999999999999999999999736208 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 43041056654432122333332222222100010134543222456653211233322100123344444566543200 Q gi|254780523|r 134 GQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANN 213 (357) Q Consensus 134 g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (357) |.|+|.|.....+||.................... T Consensus 81 G~~Lf~Gs~t~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 115 (168) T 1io1_A 81 GVKVLAQDNTLTIQVGANDGETIDIDLKQINSQTL--------------------------------------------- 115 (168) T ss_dssp TBCTTTSCEEEEEECSSSTTCEEEEEECCCSTTTT--------------------------------------------- T ss_pred CCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCC--------------------------------------------- T ss_conf 80112567725897237765313653143320103--------------------------------------------- Q ss_pred EECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11156652000002564102232035310112333332100233445551135667777789999999999999998668 Q gi|254780523|r 214 WSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGI 293 (357) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa 293 (357) .........++..||.++..|...|+.+|+ T Consensus 116 --------------------------------------------------~~t~~~a~~~~~~~d~a~~~v~~~r~~lga 145 (168) T 1io1_A 116 --------------------------------------------------GLAATTTENPLQKIDAALAQVDTLRSDLAA 145 (168) T ss_dssp --------------------------------------------------TCCCSCCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf --------------------------------------------------544788999999999999999999987658 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999899999999986 Q gi|254780523|r 294 SEKNINEERVFLQNKNNIIDTY 315 (357) Q Consensus 294 ~~~~l~~~~~~l~~~~~~l~~~ 315 (357) .|||||+....+....++++.. T Consensus 146 ~qnr~~~t~~nl~~~~~n~~~a 167 (168) T 1io1_A 146 VQNRFNSAITNLGNTVNNLTSA 167 (168) T ss_dssp HHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHC T ss_conf 9885899999899999999851 No 4 >>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A {Sphingomonas SP} (A:1-113,A:232-292) Probab=99.96 E-value=1.6e-27 Score=170.04 Aligned_cols=168 Identities=12% Similarity=0.105 Sum_probs=141.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC Q ss_conf 99999999999999999999999998888999999999999851378889889999999998656777777652-00243 Q gi|254780523|r 57 QEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQ 135 (357) Q Consensus 57 ~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~ 135 (357) .++.++++|.+|+..+.+||+++|++|.++.++|+|+|+++++++||+++++||.+++.|+.+++++|.+++|+ .++|. T Consensus 2 sqi~~l~q~~rN~~da~s~lqtAe~aL~~i~~iLqrireLavQAaNgt~s~~Dr~ai~~Ei~qL~~eI~~ian~T~fnG~ 81 (174) T 2zbi_A 2 AQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQ 81 (174) T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 05666999998799999999999999999999999999999987257999999999999999999999999985223276 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 04105665443212233333222222210001013454322245665321123332210012334444456654320011 Q gi|254780523|r 136 YLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYWANNWS 215 (357) Q Consensus 136 ~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (357) |+|.|.....+||.....+........ T Consensus 82 ~Lf~Gs~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 108 (174) T 2zbi_A 82 KLLDGSFNGVQFQIGANAGETIGVSKI----------------------------------------------------- 108 (174) T ss_dssp ESSBSCCCEEEEECSSSTTCEEEEECC----------------------------------------------------- T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHC----------------------------------------------------- T ss_conf 644332100011100000023322101----------------------------------------------------- Q ss_pred CCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15665200000256410223203531011233333210023344555113566777778999999999999999866899 Q gi|254780523|r 216 NASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFVAVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISE 295 (357) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~ 295 (357) .....+.........++..||.++..|...|+.+|+.| T Consensus 109 ------------------------------------------~~~~~~v~t~~~a~~ai~~id~ai~~v~~~r~~lGa~q 146 (174) T 2zbi_A 109 ------------------------------------------XNAQTTVSSFTNAQQTITQIDNALKDINTARADLGAVQ 146 (174) T ss_dssp ------------------------------------------CBCSTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred ------------------------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ------------------------------------------34222301177799999999999999999999875799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999998999999999864333 Q gi|254780523|r 296 KNINEERVFLQNKNNIIDTYISKS 319 (357) Q Consensus 296 ~~l~~~~~~l~~~~~~l~~~~s~l 319 (357) ||||.....+....++++...|.- T Consensus 147 nrl~~t~~nl~~~~~n~~aa~S~~ 170 (174) T 2zbi_A 147 NRFTSTVANLQSXTENLSSALEHH 170 (174) T ss_dssp HHHHHHHC---------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999998630 No 5 >>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Probab=97.31 E-value=0.00012 Score=42.94 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999986433327888999999999999999999999997368 Q gi|254780523|r 307 NKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357) Q Consensus 307 ~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357) +..++++...|.|+|+|+++++++|.+.++..|++..+.++..+. T Consensus 2 ~~~~N~~aA~SrI~DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~ 46 (55) T 1ory_B 2 VAKDNTDNAESIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANAL 46 (55) T ss_dssp --------------CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 268789999846540559999999999999999999999998526 No 6 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=96.83 E-value=0.0033 Score=34.86 Aligned_cols=42 Identities=12% Similarity=-0.075 Sum_probs=34.1 Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 132189999999999999999999999997202204642128 Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQL 45 (357) Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sdd 45 (357) ++|.|+...-...+++...+..+.+..++||||.||+++--| T Consensus 2 m~In~Ni~alna~r~l~~~~~~l~~sm~rLSSG~RINsADaD 43 (80) T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSADSD 43 (80) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCCC T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHCH T ss_conf 199740999999999999999999999986114864782131 No 7 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=96.10 E-value=0.018 Score=30.71 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=39.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999989999999998643-3327888999999999999999999999997368 Q gi|254780523|r 297 NINEERVFLQNKNNIIDTYIS-KSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357) Q Consensus 297 ~l~~~~~~l~~~~~~l~~~~s-~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357) .+......+....+.+.+++- +--|+|+|+++++|.+.++..|++..+.++..++ T Consensus 16 ~l~~~~~~l~~sm~rLSSG~RINsADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~ 71 (80) T 1ucu_A 16 NLNKSQSALGTAIERLSSGLRINSADSDYATEVSNMSRAQILQQAGTSVLAQANQV 71 (80) T ss_dssp HHHHHHHHHHHHHHHHHTSCCTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999861148647821319999999999999999999999997416 No 8 >>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463) Probab=91.99 E-value=0.55 Score=22.49 Aligned_cols=93 Identities=8% Similarity=-0.084 Sum_probs=59.6 Q ss_pred CCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHH Q ss_conf 4642128999999999999999999999999999999-99999988889999999999998513--78889889999999 Q gi|254780523|r 39 SDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKR-LSTSQAHLSSMQKIVQDMVGPLVILL--EGKTDNNKFPINAG 115 (357) Q Consensus 39 i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~-l~~~e~~L~~i~~~l~~~~~~~v~a~--n~t~~~~d~~~~a~ 115 (357) ...|.+.+.....+.+.+.-..++.+....+...... -......+.+|+.++.++-++=.+-. .+.....+...+.. T Consensus 57 s~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~l~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndLlD 136 (376) T 2d4y_A 57 VSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLD 136 (376) T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHH T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 86879889999999999999999999999999999999999999999999999999999999999861468999067789 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9986567777776520 Q gi|254780523|r 116 MLRDSYESFVTFANMT 131 (357) Q Consensus 116 e~~~~~~~l~~~aN~~ 131 (357) +-.+++++|-.+..-+ T Consensus 137 qRD~ll~eLS~~i~i~ 152 (376) T 2d4y_A 137 QRDQLVSELNKIVGVE 152 (376) T ss_dssp HHHHHHHHHHHHSCEE T ss_pred HHHHHHHHHHHHCCCE T ss_conf 9999999987660704 No 9 >>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} (A:) Probab=19.49 E-value=42 Score=12.02 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 866899999999998999999999864 Q gi|254780523|r 290 VLGISEKNINEERVFLQNKNNIIDTYI 316 (357) Q Consensus 290 ~lGa~~~~l~~~~~~l~~~~~~l~~~~ 316 (357) .+|+|.||+|.-...++.....+++.+ T Consensus 14 tIGaRLNRvedKvtqmDq~Ln~itdmL 40 (49) T 3bj4_A 14 TIGARLNRVEDKVTQLDQRLALITDML 40 (49) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 398899889999999999999999999 No 10 >>3hfe_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, trimer, alternative splicing, atrial fibrillation, cell membrane; 1.70A {Homo sapiens} PDB: 3hfc_A (A:) Probab=15.74 E-value=52 Score=11.51 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 86689999999999899999 Q gi|254780523|r 290 VLGISEKNINEERVFLQNKN 309 (357) Q Consensus 290 ~lGa~~~~l~~~~~~l~~~~ 309 (357) .+|+|.||+|.--..++... T Consensus 7 tigarlnrvedkvtq~dq~l 26 (31) T 3hfe_A 7 TIGARLNRVEDKVTQLDQRL 26 (31) T ss_dssp SHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHH T ss_conf 08888878999998887766 Done!