Query gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] Match_columns 357 No_of_seqs 142 out of 3151 Neff 10.7 Searched_HMMs 23785 Date Tue May 31 21:44:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780523.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ucu_A Phase 1 flagellin; flag 100.0 0 0 322.6 30.5 347 4-350 2-484 (494) 2 3k8w_A Flagellin homolog; flag 100.0 6.4E-43 0 254.9 23.7 295 23-317 2-320 (326) 3 2d4x_A Flagellar HOOK-associat 100.0 8.6E-37 3.6E-41 220.8 17.3 245 43-327 2-248 (248) 4 1io1_A Phase 1 flagellin; beta 100.0 6.5E-28 2.7E-32 171.4 17.7 94 55-148 1-95 (398) 5 3k1h_A HP1076, putative unchar 98.0 6.2E-07 2.6E-11 54.7 0.0 79 48-142 6-85 (158) 6 1ory_B Flagellin; flagellar ch 97.3 8.5E-05 3.6E-09 42.8 2.4 44 308-351 3-46 (55) 7 3a69_A Flagellar HOOK protein 72.5 2.4 0.0001 18.1 3.1 32 320-351 363-394 (402) 8 2d4y_A HAP1, flagellar HOOK-as 63.7 4.9 0.00021 16.3 21.3 53 281-333 411-463 (463) 9 2xok_G ATP synthase subunit ga 14.3 40 0.0017 11.3 5.5 49 284-332 256-304 (311) 10 3bj4_A Potassium voltage-gated 13.1 43 0.0018 11.1 4.4 26 290-315 14-39 (49) No 1 >1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A Probab=100.00 E-value=0 Score=322.59 Aligned_cols=347 Identities=11% Similarity=0.006 Sum_probs=224.5 Q ss_pred CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13218999999999999999999999999720220464212899999999999999999999999999999999999988 Q gi|254780523|r 4 TGISTSSIFERMNILTKELNKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHL 83 (357) Q Consensus 4 ~~Ist~~~~~~~~~~l~~~~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L 83 (357) +||+|++++...+++|++.+.+|.+.|+||||||||++|+|||+++.++++|+.++..+++|.+|+..+.+||+++|++| T Consensus 2 ~~i~tn~~~~~~~~~l~~~~~~l~~~~~~lssG~ri~~~sDdp~~~~~~~~l~~~~~~~~q~~~n~~~a~s~l~~ae~~L 81 (494) T 1ucu_A 2 QVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGAL 81 (494) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 09975199999999999999999999998601586588320589999999999999999999998999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88999999999999851378889889999999998656777777652-00243041056654432122333332222222 Q gi|254780523|r 84 SSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSF 162 (357) Q Consensus 84 ~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~ 162 (357) .++.++|+|+||++++++|++++++||++++.|+.+++++|.+++|. +++|.|+|+|......|+.............. T Consensus 82 ~~v~~~L~r~relavqaan~~~s~~dr~ai~~ei~~l~~~i~~ia~~t~fnG~~Lf~G~~~~~~~~g~~~~~~~~~~~~~ 161 (494) T 1ucu_A 82 NEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDLKQ 161 (494) T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCTTTSCEEEEEECSSSTTCEEEEEECC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCEEEEECCC T ss_conf 99999999999999976168876455777788999988777776545421413320114542278752157225640233 Q ss_pred CCHHHCC-------------------C-------CCCCCCC------CCCCCCCC-----C--------------CCCCC Q ss_conf 1000101-------------------3-------4543222------45665321-----1--------------23332 Q gi|254780523|r 163 DQMLQGF-------------------L-------EENSKSL------LAGQHLEV-----S--------------SMNAQ 191 (357) Q Consensus 163 ~~~~~~~-------------------~-------~~~~~~~------~~~~~~~~-----~--------------~~~~~ 191 (357) ....... . ....... ........ . ..... T Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494) T 1ucu_A 162 INSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGGTGK 241 (494) T ss_dssp CSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBCTTSTTTCGGGCSSEEEECSSEEEETTTTEEEEEEEEETCSSC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCC T ss_conf 33222465310134444555420010023310233024421111234323221013320222011100000122013243 Q ss_pred C-C------------CCCCCCCCCCCCC-CCCC-----CCEEECCC------------------CCCCEEECCCCCCEEE Q ss_conf 2-1------------0012334444456-6543-----20011156------------------6520000025641022 Q gi|254780523|r 192 Q-M------------TDFIKQLEDKFSD-DEYW-----ANNWSNAS------------------DHNIKYRIKDTEGIDV 234 (357) Q Consensus 192 ~-~------------~~~~~~~~~~~~~-~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~ 234 (357) . . ............. .... ........ ..........+..... T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (494) T 1ucu_A 242 DGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDG 321 (494) T ss_dssp CEEEEEEECTTTCBEEESTTCSSCCTTSSCTTCCEEESEEEEEGGGTHHHHHHHHHTTCCSCEEEEEEEEECTTSCEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCEEECC T ss_conf 32212222445553000234433333443220223334310023332223321000243332210001320332101014 Q ss_pred EE------------ECCCC-----------------------------------HHHHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 32------------03531-----------------------------------01123333321002334455511356 Q gi|254780523|r 235 SA------------NVNMR-----------------------------------GIRDIMFVAVIGTEFLSKNLTDGARN 267 (357) Q Consensus 235 ~~------------~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (357) .. ..... .......................... T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 401 (494) T 1ucu_A 322 GLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAA 401 (494) T ss_dssp EEEEEETTEEEEEEECTTSCEEECBCCEECSSSSEECCBCEEESTTSCEEEEEETTEEEEHHHHTTCBTTTSCCCCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 43223342100012344543123442000222034432100112234320000343111123332011221001213437 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67777789999999999999998668999999999989999999998643332788899999999999999999999999 Q gi|254780523|r 268 VLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTK 347 (357) Q Consensus 268 ~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~ 347 (357) .....++..||.++++|...|+++|++++|||...+++.+..++++..+|+|+|+||+|++++|+++|+.+||+.+|+++ T Consensus 402 ~~a~~al~~ID~Ai~~V~~~ra~lGA~~nrle~~~~nl~~~~~n~~~~~s~i~DaD~a~e~~~l~~~qi~~Qaa~~~laq 481 (494) T 1ucu_A 402 TTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSVRSRIEDSDYATEVSNMSRAQILQQAGTSVLAQ 481 (494) T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999999999999999999879999999999999999999999854577140999999999999999999999999 Q ss_pred HHC Q ss_conf 736 Q gi|254780523|r 348 LQK 350 (357) Q Consensus 348 i~~ 350 (357) ..+ T Consensus 482 An~ 484 (494) T 1ucu_A 482 ANQ 484 (494) T ss_dssp HHH T ss_pred HCC T ss_conf 752 No 2 >3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A Probab=100.00 E-value=6.4e-43 Score=254.85 Aligned_cols=295 Identities=11% Similarity=0.026 Sum_probs=180.7 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999997202204642128999999999999999999999999999999999999888899999999999985137 Q gi|254780523|r 23 NKDSVKLHEEMVTGQSSDYGLQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLE 102 (357) Q Consensus 23 ~~~l~~~~~qlsTGk~i~~~sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n 102 (357) |++|.+.|+||||||||.+|+|||++++++++|+.+++.+++|.+|+..+.+||+.+|.+|+++.++|+|+||+++++.| T Consensus 2 q~~l~~~~~~lstGkri~~~sDdp~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~e~~l~~~~~~l~~~rel~vqa~n 81 (326) T 3k8w_A 2 QNSLSTSLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASN 81 (326) T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 67899999986242764781005999999999999999999999989999999999999999999999999999997513 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC--- Q ss_conf 88898899999999986567777776520-02430410566544321223333322222221000101345432224--- Q gi|254780523|r 103 GKTDNNKFPINAGMLRDSYESFVTFANMT-DEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLL--- 178 (357) Q Consensus 103 ~t~~~~d~~~~a~e~~~~~~~l~~~aN~~-~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 178 (357) ++++.+||++|+.|+++++++|.+++|++ ++|.|+|+|......|+.............................. T Consensus 82 ~t~~~~dr~~i~~e~~~l~~ql~~ian~~~~nG~~lf~g~~~~~~~~~g~~~~~ti~v~~~~~~~~~~~g~~~~~~~~~~ 161 (326) T 3k8w_A 82 GTNTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVSKIMNAQTASLGGSLTRTTSTI 161 (326) T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHCEETTEECSSSCCCEEEEECSSSTTCEEEEECCCCCSTTTTTCEEEEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 66766769989999999999999999873225722201333211001355543210123323321113453112333333 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCEEECCCCCCCEEECCCCCCEEEEEECCC Q ss_conf 56653211233322100123344444566543------------------200111566520000025641022320353 Q gi|254780523|r 179 AGQHLEVSSMNAQQMTDFIKQLEDKFSDDEYW------------------ANNWSNASDHNIKYRIKDTEGIDVSANVNM 240 (357) Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (357) ................................ .............................. T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (326) T 3k8w_A 162 DATDLTKYDTAMAAGDLTINGVDVGKIDAASTAQERAAQLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAAND 241 (326) T ss_dssp EGGGCTTTTSCBCTTSSEETTEECCCBCCCSSHHHHHHHHHHHHHHTHHHHSEEEEEETTTTEEEEEESSCEEEESSCCC T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCC T ss_conf 32110000012234421331233332122000122567778876531022333301024332200001121101245333 Q ss_pred CHHHHHHHH--HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 101123333--32100233445551135667777789999999999999998668999999999989999999998643 Q gi|254780523|r 241 RGIRDIMFV--AVIGTEFLSKNLTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYIS 317 (357) Q Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s 317 (357) ......... .......................++..||.++++|...|++||+++||||...+.|.+..++++..+. T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~a~~al~~iD~Al~~V~~~Ra~lGA~qNRL~~~i~nL~~~~~N~~aa~~ 320 (326) T 3k8w_A 242 ATVAGWANNATTGTATTTTGINSLTVSSFTNAQQTITQIDNALKDINTARADLGAVQNRFTSTVANLQSMTENLSSALE 320 (326) T ss_dssp HHHHSSCCEEEESEEEEEESSTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0122222221123221113444322112777999999999999999999998758999999999999999999999985 No 3 >2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium} Probab=100.00 E-value=8.6e-37 Score=220.78 Aligned_cols=245 Identities=14% Similarity=0.146 Sum_probs=174.3 Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 12899999999999999999999999999999999999988889999999999998513788898899999999986567 Q gi|254780523|r 43 LQLGARVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYE 122 (357) Q Consensus 43 sddp~~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~ 122 (357) ||||++++++++|+.+++++++|++|+..+.+||+++|++|.+|.++|+|+||++++++|+++++++|++++.|++++++ T Consensus 2 SDDP~~~~~~~~l~~~~~~l~q~~~N~~~a~s~l~~~d~aL~~i~~il~r~relavqa~n~t~s~~dr~~~~~e~~~l~~ 81 (248) T 2d4x_A 2 SDDPIAASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRD 81 (248) T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 96889999999999999999999999999999999999999999999999999999851678887789888999999899 Q ss_pred HHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 77777652-00243041056654432122333332222222100010134543222456653211233322100123344 Q gi|254780523|r 123 SFVTFANM-TDEGQYLFSGINSSEKPLNGYFTKDSLAKKSFDQMLQGFLEENSKSLLAGQHLEVSSMNAQQMTDFIKQLE 201 (357) Q Consensus 123 ~l~~~aN~-~~~g~~~f~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (357) ++..++|+ +++|+|+|+|.+..++||................ .............+........... T Consensus 82 ~i~~iaN~t~~~g~~lf~G~~~~t~pf~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (248) T 2d4x_A 82 QLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSVTQ------------QVDSARTMVIGHTGAQIFNSITSNA 149 (248) T ss_dssp HHHHHHTCBCTTSCBTTSTTCTTSCSBCTTTCCBCSCSSCEEE------------ECSSSCEEEESCCHHHHHSCCCTTC T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC------------CCCCCCEEEECCCCHHHHCCCCCCC T ss_conf 9999975102377321367555666310367544453322110------------1366640331233102201333332 Q ss_pred CCCCCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 444566543200111566520000025641022320353101123333-3210023344555113566777778999999 Q gi|254780523|r 202 DKFSDDEYWANNWSNASDHNIKYRIKDTEGIDVSANVNMRGIRDIMFV-AVIGTEFLSKNLTDGARNVLTKKMLSTVQQG 280 (357) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 280 (357) ...... .......+...... ....................+...+..++.+ T Consensus 150 ~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (248) T 2d4x_A 150 VPEPDG----------------------------SDSEKNLFVMLDTAIAALKTPVEGNNVEKEKAAAAIDKTNRGLKNS 201 (248) T ss_dssp CCCTTS----------------------------CCCCCCHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCC----------------------------CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 122455----------------------------4310134566644554101232332013566667788888767789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99999999986689999999999899999999986433327888999 Q gi|254780523|r 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTA 327 (357) Q Consensus 281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~ 327 (357) ++.+...|+++|++++||+...++++....+++..+++++|+|||++ T Consensus 202 ~~~v~~~~~~~G~~~~~le~~~~~~~~~~~~~~~~~s~i~d~D~A~v 248 (248) T 2d4x_A 202 LNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMSNLVDVDWNSV 248 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999998599999999999899999999999877564283349 No 4 >1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1 Probab=99.96 E-value=6.5e-28 Score=171.39 Aligned_cols=94 Identities=6% Similarity=0.033 Sum_probs=86.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HCC Q ss_conf 9999999999999999999999999998888999999999999851378889889999999998656777777652-002 Q gi|254780523|r 55 WEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTFANM-TDE 133 (357) Q Consensus 55 l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~aN~-~~~ 133 (357) ++.++..|+|+.+|..++.++++++|++|+++.++|+|||||++|++|+++++.||.++..|+.+|+++|.++++. +|+ T Consensus 1 ~~~qi~gl~qa~~N~~d~~s~~qtae~al~e~~~iL~r~reLavqaan~t~t~~dr~ai~~E~~~L~~ei~~ia~~T~fn 80 (398) T 1io1_A 1 FTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 80 (398) T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 94056559999999999999999999999999999999999999861468999999999999999999999999738148 Q ss_pred CCEEECCCCCCCCCC Q ss_conf 430410566544321 Q gi|254780523|r 134 GQYLFSGINSSEKPL 148 (357) Q Consensus 134 g~~~f~G~~~~~~p~ 148 (357) |.+||.|......|+ T Consensus 81 g~~Ll~Gs~~~~~~~ 95 (398) T 1io1_A 81 GVKVLAQDNTLTIQV 95 (398) T ss_dssp TBCTTTSCEEEEEEC T ss_pred CCCCCCCCCCEEEEE T ss_conf 834325677369983 No 5 >3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori} Probab=98.01 E-value=6.2e-07 Score=54.71 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999998888999999999999851378889889999999998656777777 Q gi|254780523|r 48 RVTSILEWEQEKNHIAERLHSNSLVTKRLSTSQAHLSSMQKIVQDMVGPLVILLEGKTDNNKFPINAGMLRDSYESFVTF 127 (357) Q Consensus 48 ~~~~~~~l~~~~~~l~~~~~n~~~a~~~l~~~e~~L~~i~~~l~~~~~~~v~a~n~t~~~~d~~~~a~e~~~~~~~l~~~ 127 (357) -...+.++..++.++++..+|..++.+.++++|++|.+|.++++|+||+. ..++. ++..++.++ T Consensus 6 ~m~~as~mt~qi~~~~~~irnand~is~~Qtae~al~ei~~~lqrm~El~---------~~e~~-------~L~~ei~~i 69 (158) T 3k1h_A 6 HMTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLFNKSMGLEDKD---------ALQAS-------IIKQELREI 69 (158) T ss_dssp --------------CEEECCSHHHHHHHHHHHHHHHHHHHHHTTTGGGSC---------HHHHH-------HHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-------HHHHHHHHH T ss_conf 77777899999986889988278588899999999999999999998725---------99999-------999999999 Q ss_pred H-HHHCCCCEEECCCC Q ss_conf 6-52002430410566 Q gi|254780523|r 128 A-NMTDEGQYLFSGIN 142 (357) Q Consensus 128 a-N~~~~g~~~f~G~~ 142 (357) + |++|.|..+|.|.. T Consensus 70 ~~nt~FnG~~Lfd~~~ 85 (158) T 3k1h_A 70 VENCQFLASPLFDTQL 85 (158) T ss_dssp HHTCEETTEECTTCEE T ss_pred HHHCCCCCEECCCCCE T ss_conf 9957897700027610 No 6 >1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} Probab=97.30 E-value=8.5e-05 Score=42.84 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999986433327888999999999999999999999997368 Q gi|254780523|r 308 KNNIIDTYISKSIGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357) Q Consensus 308 ~~~~l~~~~s~l~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357) ..++++...|.|+|+|+++++++|.+.|+..|++.++.++..+. T Consensus 3 a~eN~~~A~SrI~DaD~A~E~~~lak~qIL~qa~~amLaQAN~~ 46 (55) T 1ory_B 3 AKDNTDNAESIIRNVDFAKEMTEFTKYQIRMQSGVAMLAQANAL 46 (55) T ss_dssp -------------CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 58789999857541559999999999999999999999998426 No 7 >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Probab=72.52 E-value=2.4 Score=18.07 Aligned_cols=32 Identities=3% Similarity=0.011 Sum_probs=27.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 27888999999999999999999999997368 Q gi|254780523|r 320 IGVEQHTAHAQLSTLINKIEMSYMITTKLQKL 351 (357) Q Consensus 320 ~daD~ae~~t~l~~~q~~~qas~~~~a~i~~~ 351 (357) -.+|+.|+.++|-+.|-+|||+-++..-+-+| T Consensus 363 S~V~ldeEmtnli~~Q~aY~A~akvitt~dem 394 (402) T 3a69_A 363 SNVDLSKELVNMIVAQRNYQSNAQTIKTQDQI 394 (402) T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 14799999999999999999975266499999 No 8 >2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} Probab=63.72 E-value=4.9 Score=16.34 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999986689999999999899999999986433327888999999999 Q gi|254780523|r 281 LSGIIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLST 333 (357) Q Consensus 281 ~~~i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~~ 333 (357) .+......+.+|...+..+...+..+.....++..+..+.+|++-|+.++|-+ T Consensus 411 ~~~y~~~v~~ig~~~~~a~~~~~~~~~~~~~l~~~r~svSGVslDEE~~nLik 463 (463) T 2d4y_A 411 NDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQR 463 (463) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC T ss_conf 99999999999999999999999999999999999984406169999997549 No 9 >2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Probab=14.27 E-value=40 Score=11.28 Aligned_cols=49 Identities=4% Similarity=-0.049 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 9999998668999999999989999999998643332788899999999 Q gi|254780523|r 284 IIEQRAVLGISEKNINEERVFLQNKNNIIDTYISKSIGVEQHTAHAQLS 332 (357) Q Consensus 284 i~~~~a~lGa~~~~l~~~~~~l~~~~~~l~~~~s~l~daD~ae~~t~l~ 332 (357) +....++.++|+.-++.+.++.++....|+-...+..=+-+.++++|+- T Consensus 256 les~aSE~aaRm~AM~~At~Na~eli~~L~l~yNk~RQa~IT~El~EIV 304 (311) T 2xok_G 256 AQGYAAEISARRNAMDNASKNAGDMINRYSILYNRTRQAVITNELVDII 304 (311) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999959999999999999999998899999999 No 10 >3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens} Probab=13.13 E-value=43 Score=11.09 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 86689999999999899999999986 Q gi|254780523|r 290 VLGISEKNINEERVFLQNKNNIIDTY 315 (357) Q Consensus 290 ~lGa~~~~l~~~~~~l~~~~~~l~~~ 315 (357) .+|+|.||+|.-...++.....++.- T Consensus 14 tigarlnrvedk~t~mDq~Ln~itdm 39 (49) T 3bj4_A 14 TIGARLNRVEDKVTQLDQRLALITDM 39 (49) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 29899988999999999999999999 Done!