HHsearch results for GI: 254780523 and protein with PDBid: 1ucu_A
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=100.00 E-value=0 Score=322.59 Aligned_cols=347 Identities=11% Similarity=0.006 Sum_probs=224.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357)
Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357)
+||+|++++...+++|++.+.+|.+.|+||||||||++|+|||+++.++++|+.++..+++|.+|+..+.+||+++|++|
T Consensus 2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L 81 (494)
T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL 81 (494)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 09975199999999999999999999998601586588320589999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88999999999999851378889889999999998656777777652-00243041056654432122333332222222
Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357)
Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357)
.++.++|+|+||++++++|++++++||++++.|+.+++++|.+++|. +++|.|+|+|......|+..............
T Consensus 82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~ 161 (494)
T 1ucu_A 82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ 161 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC
T ss_conf 99999999999999976168876455777788999988777776545421413320114542278752157225640233
Q ss_pred CCHHHCC-------------------C-------CCCCCCC------CCCCCCCC-----C--------------CCCCC
Q ss_conf 1000101-------------------3-------4543222------45665321-----1--------------23332
Q gi|254780523|r 163 DQMLQGF-------------------L-------EENSKSL------LAGQHLEV-----S--------------SMNAQ 191 (357)
Q Consensus 163 ~~~~~~~-------------------~-------~~~~~~~------~~~~~~~~-----~--------------~~~~~ 191 (357)
....... . ....... ........ . .....
T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1ucu_A 162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGK 241 (494)
T ss_dssp CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEEEEEETCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCC
T ss_conf 33222465310134444555420010023310233024421111234323221013320222011100000122013243
Q ss_pred C-C------------CCCCCCCCCCCCC-CCCC-----CCEEECCC------------------CCCCEEECCCCCCEEE
Q ss_conf 2-1------------0012334444456-6543-----20011156------------------6520000025641022
Q gi|254780523|r 192 Q-M------------TDFIKQLEDKFSD-DEYW-----ANNWSNAS------------------DHNIKYRIKDTEGIDV 234 (357)
Q Consensus 192 ~-~------------~~~~~~~~~~~~~-~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~ 234 (357)
. . ............. .... ........ ..........+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (494)
T 1ucu_A 242 DGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDG 321 (494)
T ss_dssp CEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTCCSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEECC
T ss_conf 32212222445553000234433333443220223334310023332223321000243332210001320332101014
Q ss_pred EE------------ECCCC-----------------------------------HHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 32------------03531-----------------------------------01123333321002334455511356
Q gi|254780523|r 235 SA------------NVNMR-----------------------------------GIRDIMFVAVIGTEFLSKNLTDGARN 267 (357)
Q Consensus 235 ~~------------~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (357)
.. ..... ..........................
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 401 (494)
T 1ucu_A 322 GLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAA 401 (494)
T ss_dssp EEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 43223342100012344543123442000222034432100112234320000343111123332011221001213437
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67777789999999999999998668999999999989999999998643332788899999999999999999999999
Q gi|254780523|r 268 VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347 (357)
Q Consensus 268 ~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~ 347 (357)
.....++..||.++++|...|+++|++++|||...+++.+..++++..+|+|+|+||+|++++|+++|+.+||+.+|+++
T Consensus 402 ~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~laq 481 (494)
T 1ucu_A 402 TTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQ 481 (494)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999879999999999999999999999854577140999999999999999999999999
Q ss_pred HHC
Q ss_conf 736
Q gi|254780523|r 348 LQK 350 (357)
Q Consensus 348 i~~ 350 (357)
..+
T Consensus 482 An~ 484 (494)
T 1ucu_A 482 ANQ 484 (494)
T ss_dssp HHH
T ss_pred HCC
T ss_conf 752