HHsearch results for GI: 254780523 and protein with PDBid: 3k8w_A
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=100.00 E-value=6.4e-43 Score=254.85 Aligned_cols=295 Identities=11% Similarity=0.026 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999997202204642128999999999999999999999999999999999999888899999999999985137
Q gi|254780523|r 23 NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLE 102 (357)
Q Consensus 23 ~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n 102 (357)
|++|.+.|+||||||||.+|+|||++++++++|+.+++.+++|.+|+..+.+||+.+|.+|+++.++|+|+||+++++.|
T Consensus 2 q~~l~~~~~~lstGkri~~~sDdp~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~e~~l~~~~~~l~~~rel~vqa~n 81 (326)
T 3k8w_A 2 QNSLSTSLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASN 81 (326)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67899999986242764781005999999999999999999999989999999999999999999999999999997513
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC---
Q ss_conf 88898899999999986567777776520-02430410566544321223333322222221000101345432224---
Q gi|254780523|r 103 GKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL--- 178 (357)
Q Consensus 103 ~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (357)
++++.+||++|+.|+++++++|.+++|++ ++|.|+|+|......|+..............................
T Consensus 82 ~t~~~~dr~~i~~e~~~l~~ql~~ian~~~~nG~~lf~g~~~~~~~~~g~~~~~ti~v~~~~~~~~~~~g~~~~~~~~~~ 161 (326)
T 3k8w_A 82 GTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTI 161 (326)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTEECSSSCCCEEEEECSSSTTCEEEEECCCCCSTTTTTCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66766769989999999999999999873225722201333211001355543210123323321113453112333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCEEECCCCCCCEEECCCCCCEEEEEECCC
Q ss_conf 56653211233322100123344444566543------------------200111566520000025641022320353
Q gi|254780523|r 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW------------------ANNWSNASDHNIKYRIKDTEGIDVSANVNM 240 (357)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357)
................................ ..............................
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (326)
T 3k8w_A 162 DATDLTKYDTAMAAGDLTINGVDVGKIDAASTAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAAND 241 (326)
T ss_dssp EGGGCTTTTSCBCTTSSEETTEECCCBCCCSSHHHHHHHHHHHHHHTHHHHSEEEEEETTTTEEEEEESSCEEEESSCCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 32110000012234421331233332122000122567778876531022333301024332200001121101245333
Q ss_pred CHHHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 101123333--32100233445551135667777789999999999999998668999999999989999999998643
Q gi|254780523|r 241 RGIRDIMFV--AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317 (357)
Q Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s 317 (357)
......... .......................++..||.++++|...|++||+++||||...+.|.+..++++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~a~~al~~iD~Al~~V~~~Ra~lGA~qNRL~~~i~nL~~~~~N~~aa~~ 320 (326)
T 3k8w_A 242 ATVAGWANNATTGTATTTTGINSLTVSSFTNAQQTITQIDNALKDINTARADLGAVQNRFTSTVANLQSMTENLSSALE 320 (326)
T ss_dssp HHHHSSCCEEEESEEEEEESSTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0122222221123221113444322112777999999999999999999998758999999999999999999999985