HHsearch results for GI: 254780523 and protein with PDBid: 1io1_A

>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=99.96  E-value=6.5e-28  Score=171.39  Aligned_cols=94  Identities=6%  Similarity=0.033  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf             9999999999999999999999999998888999999999999851378889889999999998656777777652-002
Q gi|254780523|r   55 WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDE  133 (357)
Q Consensus        55 l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~  133 (357)
                      ++.++..|+|+.+|..++.++++++|++|+++.++|+|||||++|++|+++++.||.++..|+.+|+++|.++++. +|+
T Consensus         1 ~~~qi~gl~qa~~N~~d~~s~~qtae~al~e~~~iL~r~reLavqaan~t~t~~dr~ai~~E~~~L~~ei~~ia~~T~fn   80 (398)
T 1io1_A            1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN   80 (398)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             94056559999999999999999999999999999999999999861468999999999999999999999999738148


Q ss_pred             CCEEECCCCCCCCCC
Q ss_conf             430410566544321
Q gi|254780523|r  134 GQYLFSGINSSEKPL  148 (357)
Q Consensus       134 g~~~f~G~~~~~~p~  148 (357)
                      |.+||.|......|+
T Consensus        81 g~~Ll~Gs~~~~~~~   95 (398)
T 1io1_A           81 GVKVLAQDNTLTIQV   95 (398)
T ss_dssp             TBCTTTSCEEEEEEC
T ss_pred             CCCCCCCCCCEEEEE
T ss_conf             834325677369983