HHsearch results for GI: 254780523 and protein with PDBid: 1ucu_A

>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=100.00  E-value=0  Score=322.59  Aligned_cols=347  Identities=11%  Similarity=0.006  Sum_probs=224.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13218999999999999999999999999720220464212899999999999999999999999999999999999988
Q gi|254780523|r    4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL   83 (357)
Q Consensus         4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L   83 (357)
                      +||+|++++...+++|++.+.+|.+.|+||||||||++|+|||+++.++++|+.++..+++|.+|+..+.+||+++|++|
T Consensus         2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L   81 (494)
T 1ucu_A            2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL   81 (494)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             09975199999999999999999999998601586588320589999999999999999999998999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999999999999851378889889999999998656777777652-00243041056654432122333332222222
Q gi|254780523|r   84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF  162 (357)
Q Consensus        84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~  162 (357)
                      .++.++|+|+||++++++|++++++||++++.|+.+++++|.+++|. +++|.|+|+|......|+..............
T Consensus        82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~  161 (494)
T 1ucu_A           82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ  161 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC
T ss_conf             99999999999999976168876455777788999988777776545421413320114542278752157225640233


Q ss_pred             CCHHHCC-------------------C-------CCCCCCC------CCCCCCCC-----C--------------CCCCC
Q ss_conf             1000101-------------------3-------4543222------45665321-----1--------------23332
Q gi|254780523|r  163 DQMLQGF-------------------L-------EENSKSL------LAGQHLEV-----S--------------SMNAQ  191 (357)
Q Consensus       163 ~~~~~~~-------------------~-------~~~~~~~------~~~~~~~~-----~--------------~~~~~  191 (357)
                      .......                   .       .......      ........     .              .....
T Consensus       162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (494)
T 1ucu_A          162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGK  241 (494)
T ss_dssp             CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEEEEEETCSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCC
T ss_conf             33222465310134444555420010023310233024421111234323221013320222011100000122013243


Q ss_pred             C-C------------CCCCCCCCCCCCC-CCCC-----CCEEECCC------------------CCCCEEECCCCCCEEE
Q ss_conf             2-1------------0012334444456-6543-----20011156------------------6520000025641022
Q gi|254780523|r  192 Q-M------------TDFIKQLEDKFSD-DEYW-----ANNWSNAS------------------DHNIKYRIKDTEGIDV  234 (357)
Q Consensus       192 ~-~------------~~~~~~~~~~~~~-~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~  234 (357)
                      . .            ............. ....     ........                  ..........+.....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  321 (494)
T 1ucu_A          242 DGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDG  321 (494)
T ss_dssp             CEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTCCSCEEEEEEEEECTTSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEECC
T ss_conf             32212222445553000234433333443220223334310023332223321000243332210001320332101014


Q ss_pred             EE------------ECCCC-----------------------------------HHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf             32------------03531-----------------------------------01123333321002334455511356
Q gi|254780523|r  235 SA------------NVNMR-----------------------------------GIRDIMFVAVIGTEFLSKNLTDGARN  267 (357)
Q Consensus       235 ~~------------~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (357)
                      ..            .....                                   ..........................
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  401 (494)
T 1ucu_A          322 GLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAA  401 (494)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             43223342100012344543123442000222034432100112234320000343111123332011221001213437


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67777789999999999999998668999999999989999999998643332788899999999999999999999999
Q gi|254780523|r  268 VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK  347 (357)
Q Consensus       268 ~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~  347 (357)
                      .....++..||.++++|...|+++|++++|||...+++.+..++++..+|+|+|+||+|++++|+++|+.+||+.+|+++
T Consensus       402 ~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~laq  481 (494)
T 1ucu_A          402 TTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQ  481 (494)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999999999879999999999999999999999854577140999999999999999999999999


Q ss_pred             HHC
Q ss_conf             736
Q gi|254780523|r  348 LQK  350 (357)
Q Consensus       348 i~~  350 (357)
                      ..+
T Consensus       482 An~  484 (494)
T 1ucu_A          482 ANQ  484 (494)
T ss_dssp             HHH
T ss_pred             HCC
T ss_conf             752